Query 003531
Match_columns 812
No_of_seqs 913 out of 5300
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-148 4E-153 1318.0 88.0 769 38-810 84-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-125 5E-130 1094.0 68.1 612 201-812 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-85 5.7E-90 778.1 66.7 688 100-808 48-747 (857)
4 PLN03081 pentatricopeptide (PP 100.0 9.4E-71 2E-75 638.1 55.7 474 100-576 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 8.6E-70 1.9E-74 630.6 54.4 521 72-611 369-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 2.9E-65 6.3E-70 592.9 64.5 502 170-679 367-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-34 7.9E-39 348.2 68.2 611 49-673 239-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-33 1E-37 338.5 69.2 610 48-673 204-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3.3E-34 7.2E-39 243.8 7.3 105 680-802 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 2.9E-24 6.2E-29 261.9 65.0 602 51-672 42-739 (1157)
11 PRK11447 cellulose synthase su 100.0 8.8E-24 1.9E-28 257.6 59.7 585 77-674 33-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 4.8E-21 1E-25 222.7 59.0 561 83-673 55-740 (987)
13 PRK09782 bacteriophage N4 rece 99.9 3E-20 6.6E-25 216.1 59.9 548 105-673 44-706 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.2E-20 4.7E-25 191.8 37.2 448 207-667 51-513 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 7.5E-20 1.6E-24 187.9 29.8 418 245-675 54-487 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-17 5.2E-22 189.1 42.9 249 419-673 307-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 2.3E-18 5E-23 187.5 29.1 291 384-680 44-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 8.4E-18 1.8E-22 183.1 32.2 287 314-638 44-346 (389)
19 KOG2002 TPR-containing nuclear 99.8 2.1E-15 4.6E-20 164.0 46.4 572 88-675 146-800 (1018)
20 PRK15174 Vi polysaccharide exp 99.8 2.8E-16 6E-21 179.6 39.6 367 286-673 17-403 (656)
21 KOG2002 TPR-containing nuclear 99.8 9.8E-15 2.1E-19 159.0 48.5 541 119-673 146-745 (1018)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.7E-20 178.1 42.0 360 277-673 52-456 (765)
23 TIGR00990 3a0801s09 mitochondr 99.8 3.3E-15 7.2E-20 171.5 44.7 250 408-673 333-597 (615)
24 PRK10049 pgaA outer membrane p 99.8 1.1E-15 2.3E-20 178.7 41.1 367 276-674 17-423 (765)
25 PRK15174 Vi polysaccharide exp 99.8 7.2E-16 1.6E-20 176.2 35.8 327 340-676 42-384 (656)
26 PRK14574 hmsH outer membrane p 99.7 6.7E-14 1.4E-18 160.2 44.7 436 213-673 43-513 (822)
27 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.3E-18 158.6 46.2 439 180-646 41-520 (822)
28 KOG4422 Uncharacterized conser 99.7 3.9E-13 8.4E-18 133.4 40.8 330 103-473 116-465 (625)
29 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.4E-16 134.8 52.4 612 49-669 151-891 (895)
30 KOG0495 HAT repeat protein [RN 99.7 7.5E-11 1.6E-15 123.4 53.3 483 151-684 389-889 (913)
31 KOG4422 Uncharacterized conser 99.7 1.4E-13 3E-18 136.5 31.6 251 101-383 205-476 (625)
32 KOG2076 RNA polymerase III tra 99.7 1.9E-11 4.2E-16 132.9 48.4 518 151-672 152-768 (895)
33 KOG2003 TPR repeat-containing 99.6 8.2E-13 1.8E-17 131.7 30.2 271 384-661 428-711 (840)
34 KOG4318 Bicoid mRNA stability 99.6 4.6E-12 9.9E-17 136.7 34.8 524 124-677 11-598 (1088)
35 KOG0495 HAT repeat protein [RN 99.6 8E-10 1.7E-14 115.9 48.3 418 246-675 383-848 (913)
36 PF13429 TPR_15: Tetratricopep 99.6 6.2E-15 1.3E-19 151.9 10.9 253 415-672 17-276 (280)
37 KOG4318 Bicoid mRNA stability 99.6 4.6E-11 1E-15 129.2 39.1 590 59-674 12-809 (1088)
38 KOG1126 DNA-binding cell divis 99.5 7.3E-13 1.6E-17 139.6 20.7 275 390-674 334-621 (638)
39 KOG1155 Anaphase-promoting com 99.5 5.4E-11 1.2E-15 119.9 31.0 358 271-671 161-534 (559)
40 KOG1155 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 116.7 33.4 278 415-719 236-522 (559)
41 KOG1126 DNA-binding cell divis 99.5 3.5E-12 7.6E-17 134.5 22.4 265 420-719 333-606 (638)
42 KOG1915 Cell cycle control pro 99.5 2.3E-09 4.9E-14 108.4 39.5 477 152-672 87-624 (677)
43 KOG1173 Anaphase-promoting com 99.4 3E-10 6.4E-15 117.6 32.2 255 413-673 251-518 (611)
44 KOG2003 TPR repeat-containing 99.4 1.5E-10 3.2E-15 115.9 28.7 289 414-714 427-723 (840)
45 KOG0547 Translocase of outer m 99.4 1.6E-10 3.4E-15 117.3 29.1 213 454-672 339-565 (606)
46 PRK10747 putative protoheme IX 99.4 1.2E-10 2.6E-15 125.6 28.9 255 351-640 129-391 (398)
47 PRK10747 putative protoheme IX 99.4 1.1E-10 2.3E-15 126.1 27.7 275 388-672 97-389 (398)
48 TIGR00540 hemY_coli hemY prote 99.4 4E-10 8.6E-15 122.4 31.8 289 317-670 96-396 (409)
49 TIGR00540 hemY_coli hemY prote 99.4 2.5E-10 5.3E-15 124.0 28.6 250 418-669 96-360 (409)
50 PF13429 TPR_15: Tetratricopep 99.4 1.7E-12 3.6E-17 133.8 10.6 251 380-638 13-276 (280)
51 KOG1915 Cell cycle control pro 99.4 5.4E-09 1.2E-13 105.7 34.1 414 286-712 85-535 (677)
52 KOG2047 mRNA splicing factor [ 99.3 1.8E-07 4E-12 98.5 42.8 525 77-672 107-686 (835)
53 TIGR02521 type_IV_pilW type IV 99.3 3.9E-10 8.4E-15 112.9 22.6 198 475-673 30-232 (234)
54 KOG4162 Predicted calmodulin-b 99.3 7.4E-08 1.6E-12 103.8 39.9 459 216-683 239-792 (799)
55 KOG0547 Translocase of outer m 99.3 1.2E-08 2.5E-13 104.0 30.5 405 209-641 120-568 (606)
56 KOG0985 Vesicle coat protein c 99.3 4.6E-07 1E-11 99.7 43.5 457 176-669 609-1245(1666)
57 KOG1173 Anaphase-promoting com 99.3 2.8E-08 6.1E-13 103.3 32.8 270 307-618 246-530 (611)
58 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.7E-13 101.8 29.1 286 318-638 97-389 (400)
59 COG2956 Predicted N-acetylgluc 99.2 9.8E-09 2.1E-13 99.3 26.9 285 317-637 47-345 (389)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.7E-11 5.8E-16 87.3 5.7 50 202-251 1-50 (50)
61 KOG4162 Predicted calmodulin-b 99.2 2E-07 4.4E-12 100.5 36.9 440 168-645 318-789 (799)
62 PF13041 PPR_2: PPR repeat fam 99.2 4.4E-11 9.5E-16 86.2 6.5 50 505-554 1-50 (50)
63 KOG2376 Signal recognition par 99.2 1.8E-07 3.9E-12 97.9 35.3 430 212-666 20-513 (652)
64 PRK12370 invasion protein regu 99.2 3.5E-09 7.5E-14 119.6 25.0 242 422-673 277-535 (553)
65 KOG3785 Uncharacterized conser 99.2 5.7E-08 1.2E-12 94.9 29.1 317 287-647 164-497 (557)
66 KOG1174 Anaphase-promoting com 99.2 1.7E-07 3.8E-12 93.6 32.8 365 274-644 97-505 (564)
67 KOG2047 mRNA splicing factor [ 99.2 2.8E-06 6E-11 89.9 42.8 446 173-671 102-613 (835)
68 COG3071 HemY Uncharacterized e 99.2 5.9E-08 1.3E-12 97.1 28.2 289 217-540 97-394 (400)
69 KOG1840 Kinesin light chain [C 99.1 9.3E-09 2E-13 110.4 24.2 230 442-671 200-477 (508)
70 COG3063 PilF Tfp pilus assembl 99.1 5.2E-09 1.1E-13 96.8 16.9 162 509-675 37-204 (250)
71 KOG3616 Selective LIM binding 99.1 5.5E-06 1.2E-10 88.5 41.0 505 84-673 456-1024(1636)
72 PRK12370 invasion protein regu 99.1 1E-08 2.2E-13 115.7 23.0 211 455-673 275-502 (553)
73 KOG0985 Vesicle coat protein c 99.1 5.5E-05 1.2E-09 84.0 49.2 572 77-673 365-1162(1666)
74 COG2956 Predicted N-acetylgluc 99.1 5.8E-08 1.2E-12 94.1 23.9 287 389-682 49-356 (389)
75 PRK11189 lipoprotein NlpI; Pro 99.1 9.4E-09 2E-13 106.1 20.1 189 477-674 65-266 (296)
76 TIGR02521 type_IV_pilW type IV 99.0 4.9E-08 1.1E-12 97.6 23.6 196 407-641 32-234 (234)
77 KOG3616 Selective LIM binding 99.0 1E-05 2.2E-10 86.4 39.9 100 548-648 1245-1364(1636)
78 KOG1840 Kinesin light chain [C 99.0 5.8E-08 1.2E-12 104.4 23.9 231 377-638 201-478 (508)
79 KOG1174 Anaphase-promoting com 99.0 1.7E-06 3.8E-11 86.6 31.9 277 405-718 231-519 (564)
80 KOG1127 TPR repeat-containing 99.0 3.8E-06 8.2E-11 93.2 34.3 276 392-671 800-1102(1238)
81 PRK11189 lipoprotein NlpI; Pro 98.9 2.3E-07 5E-12 95.8 24.3 198 448-653 71-280 (296)
82 KOG3785 Uncharacterized conser 98.9 7.6E-06 1.7E-10 80.4 32.3 215 356-581 270-497 (557)
83 KOG1129 TPR repeat-containing 98.9 3.7E-08 8E-13 95.3 15.9 227 410-674 227-459 (478)
84 KOG2376 Signal recognition par 98.9 6.8E-05 1.5E-09 79.1 40.3 116 111-233 20-139 (652)
85 KOG1156 N-terminal acetyltrans 98.9 2.1E-05 4.6E-10 83.8 36.8 442 150-637 19-509 (700)
86 KOG1129 TPR repeat-containing 98.9 9.8E-08 2.1E-12 92.4 16.9 240 378-653 226-472 (478)
87 KOG3617 WD40 and TPR repeat-co 98.8 0.00014 3.1E-09 79.2 39.2 328 67-433 720-1107(1416)
88 PF04733 Coatomer_E: Coatomer 98.8 6.4E-07 1.4E-11 91.1 19.8 81 593-673 182-265 (290)
89 KOG1125 TPR repeat-containing 98.8 2.6E-07 5.7E-12 96.8 16.6 196 475-673 318-527 (579)
90 KOG1156 N-terminal acetyltrans 98.7 0.00015 3.2E-09 77.6 36.4 441 217-671 20-509 (700)
91 KOG0624 dsRNA-activated protei 98.7 2.7E-05 5.9E-10 76.4 28.0 306 282-646 46-377 (504)
92 PRK15359 type III secretion sy 98.7 1.4E-07 3.1E-12 85.6 11.8 121 528-655 14-137 (144)
93 KOG0548 Molecular co-chaperone 98.7 7.4E-06 1.6E-10 85.5 25.4 213 447-673 230-455 (539)
94 PF12569 NARP1: NMDA receptor- 98.7 9.7E-06 2.1E-10 88.6 26.8 244 350-604 14-288 (517)
95 KOG3617 WD40 and TPR repeat-co 98.7 8.9E-05 1.9E-09 80.7 32.8 113 483-605 1042-1172(1416)
96 COG3063 PilF Tfp pilus assembl 98.7 6.8E-06 1.5E-10 76.6 21.0 165 477-644 70-241 (250)
97 PF12569 NARP1: NMDA receptor- 98.7 2E-05 4.2E-10 86.3 28.3 283 312-603 11-330 (517)
98 PRK04841 transcriptional regul 98.7 0.00076 1.7E-08 82.3 45.6 362 281-673 348-760 (903)
99 cd05804 StaR_like StaR_like; a 98.6 2.9E-05 6.2E-10 83.3 29.1 293 378-673 9-336 (355)
100 TIGR03302 OM_YfiO outer membra 98.6 1.8E-06 4E-11 86.4 18.3 179 475-673 32-232 (235)
101 KOG0548 Molecular co-chaperone 98.6 5.4E-05 1.2E-09 79.2 28.9 164 482-657 304-473 (539)
102 KOG1127 TPR repeat-containing 98.6 4.6E-05 1E-09 84.9 29.8 450 173-670 492-993 (1238)
103 PRK15363 pathogenicity island 98.6 5.1E-07 1.1E-11 80.2 12.0 123 573-718 28-154 (157)
104 PRK10370 formate-dependent nit 98.6 1.7E-06 3.7E-11 83.1 16.6 145 514-673 23-173 (198)
105 PLN02789 farnesyltranstransfer 98.6 8.1E-06 1.8E-10 84.2 22.0 189 478-671 73-300 (320)
106 PRK15359 type III secretion sy 98.6 1.3E-06 2.8E-11 79.3 13.3 98 574-673 22-121 (144)
107 KOG4340 Uncharacterized conser 98.5 5.1E-05 1.1E-09 73.1 23.9 370 277-672 47-442 (459)
108 KOG1070 rRNA processing protei 98.5 1.1E-05 2.5E-10 92.5 22.0 200 473-676 1455-1666(1710)
109 PRK10370 formate-dependent nit 98.5 8.8E-06 1.9E-10 78.1 17.7 154 483-648 23-182 (198)
110 cd05804 StaR_like StaR_like; a 98.5 0.00041 8.9E-09 74.4 32.5 193 412-640 120-337 (355)
111 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 60.2 3.8 33 168-200 2-34 (34)
112 TIGR02552 LcrH_SycD type III s 98.4 3.1E-06 6.7E-11 76.4 12.6 100 574-673 12-114 (135)
113 KOG1914 mRNA cleavage and poly 98.4 0.0041 8.8E-08 65.5 37.0 171 423-594 348-526 (656)
114 PRK15179 Vi polysaccharide bio 98.4 1.6E-05 3.5E-10 90.4 20.2 137 505-646 84-224 (694)
115 PF12854 PPR_1: PPR repeat 98.4 3.7E-07 8E-12 58.9 4.0 33 269-301 2-34 (34)
116 PF04733 Coatomer_E: Coatomer 98.4 1.6E-05 3.4E-10 81.0 18.0 157 377-571 104-265 (290)
117 PLN02789 farnesyltranstransfer 98.4 4.2E-05 9.1E-10 78.9 21.3 185 483-672 44-249 (320)
118 TIGR03302 OM_YfiO outer membra 98.4 2.2E-05 4.7E-10 78.6 18.7 180 441-641 33-234 (235)
119 COG5010 TadD Flp pilus assembl 98.4 2.3E-05 4.9E-10 74.9 17.2 153 511-667 70-225 (257)
120 KOG1128 Uncharacterized conser 98.4 9.9E-06 2.1E-10 87.4 15.7 193 473-672 395-615 (777)
121 KOG1128 Uncharacterized conser 98.4 1.5E-05 3.3E-10 86.0 16.9 213 410-641 402-618 (777)
122 COG5010 TadD Flp pilus assembl 98.3 2.2E-05 4.9E-10 74.9 15.7 134 538-673 62-197 (257)
123 KOG1125 TPR repeat-containing 98.3 1.6E-05 3.4E-10 83.8 15.9 219 385-642 295-530 (579)
124 KOG4340 Uncharacterized conser 98.3 0.00048 1E-08 66.5 24.2 237 286-533 124-372 (459)
125 PRK04841 transcriptional regul 98.3 0.0013 2.8E-08 80.3 35.1 257 314-570 461-759 (903)
126 COG4783 Putative Zn-dependent 98.3 0.00011 2.5E-09 76.2 20.8 136 516-673 315-454 (484)
127 PRK15179 Vi polysaccharide bio 98.2 9.2E-05 2E-09 84.3 20.6 142 471-617 81-229 (694)
128 KOG1070 rRNA processing protei 98.2 0.00036 7.8E-09 80.7 23.3 224 407-637 1459-1698(1710)
129 KOG0624 dsRNA-activated protei 98.2 0.00072 1.6E-08 66.7 22.0 248 482-772 44-314 (504)
130 KOG2053 Mitochondrial inherita 98.1 0.033 7.2E-07 62.5 40.3 213 52-270 24-257 (932)
131 COG4783 Putative Zn-dependent 98.1 0.0005 1.1E-08 71.6 20.4 119 551-672 315-436 (484)
132 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 53.7 4.7 35 205-239 1-35 (35)
133 TIGR02552 LcrH_SycD type III s 98.0 7.4E-05 1.6E-09 67.3 12.4 113 529-646 5-121 (135)
134 KOG3060 Uncharacterized conser 98.0 0.0011 2.3E-08 63.0 19.9 162 480-646 56-227 (289)
135 TIGR00756 PPR pentatricopeptid 98.0 8.7E-06 1.9E-10 53.4 4.6 35 407-441 1-35 (35)
136 PRK14720 transcript cleavage f 98.0 0.00047 1E-08 79.3 20.9 232 374-655 30-268 (906)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 9.6E-05 2.1E-09 77.8 14.3 122 545-671 172-295 (395)
138 PRK15331 chaperone protein Sic 98.0 0.00014 3.1E-09 65.1 12.3 100 573-672 31-133 (165)
139 PLN03088 SGT1, suppressor of 98.0 5.5E-05 1.2E-09 80.1 11.6 97 550-649 10-109 (356)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00025 5.4E-09 74.7 15.8 126 478-608 171-298 (395)
141 PRK14720 transcript cleavage f 97.9 0.0021 4.5E-08 74.2 23.6 261 335-646 25-313 (906)
142 KOG0553 TPR repeat-containing 97.9 7.1E-05 1.5E-09 72.9 9.9 94 554-650 93-189 (304)
143 KOG0553 TPR repeat-containing 97.9 7E-05 1.5E-09 73.0 9.7 89 585-673 88-178 (304)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00027 5.8E-09 64.4 13.3 51 617-668 92-142 (145)
145 KOG3081 Vesicle coat complex C 97.9 0.008 1.7E-07 57.8 22.9 141 515-665 116-262 (299)
146 PF13812 PPR_3: Pentatricopept 97.9 2.6E-05 5.5E-10 50.7 4.5 34 204-237 1-34 (34)
147 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00023 4.9E-09 62.3 11.7 101 545-645 5-111 (119)
148 PF13812 PPR_3: Pentatricopept 97.8 2.8E-05 6.2E-10 50.5 4.3 33 508-540 2-34 (34)
149 PRK10153 DNA-binding transcrip 97.8 0.00065 1.4E-08 75.1 17.3 140 504-645 334-488 (517)
150 PF13414 TPR_11: TPR repeat; P 97.8 2.8E-05 6E-10 60.5 4.8 65 609-673 2-67 (69)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00017 3.7E-09 63.2 10.2 96 579-674 3-106 (119)
152 cd00189 TPR Tetratricopeptide 97.8 0.00012 2.6E-09 60.7 8.8 92 581-672 3-96 (100)
153 PF09976 TPR_21: Tetratricopep 97.8 0.001 2.3E-08 60.5 15.4 123 511-637 16-145 (145)
154 KOG3060 Uncharacterized conser 97.8 0.0021 4.6E-08 61.1 17.0 160 509-673 54-220 (289)
155 PF12895 Apc3: Anaphase-promot 97.8 2.1E-05 4.6E-10 63.9 3.3 77 592-669 3-83 (84)
156 COG4235 Cytochrome c biogenesi 97.7 0.00016 3.4E-09 71.2 9.3 105 575-679 152-262 (287)
157 PLN03088 SGT1, suppressor of 97.7 0.00031 6.8E-09 74.4 11.6 103 513-620 8-113 (356)
158 KOG3081 Vesicle coat complex C 97.6 0.01 2.2E-07 57.1 19.7 154 484-644 116-276 (299)
159 PF13432 TPR_16: Tetratricopep 97.6 8.8E-05 1.9E-09 56.8 5.2 58 616-673 3-60 (65)
160 PF01535 PPR: PPR repeat; Int 97.6 7E-05 1.5E-09 47.3 3.7 31 205-235 1-31 (31)
161 PRK02603 photosystem I assembl 97.6 0.0011 2.4E-08 62.4 13.4 130 506-659 34-166 (172)
162 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 47.3 3.5 31 306-336 1-31 (31)
163 CHL00033 ycf3 photosystem I as 97.6 0.00036 7.8E-09 65.5 9.3 94 577-670 34-139 (168)
164 KOG0550 Molecular chaperone (D 97.6 0.0034 7.3E-08 63.9 16.0 89 585-673 256-350 (486)
165 PRK02603 photosystem I assembl 97.5 0.0005 1.1E-08 64.8 9.8 82 578-659 35-121 (172)
166 PF13432 TPR_16: Tetratricopep 97.5 0.00026 5.5E-09 54.2 6.3 61 584-644 3-65 (65)
167 PF14559 TPR_19: Tetratricopep 97.5 0.00014 3E-09 56.3 4.4 53 621-673 2-54 (68)
168 COG3898 Uncharacterized membra 97.4 0.14 3E-06 52.2 25.1 241 418-672 132-391 (531)
169 cd00189 TPR Tetratricopeptide 97.4 0.0018 3.9E-08 53.4 10.8 88 551-641 9-99 (100)
170 CHL00033 ycf3 photosystem I as 97.4 0.0048 1E-07 57.8 14.6 109 507-643 35-153 (168)
171 PF05843 Suf: Suppressor of fo 97.4 0.0044 9.6E-08 63.3 15.2 135 508-645 2-142 (280)
172 PF13414 TPR_11: TPR repeat; P 97.4 0.0003 6.5E-09 54.6 4.8 65 577-641 2-69 (69)
173 PF04840 Vps16_C: Vps16, C-ter 97.3 0.28 6.1E-06 50.7 30.5 121 480-620 181-301 (319)
174 PF12895 Apc3: Anaphase-promot 97.3 0.00073 1.6E-08 54.8 6.5 80 520-603 2-83 (84)
175 KOG1914 mRNA cleavage and poly 97.3 0.37 8E-06 51.4 38.1 210 458-670 310-536 (656)
176 KOG2053 Mitochondrial inherita 97.3 0.55 1.2E-05 53.2 44.2 123 84-210 21-151 (932)
177 PF13371 TPR_9: Tetratricopept 97.2 0.00063 1.4E-08 53.4 5.3 56 618-673 3-58 (73)
178 PF14559 TPR_19: Tetratricopep 97.2 0.00025 5.4E-09 54.8 2.8 55 554-611 3-59 (68)
179 PF13431 TPR_17: Tetratricopep 97.2 0.00011 2.4E-09 47.3 0.6 33 632-664 1-33 (34)
180 COG4700 Uncharacterized protei 97.2 0.027 5.9E-07 51.1 15.6 130 538-672 85-221 (251)
181 PRK10153 DNA-binding transcrip 97.2 0.0076 1.6E-07 66.8 14.8 134 538-675 333-484 (517)
182 PF14938 SNAP: Soluble NSF att 97.1 0.06 1.3E-06 55.2 20.3 89 556-644 129-230 (282)
183 KOG2041 WD40 repeat protein [G 97.1 0.69 1.5E-05 50.7 27.7 201 135-364 689-902 (1189)
184 PRK10803 tol-pal system protei 97.1 0.0038 8.1E-08 62.6 10.2 93 581-673 146-246 (263)
185 KOG1130 Predicted G-alpha GTPa 97.1 0.0018 3.9E-08 65.5 7.8 129 544-672 197-343 (639)
186 PRK15363 pathogenicity island 97.0 0.012 2.7E-07 52.6 12.2 87 512-603 40-128 (157)
187 COG4700 Uncharacterized protei 97.0 0.02 4.4E-07 51.9 13.2 107 567-673 78-189 (251)
188 PF12688 TPR_5: Tetratrico pep 97.0 0.014 3E-07 50.4 11.9 91 513-603 7-100 (120)
189 KOG2041 WD40 repeat protein [G 96.9 0.89 1.9E-05 49.9 27.9 269 281-604 767-1047(1189)
190 PF04840 Vps16_C: Vps16, C-ter 96.9 0.66 1.4E-05 48.0 28.2 108 378-501 180-287 (319)
191 PF14938 SNAP: Soluble NSF att 96.9 0.66 1.4E-05 47.6 28.3 94 511-604 159-263 (282)
192 PF13371 TPR_9: Tetratricopept 96.9 0.0022 4.9E-08 50.2 5.5 63 586-648 3-67 (73)
193 KOG0543 FKBP-type peptidyl-pro 96.8 0.009 1.9E-07 61.3 10.7 83 611-719 258-340 (397)
194 PF10037 MRP-S27: Mitochondria 96.8 0.013 2.8E-07 62.3 12.1 80 208-287 107-186 (429)
195 KOG1538 Uncharacterized conser 96.8 0.29 6.2E-06 53.1 21.7 178 263-504 624-801 (1081)
196 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0031 6.6E-08 66.2 7.3 63 577-639 74-141 (453)
197 PF13428 TPR_14: Tetratricopep 96.7 0.0019 4E-08 44.7 3.6 42 611-652 2-43 (44)
198 PRK10866 outer membrane biogen 96.7 0.1 2.2E-06 52.0 17.3 56 381-436 38-99 (243)
199 PRK10803 tol-pal system protei 96.7 0.019 4.1E-07 57.6 12.2 92 553-644 154-251 (263)
200 COG0457 NrfG FOG: TPR repeat [ 96.7 0.69 1.5E-05 45.3 25.6 194 476-673 59-265 (291)
201 PF07079 DUF1347: Protein of u 96.7 1 2.2E-05 47.2 39.1 353 243-615 132-530 (549)
202 PF10037 MRP-S27: Mitochondria 96.7 0.026 5.6E-07 60.1 13.1 118 438-555 63-186 (429)
203 KOG2796 Uncharacterized conser 96.6 0.21 4.5E-06 48.1 17.4 136 409-546 180-323 (366)
204 PF12688 TPR_5: Tetratrico pep 96.6 0.015 3.3E-07 50.2 9.1 84 586-669 9-100 (120)
205 PF08579 RPM2: Mitochondrial r 96.6 0.02 4.3E-07 47.6 9.0 80 106-185 28-116 (120)
206 KOG1538 Uncharacterized conser 96.6 0.48 1E-05 51.4 21.3 10 203-212 498-507 (1081)
207 PRK10866 outer membrane biogen 96.5 0.18 3.8E-06 50.2 17.5 170 481-671 37-239 (243)
208 KOG2280 Vacuolar assembly/sort 96.5 1.9 4.1E-05 48.1 29.2 134 233-367 426-573 (829)
209 PF13281 DUF4071: Domain of un 96.5 0.3 6.5E-06 51.0 19.4 159 482-643 147-338 (374)
210 KOG4555 TPR repeat-containing 96.5 0.012 2.5E-07 49.9 7.3 90 586-675 51-146 (175)
211 KOG2796 Uncharacterized conser 96.5 0.35 7.5E-06 46.7 17.7 233 408-647 71-323 (366)
212 PF08579 RPM2: Mitochondrial r 96.5 0.038 8.3E-07 45.9 10.0 79 208-286 29-116 (120)
213 PF05843 Suf: Suppressor of fo 96.5 0.081 1.8E-06 54.1 15.0 125 444-570 4-135 (280)
214 PRK11906 transcriptional regul 96.4 0.1 2.2E-06 55.2 15.2 142 522-667 273-430 (458)
215 PF07079 DUF1347: Protein of u 96.4 1.7 3.6E-05 45.7 33.6 73 597-670 443-521 (549)
216 PF13525 YfiO: Outer membrane 96.4 0.18 3.8E-06 48.8 15.9 142 511-673 9-170 (203)
217 KOG2280 Vacuolar assembly/sort 96.3 2.4 5.3E-05 47.3 26.4 135 131-266 425-573 (829)
218 PF13424 TPR_12: Tetratricopep 96.3 0.006 1.3E-07 48.5 4.3 59 580-638 7-74 (78)
219 PF06239 ECSIT: Evolutionarily 96.3 0.032 6.8E-07 52.5 9.4 88 101-188 45-153 (228)
220 COG3898 Uncharacterized membra 96.2 1.8 4E-05 44.4 26.9 114 484-604 271-389 (531)
221 PRK11906 transcriptional regul 96.2 0.046 9.9E-07 57.8 11.2 117 557-673 273-401 (458)
222 KOG0550 Molecular chaperone (D 96.2 0.79 1.7E-05 47.4 19.3 48 518-567 260-312 (486)
223 PF06239 ECSIT: Evolutionarily 96.0 0.063 1.4E-06 50.6 10.3 96 497-593 35-153 (228)
224 COG4105 ComL DNA uptake lipopr 96.0 0.46 1E-05 46.2 16.1 135 515-673 42-196 (254)
225 COG0457 NrfG FOG: TPR repeat [ 96.0 1.8 3.8E-05 42.3 24.6 194 445-642 63-268 (291)
226 KOG2114 Vacuolar assembly/sort 95.9 4.2 9.2E-05 46.2 29.5 117 77-200 339-458 (933)
227 PF13424 TPR_12: Tetratricopep 95.8 0.0085 1.8E-07 47.6 3.4 62 611-672 6-74 (78)
228 KOG1130 Predicted G-alpha GTPa 95.8 0.061 1.3E-06 54.9 9.9 128 442-569 196-342 (639)
229 PF03704 BTAD: Bacterial trans 95.8 0.08 1.7E-06 48.2 10.2 107 552-672 16-124 (146)
230 PF13525 YfiO: Outer membrane 95.8 0.48 1E-05 45.8 16.1 162 483-665 12-199 (203)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.054 1.2E-06 57.2 9.5 60 542-604 75-138 (453)
232 COG4235 Cytochrome c biogenesi 95.6 0.33 7.2E-06 48.3 13.9 100 541-643 155-260 (287)
233 KOG0543 FKBP-type peptidyl-pro 95.3 0.11 2.3E-06 53.7 9.8 138 514-673 215-355 (397)
234 PF13512 TPR_18: Tetratricopep 95.3 0.21 4.6E-06 44.1 10.3 58 588-645 20-82 (142)
235 PF09205 DUF1955: Domain of un 95.3 0.79 1.7E-05 39.4 13.1 140 518-676 13-152 (161)
236 PF13512 TPR_18: Tetratricopep 95.3 0.41 9E-06 42.3 12.0 18 626-643 115-132 (142)
237 PF00515 TPR_1: Tetratricopept 95.3 0.027 5.9E-07 36.1 3.6 33 611-643 2-34 (34)
238 KOG1258 mRNA processing protei 95.3 5.8 0.00013 43.5 32.3 182 475-659 296-490 (577)
239 COG1729 Uncharacterized protei 95.3 0.07 1.5E-06 52.3 7.8 66 606-673 176-244 (262)
240 PF07719 TPR_2: Tetratricopept 95.2 0.039 8.5E-07 35.3 4.3 33 611-643 2-34 (34)
241 PF12921 ATP13: Mitochondrial 95.1 0.16 3.4E-06 44.4 8.9 50 573-622 47-100 (126)
242 PF03704 BTAD: Bacterial trans 95.0 0.21 4.6E-06 45.3 10.2 69 510-580 65-138 (146)
243 KOG2066 Vacuolar assembly/sort 94.9 8.4 0.00018 43.6 26.6 95 524-630 611-710 (846)
244 KOG1585 Protein required for f 94.8 2.4 5.3E-05 40.7 16.2 87 580-667 152-250 (308)
245 PF12921 ATP13: Mitochondrial 94.8 0.14 3E-06 44.7 7.6 95 477-587 3-97 (126)
246 KOG1941 Acetylcholine receptor 94.8 0.41 8.9E-06 48.4 11.6 160 509-668 85-270 (518)
247 smart00299 CLH Clathrin heavy 94.6 1.5 3.3E-05 39.3 14.5 119 483-621 14-136 (140)
248 PRK15331 chaperone protein Sic 94.6 0.43 9.3E-06 43.2 10.3 91 548-642 43-136 (165)
249 PF04184 ST7: ST7 protein; In 94.4 3.4 7.5E-05 44.2 18.0 99 548-646 265-382 (539)
250 PF04184 ST7: ST7 protein; In 94.3 0.93 2E-05 48.3 13.6 191 519-726 180-382 (539)
251 KOG2610 Uncharacterized conser 94.3 0.94 2E-05 45.4 12.7 112 489-604 116-235 (491)
252 PF04053 Coatomer_WDAD: Coatom 94.2 0.36 7.8E-06 52.4 10.8 131 517-674 271-403 (443)
253 KOG4234 TPR repeat-containing 94.0 0.24 5.2E-06 45.7 7.5 90 585-674 102-198 (271)
254 COG1729 Uncharacterized protei 93.9 0.53 1.1E-05 46.3 10.2 93 509-604 144-241 (262)
255 COG4105 ComL DNA uptake lipopr 93.8 7.3 0.00016 38.2 17.7 169 486-673 44-233 (254)
256 KOG4555 TPR repeat-containing 93.6 0.37 8E-06 41.2 7.4 87 552-641 53-146 (175)
257 PF10300 DUF3808: Protein of u 93.6 2.6 5.7E-05 46.5 16.5 161 510-673 191-376 (468)
258 COG4785 NlpI Lipoprotein NlpI, 93.4 2.2 4.8E-05 40.2 12.7 177 490-675 79-268 (297)
259 KOG2114 Vacuolar assembly/sort 93.4 18 0.00039 41.4 29.1 75 585-660 712-787 (933)
260 smart00299 CLH Clathrin heavy 93.4 5.7 0.00012 35.6 16.2 42 346-388 13-54 (140)
261 KOG3941 Intermediate in Toll s 93.4 0.58 1.3E-05 45.7 9.3 111 90-200 52-186 (406)
262 COG5107 RNA14 Pre-mRNA 3'-end 93.3 13 0.00027 39.3 31.1 67 170-236 39-108 (660)
263 COG3118 Thioredoxin domain-con 93.0 2 4.4E-05 42.7 12.7 119 551-673 143-265 (304)
264 KOG4648 Uncharacterized conser 93.0 0.22 4.7E-06 49.8 6.0 93 548-643 103-198 (536)
265 PF02259 FAT: FAT domain; Int 93.0 9.9 0.00022 40.3 19.7 149 504-655 143-303 (352)
266 COG3118 Thioredoxin domain-con 92.9 6.1 0.00013 39.5 15.7 144 515-661 142-289 (304)
267 PRK09687 putative lyase; Provi 92.7 13 0.00028 37.9 25.6 134 475-619 141-276 (280)
268 PF13181 TPR_8: Tetratricopept 92.4 0.19 4.1E-06 32.1 3.3 31 612-642 3-33 (34)
269 KOG3941 Intermediate in Toll s 92.3 1 2.2E-05 44.1 9.3 108 496-604 54-185 (406)
270 PF04053 Coatomer_WDAD: Coatom 92.2 3.3 7.2E-05 45.1 14.5 146 186-398 274-425 (443)
271 PF13281 DUF4071: Domain of un 92.0 11 0.00025 39.6 17.4 69 383-451 149-227 (374)
272 PF04097 Nic96: Nup93/Nic96; 91.9 29 0.00062 40.0 22.4 49 203-253 111-159 (613)
273 PF10300 DUF3808: Protein of u 91.6 1.4 2.9E-05 48.8 11.0 143 527-673 177-334 (468)
274 KOG1585 Protein required for f 91.4 15 0.00032 35.7 16.3 143 478-634 93-251 (308)
275 KOG1941 Acetylcholine receptor 91.3 7.4 0.00016 39.8 14.4 126 513-638 128-274 (518)
276 PF00637 Clathrin: Region in C 91.0 0.21 4.5E-06 45.2 3.3 85 143-230 12-96 (143)
277 PF09613 HrpB1_HrpK: Bacterial 90.9 4.5 9.8E-05 36.6 11.4 89 551-642 19-109 (160)
278 KOG1464 COP9 signalosome, subu 90.8 7.5 0.00016 38.0 13.3 260 370-640 21-329 (440)
279 PF13176 TPR_7: Tetratricopept 90.3 0.38 8.3E-06 31.3 3.2 26 613-638 2-27 (36)
280 KOG2610 Uncharacterized conser 89.9 2.2 4.8E-05 42.9 9.3 161 519-682 115-285 (491)
281 PRK09687 putative lyase; Provi 89.5 27 0.00058 35.6 26.5 74 474-552 204-277 (280)
282 KOG3364 Membrane protein invol 89.2 3.1 6.7E-05 36.1 8.4 62 612-673 34-100 (149)
283 KOG2066 Vacuolar assembly/sort 88.9 48 0.001 37.9 23.7 76 173-251 392-467 (846)
284 PF13428 TPR_14: Tetratricopep 88.8 1.3 2.9E-05 30.2 5.2 32 509-542 3-34 (44)
285 PF04097 Nic96: Nup93/Nic96; 88.6 45 0.00098 38.4 20.2 210 279-503 116-354 (613)
286 COG3947 Response regulator con 88.5 21 0.00046 35.6 14.6 55 618-672 287-341 (361)
287 PRK10941 hypothetical protein; 88.4 1.9 4.2E-05 43.3 8.0 62 612-673 183-244 (269)
288 PF14853 Fis1_TPR_C: Fis1 C-te 88.4 1.8 3.8E-05 31.0 5.6 50 647-722 4-53 (53)
289 PF06552 TOM20_plant: Plant sp 88.0 2.5 5.3E-05 38.9 7.6 46 626-671 51-100 (186)
290 COG3629 DnrI DNA-binding trans 87.9 3.5 7.6E-05 41.3 9.4 71 476-546 153-231 (280)
291 KOG1920 IkappaB kinase complex 87.8 71 0.0015 38.5 21.7 79 515-604 947-1025(1265)
292 PF08631 SPO22: Meiosis protei 87.8 34 0.00075 34.8 23.5 21 516-536 130-150 (278)
293 PF00515 TPR_1: Tetratricopept 87.7 1.2 2.6E-05 28.3 4.1 32 508-541 2-33 (34)
294 KOG1920 IkappaB kinase complex 87.7 72 0.0016 38.5 24.5 97 381-506 958-1056(1265)
295 KOG4648 Uncharacterized conser 87.7 1.4 3E-05 44.4 6.2 87 514-611 104-199 (536)
296 COG3629 DnrI DNA-binding trans 87.5 5.4 0.00012 40.0 10.4 79 507-587 153-236 (280)
297 PF13176 TPR_7: Tetratricopept 87.5 1.2 2.7E-05 28.8 4.1 26 509-534 1-26 (36)
298 PF02259 FAT: FAT domain; Int 87.5 15 0.00033 38.9 15.1 65 609-673 145-213 (352)
299 KOG0376 Serine-threonine phosp 87.3 1.3 2.9E-05 46.9 6.3 87 586-672 12-100 (476)
300 KOG1586 Protein required for f 87.2 16 0.00035 35.2 12.6 24 621-644 165-188 (288)
301 KOG1550 Extracellular protein 87.1 60 0.0013 36.9 21.9 176 491-673 343-538 (552)
302 PF14853 Fis1_TPR_C: Fis1 C-te 87.1 1.7 3.6E-05 31.2 4.8 32 615-646 6-37 (53)
303 PRK12798 chemotaxis protein; R 86.9 46 0.001 35.3 23.9 205 489-720 125-347 (421)
304 KOG0890 Protein kinase of the 86.9 1.1E+02 0.0025 39.9 30.9 309 347-674 1390-1732(2382)
305 PF07035 Mic1: Colon cancer-as 86.6 17 0.00037 33.5 12.3 133 124-267 15-148 (167)
306 PF08631 SPO22: Meiosis protei 86.5 41 0.00088 34.3 26.2 61 481-542 126-192 (278)
307 PF10602 RPN7: 26S proteasome 85.4 7.3 0.00016 36.5 9.7 58 478-535 38-101 (177)
308 COG4785 NlpI Lipoprotein NlpI, 85.4 2.6 5.7E-05 39.7 6.4 88 554-644 77-167 (297)
309 PF10345 Cohesin_load: Cohesin 85.3 79 0.0017 36.6 35.1 49 623-671 547-604 (608)
310 PF13170 DUF4003: Protein of u 85.2 20 0.00043 36.8 13.5 63 524-587 160-226 (297)
311 PF09613 HrpB1_HrpK: Bacterial 84.8 2.2 4.8E-05 38.5 5.6 50 623-672 23-72 (160)
312 PRK11619 lytic murein transgly 84.8 83 0.0018 36.4 31.6 116 520-638 254-374 (644)
313 COG2976 Uncharacterized protei 84.4 35 0.00075 32.1 13.0 114 525-643 70-192 (207)
314 TIGR02561 HrpB1_HrpK type III 84.3 2.6 5.6E-05 37.4 5.6 53 622-674 22-74 (153)
315 PF13431 TPR_17: Tetratricopep 84.2 1.1 2.4E-05 28.6 2.6 24 575-598 9-33 (34)
316 KOG1308 Hsp70-interacting prot 84.0 0.69 1.5E-05 46.7 2.3 87 591-677 127-215 (377)
317 COG4649 Uncharacterized protei 83.6 36 0.00078 31.2 13.9 121 517-638 68-195 (221)
318 COG4649 Uncharacterized protei 83.5 18 0.00039 33.1 10.5 51 386-436 69-124 (221)
319 KOG1258 mRNA processing protei 83.0 83 0.0018 35.0 30.0 128 103-233 45-180 (577)
320 KOG4570 Uncharacterized conser 82.9 11 0.00023 38.0 9.7 97 471-571 59-164 (418)
321 smart00028 TPR Tetratricopepti 82.9 2.4 5.1E-05 25.6 3.9 31 612-642 3-33 (34)
322 PF10602 RPN7: 26S proteasome 82.9 16 0.00034 34.3 10.8 94 509-604 38-139 (177)
323 PF07719 TPR_2: Tetratricopept 82.8 2.8 6E-05 26.4 4.1 27 509-535 3-29 (34)
324 PF13374 TPR_10: Tetratricopep 82.7 2.4 5.2E-05 28.2 4.0 27 612-638 4-30 (42)
325 PF13170 DUF4003: Protein of u 82.5 55 0.0012 33.6 15.4 62 523-584 78-147 (297)
326 PF06552 TOM20_plant: Plant sp 81.5 13 0.00029 34.3 9.2 44 626-676 96-139 (186)
327 KOG1586 Protein required for f 81.3 54 0.0012 31.8 17.0 57 589-645 165-230 (288)
328 KOG0276 Vesicle coat complex C 81.3 20 0.00043 39.4 11.8 98 286-400 649-746 (794)
329 PF09205 DUF1955: Domain of un 81.3 36 0.00079 29.7 13.4 60 511-571 90-149 (161)
330 PF11207 DUF2989: Protein of u 81.2 4.7 0.0001 38.0 6.4 74 590-664 119-198 (203)
331 PF13174 TPR_6: Tetratricopept 81.0 2.6 5.5E-05 26.3 3.4 28 615-642 5-32 (33)
332 TIGR02561 HrpB1_HrpK type III 81.0 25 0.00054 31.4 10.4 85 554-641 22-108 (153)
333 TIGR02508 type_III_yscG type I 78.9 22 0.00047 29.2 8.4 87 53-143 21-107 (115)
334 COG5107 RNA14 Pre-mRNA 3'-end 78.0 1E+02 0.0022 33.0 33.1 69 70-138 39-111 (660)
335 PF09986 DUF2225: Uncharacteri 77.6 6.5 0.00014 38.1 6.5 64 610-673 118-194 (214)
336 PF07035 Mic1: Colon cancer-as 77.3 60 0.0013 29.9 15.3 54 279-332 94-147 (167)
337 KOG0276 Vesicle coat complex C 77.1 26 0.00055 38.7 11.0 147 489-669 599-746 (794)
338 COG1747 Uncharacterized N-term 77.1 1.2E+02 0.0025 33.1 19.8 190 475-671 65-286 (711)
339 PF02284 COX5A: Cytochrome c o 77.0 23 0.00051 29.2 8.2 60 525-586 28-87 (108)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 77.0 22 0.00049 29.0 8.0 63 522-586 22-84 (103)
341 KOG0545 Aryl-hydrocarbon recep 77.0 24 0.00052 34.3 9.6 89 585-673 185-293 (329)
342 TIGR02508 type_III_yscG type I 76.9 33 0.00072 28.2 9.0 61 281-344 46-106 (115)
343 PF13181 TPR_8: Tetratricopept 76.9 3.8 8.2E-05 25.8 3.3 27 509-535 3-29 (34)
344 PRK13800 putative oxidoreducta 76.3 1.9E+02 0.0042 35.2 23.7 151 474-637 696-847 (897)
345 PF13374 TPR_10: Tetratricopep 76.2 6 0.00013 26.2 4.4 28 508-535 3-30 (42)
346 PF07721 TPR_4: Tetratricopept 76.2 1.8 4E-05 25.6 1.5 23 646-668 3-25 (26)
347 PF11207 DUF2989: Protein of u 75.2 25 0.00054 33.3 9.3 74 524-598 123-198 (203)
348 KOG1550 Extracellular protein 74.6 1.2E+02 0.0026 34.5 16.7 155 517-678 259-431 (552)
349 KOG4570 Uncharacterized conser 73.8 19 0.0004 36.3 8.4 100 269-370 59-165 (418)
350 PRK15180 Vi polysaccharide bio 73.3 28 0.00061 37.1 9.9 119 519-642 301-423 (831)
351 PF04910 Tcf25: Transcriptiona 71.9 1.4E+02 0.0031 31.7 17.7 96 541-641 99-224 (360)
352 KOG4234 TPR repeat-containing 71.8 30 0.00066 32.5 8.7 94 515-643 103-201 (271)
353 PF00637 Clathrin: Region in C 71.8 2.6 5.6E-05 37.9 2.1 85 346-433 13-97 (143)
354 PF11768 DUF3312: Protein of u 71.6 48 0.001 36.5 11.6 57 480-536 412-473 (545)
355 KOG0292 Vesicle coat complex C 71.3 9.8 0.00021 43.5 6.6 119 520-670 606-724 (1202)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 70.8 21 0.00044 29.2 6.5 60 120-181 24-84 (103)
357 PF13174 TPR_6: Tetratricopept 70.6 2.7 5.8E-05 26.2 1.4 28 646-673 2-29 (33)
358 PF13934 ELYS: Nuclear pore co 69.7 94 0.002 30.5 12.5 106 510-624 79-186 (226)
359 COG0790 FOG: TPR repeat, SEL1 69.7 1.4E+02 0.003 30.6 16.0 47 625-674 206-267 (292)
360 PF07721 TPR_4: Tetratricopept 68.4 8.8 0.00019 22.6 3.2 21 582-602 5-25 (26)
361 PHA02875 ankyrin repeat protei 68.3 1.8E+02 0.004 31.5 17.3 160 130-302 22-193 (413)
362 KOG4279 Serine/threonine prote 67.9 63 0.0014 36.7 11.5 183 409-642 204-398 (1226)
363 PRK15180 Vi polysaccharide bio 67.7 45 0.00097 35.7 10.0 129 554-686 301-431 (831)
364 KOG0551 Hsp90 co-chaperone CNS 66.8 20 0.00044 36.4 7.1 93 578-670 81-179 (390)
365 PF07720 TPR_3: Tetratricopept 66.7 11 0.00024 24.4 3.6 32 612-643 3-36 (36)
366 COG4455 ImpE Protein of avirul 66.3 16 0.00035 34.7 5.9 64 581-644 4-69 (273)
367 PRK10941 hypothetical protein; 65.5 25 0.00055 35.4 7.7 66 581-646 184-251 (269)
368 KOG4507 Uncharacterized conser 64.9 16 0.00034 40.0 6.3 98 553-653 618-719 (886)
369 PF13929 mRNA_stabil: mRNA sta 62.9 1.8E+02 0.0039 29.5 13.5 53 271-323 199-256 (292)
370 COG1747 Uncharacterized N-term 61.9 2.5E+02 0.0054 30.8 22.9 156 408-570 68-233 (711)
371 PF09670 Cas_Cas02710: CRISPR- 61.1 1.1E+02 0.0024 32.8 12.1 120 519-639 143-270 (379)
372 KOG0890 Protein kinase of the 61.0 5.3E+02 0.012 34.3 34.5 126 278-412 1424-1552(2382)
373 COG4455 ImpE Protein of avirul 60.7 1.6E+02 0.0036 28.3 12.1 122 510-643 4-138 (273)
374 PF10345 Cohesin_load: Cohesin 60.5 3.2E+02 0.0069 31.6 35.4 163 102-265 58-251 (608)
375 PF07575 Nucleopor_Nup85: Nup8 60.4 3.1E+02 0.0067 31.4 16.8 52 77-129 118-174 (566)
376 COG4976 Predicted methyltransf 60.4 13 0.00029 35.6 4.3 59 587-645 4-64 (287)
377 COG3947 Response regulator con 60.0 2E+02 0.0043 29.1 12.5 71 509-581 281-356 (361)
378 PHA02875 ankyrin repeat protei 59.9 2.6E+02 0.0056 30.3 17.5 148 382-542 72-230 (413)
379 PF06957 COPI_C: Coatomer (COP 59.6 37 0.00079 36.5 7.9 40 604-643 292-333 (422)
380 PF02284 COX5A: Cytochrome c o 59.6 35 0.00075 28.3 5.9 47 602-648 37-83 (108)
381 KOG3807 Predicted membrane pro 59.1 88 0.0019 31.8 9.8 22 627-648 379-400 (556)
382 KOG4642 Chaperone-dependent E3 58.2 19 0.0004 34.9 4.9 49 622-670 56-104 (284)
383 PRK13342 recombination factor 58.1 2.3E+02 0.0049 30.9 14.2 47 408-454 229-278 (413)
384 smart00028 TPR Tetratricopepti 57.6 19 0.00042 21.2 3.7 27 509-535 3-29 (34)
385 KOG4642 Chaperone-dependent E3 57.5 1.2E+02 0.0026 29.6 10.0 80 487-568 21-104 (284)
386 PF14561 TPR_20: Tetratricopep 55.3 13 0.00028 30.3 3.0 44 630-673 8-51 (90)
387 KOG1464 COP9 signalosome, subu 55.0 2.3E+02 0.0049 28.2 13.9 115 287-401 40-171 (440)
388 PRK13342 recombination factor 54.7 2.7E+02 0.0059 30.3 14.1 43 206-248 229-274 (413)
389 PF04910 Tcf25: Transcriptiona 54.5 1.6E+02 0.0034 31.4 11.8 64 609-672 99-167 (360)
390 PF10579 Rapsyn_N: Rapsyn N-te 53.9 42 0.0009 26.3 5.3 46 519-564 18-65 (80)
391 PF15015 NYD-SP12_N: Spermatog 52.5 91 0.002 33.0 9.0 83 666-761 309-395 (569)
392 KOG1811 Predicted Zn2+-binding 52.3 2.8E+02 0.006 30.9 12.8 99 578-679 556-655 (1141)
393 KOG3824 Huntingtin interacting 52.3 20 0.00042 35.9 4.1 61 589-649 127-189 (472)
394 KOG2063 Vacuolar assembly/sort 52.1 4.9E+02 0.011 31.2 17.5 129 206-351 506-637 (877)
395 KOG4507 Uncharacterized conser 51.7 89 0.0019 34.6 9.1 133 538-673 567-705 (886)
396 TIGR03504 FimV_Cterm FimV C-te 50.9 26 0.00057 24.0 3.4 25 311-335 5-29 (44)
397 PF13762 MNE1: Mitochondrial s 50.5 1.3E+02 0.0027 27.1 8.6 51 202-252 77-128 (145)
398 PF13929 mRNA_stabil: mRNA sta 50.5 2.9E+02 0.0062 28.1 14.8 52 373-424 200-256 (292)
399 PRK13800 putative oxidoreducta 50.4 5.6E+02 0.012 31.4 25.9 255 294-570 624-880 (897)
400 TIGR03504 FimV_Cterm FimV C-te 49.8 33 0.00071 23.5 3.8 24 513-536 5-28 (44)
401 PF10579 Rapsyn_N: Rapsyn N-te 48.0 43 0.00093 26.3 4.5 47 554-600 18-65 (80)
402 PF10366 Vps39_1: Vacuolar sor 47.9 1.1E+02 0.0024 25.9 7.6 27 408-434 41-67 (108)
403 PF04090 RNA_pol_I_TF: RNA pol 47.9 2E+02 0.0043 27.4 9.9 27 509-535 43-69 (199)
404 PF12862 Apc5: Anaphase-promot 47.7 35 0.00077 27.9 4.6 52 621-672 9-69 (94)
405 PF14863 Alkyl_sulf_dimr: Alky 47.4 43 0.00093 29.9 5.3 68 594-664 57-124 (141)
406 PF10366 Vps39_1: Vacuolar sor 47.3 1.1E+02 0.0025 25.8 7.6 27 206-232 41-67 (108)
407 PF14561 TPR_20: Tetratricopep 47.2 94 0.002 25.2 6.8 62 609-670 21-85 (90)
408 smart00386 HAT HAT (Half-A-TPR 46.9 20 0.00044 21.8 2.4 28 624-651 1-28 (33)
409 KOG2581 26S proteasome regulat 46.8 3.9E+02 0.0084 28.5 12.9 94 549-643 176-280 (493)
410 PF11846 DUF3366: Domain of un 46.4 61 0.0013 30.8 6.7 34 608-641 142-175 (193)
411 PF13934 ELYS: Nuclear pore co 46.4 3E+02 0.0064 27.0 11.5 114 488-610 90-204 (226)
412 PF13762 MNE1: Mitochondrial s 45.6 2.3E+02 0.0049 25.5 10.4 49 506-554 78-127 (145)
413 COG2976 Uncharacterized protei 45.2 2.8E+02 0.006 26.4 13.3 85 514-604 96-185 (207)
414 PRK11619 lytic murein transgly 45.1 5.6E+02 0.012 29.8 36.3 176 478-664 314-496 (644)
415 COG2912 Uncharacterized conser 44.0 1.2E+02 0.0026 30.3 8.2 59 615-673 186-244 (269)
416 PF07163 Pex26: Pex26 protein; 43.8 2.6E+02 0.0055 28.2 10.2 88 514-604 90-184 (309)
417 KOG3824 Huntingtin interacting 43.3 26 0.00056 35.1 3.4 51 620-670 126-176 (472)
418 KOG4279 Serine/threonine prote 42.5 1.1E+02 0.0023 35.0 8.2 68 508-578 202-280 (1226)
419 PF14689 SPOB_a: Sensor_kinase 42.1 52 0.0011 24.5 4.2 30 541-570 22-51 (62)
420 COG2178 Predicted RNA-binding 42.0 3.1E+02 0.0067 26.0 9.9 51 486-536 39-98 (204)
421 PF11846 DUF3366: Domain of un 42.0 80 0.0017 30.0 6.8 51 554-604 120-170 (193)
422 PF09477 Type_III_YscG: Bacter 41.5 2.2E+02 0.0047 24.0 9.4 78 457-537 22-99 (116)
423 TIGR02414 pepN_proteo aminopep 41.4 5E+02 0.011 31.4 14.3 152 511-666 676-836 (863)
424 PF04190 DUF410: Protein of un 41.1 3.9E+02 0.0084 26.9 13.4 81 577-673 89-170 (260)
425 PF12862 Apc5: Anaphase-promot 41.0 75 0.0016 26.0 5.5 26 615-640 46-71 (94)
426 COG4941 Predicted RNA polymera 40.2 3.2E+02 0.007 28.3 10.4 129 504-645 261-400 (415)
427 KOG3364 Membrane protein invol 40.1 1E+02 0.0022 27.2 6.1 31 615-645 76-106 (149)
428 PF15469 Sec5: Exocyst complex 39.9 3.2E+02 0.007 25.6 11.5 25 547-571 91-115 (182)
429 KOG2422 Uncharacterized conser 38.8 6.1E+02 0.013 28.5 14.3 53 516-568 351-404 (665)
430 KOG4521 Nuclear pore complex, 38.3 6.1E+02 0.013 31.1 13.6 104 484-595 928-1071(1480)
431 KOG2471 TPR repeat-containing 38.2 5.7E+02 0.012 28.0 12.5 61 617-680 213-273 (696)
432 PF09670 Cas_Cas02710: CRISPR- 37.2 2.8E+02 0.006 29.8 10.5 52 551-604 140-195 (379)
433 KOG4077 Cytochrome c oxidase, 37.1 2.2E+02 0.0047 24.8 7.4 60 525-586 67-126 (149)
434 cd08819 CARD_MDA5_2 Caspase ac 36.8 1.4E+02 0.0031 24.0 5.9 65 56-122 21-85 (88)
435 PRK14015 pepN aminopeptidase N 36.6 6.7E+02 0.014 30.5 14.4 121 545-666 717-846 (875)
436 PF15161 Neuropep_like: Neurop 36.2 14 0.0003 26.1 0.3 17 767-784 11-27 (65)
437 PHA02537 M terminase endonucle 36.0 4.3E+02 0.0093 25.9 11.8 24 518-541 94-118 (230)
438 KOG1308 Hsp70-interacting prot 35.6 31 0.00068 35.3 2.8 84 586-670 156-241 (377)
439 PRK10564 maltose regulon perip 35.3 64 0.0014 32.7 4.9 41 509-549 259-299 (303)
440 cd00280 TRFH Telomeric Repeat 34.9 1.8E+02 0.0039 27.2 7.1 30 616-646 117-146 (200)
441 PF11768 DUF3312: Protein of u 34.9 3.7E+02 0.0081 29.9 10.8 62 379-440 412-478 (545)
442 TIGR02710 CRISPR-associated pr 34.5 4.4E+02 0.0095 28.1 11.0 26 516-541 139-164 (380)
443 PF11663 Toxin_YhaV: Toxin wit 34.2 51 0.0011 28.9 3.4 33 114-148 106-138 (140)
444 TIGR01503 MthylAspMut_E methyl 34.1 2E+02 0.0043 31.2 8.4 122 456-584 69-217 (480)
445 PF14689 SPOB_a: Sensor_kinase 33.0 64 0.0014 24.0 3.5 27 509-535 25-51 (62)
446 COG0790 FOG: TPR repeat, SEL1 32.8 5.4E+02 0.012 26.1 18.8 147 490-641 91-268 (292)
447 PRK10564 maltose regulon perip 32.5 64 0.0014 32.7 4.4 43 202-244 254-297 (303)
448 PF11663 Toxin_YhaV: Toxin wit 31.4 52 0.0011 28.8 3.1 32 418-451 107-138 (140)
449 PF09477 Type_III_YscG: Bacter 31.3 3.2E+02 0.007 23.1 9.8 79 254-335 21-99 (116)
450 PF07163 Pex26: Pex26 protein; 31.1 2.9E+02 0.0062 27.9 8.3 86 109-196 89-181 (309)
451 PF08225 Antimicrobial19: Pseu 30.8 22 0.00049 19.4 0.5 12 773-784 10-21 (23)
452 PF00244 14-3-3: 14-3-3 protei 30.8 5.3E+02 0.012 25.4 12.7 162 513-675 7-200 (236)
453 cd02679 MIT_spastin MIT: domai 30.7 91 0.002 24.6 4.1 47 624-673 22-68 (79)
454 COG5191 Uncharacterized conser 30.3 58 0.0013 32.9 3.6 72 577-648 106-180 (435)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 30.2 3.7E+02 0.0081 23.4 8.8 42 525-566 81-123 (126)
456 PF04781 DUF627: Protein of un 29.8 3.3E+02 0.0071 23.2 7.4 20 516-535 5-24 (111)
457 COG4976 Predicted methyltransf 29.6 86 0.0019 30.4 4.4 55 621-675 6-60 (287)
458 PF11838 ERAP1_C: ERAP1-like C 29.5 6.5E+02 0.014 26.0 18.0 84 556-639 144-230 (324)
459 KOG4077 Cytochrome c oxidase, 29.4 2.2E+02 0.0047 24.8 6.2 47 323-369 67-113 (149)
460 PF11838 ERAP1_C: ERAP1-like C 29.2 6.5E+02 0.014 25.9 17.8 80 457-536 146-230 (324)
461 PF11848 DUF3368: Domain of un 29.1 1.4E+02 0.003 20.8 4.4 33 114-146 13-45 (48)
462 cd08819 CARD_MDA5_2 Caspase ac 28.8 3.1E+02 0.0068 22.1 7.0 38 488-526 48-85 (88)
463 KOG2062 26S proteasome regulat 28.8 9.9E+02 0.021 27.9 33.6 31 234-267 208-238 (929)
464 PF04190 DUF410: Protein of un 28.5 6.2E+02 0.013 25.4 18.6 83 474-571 88-170 (260)
465 PF11848 DUF3368: Domain of un 28.3 1.8E+02 0.0038 20.3 4.8 33 316-348 13-45 (48)
466 smart00777 Mad3_BUB1_I Mad3/BU 28.0 3.1E+02 0.0067 23.9 7.3 41 526-566 82-123 (125)
467 PF11817 Foie-gras_1: Foie gra 26.9 2.1E+02 0.0045 28.5 7.1 16 313-328 18-33 (247)
468 KOG1498 26S proteasome regulat 26.9 8E+02 0.017 26.2 19.2 192 473-693 49-261 (439)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 26.7 4.3E+02 0.0093 23.0 8.3 58 543-603 66-124 (126)
470 COG4941 Predicted RNA polymera 26.2 7.6E+02 0.017 25.7 10.8 115 493-610 273-398 (415)
471 PF12968 DUF3856: Domain of Un 26.2 4.3E+02 0.0094 22.9 11.6 22 649-670 105-126 (144)
472 COG5108 RPO41 Mitochondrial DN 26.1 3.2E+02 0.0068 31.0 8.4 71 512-587 33-112 (1117)
473 PHA03100 ankyrin repeat protei 25.3 9.4E+02 0.02 26.5 15.6 226 123-364 48-304 (480)
474 KOG2396 HAT (Half-A-TPR) repea 24.5 9.9E+02 0.021 26.5 34.1 101 538-642 455-563 (568)
475 PF10475 DUF2450: Protein of u 24.2 3.5E+02 0.0076 27.7 8.3 52 381-434 104-155 (291)
476 PF09986 DUF2225: Uncharacteri 24.2 4.8E+02 0.01 25.3 8.8 21 619-639 174-194 (214)
477 KOG0545 Aryl-hydrocarbon recep 24.0 7.2E+02 0.016 24.7 10.1 58 585-642 237-296 (329)
478 PF10255 Paf67: RNA polymerase 23.2 1.2E+02 0.0025 32.7 4.6 27 644-670 164-190 (404)
479 KOG2659 LisH motif-containing 23.1 7.1E+02 0.015 24.3 10.7 102 528-634 14-127 (228)
480 KOG2471 TPR repeat-containing 23.0 1E+03 0.023 26.2 12.2 104 553-656 251-381 (696)
481 TIGR02710 CRISPR-associated pr 22.9 9.5E+02 0.021 25.7 11.7 48 485-532 139-196 (380)
482 KOG0686 COP9 signalosome, subu 22.8 9.7E+02 0.021 25.7 11.7 58 478-535 152-215 (466)
483 smart00638 LPD_N Lipoprotein N 22.5 1.2E+03 0.026 26.6 24.4 13 511-523 464-476 (574)
484 COG5187 RPN7 26S proteasome re 22.0 3.2E+02 0.0069 27.6 6.8 32 573-604 110-141 (412)
485 PRK11639 zinc uptake transcrip 21.8 2.8E+02 0.006 25.7 6.4 61 534-596 18-78 (169)
486 PF11123 DNA_Packaging_2: DNA 21.6 2.7E+02 0.0059 21.5 4.8 60 491-571 12-74 (82)
487 PF08967 DUF1884: Domain of un 21.2 1E+02 0.0022 24.2 2.6 25 703-727 7-31 (85)
488 PF07575 Nucleopor_Nup85: Nup8 21.0 1.3E+03 0.027 26.4 21.5 42 426-467 390-431 (566)
489 PF11525 CopK: Copper resistan 20.9 36 0.00078 25.6 0.2 20 789-808 9-28 (73)
490 COG5108 RPO41 Mitochondrial DN 20.6 5.8E+02 0.013 29.1 9.1 47 345-391 33-81 (1117)
491 PRK11639 zinc uptake transcrip 20.3 3E+02 0.0064 25.5 6.2 50 204-253 25-74 (169)
492 PF02847 MA3: MA3 domain; Int 20.0 2.5E+02 0.0054 23.6 5.4 21 412-432 8-28 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-148 Score=1317.98 Aligned_cols=769 Identities=40% Similarity=0.756 Sum_probs=754.2
Q ss_pred CCcchHHHHHHhhc---ChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCCCChhHHHHHHHHH
Q 003531 38 IYRHPSALLLEVCT---SLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGY 113 (812)
Q Consensus 38 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 113 (812)
|+..++..+++.|. .+..|.++|+.+++.|+. .+..+. .|+++|+++|++++|+++|++|++||+++||+||++|
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 56667778888886 678899999999999987 566666 9999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 003531 114 AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAY 193 (812)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 193 (812)
++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+.++|..+.+.|+.||..++|+||++|+++|++++|.
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003531 194 KMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI 273 (812)
Q Consensus 194 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 273 (812)
++|++|++||.++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL 353 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 353 (812)
..+||+||++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 354 GDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 354 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHH
Q 003531 434 SKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVM 513 (812)
Q Consensus 434 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l 513 (812)
. +++||.+||+++|.+|++.|.++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .+|+++||+|
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~l 560 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNIL 560 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHH
Confidence 6 5999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
|.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|+|+|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 594 LNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 594 ~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
++||.+++++|+++||..+|++|+++|+.+|+.+.|+.+++++++++|+++++|+.|+++|+..|+|++|.++++.|+++
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhhhhhchhccHHHHHHH
Q 003531 674 GLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQENLLSSHSEKLAIAF 752 (812)
Q Consensus 674 g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~~~~~~~hse~la~~~ 752 (812)
|++|+||+||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.. + +++|++|+..|++||||||+||
T Consensus 721 g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~ 799 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAF 799 (857)
T ss_pred CCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 6 5588899999999999999999
Q ss_pred ccccCCCCCcEEEEecccccCCchhhhhhhhcccCceEEEecCCcccccccccccCCC
Q 003531 753 GLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGD 810 (812)
Q Consensus 753 ~~~~~~~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~~g~csc~~ 810 (812)
|||+||+|+||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 800 ~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 800 GLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-125 Score=1093.95 Aligned_cols=612 Identities=38% Similarity=0.654 Sum_probs=605.1
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 201 ERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEG-RRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA 279 (812)
Q Consensus 201 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3677899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 280 LVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 280 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKP 439 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 439 (812)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 003531 440 DSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGT 519 (812)
Q Consensus 440 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 519 (812)
|..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWD 599 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 599 (812)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCC
Q 003531 600 FIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 600 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 679 (812)
++++|++.||..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhhhhhchhccHHHHHHHccccCC
Q 003531 680 GCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQENLLSSHSEKLAIAFGLLNSS 758 (812)
Q Consensus 680 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 758 (812)
|+|||++++++|.|++||.+||+.++||++|.+|..+|++.||+||+.+ +||+++++|+..|++||||||+|||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCcEEEEecccccCCchhhhhhhhcccCceEEEecCCcccccccccccCCCCC
Q 003531 759 PGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812 (812)
Q Consensus 759 ~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~~g~csc~~~w 812 (812)
+|.||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-85 Score=778.08 Aligned_cols=688 Identities=28% Similarity=0.416 Sum_probs=612.4
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 003531 100 DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV 179 (812)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 179 (812)
.+...++|.++++|++.|++++|+.+|+.|...|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
|++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
++|..+++.|+.||..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHc
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQN 419 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 419 (812)
..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALF 499 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 499 (812)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh
Q 003531 500 DMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD 579 (812)
Q Consensus 500 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 579 (812)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.+|++.|.++.|.+++..+.+. |+.++..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 999999999999999999999999999999999986 59999999999999999999999999999999976 9999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCccchhhHhhhhhhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFE--LDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~ 657 (812)
++++|+++|+++|++++|.++|+++ .||.++|++|+.+|.++|+.++|.++|++|.+ ..| |..+|..+...|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc
Confidence 9999999999999999999999999 89999999999999999999999999999987 567 467889999999999
Q ss_pred CCchHHHHHHHHHH-HcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCCc-cccchh
Q 003531 658 SMWDKLAKVRTIME-KKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDVEDY 735 (812)
Q Consensus 658 g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~~-~~~~~~ 735 (812)
|++++|.++|+.|. +.|+.++...-. ..+.....-+. +++..+.+++++..||...+ .-+..|
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~--------~lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYA--------CVVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHH--------HHHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999 567754321100 00000011112 33444455566789997652 222233
Q ss_pred hhhhhchhccHHHH-HHHccccCCCCCcEEEEecccccCCchhhhhhhhcccCceEE-------EecCCccccccccccc
Q 003531 736 VQENLLSSHSEKLA-IAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREII-------VRDMHRFHCFKNGVCS 807 (812)
Q Consensus 736 ~~~~~~~~hse~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~-------~~d~~~~h~~~~g~cs 807 (812)
...+-+- --|+.| ..+.+.+...+.-+-+..-....|+..++.+....|..+.+- +--.+..|-|..|.-|
T Consensus 668 ~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 668 RIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 2111110 012222 234555555554433333345688999999998888776321 1113577888777554
Q ss_pred C
Q 003531 808 C 808 (812)
Q Consensus 808 c 808 (812)
-
T Consensus 747 h 747 (857)
T PLN03077 747 H 747 (857)
T ss_pred C
Confidence 3
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.4e-71 Score=638.10 Aligned_cols=474 Identities=27% Similarity=0.439 Sum_probs=458.8
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCC-CCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHH
Q 003531 100 DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDD-VAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTG 178 (812)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 178 (812)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHH
Q 003531 179 VVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIG 258 (812)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 258 (812)
|+++|+++|++++|+++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 003531 259 KAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEP 338 (812)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (812)
+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 003531 339 TNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQ 418 (812)
Q Consensus 339 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 418 (812)
|..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR-SCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
.|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHhcC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 498 LFDMMN-ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 498 ~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
+|++|. +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999998 78999999999999999999999999999976 5665 568999999999999999999999999876 775
Q ss_pred C
Q 003531 576 P 576 (812)
Q Consensus 576 p 576 (812)
+
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 4
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-70 Score=630.64 Aligned_cols=521 Identities=15% Similarity=0.241 Sum_probs=476.0
Q ss_pred chHHH-HHHHHhhcCCChhHHHHhhccCCCCChh-----HHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 003531 72 HLFQT-KLVSLFCKYNSLSDAARVFEPIPDKLDA-----LYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLL 145 (812)
Q Consensus 72 ~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 145 (812)
+.... .++..|+++|++++|+++|+.|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+.+|
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 33444 8889999999999999999999876544 456677889999999999999999974 9999999999
Q ss_pred HHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCChH
Q 003531 146 KVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP----ERDLVSWNTIVAGFAQNGFAE 221 (812)
Q Consensus 146 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~ 221 (812)
.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999999999999999999999999999999999999998 489999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003531 222 LALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR--AGFDSIVNVSTALVDMYAKCGRVETARLVFDG 299 (812)
Q Consensus 222 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 299 (812)
+|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 67899999999999999999999999999999
Q ss_pred CCC----CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCCh
Q 003531 300 MKS----RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDV 375 (812)
Q Consensus 300 m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 375 (812)
|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 986 6779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH
Q 003531 376 SMTNSLISMYSKCKKVDRAADIFSKLQ----GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL 451 (812)
Q Consensus 376 ~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 451 (812)
.+|++||.+|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999995 5789999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHH
Q 003531 452 AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA----KCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 452 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...| .++|+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TSWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HHHHH
Confidence 999999999999999999999999999999998743 44444444444443333333344 45699
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--- 604 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--- 604 (812)
.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++++. .++|..++++|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 99999999999999999999998777888888888888777644 6777889999999988532 47899999999
Q ss_pred CCCCCHH
Q 003531 605 PIEPGIT 611 (812)
Q Consensus 605 ~~~pd~~ 611 (812)
++.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 6777764
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-65 Score=592.91 Aligned_cols=502 Identities=17% Similarity=0.238 Sum_probs=419.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcch-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHh
Q 003531 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVS-----WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVS 244 (812)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 244 (812)
.++...|..++..++++|++++|.++|++|++++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4556666666666777777777777777776655443 33445556777777777777776653 67777777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC----CCCchhHHHHHHHHHhCCC
Q 003531 245 ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK----SRNVVSWNSMIAAYVEGGN 320 (812)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 320 (812)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 777777777777777777777777777777777888888888888888888888887 3788888888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhh--cCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 003531 321 PEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQ--LKLGTDVSMTNSLISMYSKCKKVDRAADIF 398 (812)
Q Consensus 321 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (812)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888889989999999999999999999999988876 578889999999999999999999999999
Q ss_pred HhcCCC----CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 399 SKLQGK----TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 399 ~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
+.|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 998765 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN----ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAIS 550 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 550 (812)
+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999985 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHHHhC---
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG----RAG-------------------RLNEAWDFIQKM--- 604 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~~--- 604 (812)
+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999876 99999999999987633 222 346899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCccchhhHhhhhhhcCCc-hHHHHHHHHHHHcCCccCC
Q 003531 605 PIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-LDPDEGGYHVLLANIYAAASMW-DKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 605 ~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~~~~ 679 (812)
++.||..+|+++++.+.+.+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 7899999999999777788888888888877642 2344567888888876 444 5899999999999997554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-34 Score=348.22 Aligned_cols=611 Identities=13% Similarity=0.089 Sum_probs=274.3
Q ss_pred hhcChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCC--C-ChhHHHHHHHHHHhcCCchHHHHH
Q 003531 49 VCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPD--K-LDALYHTMLKGYAKFASLDDAVSF 125 (812)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 125 (812)
..++.+.|...+..+.+.... ...........+...|++++|...|+...+ + +...+..+...+...|++++|...
T Consensus 239 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 239 EAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 344566666666666554433 111111222333445556666555554321 1 112222333444455555555555
Q ss_pred HHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---C
Q 003531 126 LIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---R 202 (812)
Q Consensus 126 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~ 202 (812)
|.++.... +.+...+..+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.+ .
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 55554432 2223334444444555555555555555554443 33444455555555555555555555554432 1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVD 282 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 282 (812)
+...|..+...+...|++++|++.|+.+...... +......++..+.+.|+++.|..++..+.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 2234444444555555555555555554443211 11222333344444555555555554444321 233344444455
Q ss_pred HHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 283 MYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
.|...|+.++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+.+++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544332 223334444444445555555555555544432 12233444444444444555555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55544444433 22333344444445555555555555444432 123344444444555555555555554444321
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVM 513 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~l 513 (812)
+.+...+..+..++...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 1122333444444444455555555444444332 22334444444444445555555544444431 233344444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
...|...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 44444445555555555444442 233344444444444444444444444444432 11234444444444444444
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
+++|.+.|+++ ...| ++.+++.+++.+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444 1122 33444444444444444 444444444444444444444444444444444444444444444
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
+.
T Consensus 865 ~~ 866 (899)
T TIGR02917 865 NI 866 (899)
T ss_pred hh
Confidence 43
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-33 Score=338.52 Aligned_cols=610 Identities=12% Similarity=0.034 Sum_probs=479.2
Q ss_pred HhhcChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCC---CChhHHHHHHHHHHhcCCchHHH
Q 003531 48 EVCTSLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPD---KLDALYHTMLKGYAKFASLDDAV 123 (812)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 123 (812)
..-++.+.|...+..+++..+. +.... .++..+...|++++|...|+.+.. .+...+......+...|++++|+
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPN--NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 3345888888888888776544 44455 788888889999999988886532 22233333444556788999999
Q ss_pred HHHHHhHhCCCCCCc-chHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC-
Q 003531 124 SFLIRMRYDDVAPVV-YNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE- 201 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~- 201 (812)
..|+++.+.+ |+. ..+..+...+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 282 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 358 (899)
T TIGR02917 282 ETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358 (899)
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998887754 432 233444556678889999999999888775 45667778888888899999999998887764
Q ss_pred --CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 202 --RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA 279 (812)
Q Consensus 202 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (812)
.+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|+.+.|...+..+.+.... .......
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 436 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLL 436 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHH
Confidence 345678888888999999999999999887753 223445666777778889999999999888876532 3445566
Q ss_pred HHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 003531 280 LVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDL 356 (812)
Q Consensus 280 li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 356 (812)
++..|.+.|+.++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 78888899999999999888764 456788888899999999999999999888753 23344566777788888999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 357 ERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 357 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
+.|.++++.+.+.. +.+..++..+...|.+.|+.++|...|+++... +...+..++..|.+.|++++|..+++++.
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999888765 346778888888999999999999999887543 44567788888999999999999999887
Q ss_pred hCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHH
Q 003531 434 SKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTW 510 (812)
Q Consensus 434 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~ 510 (812)
+.. +.+..++..+..++...|+.+.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++. ..+..+|
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 643 4456678888888889999999999998887764 3456678888888999999999999998876 3457788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR 590 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 590 (812)
..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.. ..|+...+..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHH
Confidence 889999999999999999999988864 44566777888888899999999999988874 35666778888889999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ ++|..+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999999888887 3334 667888888888889999999999999999999888889999999999999 88988888
Q ss_pred HHHHc
Q 003531 669 IMEKK 673 (812)
Q Consensus 669 ~m~~~ 673 (812)
++.+.
T Consensus 828 ~~~~~ 832 (899)
T TIGR02917 828 KALKL 832 (899)
T ss_pred HHHhh
Confidence 88765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=3.3e-34 Score=243.80 Aligned_cols=105 Identities=63% Similarity=1.046 Sum_probs=96.1
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhh--------hhhchhccHHHHH
Q 003531 680 GCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQ--------ENLLSSHSEKLAI 750 (812)
Q Consensus 680 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~--------~~~~~~hse~la~ 750 (812)
||||+++ |.|++||.+||+. ++..++...||.|++.. +|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999977 9999999999998 45566778899999988 888877765 5689999999999
Q ss_pred HHccccCCCCCcEEEEecc-cccCCchhhhhhhhcccCceEEEecCCcccccc
Q 003531 751 AFGLLNSSPGSTIHIRKNL-RVCGDCHNATKYISLVTGREIIVRDMHRFHCFK 802 (812)
Q Consensus 751 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~ 802 (812)
||||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.9e-24 Score=261.93 Aligned_cols=602 Identities=11% Similarity=0.054 Sum_probs=450.6
Q ss_pred cChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCC--CC-hhHH----------------HHHH
Q 003531 51 TSLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPD--KL-DALY----------------HTML 110 (812)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~-~~~~----------------~~li 110 (812)
.+.+.+++.+..++...+ ++.... .+...+.+.|+.++|.+.++...+ |+ ...+ ..+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 378899999998876554 455555 888888999999999999987643 22 2222 2334
Q ss_pred HHHHhcCCchHHHHHHHHhHhCCCCCCcc-hHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 003531 111 KGYAKFASLDDAVSFLIRMRYDDVAPVVY-NYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQI 189 (812)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 189 (812)
+.+...|++++|+..|+++.... +|+.. ............++.++|.+.++.+++.. +.+...+..+...+...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998653 33332 11122222335689999999999999885 55777888999999999999
Q ss_pred hHHHHHhccCCCCCc------chHH-----------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHH
Q 003531 190 EEAYKMFDRMPERDL------VSWN-----------------TIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSIL 246 (812)
Q Consensus 190 ~~A~~~f~~~~~~~~------~~~~-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 246 (812)
++|+..|+++.+... ..|- ..+..+-.....+.|...+.++......|+... ...-
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999998754211 1111 111111122234455555555544332333221 1223
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC--CCc---hhHHHH----------
Q 003531 247 PAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS--RNV---VSWNSM---------- 311 (812)
Q Consensus 247 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l---------- 311 (812)
.++...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999875 34677888999999999999999999998765 322 223222
Q ss_pred --HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCC
Q 003531 312 --IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCK 389 (812)
Q Consensus 312 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 389 (812)
...+.+.|++++|...|++.++.. +.+...+..+-..+...|++++|.+.++.+.+... .+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 345678999999999999999863 23445666777889999999999999999998753 34556667777775 46
Q ss_pred ChHHHHHHHHhcCCCC------------cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhcccc
Q 003531 390 KVDRAADIFSKLQGKT------------LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSV 456 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 456 (812)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998776432 123555677888999999999999999884 455 4456677788999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChH---------HHHHHHHHHHhCCCH
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER----HVT---------TWNVMIDGYGTHGLG 523 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~ 523 (812)
.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988754 334555555666678899999999999988632 111 123456778899999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 003531 524 KAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQ 602 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 602 (812)
++|+++++. .+++...+..+...+.+.|++++|+..|+...+ ..| +...+..++.+|...|++++|.+.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999872 344556777888899999999999999999985 356 68899999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc------chhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 603 KM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG------YHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 603 ~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+. ...| +..++..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88 4555 4567888888899999999999999999998776543 566779999999999999999888864
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.8e-24 Score=257.65 Aligned_cols=585 Identities=12% Similarity=0.051 Sum_probs=434.0
Q ss_pred HHHHHhhcCCChhHHHHhhccC---CCCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchH------------
Q 003531 77 KLVSLFCKYNSLSDAARVFEPI---PDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNY------------ 141 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~------------ 141 (812)
..+..+...++.+.|++.++++ ...|...+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 5566677888999999888864 33467788889999999999999999999998854 554333
Q ss_pred -----HHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHH
Q 003531 142 -----TYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV-VNMYAKCGQIEEAYKMFDRMPE--R-DLVSWNTIVA 212 (812)
Q Consensus 142 -----~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L-i~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 212 (812)
..+.+.+...|++++|.+.++.+.+.. +++......+ .......|+.++|++.|+++.+ | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223345778899999999999998764 3443221111 2222345999999999999875 3 4447888889
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC----------------Ccc---hHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003531 213 GFAQNGFAELALDLVTRMHEEGRRG----------------DFI---TIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI 273 (812)
Q Consensus 213 ~~~~~g~~~~A~~l~~~m~~~g~~p----------------~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 273 (812)
.+...|+.++|+..|+++....... +.. .+...+..+........+...+....+....|.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999987542100 000 011111112222223444555544443333333
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh-hhH------
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN-VTI------ 343 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~------ 343 (812)
.. ...+...+...|++++|...|++..+ .+...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667789999999999998765 36778999999999999999999999999876432211 111
Q ss_pred ------HHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHH
Q 003531 344 ------MEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMIL 414 (812)
Q Consensus 344 ------~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 414 (812)
...-..+...|++++|...++.+++... .+...+..|...|.+.|++++|++.|++..+. +...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1123456788999999999999998853 45667778999999999999999999998754 3446666777
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCC--------CcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKP--------DSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
.|. .++.++|+.+++.+....... ....+..+...+...|+.++|.+.++.+++.. +.+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 467899999987764321100 01234445566778999999999999998875 33567788899999
Q ss_pred HhcCCHHHHHHHHHhcC--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh---------HHHHHHHHHHh
Q 003531 487 AKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI---------TFLCAISACSH 554 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~ 554 (812)
.+.|++++|...|+++. . .+...+..+...+...|+.++|+..++++......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875 2 355566666666788999999999999875433222221 23345677889
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003531 555 SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 555 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
.|+.++|..+++. ..++...+..+.+.+.+.|++++|.+.+++. ...| +...+..++..+...|++++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998761 2336677888999999999999999999998 5566 577999999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
++++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999988753
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4.8e-21 Score=222.73 Aligned_cols=561 Identities=12% Similarity=0.034 Sum_probs=342.0
Q ss_pred hcCCChhHHHHhhccCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHH
Q 003531 83 CKYNSLSDAARVFEPIP---DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159 (812)
Q Consensus 83 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 159 (812)
...|++++|+..|+... +.+..++..|.+.|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+.|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 34588889988888653 235667888888999999999999998888875 45555555555333 78888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH--------HHhcCChhHHHHHhccCCCCC--cchHHHH-HHHHHhCCChHHHHHHHH
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNM--------YAKCGQIEEAYKMFDRMPERD--LVSWNTI-VAGFAQNGFAELALDLVT 228 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~l~~ 228 (812)
+++++.+.. +.+..++..+... |.+.+...+++. .....++ ....... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999888875 4445555555555 777766666666 2222333 3333444 788888999999999999
Q ss_pred HHHHcCCCCCcchHHhHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC-----
Q 003531 229 RMHEEGRRGDFITIVSILPAVAN-VGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS----- 302 (812)
Q Consensus 229 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----- 302 (812)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++.+++.
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 998875332 2224444455655 355 666665332 3346778888899999999999999998888764
Q ss_pred CCchhHH------------------------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh----------
Q 003531 303 RNVVSWN------------------------------SMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT---------- 342 (812)
Q Consensus 303 ~~~~~~~------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---------- 342 (812)
|...+|- .++..+.+.+.++-+.++.. ..|....
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccc
Confidence 2222221 11344455555554443321 1222211
Q ss_pred ------------------------HHHHHHHHhccCChHHHHHHHHHHhhc-C-CCCChhHHHHHHHHHHhCCCh---HH
Q 003531 343 ------------------------IMEALHACADLGDLERGIFVHKLLDQL-K-LGTDVSMTNSLISMYSKCKKV---DR 393 (812)
Q Consensus 343 ------------------------~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~---~~ 393 (812)
...+--.....|+.++|.+++...... + -..+....+-|+..|.+.+.+ .+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 111111123445566666666665542 1 112334445666666666552 22
Q ss_pred HHHH-------------------------HHhcCC---C--CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc
Q 003531 394 AADI-------------------------FSKLQG---K--TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443 (812)
Q Consensus 394 A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 443 (812)
+..+ +..... . +...|..+...+.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 111111 1 33445555555555 6667777766666553 355443
Q ss_pred HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH---HHHHHHHhC
Q 003531 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWN---VMIDGYGTH 520 (812)
Q Consensus 444 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~ 520 (812)
...+..++...|+.++|...+..+... +|+...+..+...+.+.|+.++|.+.|+...+.++..++ .+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 333334445677777777777765443 233333455566667777777777777766633222222 222233344
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 003531 521 GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWD 599 (812)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~ 599 (812)
|++++|+..|++.++ ..|+...+..+..++.+.|++++|+..|++... +.| +...++.+...+...|++++|++
T Consensus 590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777776 456666677777777777777777777777663 355 56667777777777777777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 600 FIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 600 ~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+++. ...| ++..|..+..++...|++++|+..++++++++|++..+....+++.....+++.|.+-+++.-.-
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 77766 4455 45577777777777777777777777777777777777777777777777777776665555443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=3e-20 Score=216.08 Aligned_cols=548 Identities=10% Similarity=-0.022 Sum_probs=383.4
Q ss_pred HHHHHHHHH--HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003531 105 LYHTMLKGY--AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNM 182 (812)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 182 (812)
++--+..+. ...|++++|+..|++..+.. +-+...+..+...+...|+.++|....++.++.. +.|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH
Confidence 344444443 33499999999999998854 2235568888899999999999999999999885 3445555554 22
Q ss_pred HHhcCChhHHHHHhccCCC--CC-cchHHHHHHH--------HHhCCChHHHHHHHHHHHHcCCCCCcchHHhH-HHHHh
Q 003531 183 YAKCGQIEEAYKMFDRMPE--RD-LVSWNTIVAG--------FAQNGFAELALDLVTRMHEEGRRGDFITIVSI-LPAVA 250 (812)
Q Consensus 183 y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~ 250 (812)
+ ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 2 899999999999874 43 3344444443 6666 44555444 4443344555555555 88999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 003531 251 NVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK-CGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQ 329 (812)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 329 (812)
..++++.+..++..+.+.+... ......|..+|.. .++ +++..+++...+.|...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999997443 5556667778888 477 999999876556788999999999999999999999999
Q ss_pred HHHHcCCC-CChhhHHHH------------------------------HHHHhccCChHHHHHHHH--------------
Q 003531 330 KMLDQGVE-PTNVTIMEA------------------------------LHACADLGDLERGIFVHK-------------- 364 (812)
Q Consensus 330 ~m~~~g~~-p~~~t~~~l------------------------------l~a~~~~~~~~~a~~i~~-------------- 364 (812)
++...-.. |+..++.-+ +..+.+.++++.+.++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 98653222 333333222 233334444444443321
Q ss_pred ---------------HHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--Cc----ccHHHHHHHHHHcCC--
Q 003531 365 ---------------LLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK--TL----VSWNAMILGYAQNGR-- 421 (812)
Q Consensus 365 ---------------~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~----~~~~~li~~~~~~g~-- 421 (812)
.+.+.. +-+....--+.-...+.|+.++|..+|+..-.. +. ..-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 000000 001112222222345677788888888776541 11 223356666666655
Q ss_pred -hHHHHHH----------------------HHHHhh-CCCCCC---cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 422 -VNEALNY----------------------FCKMRS-KNIKPD---SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 422 -~~~A~~~----------------------~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
..++..+ +..... .+..|+ ...+..+..++. .+..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--C
Confidence 3333333 111111 112233 333444444444 478888888777766554 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 551 (812)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|.+.|++.++. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 443333445555689999999999998763 55566778888899999999999999999985 45443 33344445
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a 629 (812)
....|++++|...+++..+ +.|+...|..++.++.+.|+.++|...+++. ...| +...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5667999999999999884 5788889999999999999999999999998 6677 466888888899999999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998875
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-20 Score=191.83 Aligned_cols=448 Identities=14% Similarity=0.119 Sum_probs=353.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003531 207 WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK 286 (812)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 286 (812)
...|..-..+.|++++|++.-...-.++ ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555667788888887654433322 1122222222233444445544443333333322 2235677888899999
Q ss_pred CCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHH
Q 003531 287 CGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHA-CADLGDLERGIFV 362 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i 362 (812)
.|++++|...++.+.+ ..+..|.-+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.- ....|.+.+|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998876 3567899999999999999999999998887 46766654433332 3346888899888
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCC
Q 003531 363 HKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKP 439 (812)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 439 (812)
+...++... .-..+|+-|...+-..|++..|...|++...-|+ .+|-.|...|...+.+++|+..|.+... .+|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCC
Confidence 888877642 2356688888889999999999999999876554 5788888999999999999999988776 467
Q ss_pred C-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHHHHHHHH
Q 003531 440 D-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ER-HVTTWNVMID 515 (812)
Q Consensus 440 ~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~ 515 (812)
+ .+.+..+...|...|.++.|...+++.+... +.-...|+.|..++-..|++.+|.+.|.+.. .| ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 6 5667777777889999999999999988754 2235679999999999999999999999887 33 4678899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGR 593 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 593 (812)
.|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..|++.. .|.|+ +..|+.|+..|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 7787 5689999999999999999999999887 58895 7899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
.+.|.+.+.++ .+.|. ....+.|.+.|.-.|+..+|+..++.++++.||.+.+|-.|+-.+.-..+|.+-.+.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence 99999999888 77775 4588999999999999999999999999999999999999998888888888744333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=7.5e-20 Score=187.91 Aligned_cols=418 Identities=14% Similarity=0.158 Sum_probs=334.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCCh
Q 003531 245 ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNP 321 (812)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 321 (812)
+..-.-+.|++++|++--..+-+.. +.+....-.+-..|....+.+....--....+ .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3334455677877776544443322 22222223334556666666654443322222 2346789999999999999
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhCCChHHHHHHHH
Q 003531 322 EEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVS-MTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 322 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
++|+.+++.|++. +|+ ...|..+..++...|+.+.|.+.+...++.+ |+.. +.+-+....-..|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 554 4578889999999999999999999888764 4332 33345556667899999999988
Q ss_pred hcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 003531 400 KLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKN 475 (812)
Q Consensus 400 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 475 (812)
+..+.+ .+.|+.|...+-.+|+..+|++.|++... +.|+ ...|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 766543 37899999999999999999999999987 5676 4567777778888888888888777766543 234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISA 551 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 551 (812)
..++..+.-.|...|.++-|...|++.. +|+ ...|+.|..++-..|+..+|...|.+.+. +.|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 5566667777999999999999999987 454 57999999999999999999999999998 6777 5578899999
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~ 628 (812)
+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|. ...++.++..|...|++..
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999877 46674 678999999999999999999999988 88897 4589999999999999999
Q ss_pred HHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 629 GEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 629 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
|.+.+.+++..+|.-..++..|+.+|-..|+..+|..-++...+...
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999998887543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.4e-17 Score=189.11 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=194.6
Q ss_pred cCChHHHHHHHHHHhhCC-CCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKN-IKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 496 (812)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++.. +.....|..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777888887777654 2333 3345555555667778888888877777653 223556777888888999999999
Q ss_pred HHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 003531 497 ALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDY 572 (812)
Q Consensus 497 ~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 572 (812)
..|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|+..|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9998776 34577899999999999999999999999998 5565 556777888889999999999999998853
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 573 GIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-------T-VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 573 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.| +...++.++.+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|+..++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45 5788999999999999999999999886 444431 1 1222222334469999999999999999999
Q ss_pred CccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 643 EGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+..++.+|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9889999999999999999999999988764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.3e-18 Score=187.48 Aligned_cols=291 Identities=13% Similarity=0.145 Sum_probs=212.7
Q ss_pred HHHhCCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC---cccHHhHHHHHhccccH
Q 003531 384 MYSKCKKVDRAADIFSKLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD---SFTMVSVIPALAELSVI 457 (812)
Q Consensus 384 ~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 457 (812)
.+...|++++|...|+++.+.+ ..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455566666666666665432 23556666666667777777777766665322111 13345556666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC------hHHHHHHHHHHHhCCCHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RH------VTTWNVMIDGYGTHGLGKAAVEL 529 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~ 529 (812)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|++++|++.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666542 34566778888888888888888888888763 21 12456677788889999999999
Q ss_pred HHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 530 FNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV--MDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 530 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
|+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 454 457777888899999999999999998854 343 466888999999999999999999988 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhh--cCCchHHHHHHHHHHHcCCccCCc
Q 003531 606 IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAA--ASMWDKLAKVRTIMEKKGLQKTPG 680 (812)
Q Consensus 606 ~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~ 680 (812)
..|+...+..++..+...|++++|...++++++..|++......+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777778888889999999999999999999999876444333333322 569999999999999999988886
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=8.4e-18 Score=183.06 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=209.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhCC
Q 003531 314 AYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTD---VSMTNSLISMYSKCK 389 (812)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g 389 (812)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556666666666666654 232 23445555555555566666555555554322111 235667778888888
Q ss_pred ChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHH
Q 003531 390 KVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHAL 466 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 466 (812)
++++|..+|+++.+. +..+++.++..+.+.|++++|++.|+.+.+.+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 888888888887653 446778888888888888888888888876432221100
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--
Q 003531 467 VIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-- 541 (812)
Q Consensus 467 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 541 (812)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 248 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL 248 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH
Confidence 011245667778889999999999998763 34567888899999999999999999999984 344
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGAC 620 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~ 620 (812)
..++..+..++...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 456788899999999999999999998854 577677789999999999999999999877 6679999999888876
Q ss_pred Hh---cCCHHHHHHHHHHHhc
Q 003531 621 KI---HKNVELGEKAANRLFE 638 (812)
Q Consensus 621 ~~---~g~~~~a~~~~~~~~~ 638 (812)
.. +|+.+++...++++++
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhccCCccchhHHHHHHHHHH
Confidence 64 5688888888887775
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.1e-15 Score=164.04 Aligned_cols=572 Identities=12% Similarity=0.083 Sum_probs=391.9
Q ss_pred hhHHHHhhccCCC---CChhHHHHHHHHH--HhcCCchHHHHHHHHhHhCC--CCCCcchHHHHHHHhcCcCChHHHHHH
Q 003531 88 LSDAARVFEPIPD---KLDALYHTMLKGY--AKFASLDDAVSFLIRMRYDD--VAPVVYNYTYLLKVCGDVGEIRRGKEI 160 (812)
Q Consensus 88 ~~~A~~~f~~~~~---~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~l 160 (812)
++.|...|..... +|+.. .+..++ ...+++..|+.+|....... .+||.. ..+-.++.+.++.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 5788888876532 23322 233443 34678899999999866532 334442 2223455678888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHH---Hhc---CChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 003531 161 HGQLIVNGFSLDLFAMTGVVNMY---AKC---GQIEEAYKMFDRMP---ERDLVSWNTIVAGFAQNGFAELALDLVTRMH 231 (812)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~Li~~y---~~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 231 (812)
|.+.++.. | ...++++..+ ... ..+..+..++...- ..|++..|.|-.-|.-.|++..++.+...+.
T Consensus 222 ~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 88888764 3 3333333322 122 22344444444432 2577888999999999999999999988887
Q ss_pred HcCCC--CCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC--C-Cch
Q 003531 232 EEGRR--GDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS--R-NVV 306 (812)
Q Consensus 232 ~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~ 306 (812)
..-.. .-...|-.+-+++-..|+++.|...|-...+..-..-+..+-.|..+|.+.|+++.+...|+.+.. | +..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 64311 112347778888889999999999998887765333344556788999999999999999998875 3 345
Q ss_pred hHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH----HHhhcCCCCChhHH
Q 003531 307 SWNSMIAAYVEGG----NPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHK----LLDQLKLGTDVSMT 378 (812)
Q Consensus 307 ~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~ 378 (812)
+...+...|...+ ..++|..++.+..+.- ..|...|..+-..+....-+ .....+. .+...+-.+.+.+.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5556666666664 3456666666655542 33445566555555444333 2244443 34455666888899
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC-------Cc-----c-cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc-H
Q 003531 379 NSLISMYSKCKKVDRAADIFSKLQGK-------TL-----V-SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT-M 444 (812)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 444 (812)
|.+...+...|+++.|...|++.... +. + +-..+...+-..++++.|.+.|..+... .|+-++ |
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y 533 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAY 533 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence 99999999999999999999876533 22 1 1122445556677899999999999875 355332 3
Q ss_pred HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHh
Q 003531 445 VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 445 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~ 519 (812)
.-++......+.+.+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 333322233456777777777776643 4566677777888888888888888666554 3466666666665532
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 520 ------------HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 520 ------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
.+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.++.+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHH
Confidence 246789999999998842 335667778888889999999999999999875 22345678889999
Q ss_pred HhhcCCHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh--------
Q 003531 588 LGRAGRLNEAWDFIQKM--P--IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA-------- 655 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~--~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------- 655 (812)
|..+|++-.|.++|+.. . -..+..+..-|..++...|.+.+|...+..+..+.|.++.....++-+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 99999999999999876 2 23367788899999999999999999999999999999887776665543
Q ss_pred -----------hcCCchHHHHHHHHHHHcCC
Q 003531 656 -----------AASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 656 -----------~~g~~~~a~~~~~~m~~~g~ 675 (812)
..+..++|.++|..|...+-
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33566788888888877543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=2.8e-16 Score=179.58 Aligned_cols=367 Identities=10% Similarity=-0.020 Sum_probs=283.5
Q ss_pred hCCChHHHHHHHhcCCC------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 286 KCGRVETARLVFDGMKS------RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
|..+++.---+|...++ .+..-...++..+.+.|++++|+.+++..+.....+. ..+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 55566666666665554 1333455567788899999999999999988644333 3344445666678999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...++.+.+.. +.+...+..+...+.+.|++++|.+.|++.... +...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 335667888889999999999999999987653 45678889999999999999999999887643
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVM 513 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~l 513 (812)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 443333223345778899999999999887765444445556667788999999999999998773 456788889
Q ss_pred HHHHHhCCCHHH----HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 003531 514 IDGYGTHGLGKA----AVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDL 587 (812)
Q Consensus 514 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 587 (812)
...|.+.|++++ |+..|++.++ ..|+ ...+..+...+...|++++|+..+++..+ ..| +...+..++.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 999999999986 8999999998 5665 55788899999999999999999999885 456 56778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHH
Q 003531 588 LGRAGRLNEAWDFIQKM-PIEPGITVF-GAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~-~~~pd~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 665 (812)
|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...|++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765444 3456678899999999999999999999864 244556666
Q ss_pred HHHHHHHc
Q 003531 666 VRTIMEKK 673 (812)
Q Consensus 666 ~~~~m~~~ 673 (812)
.+....+.
T Consensus 396 ~~~~~~~~ 403 (656)
T PRK15174 396 ALDGQISA 403 (656)
T ss_pred HHHHHHHh
Confidence 65555543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=9.8e-15 Score=158.99 Aligned_cols=541 Identities=15% Similarity=0.079 Sum_probs=376.1
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHhc--CcCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 003531 119 LDDAVSFLIRMRYDDVAPVVYNYTYLLKVCG--DVGEIRRGKEIHGQLIVNG--FSLDLFAMTGVVNMYAKCGQIEEAYK 194 (812)
Q Consensus 119 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~ 194 (812)
.+.|...|....+.. |+.. ...+.++|. ..+++..|..+|..++... ..+|+.+.. -.++.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHH
Confidence 367777777766542 3322 233445543 5678999999999876653 455654432 356678899999999
Q ss_pred HhccCCCCCcchHHHHHHHHH------hCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHh
Q 003531 195 MFDRMPERDLVSWNTIVAGFA------QNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRA 268 (812)
Q Consensus 195 ~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 268 (812)
.|....+-|...-++++.... ....+..++.++...-... .-|....+.|..-+.-.|+...+..+...+++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999888766555555443221 1223455666655544332 235566777888888899999999999888876
Q ss_pred CCCCc--hhHHHHHHHHHHhCCChHHHHHHHhcCCC--CC--chhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh-h
Q 003531 269 GFDSI--VNVSTALVDMYAKCGRVETARLVFDGMKS--RN--VVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN-V 341 (812)
Q Consensus 269 g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 341 (812)
..... ...+--+..+|...|++++|...|.+... +| +..+--+.+.|...|+.+.+...|+..... .||. .
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 53222 23455678899999999999999987765 33 344556788899999999999999999875 4554 4
Q ss_pred hHHHHHHHHhccC----ChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhc--------CCCCcccH
Q 003531 342 TIMEALHACADLG----DLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKL--------QGKTLVSW 409 (812)
Q Consensus 342 t~~~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~~~~ 409 (812)
|...+-..|+..+ ..+.|..+.....+.- ..|...|-.+..+|....- ..+...|... ....+...
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5555555555554 4566666666666554 4466667666666655433 2224444332 22355678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhC---CCCCCc-----ccHH-hHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSK---NIKPDS-----FTMV-SVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMT 480 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 480 (812)
|.+...+...|++++|...|.+.... ...+|. +|.. .+.......++.+.|.+.+..+++... .-+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHH
Confidence 88899999999999999999988664 223343 2222 233344566789999999999988641 1222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHh--
Q 003531 481 ALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISACSH-- 554 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~-- 554 (812)
.|.-|--..+...+|...+.... +.|+..|+-+...|.....+..|.+-|+...+.- ..+|.....+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 23222223367778988888776 4677788888888888888888888777665532 23677777777776643
Q ss_pred ----------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 003531 555 ----------SGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACK 621 (812)
Q Consensus 555 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~ 621 (812)
.+..+.|++.|.+..+ ..| +...-|-++-.++..|++.+|.++|.+. ....+..+|-.+...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 3456788888888774 456 8888899999999999999999999887 22335568999999999
Q ss_pred hcCCHHHHHHHHHHHhcc--CCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 622 IHKNVELGEKAANRLFEL--DPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..|++..|+++|+..++. ..+++.+...|+.++...|+|.+|.+........
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999863 3466788899999999999999999988777654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.3e-15 Score=178.07 Aligned_cols=360 Identities=9% Similarity=0.027 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 003531 277 STALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL 353 (812)
Q Consensus 277 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 353 (812)
+..+...+.+.|++++|..+|++... .+...+..++..+...|++++|+..+++..+. .|+...+..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC
Confidence 44444444455555555555544321 22334444445555555555555555555443 22221144444444455
Q ss_pred CChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcc--------cHHHHHHHH-----HHcC
Q 003531 354 GDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLV--------SWNAMILGY-----AQNG 420 (812)
Q Consensus 354 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~-----~~~g 420 (812)
|+.+.|...++.+.+.... +..++..+...+.+.|..+.|.+.++.... ++. ....++..+ ...+
T Consensus 130 g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 5555555555555554322 333444455566666666667666665554 211 011111111 1112
Q ss_pred Ch---HHHHHHHHHHhhC-CCCCCcc-cHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 421 RV---NEALNYFCKMRSK-NIKPDSF-TMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 421 ~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
++ ++|++.++.+.+. ...|+.. .+... ....+.++...|++++|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDV 256 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHH
Confidence 22 5566666666542 1122211 11000 00001112233555555
Q ss_pred HHHHHhcCCCC---hH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 496 RALFDMMNERH---VT-TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-----DITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 496 ~~~~~~m~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
.+.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|.++++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555554211 10 1111234455555555555555555442 121 1223334444555555555555555
Q ss_pred HHHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003531 567 SLKKDYG----------IEPV---MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 567 ~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
.+..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..+...+...|+.++|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 5543210 0111 123444555666666666666666665 3333 34455666666666666666666
Q ss_pred HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++++++++|++...+..++.++...|+|++|..+++.+.+.
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666665543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=3.3e-15 Score=171.46 Aligned_cols=250 Identities=14% Similarity=0.057 Sum_probs=174.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
.|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555556666666666555542 233 2244444455555566666666665555543 33456777888888
Q ss_pred HhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHH
Q 003531 487 AKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 562 (812)
...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHH
Confidence 899999999999988763 3566788888899999999999999999987 4554 667888888999999999999
Q ss_pred HHHHHHHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 003531 563 HYFTSLKKDYGIEPVM-D-------HYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 563 ~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
..|+...+ +.|+. . .++.....+...|++++|.+++++. .+.|+ ...|..++..+...|++++|+..
T Consensus 488 ~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99998774 33421 1 1222223344579999999999886 66674 45788999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++++++.+..... .....|.+|.++....+++
T Consensus 565 ~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 565 FERAAELARTEGEL--------VQAISYAEATRTQIQVQED 597 (615)
T ss_pred HHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 99999988754331 2333455677666655553
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.1e-15 Score=178.68 Aligned_cols=367 Identities=13% Similarity=0.059 Sum_probs=253.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 003531 276 VSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACA 351 (812)
Q Consensus 276 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 351 (812)
...-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++.++. .|+ ......+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 334455566678888888888887764 33445888888888999999999999988765 344 344556666777
Q ss_pred ccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHH
Q 003531 352 DLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNY 428 (812)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 428 (812)
..|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...|..++|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 8888888888888887773 33444 777777888888888888888877653 334566677777778888888887
Q ss_pred HHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhcCC-
Q 003531 429 FCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV---GTARALFDMMNE- 504 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~---~~A~~~~~~m~~- 504 (812)
++.... .|+.. .-+ ....+. ...+. .+.......+++ ++|.+.++.+.+
T Consensus 173 l~~~~~---~p~~~---~~l-------~~~~~~----~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 173 IDDANL---TPAEK---RDL-------EADAAA----ELVRL----------SFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHhCCC---CHHHH---HHH-------HHHHHH----HHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 776543 33310 000 000000 00000 011111222333 667777776652
Q ss_pred ----CChH-H----HHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCC
Q 003531 505 ----RHVT-T----WNVMIDGYGTHGLGKAAVELFNKMLEGPTK-PNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGI 574 (812)
Q Consensus 505 ----~~~~-~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 574 (812)
|+.. . +...+..+...|++++|+..|+++++.+.+ |+.. -..+..++...|++++|+.+|+.+.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2211 1 111134456779999999999999987532 4322 222577899999999999999998753211
Q ss_pred CC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 575 EP--VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-------------G---ITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 575 ~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------d---~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
.+ .......|..++.+.|++++|.++++++ ...| + ...+..+...+...|+.++|+..+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 1355677788899999999999999988 3333 2 12445666778899999999999999
Q ss_pred HhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 636 LFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+++..|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999888754
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=7.2e-16 Score=176.19 Aligned_cols=327 Identities=10% Similarity=-0.027 Sum_probs=268.7
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHH
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGY 416 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 416 (812)
......++..+.+.|+.+.|..++..+......+... ...++......|++++|...|+++... +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456667888999999999999999999887655444 444556667799999999999998754 456788889999
Q ss_pred HHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 417 AQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
.+.|++++|+..|++.... .|+ ...+..+..++...|+.++|...+..+......+. ..+..+. .+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999874 455 45667778889999999999999998877654333 3333333 47889999999
Q ss_pred HHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHH----HHHHHH
Q 003531 496 RALFDMMNER----HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEE----GIHYFT 566 (812)
Q Consensus 496 ~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 566 (812)
...++.+.+. +...+..+...+...|++++|+..|+++++. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987642 3344555677889999999999999999984 454 5577788899999999986 799999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 567 SLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 567 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
+..+ +.| +...+..++.++.+.|++++|...+++. ...|+ ..++..+..++...|++++|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8874 466 6789999999999999999999999988 55664 6678888899999999999999999999999998
Q ss_pred ccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 644 GGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
+..+..++.++...|++++|...++...+...+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 877777899999999999999999998876443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=6.7e-14 Score=160.20 Aligned_cols=436 Identities=10% Similarity=0.025 Sum_probs=243.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcc-hHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChH
Q 003531 213 GFAQNGFAELALDLVTRMHEEGRRGDFI-TIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVE 291 (812)
Q Consensus 213 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 291 (812)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+ ...+.......++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 456888999999999888774 45442 22266677777788888888777776 111222333333455777778888
Q ss_pred HHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhh
Q 003531 292 TARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQ 368 (812)
Q Consensus 292 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 368 (812)
+|.++|+++.+ .|...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888887765 23455666677777778888888888777654 45544553333333334555457777777777
Q ss_pred cCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhH
Q 003531 369 LKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK-TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSV 447 (812)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 447 (812)
.. +.+...+..++....+.|-...|.++.++-+.- +...+.-+ . .+.|.+. ++.+..|+..-
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~---- 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE---- 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHH----Hhhcccccccc----
Confidence 64 335666666777777777777777766654421 11111100 0 0001111 11000010000
Q ss_pred HHHHhccccHHHHHHHHHHHHH-hCCCCc-hhH-HHHH---HHHHHhcCCHHHHHHHHHhcCCCC----hHHHHHHHHHH
Q 003531 448 IPALAELSVIRYAKWIHALVIR-SCFEKN-VFV-MTAL---IDMYAKCGAVGTARALFDMMNERH----VTTWNVMIDGY 517 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~-~~~-~~~l---i~~y~k~g~~~~A~~~~~~m~~~~----~~~~~~li~~~ 517 (812)
-.+-...+.+..-++.+.. .+-.|. ... ..+. +-++.+.|+..++.+.|+.+..+. ..+-.++.++|
T Consensus 261 ---~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 ---TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0000011222222222222 111111 111 1122 233455666677777776666221 22444566666
Q ss_pred HhCCCHHHHHHHHHHHHhCCC-----CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC----------CCCC---hh
Q 003531 518 GTHGLGKAAVELFNKMLEGPT-----KPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYG----------IEPV---MD 579 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~ 579 (812)
...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 667777777777776655321 11222245566666677777777777776664211 0121 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.+..++..+...|++.+|++.++++ ...| |..++..+...+...|++.+|+..++.+..++|++..+...++.++...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 3444566666677777777777766 3444 5556666777777777777777777777777777777777777777777
Q ss_pred CCchHHHHHHHHHHHc
Q 003531 658 SMWDKLAKVRTIMEKK 673 (812)
Q Consensus 658 g~~~~a~~~~~~m~~~ 673 (812)
|+|++|..+.+...+.
T Consensus 498 ~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 498 QEWHQMELLTDDVISR 513 (822)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 7777777666665554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.1e-13 Score=158.55 Aligned_cols=439 Identities=10% Similarity=0.044 Sum_probs=298.6
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhH---HHHHhccC
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLV---SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSI---LPAVANVG 253 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~ 253 (812)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 33467889999999999998863333 24488888999999999999999987 3433333333 44677889
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHh--CCChhHHHHHHHHH
Q 003531 254 SLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVE--GGNPEEAMRIFQKM 331 (812)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m 331 (812)
+++.|.++++.+++.... +..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999988643 366667889999999999999999999987444333234445444 56666699999999
Q ss_pred HHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHH
Q 003531 332 LDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWN 410 (812)
Q Consensus 332 ~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 410 (812)
.+. .|+ ...+.....+..+.|-...|.++...-. +..+-.-.... +.+.|.+..+.-..++. +
T Consensus 196 l~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~-~-- 259 (822)
T PRK14574 196 VRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTR-S-- 259 (822)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccc-c--
Confidence 987 454 5566778888889998888887665522 21111111100 01111111111100000 0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhC-CCCCCc-ccH----HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003531 411 AMILGYAQNGRVNEALNYFCKMRSK-NIKPDS-FTM----VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALID 484 (812)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 484 (812)
.-. +---.+.|+.-++.+... +-.|.. .-| .--+-++...++..++...++.+...+.+....+--++.+
T Consensus 260 -~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 260 -ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred -chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 000 000123344444444431 111221 111 1223455666677777777777776665555556777788
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------CC--Ch
Q 003531 485 MYAKCGAVGTARALFDMMNER---------HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPT-----------KP--ND 542 (812)
Q Consensus 485 ~y~k~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~ 542 (812)
+|...+++++|..+|..+... +......|.-+|...+++++|..+++++.+.-. .| |-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 888888888888888876421 222346677888888888888888888877311 12 22
Q ss_pred h-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003531 543 I-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLG 618 (812)
Q Consensus 543 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~ 618 (812)
. .+..++..+.-.|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.+ .+.|+ ..+...++.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 344566778899999999999999974 466 8999999999999999999999999877 56775 456677777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 619 ACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
+....|++++|..+.+.+++..|+++.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888899999999999999999998754
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.9e-13 Score=133.36 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=216.7
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhc--CcCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 003531 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCG--DVGEIRRG-KEIHGQLIVNGFSLDLFAMTGV 179 (812)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~l~~~~~~~g~~~~~~~~~~L 179 (812)
+.+=|.|+. +...|.++++.-+|++|+..|+..+...-..|++..+ ...++.-+ ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344555554 4567899999999999999998888777666665433 33333322 34455555555 2333333
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
|.|++.+ -+|+..| +...++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+-+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3465544 4444444 55678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHH----hcCC----CCCchhHHHHHHHHHhCCChhH-HHHHHHH
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVF----DGMK----SRNVVSWNSMIAAYVEGGNPEE-AMRIFQK 330 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 330 (812)
++...|+...+.||..++|+++....+.|+++.|++.+ .+|+ +|...+|..+|..+++.+++.+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999988876643 2222 2455555555555555444422 2233333
Q ss_pred HHHc----CCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003531 331 MLDQ----GVEP----TNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQ 402 (812)
Q Consensus 331 m~~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 402 (812)
++.. .++| |..-|.+.+..|.+..+.+.|.+++..+.... . |-..|.. +
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~---- 395 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q---- 395 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H----
Confidence 3221 1111 12234444455555555555554444332110 0 0000000 0
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC
Q 003531 403 GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE 473 (812)
Q Consensus 403 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 473 (812)
....-|.-+....++....+.-+..|+.|+-.-+-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0112244566777888888889999999998888899999999999988888888888888887776643
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.1e-11 Score=134.76 Aligned_cols=612 Identities=13% Similarity=0.132 Sum_probs=404.9
Q ss_pred hhcChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhc---cCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 003531 49 VCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFE---PIPDKLDALYHTMLKGYAKFASLDDAVSF 125 (812)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 125 (812)
+-++.++|.+++.++++..+. ....+..|...|-..|+.+.+...+- .+.+.|..-|-.+-.-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 446899999999999998765 33333389999999999999987764 44556778899999999999999999999
Q ss_pred HHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCChhHHHHHhccCCC
Q 003531 126 LIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV----VNMYAKCGQIEEAYKMFDRMPE 201 (812)
Q Consensus 126 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L----i~~y~~~g~~~~A~~~f~~~~~ 201 (812)
|.+.++.. +++...+--=...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998864 334333334456677899999999999999887643343333334 4445566777889888887764
Q ss_pred -----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----------------------cchHH----hHHHHHh
Q 003531 202 -----RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGD----------------------FITIV----SILPAVA 250 (812)
Q Consensus 202 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~~----~ll~a~~ 250 (812)
-+...+|.++..|.+...++.|......+......+| ...|. .+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2344789999999999999999999988877222222 11111 2223345
Q ss_pred ccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChHHHHHHHhcCCC----CCchhHHHHHHHHHhCCChhHH
Q 003531 251 NVGSLRIGKAVHGYAMRAGF--DSIVNVSTALVDMYAKCGRVETARLVFDGMKS----RNVVSWNSMIAAYVEGGNPEEA 324 (812)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A 324 (812)
+....+....+.....+... ..++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55666666777777777764 44567888999999999999999999998876 4677899999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHh--------hcCCCCChhHHHHHHHHHHhCCChHHHH
Q 003531 325 MRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLLD--------QLKLGTDVSMTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 325 ~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 395 (812)
.+.|.+.+.. .|+.. .-.++-..+.+.|+.++|.+++..+. ..+..|+..+..-..+.|.+.|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999875 45543 34455556778899999999988854 2234566666667778888888877644
Q ss_pred HHHHhcCCC--------------------------CcccHHHHHHHHHHcCChHHHHHH------HHHHhhCCCCCCc--
Q 003531 396 DIFSKLQGK--------------------------TLVSWNAMILGYAQNGRVNEALNY------FCKMRSKNIKPDS-- 441 (812)
Q Consensus 396 ~~f~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~-- 441 (812)
.+-..|..+ +......++.+-.+.++.....+- +.--...|+.-+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 433332210 111122233333333332211111 1111112222221
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C---hH
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIRSCF--EKNV---FVMTALIDMYAKCGAVGTARALFDMMNER-----H---VT 508 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~---~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----~---~~ 508 (812)
.-+.-++.++++.+..++|..+...+..... .++. ..-...+.+....+++..|...++.|... + ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1344556677888888888888777765421 1111 23344555666778888888888877743 3 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMV 585 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 585 (812)
.||...+...+.|+-.--.+++..+.. ..|+. ........-....+.+..|++.+-..-. ..|+ +-+--||+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHH
Confidence 788777777776665555555555444 23333 2222222333556778888887665553 4565 33333333
Q ss_pred HHHh----------hcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-------
Q 003531 586 DLLG----------RAGRLNEAWDFIQKM-PI-EP--GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG------- 644 (812)
Q Consensus 586 ~~~~----------~~g~~~eA~~~~~~~-~~-~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------- 644 (812)
-++. |.-.+-.++.++++. .+ .+ ...+...++.+|.+.|=+-.|+..|++++++.|.+.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 3332 112234455565444 11 12 345778899999999999999999999999976432
Q ss_pred -----cchhhHhhhhhhcCCchHHHHHHHH
Q 003531 645 -----GYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 645 -----~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
.+-..|.-+|...|+..-|.++.+.
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2445788899999999999888653
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=7.5e-11 Score=123.35 Aligned_cols=483 Identities=15% Similarity=0.095 Sum_probs=308.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHH
Q 003531 151 VGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLV 227 (812)
Q Consensus 151 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 227 (812)
..+.+.|+-++.+..+.- +.+...|. +|++..-++.|.++++...+ .+...|-+-...=-.+|+.+....+.
T Consensus 389 lE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 334444555555555542 33333333 33444455566666555443 34455655444445566665555554
Q ss_pred HH----HHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003531 228 TR----MHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI--VNVSTALVDMYAKCGRVETARLVFDGMK 301 (812)
Q Consensus 228 ~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~ 301 (812)
.+ +...|+..+...|..=..+|-..|..-....+...++..|++.. ..+|+.-.+.+.+.+.++-|+.+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 43 33456666666666666666666666666666666655554332 2345555555555555555555555444
Q ss_pred C---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHH
Q 003531 302 S---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMT 378 (812)
Q Consensus 302 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 378 (812)
+ .+...|...+..--..|..++-..+|++.... - +.....+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-----------------------------------~-pkae~lw 587 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-----------------------------------C-PKAEILW 587 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------------------C-CcchhHH
Confidence 3 23444554444444445555555555555543 2 1122233
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccc
Q 003531 379 NSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELS 455 (812)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 455 (812)
-....-+-..|++..|+.+++..-+. +...|-+-+.....+.++++|..+|.+.... .|+.-.|..-+..---++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 33334444556666666655554432 2344555566666666666666666666553 344444444444444556
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003531 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-VTTWNVMIDGYGTHGLGKAAVELFNK 532 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (812)
..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+ |+ +..|-.|...--+.|...+|..++++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 666677666666554 233345677788888888999999998887663 44 45788888888888899999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003531 533 MLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV 612 (812)
Q Consensus 533 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~ 612 (812)
....+ +-|...|...+..-.+.|+.++|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++. +-|+.+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchh
Confidence 88753 345778889999999999999999988888765 4457778888888888888888888888877 346666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEE
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLV 684 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 684 (812)
.-+....+.....++.|...|+++++.+|++..++..+-..+...|.-++-.++++...... +.-|-.|.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 66777778888899999999999999999999999999999999999998888888766542 22345554
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=136.49 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=166.7
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 003531 101 KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVV 180 (812)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 180 (812)
++..+|..||.|+++-...+.|.++|.+......+.+..+||.+|.+-. +..++++..+|+.....||.+++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4456899999999999999999999999998888999999999998764 344589999999999999999999999
Q ss_pred HHHHhcCChhHHHHHhc----cCC----CCCcchHHHHHHHHHhCCChHH-HHHHHHHHHH----cCCCC----CcchHH
Q 003531 181 NMYAKCGQIEEAYKMFD----RMP----ERDLVSWNTIVAGFAQNGFAEL-ALDLVTRMHE----EGRRG----DFITIV 243 (812)
Q Consensus 181 ~~y~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~ 243 (812)
++.++.|+++.|++.+- +|. +|...+|..+|..+.+.+++.+ |..++.+... ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999988876443 333 3666677777777777666533 3333333332 22333 334466
Q ss_pred hHHHHHhccCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCC
Q 003531 244 SILPAVANVGSLRIGKAVHGYAMRAG----FDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGG 319 (812)
Q Consensus 244 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 319 (812)
..+..|.+..+.+.|.++++...... +.++. ....-|..+....++..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 66677777777777777766543211 11110 01122334445555556
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 003531 320 NPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383 (812)
Q Consensus 320 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 383 (812)
..+.-+..|+.|+-.-.-|+..+...+++|....+.++-..+++..++..|.........-++.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6666666666666555566666666666666666666666666666666654443333333333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.9e-11 Score=132.93 Aligned_cols=518 Identities=12% Similarity=0.108 Sum_probs=309.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHH
Q 003531 151 VGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP---ERDLVSWNTIVAGFAQNGFAELALDLV 227 (812)
Q Consensus 151 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 227 (812)
.|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--.. ..|..-|-.+-.-..+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377777777777777665 4556666777777777777776665443222 244556666666666777777777777
Q ss_pred HHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhCCChHHHHHHHhcCCC-
Q 003531 228 TRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA----LVDMYAKCGRVETARLVFDGMKS- 302 (812)
Q Consensus 228 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~m~~- 302 (812)
.+..+.. +++...+---...|-+.|+...|..-+..+.+...+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7666642 22322333334455666777777766666666544333322222 33445556666777777766554
Q ss_pred ----CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh----------------------hhH----HHHHHHHhc
Q 003531 303 ----RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN----------------------VTI----MEALHACAD 352 (812)
Q Consensus 303 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~----~~ll~a~~~ 352 (812)
-+...+|.++..|.+...++.|......+......+|. ..| .-+.-+..+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445778888888888888888888777662212211 111 122233445
Q ss_pred cCChHHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcccHHHHHHHHHHcCChHHHH
Q 003531 353 LGDLERGIFVHKLLDQLK--LGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK----TLVSWNAMILGYAQNGRVNEAL 426 (812)
Q Consensus 353 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 426 (812)
....+....+.....+.. +..+...+.-+.++|...|++.+|.++|..+... +...|--+...|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555566666666666666 4455677888888899999999999999888753 5567888888999999999999
Q ss_pred HHHHHHhhCCCCCCc-ccHHhHHHHHhccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 427 NYFCKMRSKNIKPDS-FTMVSVIPALAELSVIRYAKWIHALVI--------RSCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 427 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
+.|...+.. .|+. ..-.+|-..+.+.|+.++|.+.+..+. ..+..|+..+.--..++|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999888773 4553 233344555677888888888887743 33455666666777788888888777444
Q ss_pred HHHhcCC---------C-----------------ChHHHHHHHHHHHhCCCHHHHH------HHHHHHHhCCCCCCh--h
Q 003531 498 LFDMMNE---------R-----------------HVTTWNVMIDGYGTHGLGKAAV------ELFNKMLEGPTKPND--I 543 (812)
Q Consensus 498 ~~~~m~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p~~--~ 543 (812)
+-..|.. | +..+--.++.+-.+.++..... ..+.--...|+.-+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 3333321 0 0111112222222222211110 011111112222222 1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh----HHHHHHHHHhhcCCHHHHHHHHHhC--C--C--CC-CHHH
Q 003531 544 TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD----HYGAMVDLLGRAGRLNEAWDFIQKM--P--I--EP-GITV 612 (812)
Q Consensus 544 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~eA~~~~~~~--~--~--~p-d~~~ 612 (812)
.|.-++.+..+.+.+++|..+...+...+-+.-+.. .-.+++.+-...+++.+|.+.++.| . + .| -...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345566677778888888887777765543333332 2334555556777888888877777 1 1 23 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-ccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDPDE-GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
|+...+...++++-.-=.+....+....|++ +......|......|.|..|.+.+...-.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 6666666666666555555666666666666 44455566667777788888776655544
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=8.2e-13 Score=131.67 Aligned_cols=271 Identities=12% Similarity=0.062 Sum_probs=199.1
Q ss_pred HHHhCCChHHHHHHHHhcCCCCcccHHH-----HHHHHHH-cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH
Q 003531 384 MYSKCKKVDRAADIFSKLQGKTLVSWNA-----MILGYAQ-NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI 457 (812)
Q Consensus 384 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 457 (812)
-|.+.|+++.|.++++-...+|..+-.+ -.--|.+ ..++.+|.++-+...... +-|....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3667788888877777766655432221 1112233 235666666555443321 11111111111223346788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
++|.+.+.+.+...-.-....||. .-.+-+.|++++|++.|-++. ..++...-.+.+.|....++.+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 888888888876554333344442 334677899999999998765 5677778888899999999999999998887
Q ss_pred hCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 535 EGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 535 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
. +.| |+....-|...|-+.|+-.+|.+.+-.- |..-| +.++...|..-|....-.++|..+|+++ -++|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7 455 5677888999999999999999887653 45556 8999999999999999999999999998 5799999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCch
Q 003531 612 VFGAMLGACK-IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 612 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 661 (812)
-|..|+..|. +.||+..|...++.....-|.|...+-.|..++...|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999998875 6799999999999999999999999999999998888644
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=4.6e-12 Score=136.73 Aligned_cols=524 Identities=11% Similarity=0.062 Sum_probs=304.9
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 003531 124 SFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 203 (812)
.++..|...|+.|+.+||..+|..||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999888 9999988888888899999999888888877665 677
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHH-HH-------HcCCCCCcchHHhHHHHHhccC-C------hHHHHHHHHHHHHh
Q 003531 204 LVSWNTIVAGFAQNGFAELALDLVTR-MH-------EEGRRGDFITIVSILPAVANVG-S------LRIGKAVHGYAMRA 268 (812)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~ 268 (812)
..+|+.|..+|.+.|+... ++..++ |. ..|+.--..-|...+.+|...- + ...-+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998755 222222 22 1232222222222222221111 0 11122333334443
Q ss_pred CC--CCchhHHHH--HHHHHHh-CCChHHHHHHHhcCCC-CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh
Q 003531 269 GF--DSIVNVSTA--LVDMYAK-CGRVETARLVFDGMKS-RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342 (812)
Q Consensus 269 g~--~~~~~~~~~--li~~y~~-~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 342 (812)
+. +........ .+.-... ...+++-..+-....+ ++..++.+.+..-..+|+.+.|..++.+|.+.|++.+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 31 111100000 1111111 1223333333333333 8899999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCh
Q 003531 343 IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRV 422 (812)
Q Consensus 343 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 422 (812)
|..+|-+ .++......+..-|...|+.|+..++.-.+-...+.|....+.+..+.-..-....+..+..+...+.+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8888876 8888889999999999999999999987777776666533332221110000111222333321111111
Q ss_pred H-----HHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHH
Q 003531 423 N-----EALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE---KNVFVMTALIDMYAKCGAVGT 494 (812)
Q Consensus 423 ~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~li~~y~k~g~~~~ 494 (812)
+ -....+.+..-.|+.-....| ++..-....|.-+...++.+.+...-.. .++..+.. .
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~------------~ 385 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA------------L 385 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH------------H
Confidence 1 111222222222332222222 2222223345555566655555332111 12222222 2
Q ss_pred HHHHHHhcCCCChH-HHHHHHHHHHh---CC------------CHHHHHHHHHHHHh----CCCCC-------ChhHHHH
Q 003531 495 ARALFDMMNERHVT-TWNVMIDGYGT---HG------------LGKAAVELFNKMLE----GPTKP-------NDITFLC 547 (812)
Q Consensus 495 A~~~~~~m~~~~~~-~~~~li~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t~~~ 547 (812)
+..+|.+...+... .++ .-.+... .. +...+++-+..+.. .-..| -...-..
T Consensus 386 lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 34444444433221 111 1111111 11 11111111111100 00111 0112345
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP-----IEPGITVFGAMLGACKI 622 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~pd~~~~~~ll~~~~~ 622 (812)
++.+|++.-+..+++..-+..... .- ...|..||+.+.+..++++|..+.++.. +.-|..-+..+.+...+
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~--lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL--LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 566666666666666544333321 11 2679999999999999999999998883 22344566777888889
Q ss_pred cCCHHHHHHHHHHHhc---cCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCcc
Q 003531 623 HKNVELGEKAANRLFE---LDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQK 677 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 677 (812)
++....+..+.++..+ ..|.-......+.|--+..|+.+...+.++.+...|+..
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9989999988887765 334445566677788888999999999999998888754
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=8e-10 Score=115.86 Aligned_cols=418 Identities=12% Similarity=0.082 Sum_probs=324.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChh
Q 003531 246 LPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPE 322 (812)
Q Consensus 246 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 322 (812)
-++.....+.+.|+-++..+++.- +.+...| -+|.+..-++.|.+++.+..+ .+...|.+-...--.+|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 355556666677888888877753 3333333 345566677888888877665 46778877777777888888
Q ss_pred HHHHHHHHH----HHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhCCChHHHHH
Q 003531 323 EAMRIFQKM----LDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTD--VSMTNSLISMYSKCKKVDRAAD 396 (812)
Q Consensus 323 ~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~ 396 (812)
...+++.+- ...|+..+...|..=..+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888877654 4568888888888888899999999999999999988887543 4567777888999999999999
Q ss_pred HHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC
Q 003531 397 IFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE 473 (812)
Q Consensus 397 ~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 473 (812)
+|....+- +...|...+..--..|..++-..+|++.... ++-....+.......-..|++..|+.++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 99877653 4467887777777788899999999998875 2333445555555666779999999999998887644
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAIS 550 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 550 (812)
+..+|-+-+..-....+++.|..+|.+.. .+....|.--+...--.+..++|++++++.++ .-|+ .-.|..+..
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhH
Confidence 77888888999999999999999998877 57777887777777778899999999999988 5677 457888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMP-IEP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
.+.+.++++.|...|..=.+ .-| .+..|-.|.++=-+.|++-.|..++++.. -.| |...|-..+..-.++|+.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 88999999999988876543 234 56778888888889999999999999883 244 6779999999999999999
Q ss_pred HHHHHHHHHhccCCCC------------------------------ccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 628 LGEKAANRLFELDPDE------------------------------GGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
+|..+..++++--|++ +-....++.+++...+++.|++.|.+..+.+.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999988888755543 33555678889999999999999998877543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=6.2e-15 Score=151.89 Aligned_cols=253 Identities=18% Similarity=0.127 Sum_probs=113.8
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHH-HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIP-ALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG 493 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 493 (812)
.+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+...+.. ++..+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 34444555555555543332221233333333222 233345555555555555544322 44456666666 6788899
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 494 TARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 494 ~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
+|.++++..- .++...|..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|+..+++..+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988887664 3566778888889999999999999999987633 344666788888889999999999999999985
Q ss_pred hcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch
Q 003531 571 DYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 571 ~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 647 (812)
. .| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+.+|+|+...
T Consensus 175 ~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 L---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp H----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred c---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 4 67 5888999999999999999988888776 1234677899999999999999999999999999999999999
Q ss_pred hhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 648 VLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 648 ~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
..+++++...|+.++|.+++++..+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999887654
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=4.6e-11 Score=129.16 Aligned_cols=590 Identities=12% Similarity=0.081 Sum_probs=317.1
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCC
Q 003531 59 ILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDK----LDALYHTMLKGYAKFASLDDAVSFLIRMRYDDV 134 (812)
Q Consensus 59 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 134 (812)
.+..+...|+.|+.+.+.+||.-||..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445566788865544458888888888888887 77766432 2345666666666666665543
Q ss_pred CCCcchHHHHHHHhcCcCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhcCChh
Q 003531 135 APVVYNYTYLLKVCGDVGEIRR---GKEIHGQLI----VNGF-----------------SLDLFAMTGVVNMYAKCGQIE 190 (812)
Q Consensus 135 ~p~~~t~~~ll~~~~~~~~~~~---a~~l~~~~~----~~g~-----------------~~~~~~~~~Li~~y~~~g~~~ 190 (812)
.|.+.||..|+.+|...||+.. .++.+..+. ..|+ -||.. .++....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 4666677777777777666543 222111111 1111 11111 1122222223334
Q ss_pred HHHHHhccCC----------------------------------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003531 191 EAYKMFDRMP----------------------------------ERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRR 236 (812)
Q Consensus 191 ~A~~~f~~~~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 236 (812)
.+.+++..+| .++..+|.+++..-..+|+.+.|..++.+|.+.|+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 4444333332 156777888888888888888888888888888888
Q ss_pred CCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHH
Q 003531 237 GDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYV 316 (812)
Q Consensus 237 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 316 (812)
.+..-|-.+|-+ .++...+..+..-|...|+.|+..|+...+-...+.|....+....+.-.--....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 887777776655 67777888888888888888888888777666666554332222111100001112222222211
Q ss_pred hCCCh-----hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhC
Q 003531 317 EGGNP-----EEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKL---GTDVSMTNSLISMYSKC 388 (812)
Q Consensus 317 ~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~~~ 388 (812)
.+.+. .-....+.+..-.|+......|..... ....|.-+...++-..+..-.. ..++..+..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 11111 111112222222233322222222211 1224444455555444432221 11222233333333221
Q ss_pred C----------------------ChHHHHHHHHhcCC----------------CCcccH-----------HHHHHHHHHc
Q 003531 389 K----------------------KVDRAADIFSKLQG----------------KTLVSW-----------NAMILGYAQN 419 (812)
Q Consensus 389 g----------------------~~~~A~~~f~~~~~----------------~~~~~~-----------~~li~~~~~~ 419 (812)
- ......++...... +..+.| +.++..++..
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1 11111111111110 111122 3344445554
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR--SCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
-+..+++..-+..... .-| ..|..++.-|.....++.|..+.+++.. ..+..|...+..+.+...+.+...++..
T Consensus 473 ~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 4555555433332221 111 4578888888888899999988887754 3445677778889999999999999999
Q ss_pred HHHhcCC-----CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------------------------------C
Q 003531 498 LFDMMNE-----RH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP------------------------------N 541 (812)
Q Consensus 498 ~~~~m~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------------------------~ 541 (812)
++.++.+ ++ ..+.--+.++-+..|+.+.-.++++-+...|+.- .
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 9988873 22 2244445566667777777766666655444322 1
Q ss_pred hhHHHHHHHHH---------------------HhcCcHHHHHHHHHHHHHhcCC---------------CC---------
Q 003531 542 DITFLCAISAC---------------------SHSGLVEEGIHYFTSLKKDYGI---------------EP--------- 576 (812)
Q Consensus 542 ~~t~~~ll~a~---------------------~~~g~~~~a~~~~~~m~~~~~~---------------~p--------- 576 (812)
+.....+.+.. .+.|++.++..+.+ ..|+ .|
T Consensus 630 P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~ 705 (1088)
T KOG4318|consen 630 PKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTH 705 (1088)
T ss_pred hHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHh
Confidence 11111222211 12222222222111 0011 11
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCcc---chhhH
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHK---NVELGEKAANRLFELDPDEGG---YHVLL 650 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~---~~~~l 650 (812)
+.....-|+..|.+.|+++.|..++.+++..|.......|...++.+. ++-++...-+++-++.|..+. .|.-.
T Consensus 706 ~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~ 785 (1088)
T KOG4318|consen 706 ELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGY 785 (1088)
T ss_pred HhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhh
Confidence 011222366788899999999999999988888888888888877665 455666666777776654433 33333
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcC
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+-+.......+-|.+.+.+..+..
T Consensus 786 a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 786 AFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHcc
Confidence 444444445557788888888763
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.3e-13 Score=139.62 Aligned_cols=275 Identities=15% Similarity=0.042 Sum_probs=218.7
Q ss_pred ChHHHHHHHHhcCCC--Ccc-cHHHHHHHHHHcCChHHHHHHHHHHhhCC-CC-CCcccHHhHHHHHhccccHHHHHHHH
Q 003531 390 KVDRAADIFSKLQGK--TLV-SWNAMILGYAQNGRVNEALNYFCKMRSKN-IK-PDSFTMVSVIPALAELSVIRYAKWIH 464 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~i~ 464 (812)
+..+|...|..++.. |.. ...-+..+|...+++++|.++|+...+.. .. -+...|.++|.-+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457888888886543 332 33456778999999999999999988742 11 2455677766544321 111222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 003531 465 A-LVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP 540 (812)
Q Consensus 465 ~-~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (812)
. .+++. -+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+++|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 22222 2557889999999999999999999999998853 457888888888899999999999999987 667
Q ss_pred Chh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003531 541 NDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAM 616 (812)
Q Consensus 541 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~l 616 (812)
... .|..+...|.++++++.|+-.|++.. .+.| +.....+++..+.+.|+.|+|+++++++ .++| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 644 78889999999999999999999887 6888 7888889999999999999999999998 5555 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+..+...+++++|+..+|++.++-|+++..|.+++.+|-+.|+.+.|..-|..|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677788999999999999999999999999999999999999999999888887653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.4e-11 Score=119.86 Aligned_cols=358 Identities=12% Similarity=0.115 Sum_probs=220.3
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhH--HHHHH
Q 003531 271 DSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTI--MEALH 348 (812)
Q Consensus 271 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~ 348 (812)
..|.+..-..--.+-+.|....|+..|......-+..|.+.+...--.-+.+. ...... |...|...+ -.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHHHH
Confidence 33433333333344566777788888777665444445444333222222221 111111 112111111 12334
Q ss_pred HHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003531 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNY 428 (812)
Q Consensus 349 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 428 (812)
++......+++.+-.......|++.+...-+-...++-...++|+|+.+|+++.+.|+.-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------------------- 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence 5555556666766677777777666655555555555555666666666666655433211
Q ss_pred HHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C
Q 003531 429 FCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---R 505 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~ 505 (812)
-|..||+.+|-+-.....+..--+....+- .+ -+.+...+.+-|+-.++.++|...|++..+ .
T Consensus 297 ----------~dmdlySN~LYv~~~~skLs~LA~~v~~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~ 362 (559)
T KOG1155|consen 297 ----------DDMDLYSNVLYVKNDKSKLSYLAQNVSNID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK 362 (559)
T ss_pred ----------hhHHHHhHHHHHHhhhHHHHHHHHHHHHhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc
Confidence 022233333322111111111001111111 11 123344556667777888888888887764 3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
....|+.|..-|....+...|++-+++.++ +.| |-..|..+..+|.-.+...-|+-+|++.. .+.| |...|.+
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~a 437 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVA 437 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHH
Confidence 456888888889888888999999999888 555 56688899999999999999999888876 4677 7888999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCccchhhHhhhh
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-------LDPDEGGYHVLLANIY 654 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~ 654 (812)
|++.|.+.++++||.+-|++. .-+.+...+..|...+.+.++.++|..++++-++ .+|+-..+-..|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 999999999999999998887 2233457888888889999999999999988876 3343344555688888
Q ss_pred hhcCCchHHHHHHHHHH
Q 003531 655 AAASMWDKLAKVRTIME 671 (812)
Q Consensus 655 ~~~g~~~~a~~~~~~m~ 671 (812)
.+.++|++|..+-....
T Consensus 518 ~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVL 534 (559)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 88899999877665443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-10 Score=116.72 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=202.4
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCC-
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE--KNVFVMTALIDMYAKCGA- 491 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~k~g~- 491 (812)
++-...+.+++++-.......|+.-+...-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 34444455666666666666555444433333334445566777777777777776321 2555666554 333322
Q ss_pred -HH-HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 492 -VG-TARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 492 -~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+. -|..++ .+.+--+.|.-.+.+-|.-.++.++|...|++.++ +.|. ...|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 122222 22223344555566777888999999999999999 5666 557888889999999999999999998
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
+ .+.| |-..|-.|+.+|.-.+...-|+-+|+++ ..+| |...|.+|+..|.+.++.++|++.|.+++.....+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8 5778 8889999999999999999999999999 6778 7889999999999999999999999999999887889
Q ss_pred chhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 646 YHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
+++.|+++|-+.++.++|.+.+++-.+.-. ..+ ...|+..++...|.+-+.+|+.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~----------~eg---------~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSE----------LEG---------EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hhc---------ccchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987766310 000 1145566666667666666553
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.5e-12 Score=134.54 Aligned_cols=265 Identities=16% Similarity=0.159 Sum_probs=207.9
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF--EKNVFVMTALIDMYAKCGAVGT-AR 496 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~-A~ 496 (812)
-+..+|+..|...... +.-.......+..+|...++.++++.+|+.+.+... -.+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568899999985443 333345666778899999999999999999987531 2366677776633332211111 22
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 497 ALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 497 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
.+.+. ....+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 22222 244578999999999999999999999999999 778 57899988888899999999999998765 3
Q ss_pred CChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 576 PVMDHYGA---MVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 576 p~~~~~~~---li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
.|+.+|++ |+-.|.|.++++.|+-.|+++ .+.| +.++.-.++..+.+.|+.|+|+.++++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 45556665 567788999999999999998 7888 566777778889999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
+.++...+++++|.+.+++.++. -|+-..++..+.++.++|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHcc
Confidence 99999999999999999999875 24555566666666666654
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.3e-09 Score=108.44 Aligned_cols=477 Identities=13% Similarity=0.124 Sum_probs=294.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcc-hHHHHHHHHHhCCChHHHHHHHH
Q 003531 152 GEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE--RDLV-SWNTIVAGFAQNGFAELALDLVT 228 (812)
Q Consensus 152 ~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~ 228 (812)
+++..|+.++++.+... ..+...|-..+.+=.++..+..|+.+|+.... |-+. .|---+..=-..|
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg---------- 155 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG---------- 155 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----------
Confidence 34455555666655544 44555566666666666666666666655432 1111 2222222222233
Q ss_pred HHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC--CCCch
Q 003531 229 RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK--SRNVV 306 (812)
Q Consensus 229 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~ 306 (812)
++..|+++|..-.+ ..|+...|++.|+.=.+...++.|+.+++... .|++.
T Consensus 156 -------------------------Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 156 -------------------------NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred -------------------------ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 44444444444332 24555666666666666666666666666543 36666
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 003531 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV----TIMEALHACADLGDLERGIFVHKLLDQLKLGT-DVSMTNSL 381 (812)
Q Consensus 307 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~L 381 (812)
+|--....=.++|+...|..+|....+. -.|.. .|++...-=.+...++.|.-|++..+..-... ....|..+
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 6666666556666666666666655543 11122 22222222234456677777777776653221 13444445
Q ss_pred HHHHHhCCChHHHHHH--------HHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCc-------cc
Q 003531 382 ISMYSKCKKVDRAADI--------FSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDS-------FT 443 (812)
Q Consensus 382 i~~y~~~g~~~~A~~~--------f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 443 (812)
...--+.|+.....+. ++.+...|+ .+|--.+..--..|+.+...++|++.+.. ++|-. ..
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 4444455554333322 233333443 57777777777889999999999998875 55521 11
Q ss_pred HHhHHHHH---hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCChHHHHHHH
Q 003531 444 MVSVIPAL---AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA----KCGAVGTARALFDMMN--ERHVTTWNVMI 514 (812)
Q Consensus 444 ~~~ll~a~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~--~~~~~~~~~li 514 (812)
|.-+=-+| ....+++.++++++..++ -++....++.-+--||+ ++.++..|.+++.... .|...++...|
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 21111122 346788899999988887 34445566666655555 6789999999998776 57778888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
..-.+.+.++....++++.++ ..| |..+|......-...|+.+.|..+|+-.+....++--...|.+.||-=...|.
T Consensus 445 elElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888899999999999999999 455 57788888877788999999999999888653333334567777887789999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----cCCCCc--cchhhH
Q 003531 594 LNEAWDFIQKM-PIEPGITVFGAMLGACK-----IHK-----------NVELGEKAANRLFE----LDPDEG--GYHVLL 650 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~pd~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l 650 (812)
++.|..+++++ ...+..-+|-++..--. +.+ +...|..+|+++.. .+|... ..+...
T Consensus 523 ~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw 602 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAW 602 (677)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999988 44555668888765432 344 66788888888865 334221 122233
Q ss_pred hhhhhhcCCchHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
-++-...|.-.+...|-..|.+
T Consensus 603 ~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 603 KNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHhcCchhhHHHHHHhccH
Confidence 4444566777777777777654
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3e-10 Score=117.65 Aligned_cols=255 Identities=13% Similarity=0.047 Sum_probs=189.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003531 413 ILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV 492 (812)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 492 (812)
..-+-..+++.+.+++++...+. .++....+..-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 33444455566666666555543 2233333333344444444444433333333332 344556677777777778999
Q ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003531 493 GTARALFDMMNERH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLK 569 (812)
Q Consensus 493 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 569 (812)
++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+-|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998876433 458999999999999999999999888773 33344455666678899999999999998876
Q ss_pred HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--C---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 570 KDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--P---IEP----GITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 570 ~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~---~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
++-| |+..++-++-+....+.+.+|..+|+.. + ..+ -..+|+.|+.+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7888 7888888888888899999999999876 1 111 2346888999999999999999999999999
Q ss_pred CCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 640 DPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 640 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.|.++.+|..+|-+|...|+.+.|...+.+..-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999877643
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.5e-10 Score=115.86 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=191.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccH--HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTM--VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
.-|.++|+++.|+++++-+.+..-+.-...- ...+.-.....++..|.++-+..+... .-+......-.+.-.-.|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578999999999999888765322221111 122222222345666666655554322 1111111111222334699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 492 VGTARALFDMMNERHVTTWNVMID---GYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 492 ~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+++|.+.|.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+......+.+.|....+..+|++++...
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999888765444433 467789999999999888652 2335567778888999999999999998766
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
. .+.| |+.+.+-|.++|-+.|+-..|++..-.. ..-| +..+..=|..-|....-.+.|+.+|+++--+.|+.+.
T Consensus 585 ~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 N---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 5 4566 8999999999999999999999876443 3334 3333222444444556678999999999999998776
Q ss_pred chhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 003531 646 YHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLI 714 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 714 (812)
--..++..+.+.|+++.|..+++.+..+=. .+..|--.. +-++||.--.+.++...+|+++.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkfl------vri~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFL------VRIAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHH------HHHhccccchhHHHHHHHHHHHH
Confidence 677788889999999999999998876421 111221110 12455554555666555555543
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.6e-10 Score=117.28 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=173.6
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHH
Q 003531 454 LSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 454 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (812)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... ..|..+|.--...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46677778888888776544332 25566677999999999999999877 345667777777777788999999999
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003531 531 NKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP 608 (812)
Q Consensus 531 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p 608 (812)
++.+. +.|+ ...|..+..+..+.+.+++++..|++.+++ ++..++.|+.....+...+++++|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 6775 568888888889999999999999999976 4456889999999999999999999999887 5555
Q ss_pred C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 609 G---------ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 609 d---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+ +.+-.+++-.- -.+|+..|+.+++++++++|....+|..|+.+-...|+.++|.++|+....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 33333333332 338999999999999999999999999999999999999999999987654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.2e-10 Score=125.63 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=167.9
Q ss_pred hccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHH
Q 003531 351 ADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 351 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
...|+.+.+.+.+..+.+................+...|+.+.|.+.++++.+. ++.....+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 444455555555544443321111112223355677777888888777776653 44566777788888888888888
Q ss_pred HHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---C
Q 003531 428 YFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---E 504 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~ 504 (812)
++..+.+.+..++. .+..+- ...|..++....+..+.+...++++.++ .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543211 111000 0012222333333344556666666665 3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
.++..+..+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..+...+. .| |...+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 5677888888888889999999998888887 3454422 1233444558888888888888754 44 6677888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
++.++.+.|++++|.+.|+++ ...|+...+..|...+...|+.++|..++++.+.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888999999999999999888 677888888888888889999999999999887754
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=1.1e-10 Score=126.11 Aligned_cols=275 Identities=9% Similarity=-0.011 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHhcCCC--Cc-ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHH--hHHHHHhccccHHHHHH
Q 003531 388 CKKVDRAADIFSKLQGK--TL-VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV--SVIPALAELSVIRYAKW 462 (812)
Q Consensus 388 ~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 462 (812)
.|+++.|++.+....+. ++ ..+-.......+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776655443 12 22222233346778888888888887653 45543332 22345667788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---V--------TTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 463 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777665 4467778888899999999999998888887421 1 134444444445556667777777
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 003531 532 KMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-G 609 (812)
Q Consensus 532 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d 609 (812)
.+-+. .+.+......+..++...|+.++|...+++..+. .|+.... ++......|+.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 3456778888999999999999999999888753 4554322 233334569999999999887 5566 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 610 ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 610 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+.....+...|...|++++|...|+++++.+|++ ..+..|+.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888999999999999999999999999964 5678999999999999999999987654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=4e-10 Score=122.38 Aligned_cols=289 Identities=13% Similarity=0.042 Sum_probs=150.9
Q ss_pred hCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 003531 317 EGGNPEEAMRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 395 (812)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776665543 23322 223333445555666666666666554432222233344466667777777777
Q ss_pred HHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC
Q 003531 396 DIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF 472 (812)
Q Consensus 396 ~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 472 (812)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 777776543 344566677777777777777777777776643221 11100000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHH---H
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITF---L 546 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 546 (812)
..+..+++.-......+...+.++..+. .+...+..++..+...|+.++|.+++++.++. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223444445555542 47778888888888888999999888888883 4554321 1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNV 626 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~ 626 (812)
.........++.+.+.+.++...+. .| ..|+.....++++.|.+.|++
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~---~p-----------------------------~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKN---VD-----------------------------DKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHh---CC-----------------------------CChhHHHHHHHHHHHHHcccH
Confidence 1111112234444444444444432 12 111113445555555555555
Q ss_pred HHHHHHHH--HHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 627 ELGEKAAN--RLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 627 ~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
++|.+.++ ++++..|++ ..+.+|+.++.+.|+.++|.+++++.
T Consensus 352 ~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555 344455533 23445555555555555555555544
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2.5e-10 Score=123.98 Aligned_cols=250 Identities=13% Similarity=0.011 Sum_probs=172.5
Q ss_pred HcCChHHHHHHHHHHhhCCCCCCccc-HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003531 418 QNGRVNEALNYFCKMRSKNIKPDSFT-MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496 (812)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 496 (812)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666655443 233222 22333445556777777777766655432333334444577788899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH---HhcCcHHHHHHHHHHHHH
Q 003531 497 ALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC---SHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 497 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~ 570 (812)
+.++.+.+ .+...+..+...|.+.|++++|.+++.++.+.++.+..........+. ...+..+++.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998873 356678888999999999999999999999986543332211111222 333444444455555554
Q ss_pred hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 571 DYG--IEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITV---FGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 571 ~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
... ...+...+.+++..+.+.|+.++|.+.+++. ...||... +..........++.+.+.+.+++.++..|+|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 311 1137889999999999999999999999998 54565442 12222223445888999999999999999999
Q ss_pred --cchhhHhhhhhhcCCchHHHHHHHH
Q 003531 645 --GYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 645 --~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
.....++++|.+.|+|++|.+.++.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8889999999999999999999995
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.7e-12 Score=133.82 Aligned_cols=251 Identities=15% Similarity=0.145 Sum_probs=104.3
Q ss_pred HHHHHHHhCCChHHHHHHHHhc-C----CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhcc
Q 003531 380 SLISMYSKCKKVDRAADIFSKL-Q----GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAEL 454 (812)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 454 (812)
.+..++.+.|++++|.+++++. . ..|+.-|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466677778888888887432 2 224455666666666777888888888887765422 33444455544 577
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhCCCHHHHHHH
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGTHGLGKAAVEL 529 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (812)
++.++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776554432 455566777888888899998888888754 35677888888889999999999999
Q ss_pred HHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003531 530 FNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE 607 (812)
Q Consensus 530 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 607 (812)
+++.++ ..|+ ......++..+...|+.+++.++++...+.. ..+...+..++.+|...|+.++|+..+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999988 5675 5567788888888999999888888887652 346677888899999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 608 P-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 608 p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
| |+.+...+..++.+.|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 677778888889999999999999888765
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.4e-09 Score=105.74 Aligned_cols=414 Identities=12% Similarity=0.106 Sum_probs=286.4
Q ss_pred hCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 003531 286 KCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFV 362 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 362 (812)
..+++..|+.+|+.... +++..|--.+..=.++..+..|..+++..+..-...|..-| --+..=...|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45667778888887765 56677777777778888888888888887764333333322 222233456888888888
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC
Q 003531 363 HKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQ--GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD 440 (812)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 440 (812)
|..-.+. .|+...|++.|+.-.+-..++.|+.++++.. .|++.+|--...-=-++|+...|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 8876654 7888888888888888888888888888754 567777877777777888888888888877653 122
Q ss_pred cccHHhHHHHH----hccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCH---HHHHHH-----HHhcCC---
Q 003531 441 SFTMVSVIPAL----AELSVIRYAKWIHALVIRSCFEK-NVFVMTALIDMYAKCGAV---GTARAL-----FDMMNE--- 504 (812)
Q Consensus 441 ~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~---~~A~~~-----~~~m~~--- 504 (812)
...-..+..++ ......+.|.-++..++..=... ....|..++..--+-|+. +++.-- ++.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22223333333 34567788888888887753222 244555555544455554 333322 222222
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh-------hHHHHHHHHH---HhcCcHHHHHHHHHHHHHhcCC
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND-------ITFLCAISAC---SHSGLVEEGIHYFTSLKKDYGI 574 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 574 (812)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+++.+.++|+...+ +
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---l 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---L 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---h
Confidence 35668888888888889999999999999985 66632 1222222233 457889999999998874 6
Q ss_pred CC-ChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 575 EP-VMDHYGAMVDLL----GRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 575 ~p-~~~~~~~li~~~----~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
.| ...++.-+--+| .|+-++..|.+++-.+ +.-|..-++...+..-.+.++++...+++++.++..|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 66 455555554444 4888999999999776 88888889988888888999999999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLET 712 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 712 (812)
..+.+-...|+++.|+.+|+.+.+......|..-|-. .--|-.....+..+..+|+.|.+
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999887544445443310 00232233334555556655443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=1.8e-07 Score=98.49 Aligned_cols=525 Identities=13% Similarity=0.164 Sum_probs=269.8
Q ss_pred HHHHHhhcCCChhHHHHhhccC----CC-CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCc
Q 003531 77 KLVSLFCKYNSLSDAARVFEPI----PD-KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDV 151 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 151 (812)
.-+....++|++..-++.|+.. |. .....|...+......|.++-++.+|++.++. .|.. -.--|.-++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHHhc
Confidence 4455566788888888888753 22 23446888888888888888899999888763 3433 45556667788
Q ss_pred CChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---hHHHHHhccCCC--CCc--chHHHHHHHHHhCC
Q 003531 152 GEIRRGKEIHGQLIVNG------FSLDLFAMTGVVNMYAKCGQI---EEAYKMFDRMPE--RDL--VSWNTIVAGFAQNG 218 (812)
Q Consensus 152 ~~~~~a~~l~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g 218 (812)
+++++|.+.+..++... .+.+-..|+-+-+..++.-+. -....+++.+.. +|. ..|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 88888888887776331 245566777777766654322 223345555543 333 36888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHh
Q 003531 219 FAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFD 298 (812)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 298 (812)
.++.|.++|++-... ..+..-|+.+.++|+.-.....+..+- .....+..+. ..-+++-...-|+
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~~a~~e 327 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELHMARFE 327 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHHHHHHH
Confidence 999999999887664 223444666666665433222222111 0111111110 0012222333333
Q ss_pred cCCC---------------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 003531 299 GMKS---------------RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVH 363 (812)
Q Consensus 299 ~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 363 (812)
.+.. .++..|..-+. +..|+..+-...|.+..+. +.|-..
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka---------------------- 382 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA---------------------- 382 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC----------------------
Confidence 3322 12333333222 1234444444455444432 222111
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc-------ccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 364 KLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL-------VSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...-...|..+.+.|-..|+++.|+.+|++...-+- .+|..-...=.++.+++.|+++.++...
T Consensus 383 -------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~-- 453 (835)
T KOG2047|consen 383 -------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH-- 453 (835)
T ss_pred -------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc--
Confidence 011223566777888888888888888887765432 2455555555667778888887776654
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH--
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMI-- 514 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li-- 514 (812)
.|.... + .+...+..-+++ + ..+..+|+..++.--..|-++....+++++.+--+.|=..++
T Consensus 454 -vP~~~~----~-~~yd~~~pvQ~r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 454 -VPTNPE----L-EYYDNSEPVQAR-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred -CCCchh----h-hhhcCCCcHHHH-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222211 1 111111111110 1 113344555555555555566666666555532111111111
Q ss_pred -HHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH---HhcCcHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHH
Q 003531 515 -DGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISAC---SHSGLVEEGIHYFTSLKKDYGIEPVM--DHYGAMVDL 587 (812)
Q Consensus 515 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~ 587 (812)
.-+-.|.-++++.++|++-+..--.|+.. .|+..|.-+ .....++.|..+|++..+ |.+|.- ..|-...+.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 11233445556666665555542223322 333333322 122345566666666553 444421 112111222
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch--hhHhhhhhhcCCch
Q 003531 588 LGRAGRLNEAWDFIQKM--PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH--VLLANIYAAASMWD 661 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~--~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~ 661 (812)
=-+-|....|+++++++ ..++. ...|+..|.--...=-+.....+|+++++.-|++-.-- .-.+++-.+.|..+
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 22445555566666655 22221 22455444332222113345566777777666543322 23456666777777
Q ss_pred HHHHHHHHHHH
Q 003531 662 KLAKVRTIMEK 672 (812)
Q Consensus 662 ~a~~~~~~m~~ 672 (812)
.|+.++..-.+
T Consensus 676 RARaIya~~sq 686 (835)
T KOG2047|consen 676 RARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhhhh
Confidence 77777655544
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=3.9e-10 Score=112.92 Aligned_cols=198 Identities=13% Similarity=0.037 Sum_probs=166.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999998762 356788889999999999999999999999853 3345677788889
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a 629 (812)
+...|++++|.+.++...+..........+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864222224567888899999999999999999887 4455 466888888999999999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...++++++..|+++..+..++.++...|++++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998877653
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=7.4e-08 Score=103.84 Aligned_cols=459 Identities=14% Similarity=0.090 Sum_probs=288.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHh---ccCChHHH-------------------HHHH----HHHHHhC
Q 003531 216 QNGFAELALDLVTRMHEEGRRGDFITIVSILPAVA---NVGSLRIG-------------------KAVH----GYAMRAG 269 (812)
Q Consensus 216 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a-------------------~~~~----~~~~~~g 269 (812)
+.+..++++.-+..-...+..-+..++..+...+. ..++.++. .... .++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666665555555555555444332 22233322 2211 1122234
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhH-HH
Q 003531 270 FDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTI-ME 345 (812)
Q Consensus 270 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ 345 (812)
+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..++++-......|+..+. ..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 567888999999999999999999999998765 45567999999999999999999999987765434544443 33
Q ss_pred HHHHHh-ccCChHHHHHHHHHHhhc--CC--CCChhHHHHHHHHHHhCC-----------ChHHHHHHHHhcCCC---Cc
Q 003531 346 ALHACA-DLGDLERGIFVHKLLDQL--KL--GTDVSMTNSLISMYSKCK-----------KVDRAADIFSKLQGK---TL 406 (812)
Q Consensus 346 ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~~---~~ 406 (812)
.-..|. +.+.++++...-..++.. +. ......+-.+.-+|...- ...++...+++..+. |+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333343 457777777776666652 11 122334444444443211 123455556665433 33
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRS-CFEKNVFVMTALIDM 485 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~ 485 (812)
.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+..... |..... ...-++.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhhhh
Confidence 3333344457778899999999999988765667777777777788888899998888766542 221100 0001111
Q ss_pred HHhcCCHHHHHHHHHhcC------------------------------C-CCh-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003531 486 YAKCGAVGTARALFDMMN------------------------------E-RHV-TTWNVMIDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 486 y~k~g~~~~A~~~~~~m~------------------------------~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 533 (812)
-.+-++.++|......+. + .|. .++..+..-... +.+.+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 122344444433322221 0 111 122222111111 1111100000 2
Q ss_pred HhCCCCCCh--------hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 534 LEGPTKPND--------ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 534 ~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
...-+.|.. ..|......+...+..++|...+.+.. ++.| ....|...+..+...|+++||.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 222223322 234456667788899999987776665 4566 6778888889999999999999999887
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCc
Q 003531 605 -PIEPG-ITVFGAMLGACKIHKNVELGEK--AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPG 680 (812)
Q Consensus 605 -~~~pd-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 680 (812)
.+.|| +.+..++...+.+.|+...|.. ++..+++++|.++.++..||.++-+.|+.++|...|....+... ..|-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV 789 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPV 789 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCc
Confidence 77886 4588889999999999998888 99999999999999999999999999999999999999887533 3343
Q ss_pred ccE
Q 003531 681 CSL 683 (812)
Q Consensus 681 ~s~ 683 (812)
.+|
T Consensus 790 ~pF 792 (799)
T KOG4162|consen 790 LPF 792 (799)
T ss_pred ccc
Confidence 444
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.2e-08 Score=104.01 Aligned_cols=405 Identities=12% Similarity=0.008 Sum_probs=252.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-cchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh
Q 003531 209 TIVAGFAQNGFAELALDLVTRMHEEGRRGD-FITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI-VNVSTALVDMYAK 286 (812)
Q Consensus 209 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~ 286 (812)
....-|.++|.+++|++.|....+ ..|| .+-|.....+|...|+|+...+.-...++. .|+ +-.+..-..++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 344567788888889888888877 4677 555666667777888888877776666554 343 3344555566777
Q ss_pred CCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHH--------HHH-c--CCCCChhhHHHHHHHHhccCC
Q 003531 287 CGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQK--------MLD-Q--GVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~-~--g~~p~~~t~~~ll~a~~~~~~ 355 (812)
.|++++|+.= +|-..+..++....-.--+.+++++ -.. . .+.|......+.+..+...-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 7777777532 2222333333322222223333322 222 1 123443333333332211000
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC-CChHHHHHHHHhc-------CCCC---c------ccHHHHHHHHHH
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC-KKVDRAADIFSKL-------QGKT---L------VSWNAMILGYAQ 418 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~~-------~~~~---~------~~~~~li~~~~~ 418 (812)
..+...+-..|...-..+=..|... ..+..|...+.+- ...+ . .+.+.-..-+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0000000011111111111112111 1233333333221 1111 1 111111222345
Q ss_pred cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARAL 498 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 498 (812)
.|+.-.|.+-|+..+.....++.. |.-+-.++....+.++....|..+.+.+ +-++.+|..-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 688899999999998865444432 6677778899999999999999998866 33566777778888888999999999
Q ss_pred HHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 499 FDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 499 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
|++... .++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+..+++++.|.+.|+..+. +.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hc
Confidence 998874 35667777777777888999999999999984 444467899999999999999999999998874 44
Q ss_pred CC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 576 PV---------MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 576 p~---------~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
|+ +.+..+++-.-.+ +++.+|.++++++ .+.|. ...+-+|...-.+.|+.++|+++|++...+--
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 1122222222223 8999999999998 77774 45888899999999999999999999876543
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.6e-07 Score=99.75 Aligned_cols=457 Identities=17% Similarity=0.208 Sum_probs=266.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHH----HHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHH
Q 003531 176 MTGVVNMYAKCGQIEEAYKMFDRMPE--RDLVSWNTI----VAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAV 249 (812)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 249 (812)
+..+.+.+.+.|-...|++.+..+.. +.++.-+.+ +-.|.-.-.++++++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55666778888888888888877763 222211111 234555567888999999999888887777666665555
Q ss_pred hccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC----------------
Q 003531 250 ANVGSLRIGKAVHGYAMR-----------AGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---------------- 302 (812)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------- 302 (812)
...--.+.-.++|+.... .++..|..+.-..|.+-++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 443333333444433221 13455666667889999999999998887654321
Q ss_pred ---------------CCchhH------HHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh-------------HHHHHH
Q 003531 303 ---------------RNVVSW------NSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT-------------IMEALH 348 (812)
Q Consensus 303 ---------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll~ 348 (812)
+|.+.| --.|..|.+.=++...-.+...+++- .-+... ...+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHHH
Confidence 122221 11344454443333322222222211 111111 112223
Q ss_pred HHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHH-----------------------------------
Q 003531 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDR----------------------------------- 393 (812)
Q Consensus 349 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----------------------------------- 393 (812)
-+.+.+++..-...++..+..|.. |+.++|+|...|...++-.+
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 334444444455555555566633 66677777666653332111
Q ss_pred -----------------------------HHHHHH-----------hcC------CCCcccHHHHHHHHHHcCChHHHHH
Q 003531 394 -----------------------------AADIFS-----------KLQ------GKTLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 394 -----------------------------A~~~f~-----------~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
-.+++. ++. ..|+..-+.-+.++...+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 111110 000 0122233344556666667777777
Q ss_pred HHHHHhhCCCCCCccc----HHhH-HHH---------------------------HhccccHHHHHHHHHHHHHhCCCCc
Q 003531 428 YFCKMRSKNIKPDSFT----MVSV-IPA---------------------------LAELSVIRYAKWIHALVIRSCFEKN 475 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t----~~~l-l~a---------------------------~~~~~~~~~a~~i~~~~~~~~~~~~ 475 (812)
+++++.-. |+.++ ...+ +-. +...+-.++|..+|.. +..+
T Consensus 1006 LLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n 1077 (1666)
T KOG0985|consen 1006 LLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMN 1077 (1666)
T ss_pred HHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hccc
Confidence 77776532 21111 1111 111 1111122222222221 1222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS 555 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 555 (812)
....+.||+ .-+.++.|.++-++..+ ...|..+..+-.+.|...+|++-|-+. .|+..|.-++.++++.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222322 23445555555555443 457999999999999999999887543 3577899999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
|.+++-..++.-..++ .-+|.++ +.|+-+|++.+++.|-++++. .|+..-....+.-|...|.++.|.-+|.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~- 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS- 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-
Confidence 9999999988655544 5666544 569999999999999988884 5788888899999999999999998886
Q ss_pred HhccCCCCccchhhHhhhhhhcCCchHHHHHHHH
Q 003531 636 LFELDPDEGGYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
+...|..|+..+...|.++.|...-++
T Consensus 1219 -------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 -------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677788888888888877654433
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.8e-08 Score=103.30 Aligned_cols=270 Identities=16% Similarity=0.138 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 003531 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYS 386 (812)
Q Consensus 307 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 386 (812)
..-.-..-+...+++.+..+++++..+.. ++....+..=|..+...|+...-..+-..+++. .+....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 33334444555666666666666665541 223333333333444445444443333333333 2335566777777777
Q ss_pred hCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHH
Q 003531 387 KCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKW 462 (812)
Q Consensus 387 ~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 462 (812)
-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. -|. ..-+..+--
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgm------------- 388 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGM------------- 388 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHH-------------
Confidence 77888888888877654433 57888888888888888888877665442 111 111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhC--C
Q 003531 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEG--P 537 (812)
Q Consensus 463 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g 537 (812)
-|.+.++++-|.++|.+.. ..|+...+-+.-..-+.+.+.+|..+|+..+.. .
T Consensus 389 ----------------------ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 389 ----------------------EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred ----------------------HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 2444455555555555443 234445555554445556666666666655520 0
Q ss_pred C---CC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 538 T---KP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 538 ~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
+ ++ -..+++.|..+|.+.+.+++|+..|+.... ..| +..++.+++..|...|+++.|.+.|.+. .+.||..
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 0 11 234566777777777777777777777663 344 6777777777777777777777777776 6677766
Q ss_pred HHHHHHH
Q 003531 612 VFGAMLG 618 (812)
Q Consensus 612 ~~~~ll~ 618 (812)
+...+++
T Consensus 524 ~~~~lL~ 530 (611)
T KOG1173|consen 524 FISELLK 530 (611)
T ss_pred HHHHHHH
Confidence 5555554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.3e-08 Score=101.82 Aligned_cols=286 Identities=13% Similarity=0.117 Sum_probs=188.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003531 318 GGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADI 397 (812)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (812)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+....+.+..-+++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766554333 2345555566667777777777777777765566667777777888888888888877
Q ss_pred HHhcC---CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 398 FSKLQ---GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 398 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
.+++. .+++.........|.+.|++.+.+.++..|.+.|+--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 76544 45677888888999999999999999999998876444221 111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 11234444444443344444444555555 34455666677777788888888888888887776666 222335
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
+.+-++...-++..+.-.+.++..| ..+.+|+..|.+.+.+.+|.+.|+.. +..|+...|+-+..++-+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5666666666666666555544444 56666777777777777777777665 66677777777777777777777777
Q ss_pred HHHHHHhc
Q 003531 631 KAANRLFE 638 (812)
Q Consensus 631 ~~~~~~~~ 638 (812)
...++.+-
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 77776653
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=9.8e-09 Score=99.32 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=174.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCC-CC--ChhHHHHHHHHHHhCCChH
Q 003531 317 EGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKL-GT--DVSMTNSLISMYSKCKKVD 392 (812)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~--~~~~~~~Li~~y~~~g~~~ 392 (812)
-++++++|.++|-+|.+. .|. ..+-.++-+.+.+.|..+.|+++|..+.++.- .. -......|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 357888999999999873 222 22344566677888888999999888876531 11 1233455677788899999
Q ss_pred HHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH
Q 003531 393 RAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR 469 (812)
Q Consensus 393 ~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 469 (812)
.|+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-.+..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 99999988877544 345667888888899999998888887765444322111
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003531 470 SCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL 546 (812)
Q Consensus 470 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 546 (812)
..|.-|...+.-..+++.|..++.+..+-| +..=-.+...+...|++++|++.++...+++..--..+..
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 112333444444556666666666665322 2222334455667777777777777777643222234556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFI-QKMPIEPGITVFGAMLGACKI--- 622 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~-~~~~~~pd~~~~~~ll~~~~~--- 622 (812)
.|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...+ +...-+|+...+.-|+..-..
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 6667777777777777777776643 344444444555444444445555444 334556777776666665432
Q ss_pred cCCHHHHHHHHHHHh
Q 003531 623 HKNVELGEKAANRLF 637 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~ 637 (812)
-|...+....++.++
T Consensus 331 eg~~k~sL~~lr~mv 345 (389)
T COG2956 331 EGRAKESLDLLRDMV 345 (389)
T ss_pred ccchhhhHHHHHHHH
Confidence 233444445555554
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=2.7e-11 Score=87.33 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc
Q 003531 202 RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251 (812)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 251 (812)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=2e-07 Score=100.54 Aligned_cols=440 Identities=12% Similarity=0.063 Sum_probs=261.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchH-H
Q 003531 168 GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITI-V 243 (812)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ 243 (812)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-......|+..+- .
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998653 34457999999999999999999999887655434544443 3
Q ss_pred hHHHHHh-ccCChHHHHHHHHHHHHhC--CC--CchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhC
Q 003531 244 SILPAVA-NVGSLRIGKAVHGYAMRAG--FD--SIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEG 318 (812)
Q Consensus 244 ~ll~a~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (812)
..-+.|. +.+..++|...-..++... .. .....+-.+.-+|...- ....++.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HH
Confidence 3334443 3445555555555544411 00 01111111222221100 00000000 11
Q ss_pred CChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003531 319 GNPEEAMRIFQKMLDQGV-EPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADI 397 (812)
Q Consensus 319 g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (812)
....++++.+++.++.+. .|+..-|.++ -++-.++++.|.+......+.+-..+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 123466667776665432 3433333333 2445567777777777777776667777777777777777888888877
Q ss_pred HHhcCCCCcccHH---HHHHHHHHcCChHHHHHHHHHHhhC--CCCCCcccHHhHHHHHhccccHHHHHHHHHHHH--Hh
Q 003531 398 FSKLQGKTLVSWN---AMILGYAQNGRVNEALNYFCKMRSK--NIKPDSFTMVSVIPALAELSVIRYAKWIHALVI--RS 470 (812)
Q Consensus 398 f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~ 470 (812)
.+...+.-...++ .-|..-..-++.++|+.....+..- ...|-..+ ++-....+....+. ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcc
Confidence 7655432111111 1122222345666666665555431 00000000 00000000000000 00
Q ss_pred CCCCchhHHHHH---HHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-
Q 003531 471 CFEKNVFVMTAL---IDMYAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP- 540 (812)
Q Consensus 471 ~~~~~~~~~~~l---i~~y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 540 (812)
.....+.++..+ +..=.+.-..+..+..+...+.|+ ...|......+...++.++|...+.+... +.|
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 001111222222 221111111122222222222333 23577777888899999999988888876 444
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHH
Q 003531 541 NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWD--FIQKM-PIEP-GITVFGA 615 (812)
Q Consensus 541 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~--~~~~~-~~~p-d~~~~~~ 615 (812)
....|......+...|.+++|.+.|.... -++| ++....+++.++.+.|+-.-|.. ++..+ .+.| +...|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 35566666677888999999999998776 5788 68889999999999996655555 88777 6777 6779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
|+..+.+.|+.+.|...|.-++++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999987764
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4.4e-11 Score=86.18 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.8e-07 Score=97.90 Aligned_cols=430 Identities=14% Similarity=0.143 Sum_probs=241.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHH--HhC
Q 003531 212 AGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA--LVDMY--AKC 287 (812)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y--~~~ 287 (812)
.-+.++|++++|+....++...+ +-|...+..=+-++.+.+.++.|..+... .+. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 33445555666666666555543 22223344444444555555555533221 111 011111 12333 367
Q ss_pred CChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHH
Q 003531 288 GRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLL 366 (812)
Q Consensus 288 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~ 366 (812)
+..++|...++.....+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .+ ..+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHH
Confidence 889999999886655555566666778889999999999999997765432211 222222221111 01 011
Q ss_pred hhcCCCCChhHHHH---HHHHHHhCCChHHHHHHHHhc--------CCCCc-----c-----cHHHHHHHHHHcCChHHH
Q 003531 367 DQLKLGTDVSMTNS---LISMYSKCKKVDRAADIFSKL--------QGKTL-----V-----SWNAMILGYAQNGRVNEA 425 (812)
Q Consensus 367 ~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~A 425 (812)
......| ..+|.. ..-.+...|++.+|+++++.. ...|. . .---|.-.+...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1222222 222322 234567789999999999876 11111 1 122344567788999999
Q ss_pred HHHHHHHhhCCCCCCcccHHhHHH---HHhccccHHH--HHHHH-----------HHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 426 LNYFCKMRSKNIKPDSFTMVSVIP---ALAELSVIRY--AKWIH-----------ALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 426 ~~~~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--a~~i~-----------~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
.+++...+... .+|........+ +...-.++-. ....+ .......-...+..-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998864 344432222211 1111111111 01111 01111111112333355666665
Q ss_pred CCHHHHHHHHHhcCCCC-hHHHHHHHH-HHH-hCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHH
Q 003531 490 GAVGTARALFDMMNERH-VTTWNVMID-GYG-THGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHY 564 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~-~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 564 (812)
+..+.+.++....+... ...+.+++. ++. +...+.+|.+++...-+. .|.. +.....+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56677888877777422 233444443 332 233577888888877663 3443 3445556667889999999999
Q ss_pred HH--------HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHH
Q 003531 565 FT--------SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--------PIEPG-ITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 565 ~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~ 627 (812)
+. .+.+. +.. +.+..+++.++.+.+.-+-|..++.++ .-.+. ..+|.-+...-.++|+.+
T Consensus 399 l~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 44422 333 456677888999888766666665554 21222 224444444456789999
Q ss_pred HHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHH
Q 003531 628 LGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
+|...++++++.+|++....+.+..+|+... .+.|..+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999998887653 3444443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=3.5e-09 Score=119.56 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcc-cHHhHHHHHh---------ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 422 VNEALNYFCKMRSKNIKPDSF-TMVSVIPALA---------ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 422 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
.++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45666677666653 34432 2222222221 2244677777777777764 3466778888888999999
Q ss_pred HHHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 492 VGTARALFDMMN--ER-HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 492 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
+++|...|++.. .| +...|..+...|...|++++|+..+++.++ ..|+.. .+..++.++...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999877 34 466888899999999999999999999999 567643 334445567778999999999998
Q ss_pred HHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 568 LKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-TVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 568 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
+.+. ..| +...+..+..+|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8754 235 4566788899999999999999999987 555654 45566666677777 478888888776443333
Q ss_pred cchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 645 GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.....+..+|+-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3334478888899999988887 666654
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=5.7e-08 Score=94.92 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=170.5
Q ss_pred CCChHHHHHHHhcCCC--CCchhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChHHHHH
Q 003531 287 CGRVETARLVFDGMKS--RNVVSWNSM-IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL--GDLERGIF 361 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~ 361 (812)
.-.+++|.+++.++.. |+-...|.- .-.|.+..-++-+.+++.--++. -||+ |+..-+.+|..- =+-..+.+
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHH
Confidence 3456778888777664 444455543 34566777777777777766654 3443 333334444322 11122222
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhC-----CChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 362 VHKLLDQLKLGTDVSMTNSLISMYSKC-----KKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 362 i~~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
-.+.+.+.+-..- ..+.-.++. ..-+.|.+++-.+...=+.+--.++--|.++++..+|..+.+++.-
T Consensus 241 E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-- 313 (557)
T KOG3785|consen 241 EKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP-- 313 (557)
T ss_pred HHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--
Confidence 2222222221110 111112221 2234555555443332223333455567888999999888877642
Q ss_pred CCCCcccHHhHHHHH-----hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH
Q 003531 437 IKPDSFTMVSVIPAL-----AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWN 511 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~-----~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~ 511 (812)
..|-.+..-.+..+. .....+..|.+.++.+-.++..-|.. .--.
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------------------------pGRQ 363 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------------------------PGRQ 363 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc------------------------------cchH
Confidence 233333332222221 11122333444444444333332221 1223
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHhh
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYG-AMVDLLGR 590 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~ 590 (812)
+|.+.+.-..++++.+..++....- +.-|...-..+..|.+..|.+.+|+++|-.+... .++ +..+|. .|...|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHh
Confidence 3344444444555555555555443 2223333334677888888888888888766521 222 344444 45678889
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhccCCCCccch
Q 003531 591 AGRLNEAWDFIQKMPIEPGITVFGAML-GACKIHKNVELGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 591 ~g~~~eA~~~~~~~~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 647 (812)
+|+.+-|++++-++....+..+...++ +-|.+.+.+--|-++|..+-.++|. ++.+
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 999999999998886444666555555 4599999999999999999999994 5543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-07 Score=93.56 Aligned_cols=365 Identities=13% Similarity=0.061 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCC-CchhHHHHHHHHHhCC-ChhHH--------------HHHHHHHHHcC--
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKSR-NVVSWNSMIAAYVEGG-NPEEA--------------MRIFQKMLDQG-- 335 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g-- 335 (812)
...-.-.+..|...++-++|.....+.+.. ...--|.|+.-+.+.| +..++ ++.+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 333445566677777788888887777753 3333444444333332 11121 12222222222
Q ss_pred -------------CCCChhhHHHHHHHH--hccCChHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 003531 336 -------------VEPTNVTIMEALHAC--ADLGDLERGIFVHKLLDQL-KLGTDVSMTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 336 -------------~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
+.|...+....+.++ +..++...+.+.+..+.+. -++.|+....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 223333444444443 3345555555555444433 467788889999999999999999999999
Q ss_pred hcCCCCcccHHHH---HHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 003531 400 KLQGKTLVSWNAM---ILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNV 476 (812)
Q Consensus 400 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 476 (812)
+...-|+.+...| .-.+.+.|+.++...+...+.... +-....|..-+.......+.+.|..+-+..++... .++
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccc
Confidence 8876666544333 334567888888877777765531 11112222223333455677777777776666542 233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAI-SAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~ 552 (812)
..+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|++.+|.-+-+...+. +.-+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 333333455667789999998888765 3 47789999999999999999998888777663 334455555442 233
Q ss_pred H-hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 553 S-HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 553 ~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
. ....-++|..++++-. .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|+..++..+.+.+|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2333577888887765 46774 566777888888999999999999887 6678988889999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 003531 630 EKAANRLFELDPDEG 644 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (812)
...|..++.++|++.
T Consensus 491 m~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHhcCccch
Confidence 999999999999764
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=2.8e-06 Score=89.86 Aligned_cols=446 Identities=13% Similarity=0.162 Sum_probs=261.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHH
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPE-----RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILP 247 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 247 (812)
+.+|-..+....+.|++...+..|+.... .....|...|.-....|-++-++.+|++.++- .|.. -..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 45777788888899999999999987543 34457998898888899999999999999874 3433 555677
Q ss_pred HHhccCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhCCChH---HHHHHHhcCCC--CCc--hhHHHHHHH
Q 003531 248 AVANVGSLRIGKAVHGYAMRA------GFDSIVNVSTALVDMYAKCGRVE---TARLVFDGMKS--RNV--VSWNSMIAA 314 (812)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~m~~--~~~--~~~~~li~~ 314 (812)
.++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.- ....+++.+.. +|. ..|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 788899999999988887643 12455667777777776654332 34455555554 333 469999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHH
Q 003531 315 YVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRA 394 (812)
Q Consensus 315 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 394 (812)
|.+.|.+++|.++|++.+.. ..+..-|+.+.++|+.-.....+..+- .....+..+. -.-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 99999999999999998765 334445666666665433222221111 0101111110 00112233
Q ss_pred HHHHHhcCCC---------------CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHH
Q 003531 395 ADIFSKLQGK---------------TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRY 459 (812)
Q Consensus 395 ~~~f~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 459 (812)
..-|+.+..+ ++..|..-+. +..|+..+-...|.+..+. +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 3334433322 2233432222 2345566666666666553 3332111
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h----HHHHHHHHHHHhCCCHHHHHHHHHH
Q 003531 460 AKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---V----TTWNVMIDGYGTHGLGKAAVELFNK 532 (812)
Q Consensus 460 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~ 532 (812)
..-...|..+.+.|-..|+++.|..+|++..+-+ + ..|-.-...-.++.+++.|+++.++
T Consensus 384 -------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 384 -------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred -------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 0112234555556666666666666666555321 1 2343334444455566666666555
Q ss_pred HHhCCCC----------C-------ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 003531 533 MLEGPTK----------P-------NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 533 m~~~g~~----------p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 595 (812)
.....-. | +...|...+..-...|-++....+|+++..-.-..|.+ .-...-.+-...-++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFE 528 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHH
Confidence 5431101 1 12234445555556677777777888777543334432 222223344566788
Q ss_pred HHHHHHHhC-C-C-CCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCC-c-cchhhHhhhhhhcCCchHHHHH
Q 003531 596 EAWDFIQKM-P-I-EPGIT-VFGAMLGACKI---HKNVELGEKAANRLFELDPDE-G-GYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 596 eA~~~~~~~-~-~-~pd~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~-~-~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
+|.+.+++- + + -|++. +|++.+.-+.+ ...+|.|..+|+++++.-|.. . .+|.+.+..--+-|.-..|..+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888876 3 2 24443 88888876543 237888999999998877622 2 2344445444555777777777
Q ss_pred HHHHH
Q 003531 667 RTIME 671 (812)
Q Consensus 667 ~~~m~ 671 (812)
++++.
T Consensus 609 yerat 613 (835)
T KOG2047|consen 609 YERAT 613 (835)
T ss_pred HHHHH
Confidence 77654
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=5.9e-08 Score=97.10 Aligned_cols=289 Identities=12% Similarity=0.061 Sum_probs=186.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003531 217 NGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLV 296 (812)
Q Consensus 217 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 296 (812)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-++...+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777655554333 2335555566667777777777777777665566677777777778888888888776
Q ss_pred HhcCC---CCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCC
Q 003531 297 FDGMK---SRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGT 373 (812)
Q Consensus 297 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 373 (812)
.+.+. .++.........+|.+.|++.+...++.+|.+.|.--|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 66554 367788888889999999999999999999888765443210 00
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHH
Q 003531 374 DVSMTNSLISMYSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPA 450 (812)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 450 (812)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+- ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 111233333333333333333344454443 24555666777788888888888888888877766661 12223
Q ss_pred HhccccHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHH
Q 003531 451 LAELSVIRYAKWIHALVIR-SCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 451 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
+.+.++.+.-.+..+...+ .+- ++..+.+|...|.|.+.+.+|.+.|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555554444444333 333 33667777777888888888888887655 467777777777777777777777
Q ss_pred HHHHHHHhCCCCC
Q 003531 528 ELFNKMLEGPTKP 540 (812)
Q Consensus 528 ~~~~~m~~~g~~p 540 (812)
+.+++.+..-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 7777766433333
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=9.3e-09 Score=110.39 Aligned_cols=230 Identities=17% Similarity=0.135 Sum_probs=167.8
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIRS-----CF-EKNV-FVMTALIDMYAKCGAVGTARALFDMMNE--------RH 506 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~ 506 (812)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445566666666777766666665543 21 1121 2234566788889999999988887762 12
Q ss_pred ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC--C
Q 003531 507 ---VTTWNVMIDGYGTHGLGKAAVELFNKMLE-----GPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYG--I 574 (812)
Q Consensus 507 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 574 (812)
..+++.|...|...|++++|...+++..+ .|..+.. .-++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34777888889999999988888877654 2222222 2467778889999999999999987765543 2
Q ss_pred CC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc--
Q 003531 575 EP----VMDHYGAMVDLLGRAGRLNEAWDFIQKM---------PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFE-- 638 (812)
Q Consensus 575 ~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 638 (812)
.+ -..+++.|...|...|+++||.++++++ ...+. ...++.|..+|.+.++++.|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2578999999999999999999999887 11232 44677888999999999999999998765
Q ss_pred --cCCCCc---cchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 639 --LDPDEG---GYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 639 --~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
..|+++ .+|..|+.+|...|++++|.++-....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 468899999999999999999987775
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=5.2e-09 Score=96.84 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVD 586 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 586 (812)
+...|.-+|.+.|+...|..-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.| +..+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677889999999999999999999 6676 5589999999999999999999999887 4677 7889999999
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchH
Q 003531 587 LLGRAGRLNEAWDFIQKMPIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 662 (812)
-+|..|++++|...|+++-..|+ ..+|..++....+.|+.+.|+..+++.++++|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999833332 45888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 003531 663 LAKVRTIMEKKGL 675 (812)
Q Consensus 663 a~~~~~~m~~~g~ 675 (812)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877643
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=5.5e-06 Score=88.45 Aligned_cols=505 Identities=15% Similarity=0.135 Sum_probs=252.5
Q ss_pred cCCChhHHHHhhccCCC-CC-hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHH
Q 003531 84 KYNSLSDAARVFEPIPD-KL-DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIH 161 (812)
Q Consensus 84 ~~g~~~~A~~~f~~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 161 (812)
..|+++.|...++.... |+ ...|-.+...-...|++.-|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 34566666666654332 22 223544444444444444443333 3345566666666
Q ss_pred HHHH-------HhC-CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 162 GQLI-------VNG-FSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 162 ~~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
+... +.| -..+.+-..+++.+.. .++.+|..+|-+-. . -..-|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn---~--te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN---A--TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc---c--HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 5443 112 2233444445554443 45777887775321 1 123455666666777777664422
Q ss_pred CCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC--CCCchhHHHH
Q 003531 234 GRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK--SRNVVSWNSM 311 (812)
Q Consensus 234 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~l 311 (812)
|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|..|.|.|..-.|.+.-..=. ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 2111111223445556666655554433 1112223456788889888887776543221 2455555556
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhH-HHHHHHHHHhCCC
Q 003531 312 IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSM-TNSLISMYSKCKK 390 (812)
Q Consensus 312 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~ 390 (812)
..++.+..-+++|-++|+++.. +...+..+.+...+..|.++-.... +..++. -.+-..-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHh
Confidence 6666666667777777766642 1122222322223333333322211 111110 0111122233444
Q ss_pred hHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHh
Q 003531 391 VDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRS 470 (812)
Q Consensus 391 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 470 (812)
++.|...|-+... .---|.+-.....+.+|+.+++.++.+.. -..-|..+..-|+..|+++.|.++|...
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 4444444432110 01112333444555555555555544321 1223344444555555555555554322
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHH--------------------------HHHHHhCCC
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH--VTTWNVM--------------------------IDGYGTHGL 522 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~--~~~~~~l--------------------------i~~~~~~g~ 522 (812)
..++--|+||.+.|++++|.++-++...|. +.+|-+- |..|-++|.
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~ 865 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGL 865 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCc
Confidence 123334555555555555555555444332 2233333 334444444
Q ss_pred HHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDF 600 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 600 (812)
.++.+++.++ ..|+ ..|...+..-+...|++.+|...|-+.. -|.+-+++|-..+.+++|.++
T Consensus 866 ~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 866 DDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred chHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHH
Confidence 4444444332 2344 3466667777788888888887665433 366778889899999999988
Q ss_pred HHhCCCC-C---CHHHHHHHH------HHHHhcCCHHHHHHHHH------HHhc-----cCCCCccchhhHhhhhhhcCC
Q 003531 601 IQKMPIE-P---GITVFGAML------GACKIHKNVELGEKAAN------RLFE-----LDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 601 ~~~~~~~-p---d~~~~~~ll------~~~~~~g~~~~a~~~~~------~~~~-----~~p~~~~~~~~l~~~~~~~g~ 659 (812)
-+.-+-. . -...|.--+ ....+||-++.|+..+- -+++ .....++.+..++..+-..|+
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccc
Confidence 7665311 1 122342222 22345666665554322 2222 122346678888888999999
Q ss_pred chHHHHHHHHHHHc
Q 003531 660 WDKLAKVRTIMEKK 673 (812)
Q Consensus 660 ~~~a~~~~~~m~~~ 673 (812)
+++|.+-+-...+.
T Consensus 1011 ~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhhhHhhHHHhhc
Confidence 99998888777665
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1e-08 Score=115.73 Aligned_cols=211 Identities=12% Similarity=-0.009 Sum_probs=163.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCC
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA---------KCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGL 522 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 522 (812)
+++++|...++..++... .+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 356788888888887642 23455655655544 23458899999998873 467788889889999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDF 600 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 600 (812)
+++|+..|+++++ ..|+ ...+..+..++...|++++|...+++..+ +.|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5676 55778888899999999999999999884 4664 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 601 IQKM--PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 601 ~~~~--~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
++++ ...|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 4556777777889999999999999999899988888888888888888 5788877776653
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.5e-05 Score=84.05 Aligned_cols=572 Identities=13% Similarity=0.141 Sum_probs=316.0
Q ss_pred HHHHHhhcCCChhHHHHhhccCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC
Q 003531 77 KLVSLFCKYNSLSDAARVFEPIPD---KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE 153 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 153 (812)
.-.+.+...|++++|-++-...|+ ++..+-+.+=+.=...|...--+..|..+...| +.|..-=.-+.+.-...|+
T Consensus 365 ~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~R 443 (1666)
T KOG0985|consen 365 RRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGR 443 (1666)
T ss_pred HHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhH
Confidence 444556678999999999888877 566666666666667788888888888888887 4454433344444445555
Q ss_pred hHHHHHHHHHH-----HHhCCC---CC----hh------HHHHHHHHHHhcCChhHHHHHhccCC-CCCcchHHHHHHHH
Q 003531 154 IRRGKEIHGQL-----IVNGFS---LD----LF------AMTGVVNMYAKCGQIEEAYKMFDRMP-ERDLVSWNTIVAGF 214 (812)
Q Consensus 154 ~~~a~~l~~~~-----~~~g~~---~~----~~------~~~~Li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~ 214 (812)
.+.....+.+= .+.|-- .| .. +-+..+.+|+.+|+++.+.-...+.- .|| |-.+|...
T Consensus 444 kqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l 520 (1666)
T KOG0985|consen 444 KQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQL 520 (1666)
T ss_pred HHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHH
Confidence 54444433221 122311 11 01 11334455555555555554443332 133 45566666
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc----------------cCChHHH---HHHHHHHHHhCCC----
Q 003531 215 AQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN----------------VGSLRIG---KAVHGYAMRAGFD---- 271 (812)
Q Consensus 215 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----------------~~~~~~a---~~~~~~~~~~g~~---- 271 (812)
.+ -.++.+.++...|.+... ....+..+.+.+-. ....+.+ .++++.-...+..
T Consensus 521 ~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADA 597 (1666)
T KOG0985|consen 521 KR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADA 597 (1666)
T ss_pred Hc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHH
Confidence 65 577888888777776322 11222222222222 2222222 1222221111110
Q ss_pred ------CchhHHHHHHHHHHhCCChHHHHHHHhcCCC-CCchhHHHH-----HHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 272 ------SIVNVSTALVDMYAKCGRVETARLVFDGMKS-RNVVSWNSM-----IAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 272 ------~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
-...-+..+...|.|.|-...|.+.+..+.+ +-++..+.+ +-.|.-.-.++.+++.++.|+..+++-|
T Consensus 598 ILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 598 ILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred HHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 1111245666778889999999988888765 222222222 2345555678899999999999888888
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhc-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC-----
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQL-----------KLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG----- 403 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----- 403 (812)
..+...+..-|...-..+...++|+..... ++..|+.+.--.|.+-++.|++.+.+++-++-.-
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 777766666555554445555555544322 3556777777789999999999988887654321
Q ss_pred ----------C----------------CcccH------HHHHHHHHHcCChHHHHHHHHHHhhCCCC-----------CC
Q 003531 404 ----------K----------------TLVSW------NAMILGYAQNGRVNEALNYFCKMRSKNIK-----------PD 440 (812)
Q Consensus 404 ----------~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~ 440 (812)
. |.+.| --.|..|.+.=++.+.-.+...+.+-.+. -.
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~g 837 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRG 837 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhc
Confidence 0 11111 12344454443332222222222111100 01
Q ss_pred cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH--------------------------
Q 003531 441 SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGT-------------------------- 494 (812)
Q Consensus 441 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~-------------------------- 494 (812)
.+...-+..-+.+.+++..-...++..+..|. .|+.++|+|...|..+.+-.+
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceE
Confidence 11122233344445555555555666666663 466677777766554332111
Q ss_pred --------------------------HHHHHHhc--------C---------------------CCChHHHHHHHHHHHh
Q 003531 495 --------------------------ARALFDMM--------N---------------------ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 495 --------------------------A~~~~~~m--------~---------------------~~~~~~~~~li~~~~~ 519 (812)
|+-+.+++ . ..|+.-...-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 00000000 0 0122233344556666
Q ss_pred CCCHHHHHHHHHHHHhCCCCC--ChhH------------------HH---------HHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKP--NDIT------------------FL---------CAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p--~~~t------------------~~---------~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
.+-+.+-++++++.+-..-.- +... |. -+...+...+.++||..+|++.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-- 1074 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-- 1074 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh--
Confidence 666677777777665321000 0000 00 0122334455566666666532
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 571 DYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 571 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
.-+....+.|++ .-|.++.|.++-++.. .+.+|..+..|-.+.|.+.+|+.-|-+ .|||+.|...
T Consensus 1075 ----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eV 1139 (1666)
T KOG0985|consen 1075 ----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEV 1139 (1666)
T ss_pred ----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHH
Confidence 223333333433 4567777777777663 567899999999999999999988754 4688999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++..+.|.|++-.++....+++
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999988777765
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=5.8e-08 Score=94.13 Aligned_cols=287 Identities=12% Similarity=0.146 Sum_probs=167.9
Q ss_pred CChHHHHHHHHhcCCCCcccH---HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc------cHHhHHHHHhccccHHH
Q 003531 389 KKVDRAADIFSKLQGKTLVSW---NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF------TMVSVIPALAELSVIRY 459 (812)
Q Consensus 389 g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~~~ 459 (812)
.+.++|.++|-+|.+.|..++ -+|...|-+.|..++|+.+-+.+.++ ||.. ....+..-|...|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 455556666655555444433 23445555556666666555555442 2211 11122223344455555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------HHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 460 AKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHV--------TTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 460 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
|+.+|..+.+.+ ..-......|+..|-+..++++|.++-+++.+-+. ..|--+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555555554422 11222345566677777777777776665542221 134445555566677888888888
Q ss_pred HHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003531 532 KMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG 609 (812)
Q Consensus 532 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd 609 (812)
+..+ ..|+.+ .=..+.......|+++.|.+.++...+. +..--.++...|..+|...|+.++...++.++ ...++
T Consensus 205 kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8887 345433 3334556777888888888888877754 22224567777888888888888888888776 44455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhh--hhcCCchHHHHHHHHHHHcCCccCCccc
Q 003531 610 ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIY--AAASMWDKLAKVRTIMEKKGLQKTPGCS 682 (812)
Q Consensus 610 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~s 682 (812)
...-..+...-..+.-.+.|...+.+-+.-.|+--+.|-++.--. +..|++.+..-+.+.|....++..|.+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 555455555444444456677777777777786444444433322 3456688888788888776666656443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=9.4e-09 Score=106.13 Aligned_cols=189 Identities=16% Similarity=0.043 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 552 (812)
..|..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.|++.++ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 446666777888888888888888776 24567888888888889999999999988887 5675 55777777888
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ...|+...| .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 888999999988888774 3553222222223344567888888888654 223332222 2222334544333
Q ss_pred HHHHHHh-------ccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 631 KAANRLF-------ELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 631 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 4556667788999999999999999999998887653
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=4.9e-08 Score=97.58 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
..+..+...|...|++++|.+.|++..+.. |+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHH
Confidence 457777788888888888888888776532 32 223344555666
Q ss_pred HhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHH
Q 003531 487 AKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 562 (812)
...|++++|.+.|++.. ..+...+..+...|...|++++|.+.|++.+.....| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 66677777777766554 2344566667777777777778877777777643222 2335555666777788888888
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 563 HYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 563 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
..+++..+. .| +...+..++..+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888777643 33 4566777778888888888888887776 2233 4556666667777778888888877776655
Q ss_pred CC
Q 003531 640 DP 641 (812)
Q Consensus 640 ~p 641 (812)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=1e-05 Score=86.43 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=63.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HhcCCC---CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 003531 548 AISACSHSGLVEEGIHYFTSLK---------------KDYGIE---PVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPG 609 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~---p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd 609 (812)
.+.+++....|.+|.++-++.. +.-|-- -++.+ -+-+|++...|++++|++--++-..+|-
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpi 1323 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPI 1323 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHH
Confidence 3567777777777766544331 111110 12222 2457899999999999998888777776
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHhc-cCCCCccchh
Q 003531 610 ITVFGAMLGAC-KIHKNVELGEKAANRLFE-LDPDEGGYHV 648 (812)
Q Consensus 610 ~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~-~~p~~~~~~~ 648 (812)
..-|-++..+. ...|+..+++.++++-=. .+|.|..+|-
T Consensus 1324 l~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk 1364 (1636)
T KOG3616|consen 1324 LDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYK 1364 (1636)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHH
Confidence 66666666664 445788888888776533 4565555444
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=5.8e-08 Score=104.38 Aligned_cols=231 Identities=14% Similarity=0.169 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC----------Cc-ccHHHHHHHHHHcCChHHHHHHHHHHhhC---CCCCCcc
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGK----------TL-VSWNAMILGYAQNGRVNEALNYFCKMRSK---NIKPDSF 442 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ 442 (812)
+..-|..+|...|+++.|..+|+...+. .+ ...+.+...|...+++++|..+|+++..- ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h- 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH- 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 3344666677777777777666554321 11 11234555677777777777777776541 111111
Q ss_pred cHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCChH-HHH
Q 003531 443 TMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN----------ERHVT-TWN 511 (812)
Q Consensus 443 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----------~~~~~-~~~ 511 (812)
+.-..+++.|...|.+.|++++|...++... .+.+. -.+
T Consensus 280 ------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 ------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 1123455666677888888887777666544 12333 455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC---CCCCCh----hHHHHHHHHHHhcCcHHHHHHHHHHHHHhc-----CCCC-Ch
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEG---PTKPND----ITFLCAISACSHSGLVEEGIHYFTSLKKDY-----GIEP-VM 578 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~ 578 (812)
.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++..... +..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788889999999998877542 123333 478899999999999999999999887543 1123 35
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM--------PIEPGI-TVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
..++-|...|.+.++.++|.++|.+. +-.|+. .++..|...|...|++|.|+++.++++.
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67888999999999999999888775 344554 4899999999999999999999998874
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-06 Score=86.61 Aligned_cols=277 Identities=13% Similarity=0.006 Sum_probs=187.6
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc----HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 003531 405 TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT----MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMT 480 (812)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 480 (812)
|+.....+...+...|+.++|...|++.+. +.|+.++ |..+ +...|+.+....+...+.... ..+...|-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 666777888888888999999988888765 3344332 2222 245566666665555544321 01111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcC
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSG 556 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 556 (812)
.-........+++.|+.+-++..+- ++..+-.-...+.+.|++++|.-.|+..+. +.| +-..|..|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1122233456777888777776643 334444334567788889999888988887 565 4568889999998899
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHhhcC-CHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMV-DLLGRAG-RLNEAWDFIQKM-PIEPGIT-VFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g-~~~eA~~~~~~~-~~~pd~~-~~~~ll~~~~~~g~~~~a~~~ 632 (812)
...||...-+...+. +..++.+.+.++ +.+.-.- --|+|.+++++. .++|+-. ..+.+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999888877766643 333556665553 3333222 346788888877 6778744 556667778888999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLET 712 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 712 (812)
+++.+...|| ...+..|++++.....+++|...|...... +|+.+...+-+..
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHH
Confidence 9999988885 567888999999999999998888777654 6777777666777
Q ss_pred HHHHHH
Q 003531 713 LIDEIK 718 (812)
Q Consensus 713 l~~~m~ 718 (812)
|.++|+
T Consensus 514 lEK~~~ 519 (564)
T KOG1174|consen 514 LEKSDD 519 (564)
T ss_pred HHhccC
Confidence 776665
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=3.8e-06 Score=93.16 Aligned_cols=276 Identities=13% Similarity=0.003 Sum_probs=172.6
Q ss_pred HHHHHHHHhcC---CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHH
Q 003531 392 DRAADIFSKLQ---GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVI 468 (812)
Q Consensus 392 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 468 (812)
..|...+.... ..+...||.|.-. ..-|++.-|..-|-+-.... +....+|..+--.|....+++.|.+.+...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666543 3466788877655 55577777776666555432 3346677777767788889999998888776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----
Q 003531 469 RSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--------ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLE----- 535 (812)
Q Consensus 469 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 535 (812)
... +.+..-|-...-.....|+.-++..+|..-. -++..-|-.-..-..++|+.++-+...++.-.
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543 2233333333333345677777777776521 25556666666666777776665544443321
Q ss_pred ----CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 003531 536 ----GPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA----MVDLLGRAGRLNEAWDFIQKMPIE 607 (812)
Q Consensus 536 ----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~eA~~~~~~~~~~ 607 (812)
.|.+-+...|...+....+.+.+.+|.+...+...-....-+...|+. ....+...|.++.|..-+...+..
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 133445678888888889999988888877765533222334555553 445566678888887777666555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh---hHhhhhhhcCCchHHHHHHHHHH
Q 003531 608 PGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV---LLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 608 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
-|..+-.+-++. .-.|+++.+.+.|++++.+..++...-+ .++......+.-+.|....-+..
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 555555544444 4468899999999999987655444333 34444566677777776544443
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.3e-07 Score=95.81 Aligned_cols=198 Identities=8% Similarity=-0.051 Sum_probs=131.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHH
Q 003531 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--R-HVTTWNVMIDGYGTHGLGK 524 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 524 (812)
...+...|+.+.|...+...++.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+...+...|+++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 334444555555555555554433 23567788888999999999999999998863 3 4678888889999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH--HHHHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLN--EAWDFIQ 602 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~~~~ 602 (812)
+|++.|++..+ ..|+..........+...++.++|...|.+.... ..|+...+ .++..+ .|++. ++.+.+.
T Consensus 150 eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~ 222 (296)
T PRK11189 150 LAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLK 222 (296)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHH
Confidence 99999999998 5676542222233345678899999999765532 34433222 333333 44443 3343333
Q ss_pred hC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-CCccchhhHhhh
Q 003531 603 KM-P----IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDP-DEGGYHVLLANI 653 (812)
Q Consensus 603 ~~-~----~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~ 653 (812)
+. . ..| ....|..++..+.+.|++++|+..|+++++++| +..+.-..+..+
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22 1 122 235899999999999999999999999999997 444443334433
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=7.6e-06 Score=80.40 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcC-------ChHHHHHH
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNG-------RVNEALNY 428 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~ 428 (812)
-+.|.+++--+.+. .| ...-.|+--|.+.+++.+|..+.+++....+.-|-.-.-.++..| ...-|.+.
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 34555554444332 11 222345666889999999999988877655433322222223333 33445566
Q ss_pred HHHHhhCCCCCCccc-HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 003531 429 FCKMRSKNIKPDSFT-MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--- 504 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--- 504 (812)
|+-.-+++..-|... -.++.+++.-...++........+...-...|...+| +.++++..|+..+|+++|-.+..
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh
Confidence 654444544434222 2233333344445566665555555544444444443 56677777777777777776664
Q ss_pred CChHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH
Q 003531 505 RHVTTWNVM-IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL-CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY 581 (812)
Q Consensus 505 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 581 (812)
+|-.+|-++ ...|.++++++-|.+++-++.. +.+..... .+.+-|.+.+.+=-|-+.|+.+. .++|+++.|
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 344555543 3456677777777666544422 11222222 23345566666555555555554 245555444
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.7e-08 Score=95.27 Aligned_cols=227 Identities=13% Similarity=0.070 Sum_probs=139.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
+-|...|.+.|.+.+|.+.|+.-.++ .|-..||..+-.+|.+...++.|..++...++. ++-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46777888888888888888777665 344445555555555555555555555544433 122333333333344444
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 490 GAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
++.++|+++|++..+. .|+ .....++...|.-.++.+-|+.+|+++
T Consensus 304 -------------------------------~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 304 -------------------------------EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -------------------------------HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 4445555555554442 222 223333444444445555555555554
Q ss_pred HHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 569 KKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 569 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+- |+. +.+.|+.++-++.-.+++|-++.-|+++ ...|+ ..+|..|.....-.||+..|.+.|+-++..+|++
T Consensus 351 Lqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 432 321 3344444444444455555555555444 12343 4589888888888999999999999999999999
Q ss_pred ccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 644 GGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.+.++.|+-+-.+.|+.++|+.++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999887653
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.8e-05 Score=79.15 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=52.0
Q ss_pred HHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hc
Q 003531 111 KGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTG--VVNMYA--KC 186 (812)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 186 (812)
.-+..+|++++|+....++...+ +-|...+..-+-+..+.+.++.|..+.. ..+. ..+++. +=.+|| +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34455566666666666665543 2233334444444555555555553221 1111 011111 223333 34
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 187 GQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 187 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
+..++|...++....-+..+...-...+.+.|++++|+++|+.+.+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55555555555333222223333334445555555555555555444
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=2.1e-05 Score=83.76 Aligned_cols=442 Identities=13% Similarity=0.153 Sum_probs=253.9
Q ss_pred CcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHH
Q 003531 150 DVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDL 226 (812)
Q Consensus 150 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 226 (812)
..+.+..+.++.+.+++ +++....+.....-.+...|+.++|......-.. +..+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44556666666666665 3333333333333334556888888877766554 4567899888888888899999999
Q ss_pred HHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcC---CCC
Q 003531 227 VTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGM---KSR 303 (812)
Q Consensus 227 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~ 303 (812)
|+..... .||.... +.-|.-.-.+.|+++.....-... ...
T Consensus 98 y~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9988774 3444321 111111111222222222221111 123
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCChhhHHHHH------HHHhccCChHHHHHHHHHHhhcCCCCChh
Q 003531 304 NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQG-VEPTNVTIMEAL------HACADLGDLERGIFVHKLLDQLKLGTDVS 376 (812)
Q Consensus 304 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 376 (812)
....|..++-++.-.|+...|..++++..+.. -.|+...+.... ......|..+.+.+........ +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45678888888888888888888888887664 245555443322 2234556666666655443322 111222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCc--ccHHH-HHHHHHHcCChHHHH-HHHHHHhhCCCCCCcccHHhHHHHHh
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTL--VSWNA-MILGYAQNGRVNEAL-NYFCKMRSKNIKPDSFTMVSVIPALA 452 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~ 452 (812)
.--.-.+.+.+.+++++|..++..+..+++ +-|+- +..++.+-.+.-+++ .+|....+.-.+ ....-..=++...
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLN 299 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhC
Confidence 334456778899999999999999887655 33333 334443333444444 566555443111 1111111111122
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC--------------CCChHHHHH--
Q 003531 453 ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG---T-ARALFDMMN--------------ERHVTTWNV-- 512 (812)
Q Consensus 453 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~---~-A~~~~~~m~--------------~~~~~~~~~-- 512 (812)
...-.+....++....+.|+++ ++..+...|-.-...+ + +..+...+. .|....|+.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 2222333444555566666554 2333333333211111 1 111222111 245556665
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRA 591 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 591 (812)
++..|-..|+++.|+...+..+. -.|+.+ -|..=...+.+.|++++|..++++..+- -.||...-+--+.-..|+
T Consensus 377 laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHc
Confidence 67778899999999999999988 567644 5666678899999999999999988742 234665554567777899
Q ss_pred CCHHHHHHHHHhCC-CCCCH--------HHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 003531 592 GRLNEAWDFIQKMP-IEPGI--------TVFGAML--GACKIHKNVELGEKAANRLF 637 (812)
Q Consensus 592 g~~~eA~~~~~~~~-~~pd~--------~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 637 (812)
.+.++|.++..... ..-+. -.|-.+- .+|.++|++-+|++-|..+.
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 99999998876661 11121 2455443 35778888877777665543
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=9.8e-08 Score=92.40 Aligned_cols=240 Identities=12% Similarity=0.039 Sum_probs=174.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC--CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHh-HHHHHhcc
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQG--KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVS-VIPALAEL 454 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~ 454 (812)
-+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. ..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36788999999999999999988654 46678999999999999999999999988774 677777743 33445555
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
+..+.+.+++..+.+.. ..++.+..++..+|.-.++++-|+..|++++
T Consensus 304 ~~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HhHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 56666666665555432 2234444555666777788888888888888
Q ss_pred hCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 003531 535 EGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-I 610 (812)
Q Consensus 535 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~ 610 (812)
+.|+. +...|..+.-+|.-.+++|-++.-|.+.... --.| -.++|-.+.......|++.-|.+-|+-. ...|+ .
T Consensus 352 qmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 87753 5667777777888888888888877776643 3334 3567777887778888888888888766 33443 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhh
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
..++.|.-.-.+.|+++.|..++..+-...|+-.+....|+-+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 4777777667778888888888888888888766655555433
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=0.00014 Score=79.20 Aligned_cols=328 Identities=14% Similarity=0.138 Sum_probs=190.3
Q ss_pred CCCCCchHHH-HHHH--HhhcCCChhHHHHhhccCCCCChhHHHHHHHHHHhcCCchHHHHHHHHhHhC-C-------CC
Q 003531 67 GLCDQHLFQT-KLVS--LFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYD-D-------VA 135 (812)
Q Consensus 67 g~~~~~~~~~-~l~~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------~~ 135 (812)
|+..-+.... .+++ .|..-|+.+.|.+-...+.. ...|..|.+-|.+..+++-|.-.+..|... | .+
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3432344444 4543 57788999999888877654 457999999999999999888777777532 1 11
Q ss_pred CCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-cchHHHHHHHH
Q 003531 136 PVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD-LVSWNTIVAGF 214 (812)
Q Consensus 136 p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~ 214 (812)
-+..+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+-. ..||.--..-+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 111332333333457789999999999887764 34566778899999998865433211 12444444445
Q ss_pred HhCCChHHHHHHHHHH----------HHcCC---------CCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 003531 215 AQNGFAELALDLVTRM----------HEEGR---------RGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVN 275 (812)
Q Consensus 215 ~~~g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 275 (812)
-..++.+.|++.|++- ..... .-|...|.---.-+-..|+.+.|..++..+..
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 5567777777777642 11110 11121222222223344555555555554432
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 003531 276 VSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 276 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 355 (812)
|-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|...|.+.+ +|...|+.|-..+-
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 344555556667777777766543 455666677888888888888888887764 34555554433221
Q ss_pred ---------------hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--------------CCc
Q 003531 356 ---------------LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG--------------KTL 406 (812)
Q Consensus 356 ---------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------------~~~ 406 (812)
.-.|-+.|++ .|.. ..--+..|-|.|.+.+|+++--+-.+ .|+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1122222221 1111 12234567778887777765322111 133
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
...+--..-++.+.++++|..++-..+
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444555666777777777765544
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=6.4e-07 Score=91.09 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCc-hHHHHHHHH
Q 003531 593 RLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW-DKLAKVRTI 669 (812)
Q Consensus 593 ~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 669 (812)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 566666666666 23456667777777777888888888888888888888888888888888888888 556667776
Q ss_pred HHHc
Q 003531 670 MEKK 673 (812)
Q Consensus 670 m~~~ 673 (812)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6653
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.6e-07 Score=96.76 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh--------
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-------- 543 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------- 543 (812)
+...|--|...-...++-..|+..+.+.. ..|....-+|.-.|...|.-.+|++.++.-+... |...
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGEN 395 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCcc
Confidence 44455555555555566666666666555 2455666777777888888888888887765532 1100
Q ss_pred -HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003531 544 -TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGAC 620 (812)
Q Consensus 544 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~ 620 (812)
.+..- ........+....++|-.+....+..+|++++.+|+-+|--.|.+++|.+-|+.+ ..+| |...||-|+...
T Consensus 396 ~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 396 EDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred ccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 00000 1112223344556667777766676688889999999999999999999999998 6788 678999999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
....+.++|+.+|.+++++.|.-..+.+.|+-.|...|.++||.+.+-.+...
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988777653
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=0.00015 Score=77.57 Aligned_cols=441 Identities=9% Similarity=0.052 Sum_probs=273.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003531 217 NGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLV 296 (812)
Q Consensus 217 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 296 (812)
.+++...+.+.+..... ..-...|....--.+...|+.++|....+..++.. ..+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45667777777666652 22223344333334556788888888877777644 33456677777777778899999999
Q ss_pred HhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCC-
Q 003531 297 FDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKL- 371 (812)
Q Consensus 297 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~- 371 (812)
|..... .|...|..+.-.-++.++++.....-.+..+. .|. ...|.....+..-.|+...|..+.+...+...
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 987654 56778888777777888888888888877764 444 44677777788888999999999999888763
Q ss_pred CCChhHHHHHH------HHHHhCCChHHHHHHHHhcCCC--Ccc-cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc
Q 003531 372 GTDVSMTNSLI------SMYSKCKKVDRAADIFSKLQGK--TLV-SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF 442 (812)
Q Consensus 372 ~~~~~~~~~Li------~~y~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 442 (812)
.|+...+.-.. ....+.|..++|.+.+...... |-. .-.+....+.+.++.++|..++..++.. .||.+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443222 3346788888898887765543 222 2334566788999999999999999985 58888
Q ss_pred cHHhHHHHHh-c-cccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcCCCC-hHHHHHHHH
Q 003531 443 TMVSVIPALA-E-LSVIRYAKWIHALVIRSC---FEKNVFVMTALIDMYAKCGAVG-TARALFDMMNERH-VTTWNVMID 515 (812)
Q Consensus 443 t~~~ll~a~~-~-~~~~~~a~~i~~~~~~~~---~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~m~~~~-~~~~~~li~ 515 (812)
-|...+..+. . .+..+....++....+.- ..|-..-.+.+ ...++. ..-+++..+.++. +..+..+.+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-----NGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-----CcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 7777666555 2 233333335555443321 11111111111 011122 2223333333322 223344444
Q ss_pred HHHhCCCHHH----HHHHHHHHHhCC----------CCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-h
Q 003531 516 GYGTHGLGKA----AVELFNKMLEGP----------TKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-M 578 (812)
Q Consensus 516 ~~~~~g~~~~----A~~~~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 578 (812)
.|-.-...+- +..+..-+-..| -+|... |+..+...+-+.|+++.|..+++... +..|+ +
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTli 405 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLI 405 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHH
Confidence 4432221111 111111111111 144433 45567778899999999999999887 56775 5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-------cchh-
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM-PI-EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG-------GYHV- 648 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~- 648 (812)
+-|..=..++...|.+++|..++++. .+ .||..+-.--..-..+.++.++|.+++.+.-.-+-+-. -.+.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 67777778899999999999999988 32 34554433344445567889999998887765443110 1122
Q ss_pred -hHhhhhhhcCCchHHHHHHHHHH
Q 003531 649 -LLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 649 -~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
-=|.+|.++|+|.+|.+-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 23667888888888877555543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=2.7e-05 Score=76.38 Aligned_cols=306 Identities=11% Similarity=0.092 Sum_probs=178.9
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhHHHHH---HHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 003531 282 DMYAKCGRVETARLVFDGMKSRNVVSWNSMI---AAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLER 358 (812)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 358 (812)
..+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.-|...++. +||-..-.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR-------------- 109 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR-------------- 109 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH--------------
Confidence 3344556777777777777766666665553 3566667777776666666653 55532110
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCC
Q 003531 359 GIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIK 438 (812)
Q Consensus 359 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 438 (812)
+ --...+.|.|.++.|..-|+.+...++. -+....++.+.-..++-..+
T Consensus 110 --------i------------QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l---------- 158 (504)
T KOG0624|consen 110 --------I------------QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVL---------- 158 (504)
T ss_pred --------H------------HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHH----------
Confidence 0 0112356777777777777776654331 01111111111111111111
Q ss_pred CCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHH
Q 003531 439 PDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMID 515 (812)
Q Consensus 439 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~ 515 (812)
...+..+...|+...+......+++.. +.|...+..-..+|...|++..|..-+.... +.+....--+-.
T Consensus 159 ------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 159 ------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred ------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 112223344556666666666665543 4567777777888888999988876665544 456666666777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhH-H---HHH---------HHHHHhcCcHHHHHHHHHHHHHhcCCCCC-----
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPNDIT-F---LCA---------ISACSHSGLVEEGIHYFTSLKKDYGIEPV----- 577 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 577 (812)
.+...|+.+.++...++-++ +.||.-. | ..| +......+.|-++.+..+...+. .|.
T Consensus 232 L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir 306 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIR 306 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCccccee
Confidence 78888999999998888888 6787542 1 111 11223455555666555555432 332
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
...+..+-.++...|++-||++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 223334445566677777777777665 55664 5566666667777777778888888888877766443
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=1.4e-07 Score=85.57 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
.+|++.++ +.|+. +.....++...|++++|...|+.... +.| +...|..++.++.+.|++++|...++++ .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 55654 44566777888888888888888773 456 6788888888888999999999988887 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh
Q 003531 606 IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA 655 (812)
Q Consensus 606 ~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 655 (812)
..| +...|..++.++...|+.++|+..+++++++.|+++..+..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 556 66788888888889999999999999999999999888887776654
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.4e-06 Score=85.46 Aligned_cols=213 Identities=14% Similarity=0.069 Sum_probs=110.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH----------HHHHHHHH
Q 003531 447 VIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVT----------TWNVMIDG 516 (812)
Q Consensus 447 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~----------~~~~li~~ 516 (812)
+.++..+..+++.+.+-+...++.. .++.-++....+|...|...+....-+...+..-. ....+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3444444455555555555555544 44444555555666666665555544443321111 12223345
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHH
Q 003531 517 YGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM-DHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~ 595 (812)
|.+.++++.|+..|++.+.....||.. .+....+++....+... -+.|.. .-...=+..+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 556667777777777765544343321 11222233333222221 233321 11111245555666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 596 EAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 596 eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+....+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666665 3345 45555555555666666666666666666666666666666666666666666666666655543
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.68 E-value=9.7e-06 Score=88.60 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=107.2
Q ss_pred HhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCccc---HHHHHHHHHHc-----CC
Q 003531 350 CADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVS---WNAMILGYAQN-----GR 421 (812)
Q Consensus 350 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~-----g~ 421 (812)
+...|++++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+..+|+.. |..+..+.... ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 34556666666665443322 22234444555566666666666666666666544432 22233332111 13
Q ss_pred hHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003531 422 VNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI-RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFD 500 (812)
Q Consensus 422 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 500 (812)
.+...++|+++...- |.......+.-.+.....+ ..+..+....++.|+++ +++.|-..|....+.+-..+++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 445555666555432 3322222221111111111 22333334444445332 34444444544333333333333
Q ss_pred hcC------------------CCChHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHH
Q 003531 501 MMN------------------ERHVTTW--NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVE 559 (812)
Q Consensus 501 ~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 559 (812)
... .|....| .-+...|...|++++|+++.++.++ ..|+ ...|..-...+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 221 0112222 2234444455555555555555555 3344 224444455555555555
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 560 EGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
+|.+.++... .+++ |...-+-.+..+.|+|++++|.+.+...
T Consensus 246 ~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 246 EAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 5555555444 2333 4444444444555555555555554443
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=8.9e-05 Score=80.73 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 003531 483 IDMYAKCGAVGTARALFDMMN--------------ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCA 548 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 548 (812)
+..|-|.|.+.+|+++--+-. ..|+...+--..-+..+.++++|..++-...+ |...
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~A 1112 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGA 1112 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHH
Confidence 456888888888876532222 13555566666667788888888888776654 3445
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003531 549 ISACSHSGLVEEGIHYFTSLKKDYGIEPV----MDHYGAMVDLLGRAGRLNEAWDFIQKMP 605 (812)
Q Consensus 549 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~ 605 (812)
+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.++|.+.-|-+-|.+++
T Consensus 1113 lqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1113 LQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 55554433 22223333333221112222 3556677888888888888888887774
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=6.8e-06 Score=76.57 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 552 (812)
.++..+...|.+.|..+.|.+.|++.. ..+-...|....-+|..|++++|...|++.+..-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344555555666666666666665544 23344455555555666666666666666665322222 34555555555
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
.+.|+.+.|.++|++..+ +.| .....-.|.+...+.|++-+|..+++.. ...+...+..-.+..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 666666666666666553 334 3445555666666666666666666655 2234444444444445556666666
Q ss_pred HHHHHHHhccCCCCc
Q 003531 630 EKAANRLFELDPDEG 644 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (812)
-+.-.++...-|...
T Consensus 227 ~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 227 QRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhCCCcH
Confidence 666666666666443
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=2e-05 Score=86.28 Aligned_cols=283 Identities=13% Similarity=0.095 Sum_probs=186.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC--
Q 003531 312 IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT-IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC-- 388 (812)
Q Consensus 312 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-- 388 (812)
...+...|++++|++.+.+-.. ..+|..+ +......+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 3456788999999999977544 3556554 44556678899999999999999999973 3555566666665222
Q ss_pred ---CChHHHHHHHHhcCCCCccc--HHHHHHHHHHcCChH-HHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHH
Q 003531 389 ---KKVDRAADIFSKLQGKTLVS--WNAMILGYAQNGRVN-EALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKW 462 (812)
Q Consensus 389 ---g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 462 (812)
.+.+...++++++....+.+ ...+.-.+.....+. .+..++..+...|+++ +|+.+-..|...........
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677788888876654322 222222222222333 4555667777888654 56666666665555555555
Q ss_pred HHHHHHHh----C----------CCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCH
Q 003531 463 IHALVIRS----C----------FEKNVF--VMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLG 523 (812)
Q Consensus 463 i~~~~~~~----~----------~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~ 523 (812)
++...... + -+|+.. ++.-+...|-..|++++|+++.++.. .|+ +..|..-...|-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55544332 1 123443 44556778889999999999999877 354 55788888999999999
Q ss_pred HHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH--------HHHHHHHhhcCCH
Q 003531 524 KAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY--------GAMVDLLGRAGRL 594 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--------~~li~~~~~~g~~ 594 (812)
.+|.+.+++.... .+ |...=+-....+.+.|++++|.+.+....+. +..|....+ .-.+.+|.|.|++
T Consensus 245 ~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 245 KEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999884 44 4555556677789999999999999887755 434421111 1224555566666
Q ss_pred HHHHHHHHh
Q 003531 595 NEAWDFIQK 603 (812)
Q Consensus 595 ~eA~~~~~~ 603 (812)
..|++.|..
T Consensus 322 ~~ALk~~~~ 330 (517)
T PF12569_consen 322 GLALKRFHA 330 (517)
T ss_pred HHHHHHHHH
Confidence 666655544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.00076 Score=82.26 Aligned_cols=362 Identities=10% Similarity=-0.019 Sum_probs=158.2
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchh--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 003531 281 VDMYAKCGRVETARLVFDGMKSRNVVS--WNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLER 358 (812)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 358 (812)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344556677777766666555432211 111122344556666666665554211111111112222233345566677
Q ss_pred HHHHHHHHhhcCCC------CC--hhHHHHHHHHHHhCCChHHHHHHHHhcCC----CCc----ccHHHHHHHHHHcCCh
Q 003531 359 GIFVHKLLDQLKLG------TD--VSMTNSLISMYSKCKKVDRAADIFSKLQG----KTL----VSWNAMILGYAQNGRV 422 (812)
Q Consensus 359 a~~i~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 422 (812)
+...+..+...--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 66666555432100 00 11111222334455566666555554322 111 1223333444455555
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF-EKNVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
++|...+.+.....-. .|. .........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~~~~~-------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQMARQ-------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHHHHhh-------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554431000 000 00111223333444455555555554443
Q ss_pred cCC-------C----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCC--hhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 502 MNE-------R----HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP--TKPN--DITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 502 m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
... + ....+..+...+...|++++|...+++..... ..+. ...+..+.......|+.++|.+.+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 321 0 01123333344445566666666665554321 1111 1223334444555666666666665
Q ss_pred HHHHhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 567 SLKKDYGIEPVMDHY-----GAMVDLLGRAGRLNEAWDFIQKMPI-E-PGI----TVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 567 ~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~-~-pd~----~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
..............+ ......+...|+.++|.+++..... . ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554321111000000 0111333445666666666655411 0 111 1123444455566667777776666
Q ss_pred HhccCC------CCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 636 LFELDP------DEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 636 ~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++... +...++..++.+|...|+.++|...+.+..+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 665321 11234556666677777777777666666553
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=2.9e-05 Score=83.32 Aligned_cols=293 Identities=9% Similarity=-0.066 Sum_probs=169.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCccc---HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc-cHHh---H
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQG---KTLVS---WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF-TMVS---V 447 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---l 447 (812)
+..+...|...|+.+.+.+.+..... .+... .......+...|++++|.+++++..+. .|+.. .+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 34444455555666665554444322 12211 222233456678888888888887764 34332 2221 1
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHH
Q 003531 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGK 524 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 524 (812)
.......+..+.+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1111123344444444433 1111122333445566678889999999999988773 44667788888899999999
Q ss_pred HHHHHHHHHHhCCC-CCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 003531 525 AAVELFNKMLEGPT-KPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY-G--AMVDLLGRAGRLNEAW 598 (812)
Q Consensus 525 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~ 598 (812)
+|...+++.+.... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998887421 1222 235567778888999999999998875321111111111 1 2333334445333333
Q ss_pred HH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---------CCccchhhHhhhhhhcCCchH
Q 003531 599 DF---IQKM-PIEPG---ITVFGAMLGACKIHKNVELGEKAANRLFELDP---------DEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 599 ~~---~~~~-~~~pd---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~ 662 (812)
++ .... +..|+ .........++...|+.+.|...++.+....- .........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1111 11111 22223455667788899999999988765221 124556778888999999999
Q ss_pred HHHHHHHHHHc
Q 003531 663 LAKVRTIMEKK 673 (812)
Q Consensus 663 a~~~~~~m~~~ 673 (812)
|.+.+......
T Consensus 326 A~~~L~~al~~ 336 (355)
T cd05804 326 ALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=1.8e-06 Score=86.40 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh----H
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-V---TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI----T 544 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 544 (812)
....+..+...|.+.|++++|...|+++.+ |+ . ..|..+...|.+.|++++|+..++++++ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555566666667777777777766552 22 1 3556666666777777777777777766 334322 3
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003531 545 FLCAISACSHS--------GLVEEGIHYFTSLKKDYGIEPVM-DHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGA 615 (812)
Q Consensus 545 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ 615 (812)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHH
Confidence 44444444433 5666666666666643 3321 122111111 0010000 0 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888899999999999999987765 468889999999999999999998887764
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.4e-05 Score=79.17 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=118.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcH
Q 003531 482 LIDMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLV 558 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 558 (812)
+...|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|... -...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 44578888999999999987652 22111 2233445666666555544 455432 233346778899999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 559 EEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT-VFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 559 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~-~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
..|+..|.++++. .| |...|+.-.-+|.+.|.+.+|++-.+.. .+.|+.. .|.--+.++....+++.|...|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 46 7899999999999999999999877666 5566543 554455666777899999999999
Q ss_pred HhccCCCCccchhhHhhhhhhc
Q 003531 636 LFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.++.+|++..+...+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999888777777666543
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=4.6e-05 Score=84.87 Aligned_cols=450 Identities=14% Similarity=0.070 Sum_probs=219.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcchHHhHHHH
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR-RGDFITIVSILPA 248 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a 248 (812)
...|..|-..|...-+...|.+.|+..-+ .|..+|-.....|+...+++.|..+.-.--+... ..-...+...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45678888888877788888888887665 4556788888888888888888888332222110 0000111111112
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHH---HHHHHhCCChhHHH
Q 003531 249 VANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSM---IAAYVEGGNPEEAM 325 (812)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 325 (812)
+-..++...+..-++...+.. +.|...|..|..+|..+|+...|.++|++...-++.+|-.- ...-+.+|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 233344444444444444332 33566677777777777777777777766655333332221 12234566677776
Q ss_pred HHHHHHHHcC------CCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 003531 326 RIFQKMLDQG------VEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 326 ~l~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
..+....... ..--..++..+...+...|-...+..++ +++.+.|.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~----------------------------eksie~f~ 702 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF----------------------------EKSIESFI 702 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH----------------------------HHHHHHHH
Confidence 6666654320 0000001111111111111111111111 11111111
Q ss_pred hcCC----CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH---H---HHHHHHHHHHH
Q 003531 400 KLQG----KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI---R---YAKWIHALVIR 469 (812)
Q Consensus 400 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~ 469 (812)
-... .+...|-.+- +|..+|-+..- . .|+......+..-....+.. + .|-+.+ ...
T Consensus 703 ~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~h 768 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAH 768 (1238)
T ss_pred HHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHH
Confidence 1110 1111222211 22223322220 0 11111111111101111111 1 000100 001
Q ss_pred hCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 003531 470 SCFEKNVFVMTALIDMYAK----CG----AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPT 538 (812)
Q Consensus 470 ~~~~~~~~~~~~li~~y~k----~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (812)
..+..+...|..|+.-|.+ +| +...|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-+.. .
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-e 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-E 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-c
Confidence 1111123333333333322 22 2234555555444 4667778776555 5556666666666555553 2
Q ss_pred CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH
Q 003531 539 KPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-------PIEPGI 610 (812)
Q Consensus 539 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~pd~ 610 (812)
+-+..+|..+.-.|....+++.|.+.|...+ .+.| +...|--........|+.-++..+|..- +-.|+.
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 3346677777777777888888888887665 4566 5555554444555677777777776542 233455
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEK----------AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
..|..-.--..++|+.+.-+. +.++.++-.|++..+|...+...-+.+.+.+|.+...+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555544444555565554333 334445567777777777777777777777776665544
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=5.1e-07 Score=80.18 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=103.6
Q ss_pred CCC-C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 573 GIE-P-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 573 ~~~-p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
++. + +.+..-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+|+.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 4 4566667788888999999999999988 5667 6779999999999999999999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIK 718 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 718 (812)
+++.+|...|+.++|++-|+...... ..+|+..+|.++.+.....+.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887641 136777777777776665554
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.7e-06 Score=83.06 Aligned_cols=145 Identities=9% Similarity=0.087 Sum_probs=108.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAG 592 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 592 (812)
+..|...|+++......+++.. |. . .+...++.+++...++...+ ..| +...|..|+..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3456777777665444332221 11 0 11225566777777766664 345 7888999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 593 RLNEAWDFIQKM-PIEP-GITVFGAMLGA-CKIHKN--VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 593 ~~~eA~~~~~~~-~~~p-d~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
++++|...+++. .+.| +..+|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+...|++++|...|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888 5666 56678777776 466676 599999999999999999999999999999999999999999
Q ss_pred HHHHHc
Q 003531 668 TIMEKK 673 (812)
Q Consensus 668 ~~m~~~ 673 (812)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 999875
No 105
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=8.1e-06 Score=84.18 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCH--HHHHHHHHHHHhCCCCC-ChhHHHHHHH
Q 003531 478 VMTALIDMYAKCG-AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLG--KAAVELFNKMLEGPTKP-NDITFLCAIS 550 (812)
Q Consensus 478 ~~~~li~~y~k~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 550 (812)
+|+....++.+.| .+++++..++++. .++..+|+-....+.+.|+. ++++.+++++++ ..| |..+|.....
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3333334444455 5688888887766 34556777665555566653 678888888888 455 4668888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRA---GRL----NEAWDFIQKM-PIEP-GITVFGAMLGAC 620 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~~~~~~-~~~p-d~~~~~~ll~~~ 620 (812)
++.+.|+++++++.++++++. .| +...|+....++.+. |.+ +++.++.+++ ...| |...|+.+.+.+
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 888889999999999998854 44 566777766666554 322 4677777554 6677 677999999998
Q ss_pred Hhc----CCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC------------------CchHHHHHHHHHH
Q 003531 621 KIH----KNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS------------------MWDKLAKVRTIME 671 (812)
Q Consensus 621 ~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 671 (812)
... ++..+|...+.+++..+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 228 KDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 874 44567999999999999999999999999998643 2356777777773
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=1.3e-06 Score=79.32 Aligned_cols=98 Identities=11% Similarity=-0.069 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 574 IEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 574 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
+.|+ .+..++..+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4565 3556788999999999999999998 5566 6779999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHc
Q 003531 652 NIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 652 ~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++...|++++|...++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=5.1e-05 Score=73.06 Aligned_cols=370 Identities=12% Similarity=0.066 Sum_probs=195.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC--CCchhHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--h
Q 003531 277 STALVDMYAKCGRVETARLVFDGMKS--RNVVSWNS-MIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHAC--A 351 (812)
Q Consensus 277 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~ 351 (812)
.+.|..+|....++..|-..++++.. |...-|.. -...+.+.+.+..|+++...|.+. |+...-..-+.+. -
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 34455555566666666666655543 22222221 134455666777777777666532 2221111112221 2
Q ss_pred ccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcccHHHHHHHHHHcCChHHHHH
Q 003531 352 DLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK----TLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
..+++..+..+.++....| +..+.+-..-...+.|+.+.|.+-|+...+- ....||.-+..| +.|+++.|++
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHH
Confidence 3455555555555443222 2333333333455778888888888776542 335666554443 5577888888
Q ss_pred HHHHHhhCCCCCCccc----HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003531 428 YFCKMRSKNIKPDSFT----MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 503 (812)
+..+++++|++-.+.. -+-.+. ...+.....++...+ +..+|.-...+.+.|+.+.|.+.+..|+
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 8888888776532111 000000 000111111111111 1223444455778999999999999998
Q ss_pred C-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC-CC
Q 003531 504 E-----RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE-PV 577 (812)
Q Consensus 504 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~ 577 (812)
. -|++|...+.-.- ..+++.+..+-+.-+++.+. -...||..++-.||+..-++-|-.++.+-... -.. .+
T Consensus 269 PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~ 345 (459)
T KOG4340|consen 269 PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLT 345 (459)
T ss_pred CcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhh
Confidence 3 4677766554322 24556666666666666422 24679999999999999999888876532110 000 12
Q ss_pred hhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHH-HHH-HHhcCC----HHHHHHHHHHHhccCCCCccchhhH
Q 003531 578 MDHYGAMVDLLGRA-GRLNEAWDFIQKMPIEPGITVFGAM-LGA-CKIHKN----VELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 578 ~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~pd~~~~~~l-l~~-~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
...|+ |++++.-+ -..++|++-+..+...- ..-.+.+ +.. -.++.+ ...+++-+++.+++- -......
T Consensus 346 ~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~ 420 (459)
T KOG4340|consen 346 PYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQ 420 (459)
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 23333 34555443 36777776665541000 0001111 111 111222 223444455555432 1245677
Q ss_pred hhhhhhcCCchHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+++|++..++.-+.++|+.-.+
T Consensus 421 AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 421 AKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhhccccccHHHHHHHHHHHh
Confidence 8999999999999999876554
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=1.1e-05 Score=92.47 Aligned_cols=200 Identities=10% Similarity=0.109 Sum_probs=169.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhH
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNE--------RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT 544 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 544 (812)
+.+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777778888889999999999998762 23458999999888889888899999999883 223456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG---ITVFGAMLGAC 620 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd---~~~~~~ll~~~ 620 (812)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.+...-+.|.++++++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 56778999999999999999999999887 33342 33556666667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
.++|+.+.|..+|+..+.-.|.-...|..++++-.+.|..+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999988663
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=8.8e-06 Score=78.12 Aligned_cols=154 Identities=9% Similarity=0.152 Sum_probs=119.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHH
Q 003531 483 IDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 562 (812)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++.++.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888887765554433221 01223677788888898888842 335668888999999999999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003531 563 HYFTSLKKDYGIEP-VMDHYGAMVDLL-GRAGR--LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRL 636 (812)
Q Consensus 563 ~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~ 636 (812)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 566 788888888874 67787 59999999998 5667 5678888889999999999999999999
Q ss_pred hccCCCCccchh
Q 003531 637 FELDPDEGGYHV 648 (812)
Q Consensus 637 ~~~~p~~~~~~~ 648 (812)
++++|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999986655443
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.48 E-value=0.00041 Score=74.38 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 412 MILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
+...+...|++++|.+.+++..+. .|+. ...+..+...|...|+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~i~~~~g~ 163 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALEL--NPDD----------------------------------AWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCC----------------------------------cHHHHHHHHHHHHcCC
Confidence 344566667777777777766653 2332 2334455555666666
Q ss_pred HHHHHHHHHhcCC-----CCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHH-H--HHHHHHHhcCcHHH
Q 003531 492 VGTARALFDMMNE-----RHV--TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITF-L--CAISACSHSGLVEE 560 (812)
Q Consensus 492 ~~~A~~~~~~m~~-----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~ 560 (812)
+++|...+++... ++. ..|..+...+...|++++|+.++++.......+. .... . .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666665542 121 2344566667777777777777777654221111 1111 1 22223333343332
Q ss_pred HHHH--HHHHHHhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCH
Q 003531 561 GIHY--FTSLKKDYGI-EPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP--IEP---G------ITVFGAMLGACKIHKNV 626 (812)
Q Consensus 561 a~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p---d------~~~~~~ll~~~~~~g~~ 626 (812)
+.++ .........- ..........+.++...|+.++|..+++.+. ... . ..+.-....++...|+.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111111000 0011122245566677888888888887761 111 1 11222222346678899
Q ss_pred HHHHHHHHHHhccC
Q 003531 627 ELGEKAANRLFELD 640 (812)
Q Consensus 627 ~~a~~~~~~~~~~~ 640 (812)
+.|...+..++.+-
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887654
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=1.9e-07 Score=60.21 Aligned_cols=33 Identities=30% Similarity=0.712 Sum_probs=25.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 003531 168 GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP 200 (812)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 200 (812)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888777774
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=3.1e-06 Score=76.39 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=81.9
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 574 IEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 574 ~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
..| +......++..+.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 455 4556667777888888888888888776 4445 567888888888888999999999999999999888899999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998887765
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0041 Score=65.46 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK-NVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
+.....+++....-..--..+|...++...+...+..|+.+|..+.+.+..+ ++.++++++.-|+. ++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 3444455554442211123456666666666677777777777777766555 67777777766663 566677777765
Q ss_pred cCC--CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC--C
Q 003531 502 MNE--RH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYG--I 574 (812)
Q Consensus 502 m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 574 (812)
-.+ +| ..--+..+.-+...|+-..|..+|++.+..++.||. ..|..+|.--+.-|++....++-+++...+. .
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~q 506 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQ 506 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhh
Confidence 442 23 333344555556666666777777777766555553 3566666666666776666666665554433 3
Q ss_pred CCChhHHHHHHHHHhhcCCH
Q 003531 575 EPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 575 ~p~~~~~~~li~~~~~~g~~ 594 (812)
.|...+-..+++.|.-.+..
T Consensus 507 e~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 507 EYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cCCCChHHHHHHHHhhcccc
Confidence 33333334445555444433
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.42 E-value=1.6e-05 Score=90.36 Aligned_cols=137 Identities=6% Similarity=-0.012 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYG 582 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 582 (812)
.++..+-.|.....+.|.+++|..+++...+ +.||.. .+..+..++.+.+.+++|...+++... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 4577888888888999999999999999998 788754 677788899999999999998888874 467 678888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 583 AMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 583 ~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+..++.+.|++++|.++|+++ ...|| ...|.++..++...|+.++|..+|+++++...+....
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8999999999999999999998 33454 6788999999999999999999999999876544433
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=3.7e-07 Score=58.89 Aligned_cols=33 Identities=42% Similarity=0.603 Sum_probs=25.7
Q ss_pred CCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003531 269 GFDSIVNVSTALVDMYAKCGRVETARLVFDGMK 301 (812)
Q Consensus 269 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 301 (812)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777888888888888888888887774
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=1.6e-05 Score=80.97 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhcccc
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSV 456 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 456 (812)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa-------- 170 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA-------- 170 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH--------
Confidence 3333445677788888888887664 44556666778888899999999999888764 222 3332222
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (812)
.+.+..+.-.+.+.+|.-+|+++.+ +++.+.|.+..++.+.|++++|.+++++.
T Consensus 171 -----------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 171 -----------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp -----------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred -----------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2233333333456777777777653 45566677777777778888887777777
Q ss_pred HhCCCCC-ChhHHHHHHHHHHhcCcH-HHHHHHHHHHHHh
Q 003531 534 LEGPTKP-NDITFLCAISACSHSGLV-EEGIHYFTSLKKD 571 (812)
Q Consensus 534 ~~~g~~p-~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 571 (812)
... .| |..|...++.+....|+. +.+.+++..++..
T Consensus 228 l~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 653 34 355666677677777776 5566677776654
No 117
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=4.2e-05 Score=78.95 Aligned_cols=185 Identities=8% Similarity=0.038 Sum_probs=139.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCc
Q 003531 483 IDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHG-LGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGL 557 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 557 (812)
-..+.+.++.++|..+.+++.+ .+...|+..-..+...| ++++++..++++++. .|+ ..+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 3345566788899999888773 34557777766777777 679999999999984 454 4456666555666665
Q ss_pred H--HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----
Q 003531 558 V--EEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIH---KN---- 625 (812)
Q Consensus 558 ~--~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~---- 625 (812)
. +++..+++.+.+ +.| +..+|+...-++.+.|++++|++.++++ ...| |...|+......... |.
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3 677888888874 566 7888999999999999999999999998 5555 677898888776654 22
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhc----CCchHHHHHHHHHHH
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAA----SMWDKLAKVRTIMEK 672 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 672 (812)
.+.++....++++++|+|..++..++.++... ++..+|.+......+
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 25678888899999999999999999999873 445567666655443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=2.2e-05 Score=78.63 Aligned_cols=180 Identities=13% Similarity=0.009 Sum_probs=126.8
Q ss_pred cccHHhHHHHHhccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHH
Q 003531 441 SFTMVSVIPALAELSVIRYAKWIHALVIRSCFE-K-NVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-V---TTWNV 512 (812)
Q Consensus 441 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~---~~~~~ 512 (812)
...+......+...|+++.|...++.+++.... + ....+..+...|.+.|++++|...|+++.+ |+ . ..|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445666677788999999999999998875432 1 224667788999999999999999999873 32 2 24566
Q ss_pred HHHHHHhC--------CCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH
Q 003531 513 MIDGYGTH--------GLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA 583 (812)
Q Consensus 513 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 583 (812)
+..++.+. |++++|++.|+++++ ..|+.. ....+..... ... .. ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 789999999999998 456543 2222211100 000 00 011235
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM----PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
+.+.|.+.|++++|...+++. |-.| ....|..++.++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677888999999999988887 3233 346888999999999999999998888776555
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=2.3e-05 Score=74.88 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG 589 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 589 (812)
..+-..+...|+.+.++.+..+... ..| |.......+....+.|++.+|...|++... .-.+|...|+.++-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 4455566666777776666665443 222 233344466667777777777777777663 23347777777777777
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 590 RAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
+.|++++|..-|.+. .+.| ++.+.+.|.-.+...|+.+.|+.++.++....+.|+.+-..|+-+....|++++|+.+-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777666 4455 56677777777777777777777777777777777777777777777777777776654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=9.9e-06 Score=87.40 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC 552 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 552 (812)
+|--..-..+.+.+.++|-...|..+|+++ ..|--.|..|...|+..+|..+..+-++ -+||+..|..++...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333334444555555556666666555543 3455555555555555555555555554 345555555555554
Q ss_pred HhcCcHHHHHHHHHHHHHh-------------------------cCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 553 SHSGLVEEGIHYFTSLKKD-------------------------YGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~-------------------------~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
...--+++|+++++..... ..+.| ...+|-.++.+..+.++++.|.+.|... .
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 4444455555544433211 12333 3444555555555555555555555554 4
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 606 IEPGI-TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 606 ~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
..||. ..||.+-.+|.++|+..+|...++++++.+-++..++....-+..+.|.|++|.+.+.++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 45543 35666666666666666666666666655554455555444455555666666665555544
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=1.5e-05 Score=86.04 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=175.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
-.+...+...|-...|+.+|++.. .+..++-.|...|+..+|..+....++ -+|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 346778889999999999998764 477788888999999999998887776 478999999999998888
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 490 GAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
.-+++|.++++....+--..|+-+ ...+++++++.+.|+.-.+ +.| ...||..+..+..+.++++.|.+.|...
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 889999999987754422222222 2347999999999998887 445 4668999998999999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE-PGITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
. .+.| +...||.+-.+|.+.|+..+|...++++ +.. -+..+|...+-....-|+.++|++++.+++++.-
T Consensus 546 v---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 546 V---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred h---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 4678 6899999999999999999999999998 332 2455888888888899999999999999988654
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=2.2e-05 Score=74.89 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=112.3
Q ss_pred CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003531 538 TKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGA 615 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ 615 (812)
..|+......+-.++...|+-+.+..+....... ...|......++....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454322266677788888888888877765422 2236667777999999999999999999998 44558899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..+|-+.|+++.|...+.+++++.|+++.++..|+..|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999887765
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.6e-05 Score=83.79 Aligned_cols=219 Identities=16% Similarity=0.139 Sum_probs=151.8
Q ss_pred HHhCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHH
Q 003531 385 YSKCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAK 461 (812)
Q Consensus 385 y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 461 (812)
+.+.|++.+|.-.|+....+|+ ..|--|...-..+++-..|+..+++..+ +.|+..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~Nl------------------- 353 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNL------------------- 353 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccH-------------------
Confidence 5677888888888887776554 5788888888888888888888888776 445522
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHH---------HHHHhCCCHHHHHHHHH
Q 003531 462 WIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH-VTTWNVMI---------DGYGTHGLGKAAVELFN 531 (812)
Q Consensus 462 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~ 531 (812)
.+.-+|.-.|...|.-.+|.+.|+.-.... ...|..-. ..+.......+..++|-
T Consensus 354 ---------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL 418 (579)
T KOG1125|consen 354 ---------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL 418 (579)
T ss_pred ---------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH
Confidence 222333333444444444444444332000 00000000 11112223344555665
Q ss_pred HHHh-CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003531 532 KMLE-GPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP 608 (812)
Q Consensus 532 ~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p 608 (812)
++.. .+-++|......|.-.|--.|.+++|+..|+.... ++| |...||-|+..++...+.+||.+.++++ .++|
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 5544 44346666777777778889999999999999884 578 7889999999999999999999999998 8899
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 609 GIT-VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 609 d~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
+-+ ++..|+-+|...|.+++|.+.+-.++.+.+.
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 755 8899999999999999999999999988764
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00048 Score=66.54 Aligned_cols=237 Identities=10% Similarity=-0.012 Sum_probs=129.1
Q ss_pred hCCChHHHHHHHhcCCC-CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 003531 286 KCGRVETARLVFDGMKS-RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHK 364 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 364 (812)
..+++..++.+.++.+. .+..+-+...-...+.|++++|++-|+...+-+---....|+..+.. .+.++...|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 34677777777777773 44455555555556778888888888877765333334556555543 35577778888888
Q ss_pred HHhhcCCCCChhHH----HHHHHHHHhCCCh-HHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhC-CCC
Q 003531 365 LLDQLKLGTDVSMT----NSLISMYSKCKKV-DRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSK-NIK 438 (812)
Q Consensus 365 ~~~~~g~~~~~~~~----~~Li~~y~~~g~~-~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 438 (812)
+++++|+...+... +-.++.-. .|+. ..+..- =+..+|.-...+-+.|+++.|.+.+.+|.-+ .-.
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 88777754322211 00000000 0000 000000 0123444445566778888888888777532 234
Q ss_pred CCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChHHHHHH
Q 003531 439 PDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER-----HVTTWNVM 513 (812)
Q Consensus 439 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----~~~~~~~l 513 (812)
.|++|...+.-. -..+++..+.+-+..+...+. -...++..++-.|+|..-++-|-.++.+-..- +...|+.|
T Consensus 275 lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 275 LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred CCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH
Confidence 566776544221 122345555555555555543 33456667777899988888888888765432 33344433
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 003531 514 IDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m 533 (812)
=..-...-.+++|++-++.+
T Consensus 353 daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 22222344566666555443
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=0.0013 Score=80.26 Aligned_cols=257 Identities=11% Similarity=-0.013 Sum_probs=125.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHhhcCCC-----CChhHHHHHHHH
Q 003531 314 AYVEGGNPEEAMRIFQKMLDQGVEPTN----VTIMEALHACADLGDLERGIFVHKLLDQLKLG-----TDVSMTNSLISM 384 (812)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~Li~~ 384 (812)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+.......-. ........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345667777777777776553111111 12233334455667777777776665543111 112233445556
Q ss_pred HHhCCChHHHHHHHHhcCCC-------C----cccHHHHHHHHHHcCChHHHHHHHHHHhhCC--CCCC--cccHHhHHH
Q 003531 385 YSKCKKVDRAADIFSKLQGK-------T----LVSWNAMILGYAQNGRVNEALNYFCKMRSKN--IKPD--SFTMVSVIP 449 (812)
Q Consensus 385 y~~~g~~~~A~~~f~~~~~~-------~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~ 449 (812)
+...|+++.|...+++.... + ...+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 67777777777776553320 1 1123334445566678888877777664421 1111 112222333
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCC--chh----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------HHHHHHHHH
Q 003531 450 ALAELSVIRYAKWIHALVIRSCFEK--NVF----VMTALIDMYAKCGAVGTARALFDMMNERHV-------TTWNVMIDG 516 (812)
Q Consensus 450 a~~~~~~~~~a~~i~~~~~~~~~~~--~~~----~~~~li~~y~k~g~~~~A~~~~~~m~~~~~-------~~~~~li~~ 516 (812)
.....|+.+.|...+..+....-.. ... .....+..+...|+.+.|.+.+.....+.. ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4455566666666655553321000 000 001112333446666666666655442210 112344455
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 517 YGTHGLGKAAVELFNKMLEG----PTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
+...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665442 22221 12344444555566666666666665553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00011 Score=76.18 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=65.6
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhH-HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPNDIT-FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGR 593 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 593 (812)
.+...|++++|+..++.++. -.||..- .......+...++.++|.+.++++.. ..|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 34445555555555555554 2333332 22333344555555555555555542 3343 3333344555555555
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++|...++.. .-.| |+..|+.|..+|...|+..++..+. +..|+-.|+|++|........
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 55555555554 1122 4455555555555555544444332 233445556666665555555
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
++
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=9.2e-05 Score=84.27 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHH
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFL 546 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 546 (812)
.+..+...+-.|.......|..++|..+++... .|| ...+..++..+.+.+++++|+..+++.+. ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345668888889999999999999999999988 354 56788889999999999999999999999 567755 556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAML 617 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll 617 (812)
.+..++.+.|.+++|..+|+++... .| +...+..+...+-+.|+.++|...|++. ...|....++.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677889999999999999999852 34 4788999999999999999999999988 3344444444443
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.16 E-value=0.00036 Score=80.72 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=151.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-----cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-----SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTA 481 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 481 (812)
..|-..|.-..+.++.++|.+++++.... +.+. ...|.++++.--.-|.-+...++|+++.+.. ....+|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 45666666666667777777776666542 2111 1234444444444445555666666665543 23456788
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHH-HHHHHHhc
Q 003531 482 LIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLC-AISACSHS 555 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~-ll~a~~~~ 555 (812)
|...|.+.++.++|-++|+.|.+ .....|...+..+.++++.+.|.+++.+.++. -|. .+-+.+ .+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 89999999999999999999984 35678999999999999999999999999884 444 333332 23344678
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~ 630 (812)
|+.+.|+.+|+.....| +-..+.|+.++++-.+.|..+.+.++|++. .+.|. -..|.-.+..-..|||-+..+
T Consensus 1614 GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999999888653 226778999999999999999999999887 34442 235555555555666655555
Q ss_pred HHHHHHh
Q 003531 631 KAANRLF 637 (812)
Q Consensus 631 ~~~~~~~ 637 (812)
.+=.++.
T Consensus 1692 ~VKarA~ 1698 (1710)
T KOG1070|consen 1692 YVKARAK 1698 (1710)
T ss_pred HHHHHHH
Confidence 5544444
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.15 E-value=0.00072 Score=66.71 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=172.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH---HHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCc
Q 003531 482 LIDMYAKCGAVGTARALFDMMNERHVTTWNVMI---DGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGL 557 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 557 (812)
|...+.-.|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+.++ .+||-. .-..-...+.++|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 445566678899999999888877777766654 467888999999999999988 788844 33334456788999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003531 558 VEEGIHYFTSLKKDYGIEPV----MDHYG------------AMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGA 619 (812)
Q Consensus 558 ~~~a~~~~~~m~~~~~~~p~----~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~ 619 (812)
+++|..-|+...+. .|+ .+++. ..+..+.-.|+...|++++..+ .+.| |+..+..-...
T Consensus 122 le~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 122 LEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999888753 331 12222 2233455678999999999887 6677 66666666666
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCC
Q 003531 620 CKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTK 699 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~ 699 (812)
|...|++..|+.-++.+-++..|+...+.-++.++...|+.+++....+.-.+.+. .
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp-----------------------d 255 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP-----------------------D 255 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc-----------------------c
Confidence 77889999999999999999999999999999999999999999887776665422 1
Q ss_pred CcchHHHHHHHHHHHHHHHHcCcccCCCCccccchhhhhhhchhccHHHHHHHccccCCCC-CcEEEEeccccc
Q 003531 700 HPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPG-STIHIRKNLRVC 772 (812)
Q Consensus 700 ~~~~~~i~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~~nl~~c 772 (812)
|...---|.+|..+.+.+..+.-. .+ -....+.++..-.++.+.|. .+||+----++|
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~-------------ie--~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQA-------------IE--EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------------Hh--hhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 433334455565555554432110 00 02335666666666766665 677664444444
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.033 Score=62.52 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCchHHHHHHHHh--hcCCChhHHHHhhccCC---CCChhHHHHHHHHHHhcCCchHHHHHH
Q 003531 52 SLKELRRILPLIIKSGLCDQHLFQTKLVSLF--CKYNSLSDAARVFEPIP---DKLDALYHTMLKGYAKFASLDDAVSFL 126 (812)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (812)
++..|.+..+.+.+..+. ..+...+.++ .+.|+.++|..+++... ..|..+...+-..|.+.+..++|+.+|
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345555566666665533 2333444444 48899999998888653 347778888889999999999999999
Q ss_pred HHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----------ChhHHHHHh
Q 003531 127 IRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCG----------QIEEAYKMF 196 (812)
Q Consensus 127 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g----------~~~~A~~~f 196 (812)
++.... -|+......+..++.+.+++..-.+.--++-+. ++.+++.+=+.++.+...- -+.-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 998764 577778888889999988877655554444443 4555555555565554431 123455555
Q ss_pred ccCCCCC-cc-hHH---HHHHHHHhCCChHHHHHHHH-HHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCC
Q 003531 197 DRMPERD-LV-SWN---TIVAGFAQNGFAELALDLVT-RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGF 270 (812)
Q Consensus 197 ~~~~~~~-~~-~~~---~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 270 (812)
+.+.+.+ .. +-. .-...+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-..++..|.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5555433 11 111 11123345667777777773 333322222333333445555666667666666666666653
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0005 Score=71.58 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=89.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~ 627 (812)
.....|.+++|+..++.+.+. .| |+......++.+.+.|+.++|.+.++++ ...|+ ...|-++..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 445667778888888777643 44 5666667778888888888888888777 55665 567777777888888888
Q ss_pred HHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 628 LGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+|+..++....-+|+|+..|..|+..|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887777666544
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.5e-06 Score=53.67 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 003531 205 VSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDF 239 (812)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 239 (812)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=7.4e-05 Score=67.28 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=90.0
Q ss_pred HHHHHHhCCCCCCh-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 529 LFNKMLEGPTKPND-ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 529 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
.|++++. ..|+. .....+...+...|++++|.+.|+.+... .| +...+..++..+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 45643 44666777788899999999999888753 34 6788888999999999999999988887 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 606 IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 606 ~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 56788888888999999999999999999999987553
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0011 Score=63.04 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=119.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 480 TALIDMYAKCGAVGTARALFDMMNE--RH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
..++-+...+|+.+.|...++.+.. |+ +.-..+| -+-..|++++|+++++..++.. +-|.+++.-=+...-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344455567888888888877652 22 2222222 2445788999999999999864 4456777777777777
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHH
Q 003531 555 SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK---NVELG 629 (812)
Q Consensus 555 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g---~~~~a 629 (812)
.|+--+|++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -+.| ++..+..+...+...| |++.|
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888888888887764 5668899999999999999999999999988 4566 5667777777755444 78899
Q ss_pred HHHHHHHhccCCCCccc
Q 003531 630 EKAANRLFELDPDEGGY 646 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~ 646 (812)
.+.+++++++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 99999999999965433
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.7e-06 Score=53.36 Aligned_cols=35 Identities=43% Similarity=0.746 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCc
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDS 441 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 441 (812)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.00047 Score=79.29 Aligned_cols=232 Identities=10% Similarity=0.088 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHH
Q 003531 374 DVSMTNSLISMYSKCKKVDRAADIFSKLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPA 450 (812)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 450 (812)
+...+..|+..|...+++++|.++.+...+.+ +..|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 45556666666666666666666666443322 22333333355555554444433 2221 1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHH
Q 003531 451 LAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 451 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
.....++.....+...+.+.+ .+...+-.|..+|-+.|+.++|..+++++.+ .|+...|-+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 112222222222333333322 2333555666666666666666666666652 3455666666666666 666666
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPI 606 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 606 (812)
+++.+.+.. +...+++.++.+++.++.. ..| +...+--+...... ..+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~------------~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLG------------HREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHh------------hhcc
Confidence 666665542 4444566666666666653 233 22222211111111 1111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh
Q 003531 607 EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA 655 (812)
Q Consensus 607 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 655 (812)
..-..+|--+-.-|...++++++..+++.+++.+|+|..+..-|+..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2223345555566778889999999999999999999888887877775
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=9.6e-05 Score=77.77 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKI 622 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~ 622 (812)
..+++..+...+++++|+++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445677777888999999999998854 355 4455788888888888999998887 3344 56666666666888
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++++.|+.+++++.++.|++...+..|+.+|...|+|++|......+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
No 138
>PRK15331 chaperone protein SicA; Provisional
Probab=97.97 E-value=0.00014 Score=65.06 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=84.6
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh
Q 003531 573 GIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 573 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
|+.+ +.+..-....-+...|++++|..+|+-+ -..| +...|..|...|...|+++.|+..|..+..++++|+.++.+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 5555 2344444556667899999999999887 3344 56688999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCchHHHHHHHHHHH
Q 003531 650 LANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 650 l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+..|...|+.++|+..|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=5.5e-05 Score=80.06 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003531 550 SACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNV 626 (812)
Q Consensus 550 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~ 626 (812)
..+...|++++|++.|+++.+ +.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344455555555555555553 233 3444555555555555555555555554 3334 233455555555555555
Q ss_pred HHHHHHHHHHhccCCCCccchhh
Q 003531 627 ELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
++|+..++++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555444333
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00025 Score=74.70 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcC
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSG 556 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 556 (812)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++. .| |......-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666777889999999999999777666777888888888999999999999874 44 4445555566788999
Q ss_pred cHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003531 557 LVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEP 608 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 608 (812)
+++.|+.+.+++.+ +.| +..+|..|+.+|.+.|++++|+-.++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998884 577 56799999999999999999999999997554
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0021 Score=74.19 Aligned_cols=261 Identities=10% Similarity=0.035 Sum_probs=167.0
Q ss_pred CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHH
Q 003531 335 GVEPTN-VTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMI 413 (812)
Q Consensus 335 g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 413 (812)
+..|+. ..+..|+..+...++++.+.++.+...+... .....|-.+...|.+.++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 344544 4678889999999999999999997666542 2334444444477787877766555 233
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG 493 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 493 (812)
.......++.-...+...|.+. .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3344444453333344445442 2344577788888999999999999999999987 67889999999999999 999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHH-H--------------------HHHHHH
Q 003531 494 TARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITF-L--------------------CAISAC 552 (812)
Q Consensus 494 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~--------------------~ll~a~ 552 (812)
+|.+++.+. +..|...+++.++.++|.++.. ..|+.+.+ . -+-..|
T Consensus 167 KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 167 KAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 999998775 3447777788889999998888 45654433 1 122344
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGR----AGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH-KNV 626 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~-g~~ 626 (812)
....+++++..+++.+. .+.| |.....-+++.|.. .-++++++++ .+ .... .++
T Consensus 234 ~~~~~~~~~i~iLK~iL---~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~---s~--------------l~~~~~~~ 293 (906)
T PRK14720 234 KALEDWDEVIYILKKIL---EHDNKNNKAREELIRFYKEKYKDHSLLEDYLKM---SD--------------IGNNRKPV 293 (906)
T ss_pred hhhhhhhHHHHHHHHHH---hcCCcchhhHHHHHHHHHHHccCcchHHHHHHH---hc--------------cccCCccH
Confidence 44556666666666665 2344 34444444444431 1112222211 11 1122 355
Q ss_pred HHHHHHHHHHhccCCCCccc
Q 003531 627 ELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~ 646 (812)
..++.-|++.+..+|.+...
T Consensus 294 ~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 294 KDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred HHHHHHHHHHeeecCCCEEE
Confidence 67777888888777765443
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=7.1e-05 Score=72.94 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=49.9
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-TVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-~~~~~ll~~~~~~g~~~~a~ 630 (812)
+.+++++|+..|...+ .+.| |+.-|..=..+|.+.|.++.|.+-.+.. .+.|.. -.|..|+-+|.-.|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444444444444444 2344 3444444444555555555555444444 344432 25666666666666666666
Q ss_pred HHHHHHhccCCCCccchhhH
Q 003531 631 KAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 631 ~~~~~~~~~~p~~~~~~~~l 650 (812)
+.|+++++++|++..+...|
T Consensus 170 ~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhccCCCcHHHHHHH
Confidence 66667777777665444444
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=7e-05 Score=72.98 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=80.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchH
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 662 (812)
++-+.+.+++++|...+.++ .+.| |++.|..-..+|.+.|.++.|++..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 56677899999999999988 7787 677777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 003531 663 LAKVRTIMEKK 673 (812)
Q Consensus 663 a~~~~~~m~~~ 673 (812)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999877664
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00027 Score=64.40 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=22.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
...+...|++++|+..++.. .-.+-.+..+..+|++|...|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444331 1122223344455555555555555555544
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.008 Score=57.81 Aligned_cols=141 Identities=7% Similarity=-0.020 Sum_probs=96.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----h
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG----R 590 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~ 590 (812)
..|...|++++|++..+.... ......=...+.+..+.+-|.+.++.|.. +. +-.+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 346666777777776665211 11111222334455667777777777763 22 2334444444443 3
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHH
Q 003531 591 AGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 591 ~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 665 (812)
.+.+.+|+-+|++| +..|++.+.+-+...+...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 45788899999998 3678888888888888999999999999999999999999998888877778888776643
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.6e-05 Score=50.69 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003531 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRG 237 (812)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 237 (812)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00023 Score=62.34 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLG 618 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~ 618 (812)
+..+...+...|++++|...|..+.+.+.-.| ....+..++.++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555556666666666666654321111 1334445666666666666666666655 22232 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 619 ACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.+...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777777777777777777777776544
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=2.8e-05 Score=50.47 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP 540 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (812)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.00065 Score=75.09 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred CCChHHHHHHHHHHHh--C---CCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc--------CcHHHHHHHHHHHH
Q 003531 504 ERHVTTWNVMIDGYGT--H---GLGKAAVELFNKMLEGPTKPND-ITFLCAISACSHS--------GLVEEGIHYFTSLK 569 (812)
Q Consensus 504 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 569 (812)
..|...|...+.|... . +...+|..+|++.++ ..|+. ..|..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4667778777777543 2 236789999999998 67874 3444443333211 11222222222221
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 570 KDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 570 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.......+...|..+.-.....|++++|...++++ .+.|+...|..++..+...|+.++|...+++++.++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11011123345555544444556666666666555 44555555555555566666666666666666666665543
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=2.8e-05 Score=60.48 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC-CchHHHHHHHHHHHc
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS-MWDKLAKVRTIMEKK 673 (812)
Q Consensus 609 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 673 (812)
++.+|..++..+...|++++|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999887764
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00017 Score=63.16 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhH
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLL 650 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 650 (812)
.++-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999888 33443 3466778888999999999999999999998875 4568899
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcC
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998763
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00012 Score=60.70 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS 658 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 658 (812)
+..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677777777777777765 3344 34566667777777788888888888888888877777778888888888
Q ss_pred CchHHHHHHHHHHH
Q 003531 659 MWDKLAKVRTIMEK 672 (812)
Q Consensus 659 ~~~~a~~~~~~m~~ 672 (812)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888877776654
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.001 Score=60.50 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC--hhHHHHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPND----ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV--MDHYGAM 584 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 584 (812)
..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+..... .-.|. ....-.|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 3344444 366777777777777764 2322 23334455667777777777777777754 22222 1233346
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003531 585 VDLLGRAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEKAANRLF 637 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 637 (812)
...+...|++++|+..++..+-.+ .+..+..++..+...|+.++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777788888888877653222 44566667777788888888888877653
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0021 Score=61.15 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL-CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVD 586 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 586 (812)
.|..++-+....|+.+.|...++++... + |...-.. .-..-+...|.+++|+++++...++ +| |..+|.-=+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3444555666789999999999999885 3 5433221 1222346689999999999999865 46 6777776667
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCc---h
Q 003531 587 LLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW---D 661 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~ 661 (812)
++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++-+.|-++..+..|++++...|-. +
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777788777888777666 45669999999999999999999999999999999999999999999999877754 4
Q ss_pred HHHHHHHHHHHc
Q 003531 662 KLAKVRTIMEKK 673 (812)
Q Consensus 662 ~a~~~~~~m~~~ 673 (812)
-|++++.+..+.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 566777766654
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=2.1e-05 Score=63.89 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 592 GRLNEAWDFIQKM-PIEP---GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 592 g~~~eA~~~~~~~-~~~p---d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
|++++|+.+++++ ...| +...|..+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 344555566666667777777777766 5666655566666677777777777777766
Q ss_pred HH
Q 003531 668 TI 669 (812)
Q Consensus 668 ~~ 669 (812)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00016 Score=71.18 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=90.5
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-C--CHHHHHHHHHHHhccCCCCccchh
Q 003531 575 EP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIH-K--NVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 575 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
+| |.+.|-.|+..|.+.|+++.|..-|.+. .+.| ++.++..+..++..+ | ...++..+++++++++|+|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56 8999999999999999999999999888 5555 567888888775443 2 578999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCC
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 679 (812)
.|+-.+...|++.+|...|+.|.+......|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987554333
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00031 Score=74.37 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=83.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhh
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGR 590 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 590 (812)
....+...|++++|++.|+++++ ..|+ ...|..+..++...|++++|+..++.+.+ +.| +...|..++.+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34566788999999999999999 4565 56788888899999999999999999884 566 67889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEPGITVFGAMLGAC 620 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~ 620 (812)
.|++++|...++++ .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667544444444333
No 158
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.01 Score=57.08 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----hcCcHH
Q 003531 484 DMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS----HSGLVE 559 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 559 (812)
..|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|++- -+..|.+.|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 3455666666666665553222222222 22233444556666666666551 23445554444442 234466
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIH-KNVELGEKAANRL 636 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~-g~~~~a~~~~~~~ 636 (812)
+|.-+|++|..+ ..|+..+.+-+.-+....|+++||..+++++ ....|+.+...++-.-... .+.+.-.+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666666542 3455555555555555666666666666655 2122344443333332223 3445555666666
Q ss_pred hccCCCCc
Q 003531 637 FELDPDEG 644 (812)
Q Consensus 637 ~~~~p~~~ 644 (812)
....|..+
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 66666543
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=8.8e-05 Score=56.78 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777788888888888888888888888888888888888888888888877654
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7e-05 Score=47.34 Aligned_cols=31 Identities=32% Similarity=0.643 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 003531 205 VSWNTIVAGFAQNGFAELALDLVTRMHEEGR 235 (812)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5789999999999999999999999988764
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0011 Score=62.36 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 003531 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYG 582 (812)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 582 (812)
....+..+...|...|++++|+..|++.++....++ ...+..+...+.+.|++++|...+.+..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677777778888888888888888877433332 24677777778888888888888887774 344 456666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC
Q 003531 583 AMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 583 ~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
.++.+|...|+...|..-++.+ ...++.|...++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433322 122677889999999999976 4444444444443
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=7.3e-05 Score=47.26 Aligned_cols=31 Identities=39% Similarity=0.789 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 003531 306 VSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV 336 (812)
Q Consensus 306 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 336 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.00036 Score=65.48 Aligned_cols=94 Identities=10% Similarity=-0.165 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
....|..++..+...|++++|...+++. .+.|+ ..+|..+...+...|++++|+..++++++++|+....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455667777777888888888888777 33333 347888888999999999999999999999999888888888
Q ss_pred hhhh-------hcCCchHHHHHHHHH
Q 003531 652 NIYA-------AASMWDKLAKVRTIM 670 (812)
Q Consensus 652 ~~~~-------~~g~~~~a~~~~~~m 670 (812)
.+|. ..|++++|...++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888766666544
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0034 Score=63.92 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEPG-----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS 658 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 658 (812)
++...+.|++.+|.+.+.+. .+.|+ +..|.....+..+.|+.++|+.-.+++++++|.-...|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999887 55554 3445555566778999999999999999999988888999999999999
Q ss_pred CchHHHHHHHHHHHc
Q 003531 659 MWDKLAKVRTIMEKK 673 (812)
Q Consensus 659 ~~~~a~~~~~~m~~~ 673 (812)
+|++|.+-++...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988765
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0005 Score=64.78 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhh
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLAN 652 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 652 (812)
...+..++..+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445566666666777777777777665 22222 3567777788888888888888888888888888888888888
Q ss_pred hhhhcCC
Q 003531 653 IYAAASM 659 (812)
Q Consensus 653 ~~~~~g~ 659 (812)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00026 Score=54.19 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
++..+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5567 456888999999999999999999999999999864
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00014 Score=56.27 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888766654
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.43 E-value=0.14 Score=52.22 Aligned_cols=241 Identities=17% Similarity=0.129 Sum_probs=161.1
Q ss_pred HcCChHHHHHHHHHHhhCCCCCC--cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 418 QNGRVNEALNYFCKMRSKNIKPD--SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
-.|++++|.+-|+-|... |. ..-+..|.-...+.|+.+.+.++-+..-..- +.-.-.+.+++...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357888888888888752 21 1122233333456777777777766655432 12234567788889999999999
Q ss_pred HHHHHhcC-----CCChH--HHHHHHHHHH---hCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHH
Q 003531 496 RALFDMMN-----ERHVT--TWNVMIDGYG---THGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHY 564 (812)
Q Consensus 496 ~~~~~~m~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 564 (812)
+++.+.-. ++|+. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-.....++.+.|++.+|-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99998655 45543 2233333322 23467778777777776 788855 445566788999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 565 FTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 565 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
++.+=+ ..|.+.++.. ..+.|.|+.. ++-+++. .++|| ..+..+...+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 998864 4666655533 3445666532 2222222 45675 446666777788899999999999999999
Q ss_pred CCCCccchhhHhhhhhhc-CCchHHHHHHHHHHH
Q 003531 640 DPDEGGYHVLLANIYAAA-SMWDKLAKVRTIMEK 672 (812)
Q Consensus 640 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 672 (812)
.|. ..+|.+|+++-... |+-.+++.+..+..+
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 995 67889999997555 888888777655543
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.0018 Score=53.39 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
.+...|++++|..+++...+. .| +...+..++..+...|++++|.+.+++. ...| +..+|..+...+...|+.+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444321 12 2233444444455555555555555443 2222 2345555666666666666
Q ss_pred HHHHHHHHHhccCC
Q 003531 628 LGEKAANRLFELDP 641 (812)
Q Consensus 628 ~a~~~~~~~~~~~p 641 (812)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 67666666666655
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0048 Score=57.80 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+..++...+ +.| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777777788888888888888876432221 23677777788888888888888877764 344 3455556
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 584 MVDLLG-------RAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 584 li~~~~-------~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
++..+. +.|++++|... +++|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 666665 33333333322 446677788888888854
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0044 Score=63.27 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH-HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA-CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 586 (812)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998642 2234445544444 3446777779999999988743 46677889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 587 LLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.-=.++|+.+...++.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 32333 249999999999999999999999999998887543
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.0003 Score=54.56 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK-NVELGEKAANRLFELDP 641 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 641 (812)
++..|..++..+.+.|++++|+..|++. .+.| +..+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567777888888888888888888777 5556 4568888888899998 79999999999999988
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.28 Score=50.73 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHH
Q 003531 480 TALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVE 559 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 559 (812)
+..|.-+...|+...|.++-.+-.-||-.-|-..+.+|+..+++++-.++... +-.++-|-..+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566678888888888888888888898999999999998876665432 224578888888888889888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGAC 620 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~ 620 (812)
+|..+...+. +..-+.+|.++|.+.+|.+.--+.. |...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8888776521 2446778888999888877755542 444444444433
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.00073 Score=54.80 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTK-PNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA 597 (812)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...| +....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777663211 1233444466666777777777776665 2 1222 223333446666666666666
Q ss_pred HHHHHh
Q 003531 598 WDFIQK 603 (812)
Q Consensus 598 ~~~~~~ 603 (812)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 175
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.27 E-value=0.37 Score=51.40 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChHHHHHHHHHHHhCCCHHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCG---AVGTARALFDMMNE----RHVTTWNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (812)
+++..+++..+..-...+..+|.++.+---..- ..+.....+++... .-..+|-.+++.-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566665555443445555554443211111 23444455555441 22346777777777777789999999
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 003531 531 NKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PI 606 (812)
Q Consensus 531 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~ 606 (812)
.+..+.+..+- .....+++. |--.++.+-|..+|+.=.+.+|-.| .--.+.++-+.+.|+-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999888883 445555554 4456889999999998777765444 44567788899999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----cchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 607 EPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG----GYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 607 ~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.|| ..+|..++.--..-||+....++-++....-|.+. ..-.++.+-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 45999999999999999999999988876555221 12345666777777776555544444
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.26 E-value=0.55 Score=53.23 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCChhHHHHhhccCCC--CChhHHHHHHHHH--HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHH
Q 003531 84 KYNSLSDAARVFEPIPD--KLDALYHTMLKGY--AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159 (812)
Q Consensus 84 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 159 (812)
..+++..|....+++.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34566666666655422 332 344445543 4567777777666666544433 55566666666667777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChh----HHHHHhccCCCCCcchHHHH
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNMYAKCGQIE----EAYKMFDRMPERDLVSWNTI 210 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~l 210 (812)
++++..... |+......+-.+|.+.+++. .|.+++...+++--.-|+.+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 777766553 44555556666666655443 35556665555444455543
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.00063 Score=53.43 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..+...++++.|.++++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888999999999999999988888888999999999999999988888765
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.00025 Score=54.85 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=29.1
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
..|++++|+++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 455666666666665543 33 4455555555555555555555555555 3344433
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.20 E-value=0.00011 Score=47.27 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCccchhhHhhhhhhcCCchHHH
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLA 664 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 664 (812)
+++++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.027 Score=51.05 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-----CCCCH
Q 003531 538 TKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P-----IEPGI 610 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-----~~pd~ 610 (812)
..|....-..|..+....|+..||...|++... |+-. |....-.+..+....++..+|...+++. . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777888888888888888887763 5544 6677777778888888888888888776 2 23443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
-..+...+...|.+++|+..|+.++.--|+ +..-...+..+.++|+.+++..-...+.+
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344667788899999999999999998884 67777788899999999988765554443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.0076 Score=66.78 Aligned_cols=134 Identities=10% Similarity=-0.000 Sum_probs=99.7
Q ss_pred CCCChhHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 003531 538 TKPNDITFLCAISACSHS-----GLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRA--------GRLNEAWDFIQK 603 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~ 603 (812)
.+.|...|...+.+.... +..++|..+|++..+ ++|+ ...|..+..++... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456777888888876543 337789999999884 5784 55666554444321 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 604 M---P-IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 604 ~---~-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
. + ...++.++.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 2 223567788777777778999999999999999999 578999999999999999999999998877643
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.06 Score=55.20 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C--CHHHHHHHHH---HHHh
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPV----MDHYGAMVDLLGRAGRLNEAWDFIQKMP---IE-P--GITVFGAMLG---ACKI 622 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~-p--d~~~~~~ll~---~~~~ 622 (812)
|++++|+++|++....+.-... ...+..++..+.+.|++++|.++|++.. .. | ...+-..++. .+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5555555555554433221111 3345566777888888888888887761 11 1 1111112222 3445
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 003531 623 HKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
.||...|.+.+++....+|.-.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 6899999999999998888543
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.69 Score=50.74 Aligned_cols=201 Identities=13% Similarity=0.108 Sum_probs=113.7
Q ss_pred CCCcchHHHHHHHhcCcCChHHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc
Q 003531 135 APVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVN-GF--------SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV 205 (812)
Q Consensus 135 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~--------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 205 (812)
.|-+..|..+.......-+++.|+..|-+.... |+ -.+.....+=|.+| .|.+++|++++-.|.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 456666666665555555555555544332111 11 11111222223333 38899999999988887763
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----cchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003531 206 SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGD----FITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALV 281 (812)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 281 (812)
|..+.+-|++-...++++. -|-..| ...|..+-..++....|+.|.+.+.+.-.. ..++
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 5666777777766666542 111111 134555666666666677777666543211 2355
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 003531 282 DMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIF 361 (812)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 361 (812)
++|.+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-+-- .| -..+.+|...+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655 44455667778888888888877764431 11 134556666667666665
Q ss_pred HHH
Q 003531 362 VHK 364 (812)
Q Consensus 362 i~~ 364 (812)
+-+
T Consensus 900 laq 902 (1189)
T KOG2041|consen 900 LAQ 902 (1189)
T ss_pred HHH
Confidence 543
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.0038 Score=62.56 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhh
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLAN 652 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 652 (812)
|..-+..+.+.|++++|...|+.. ...|+ +..+.-++.++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555444 12222 1233445555666666666666666666655553 334444566
Q ss_pred hhhhcCCchHHHHHHHHHHHc
Q 003531 653 IYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 653 ~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+|...|++++|.++++...+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665554
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.0018 Score=65.53 Aligned_cols=129 Identities=11% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH---HHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 003531 544 TFLCAISACSHSGLVEEGIHYFTS---LKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-------PI-EPGIT 611 (812)
Q Consensus 544 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~-~pd~~ 611 (812)
.|..|.+.|.-.|+++.|+..++. +.+.+|-.. ....+..+.+++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666777889999887764 334555544 3567888888999999999998888765 11 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC----C--CCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELD----P--DEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+..+|.+.|....+++.|+.++.+-+.+. . .....+..|+++|...|..+.|....+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77889999998889999999888766532 1 2245678899999999999988877665543
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.012 Score=52.65 Aligned_cols=87 Identities=10% Similarity=-0.064 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPND-ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
++..-+.+.|++++|.++|+-+.. +.|.. .-|..|..+|-..|++++|+..|..... +.| |+..+-.++.++.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHH
Confidence 333444455555555555555555 34432 2334444444555555555555555442 233 3444444455555
Q ss_pred hcCCHHHHHHHHHh
Q 003531 590 RAGRLNEAWDFIQK 603 (812)
Q Consensus 590 ~~g~~~eA~~~~~~ 603 (812)
..|+.++|.+-|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555554443
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.02 Score=51.88 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-
Q 003531 567 SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD- 642 (812)
Q Consensus 567 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 642 (812)
+..++..+.|++.+--.|...+.+.|+..||...|++. .+.-|......+..+....++...|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 44445567898888889999999999999999999988 45568889999999999999999999999999999885
Q ss_pred -CccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 643 -EGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 643 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+.....++..|...|++.+|+.-|+.....
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4567788999999999999999999988765
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.014 Score=50.44 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=68.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
+..++-..|+.++|+.+|++.+..|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677888999999999999999887665 34677888899999999999999998886643222 2223333455778
Q ss_pred hcCCHHHHHHHHHh
Q 003531 590 RAGRLNEAWDFIQK 603 (812)
Q Consensus 590 ~~g~~~eA~~~~~~ 603 (812)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887754
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.89 Score=49.93 Aligned_cols=269 Identities=15% Similarity=0.119 Sum_probs=115.7
Q ss_pred HHHHHhCCChHHHHHHHhcCCCC-----CchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 003531 281 VDMYAKCGRVETARLVFDGMKSR-----NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 355 (812)
|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 34444555555555544432211 1234555555555555555555555442210 112222222222
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhC
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSK 435 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (812)
+++-+.+.. .++.+....-.+.+|+.+.|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+...-
T Consensus 838 f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 222221111 223444555556666666666666666554443321 233445555566666655544321
Q ss_pred CCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH---HHHH
Q 003531 436 NIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVT---TWNV 512 (812)
Q Consensus 436 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~---~~~~ 512 (812)
|...| +|.- .+-++++ +.. ..--|.++-+.|+.-+|.+++.+|.++... .|.-
T Consensus 907 ---~qv~t---liak--------~aaqll~---~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQT---LIAK--------QAAQLLA---DAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHH---HHHH--------HHHHHHh---hcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 21111 1110 1111111 110 011256677888877777777777632111 1111
Q ss_pred HHHHH----HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 003531 513 MIDGY----GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588 (812)
Q Consensus 513 li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 588 (812)
+=..| .-..+..++++-.++....|...|... +...|...++-.+.+..=+ -..+.|+-.|..--
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHH
Confidence 10111 111223344444444444443333221 1223333333333332110 12345555666666
Q ss_pred hhcCCHHHHHHHHHhC
Q 003531 589 GRAGRLNEAWDFIQKM 604 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~ 604 (812)
...|+.+.|++---.+
T Consensus 1032 l~eg~v~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALIL 1047 (1189)
T ss_pred HHhchHHHHHHHHhhh
Confidence 6788888887654333
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.66 Score=48.02 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI 457 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 457 (812)
.+.-|.-+...|+...|.++-.+..-++-.-|-..|.+|+..++|++-.++-.. +-.++-|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788889999998888888888899999999999999877665432 22457888889999988888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8887776552 135668889999999988766433
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.88 E-value=0.66 Score=47.57 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----h-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhc-CCCCC--hhHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-----D-ITFLCAISACSHSGLVEEGIHYFTSLKKDY-GIEPV--MDHY 581 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~ 581 (812)
..+...+.+.|++++|+++|++....-...+ . ..|...+-++...|++..|...|++..... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 4456777888888888888888776432211 1 123334445666788888888888776321 22222 3344
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHhC
Q 003531 582 GAMVDLLGR--AGRLNEAWDFIQKM 604 (812)
Q Consensus 582 ~~li~~~~~--~g~~~eA~~~~~~~ 604 (812)
..|++++-. ...+++|..-|+.+
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 455555543 33567777777776
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.87 E-value=0.0022 Score=50.25 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
.+|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888888888888887 5566 5567888888889999999999999999999998765543
No 193
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.009 Score=61.30 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEE
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEV 690 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 690 (812)
.++..|...|.+.+++..|+....++++++|+|.-.++.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 355666667788999999999999999999999999999999999999999999999999875
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 691 HSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 691 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
.|.++.|...|..|..++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 57778888777777776654
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.82 E-value=0.013 Score=62.29 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003531 208 NTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKC 287 (812)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 287 (812)
.++|+.|.+.|..++++.+++.=...|+-||.+||+.+|+.+.+.|++..|.++...|...+.-.+..++..-+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555555555555555555555555555555555555544444444433333333333
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.81 E-value=0.29 Score=53.06 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=89.4
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh
Q 003531 263 GYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342 (812)
Q Consensus 263 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 342 (812)
+.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-------- 674 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-------- 674 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH--------
Confidence 34555665565443 34445566888888887754 45556666666665421
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCh
Q 003531 343 IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRV 422 (812)
Q Consensus 343 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 422 (812)
-..+-+...|+-++-+.+...-.+. .-+..--.+...++...|+.++|..+. ..+|-.
T Consensus 675 --D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~ 732 (1081)
T KOG1538|consen 675 --DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWV 732 (1081)
T ss_pred --HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHH
Confidence 1112222233333222222111110 001111123445566666666665542 333444
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMM 502 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m 502 (812)
+-+.++-+++-. .+..+...+..-+-+...+..|.+||..+-. ..+++++....+++.+|..+-++.
T Consensus 733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 444444444322 2233344444444455556666666665532 235677777888888888888877
Q ss_pred CC
Q 003531 503 NE 504 (812)
Q Consensus 503 ~~ 504 (812)
++
T Consensus 800 Pe 801 (1081)
T KOG1538|consen 800 PE 801 (1081)
T ss_pred cc
Confidence 74
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.81 E-value=0.0031 Score=66.19 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI----TVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
+...++.++.+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555666666666666665553 445542 23555555556666666666666666554
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.75 E-value=0.0019 Score=44.68 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhh
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLAN 652 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 652 (812)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999988877764
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.1 Score=51.98 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=38.2
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCccc------HHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 381 LISMYSKCKKVDRAADIFSKLQGKTLVS------WNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
....+.+.|++++|.+.|+++....+.+ .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444566788888888888876543321 2235566778888888888888887753
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.74 E-value=0.019 Score=57.57 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=56.3
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNV 626 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~ 626 (812)
...|++++|...|+.+.+.|.-.+ ....+-.++..|...|++++|...|+++ ...|+ ...|..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444666666666666665432221 1234555666666666666666666665 11222 33555566667788888
Q ss_pred HHHHHHHHHHhccCCCCc
Q 003531 627 ELGEKAANRLFELDPDEG 644 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~ 644 (812)
+.|...++++++..|+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 889999988888888654
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.71 E-value=0.69 Score=45.28 Aligned_cols=194 Identities=18% Similarity=0.140 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAIS 550 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 550 (812)
..........+...+.+..+...+.... ......+..+...+...+++.++.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3455566666777777777777766653 2344556666666777777788888888777643222 122222222
Q ss_pred -HHHhcCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003531 551 -ACSHSGLVEEGIHYFTSLKKDYGIEP----VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG--ITVFGAMLGACKI 622 (812)
Q Consensus 551 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd--~~~~~~ll~~~~~ 622 (812)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887743 222 3344444445566778888888888776 33333 5677777777888
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++.+.|...+.++++..|+....+..++..+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888865556667777777667788887777766654
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.70 E-value=1 Score=47.17 Aligned_cols=353 Identities=12% Similarity=0.124 Sum_probs=176.4
Q ss_pred HhHHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhC
Q 003531 243 VSILPAVANVGSLRIGKAVHGYAMRAGFD----SIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEG 318 (812)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (812)
...+..+...|++.+|+.++..++..-++ -+..+|+.++-++++.=-++ +-+.+...=..-|.-||-.|.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence 34455667788888888887777665443 67778888777776532111 11112211223355566555443
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhCCChHHHH
Q 003531 319 GNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL--GDLERGIFVHKLLDQLKLGTDVS-MTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 395 (812)
=..-++ ---..+.|....+..++....-. ..+.--.+++..-.+.-+.|+-. +...|+.-+.+ +.+++.
T Consensus 208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 111110 00001233333333343332221 12233334444444444455422 23344444444 333333
Q ss_pred HHHHhc--------CCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHH-------hHHHHHh-ccc---c
Q 003531 396 DIFSKL--------QGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV-------SVIPALA-ELS---V 456 (812)
Q Consensus 396 ~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~-~~~---~ 456 (812)
.+-+.+ .++=+.++..++...++.++..+|.+.+.-+.. +.|+...-. .+-+..+ .-. +
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 333222 222345678888888999999999888876654 334432111 1111111 111 1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHH---HHHhcCC-HHHHHHHHHhcC---CCChHHHHHHH----HHHHh---CCC
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALID---MYAKCGA-VGTARALFDMMN---ERHVTTWNVMI----DGYGT---HGL 522 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~---~y~k~g~-~~~A~~~~~~m~---~~~~~~~~~li----~~~~~---~g~ 522 (812)
+..-..+|+.+....+..-. ...-|+. -+=+.|. -++|.++++.+. .-|...-|... .+|.+ ...
T Consensus 358 lr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22223334444433332211 1111221 1223344 777888887766 23444333322 22322 122
Q ss_pred HHHHHHHHHHHHhCCCCCChh----HHHHHHH--HHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 003531 523 GKAAVELFNKMLEGPTKPNDI----TFLCAIS--ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE 596 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 596 (812)
..+-+.+-+-..+.|+.|-.+ .-+.+.. -+...|++.++.-+-.-+. .+.|++.+|..++-.+....+++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 333444444445667777322 2222322 3456788888766554444 478888899888888888889999
Q ss_pred HHHHHHhCCCCCCHHHHHH
Q 003531 597 AWDFIQKMPIEPGITVFGA 615 (812)
Q Consensus 597 A~~~~~~~~~~pd~~~~~~ 615 (812)
|.+++.++| |+..+|++
T Consensus 514 A~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhCC--CchhhHHH
Confidence 999998885 56666655
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.026 Score=60.06 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCcccHHhHHHHHhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHH
Q 003531 438 KPDSFTMVSVIPALAELSVIRYAKWIHALVIRS--CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN----ERHVTTWN 511 (812)
Q Consensus 438 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~ 511 (812)
+.+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..++|.+++..=. -||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555555555555555555554444332 111122233455666666666666665555433 25556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS 555 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 555 (812)
.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666555555556665555555443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.21 Score=48.15 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC-----CCchhHHHHHH
Q 003531 409 WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF-----EKNVFVMTALI 483 (812)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~li 483 (812)
-+.++..+.-.|.+.-.+.++++.++...+-+......+.+...+.|+.+.+...++.+.+..- ..+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4566666777788888888888888866556667777777777888888888888887766433 33333333334
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003531 484 DMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL 546 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 546 (812)
..|.-..++.+|...|+++.. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 456667788888888887773 4555555544445557888899999998888 556555444
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.015 Score=50.19 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CccchhhHhhhhhhc
Q 003531 586 DLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPD---EGGYHVLLANIYAAA 657 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 657 (812)
.++-..|+.++|..++++. ++... ...+-.+.+.++..|++++|+.++++.++-.|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3344455555555555544 11111 124445666677777777777777777776666 455556666677777
Q ss_pred CCchHHHHHHHH
Q 003531 658 SMWDKLAKVRTI 669 (812)
Q Consensus 658 g~~~~a~~~~~~ 669 (812)
|+++||.+.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 777777766543
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.59 E-value=0.02 Score=47.57 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHhcCcC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 003531 106 YHTMLKGYAKFASLDDAVSFLIRMRYDDV-APVVYNYTYLLKVCGDVG--------EIRRGKEIHGQLIVNGFSLDLFAM 176 (812)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~ 176 (812)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 999999999999887653 244567788999999999999999
Q ss_pred HHHHHHHHh
Q 003531 177 TGVVNMYAK 185 (812)
Q Consensus 177 ~~Li~~y~~ 185 (812)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.57 E-value=0.48 Score=51.44 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=7.1
Q ss_pred CcchHHHHHH
Q 003531 203 DLVSWNTIVA 212 (812)
Q Consensus 203 ~~~~~~~li~ 212 (812)
+.++||+...
T Consensus 498 nSV~wNT~~E 507 (1081)
T KOG1538|consen 498 NSVAWNTQCE 507 (1081)
T ss_pred ceEEeecccc
Confidence 6678988653
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.54 E-value=0.18 Score=50.22 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CCh-HH---HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHH
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNE--RHV-TT---WNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISAC 552 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 552 (812)
.....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+ ...+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344455667888888888888763 322 12 233556677888888888888888873 343 33444444443
Q ss_pred Hh--cC---------------c---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003531 553 SH--SG---------------L---VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV 612 (812)
Q Consensus 553 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~ 612 (812)
+. .+ + ..+|...|+.+++. |-...-..+|...+..+. +...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHH
Confidence 32 11 1 12333444444433 222333344444333331 1010
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 613 F--GAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 613 ~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
- -....-|.+.|++.-|..-++.+++--|+. ..+...+.++|...|..++|..+.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 123344788899999999999999987754 3567788999999999999999887654
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.9 Score=48.12 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=68.2
Q ss_pred cCCCCCcchHHh-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---ChHHHHHHHhcCCC--
Q 003531 233 EGRRGDFITIVS-----ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCG---RVETARLVFDGMKS-- 302 (812)
Q Consensus 233 ~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~-- 302 (812)
-|+..+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+.. +-+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 455555444433 4455555666666666655543211111 455566666666552 22233344444444
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHhccCChHHHHHHHHHHh
Q 003531 303 RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV----EPTNVTIMEALHACADLGDLERGIFVHKLLD 367 (812)
Q Consensus 303 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 367 (812)
..-++|..+..-..+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4556777777777788888888777653111110 0111123344455555566555555544443
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.52 E-value=0.3 Score=50.99 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=101.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---C----hHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 482 LIDMYAKCGAVGTARALFDMMNER---H----VTTWNVMIDGYGT---HGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
++-.|-...+++.-.++.+.+... + ...-....-++-+ .|+.++|++++..++...-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333477777777777777777642 1 1122223344555 78888999988886666667777788777765
Q ss_pred HHh---------cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH----HHHHH---Hh-C----CCCCCH
Q 003531 552 CSH---------SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE----AWDFI---QK-M----PIEPGI 610 (812)
Q Consensus 552 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~~-~----~~~pd~ 610 (812)
|-. ...+++|+..|.+. +.+.|+..+--.++.++..+|...+ ..++- .. . ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 522 22467777777654 4566766555555555666664222 22222 11 1 123333
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 T--VFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
. ...+++.++...||.+.|.+++++++++.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3 44788999999999999999999999998854
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.012 Score=49.93 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=74.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----cchhhHhhhhhhcCC
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG----GYHVLLANIYAAASM 659 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 659 (812)
-+++..|++++|++.|.+. .+-| .+..||.-..+++.+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567889999999998876 4444 677899999999999999999999999999764332 368888999999999
Q ss_pred chHHHHHHHHHHHcCC
Q 003531 660 WDKLAKVRTIMEKKGL 675 (812)
Q Consensus 660 ~~~a~~~~~~m~~~g~ 675 (812)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999888764
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.35 Score=46.69 Aligned_cols=233 Identities=10% Similarity=0.009 Sum_probs=133.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH-hcccc-HH-HHHHHHHHHHHh-CCCCchhHHHHHH
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL-AELSV-IR-YAKWIHALVIRS-CFEKNVFVMTALI 483 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~-~~-~a~~i~~~~~~~-~~~~~~~~~~~li 483 (812)
.|+.-+..+++....++|..-+....+-. .||- -|...-..+ .+.|. +. ..+.+|..+.+. |.+ +++|+
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qesLd 143 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QESLD 143 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHHHH
Confidence 45555666666666666655544443321 1211 000000000 11221 11 233445555442 322 56666
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--ChH--------HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 484 DMYAKCGAVGTARALFDMMNER--HVT--------TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
..|.-..-+++-...|+.-..| .+. .-+.++..+.-+|.+.-.+.++++.++...+-+......+.+.-.
T Consensus 144 Rl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 144 RLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 6666555555555555544322 222 335566666667788888899999998654556777788888888
Q ss_pred hcCcHHHHHHHHHHHHHhc----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHH
Q 003531 554 HSGLVEEGIHYFTSLKKDY----GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPI-EP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~-~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
+.|+.+.|..+|+...+.. ++.-..-+...+...|.-++++.+|...+.+.+. .| |++..|.-.-...-.|+..
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 9999999999999776543 2333333344444556667788888888877742 23 3333333322333457888
Q ss_pred HHHHHHHHHhccCCCCccch
Q 003531 628 LGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~ 647 (812)
.|++..+.+.+..|.....-
T Consensus 304 DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHhccCCccchhh
Confidence 88888888888888654433
No 212
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.47 E-value=0.038 Score=45.94 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcchHHhHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 003531 208 NTIVAGFAQNGFAELALDLVTRMHEEGR-RGDFITIVSILPAVANVG--------SLRIGKAVHGYAMRAGFDSIVNVST 278 (812)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (812)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999987654 2345677888888888999999998
Q ss_pred HHHHHHHh
Q 003531 279 ALVDMYAK 286 (812)
Q Consensus 279 ~li~~y~~ 286 (812)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 213
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.47 E-value=0.081 Score=54.06 Aligned_cols=125 Identities=14% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 003531 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAK-CGAVGTARALFDMMN---ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 444 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k-~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 519 (812)
|..++..+-+.+..+.|+.+|..+.+.+ ..+..+|-....+-.+ .++.+.|.++|+... ..+...|...+.-+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4445555555555566666665555332 1122233333333222 344444666666655 3455566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKPND---ITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
.|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666653 22222 2555555555666666666666666554
No 214
>PRK11906 transcriptional regulator; Provisional
Probab=96.40 E-value=0.1 Score=55.23 Aligned_cols=142 Identities=8% Similarity=0.092 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCChh-HHHHHHHHHHh---------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 522 LGKAAVELFNKMLE-GPTKPNDI-TFLCAISACSH---------SGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 522 ~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
..+.|+.+|.+.+. +.+.|+-. .|..+..++.. .....+|.+.-+... .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 35678888998882 23677643 44433332211 223445555555554 5667 7888888888888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh--HhhhhhhcCCchHHHH
Q 003531 590 RAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL--LANIYAAASMWDKLAK 665 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~ 665 (812)
-.|+++.|..+|+++ .+.|| +.+|....+.+...|+.++|.+.++++++++|....+-+. ..++|...+ .++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 889999999999998 67786 5588888888899999999999999999999976554333 334566554 455555
Q ss_pred HH
Q 003531 666 VR 667 (812)
Q Consensus 666 ~~ 667 (812)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.36 E-value=1.7 Score=45.67 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=58.8
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 597 AWDFIQKMPIEP----GITVFGAMLGA--CKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 597 A~~~~~~~~~~p----d~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
-..++++.++.| +..+-|.|..| ...+|++.++.....=+.+..| .+.+|-++|-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345556666665 34466777777 5689999999999998999999 7999999999999999999999988654
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.36 E-value=0.18 Score=48.84 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh-HHHHHHHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD-HYGAMVDL 587 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~ 587 (812)
-.....+.+.|++.+|++.|+++........ ......++.++.+.|++++|...++...+.+.-.|... .+-.++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3344556677888888888888877421111 23455667777888888888888888777665555321 11111111
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----------------chhhH
Q 003531 588 LGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG-----------------YHVLL 650 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l 650 (812)
+... ... .+ ...+..+....|...++.+++.-|+++- .-..+
T Consensus 89 ~~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 000 00 1122233455666677777776675432 22357
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..|.+.|.|..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 88899999999999999998876
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=2.4 Score=47.35 Aligned_cols=135 Identities=13% Similarity=-0.033 Sum_probs=75.1
Q ss_pred hCCCCCCcchHHH-----HHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChhHHHHHhccCCC-
Q 003531 131 YDDVAPVVYNYTY-----LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCG---QIEEAYKMFDRMPE- 201 (812)
Q Consensus 131 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~- 201 (812)
.-|++.+..-|.. +|+-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+.+.++=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666555544 3555556667777777665553221122 566777777776653 23333444444444
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCCcchHHhHHHHHhccCChHHHHHHHHHHH
Q 003531 202 -RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR----RGDFITIVSILPAVANVGSLRIGKAVHGYAM 266 (812)
Q Consensus 202 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 266 (812)
...++|..+.+-.-..|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+...+++-++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5566788887777788888888877653222110 1122334555556666666665555554443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.006 Score=48.53 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-----PIE---PG-ITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~-----~~~---pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+|+.++..|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555554443 011 11 23445555555555555555555555544
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.25 E-value=0.032 Score=52.53 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHHh-----cCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcC----------------ChHHHHH
Q 003531 101 KLDALYHTMLKGYAK-----FASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVG----------------EIRRGKE 159 (812)
Q Consensus 101 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~ 159 (812)
+|..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||+.+-+.. ..+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444433 3455555566778888888888888888888876422 2466888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNMYAKCGQ 188 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 188 (812)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88899999988999888888888866543
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.18 E-value=1.8 Score=44.40 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC-hhHHHHHHHHHHhcCcHH
Q 003531 484 DMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE-GPTKPN-DITFLCAISACSHSGLVE 559 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~ 559 (812)
..|.+.|++.++-.+++.+-+ |....|.. -.+.+.|+ .++.-+++... ..++|| ......+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 456677777777777776653 44443332 22334443 33333333221 115565 345556666667777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR-AGRLNEAWDFIQKM 604 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~ 604 (812)
.|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 7666554443 456777777777776653 47777777777665
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.046 Score=57.75 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003531 557 LVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGR---------AGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK 624 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g 624 (812)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.+++ .+.| |+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888755567774 5666666554432 22455677777776 5566 7778888888888888
Q ss_pred CHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 625 NVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++.|...|+++..++|+.+.++...+.+..-.|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998886654
No 222
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.79 Score=47.37 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=21.1
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCC-----ChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 518 GTHGLGKAAVELFNKMLEGPTKP-----NDITFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
.++|++.+|.+.|.+.+. +.| +...|.....+..+.|+.++|+.--+.
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 344555555555555444 222 222333333444445555555444433
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.05 E-value=0.063 Score=50.59 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=67.1
Q ss_pred HHHHhc--CCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc--------------
Q 003531 497 ALFDMM--NERHVTTWNVMIDGYGT-----HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS-------------- 555 (812)
Q Consensus 497 ~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 555 (812)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666643 356666666777777777777777777777655331
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 556 --GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 556 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234668899999985 5999999999999999988764
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.97 E-value=0.46 Score=46.22 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=73.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPT-KP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAG 592 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 592 (812)
..-.+.|++++|.+.|+.+..+.. .| ...+-..++-++-+.+++++|+...++..+.++-.|++. |...+.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs--- 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS--- 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH---
Confidence 334456666666666666665311 01 133455555566666666666666666666655555542 222333333
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-----------------cchhhHhhhh
Q 003531 593 RLNEAWDFIQKMP-IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG-----------------GYHVLLANIY 654 (812)
Q Consensus 593 ~~~eA~~~~~~~~-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~~ 654 (812)
.|...+ ...|. .-...|...+++++.--|+.. +.-..+++.|
T Consensus 118 -------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 118 -------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred -------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00011 113345555555555556432 2334678889
Q ss_pred hhcCCchHHHHHHHHHHHc
Q 003531 655 AAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 655 ~~~g~~~~a~~~~~~m~~~ 673 (812)
.+.|.|..|..-++.|.+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999876
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.97 E-value=1.8 Score=42.29 Aligned_cols=194 Identities=18% Similarity=0.116 Sum_probs=130.4
Q ss_pred HhHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-HHHHHHHH-HHHh
Q 003531 445 VSVIPALAELSVIRYAKWIHALVIRS-CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RHV-TTWNVMID-GYGT 519 (812)
Q Consensus 445 ~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~~~~ 519 (812)
......+...+....+...+...... ........+..+...+...+....+.+.+..... ++. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444443332 2233444555566666677778888888877663 222 23333333 6888
Q ss_pred CCCHHHHHHHHHHHHhCCCCC----ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCH
Q 003531 520 HGLGKAAVELFNKMLEGPTKP----NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 594 (812)
.|++++|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...|.+
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 9999999999999866 344 2334444555567888999999999988753 223 367788888999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 595 NEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 595 ~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999887 44554 456666666666777899999999999999986
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=4.2 Score=46.15 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHHhhcCCChhHHHHhhccCCCCChhHHHHH---HHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC
Q 003531 77 KLVSLFCKYNSLSDAARVFEPIPDKLDALYHTM---LKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE 153 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 153 (812)
.-+.++.+..-++.|..+-..-..+....-+.+ .+-+-+.|++++|..-|-+-... +.| ..+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 456666677777777777654433222222222 23455678888887776665432 122 335555555555
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 003531 154 IRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP 200 (812)
Q Consensus 154 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 200 (812)
+..-...++.+.+.|+ .+...-+.|+.+|.|.++.+.-.+..+...
T Consensus 413 IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5666666777777775 344455678888888888877776666554
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.0085 Score=47.65 Aligned_cols=62 Identities=5% Similarity=0.037 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFEL----DPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+++.+...|...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 47888999999999999999999999864 2222 45688999999999999999999988754
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.82 E-value=0.061 Score=54.89 Aligned_cols=128 Identities=10% Similarity=-0.055 Sum_probs=90.1
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCC--h
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIR----SCFE-KNVFVMTALIDMYAKCGAVGTARALFDMMN-------ERH--V 507 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-------~~~--~ 507 (812)
..|..+-+.|.-.|+++.+...|+.-++ .|-. .....+..|.+.+.-.|+++.|.+.|.... .+. .
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666778899999888875433 2211 234456778888888999999999887644 232 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh----CC-CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLE----GP-TKPNDITFLCAISACSHSGLVEEGIHYFTSLK 569 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 569 (812)
.+.-+|.+.|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4666788888888889999988876543 11 11234578889999999999999988776544
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.82 E-value=0.08 Score=48.16 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
....|+.+.+.+.+..+...|.-.+ +... ..........++++ -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3455667777777766665442211 2111 12222333333332 122456677778899999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988864
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.81 E-value=0.48 Score=45.79 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHh
Q 003531 483 IDMYAKCGAVGTARALFDMMNE--RH----VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSH 554 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~ 554 (812)
...+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...|++.++. -|+ ...+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3446677999999999988872 22 235666788899999999999999999884 343 2233333333322
Q ss_pred c-------------CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 003531 555 S-------------GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVF--GAMLGA 619 (812)
Q Consensus 555 ~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~--~~ll~~ 619 (812)
- +...+|...|+.+++. |=.....++|...+..+. +...- -.+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1 1223444455544443 444444555555544431 11111 123455
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCc---cchhhHhhhhhhcCCchHHHH
Q 003531 620 CKIHKNVELGEKAANRLFELDPDEG---GYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 665 (812)
|.+.|.+..|..-++.+++.-|+.. .....++..|.+.|..+.+..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999988754 356788889999999885543
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.75 E-value=0.054 Score=57.15 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-M---DHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
...++.+..+|.+.|++++|+..|++..+ +.|+ . ..|..+..+|...|++++|++.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677788888888888888888877763 5664 2 24777888888888888888887776
No 232
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.33 Score=48.29 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCC-HHHHH
Q 003531 541 NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAG---RLNEAWDFIQKM-PIEPG-ITVFG 614 (812)
Q Consensus 541 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~pd-~~~~~ 614 (812)
|...|..|..+|...|+.+.|...|....+- .| +++.+..+..++.... ...+|.++|+++ ..+|+ .....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5667888888888888888888888877653 33 5666666666655332 356788888887 56674 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
-|..++...|++.+|...++.+++..|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 55566888999999999999999877754
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.11 Score=53.66 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=99.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
.+.|.+.|++..|...|++.+.. -+ +...-+.++..... .. -...+..+.-++.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-AL--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-HH--------HHHHhhHHHHHHHhhhh
Confidence 46778888999999888887651 11 11111122222211 11 12356667788889999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHH-HHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKL-AKVRTIM 670 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 670 (812)
+.+|++..++. ...| |+-..---+.+|...|+++.|+..|+++++++|+|-.+..-|+.+-.+....++. +++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877 4555 5556666788899999999999999999999999988888888887777766655 7788888
Q ss_pred HHc
Q 003531 671 EKK 673 (812)
Q Consensus 671 ~~~ 673 (812)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 664
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.33 E-value=0.21 Score=44.06 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 588 LGRAGRLNEAWDFIQKM----PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
..+.|++++|.+.|+.+ |..| ..-.-..|+.++.+.|+++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34556666666666665 3223 2234455677778888888888888888888877654
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.32 E-value=0.79 Score=39.41 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=80.2
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 003531 518 GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 597 (812)
.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34677777788777776532 23334444433333334444445555544333322 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 598 WDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 598 ~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
..-+-.+. .+....+.-+++..++|.-++-.+++..+.+.+..+|...+-++++|.+.|...++.++++++=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44443332 123334555677888899999999999998766567889999999999999999999999999999875
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.30 E-value=0.41 Score=42.27 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccCCCC
Q 003531 626 VELGEKAANRLFELDPDE 643 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~ 643 (812)
...|...|++++..-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 567888888888888864
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.29 E-value=0.027 Score=36.13 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478889999999999999999999999999963
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.28 E-value=5.8 Score=43.49 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
+..+|..-++.-.+.|+.+...-+|++..-| -...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667888888888899999999999888743 2335655555555558888888888777765444445555444555
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAW---DFIQKM-PIEPGITVFGAMLG-----ACK 621 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~pd~~~~~~ll~-----~~~ 621 (812)
+...|+.+.|..+++.+..++ |+ +..-.--+....|.|+++.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998763 64 333334466777899999988 665554 22223333333222 144
Q ss_pred hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC
Q 003531 622 IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999998888888888766653
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.26 E-value=0.07 Score=52.28 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 606 IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 606 ~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..||..-| |+.++...|+++.|...|..+.+-.|+. |..+.-|+.+..+.|+.++|..+++...++
T Consensus 176 ~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 176 YTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566666 6667777777777777777777655544 456777788888888888888888777765
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.21 E-value=0.039 Score=35.30 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888999999999999999999999975
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.16 Score=44.44 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 003531 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPGITVFGAMLGACKI 622 (812)
Q Consensus 573 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~pd~~~~~~ll~~~~~ 622 (812)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666777777777777777777666554 444456677766655443
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.04 E-value=0.21 Score=45.34 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHH----HhcCCCCChhH
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLK----KDYGIEPVMDH 580 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 580 (812)
...++..+...|++++|+++.++++. ..| |...|..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566667777777777777776 344 45677777777777777777777776653 34577776554
No 243
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=8.4 Score=43.56 Aligned_cols=95 Identities=12% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCCC-----ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 003531 524 KAAVELFNKMLEGPTKP-----NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAW 598 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 598 (812)
+..+++|.+.-+..+-| ........+..|.+.|-++|-.-++.+|- .++.+|--+.-+.++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 45566666655443333 12233344555555566666555555542 12222322333445666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 599 DFIQKMPIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 599 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
++.++ +.|...|..|++.+..+-.+-.++
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 66654 458888988888776654444333
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=2.4 Score=40.74 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCccch
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKMP-------IEPGI-TVFGAMLGACKIHKNVELGEKAANRLFE----LDPDEGGYH 647 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~~-------~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 647 (812)
.|......|.|..+++||-..|.+-. --|+. -.+-+.+-.+....|+..|++.++.-.+ +.|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566677777777766665541 11222 1223333344445677778777777544 345566666
Q ss_pred hhHhhhhhhcCCchHHHHHH
Q 003531 648 VLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 648 ~~l~~~~~~~g~~~~a~~~~ 667 (812)
..|...| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6666655 456667666554
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.75 E-value=0.14 Score=44.74 Aligned_cols=95 Identities=9% Similarity=0.213 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSG 556 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 556 (812)
.++.+++.++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 345556666666666666666665432111 111111111 1122346788888899999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
++..|+++.+...+.|+++-+...|..|..-
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999977788888877653
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.75 E-value=0.41 Score=48.37 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC---hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCC--CC--ChhH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE-GPTKPN---DITFLCAISACSHSGLVEEGIHYFTSLKKDYGI--EP--VMDH 580 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 580 (812)
.|..+..++.+.-++.+++.+-+.-.. .|..|. .....++..|....+.++++++.|+...+--.- +| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444455444444555444333222 122221 112223444445555566666666655432111 11 2345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCccc
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-------PIEPG-----ITVFGAMLGACKIHKNVELGEKAANRLFEL--DPDEGGY 646 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~ 646 (812)
|..|...|++..++++|.-+..++ .+..= ..+...|.-+++..|.+-.|.+..+++.++ ...|..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666666666666666655444433 21110 112223334566666666666666666543 2222222
Q ss_pred ----hhhHhhhhhhcCCchHHHHHHH
Q 003531 647 ----HVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 647 ----~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
...++++|...|+.|.|..-++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2356666666666665544443
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.58 E-value=1.5 Score=39.28 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=61.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHH
Q 003531 483 IDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVE 559 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 559 (812)
|..+.+.+.......+++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHH
Confidence 3333334444444444444331 12334445555554432 2333444432 123444555677777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRA-GRLNEAWDFIQKMPIEPGITVFGAMLGACK 621 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~ 621 (812)
++..++.++.. +...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 87 ~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777765431 22233333333 7778888877763 25667777776654
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=94.56 E-value=0.43 Score=43.22 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK 624 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g 624 (812)
...-+-+.|++++|..+|.-+.. ..| +..-+..|...+-..|++++|..++..+ -+.+ |+...--....+...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34445678899999999887763 344 5566777888888888999999888766 1212 3333444556677889
Q ss_pred CHHHHHHHHHHHhccCCC
Q 003531 625 NVELGEKAANRLFELDPD 642 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~ 642 (812)
+.+.|+..|+.+++ .|.
T Consensus 120 ~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 120 KAAKARQCFELVNE-RTE 136 (165)
T ss_pred CHHHHHHHHHHHHh-Ccc
Confidence 99999999988887 343
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.42 E-value=3.4 Score=44.20 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHHhc
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP-I-EPGI--TVFGAMLGACKIH 623 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~-~pd~--~~~~~ll~~~~~~ 623 (812)
+..++-+.|+.+||++.|++|.+++.......+...|+..|...+.+.++..++.+-. + -|.. ..|++.+-..+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445555555555555555442222223344445555555556666555555542 1 1222 2333333222222
Q ss_pred CC---------------HHHHHHHHHHHhccCCCCccc
Q 003531 624 KN---------------VELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 624 g~---------------~~~a~~~~~~~~~~~p~~~~~ 646 (812)
++ ...|.++..++++.+|.-+.+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22 234678899999999965543
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=0.93 Score=48.29 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=99.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH--hhcCCHHH
Q 003531 519 THGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL--GRAGRLNE 596 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~e 596 (812)
+..+.+.-+++-++.++ +.||-.+...++ +-.....+.++.++|++..+. |- .. +.... ...|..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~---lg~s~~~~~~g~~-- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----AS---LGKSQFLQHHGHF-- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hh---hchhhhhhcccch--
Confidence 34556666667777776 667755544333 444556677888888776643 10 00 00000 011111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 597 AWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD--EGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 597 A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.+.+.+-...|-..+=..|...+++.|+.++|++.++.+++..|. +..+...|.+.+-..+.+.|+..+..+-.+..
T Consensus 247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 111111111222333344555667778888888888888776653 34567777888888888888877776654333
Q ss_pred CccCCcccEEEECCEEEEE-EeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCC
Q 003531 675 LQKTPGCSLVELKNEVHSF-YSGSTKHPQ-------SKRIYTFLETLIDEIKAAGYVPDT 726 (812)
Q Consensus 675 ~~~~~~~s~~~~~~~~~~f-~~~~~~~~~-------~~~i~~~l~~l~~~m~~~g~~p~~ 726 (812)
+.|....+|.. ..-.| ..||...|+ +......++-+.+.++...++|+-
T Consensus 326 lpkSAti~YTa---ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTA---ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHH---HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 32322222210 00000 122332232 122233456677778888888874
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.94 Score=45.41 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHH--H--HHHHhcCcHHHH
Q 003531 489 CGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCA--I--SACSHSGLVEEG 561 (812)
Q Consensus 489 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~a 561 (812)
.|+..+|...++++. ..|..+|+--=.+|..+|+.+.-...+++.+-. ..||...|..+ + -++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 355555555555555 245556666666666666666666666665543 23443222211 1 122445666666
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 562 IHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 562 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
++.-++.. .+.| |.-.-.+....+.-.|+..|+.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 65444433 3444 3333444555555566666666666554
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.15 E-value=0.36 Score=52.41 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred HHhCCCHHHHHHHHH--HHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 003531 517 YGTHGLGKAAVELFN--KMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 594 (812)
...+|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-..+ -++..++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777766664 2221 122 334666777778888888888765433222 3556688999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 595 NEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 595 ~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+.|.++.++.. +...|..|......+||++.|++++++.- -+..|.-+|...|+.+.-.++-+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877653 77899999999999999999999998653 45567777888888877777766666553
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.99 E-value=0.24 Score=45.70 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=70.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhc
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEPG------ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~pd------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
++-+.+.|.+++|..-+..+ .+-|. .+.|..-..+..+.+..+.|+....++++++|....+....+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45566778888888777665 22221 334444455677889999999999999999998888888889999999
Q ss_pred CCchHHHHHHHHHHHcC
Q 003531 658 SMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 658 g~~~~a~~~~~~m~~~g 674 (812)
..+++|..-++++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998763
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=0.53 Score=46.29 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN----DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
.|+.-+.. .+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.+.++-.| -++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 35566777777777777642 22 22344566777777777777777777777666555 3466666
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~ 604 (812)
|+..+.+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 666666666666666666555
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.81 E-value=7.3 Score=38.21 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=105.3
Q ss_pred HHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh-----
Q 003531 486 YAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH----- 554 (812)
Q Consensus 486 y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----- 554 (812)
-.+.|++++|.+.|+.+.... ..+--.++-++.+.+++++|+..+++.+..-..-...-|...|.+.+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 446799999999999998422 234455667788999999999999999984322223445555555542
Q ss_pred --cCcHH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHH
Q 003531 555 --SGLVE---EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV--FGAMLGACKIHKNVE 627 (812)
Q Consensus 555 --~g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~--~~~ll~~~~~~g~~~ 627 (812)
..+.. +|..-|+.++.++ |+ ..--.+|..-+.... |... =.++..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 12222 3333333344332 22 111122222221110 1111 123445688899999
Q ss_pred HHHHHHHHHhccCCCCc---cchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 628 LGEKAANRLFELDPDEG---GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
-|..-++++++.-|+.+ ..+..+.++|...|..++|.+..+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999876544 35667888999999999999988777653
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.58 E-value=0.37 Score=41.19 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-C-CH---HHHHHHHHHHHhcC
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE-P-GI---TVFGAMLGACKIHK 624 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p-d~---~~~~~ll~~~~~~g 624 (812)
.+..|+++.|++.|.+... +-| .+..||.-..+|--+|+.++|++-+++. .+. | .. ..+-.-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445555555555554442 233 4455555555555555555555555444 110 1 11 12222233466667
Q ss_pred CHHHHHHHHHHHhccCC
Q 003531 625 NVELGEKAANRLFELDP 641 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p 641 (812)
+.+.|..-|+.+-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777766666655543
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.58 E-value=2.6 Score=46.51 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=106.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCh-----hHHHHHHHHHH----hcCcHHHHHHHHHHHHHhcCCCCChh
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPND-----ITFLCAISACS----HSGLVEEGIHYFTSLKKDYGIEPVMD 579 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~ 579 (812)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666777777777777765532 11111 12333333332 256788899999998865 46554
Q ss_pred HHHH-HHHHHhhcCCHHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch-hhHh
Q 003531 580 HYGA-MVDLLGRAGRLNEAWDFIQKMP-----I-EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH-VLLA 651 (812)
Q Consensus 580 ~~~~-li~~~~~~g~~~eA~~~~~~~~-----~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l~ 651 (812)
.|.. -+..+...|++++|.+.|+++- . +-....+--+.+.+....++++|...+.++.+.+.-....| ...+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4443 3566778899999999999761 1 11334555677788889999999999999999776555544 4567
Q ss_pred hhhhhcCCc-------hHHHHHHHHHHHc
Q 003531 652 NIYAAASMW-------DKLAKVRTIMEKK 673 (812)
Q Consensus 652 ~~~~~~g~~-------~~a~~~~~~m~~~ 673 (812)
-+|...|+. ++|.++++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 777888988 7777777776553
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.39 E-value=2.2 Score=40.17 Aligned_cols=177 Identities=17% Similarity=0.107 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHH
Q 003531 490 GAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYF 565 (812)
Q Consensus 490 g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 565 (812)
|-..-|+--|.+.. .|+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444444444433 333 44666666666778888888888887777 4453 334444444555667777777655
Q ss_pred HHHHHhcCCCCChhHHHHH-HHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 566 TSLKKDYGIEPVMDHYGAM-VDLLGRAGRLNEAWDFI-QKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 566 ~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~~~-~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
...-+ -+|+- -|.+| +..--+.-+..+|..-+ ++.. .-|..-|..-+-.+..-+=-+ +.+++++.+-..++
T Consensus 157 ~~fYQ---~D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQ---DDPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHh---cCCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 44433 23321 12222 11112333555665443 3332 335556665554443322111 22333333322222
Q ss_pred -------ccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 644 -------GGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 644 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
.++|.-|+.-|...|..++|..+|+.....++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 46888999999999999999999998876543
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=18 Score=41.41 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=47.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCccchhhHhhhhhhcCCc
Q 003531 585 VDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-LDPDEGGYHVLLANIYAAASMW 660 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~ 660 (812)
+..+....+.+++..+.+..+-. |+..|-.++.-+...++.+.-.+...++++ +..++--.-..+.+++++.+..
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~l 787 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTL 787 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCce
Confidence 34455666777777777777522 788888888888888877766666666654 2222233334556666665543
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.36 E-value=5.7 Score=35.56 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC
Q 003531 346 ALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC 388 (812)
Q Consensus 346 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 388 (812)
++..+...+........++.+.+.+ ..+....|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3333433444444445555544444 24455566666666654
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=0.58 Score=45.69 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHhhccCC--CCChhHHHHHHHHHHhc-----CCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC---------
Q 003531 90 DAARVFEPIP--DKLDALYHTMLKGYAKF-----ASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE--------- 153 (812)
Q Consensus 90 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 153 (812)
..++.|...+ ++|-.+|-+++..+... +.++=....+..|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 57777888888776553 4555556678889999999999999999998865442
Q ss_pred -------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-hHHHHHhccCC
Q 003531 154 -------IRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQI-EEAYKMFDRMP 200 (812)
Q Consensus 154 -------~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~f~~~~ 200 (812)
-+-+..++++|...|+-||-.+-..|++++.+.+-. ....++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234677888888888888888888888888776542 23334444444
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.28 E-value=13 Score=39.35 Aligned_cols=67 Identities=7% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003531 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV---SWNTIVAGFAQNGFAELALDLVTRMHEEGRR 236 (812)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 236 (812)
+.|...|-.||.-|...|..++.++++++|..|-.. +|..-|++=....+++....+|.+.....+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 567778888888888888888888888888775443 6777777777777777777777777665444
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=2 Score=42.74 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAM---LGACKIHKNV 626 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~l---l~~~~~~g~~ 626 (812)
.....|+..+|...|+..... .| +...--.|+.+|...|+.++|..++..+|.+-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445667777777777766643 23 4556666777888888888888888887644333333221 2222222222
Q ss_pred HHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 627 ELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+. ..+++-+..+|+|...-..|+..|-..|+.++|...+=.+.++
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 221 2344556788999999999999999999999998776555544
No 264
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.98 E-value=0.22 Score=49.79 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHK 624 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g 624 (812)
-.+-|.++|.+++|+..|..-+ .+.| ++..+..-.-+|.+..++..|+.-.+.+ .+... .-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888887665 4566 6777777777888888887777665544 11110 113434444445567
Q ss_pred CHHHHHHHHHHHhccCCCC
Q 003531 625 NVELGEKAANRLFELDPDE 643 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~ 643 (812)
+.++|.+-++.+++++|++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 8888888888888888874
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.97 E-value=9.9 Score=40.31 Aligned_cols=149 Identities=16% Similarity=0.011 Sum_probs=84.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC--Ch
Q 003531 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP---NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP--VM 578 (812)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~ 578 (812)
.....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+.. +.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3445688889999999999999999999888744222 2334444555667788889999888877752 1111 11
Q ss_pred hHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDF-IQKMPIEPGITVFGAMLGACKIH------KNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~-~~~~~~~pd~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
.....+...+.. ..+..... .......--..++..+..-+... ++.+.+...|+++.++.|+....+..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111100 00000000 00000000011233333333333 7889999999999999998877777777
Q ss_pred hhhh
Q 003531 652 NIYA 655 (812)
Q Consensus 652 ~~~~ 655 (812)
..+.
T Consensus 300 ~~~~ 303 (352)
T PF02259_consen 300 LFND 303 (352)
T ss_pred HHHH
Confidence 6654
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=6.1 Score=39.46 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
......|++.+|..+|+...+. .| +...-..+..++...|+++.|..++..+-.+. -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 3445677777777777777763 23 23455566677777777777777776654320 01111112234555666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCccchhhHhhhhhhcCCch
Q 003531 594 LNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELD--PDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 594 ~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 661 (812)
..+..++..+..-.| |...-..|...+...|+.+.|...+-.+++.+ -+|...--.|..++...|.-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 666566655554455 44455556666777777777777666666533 334445555555555555444
No 267
>PRK09687 putative lyase; Provisional
Probab=92.75 E-value=13 Score=37.95 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHG-LGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
+..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ +..++...+..++. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444455555555555332223333333444444344444444332 13344444444442 334444445555555
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGA 619 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~ 619 (812)
+.|+. ++...+-...+. ++ .....+.+++.-|.- +|...+.++ .-.||..+-...+.+
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 55552 333333333321 11 122344445555542 344444444 223344444333333
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.37 E-value=0.19 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888889999999999999988885
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.29 E-value=1 Score=44.11 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=81.7
Q ss_pred HHHHHhcC--CCChHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCc-----------
Q 003531 496 RALFDMMN--ERHVTTWNVMIDGYGTH-----GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGL----------- 557 (812)
Q Consensus 496 ~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------- 557 (812)
+..|.... ++|-.+|-+++..+..+ ++.+-....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45666666 67888888888887643 5667777788899999999999999999987644322
Q ss_pred -----HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC-HHHHHHHHHhC
Q 003531 558 -----VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR-LNEAWDFIQKM 604 (812)
Q Consensus 558 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~eA~~~~~~~ 604 (812)
-+=++.++++|.. +|+.||.++-..|+++++|.|. ..+..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2347889999984 5999999999999999999985 34444444334
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.22 E-value=3.3 Score=45.09 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=82.8
Q ss_pred cCChhHH------HHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 186 CGQIEEA------YKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 186 ~g~~~~A------~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
.++++++ .+++..+| ..-.+.+++-+-+.|.++.|+++-++-..
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------------------- 323 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDPDH--------------------------- 323 (443)
T ss_dssp TT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH---------------------------
T ss_pred cCChhhhhhhhhhhhhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCChHH---------------------------
Confidence 4666663 34443333 23367777777778888888877443221
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
-.+...++|+++.|.++-++.. +...|..|.....+.|+++-|.+.|.+..+
T Consensus 324 --------------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------ 375 (443)
T PF04053_consen 324 --------------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------ 375 (443)
T ss_dssp --------------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------
T ss_pred --------------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------
Confidence 1233447788888888776654 556888888888888888888888877543
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIF 398 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (812)
+..++-.+...|+.+.-.++.+.....| -+|.....+.-.|++++..+++
T Consensus 376 ---~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred ---ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555666655555555555444 1333333444445555554444
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.98 E-value=11 Score=39.57 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHhCCChHHHHHHHHhcCCC---Cc----ccHHHHHHHHHH---cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH
Q 003531 383 SMYSKCKKVDRAADIFSKLQGK---TL----VSWNAMILGYAQ---NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL 451 (812)
Q Consensus 383 ~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 451 (812)
-.|-...+++.-.++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.++..||..+...+
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3466666677777777666543 11 111223344555 678888888887765555566666666555443
No 272
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.87 E-value=29 Score=40.01 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=32.5
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccC
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVG 253 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 253 (812)
+...| ++|--+.+.|++++|.++..+... +.......|...+.++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 34456 467778888999999888855543 34556667788888886653
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.60 E-value=1.4 Score=48.76 Aligned_cols=143 Identities=22% Similarity=0.194 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHh----hcCCHHHH
Q 003531 527 VELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM-----DHYGAMVDLLG----RAGRLNEA 597 (812)
Q Consensus 527 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~----~~g~~~eA 597 (812)
.-+|+-++.. ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|...+-.+. .....++|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555552 333 34556666777899999999988876544444322 22333333332 24578999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCC----CccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 598 WDFIQKM-PIEPGITVFGAMLGA-CKIHKNVELGEKAANRLFELDPD----EGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 598 ~~~~~~~-~~~pd~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++++.+ ..-|+...|.-.-+- ++..|+.+.|++.++++++...+ ....+.-+++.+.-.++|++|...+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999 557888888665544 67889999999999998863322 23456788999999999999999999998
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 75
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=15 Score=35.68 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hh---HHHHHHHH
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN---DI---TFLCAISA 551 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~---t~~~ll~a 551 (812)
.++--..+|..+|..+.|-..+++.- -...+-++++|+++|++...- +.-+ .. .+..+-..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhH
Confidence 45556778889998888777766542 123455677777777776542 1111 11 23334445
Q ss_pred HHhcCcHHHHHHHHHHHHHh---cCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKD---YGIEPVM-DHYGAMVDLLGRAGRLNEAWDFIQKM---P--IEP-GITVFGAMLGACK 621 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~---~--~~p-d~~~~~~ll~~~~ 621 (812)
+.+..++++|-..|.+-..- ..--|+. ..|-..|-.+.-..++..|...++.- | ..| |..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 66677777776655432210 0111221 23444555566677899999999884 2 233 5668888888764
Q ss_pred hcCCHHHHHHHHH
Q 003531 622 IHKNVELGEKAAN 634 (812)
Q Consensus 622 ~~g~~~~a~~~~~ 634 (812)
.||.|+...++.
T Consensus 240 -~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 -EGDIEEIKKVLS 251 (308)
T ss_pred -cCCHHHHHHHHc
Confidence 577787777663
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.33 E-value=7.4 Score=39.77 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=66.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHhcCcHHHHHHHHHHH---HHhcCCCCChhHHHH-
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKP-N----DITFLCAISACSHSGLVEEGIHYFTSL---KKDYGIEPVMDHYGA- 583 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~- 583 (812)
|..++.-.+.++++++.|+...+---.. | -..+..|.+.+.+..++++|.-+..+. .+.+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555556666666666655421111 1 224666666666666666666554432 233343332222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 584 ----MVDLLGRAGRLNEAWDFIQKM-------PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 584 ----li~~~~~~g~~~eA~~~~~~~-------~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
|.-+|-..|++-+|.+..++. +-+| -......+...|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223444556665555555443 2222 233455666777777777777777777664
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.05 E-value=0.21 Score=45.23 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=62.7
Q ss_pred HHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHH
Q 003531 143 YLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAEL 222 (812)
Q Consensus 143 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (812)
.+++.+.+.+.......+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777778888888888888877677889999999999999888888888884433 444566777777777777
Q ss_pred HHHHHHHH
Q 003531 223 ALDLVTRM 230 (812)
Q Consensus 223 A~~l~~~m 230 (812)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776654
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.95 E-value=4.5 Score=36.63 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~ 628 (812)
.-...++.+++..++..+. -+.|. .+.-..-+..+.+.|++.+|..+++++ .-.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3355667777777777776 35663 333334455667788888888888887 233444555677777766544444
Q ss_pred HHHHHHHHhccCCC
Q 003531 629 GEKAANRLFELDPD 642 (812)
Q Consensus 629 a~~~~~~~~~~~p~ 642 (812)
=...++++++..|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 45556667776663
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.76 E-value=7.5 Score=37.97 Aligned_cols=260 Identities=15% Similarity=0.203 Sum_probs=149.7
Q ss_pred CCCCChhHHHHHHHHH-HhCCChHHHHHHHHhcCCC-------CcccHHHHHHHHHHcCChHHHHHHHHHHhh---CCCC
Q 003531 370 KLGTDVSMTNSLISMY-SKCKKVDRAADIFSKLQGK-------TLVSWNAMILGYAQNGRVNEALNYFCKMRS---KNIK 438 (812)
Q Consensus 370 g~~~~~~~~~~Li~~y-~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 438 (812)
+.+||+..-|..-+.- .+..++++|..-|+++.+- +..+.-.||..+.+.|++++.++.+.+|.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444332211 2344677888888776532 123445678888889999999888888754 1122
Q ss_pred --CCcccHHhHHHHHhccccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 003531 439 --PDSFTMVSVIPALAELSVIRYAKWIHALVIRS-----CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE------- 504 (812)
Q Consensus 439 --p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~------- 504 (812)
-+..+.++++.-.+...+.+.-..+++.-.+. +-..--.+-+-|...|...|.+.+-.+++.++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23456677777666666666555555443321 1111122334566677777888777777776651
Q ss_pred -CC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHH-----HhcCcHHHHHHHHHHHHH
Q 003531 505 -RH-------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISAC-----SHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 505 -~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~ 570 (812)
.| ...|..-|..|....+-.+-..+|++.+.-. --|. .....++.-| .+.|.+++|..-|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 2367777888888888888888888876522 2233 3344566666 457788887654444444
Q ss_pred hcCCC--CC---hhHHHHHHHHHhhcCC--HHHHHHHHHhC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 003531 571 DYGIE--PV---MDHYGAMVDLLGRAGR--LNEAWDFIQKM-PI--EPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 571 ~~~~~--p~---~~~~~~li~~~~~~g~--~~eA~~~~~~~-~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
.|.-. |. .--|-.|.+++.+.|- ++. +++ |. .|.......|+.+|..+ + +..|+++++.+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~N-d----I~eFE~Il~~~ 329 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQNN-D----IIEFERILKSN 329 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhcc-c----HHHHHHHHHhh
Confidence 44322 21 2235566777777762 111 112 33 34455677888888654 3 34455555543
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.34 E-value=0.38 Score=31.26 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
|..|...|...|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666777777777766544
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=2.2 Score=42.88 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=119.7
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCH
Q 003531 519 THGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA----MVDLLGRAGRL 594 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 594 (812)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... -.||...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5667778888888999999999988888887743 3555544443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----ccchhhHhhhhhhcCCchHHHHHHH
Q 003531 595 NEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDE----GGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 595 ~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
++|++.-++. .+.| |.-.-.+........|+.++|.+..++--..--+. +-.|-+.+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888 6666 55455666777788899999998877654322211 2345577777888899999999998
Q ss_pred HHHHcCCccCCccc
Q 003531 669 IMEKKGLQKTPGCS 682 (812)
Q Consensus 669 ~m~~~g~~~~~~~s 682 (812)
.=.-+.+.|+.+++
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 77666666666644
No 281
>PRK09687 putative lyase; Provisional
Probab=89.46 E-value=27 Score=35.63 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC 552 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 552 (812)
++..+-...+.++++.|+.+....+.+.+..+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3444555556666666664322233333333332 23456666666664 577777766652 34554444444444
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.15 E-value=3.1 Score=36.11 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhc-cCCCC-ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 612 VFGAMLGACKIH---KNVELGEKAANRLFE-LDPDE-GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+--.+.|+.... .+..+++.+++.+++ -.|+. -.....|+-.+++.|+++++.++.+...+.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333445554433 356677888888876 44433 233445666677888888888887777664
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=48 Score=37.88 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 251 (812)
..++..+|+.+.-.|++++|-...-.|...+..-|-.-+.-+...++......+ +.....+.+...|..+|-.+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 456677788888888888888888888777777777777777766665443322 2221122344456666655544
No 284
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.81 E-value=1.3 Score=30.25 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND 542 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (812)
+|..+...|...|++++|.++|++.++ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455666666677777777777777666 34543
No 285
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.58 E-value=45 Score=38.42 Aligned_cols=210 Identities=13% Similarity=0.177 Sum_probs=84.9
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCChhh--HHHH
Q 003531 279 ALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGN-------PEEAMRIFQKMLDQGVEPTNVT--IMEA 346 (812)
Q Consensus 279 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t--~~~l 346 (812)
++|--+.+||++++|.++...... +....+-..+..|..+.+ -++...-|++........|.+- .-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 466677789999999888833332 344556666777766532 2344555665554433235442 2223
Q ss_pred HHHHhccCC--------hHHHHHHHHHHhhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHH
Q 003531 347 LHACADLGD--------LERGIFVHKLLDQLKLGT-----DVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMI 413 (812)
Q Consensus 347 l~a~~~~~~--------~~~a~~i~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 413 (812)
|..|--... .+.=..+.=.+++..... +..++..|-+...+-| .+.|.. ..++.. ..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Yf 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---YF 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------HH
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---HH
Confidence 333322111 122222222222222111 1112211111111111 111211 112222 34
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSC-FEKNVFVMTALIDMYAK---C 489 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k---~ 489 (812)
..+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 456678999999998876 2334566666666665443322222111 2111110 11111346677777775 4
Q ss_pred CCHHHHHHHHHhcC
Q 003531 490 GAVGTARALFDMMN 503 (812)
Q Consensus 490 g~~~~A~~~~~~m~ 503 (812)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67778888776665
No 286
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.53 E-value=21 Score=35.57 Aligned_cols=55 Identities=15% Similarity=-0.082 Sum_probs=50.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+|...|++.+|.++.++++.++|-+...+..|.++|+..|+--+|.+-++++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4688999999999999999999999999999999999999999999888888764
No 287
>PRK10941 hypothetical protein; Provisional
Probab=88.44 E-value=1.9 Score=43.28 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-.--.|-+|.+.|.+..|..-++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35666778899999999999999999999999888888999999999999999988877665
No 288
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.39 E-value=1.8 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred hhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 003531 647 HVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGY 722 (812)
Q Consensus 647 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~ 722 (812)
...|+-.+.+.|++++|.+..+.+.+. +|...+.....+.+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456777889999999999999999875 45555555556667778888773
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.98 E-value=2.5 Score=38.92 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC----chHHHHHHHHHH
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASM----WDKLAKVRTIME 671 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 671 (812)
+++|+.-+++++.++|+...++..++++|...|. -.+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4678888889999999999999999999987754 234445555443
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.94 E-value=3.5 Score=41.34 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCChhHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE-----GPTKPNDITFL 546 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 546 (812)
..++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566777888888888888888877763 3566888888888888888888888887755 45555544443
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.78 E-value=71 Score=38.49 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=38.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 594 (812)
.-+...+.+++|.-+|+..-+. --.+.++...|+|++++.+..++.. +-.--..+--.|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccc
Confidence 3334445555555555443221 1234556666666666665554431 1111122224455555566666
Q ss_pred HHHHHHHHhC
Q 003531 595 NEAWDFIQKM 604 (812)
Q Consensus 595 ~eA~~~~~~~ 604 (812)
-||-++..+.
T Consensus 1016 ~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1016 YEAAKILLEY 1025 (1265)
T ss_pred hhHHHHHHHH
Confidence 6666665554
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.77 E-value=34 Score=34.83 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=10.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 003531 516 GYGTHGLGKAAVELFNKMLEG 536 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~ 536 (812)
.+.+.++.+++.+.+.+|+..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhccCChhHHHHHHHHHHHh
Confidence 333345555555555555553
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.73 E-value=1.2 Score=28.28 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (812)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777776 4453
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.73 E-value=72 Score=38.46 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc--HHhHHHHHhccccHH
Q 003531 381 LISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT--MVSVIPALAELSVIR 458 (812)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~ 458 (812)
-.-+|.++|+.++|.+. |..+|++.+|+.+-.+|... -|... -..|..-+...+..-
T Consensus 958 Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 34467788888887654 44567888888887776431 12211 123444444455444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003531 459 YAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH 506 (812)
Q Consensus 459 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~ 506 (812)
+|-++..+... . ..-.+..|++...+++|.++-......|
T Consensus 1017 eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred hHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 44444333221 1 1233556777777777777766554433
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.68 E-value=1.4 Score=44.38 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=63.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAG 592 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 592 (812)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..-....... -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 5679999999999999999888 677 9999999999999999998888766655421 123455666654
Q ss_pred -------CHHHHHHHHHhC-CCCCCHH
Q 003531 593 -------RLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 593 -------~~~eA~~~~~~~-~~~pd~~ 611 (812)
+++||.+-.+.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 455555444443 5677643
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.54 E-value=5.4 Score=40.03 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHH----hcCCCCChhHH
Q 003531 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKK----DYGIEPVMDHY 581 (812)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 581 (812)
..++..++..+...|+++.+.+.+++++.. .| |...|..++.+|...|+...|+..|+.+.+ +.|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 346677888888889999999999999884 44 678899999999999999999988888765 34666665555
Q ss_pred HHHHHH
Q 003531 582 GAMVDL 587 (812)
Q Consensus 582 ~~li~~ 587 (812)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.45 E-value=1.2 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666643
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.45 E-value=15 Score=38.86 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDP----DEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 609 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...+|..+...++++|+++.|...+.++...++ ..+.....-+.+.+..|+.++|....+...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999998663 24566777799999999999999988877763
No 299
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.35 E-value=1.3 Score=46.95 Aligned_cols=87 Identities=17% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHH
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEPGITVFGAML-GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKL 663 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 663 (812)
+-+.+.+.++.|..++.++ .+.|+.+++.+.= .++.+.+++..|+.-+.++++++|...-.|+.-+.++.+.+.+.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 4445667778888887776 6788766554443 6788889999999999999999999888999999999999999999
Q ss_pred HHHHHHHHH
Q 003531 664 AKVRTIMEK 672 (812)
Q Consensus 664 ~~~~~~m~~ 672 (812)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888876554
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=16 Score=35.18 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=17.8
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
.+.+++.+|+.+|+++....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 356788999999998877555443
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.10 E-value=60 Score=36.90 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=91.2
Q ss_pred CHHHHHHHHHhcCCC-ChHHHHHHHHHH----HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHH
Q 003531 491 AVGTARALFDMMNER-HVTTWNVMIDGY----GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYF 565 (812)
Q Consensus 491 ~~~~A~~~~~~m~~~-~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 565 (812)
+...|.++|....+. .+.+.-.+...| ....+.+.|..++++.-+.| .|-..--...+..+.. +.++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 455666666655532 222222222222 13346777777777777766 3332222333334444 5566555555
Q ss_pred HHHHHhcCCCCChhHHHHHHHHH-----hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 003531 566 TSLKKDYGIEPVMDHYGAMVDLL-----GR--AGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH----KNVELGEKAAN 634 (812)
Q Consensus 566 ~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~----g~~~~a~~~~~ 634 (812)
..+... |.+--...-..+.+.. .+ ..+.+.+..++.+...+-+......|...|..- .+.+.|...+.
T Consensus 421 ~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 444432 3322111111111111 11 225566777777764444555555555554432 36778888887
Q ss_pred HHhccCCCCccchhhHhhhhhh----cCCchHHHHHHHHHHHc
Q 003531 635 RLFELDPDEGGYHVLLANIYAA----ASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 635 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 673 (812)
++-+.. +.....|+.++-. .. +..|.++++...+.
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 777665 5566777777732 23 67888888877664
No 302
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.07 E-value=1.7 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34557899999999999999999999987544
No 303
>PRK12798 chemotaxis protein; Reviewed
Probab=86.88 E-value=46 Score=35.33 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=134.3
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCcHH
Q 003531 489 CGAVGTARALFDMMNE----RHVTTWNVMIDGY-GTHGLGKAAVELFNKMLEGPTKPN----DITFLCAISACSHSGLVE 559 (812)
Q Consensus 489 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 559 (812)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..- .-|- +....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999988873 4456777777664 456789999999999876 4553 234444555678899999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHH-HHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYG-AMVDLLGRAG---RLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
++..+-....+.|...|-...|. -++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888777777777777443333 2333443333 4445555666663122345787888888899999999999999
Q ss_pred HhccCCCCccchhhHhhhhhhc-----CCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 003531 636 LFELDPDEGGYHVLLANIYAAA-----SMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFL 710 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l 710 (812)
+..+.+. ...-...+.+|... ...+++.+....+-. +..+|.-..+.+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHHH
Confidence 9998743 33334444555332 335555544433322 23367777777666
Q ss_pred HHHHHHHHHc
Q 003531 711 ETLIDEIKAA 720 (812)
Q Consensus 711 ~~l~~~m~~~ 720 (812)
..+-.++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 7777776654
No 304
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.88 E-value=1.1e+02 Score=39.88 Aligned_cols=309 Identities=13% Similarity=0.081 Sum_probs=160.2
Q ss_pred HHHHhccCChHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHh-cCCCCcccHHHHHHHHHHcCChH
Q 003531 347 LHACADLGDLERGIFVHKLLDQLKL--GTDVSMTNSLISMYSKCKKVDRAADIFSK-LQGKTLVSWNAMILGYAQNGRVN 423 (812)
Q Consensus 347 l~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 423 (812)
..+..+.+.+.+|...++.-..... ......+-.+...|+..+++|...-+... ...+ +...-|.-....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 3344555666666666555210000 11122333444577777777776666552 2222 2333455566778888
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 003531 424 EALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTAL-IDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 424 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~~y~k~g~~~~A~~~~~~ 501 (812)
.|..-|+++.+.+ |+ ..+++.++..-...+.++......+..... ..+...-++.+ +.+-=+.++++.-.....
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8999998888753 44 667777777666666666655433333222 12222222222 233345555555555544
Q ss_pred cCCCChHHHHHH-HH-HHHhC--CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH----------
Q 003531 502 MNERHVTTWNVM-ID-GYGTH--GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTS---------- 567 (812)
Q Consensus 502 m~~~~~~~~~~l-i~-~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---------- 567 (812)
..+..+|.+. +. ...+. .+.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455556554 22 22111 11111112333332211111 2233333322222222111
Q ss_pred HHHhcCCCCChhHHH-H--HHHHHhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 003531 568 LKKDYGIEPVMDHYG-A--MVDLLGRAGRLNEAWDFIQKM-------PIEPG-----ITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 568 m~~~~~~~p~~~~~~-~--li~~~~~~g~~~eA~~~~~~~-------~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
.....+..++..+.+ . ...-+.+.+....+.+-+-.+ ...|+ ..+|......++..|.++.|..+
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111113333211111 0 111222222222233322211 12322 34899999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.-++.+..+ +.++.-.+...+..|+-..|..+.+...++.
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999888875 7889999999999999999999999888764
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.61 E-value=17 Score=33.46 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 003531 124 SFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLD-LFAMTGVVNMYAKCGQIEEAYKMFDRMPER 202 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 202 (812)
+.++.+.+.+++|+...+..+++.+.+.|.+..-. +++..++-+| ..+...|++.- +....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44556667778888888888888888888765433 3344444344 33333333322 1222333332233322
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHH
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR 267 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 267 (812)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234667778888888888888887765322 223334556666666665555555555444
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.47 E-value=41 Score=34.31 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-C--ChHHHHHHHHHH---HhCCCHHHHHHHHHHHHhCCCCCCh
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNE-R--HVTTWNVMIDGY---GTHGLGKAAVELFNKMLEGPTKPND 542 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (812)
.-++...+.++.+++.+++.+|.. . ....+...+..+ .. .....|...+.+++...+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 334555556677777777776652 1 223444444443 33 2345666666666665555544
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.39 E-value=7.3 Score=36.53 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777888888888888887776432 23566667777777777777776666554
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.35 E-value=2.6 Score=39.71 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=47.4
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~ 630 (812)
..|.+.-|+--|.... .+.|+ +.+||.|+--+...|+++.|.+.|+.. .+.|. ..+...-+-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3444444554444433 45553 456666666666666666666666665 44442 112222222334456667777
Q ss_pred HHHHHHhccCCCCc
Q 003531 631 KAANRLFELDPDEG 644 (812)
Q Consensus 631 ~~~~~~~~~~p~~~ 644 (812)
+-+.+..+-+|+||
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 66666666666655
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.32 E-value=79 Score=36.55 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHhccC---CCCcc-ch-----hhHhhhhhhcCCchHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELD---PDEGG-YH-----VLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.|+..+........+.+- ||... .+ ..+.+.|...|+.++|...+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 566666555555454422 22221 12 245555677788888877776553
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.23 E-value=20 Score=36.79 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC---cHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 524 KAAVELFNKMLEGPTKPN-DITFLCAISACSHSG---LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
+.+..+|+.+.+.|+..+ ..-+.+-+-++.... .+..+.++++.+.+. |+++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 456677777877777764 333444333332221 145677788888766 888877777766543
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.79 E-value=2.2 Score=38.55 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+++.+.++.++.-+--+.|..++.-..-++++...|+|.+|.++++.+.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444455555555554444433
No 312
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.79 E-value=83 Score=36.40 Aligned_cols=116 Identities=7% Similarity=0.010 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 003531 520 HGLGKAAVELFNKMLEG-PTKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE 596 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 596 (812)
..+.+.|..++.+.... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888876443 2333322 2333332223332255666666554321 1233444444555558888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhc
Q 003531 597 AWDFIQKMPIE-PGITVFGA-MLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 597 A~~~~~~~~~~-pd~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+...|..|+-. -+..-|.- +..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888311 11222222 33444557888888888888743
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.35 E-value=35 Score=32.10 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCCCCChhHH--HHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITF--LCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA-----MVDLLGRAGRLNEA 597 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 597 (812)
+.....+++....-+....++ ..+..++...|++++|...++..... |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445555555553211111122 22345667788888888877765522 32233333 44567788999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 598 WDFIQKMPIEP--GITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 598 ~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
+..++... .+ ....-..-+..+...|+.++|+..|+++++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988763 12 12223334566888899999999999999887643
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.33 E-value=2.6 Score=37.44 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 622 IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
..++.++++.++..+--+.|+.++.-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777778888877777888888887788888888888888888887776654
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.24 E-value=1.1 Score=28.62 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=14.0
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHH
Q 003531 575 EP-VMDHYGAMVDLLGRAGRLNEAW 598 (812)
Q Consensus 575 ~p-~~~~~~~li~~~~~~g~~~eA~ 598 (812)
.| +...|..|+..|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44 4556666666666666666554
No 316
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.97 E-value=0.69 Score=46.66 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
.|.+++|.+.+... ++.|. ...+..-.+++.+.+....|++-+..+++++||...-|-.-+.+....|.|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46677777777665 44553 33444555667777888888888888888998888888888888888899999888888
Q ss_pred HHHHcCCcc
Q 003531 669 IMEKKGLQK 677 (812)
Q Consensus 669 ~m~~~g~~~ 677 (812)
...+.++..
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 888777653
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.58 E-value=36 Score=31.25 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=71.9
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh-HHHH--HHHHHhhcC
Q 003531 517 YGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD-HYGA--MVDLLGRAG 592 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~--li~~~~~~g 592 (812)
+++.|..++|+.-|.++.+.|...=++ .-.-........|+..+|...|+++-++ .-.|.+. -..- -..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456777888888888888766543222 2222333457788888888888887755 2223211 1111 123455677
Q ss_pred CHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 593 RLNEAWDFIQKMP--IEP-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 593 ~~~eA~~~~~~~~--~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
.+++.....+-+. -.| -...-.+|.-+-.+.|++..|.+.|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777776662 222 223445566666677777777777776654
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.48 E-value=18 Score=33.09 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=31.9
Q ss_pred HhCCChHHHHHHHHhcCCCCcccHHHHH-----HHHHHcCChHHHHHHHHHHhhCC
Q 003531 386 SKCKKVDRAADIFSKLQGKTLVSWNAMI-----LGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 386 ~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
++.+..++|..-|..+.+.+--+|-.|. ....+.|+...|...|.+.-...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 4556667777777776665554444332 34566777777777777776543
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.95 E-value=83 Score=34.96 Aligned_cols=128 Identities=10% Similarity=0.120 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcch-HHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 003531 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYN-YTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVN 181 (812)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 181 (812)
...|+.+|..--.....+.+...+..+... -|..+- |.....-=.+.|..+.+..+|++.+.. ++.++..|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 345766666555554555555566666532 243332 222222223566777777777776643 5566667766666
Q ss_pred HHHh-cCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 182 MYAK-CGQIEEAYKMFDRMPE------RDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 182 ~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
.... .|+.+..++.|+.... ....-|...|.--..++++.....+|++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5543 4666676677766543 33445777777777777788888888877763
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.88 E-value=11 Score=37.95 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-ERH--------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (812)
|...+..+...++..-....+++++...+-++. +|+ ..+|-.++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 444455555666666666778888888887776 222 334444333 3367799999999999999999
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 571 (812)
..|+..++..+.+.+++.+|.++...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998887776643
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.86 E-value=2.4 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566667777788888888888888877774
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.85 E-value=16 Score=34.33 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh------hH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM------DH 580 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~ 580 (812)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+......-..|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 67778889999999999999999999876666543 56778888899999999888887776432211122 22
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
|..|. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23467888887777665
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.84 E-value=2.8 Score=26.38 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.67 E-value=2.4 Score=28.21 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.55 E-value=55 Score=33.62 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh--cC----cHHHHHHHHHHHHHhcCCCC--ChhHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPNDITFLCAISACSH--SG----LVEEGIHYFTSLKKDYGIEP--VMDHYGAM 584 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 584 (812)
+++.+.+++.|.+.|++-+..+|.+....... .. ....|..+|+.|++++.+-- +-..+..|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence 34557788999999999988887764433332 22 35678899999998866533 33444444
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.50 E-value=13 Score=34.27 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
+++|...|+++.+.+|++..+...|- +. ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-MA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-HH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-HH------HhhHHHHHHHHHHHhh
Confidence 57788999999999998755444332 22 4577777777776654
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.34 E-value=54 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=35.8
Q ss_pred hhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HHHhc-CCHHHHHHHHHHHhccCCCCcc
Q 003531 589 GRAGRLNEAWDFIQKM---PIEPGITVFGA---MLG--ACKIH-KNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~---~~~pd~~~~~~---ll~--~~~~~-g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
+..|++.+|.++|++. .+..+..-|.. ++. .|... .|.-.+..++++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4567777788887766 23333333322 222 24444 6778888999999999996544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.32 E-value=20 Score=39.44 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred hCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 003531 286 KCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKL 365 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 365 (812)
+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 557777777765443 4566788888888888999888888887654 45566666666666655555444
Q ss_pred HhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHh
Q 003531 366 LDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSK 400 (812)
Q Consensus 366 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 400 (812)
..+.|. .|.-.-+|...|+++++.+++-+
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 444442 12223344555666665555543
No 329
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.27 E-value=36 Score=29.69 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 571 (812)
..-+......|+-++--+++.++.+. -+|++....-+..||.+.|+..++.+++.+.-+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33455556666666666666666542 3556666666666777777777766666666543
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.15 E-value=4.7 Score=38.02 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-C---CccchhhHhhhhhhcCCchHH
Q 003531 590 RAGRLNEAWDFIQKMPIEP--GITVFGAMLGACKIHKNVELGEKAANRLFELDP-D---EGGYHVLLANIYAAASMWDKL 663 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~g~~~~a 663 (812)
|.|+ ++|++.|-++.-.| +....-.-+..|....|.++++.++-+++++.+ + |+..+..|+.+|.+.|++++|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4443 56666666663233 334445556667777888999999998888643 2 467888899999999888887
Q ss_pred H
Q 003531 664 A 664 (812)
Q Consensus 664 ~ 664 (812)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.01 E-value=2.6 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566667777777777777776664
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.96 E-value=25 Score=31.44 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=43.2
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
..++.+++..+++.|. -+.|+ .+.-..-+-.+.+.|+++||..++++..-.+ ....-..|+..|.....-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3666777777777665 34552 2333333445567777777777777773222 33333445544544322222233
Q ss_pred HHHHHhccCC
Q 003531 632 AANRLFELDP 641 (812)
Q Consensus 632 ~~~~~~~~~p 641 (812)
.+.++++-++
T Consensus 99 ~A~~~le~~~ 108 (153)
T TIGR02561 99 HADEVLARDA 108 (153)
T ss_pred HHHHHHHhCC
Confidence 3344444433
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.87 E-value=22 Score=29.24 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCCCChhHHHHHHHHHHhcCCchHHHHHHHHhHhC
Q 003531 53 LKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYD 132 (812)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 132 (812)
-++|.-|-+-+...+-. ...+...-++.+...|++++|..+.+..+.||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554422 12222244556779999999999999999999999988765 3566667666667777776
Q ss_pred CCCCCcchHHH
Q 003531 133 DVAPVVYNYTY 143 (812)
Q Consensus 133 g~~p~~~t~~~ 143 (812)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 334
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.96 E-value=1e+02 Score=32.95 Aligned_cols=69 Identities=9% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCchHHH-HHHHHhhcCCChhHHHHhhccCCCCC---hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCc
Q 003531 70 DQHLFQT-KLVSLFCKYNSLSDAARVFEPIPDKL---DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVV 138 (812)
Q Consensus 70 ~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 138 (812)
|.+...+ .||.-|...|..++.++++++|..|- ...|..-|++=....++.....+|.+.....+..|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 3567777 99999999999999999999998764 346988898888888999999999998876555444
No 335
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.64 E-value=6.5 Score=38.14 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHhccCC------CCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 610 ITVFGAMLGACKIHKNVE-------LGEKAANRLFELDP------DEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 610 ~~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..++.-+.|.|+..|+.+ .|...|+++++.+. ++.....++|.++.+.|+.++|.+.+.++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 346667778888888854 45555555555432 22456778999999999999999999998865
No 336
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.33 E-value=60 Score=29.93 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHH
Q 003531 279 ALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKML 332 (812)
Q Consensus 279 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 332 (812)
.+++.+...|++-+|.+..+....-+.+....++.+-.+.++...-..+|+-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666666666665544444444555555555555444444444433
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.14 E-value=26 Score=38.66 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 489 CGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 489 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
.|+++.|..++..++++ .-+.++.-+...|..++|+++ .+|+. -|-. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 47777777777666632 334555666677777777663 33322 2332 2366888888776544
Q ss_pred HHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch
Q 003531 568 LKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 568 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 647 (812)
.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+-+.-..+....-+..-+|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 32 44568888888888999988888887763 356666677777776655555554444444332
Q ss_pred hhHhhhhhhcCCchHHHHHHHH
Q 003531 648 VLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 648 ~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
--..|...|++++..++...
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHh
Confidence 22456788888888877643
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.07 E-value=1.2e+02 Score=33.14 Aligned_cols=190 Identities=9% Similarity=0.082 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC 552 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 552 (812)
|....-++++.++..-+..-.+.+..+|. ..+-..+..++..|.++ ..++-..+|+++.+ ..-|.+.+.-.+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 33334455555555555555555555554 24445566666666666 44556666666666 333444444444444
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEPV------MDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPGITVFGAMLGACKI 622 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~pd~~~~~~ll~~~~~ 622 (812)
...++.+.+..+|.++.-. +.|. .+.|.-|+... ..+.+.-+.+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4446666666666665532 3331 12343333322 12334444444333 212222333333334555
Q ss_pred cCCHHHHHHHHHHHhccCCCCc--------------------cchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELDPDEG--------------------GYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~--------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
..|+.+|+++...+++.+..|. +-|...+++-..-.++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 5666666666666655554332 233344444444555666666555543
No 339
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.03 E-value=23 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 586 (812)
+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666777777889999999999999999999999999998887644 33337777654
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.98 E-value=22 Score=28.99 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 003531 522 LGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586 (812)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 586 (812)
+.-++.+-++.+....+-|++....+.|.||.+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666777777778999999999999999999999999999988755333 4456666654
No 341
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=24 Score=34.27 Aligned_cols=89 Identities=13% Similarity=-0.015 Sum_probs=62.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHHH--------HH---HHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 585 VDLLGRAGRLNEAWDFIQKM---------PIEPGITVFGAM--------LG---ACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~---------~~~pd~~~~~~l--------l~---~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
++-+.+.|+++||..-+.++ ..+|...-|--| ++ .+...|++-++++...+++..+|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 44555666666666555443 335544444322 22 23456899999999999999999999
Q ss_pred cchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 645 GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+|+.-+.+.+..=+.++|..-+....+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999998888777777888877777664
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.92 E-value=33 Score=28.20 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHH
Q 003531 281 VDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIM 344 (812)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 344 (812)
+..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+..|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445678999999999999999999999888665 6677777777777777765 44444443
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.89 E-value=3.8 Score=25.82 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
+|..+...|.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777777665
No 344
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.34 E-value=1.9e+02 Score=35.25 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=72.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..+. -.+|...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3445555555555443211 12234444556666655556666655544321 11222 2345444455555555
Q ss_pred hcCcHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003531 554 HSGLVEE-GIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 554 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
..+..+. +...+..+.+ .++...-...+..+++.|.-+.+...+..+-..+|..+-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2333333332 355666666677777777655443333333224555555555555555554 344444
Q ss_pred HHHHh
Q 003531 633 ANRLF 637 (812)
Q Consensus 633 ~~~~~ 637 (812)
+..++
T Consensus 843 L~~~L 847 (897)
T PRK13800 843 LVEAL 847 (897)
T ss_pred HHHHh
Confidence 44444
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.24 E-value=6 Score=26.17 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.+++.|...|...|++++|+.++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666777777666666544
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.24 E-value=1.8 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=16.3
Q ss_pred chhhHhhhhhhcCCchHHHHHHH
Q 003531 646 YHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
....|+.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777654
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.21 E-value=25 Score=33.28 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhhcCCHHHHH
Q 003531 524 KAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGI--EPVMDHYGAMVDLLGRAGRLNEAW 598 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~eA~ 598 (812)
++|++.|-++...+.--+... ...+..|....+.+++++++....+.+.- .+|++.+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~el-q~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAEL-QYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHH-HHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466666666666553333333 33333444456666676666665543322 345666666666666666666654
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.65 E-value=1.2e+02 Score=34.47 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=85.7
Q ss_pred HHhCCCHHHHHHHHHHHHh-------CCCCCChhHHHHHHHHHHhcC-----cHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 003531 517 YGTHGLGKAAVELFNKMLE-------GPTKPNDITFLCAISACSHSG-----LVEEGIHYFTSLKKDYGIEPVMDHYGAM 584 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l 584 (812)
+....+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++...... | .|+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHH
Confidence 3344566666666666655 44 2234444555555532 455677777666532 2 2333333222
Q ss_pred HHHHhh-cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhc-C
Q 003531 585 VDLLGR-AGRLNEAWDFIQKMP--IEPGITVFGAMLGACK--IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA-S 658 (812)
Q Consensus 585 i~~~~~-~g~~~eA~~~~~~~~--~~pd~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 658 (812)
....+. ..+...|.++|..+. -.++...|.++.-..- ...+.+.|...++++-+.++ +.+...++..+.-. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccc
Confidence 222222 235677888887772 2233333322222211 23478889999999988873 44455555544333 8
Q ss_pred CchHHHHHHHHHHHcCCccC
Q 003531 659 MWDKLAKVRTIMEKKGLQKT 678 (812)
Q Consensus 659 ~~~~a~~~~~~m~~~g~~~~ 678 (812)
+++.+.-.+..+.+.|.+..
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVA 431 (552)
T ss_pred cccHHHHHHHHHHHhhhhHH
Confidence 88888888888888776543
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=19 Score=36.32 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=66.8
Q ss_pred CCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC-------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChh
Q 003531 269 GFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS-------RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV 341 (812)
Q Consensus 269 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 341 (812)
|.+....+...++..-....+++++...+-++.. ++... .+.++. +-.-++++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 4444555556666666666778888777766653 22111 122222 23346778888888888888889988
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcC
Q 003531 342 TIMEALHACADLGDLERGIFVHKLLDQLK 370 (812)
Q Consensus 342 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 370 (812)
|+..+|+.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888887777666553
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.30 E-value=28 Score=37.10 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=77.1
Q ss_pred hCCCHHHHH-HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 003531 519 THGLGKAAV-ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 519 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 597 (812)
..|+...|- ++|.-+....-.|+.+...+.+ ..+.|.++.+.+.+....+. +.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 346655554 3455555544456655544443 57788888888877766532 334556777888888888888888
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 598 WDFIQKM---PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 598 ~~~~~~~---~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
..+-..| .++ ++.+...-...-.+.|-++++...+++++.++|.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777 222 3333333334455667788888888888888763
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.95 E-value=1.4e+02 Score=31.70 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=62.1
Q ss_pred ChhHHHHH---HHHHHhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--------
Q 003531 541 NDITFLCA---ISACSHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLG-RAGRLNEAWDFIQKMPI-------- 606 (812)
Q Consensus 541 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~-~~g~~~eA~~~~~~~~~-------- 606 (812)
|..-|.++ +..+.+.|-+..|.++.+-+. .++| |+...-.+||.|+ |+++++--.++++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 44444443 456688888999988887776 4566 5566666788876 78888877777776521
Q ss_pred -CCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHhccCC
Q 003531 607 -EPGITVFGAMLGACKIHKNV---------------ELGEKAANRLFELDP 641 (812)
Q Consensus 607 -~pd~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p 641 (812)
-|+ ..+..-+. +...++. +.|...+++++..-|
T Consensus 176 ~lPn-~a~S~aLA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPN-FAFSIALA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCcc-HHHHHHHH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 122 22333333 3334444 889999999988888
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.83 E-value=30 Score=32.49 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKPN-----DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG 589 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 589 (812)
.-+..+|++++|..-|.+.+.. ++|. .+.|..-..+..+.+.++.|+.-..+.+ .+.|+ |.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pt---y~------- 168 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPT---YE------- 168 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCch---hH-------
Confidence 3466778888888888777773 2222 1223333334455555555554433333 22231 11
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 590 RAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
-...--..+|-+...++.|+.-|+++++++|..
T Consensus 169 ---------------------kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 169 ---------------------KALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred ---------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 011111234666677899999999999999964
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.83 E-value=2.6 Score=37.94 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=54.7
Q ss_pred HHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHH
Q 003531 346 ALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEA 425 (812)
Q Consensus 346 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 425 (812)
++..+.+.+.......+++.+.+.+...+....+.|+..|++.+..+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666666666556777888888888888877777777763332 3334566666777777777
Q ss_pred HHHHHHHh
Q 003531 426 LNYFCKMR 433 (812)
Q Consensus 426 ~~~~~~m~ 433 (812)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77766653
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=71.58 E-value=48 Score=36.48 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C-CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003531 480 TALIDMYAKCGAVGTARALFDMMN-E-RHVT---TWNVMIDGYGTHGLGKAAVELFNKMLEG 536 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~-~-~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (812)
..|+.-|.+++++++|..++..|. . -... +.+.+.+.+.+..-..+....++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 356778999999999999999997 1 1222 3344444444544444555555555543
No 355
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.30 E-value=9.8 Score=43.53 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWD 599 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 599 (812)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|+++.+.=...++ +...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHHH
Confidence 456666666555443322 2345555677777777776554333322 2346899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 600 FIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 600 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.-++.. |..+|..|+..-..+||.+.|+..|++.-.. ..|+-+|.-.|+.++-.++-+.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHHHH
Confidence 888774 7788999999999999999999999876443 33445566666666555444433
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.80 E-value=21 Score=29.20 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.5
Q ss_pred hHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHH-HhCCCCChhHHHHHHH
Q 003531 120 DDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLI-VNGFSLDLFAMTGVVN 181 (812)
Q Consensus 120 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~-~~g~~~~~~~~~~Li~ 181 (812)
-++.+-+..+....+.|++....+.|++|-+.+|+..|.++++-+. +.|. +...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3555666777777888999999999999999999999999998776 4442 3445555544
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.63 E-value=2.7 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=24.8
Q ss_pred chhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 646 YHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999875
No 358
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.70 E-value=94 Score=30.49 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=60.2
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 510 WNVMIDGY--GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 510 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
|...+.|+ ..++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+.- .-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 44455554 3567777777766321 12222221 356666667888888888776541 11233334444444
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003531 588 LGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHK 624 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g 624 (812)
..+|.+.||+.+.+..+-.-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556888888888877642212346777777666444
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.66 E-value=1.4e+02 Score=30.59 Aligned_cols=47 Identities=9% Similarity=-0.063 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC---------------CchHHHHHHHHHHHcC
Q 003531 625 NVELGEKAANRLFELDPDEGGYHVLLANIYAAAS---------------MWDKLAKVRTIMEKKG 674 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g 674 (812)
|.++|...|+++-+... ......++ ++...| ++..|...+...-..|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 66777777777766665 34444444 444333 5556666666555543
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.36 E-value=8.8 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 003531 582 GAMVDLLGRAGRLNEAWDFIQ 602 (812)
Q Consensus 582 ~~li~~~~~~g~~~eA~~~~~ 602 (812)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555556666666655543
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.27 E-value=1.8e+02 Score=31.52 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=68.2
Q ss_pred HhCCCCCCcch--HHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHhccCCCC---
Q 003531 130 RYDDVAPVVYN--YTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLF--AMTGVVNMYAKCGQIEEAYKMFDRMPER--- 202 (812)
Q Consensus 130 ~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~--- 202 (812)
.+.|..|+... ..+.|..++..|+.+. .+.+++.|..++.. .....+...++.|+.+.+..+++.-...
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 97 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV 97 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence 34455554322 2334444455566543 33344455443321 1122344455667777776666644321
Q ss_pred -CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcch--HHhHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HH
Q 003531 203 -DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFIT--IVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVN--VS 277 (812)
Q Consensus 203 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~ 277 (812)
+...++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+..+.+ ++.|..++.. ..
T Consensus 98 ~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g 168 (413)
T PHA02875 98 FYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCG 168 (413)
T ss_pred ccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCC
Confidence 1111222 2333344544 34455555666554322 12233334445555443333 3344332211 11
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCC
Q 003531 278 TALVDMYAKCGRVETARLVFDGMKS 302 (812)
Q Consensus 278 ~~li~~y~~~g~~~~A~~~f~~m~~ 302 (812)
.+-+...+..|..+-+..+++.-..
T Consensus 169 ~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 169 CTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 1222333444555555555544333
No 362
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.85 E-value=63 Score=36.71 Aligned_cols=183 Identities=17% Similarity=0.278 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhCC----C--CCC-cccHHhHHHHHhccccHHHHHHHHHHHHHh-C-CCCchhHH
Q 003531 409 WNAMILGYAQNGRVNEALNYFCKMRSKN----I--KPD-SFTMVSVIPALAELSVIRYAKWIHALVIRS-C-FEKNVFVM 479 (812)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~ 479 (812)
-..++-.|-...+++..+++.+.+..-- + .++ .+.|.-.++---+-|+-++|..+.--+++. | +.|
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap----- 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP----- 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-----
Confidence 3445556666667777777777766521 0 011 123433444444556667776665555443 2 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh---HHHHHHHHHHhcC
Q 003531 480 TALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI---TFLCAISACSHSG 556 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g 556 (812)
++||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-.+.
T Consensus 279 ----Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~- 336 (1226)
T KOG4279|consen 279 ----DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH- 336 (1226)
T ss_pred ----ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh-
Confidence 346667753 33331 22345566777889999998887 778644 355555443221
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRL 636 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 636 (812)
++...+ |. .+-..|..+++|.|.++.-.++++-. ..+.+-...+|+.+|.++++.+
T Consensus 337 -Fens~E----lq---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 337 -FENSLE----LQ---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred -ccchHH----HH---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHH
Confidence 111111 11 12223556788999999888877532 3355666678999999999999
Q ss_pred hccCCC
Q 003531 637 FELDPD 642 (812)
Q Consensus 637 ~~~~p~ 642 (812)
+++.|-
T Consensus 393 fKLk~P 398 (1226)
T KOG4279|consen 393 FKLKPP 398 (1226)
T ss_pred hccCCc
Confidence 999983
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.69 E-value=45 Score=35.67 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=90.9
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
..|++-.|-+-+....+.+.-.|+. .-.........|.++.|...+... -+.....+...++......|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3566666655444444444445543 333445567889999999999877 233455677888888889999999999
Q ss_pred HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEE
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVEL 686 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 686 (812)
.++-++.-+-+++++...-+..-...|-+|++.-.|++........+ ..|+..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~--~g~v~~ 431 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ--SGWVNF 431 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc--ccceee
Confidence 99999987777777766666666778999999999998876544333 345543
No 364
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=20 Score=36.41 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC--C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM--P--IEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~--~--~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
+.+|.-=++-|.+..++..|...+.+. . -.|| .+.|+.-..+-...||+..|+.-..+++.++|.+.-.|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 455656677788899999999998776 1 2343 456666666666779999999999999999999999888888
Q ss_pred hhhhhcCCchHHHHHHHHH
Q 003531 652 NIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 652 ~~~~~~g~~~~a~~~~~~m 670 (812)
.++....++++|..+.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888877777766554
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.69 E-value=11 Score=24.43 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHhccCCCC
Q 003531 612 VFGAMLGACKIHKNVELGEKA--ANRLFELDPDE 643 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 643 (812)
.|-++...+...|++++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 356677778888899999988 44777776653
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.26 E-value=16 Score=34.73 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
.+.-+..+.+.+++++|+.+.+.- .-+| |...-..|...++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344456777888888888876554 4566 555666777888888999998888888888888654
No 367
>PRK10941 hypothetical protein; Provisional
Probab=65.52 E-value=25 Score=35.39 Aligned_cols=66 Identities=8% Similarity=-0.034 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+.+-..|.+.++++.|+...+.+ .+.| |+.-|.--+-.|.+.|....|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344566778888888888888887 5566 56678888888999999999999999999999988755
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.92 E-value=16 Score=39.98 Aligned_cols=98 Identities=16% Similarity=0.062 Sum_probs=67.7
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PI-EPGITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~ 628 (812)
.-.|+...|...+.... ...| .-.....|...+.+.|...+|-.++.+. .+ ...+.++.+++.++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44567777776655544 3444 2233445667777777777787777654 22 3356678888889998999999
Q ss_pred HHHHHHHHhccCCCCccchhhHhhh
Q 003531 629 GEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 629 a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
|++.++++++++|+++..-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999888775555444
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.89 E-value=1.8e+02 Score=29.48 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCchhHHHHHHHHHhCCChhH
Q 003531 271 DSIVNVSTALVDMYAKCGRVETARLVFDGMKS-----RNVVSWNSMIAAYVEGGNPEE 323 (812)
Q Consensus 271 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~ 323 (812)
.++..+....+..+++.+++..-.++++.... .|...|..+|..-...|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 34444445555555555555555555544322 355566666666666666543
No 370
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.90 E-value=2.5e+02 Score=30.82 Aligned_cols=156 Identities=10% Similarity=0.086 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA 487 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 487 (812)
..-+++..+.++-...-...+..+|..-| -+...|..++..+... ..+.-..+|+++.+..+. |++...-|++.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 45567777777777777778888888744 4566777778777776 566677788888877654 5555667777777
Q ss_pred hcCCHHHHHHHHHhcCC------CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHhcCc
Q 003531 488 KCGAVGTARALFDMMNE------RHV---TTWNVMIDGYGTHGLGKAAVELFNKMLE-GPTKPNDITFLCAISACSHSGL 557 (812)
Q Consensus 488 k~g~~~~A~~~~~~m~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 557 (812)
+ ++.+.+..+|.++.. .+. ..|.-++..- ..+.+.-+.+..+... .|..--.+.+--+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 7 888888888877652 111 1455554421 2344555555555543 2222334445555556677777
Q ss_pred HHHHHHHHHHHHH
Q 003531 558 VEEGIHYFTSLKK 570 (812)
Q Consensus 558 ~~~a~~~~~~m~~ 570 (812)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.06 E-value=1.1e+02 Score=32.78 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=61.0
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHH--hcCcHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhhcCC
Q 003531 519 THGLGKAAVELFNKMLEGPTKPNDI--TFLCAISACS--HSGLVEEGIHYFTSLKKDYGI-EPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~ 593 (812)
..+++..|.++|+++.+. ++++.. .+..+..+|. ...++++|.+.++........ .-....+..++...-....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 221 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALES 221 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHh
Confidence 667888888888888776 555544 3334444443 355677888887776543111 0112233333333222222
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHH--hcCCHHHHHHHHHHHhcc
Q 003531 594 LNEAWDFIQKMPIEP-GITVFGAMLGACK--IHKNVELGEKAANRLFEL 639 (812)
Q Consensus 594 ~~eA~~~~~~~~~~p-d~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 639 (812)
+....+....-..++ -..+..-+.+|-+ ..|+++.|...+-+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 222 ILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222211111111 1234445555554 368888888877777764
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.95 E-value=5.3e+02 Score=34.34 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCChHHHHHHHhc-CCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCC
Q 003531 278 TALVDMYAKCGRVETARLVFDG-MKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGD 355 (812)
Q Consensus 278 ~~li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 355 (812)
-.+...|+.-+++|...-+... ..+++ ...-|.-....|++..|...|+.+.+. .|+ ..+++-++......+.
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccc
Confidence 3444467776776666555542 22222 223344556678888888888888765 444 5577777777666676
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHH-HHHHHHHhCCChHHHHHHHHhcCCCCcccHHHH
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTN-SLISMYSKCKKVDRAADIFSKLQGKTLVSWNAM 412 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~-~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 412 (812)
++...-..+...... .+...-++ .=+.+--+.++++....... .++..+|.+.
T Consensus 1499 l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 666554333332221 22222222 22333356666666666555 4556666654
No 373
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.70 E-value=1.6e+02 Score=28.34 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC----hhHHHHH
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV----MDHYGAM 584 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 584 (812)
.+.-++.+.+.+...+|+...++-++. +| |..+-..++..++-.|++++|..-++-.- .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 445567777888888888888877774 45 45566677788888999999887776554 24443 4455555
Q ss_pred HHHHhhcCCHHHHH-HHHHhC--CCCC--CHHHHH-HHHHHHHh--cCCHHHHHHHHHHHhccCCCC
Q 003531 585 VDLLGRAGRLNEAW-DFIQKM--PIEP--GITVFG-AMLGACKI--HKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 585 i~~~~~~g~~~eA~-~~~~~~--~~~p--d~~~~~-~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~ 643 (812)
|.+- .+. ++|..- |.-+ ....|- +|+.+..- -|.-+.....-+++++.-|..
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 5431 222 223221 2111 233454 44444333 345566677777888877753
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.45 E-value=3.2e+02 Score=31.60 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHH-hcCCchHHHHHHHHhHhCCCCCCcc----h-HHHHHHHhcCcCChHHHHHHHHHHHHhC----CCC
Q 003531 102 LDALYHTMLKGYA-KFASLDDAVSFLIRMRYDDVAPVVY----N-YTYLLKVCGDVGEIRRGKEIHGQLIVNG----FSL 171 (812)
Q Consensus 102 ~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~----t-~~~ll~~~~~~~~~~~a~~l~~~~~~~g----~~~ 171 (812)
+..++-.+.+.+. ...+.++|...+++.....-+++-. . -..+++.+.+.+... |.+..+..++.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3444555555555 4667777777777654432222211 1 112334444444433 777776665431 112
Q ss_pred ChhHHHHH-HHHHHhcCChhHHHHHhccCCC-------CCcchHHHHHHHH--HhCCChHHHHHHHHHHHHcCC------
Q 003531 172 DLFAMTGV-VNMYAKCGQIEEAYKMFDRMPE-------RDLVSWNTIVAGF--AQNGFAELALDLVTRMHEEGR------ 235 (812)
Q Consensus 172 ~~~~~~~L-i~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~------ 235 (812)
-...+.-+ +..+...++...|.+.++.+.. +-+...-.++.+. .+.+.++++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22333333 3333333677777777766542 1122233333333 345666777777776643222
Q ss_pred ---CCCcchHHhHHHHHh--ccCChHHHHHHHHHH
Q 003531 236 ---RGDFITIVSILPAVA--NVGSLRIGKAVHGYA 265 (812)
Q Consensus 236 ---~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~ 265 (812)
.|-..+|..+++.++ ..|+++.+++....+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223445666666554 445655665554444
No 375
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.40 E-value=3.1e+02 Score=31.39 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHhhcC-C--ChhHHHHhhccCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHh
Q 003531 77 KLVSLFCKY-N--SLSDAARVFEPIPDKL--DALYHTMLKGYAKFASLDDAVSFLIRM 129 (812)
Q Consensus 77 ~l~~~~~~~-g--~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 129 (812)
.|+....+. . .-+.+.+++..-++.. ..-|+ .+..+.-.|.+++|.+++...
T Consensus 118 ~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 118 QLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred HHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 777777332 2 2233445555443322 45576 688888899999999998543
No 376
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.40 E-value=13 Score=35.60 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 587 LLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
++.+.|+.+-|.+++.++ .+.| ....|--+...--+.|+++.|.+.+++.++++|+|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 455678888888888877 5555 5678888888888999999999999999999997744
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.00 E-value=2e+02 Score=29.10 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHH----HhcCCCCChhHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLK----KDYGIEPVMDHY 581 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 581 (812)
+.+.....|...|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+...++.+. +.+|+.-+-..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 344455677788888888888888877 444 55667777777888888666666665554 345666654433
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.94 E-value=2.6e+02 Score=30.35 Aligned_cols=148 Identities=7% Similarity=-0.062 Sum_probs=62.2
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc--HHhHHHHHhccc
Q 003531 382 ISMYSKCKKVDRAADIFSKLQGKT----LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT--MVSVIPALAELS 455 (812)
Q Consensus 382 i~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~ 455 (812)
+...++.|+.+.+..+++.-...+ ..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 344455666666665555332111 11112 22233344554 33444445565554322 122334444555
Q ss_pred cHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHH---HHHHHHHHHhCCCHHHHHHHH
Q 003531 456 VIRYAKWIHALVIRSCFEKNVF--VMTALIDMYAKCGAVGTARALFDMMNERHVTT---WNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~ 530 (812)
+.+....+ .+.|..++.. ...+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 55444333 3333332211 11222334445566666666665544333221 122333233445443 34
Q ss_pred HHHHhCCCCCCh
Q 003531 531 NKMLEGPTKPND 542 (812)
Q Consensus 531 ~~m~~~g~~p~~ 542 (812)
+-+++.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 445556666653
No 379
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.64 E-value=37 Score=36.48 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 604 MPIEPGI--TVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 604 ~~~~pd~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
..++|.. .++++-++.+.+++|+..|-.++++++++.|..
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3556643 367788888999999999999999999999853
No 380
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=59.55 E-value=35 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=31.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 602 QKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 602 ~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
-.+.+-|++.+..+.+.||++-+|+..|.++++-+-..-.+....|-
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~ 83 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYP 83 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHH
Confidence 33467899999999999999999999999999877654333333443
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.10 E-value=88 Score=31.84 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccCCCCccchh
Q 003531 627 ELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
..|.++..++++.+|.-+.+..
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHH
Confidence 3577888899999997665443
No 382
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.23 E-value=19 Score=34.89 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 622 IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
+..+++.+..-..+++++.|+..-.+..|+........+++|..+..+.
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555554444
No 383
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.11 E-value=2.3e+02 Score=30.87 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=32.4
Q ss_pred cHHHHHHHHHH---cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhcc
Q 003531 408 SWNAMILGYAQ---NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAEL 454 (812)
Q Consensus 408 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 454 (812)
.+..++.++.+ ..+.+.|+.++..|.+.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34555666655 478999999999999999888755554444444433
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.63 E-value=19 Score=21.15 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.|..+...|...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555666666666666665554
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=1.2e+02 Score=29.62 Aligned_cols=80 Identities=11% Similarity=-0.081 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHhcC--CCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhH-HHHHHHHHHhcCcHHHHH
Q 003531 487 AKCGAVGTARALFDMMN--ERHV-TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT-FLCAISACSHSGLVEEGI 562 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~ 562 (812)
....+++.|...|.+.. .|++ .-|+.-+..|.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 33445555555554443 3444 2344455555555566655555555555 5555442 223333444455555555
Q ss_pred HHHHHH
Q 003531 563 HYFTSL 568 (812)
Q Consensus 563 ~~~~~m 568 (812)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 554443
No 386
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.32 E-value=13 Score=30.26 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=25.9
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...+++.++.+|+|...-..++..+...|++++|...+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666666666665555443
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.99 E-value=2.3e+02 Score=28.19 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCChHHHHHHHhcCCC--C--C---chhHHHHHHHHHhCCChhHHHHHHHHHHHc---CC--CCChhhHHHHHHHHhccC
Q 003531 287 CGRVETARLVFDGMKS--R--N---VVSWNSMIAAYVEGGNPEEAMRIFQKMLDQ---GV--EPTNVTIMEALHACADLG 354 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~--~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~~ 354 (812)
..+.++|..-|+++.+ + . -.+.-.||..+.+.|++++.++.|.+|+.- .+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777766543 1 1 123345778888888888888888887531 11 122334555555544444
Q ss_pred ChHHHHHHHHHHhhc-----CCCCChhHHHHHHHHHHhCCChHHHHHHHHhc
Q 003531 355 DLERGIFVHKLLDQL-----KLGTDVSMTNSLISMYSKCKKVDRAADIFSKL 401 (812)
Q Consensus 355 ~~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 401 (812)
+.+.-...++.-.+. +-..-..+-+-|...|...|++..-.++++++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 444333333322211 00001112233445555555555555555544
No 388
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.67 E-value=2.7e+02 Score=30.28 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=28.9
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCcchHHhHHHH
Q 003531 206 SWNTIVAGFAQ---NGFAELALDLVTRMHEEGRRGDFITIVSILPA 248 (812)
Q Consensus 206 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 248 (812)
....+++++.+ .++++.|+..+..|.+.|..|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555666655 57889999999999988877765444333333
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.53 E-value=1.6e+02 Score=31.36 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=46.1
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHhccCCC-CccchhhHhhhhh-hcCCchHHHHHHHHHHH
Q 003531 609 GITVFGAM---LGACKIHKNVELGEKAANRLFELDPD-EGGYHVLLANIYA-AASMWDKLAKVRTIMEK 672 (812)
Q Consensus 609 d~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 672 (812)
|...|.++ +....+.|-+.-|.+..+-++.++|+ ||-.-....+.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455444 34567889999999999999999998 7776666677764 56777766666665544
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.91 E-value=42 Score=26.33 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=23.3
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHH
Q 003531 519 THGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHY 564 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 564 (812)
..++.++|+..|+..++.-..|. -.++..++.|++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655322221 12444555555666665555543
No 391
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=52.50 E-value=91 Score=33.02 Aligned_cols=83 Identities=12% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc----ccCCCCccccchhhhhhhc
Q 003531 666 VRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGY----VPDTNSIHDVEDYVQENLL 741 (812)
Q Consensus 666 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~----~p~~~~~~~~~~~~~~~~~ 741 (812)
+|..|.+..+...+..|.... --..|....+|. ++.+.+.++- -+| .||...+|.+.. +.+--
T Consensus 309 yWqamiEeAiTr~esfsVmYt---------Pfatki~~d~ie-k~k~~F~k~H-PaY~~~IytD~~glHilPq--t~~ws 375 (569)
T PF15015_consen 309 YWQAMIEEAITRAESFSVMYT---------PFATKIKADKIE-KVKEVFTKTH-PAYVEYIYTDPQGLHILPQ--TADWS 375 (569)
T ss_pred HHHHHHHHHHhcccceeEEee---------cccccccHHHHH-HHHHHHHhhC-ccceeEEecccceeeeccc--cCCCC
Confidence 355666655555554443311 112355556654 3444443322 233 355555666543 22222
Q ss_pred hhccHHHHHHHccccCCCCC
Q 003531 742 SSHSEKLAIAFGLLNSSPGS 761 (812)
Q Consensus 742 ~~hse~la~~~~~~~~~~~~ 761 (812)
+.-.+.-=...|+++...|.
T Consensus 376 ~~p~qqylltlGF~nke~gk 395 (569)
T PF15015_consen 376 SFPPQQYLLTLGFKNKEDGK 395 (569)
T ss_pred CCCHHHHHHHhcccccccch
Confidence 33345555667888777664
No 392
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=52.33 E-value=2.8e+02 Score=30.92 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-ccchhhHhhhhhh
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE-GGYHVLLANIYAA 656 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~ 656 (812)
...-.+|-+-+....++.-|.++-++.++. ....|.+.+-+|.+.+++..|..-|++++++.-.| |....-+.+. ..
T Consensus 556 ~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ie 633 (1141)
T KOG1811|consen 556 PAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IE 633 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hc
Confidence 445667777777778888888888777543 34489999999999999999999999999986433 3333444443 23
Q ss_pred cCCchHHHHHHHHHHHcCCccCC
Q 003531 657 ASMWDKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 657 ~g~~~~a~~~~~~m~~~g~~~~~ 679 (812)
.|-..++..++ .|.+.-.++.|
T Consensus 634 Ggpp~dVq~Vr-em~dhlak~ap 655 (1141)
T KOG1811|consen 634 GGPPRDVQDVR-EMLDHLAKPAP 655 (1141)
T ss_pred CCCcchHHHHH-HHHHHhccCCc
Confidence 44333333333 34444344444
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.29 E-value=20 Score=35.94 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=40.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh
Q 003531 589 GRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
-+.|+.++|..+|+.+ .+.|+ +.+..-++.-.-.+++.-+|-.+|-+++.+.|.++.+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3567778888777665 55553 3344444444555677788888888888888877765553
No 394
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.09 E-value=4.9e+02 Score=31.21 Aligned_cols=129 Identities=13% Similarity=0.220 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 003531 206 SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI--VNVSTALVDM 283 (812)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 283 (812)
-|..||..|...|+.++|++++++.....-.-|.. ..+.-..+.++..+.+-+.. ...|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~~~Li~~y~~---- 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAENLDLILEYAD---- 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccchhHHHHHhh----
Confidence 48899999999999999999999987642101111 11122234444444443211 111111
Q ss_pred HHhCCChHHHHHHHhcCCCCCchhHH-HHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 003531 284 YAKCGRVETARLVFDGMKSRNVVSWN-SMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACA 351 (812)
Q Consensus 284 y~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 351 (812)
+.-..+.+...++|..-......+.+ .-+-.|......+-+...++.+....-.++..-.+.++.-|.
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11234556666666551110111111 123446666777888888888877655566665566655543
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.67 E-value=89 Score=34.58 Aligned_cols=133 Identities=16% Similarity=0.047 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHHhcC--cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHH
Q 003531 538 TKPNDITFLCAISACSHSG--LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR-AGRLNEAWDFIQKM-PIEP--GIT 611 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~-~~~p--d~~ 611 (812)
--|+..|...++.-...-- .-+-|-.++..|.+ .+.|--.+.| +..+|.| .|+...|...+..+ ...| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3456666555554333221 23345556655553 4455433333 2344544 68888998888776 3334 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..-.|.....+.|-.-.|-.++.+.+.+.-..+.++..++++|....+.+.|.+.++.+.++
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 44456666677777788999999999988888889999999999999999999999888765
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.85 E-value=26 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=16.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC
Q 003531 311 MIAAYVEGGNPEEAMRIFQKMLDQG 335 (812)
Q Consensus 311 li~~~~~~g~~~~A~~l~~~m~~~g 335 (812)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777776543
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.52 E-value=1.3e+02 Score=27.08 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCcchHHhHHHHHhcc
Q 003531 202 RDLVSWNTIVAGFAQNGF-AELALDLVTRMHEEGRRGDFITIVSILPAVANV 252 (812)
Q Consensus 202 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 252 (812)
.+-.+|++++.+.++..- ---+..+|.-|.+.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888866655 445677888888877888888888888887654
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=50.46 E-value=2.9e+02 Score=28.06 Aligned_cols=52 Identities=10% Similarity=0.238 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhcC-----CCCcccHHHHHHHHHHcCChHH
Q 003531 373 TDVSMTNSLISMYSKCKKVDRAADIFSKLQ-----GKTLVSWNAMILGYAQNGRVNE 424 (812)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~ 424 (812)
++..+....+..+++.+++..-.++++... ..|...|...|....+.|+..-
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 344444455555555555555555554432 2245556666666666666543
No 399
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.41 E-value=5.6e+02 Score=31.35 Aligned_cols=255 Identities=11% Similarity=-0.022 Sum_probs=140.5
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCC
Q 003531 294 RLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGT 373 (812)
Q Consensus 294 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 373 (812)
..+...+.++|...-..-+..+.+.+. +++...+.+.++ .+|...-...+.++...+........+..+.+ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 344455556777777667777776665 345555555553 23333333444444333221111122222222 24
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhc
Q 003531 374 DVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAE 453 (812)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 453 (812)
|..+-.+.+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 6666666666666543221 2344555666666655566666666554332 122222 2444444455555555
Q ss_pred cccHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 454 LSVIRY-AKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR-ALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 454 ~~~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~-~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
.+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+-
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 2233333322 456778888888899888866553 34455556777666777777877765 56777777
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 532 KMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 532 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
.+++ .|+...-...+.++.+.+.-..+...+....+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7765 56766666777777775444566666766664
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.85 E-value=33 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=14.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEG 536 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~ 536 (812)
|..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.00 E-value=43 Score=26.28 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=31.2
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDF 600 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 600 (812)
+...-++|+..|....++..-.|+ -.++.+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888777765333332 34566777777777777777665
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.92 E-value=1.1e+02 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhh
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRS 434 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (812)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999877
No 403
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.89 E-value=2e+02 Score=27.45 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
..+.++..+...|+++.|-+.|.-+++
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 344455555555566666655555555
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.72 E-value=35 Score=27.92 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=36.0
Q ss_pred HhcCCHHHHHHHHHHHhccCCCC---------ccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 621 KIHKNVELGEKAANRLFELDPDE---------GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+.||+..|.+.+.+.++..... ......++.++...|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777777777776533211 12345678888999999999998888765
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.43 E-value=43 Score=29.90 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHH
Q 003531 594 LNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLA 664 (812)
Q Consensus 594 ~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 664 (812)
-+.|.++++-|+ .....-.........|++..|..+.+.++..+|+|...-.+.+++|...|.-.+..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 456777777774 22333334455677899999999999999999999888888888877666544433
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.32 E-value=1.1e+02 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003531 206 SWNTIVAGFAQNGFAELALDLVTRMHE 232 (812)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (812)
-|..|+.-|-..|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999887
No 407
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.19 E-value=94 Score=25.24 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--ccchhhHhhhhhhcCCch-HHHHHHHHH
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDPDE--GGYHVLLANIYAAASMWD-KLAKVRTIM 670 (812)
Q Consensus 609 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~m 670 (812)
|......+...+...|+++.|...+-++++.+|+. ...-..|..++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45566667777788888888888888888777643 445556666666666643 444445444
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.86 E-value=20 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 624 KNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 624 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
|+.+.+..++++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777778887777776665555443
No 409
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.76 E-value=3.9e+02 Score=28.49 Aligned_cols=94 Identities=7% Similarity=0.022 Sum_probs=59.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH---HHHH----HH
Q 003531 549 ISACSHSGLVEEGIHYFTSLKKDYGIEP----VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGIT---VFGA----ML 617 (812)
Q Consensus 549 l~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~---~~~~----ll 617 (812)
-.++...|+...-..++....+.-.+.- .....|+|++.|...+.++.|.+++.+.+. |+.. -|.- ++
T Consensus 176 ~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~G 254 (493)
T KOG2581|consen 176 YLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLG 254 (493)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHh
Confidence 3345566666666666555544323332 245577788888888899999999888742 2221 2211 22
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.....++++..|.+.+-+++...|.+
T Consensus 255 rIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 255 RIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHhhcchhHHHHHHHHHHHhCcch
Confidence 23456788888998888888888864
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.42 E-value=61 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 608 PGITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 608 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
|++.++..++.++...|+.++|....+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333333344444444444444444443333
No 411
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.36 E-value=3e+02 Score=27.01 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=58.8
Q ss_pred hcCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 488 KCGAVGTARALFDMMNE-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 488 k~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
..+++++|.+.+-.-.- ++-. .-++.++..+|+.+.|+.+++.+.-..- +......++.+ ...+.+.||..+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 34667777777643321 2211 1366777778888888888776433211 12222223333 44578888887665
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH
Q 003531 567 SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGI 610 (812)
Q Consensus 567 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~ 610 (812)
..... -....+..++..+.....-....+.+-.+|+.++.
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 44321 11345666666655443323334444455655443
No 412
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.62 E-value=2.3e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 506 HVTTWNVMIDGYGTHGL-GKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 506 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
+-.+|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34456666666544443 22345556666555555666666666655544
No 413
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.16 E-value=2.8e+02 Score=26.36 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=56.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH-----HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL-----CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 588 (812)
...+...|++++|..-++..+.. |....+. .|.......|.+|+|...++....+ +. .......-+|+|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cH--HHHHHHHhhhHH
Confidence 44567788888888888877752 2233333 3445667888888888888765532 21 222233457888
Q ss_pred hhcCCHHHHHHHHHhC
Q 003531 589 GRAGRLNEAWDFIQKM 604 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~ 604 (812)
...|+-++|+.-+++.
T Consensus 170 l~kg~k~~Ar~ay~kA 185 (207)
T COG2976 170 LAKGDKQEARAAYEKA 185 (207)
T ss_pred HHcCchHHHHHHHHHH
Confidence 8999999998888776
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.12 E-value=5.6e+02 Score=29.83 Aligned_cols=176 Identities=13% Similarity=-0.038 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNE--RHVTTWN-VMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
+...-+..-.+.++++.+...+..|.. .+..-|. =+..++...|+.++|...|+++... .+|..++.+ .+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~ 386 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QR 386 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HH
Confidence 344444455567777777777777752 1111121 1445555577777777777776331 245444422 22
Q ss_pred cCcHHHH-HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003531 555 SGLVEEG-IHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAA 633 (812)
Q Consensus 555 ~g~~~~a-~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~ 633 (812)
.|..-.- ......-.....-.| --.-+..+...|+..+|...+..+--..+......+...-...|..+.++...
T Consensus 387 Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 387 LGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred cCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2221000 000000000000001 11224566677888888888776622345555555555566778888888777
Q ss_pred HHHhccC---CCCccchhhHhhhhhhcCCchHHH
Q 003531 634 NRLFELD---PDEGGYHVLLANIYAAASMWDKLA 664 (812)
Q Consensus 634 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~ 664 (812)
.+....+ -.-+..|.-...-++..-..+.+.
T Consensus 463 ~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 463 IAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred hhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 6543211 011233444444444444455443
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.01 E-value=1.2e+02 Score=30.29 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+=+++.+.++++.|....++++.++|+++.-.---|-+|...|...-|.+-.....+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33355777888999999999999999988877778888999999998888877765543
No 416
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.78 E-value=2.6e+02 Score=28.21 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=53.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh--
Q 003531 514 IDGYGTHGLGKAAVELFNKMLE--GPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG-- 589 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 589 (812)
|.+++..|++.+++...-+--+ +.++|...-.. |-.|++.|....+.++-..-.+.-+ +-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 5666777777777654433222 12444333333 3357888888888877777665422 223344777776665
Q ss_pred ---hcCCHHHHHHHHHhC
Q 003531 590 ---RAGRLNEAWDFIQKM 604 (812)
Q Consensus 590 ---~~g~~~eA~~~~~~~ 604 (812)
=.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 479999999998544
No 417
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.30 E-value=26 Score=35.14 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=43.2
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 620 CKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.++.|+.|+|..+|+.++.+.|+++.+..-++...-...+.-+|.+.+-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 567899999999999999999999999888888877777777777776544
No 418
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.49 E-value=1.1e+02 Score=35.00 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhcC-CCC
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI----------TFLCAISACSHSGLVEEGIHYFTSLKKDYG-IEP 576 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p 576 (812)
.+...|+-.|....+++.-+++.+.+.. -||.. .|.-.++--.+-|+-+.|+...-.+.++.| +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3555667778788888888888888776 24321 122333333456777777777666655433 345
Q ss_pred Ch
Q 003531 577 VM 578 (812)
Q Consensus 577 ~~ 578 (812)
|.
T Consensus 279 Dm 280 (1226)
T KOG4279|consen 279 DM 280 (1226)
T ss_pred ce
Confidence 53
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.10 E-value=52 Score=24.48 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 541 NDITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 541 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
|-.-...++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444555566666666666665555543
No 420
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.05 E-value=3.1e+02 Score=25.98 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHhcCC------CChHHHHHHHH-HHHhCCC--HHHHHHHHHHHHhC
Q 003531 486 YAKCGAVGTARALFDMMNE------RHVTTWNVMID-GYGTHGL--GKAAVELFNKMLEG 536 (812)
Q Consensus 486 y~k~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 536 (812)
....|++++|..-++++.+ .-...|+.+.. +|+.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4456777777777776652 23445666655 6666653 55666666655543
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.03 E-value=80 Score=30.00 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=36.3
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
...+.+......+.+.+.....|++..|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555456788888888888888888888888887777
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.53 E-value=2.2e+02 Score=24.05 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEG 536 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (812)
.++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++-.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455555554444432 112222222334556777777744434444677777766643 3566667777766666555
Q ss_pred C
Q 003531 537 P 537 (812)
Q Consensus 537 g 537 (812)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 423
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=41.42 E-value=5e+02 Score=31.43 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLG 589 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 589 (812)
|..+.-++..+..+......++..+. .|..--.+.|.++.+.+. .+....++..-+++.-.|- ..-|-++...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 44444444455443222333333332 122223344455554433 2333444444444444453 233433332222
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCch
Q 003531 590 RAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKIHKN-------VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 661 (812)
..+-++...++.+.-.+.+ ++--.++|++++...+. -+.=.-+.+.+++++|-||.+-..|+..+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3333444444433333333 34456888888853221 122344566778999999999999999999989988
Q ss_pred HHHHH
Q 003531 662 KLAKV 666 (812)
Q Consensus 662 ~a~~~ 666 (812)
+.++-
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 87763
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.09 E-value=3.9e+02 Score=26.87 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh-Hhhhhh
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL-LANIYA 655 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~ 655 (812)
++.....++..|.+.|++.+|+..|-... .|+......++.-....|. |.+...|.. ..--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 67778888899999999999988775432 2222222123322222222 222222222 222355
Q ss_pred hcCCchHHHHHHHHHHHc
Q 003531 656 AASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 656 ~~g~~~~a~~~~~~m~~~ 673 (812)
..|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667777777777666654
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.98 E-value=75 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445667788888888888887643
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.15 E-value=3.2e+02 Score=28.27 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh------cCcHHHHHHHHHHHHHhcCCCCC
Q 003531 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH------SGLVEEGIHYFTSLKKDYGIEPV 577 (812)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~ 577 (812)
+.|-..|+- +..++++.++++....+. |........|.+|-. .-+|..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 345556653 234677788888877764 777777777766622 2356666677766653 3454
Q ss_pred hh-HHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 578 MD-HYGAMVDLLGRAGRLNEAWDFIQKMPIEP----GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 578 ~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
+. +.|--+ ++++.--.+.++..++.+.-.| -...|..-.+.+.+.|..++|...|++++++.++..+
T Consensus 329 PvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 329 PVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CeEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 32 222222 2233333445555555553232 1224455556688889999999999999988876543
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.06 E-value=1e+02 Score=27.20 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
-|.-+|.+.|+++.++++.+.+++.+|+|..
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3445688899999999999999999998643
No 428
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.91 E-value=3.2e+02 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=16.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHh
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~ 571 (812)
.-|.-|.+.|+++.+...|.+....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4455667777777777777766644
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=6.1e+02 Score=28.48 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=25.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-HhcCcHHHHHHHHHHH
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC-SHSGLVEEGIHYFTSL 568 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m 568 (812)
.+.+.|-+..|+++-+-+.+....-|+.....+|..| .++.+++--+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555555555522222344444444444 3444555555555444
No 430
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=6.1e+02 Score=31.12 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------------------CC-------------hHHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 484 DMYAKCGAVGTARALFDMMNE-------------------RH-------------VTTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~-------------------~~-------------~~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
.+|..+|...+|...|.+... ++ ..-|-..+..+-+++..+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 347788888888888876541 00 1224456667777777777777777
Q ss_pred HHHhCCCCCC----hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHH
Q 003531 532 KMLEGPTKPN----DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV----MDHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 532 ~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~ 595 (812)
.+++. +.|| ..+++.+.+-....|.+.+|.. .+.+ .|| .....-++-.+..+|.++
T Consensus 1008 ~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~---ai~~----npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1008 KAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYK---AILR----NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHH---HHHc----CCcHHHHHHHHHHHHHHHHhccchH
Confidence 77664 3333 2245555555556666665544 3332 233 234555666666676654
No 431
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.23 E-value=5.7e+02 Score=28.02 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCc
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPG 680 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 680 (812)
+.++.+..+...+++-.+.++-...+.+.+..+-++.++..|++.+|.++.. ..|+.++||
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 3455666777777777777777777777778888999999999999987654 334555554
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.20 E-value=2.8e+02 Score=29.79 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHh--hcCCHHHHHHHHHhC
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPVMD--HYGAMVDLLG--RAGRLNEAWDFIQKM 604 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~--~~g~~~eA~~~~~~~ 604 (812)
...+.+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445789999999999999875 555544 5555555554 567889999999887
No 433
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.08 E-value=2.2e+02 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 586 (812)
+..+-++......+-|++...-..|.||.+.+++..|..+|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34444556666678899999999999999999999999999988765 3343335655543
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.76 E-value=1.4e+02 Score=24.01 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCCCChhHHHHHHHHHHhcCCchHH
Q 003531 56 LRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDA 122 (812)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 122 (812)
...+++..+..|+- .......+-.+-.+.|+.+.|+.+.+.++ +....+..+++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 45667777777765 22222223222235678888888888888 6667778888888777765544
No 435
>PRK14015 pepN aminopeptidase N; Provisional
Probab=36.58 E-value=6.7e+02 Score=30.46 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKI 622 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~ 622 (812)
-.+.|.++.+.+. .+....++..-+++.-.|- ..-|-++...-.+.+-++...++.+.-.+.+ ++--.++|++++..
T Consensus 717 ~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~ 795 (875)
T PRK14015 717 RLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAA 795 (875)
T ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhh
Confidence 3344555554433 2333344444444444452 3334333332223333444444443333333 34456888888854
Q ss_pred cCC------HHHH-HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHH
Q 003531 623 HKN------VELG-EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 623 ~g~------~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
.+- -..+ .-+.+.++++++-||.+-..|+..+.+-.++++.++.
T Consensus 796 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 796 ANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred cCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 322 1223 4455677899999999999999999998998887764
No 436
>PF15161 Neuropep_like: Neuropeptide-like
Probab=36.18 E-value=14 Score=26.12 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=11.9
Q ss_pred ecccccCCchhhhhhhhc
Q 003531 767 KNLRVCGDCHNATKYISL 784 (812)
Q Consensus 767 ~nl~~c~~~h~~~k~~s~ 784 (812)
-.-|-|.|||.+- |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3468899999764 5543
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.02 E-value=4.3e+02 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=20.0
Q ss_pred HhCCCHHHHHHHHHHHHhCCCC-CC
Q 003531 518 GTHGLGKAAVELFNKMLEGPTK-PN 541 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~-p~ 541 (812)
...|+++.|+++.+-+++.|.. |+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCc
Confidence 4679999999999999998854 54
No 438
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.62 E-value=31 Score=35.33 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=37.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHH
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEPGIT-VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKL 663 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~pd~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 663 (812)
..+.+.++...|++-+... .+.||.. -|-.-..+-+..|+.++|...++.+.+++-+ ..+-..|-.+.-.++..++-
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~ 234 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEH 234 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhc
Confidence 3334444444444333333 3334322 2222233444556666666666666655542 23333444444444444444
Q ss_pred HHHHHHH
Q 003531 664 AKVRTIM 670 (812)
Q Consensus 664 ~~~~~~m 670 (812)
.+.+++.
T Consensus 235 ~~k~er~ 241 (377)
T KOG1308|consen 235 RRKYERA 241 (377)
T ss_pred hhHHHHH
Confidence 4443333
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.27 E-value=64 Score=32.71 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAI 549 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 549 (812)
-||..|..-.+.||+++|+++++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788899999999999999999999998776666665443
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.92 E-value=1.8e+02 Score=27.22 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+..|.+.|.+++|.+++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34569999999999999999998 7765443
No 441
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.91 E-value=3.7e+02 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC--Cc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC
Q 003531 379 NSLISMYSKCKKVDRAADIFSKLQGK--TL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD 440 (812)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 440 (812)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+...+.+..-.++....++.+...-..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 35777899999999999999988632 12 2334445555555545555555665555433343
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.51 E-value=4.4e+02 Score=28.14 Aligned_cols=26 Identities=8% Similarity=-0.299 Sum_probs=16.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPN 541 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (812)
.+...+++..|.++|+++.+...+|.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34456677777777777776544443
No 443
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.21 E-value=51 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=25.6
Q ss_pred HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHh
Q 003531 114 AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVC 148 (812)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 148 (812)
-..|.-.+|..+|++|+..|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456677899999999999988884 67777654
No 444
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.07 E-value=2e+02 Score=31.19 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------ChHHHHHHHHHH-----
Q 003531 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER-------------HVTTWNVMIDGY----- 517 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-------------~~~~~~~li~~~----- 517 (812)
.+++-.++++.+.+.| . ..+...-|+.|.+.+++++|..-+++-.+. .+..-..++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~--ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-G--ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-C--CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4555666666666654 1 223455678888888888888887755421 122333344432
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCcHHHHHHHHHHHH---Hh---cCCCCChhHHHHH
Q 003531 518 GTHGLGKAAVELFNKMLEGPTKPN---DITFLCAISACSHSGLVEEGIHYFTSLK---KD---YGIEPVMDHYGAM 584 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~---~~~~p~~~~~~~l 584 (812)
.+||-+ +|..+++-+...|+.-. .++|+ --|++.=-+++++..|+.+- .. .|+..+.+.+.+|
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYn---lPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYN---IPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceec---cccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 344533 56677777777776554 33443 23444445666655554332 11 2555555555443
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.98 E-value=64 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
-.-.+|.||.+.|++++|.++.+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334567788888888888887777654
No 446
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.77 E-value=5.4e+02 Score=26.10 Aligned_cols=147 Identities=8% Similarity=-0.051 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHhcCCCC-hHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc-----C--c
Q 003531 490 GAVGTARALFDMMNERH-VTTWNVMIDGYGT----HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS-----G--L 557 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g--~ 557 (812)
.+..+|.++|....+.+ ......|...|.. ..+..+|...|++..+.|..+-..+...+...+... - +
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 34666777777555433 3334445444443 337888888888888887554322233333333332 1 2
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------
Q 003531 558 VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR----AGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHK--------- 624 (812)
Q Consensus 558 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g--------- 624 (812)
...|...|..+... + +......+..+|.. ..++++|...|++.-..-+...+..+. .+...|
T Consensus 171 ~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhc
Confidence 33677888777654 3 44445555555543 347889999998873222333333333 555555
Q ss_pred ------CHHHHHHHHHHHhccCC
Q 003531 625 ------NVELGEKAANRLFELDP 641 (812)
Q Consensus 625 ------~~~~a~~~~~~~~~~~p 641 (812)
+...|...+.+..+..+
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 55666666666655544
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.45 E-value=64 Score=32.71 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHh
Q 003531 202 RDLV-SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVS 244 (812)
Q Consensus 202 ~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 244 (812)
+|.. -||..|...++.|+.++|+.|+++.++.|+.--..||..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4444 377899999999999999999999999887655555543
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.44 E-value=52 Score=28.80 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH
Q 003531 418 QNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL 451 (812)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 451 (812)
..|.-.+|..+|++|++.|-+||. |..|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999988884 55555543
No 449
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.26 E-value=3.2e+02 Score=23.05 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003531 254 SLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLD 333 (812)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (812)
..++|..|.+.....+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-.+ +.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45566666666555543 2233333344556688999999665556666899998877654 77888888888877765
Q ss_pred cC
Q 003531 334 QG 335 (812)
Q Consensus 334 ~g 335 (812)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 450
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=31.07 E-value=2.9e+02 Score=27.88 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHHHhcCCchHHHHHHHHhHhC--CCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 003531 109 MLKGYAKFASLDDAVSFLIRMRYD--DVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAK- 185 (812)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~- 185 (812)
=|.+++..++|.+++...-+-.+. .++|..--.. |-.|.+.+......++-..-++..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367888888888887654443321 1333322222 22344566666555555554444222233335555555443
Q ss_pred ----cCChhHHHHHh
Q 003531 186 ----CGQIEEAYKMF 196 (812)
Q Consensus 186 ----~g~~~~A~~~f 196 (812)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 25555555544
No 451
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=30.80 E-value=22 Score=19.43 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=8.4
Q ss_pred CCchhhhhhhhc
Q 003531 773 GDCHNATKYISL 784 (812)
Q Consensus 773 ~~~h~~~k~~s~ 784 (812)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888774
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.79 E-value=5.3e+02 Score=25.43 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=79.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-HhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC-SHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRA 591 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 591 (812)
++..+-+.|++++..+.++++...+...+..--+.+-.|| ...|....+++++..+.....-..+ .....++.-|-+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 4556677788888888888888765555544444444444 2234455566666555543222212 1222222222110
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHHH-HHHH-HHHHH-----hcC-----CHHHHHHHHHHHhc-----cCCCCc
Q 003531 592 ------GRLNEAWDFIQKM--PI--EPGITV-FGAM-LGACK-----IHK-----NVELGEKAANRLFE-----LDPDEG 644 (812)
Q Consensus 592 ------g~~~eA~~~~~~~--~~--~pd~~~-~~~l-l~~~~-----~~g-----~~~~a~~~~~~~~~-----~~p~~~ 644 (812)
.--.+..++++.- |. .+...+ |.-| +..|+ ..| -.+.|...|+++++ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123455555553 21 121222 2222 11121 111 24678888888765 567766
Q ss_pred cchhhH---hh-hhhhcCCchHHHHHHHHHHHcCC
Q 003531 645 GYHVLL---AN-IYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 645 ~~~~~l---~~-~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
...-+. +- .|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 533322 22 23557999999888777766533
No 453
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.72 E-value=91 Score=24.61 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 624 KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 624 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
|+.++|+.+|++.++.--.-..+-+- .....-.|++|.++..+|.+.
T Consensus 22 g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 22 GDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHHH
Confidence 66666777776665421000000000 345667899999999999763
No 454
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.28 E-value=58 Score=32.89 Aligned_cols=72 Identities=6% Similarity=-0.014 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGA-MLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. --.-+..++|++.+..++.+.+.++|++|..+.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3333333333333334444444444443 2344 4445533 112245788888888888888888888887654
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.18 E-value=3.7e+02 Score=23.41 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 525 AAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
++.++|+.|...|+--. ..-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666555444 3344455555556666666666654
No 456
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.77 E-value=3.3e+02 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=12.2
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 003531 516 GYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (812)
.+.+.|+.-+|+++.++++.
T Consensus 5 ~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 44556666666666666655
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.56 E-value=86 Score=30.36 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=50.0
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
...++.+.+-+++.+++++-|+....+..++..--+.|+.+.|.+-+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999999999999999999999999998887644
No 458
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.46 E-value=6.5e+02 Score=25.96 Aligned_cols=84 Identities=15% Similarity=-0.045 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003531 556 GLVEEGIHYFTSLKKDYGI---EPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+..-..+.+.-.++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3367888888888763111 3355666667777778888766555555555456777888889998888899998999
Q ss_pred HHHHhcc
Q 003531 633 ANRLFEL 639 (812)
Q Consensus 633 ~~~~~~~ 639 (812)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9998884
No 459
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.37 E-value=2.2e+02 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhc
Q 003531 323 EAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQL 369 (812)
Q Consensus 323 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 369 (812)
+..+-++.+....+.|+.......|+||.+.+|+..|.++++.+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445566666678899999999999999999999999988877543
No 460
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.18 E-value=6.5e+02 Score=25.92 Aligned_cols=80 Identities=8% Similarity=-0.024 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 457 IRYAKWIHALVIRSCF----EKNVFVMTALIDMYAKCGAVGTARALFDMMN-ERHVTTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~----~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
.+.+.+.+......+. ..++.....+.....+.|..+.-..+++... .++..-...++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3445555555444211 2334444445555555555544444444443 2344455556666666666655556666
Q ss_pred HHHhC
Q 003531 532 KMLEG 536 (812)
Q Consensus 532 ~m~~~ 536 (812)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55553
No 461
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.08 E-value=1.4e+02 Score=20.83 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=17.3
Q ss_pred HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHH
Q 003531 114 AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLK 146 (812)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 146 (812)
.+.|...++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555555555555555555555544443
No 462
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.80 E-value=3.1e+02 Score=22.12 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHH
Q 003531 488 KCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAA 526 (812)
Q Consensus 488 k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 526 (812)
+.|+.+.|.++++.+. +....|...++++...|+..-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466677777777776 6666666677776666655444
No 463
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=9.9e+02 Score=27.87 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=20.2
Q ss_pred CCCCCcchHHhHHHHHhccCChHHHHHHHHHHHH
Q 003531 234 GRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR 267 (812)
Q Consensus 234 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 267 (812)
+..|| |..+.+++....+.+.+.+++..+++
T Consensus 208 ~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 208 LPSPD---YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred CCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34455 44456666777777777777777766
No 464
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.49 E-value=6.2e+02 Score=25.42 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
-++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36778888899999999999999888555444433332233222222222222 111122222 455
Q ss_pred hcCcHHHHHHHHHHHHHh
Q 003531 554 HSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~ 571 (812)
..|++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667888888877776654
No 465
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.29 E-value=1.8e+02 Score=20.30 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=20.6
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003531 316 VEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALH 348 (812)
Q Consensus 316 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 348 (812)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777776666666665555543
No 466
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.00 E-value=3.1e+02 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHH
Q 003531 526 AVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 526 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
..++|..|...|+--... -|.....-+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455677776666554422 34444445555666666666554
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.89 E-value=2.1e+02 Score=28.51 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=6.5
Q ss_pred HHHHhCCChhHHHHHH
Q 003531 313 AAYVEGGNPEEAMRIF 328 (812)
Q Consensus 313 ~~~~~~g~~~~A~~l~ 328 (812)
.+|...|++.+|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3344444444444333
No 468
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=8e+02 Score=26.17 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH-H-HHHHhCCCCCChhHHHHHHH
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVEL-F-NKMLEGPTKPNDITFLCAIS 550 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~-~-~~m~~~g~~p~~~t~~~ll~ 550 (812)
..+..+...+++++...++|+.--+... ...-++|+...|+.- . +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 3445555666666666666654333221 122457777777642 2 22222223566666665554
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAM------------LG 618 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~l------------l~ 618 (812)
.+-. +-++. +|-+. -.+..-..|.+.+-.+|++++|.+++.+.+.+ +|+++ +.
T Consensus 115 tLr~---Vtegk-IyvEv-------ERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRT---VTEGK-IYVEV-------ERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHH---hhcCc-eEEee-------hHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 4311 11110 00000 01233345677888899999999999887533 33332 35
Q ss_pred HHHhcCCHHHHHHHHHHHhcc---CCCC----ccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEE
Q 003531 619 ACKIHKNVELGEKAANRLFEL---DPDE----GGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVH 691 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~ 691 (812)
.|...+|+-.|.-+.+++... +|+- -.+|.++..+..+.+.+=++.+.++.+-.-|-.+...--|+++--.+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 677889999998888887542 2321 237888888888999999999999888776655554445666544443
Q ss_pred EE
Q 003531 692 SF 693 (812)
Q Consensus 692 ~f 693 (812)
.|
T Consensus 260 ~f 261 (439)
T KOG1498|consen 260 SF 261 (439)
T ss_pred eE
Confidence 44
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.69 E-value=4.3e+02 Score=23.02 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 003531 543 ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQK 603 (812)
Q Consensus 543 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 603 (812)
..|.-+--.|+..-. ++.++|..|... |+-- -+.-|......+...|++++|.++++.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444334444333 888899988876 6655 567788888888899999999988864
No 470
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.20 E-value=7.6e+02 Score=25.72 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=67.3
Q ss_pred HHHHHHHHhcC---CCChHHHHHHHHHHH------hCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHH
Q 003531 493 GTARALFDMMN---ERHVTTWNVMIDGYG------THGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 493 ~~A~~~~~~m~---~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 562 (812)
+++..++++.. .|......+.|.++- ..-++.....+|+-+.. +.|+++ |.|-. -+.....-.+.|+
T Consensus 273 ~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRA-VAla~~~Gp~agL 349 (415)
T COG4941 273 DEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRA-VALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHH-HHHHHhhhHHhHH
Confidence 34444444332 345555555554431 12356666677777776 567655 44433 3555555677777
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 003531 563 HYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI 610 (812)
Q Consensus 563 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~ 610 (812)
...+.+....++.---..+..=.+.+.+.|+.+||..-|++. .+.++.
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 777766544222222233455678899999999999999887 444444
No 471
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.19 E-value=4.3e+02 Score=22.87 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=13.8
Q ss_pred hHhhhhhhcCCchHHHHHHHHH
Q 003531 649 LLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.-+-.+...|+.+||.+.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3445566778888887777654
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.13 E-value=3.2e+02 Score=31.04 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCcHH------HHHHHHHHHHHhcCCCCChhHHH
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPN---DITFLCAISACSHSGLVE------EGIHYFTSLKKDYGIEPVMDHYG 582 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~~p~~~~~~ 582 (812)
+|..+|..+|++..+.++++...... +-| ...|+..++...+.|.++ .+.+.++.. .+.-|..+|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHH
Confidence 67788888888888888888877642 122 235666777777777643 223322222 2444556666
Q ss_pred HHHHH
Q 003531 583 AMVDL 587 (812)
Q Consensus 583 ~li~~ 587 (812)
.|+.+
T Consensus 108 ll~~~ 112 (1117)
T COG5108 108 LLCQA 112 (1117)
T ss_pred HHHHh
Confidence 65543
No 473
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.31 E-value=9.4e+02 Score=26.50 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHhHhCCCCCCcch--HHHHHHH-----hcCcCChHHHHHHHHHHHHhCCCCChhHH--HHHHHHHH--hcCChhH
Q 003531 123 VSFLIRMRYDDVAPVVYN--YTYLLKV-----CGDVGEIRRGKEIHGQLIVNGFSLDLFAM--TGVVNMYA--KCGQIEE 191 (812)
Q Consensus 123 ~~~~~~m~~~g~~p~~~t--~~~ll~~-----~~~~~~~~~a~~l~~~~~~~g~~~~~~~~--~~Li~~y~--~~g~~~~ 191 (812)
.++++.+...|..|+... ..+.+.. +...++.+ +.+.+++.|..++.... .+.+...+ +.|+.+-
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHH
Q ss_pred HHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchH--HhHHHHHhccCChHHHHHHHHHHH
Q 003531 192 AYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITI--VSILPAVANVGSLRIGKAVHGYAM 266 (812)
Q Consensus 192 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~ 266 (812)
...+++.-.. ++...++.+..+..... .-.++++.+.+.|..++...- .+.+...+..| -.++...++
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll 196 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNK---IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLL 196 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCC---ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHH
Q ss_pred HhCCCCchhHH--------HHHHHHHHhCCC--hHHHHHHHhc---CCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003531 267 RAGFDSIVNVS--------TALVDMYAKCGR--VETARLVFDG---MKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLD 333 (812)
Q Consensus 267 ~~g~~~~~~~~--------~~li~~y~~~g~--~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (812)
+.|..++.... ...+...+..|. .+-...+++. ...+|..-++.|..+..... .++++.+.+
T Consensus 197 ~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~ 271 (480)
T PHA03100 197 DNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLD 271 (480)
T ss_pred HcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHH
Q ss_pred cCCCCChhhHH--HHHHHHhccCChHHHHHHHH
Q 003531 334 QGVEPTNVTIM--EALHACADLGDLERGIFVHK 364 (812)
Q Consensus 334 ~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~ 364 (812)
.|..++..... +.+......+..+....+++
T Consensus 272 ~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 272 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 474
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=24.52 E-value=9.9e+02 Score=26.46 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCCChhHHH-HHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCH
Q 003531 538 TKPNDITFL-CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLL---GRAGRLNEAWDFIQKM--PIEPGI 610 (812)
Q Consensus 538 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~---~~~g~~~eA~~~~~~~--~~~pd~ 610 (812)
..|+..|+. .++.-+-..|-..+|...+..+.. ++| +...|.-||..= ..+| +.-+.++++.| .+..|+
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~---lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE---LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADS 530 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh---CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCCh
Confidence 345555443 344555566666666666666653 233 555666665432 2233 66666666666 233567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCC
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFE-LDPD 642 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 642 (812)
..|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 7777777766777877777777777765 5554
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.22 E-value=3.5e+02 Score=27.71 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhh
Q 003531 381 LISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRS 434 (812)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (812)
++..+-+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445445544444444442 223344567777888999999998887765
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.21 E-value=4.8e+02 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcc
Q 003531 619 ACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~ 639 (812)
.+++.|+.++|.+.+.+++..
T Consensus 174 L~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhCCHHHHHHHHHHHHcC
Confidence 355556666666666666543
No 477
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=7.2e+02 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
-.++...|.+-++++--.+. ...|+ .-.+---..|...-=|..+|..-+.++++++|.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 34444455555555554444 22332 223333333333334778899999999999994
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.22 E-value=1.2e+02 Score=32.65 Aligned_cols=27 Identities=4% Similarity=-0.049 Sum_probs=16.2
Q ss_pred ccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 644 GGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.+++..+|-+|...+|+.+|.++|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665554
No 479
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.06 E-value=7.1e+02 Score=24.30 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-----VMDHYGAMVDLLGRAGRLNEAWDFIQ 602 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~eA~~~~~ 602 (812)
+..+++.. +.++..-++.|+--|.-...+.+|...|..-. |+.| +...-..-|....+.|++++|.+.++
T Consensus 14 ~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 14 EWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Q ss_pred hC-----CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003531 603 KM-----PIEPGITVFGAMLGA--CKIHKNVELGEKAAN 634 (812)
Q Consensus 603 ~~-----~~~pd~~~~~~ll~~--~~~~g~~~~a~~~~~ 634 (812)
.. ...++...|-..+.. ..+.|..++|++.++
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 480
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.01 E-value=1e+03 Score=26.18 Aligned_cols=104 Identities=9% Similarity=-0.039 Sum_probs=56.9
Q ss_pred HhcCcHHHHHHHHHHHH--HhcCCCCChh-----HHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCH-----
Q 003531 553 SHSGLVEEGIHYFTSLK--KDYGIEPVMD-----HYGAMVDLLGRAGRLNEAWDFIQKM----------PIEPGI----- 610 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~--~~~~~~p~~~-----~~~~li~~~~~~g~~~eA~~~~~~~----------~~~pd~----- 610 (812)
.-.|++..|.+.+...- +.-|..-+.. .+|.|+-...+.|.+.-+..+|.++ +++|..
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 44577777777654321 1112111111 2344555555666666555555443 223321
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhh
Q 003531 611 -----TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAA 656 (812)
Q Consensus 611 -----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 656 (812)
.+....+-.+...|+.-.|.+.|.++...--.+|..|..|+..|..
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1222333446667788888888888887766677777777777643
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.93 E-value=9.5e+02 Score=25.69 Aligned_cols=48 Identities=13% Similarity=-0.007 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHh--CCCHHHHHHHHHH
Q 003531 485 MYAKCGAVGTARALFDMMNERH--------VTTWNVMIDGYGT--HGLGKAAVELFNK 532 (812)
Q Consensus 485 ~y~k~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~--~g~~~~A~~~~~~ 532 (812)
-+.+.+++..|.++|+++..+. ...|-.+..+|.. .-++++|.+.+++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556788888888888887432 2234445555543 4466777777765
No 482
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.78 E-value=9.7e+02 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNE------RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.+.-+.+-|..||+++.|.+.|.+... .-+..|-.+|..-.-.|++......-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456678889999999999999998662 1234566666666666777776666666554
No 483
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.46 E-value=1.2e+03 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.5
Q ss_pred HHHHHHHHhCCCH
Q 003531 511 NVMIDGYGTHGLG 523 (812)
Q Consensus 511 ~~li~~~~~~g~~ 523 (812)
...|.++...|..
T Consensus 464 ~~~LkaLGN~g~~ 476 (574)
T smart00638 464 QLYLKALGNAGHP 476 (574)
T ss_pred eeHHHhhhccCCh
Confidence 3345555555553
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=3.2e+02 Score=27.60 Aligned_cols=32 Identities=3% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 573 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
|-.-..+.+..+.+-|++.++.+.+.+...+.
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33334667777888888888888888777554
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.77 E-value=2.8e+02 Score=25.72 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 003531 534 LEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE 596 (812)
Q Consensus 534 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 596 (812)
...|+++...-. .++......+..-.|.++++.+.+. +...+..+.---++.|.+.|-+.+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 344555543332 2333333344455666777666654 433333333233466666666543
No 486
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.57 E-value=2.7e+02 Score=21.46 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 491 AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 491 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
+.+.|..++..+. ++.+..||++..-+.+|+- .-..+.||..+.. .+..|.+-|.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG----------~L~~aL~ey~~ 70 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILG----------ELAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHH----------HHHHHHHHHHH
Confidence 4566777777776 4677888888877777652 1122677766543 34455555666
Q ss_pred HHHh
Q 003531 568 LKKD 571 (812)
Q Consensus 568 m~~~ 571 (812)
|...
T Consensus 71 ~~g~ 74 (82)
T PF11123_consen 71 MVGA 74 (82)
T ss_pred HcCC
Confidence 5533
No 487
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=21.23 E-value=1e+02 Score=24.23 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCC
Q 003531 703 SKRIYTFLETLIDEIKAAGYVPDTN 727 (812)
Q Consensus 703 ~~~i~~~l~~l~~~m~~~g~~p~~~ 727 (812)
..++.+.+++...+++..|+.||-.
T Consensus 7 li~il~~ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 4567777888888999999999954
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.02 E-value=1.3e+03 Score=26.43 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=21.4
Q ss_pred HHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHH
Q 003531 426 LNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALV 467 (812)
Q Consensus 426 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 467 (812)
....+++...-.-.+.....-++..|.+.|..+.+..+...+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444322334445566677777777777766666544
No 489
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.88 E-value=36 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.0
Q ss_pred eEEEecCCcccccccccccC
Q 003531 789 EIIVRDMHRFHCFKNGVCSC 808 (812)
Q Consensus 789 ~~~~~d~~~~h~~~~g~csc 808 (812)
.|=+.|.+..|+|+||+-+-
T Consensus 9 si~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEE
T ss_pred eEecCCCCEEEEEcCCceeh
Confidence 56688999999999998653
No 490
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.59 E-value=5.8e+02 Score=29.10 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=28.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhCCCh
Q 003531 345 EALHACADLGDLERGIFVHKLLDQLKL--GTDVSMTNSLISMYSKCKKV 391 (812)
Q Consensus 345 ~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~ 391 (812)
+++.+|...|++..++++++.+....- +.-...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 677788888888777777777665431 11223345555555555543
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.35 E-value=3e+02 Score=25.53 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccC
Q 003531 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVG 253 (812)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 253 (812)
+..-..++..+...+..-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33334455555555556667777777777666666666555555555444
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.03 E-value=2.5e+02 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=10.6
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 003531 412 MILGYAQNGRVNEALNYFCKM 432 (812)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m 432 (812)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455555555555555554
Done!