Query 003531
Match_columns 812
No_of_seqs 852 out of 5300
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 17:48:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003531.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1581-1585//hhsearch_pdb/003531hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 336.7 42.8 481 81-673 62-579 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 335.6 41.0 478 71-656 82-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 213.9 19.4 206 123-350 10-220 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 213.7 21.2 45 207-251 29-73 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 200.6 38.8 311 306-659 68-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 196.7 40.2 350 313-673 7-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 189.2 31.2 192 478-673 272-478 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 182.0 35.5 456 104-650 7-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 181.7 36.2 193 475-669 176-405 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 176.9 32.9 440 103-643 25-495 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=336.69 Aligned_cols=481 Identities=9% Similarity=-0.040 Sum_probs=266.4
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 73239993679985266999994489999999980599058999999968699999913299999985276992899999
Q 003531 81 LFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEI 160 (812)
Q Consensus 81 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l 160 (812)
.+.+.|.+..++..|+.++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 665567667887754663378999999999999874583479999999996--089935799999999974769999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-C------------------CCCHHHHHHHHHHHCCCHH
Q ss_conf 99999929998755899999998912994689998542999-9------------------9141999999999379957
Q 003531 161 HGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE-R------------------DLVSWNTIVAGFAQNGFAE 221 (812)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~------------------~~~~~~~li~~~~~~g~~~ 221 (812)
++.+... +++..+++.++.+|.++|++++|.++|+++.. . +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 9987335--45650899999999988669999999842488632232343343211235125899999889999839989
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHH---HH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999987699999202985999885349918999---99-999999589984469989999888079968899998
Q 003531 222 LALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK---AV-HGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVF 297 (812)
Q Consensus 222 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~---~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 297 (812)
+|+.+|++|.+.+ |+..+....+..+.......... .+ +..+...+......+++.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999729--32569999999850346156789998657742344308899999999999980731399999999
Q ss_pred HCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 32899--9900599999999909990389999999998499999423999999975348817999999998660889871
Q 003531 298 DGMKS--RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDV 375 (812)
Q Consensus 298 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 375 (812)
+.+.+ ++..
T Consensus 296 ~~~~~~~~~~~--------------------------------------------------------------------- 306 (597)
T 2xpi_A 296 SSINGLEKSSD--------------------------------------------------------------------- 306 (597)
T ss_dssp HTSTTGGGCHH---------------------------------------------------------------------
T ss_pred HHHHCCCCHHH---------------------------------------------------------------------
T ss_conf 87643883099---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 57879999988179948999999842789841199999999986994799999999752898889132775999985206
Q 003531 376 SMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELS 455 (812)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 455 (812)
+|+.++.+|.+.|++++|.++|+++...+ +.+..++..++.++...|
T Consensus 307 --------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 307 --------------------------------LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp --------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred --------------------------------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHC
T ss_conf --------------------------------99999999998468999999999999729-553799999999999827
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 378999999999982998756499999999991199999999997339---99968999999999857998999999999
Q 003531 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNK 532 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (812)
+.+.+..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7779999999998518-354799999999999835699999999999872977789999999999975777999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------C
Q ss_conf 782999998368999999999208599999999998884099987559999999984229979999999859-------9
Q 003531 533 MLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-------P 605 (812)
Q Consensus 533 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-------~ 605 (812)
+...+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+...|..++.+|.+.|++++|.++++++ +
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99868-134389999999999857999999999999984--888767999999999981899999999999998532345
Q ss_pred CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9999--9799999999983187789999999985368888630452730321048923899999999876
Q 003531 606 IEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 606 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
..|+ ..+|..++.+|...|++++|...++++++++|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 4535499999999999998047999999999999738997389999999999817899999999999720
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=335.62 Aligned_cols=478 Identities=12% Similarity=0.004 Sum_probs=345.4
Q ss_pred CCHHHH-HHHHHHHCCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 865899-99997323999367998526699--999448999999998059905899999996869999991329999998
Q 003531 71 QHLFQT-KLVSLFCKYNSLSDAARVFEPIP--DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKV 147 (812)
Q Consensus 71 ~~~~~~-~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 147 (812)
.+...+ .++..|.+.|++++|..+|+.+. .|+..+|+.++..|...|++++|+.+|+++.. .+++..++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 8999999999999874583479999999996089935799999999974769999999998733--54565089999999
Q ss_pred HCCCCCHHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC---CCHHHH
Q ss_conf 52769928999999999992---------------999875589999999891299468999854299999---141999
Q 003531 148 CGDVGEIRRGKEIHGQLIVN---------------GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD---LVSWNT 209 (812)
Q Consensus 148 ~~~~~~~~~a~~l~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~ 209 (812)
+.+.|++++|..+++++... +.+.+..+++.++..|.+.|++++|...|+++.+.+ ...|..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99886699999998424886322323433432112351258999998899998399899999999999729325699999
Q ss_pred HHHHHHHCCCHHHHHH--H-HHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999993799579999--9-999987699999202985999885349918999999999995899844699899998880
Q 003531 210 IVAGFAQNGFAELALD--L-VTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK 286 (812)
Q Consensus 210 li~~~~~~g~~~~A~~--l-~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 286 (812)
+...+...+..+.+.. + +..+...+..+...+|..++..+.+.|+++.|..++..+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
T ss_conf 99850346156789998657742344308899999999999980731399999999876438--8309999999999998
Q ss_pred CCCHHHHHHHHHCCCC---CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7996889999832899---9900599999999909990389999999998499999423999999975348817999999
Q 003531 287 CGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVH 363 (812)
Q Consensus 287 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 363 (812)
.|++++|..+|+++.+ .+..+|+.++.++.+.|++++|..+++++.... |
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~------------------------- 370 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--P------------------------- 370 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-------------------------
T ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--C-------------------------
T ss_conf 4689999999999997295537999999999998277779999999998518--3-------------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9986608898715787999998817994899999984278---9841199999999986994799999999752898889
Q 003531 364 KLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD 440 (812)
Q Consensus 364 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 440 (812)
.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++...+ |
T Consensus 371 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~- 438 (597)
T 2xpi_A 371 ---------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--Q- 438 (597)
T ss_dssp ---------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--T-
T ss_pred ---------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C-
T ss_conf ---------5479999999999983569999999999987297778999999999997577799999999999868--1-
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 13277599998520637899999999998299875649999999999119999999999733999968999999999857
Q 003531 441 SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTH 520 (812)
Q Consensus 441 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 520 (812)
.+..+|+.++.+|.+.
T Consensus 439 ----------------------------------------------------------------~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 439 ----------------------------------------------------------------GTHLPYLFLGMQHMQL 454 (597)
T ss_dssp ----------------------------------------------------------------TCSHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHC
T ss_conf ----------------------------------------------------------------3438999999999985
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHHCCCHH
Q ss_conf 9989999999997829999983689999999992085999999999988840---99987--559999999984229979
Q 003531 521 GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDY---GIEPV--MDHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~~g~~~ 595 (812)
|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 79999999999999848-88767999999999981899999999999998532345453549999999999999804799
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999859-9999-997999999999831877899999999853688886304527303210
Q 003531 596 EAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAA 656 (812)
Q Consensus 596 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 656 (812)
+|.+.++++ ...| +..+|..++..|...|+.++|...++++++++|+++..+..|+++|..
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999999999973899738999999999981789999999999972088874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=213.93 Aligned_cols=206 Identities=10% Similarity=0.064 Sum_probs=102.0
Q ss_pred HHHHHHHHHCCCCCCCC-HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 99999968699999913-29999998527699289999999999929998755899999998912994689998542999
Q 003531 123 VSFLIRMRYDDVAPVVY-NYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE 201 (812)
Q Consensus 123 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 201 (812)
..+.+++.+.+..+.+. .++.+|.+|++.|++++|.+++++|.+.|+.||..+||.||.+|++.+...++
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH---------
T ss_conf 99999999826668979999999999985989999999999999818998783999999999857830433---------
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99141999999999379957999999999876999992029859998853499189999999999958998446998999
Q 003531 202 RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALV 281 (812)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 281 (812)
.+.+..+.|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.+|
T Consensus 81 -------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI 147 (501)
T 4g26_A 81 -------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147 (501)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred -------------HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHH
T ss_conf -------------3212499999999999980899989999999999984697788999999999728988611104899
Q ss_pred HHHHHCCCHHHHHHHHHCCCC----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 988807996889999832899----990059999999990999038999999999849999942399999997
Q 003531 282 DMYAKCGRVETARLVFDGMKS----RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHAC 350 (812)
Q Consensus 282 ~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 350 (812)
.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999888999999999999862999999999999999853898999999999999948996999999999998
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=213.69 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
Q ss_conf 999999999379957999999999876999992029859998853
Q 003531 207 WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251 (812)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 251 (812)
++.+|.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 999999998598999999999999981899878399999999985
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=200.56 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 05999999999099903899999999984999994-23999999975348817999999998660889871578799999
Q 003531 306 VSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN-VTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISM 384 (812)
Q Consensus 306 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 384 (812)
.+|..+...+.+.|++++|...|+++... .|+. .++..+..++...|+++.+...+..+.+.. +.+...+..+...
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 99999999998779999999999999874--96539999999999998589999999999999759-8968999999999
Q ss_pred HHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 8817994899999984278---9841199999999986994799999999752898889132775999985206378999
Q 003531 385 YSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAK 461 (812)
Q Consensus 385 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 461 (812)
+...|++++|...|+++.. .+..+|..+...+...|++++|...|+++... .|+
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------- 201 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN--------------------- 201 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT---------------------
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCC---------------------
T ss_conf 998468999999999998729897899999999999859999999999999855--988---------------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999982998756499999999991199999999997339---99968999999999857998999999999782999
Q 003531 462 WIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPT 538 (812)
Q Consensus 462 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (812)
+...+..+...+...|++++|...|++.. ..+...|..+...|...|++++|+..|+++.. .
T Consensus 202 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 266 (388)
T 1w3b_A 202 -------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L 266 (388)
T ss_dssp -------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--H
T ss_conf -------------6799999999999857899999999999852968789999999999986889999999999986--4
Q ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHH
Q ss_conf 998-368999999999208599999999998884099987559999999984229979999999859-9999-9979999
Q 003531 539 KPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGA 615 (812)
Q Consensus 539 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 615 (812)
.|+ ..++..+..++...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +...|..
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9998899999999999869979999999999864--94449999999999998489999999999998609873999977
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999831877899999999853688886304527303210489
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
+...+...|++++|...+++++++.|++...+..++.++...|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=196.70 Aligned_cols=350 Identities=14% Similarity=0.143 Sum_probs=263.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9999099903899999999984999994-239999999753488179999999986608898715787999998817994
Q 003531 313 AAYVEGGNPEEAMRIFQKMLDQGVEPTN-VTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKV 391 (812)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 391 (812)
..+.+.|++++|...+.++... .|+. ..+..+...+...++.+.+...+....+.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 899999984278---984119999999998699479999999975289888913-2775999985206378999999999
Q 003531 392 DRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF-TMVSVIPALAELSVIRYAKWIHALV 467 (812)
Q Consensus 392 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~ 467 (812)
++|...|+++.. .+..+|..+...+.+.|++++|...|.++... .|+.. .+..+...+...|+.+.|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998749653999999999999858999999999999975--9896899999999999846899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HH
Q ss_conf 982998756499999999991199999999997339---99968999999999857998999999999782999998-36
Q 003531 468 IRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DI 543 (812)
Q Consensus 468 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 543 (812)
.+.. +.+...+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 8729-897899999999999859999999999999855988679999999999985789999999999985--2968789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHH
Q ss_conf 899999999920859999999999888409998-7559999999984229979999999859-99-99997999999999
Q 003531 544 TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PI-EPGITVFGAMLGAC 620 (812)
Q Consensus 544 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~ 620 (812)
++..+..++...|++++|...|+.+.+ ..| +...+..++.++.+.|++++|.+.++++ .. +.+..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999986889999999999986---49998899999999999869979999999999864944499999999999
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 83187789999999985368888630452730321048923899999999876
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
...|++++|...+++++++.|++...+..++.+|...|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=189.24 Aligned_cols=192 Identities=11% Similarity=0.020 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999999911999999999973399---996899999999985799899999999978299999-8368999999999
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACS 553 (812)
Q Consensus 478 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 553 (812)
.+..+...|...|++++|...|+.+.+ .+...|..+...|...|++++|+..|+++... .| +...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_conf 99999999998888999999999986138677899999999999807799999999999873--8502899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHH---
Q ss_conf 208599999999998884099987559999999984229979999999859----99999----9799999999983---
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPG----ITVFGAMLGACKI--- 622 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~--- 622 (812)
..|++++|...++.+.+. .+.+...+..++..+.+.|++++|...++++ +..++ ...|..+...+..
T Consensus 350 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 868999999999999987--546778999999999878899999999999997612332178999999999999866332
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 187789999999985368888630452730321048923899999999876
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.|+++.|...++++++..|++...+..++.+|...|++++|...++++.+.
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 588899999999998758555899999999999825799999999999876
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=182.00 Aligned_cols=456 Identities=9% Similarity=-0.043 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 48999999998059905899999996869999991329999998527699289999999999929998755899999998
Q 003531 104 ALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMY 183 (812)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~~ 183 (812)
..|......+...|++++|+..|+++.... |+...+..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf 999998789998602789999999998559--227899868899998854999999998776069-37899999888999
Q ss_pred HHCCCHHHHHHHHCCCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 912994689998542999---99141999999999379957999999999876999992029859998853499189999
Q 003531 184 AKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKA 260 (812)
Q Consensus 184 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 260 (812)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------- 150 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE------------- 150 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-------------
T ss_conf 9876688899999999955987511378999999999999999999998999987665126772467-------------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHH---CCCHHHHHHHHHHHHH---
Q ss_conf 9999999589984469989999888079968899998328999-90059999999990---9990389999999998---
Q 003531 261 VHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSR-NVVSWNSMIAAYVE---GGNPEEAMRIFQKMLD--- 333 (812)
Q Consensus 261 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~--- 333 (812)
........|+.......+..+...... ..+..+ +...+......+.. .|++++|...|+++..
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 151 ---RKDKQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHCCCCCHHHHHHHHHHHCCHHHHH-------HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ---886344786158999998625878888-------8725995888999989999876233229999999999998866
Q ss_pred --CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCH
Q ss_conf --4999994239999999753488179999999986608898715787999998817994899999984278--984119
Q 003531 334 --QGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG--KTLVSW 409 (812)
Q Consensus 334 --~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~ 409 (812)
....|+..... +.+...+..+...+...|++++|...|+.+.. ++...|
T Consensus 221 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 273 (514)
T 2gw1_A 221 EQLDKNNEDEKLK---------------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273 (514)
T ss_dssp HHTTTSTTCHHHH---------------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHCCCCCCCCCC---------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 5422381001148---------------------------2789999999999998789999999999998638648999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999869947999999997528988891327759999852063789999999999829987564999999999911
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 489 (812)
..+...+...|++++|...++++.. .. +.+...+..+...|...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------------------------------~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALK-----------------------------------LD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHT-----------------------------------TC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------------CC-CCCHHHHHHHHHHHHHH
T ss_conf 9999999988889999999999861-----------------------------------38-67789999999999980
Q ss_pred CCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999997339---9996899999999985799899999999978299999-8368999999999208599999999
Q 003531 490 GAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYF 565 (812)
Q Consensus 490 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 565 (812)
|++++|...|+... ..+...|..+...+...|++++|+..++++... .| +...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 77999999999998738502899999999999868999999999999987--5467789999999998788999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 998884099987----5599999999842---29979999999859-9999-9979999999998318778999999998
Q 003531 566 TSLKKDYGIEPV----MDHYGAMVDLLGR---AGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRL 636 (812)
Q Consensus 566 ~~m~~~~~~~p~----~~~~~~l~~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 636 (812)
+.+.....-.+. ...+..++..+.+ .|++++|...++++ ...| +...|..+...+...|+.+.|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99997612332178999999999999866332588899999999998758555899999999999825799999999999
Q ss_pred HCCCCCCCCCHHHH
Q ss_conf 53688886304527
Q 003531 637 FELDPDEGGYHVLL 650 (812)
Q Consensus 637 ~~~~p~~~~~~~~l 650 (812)
+++.|+++.....+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHHCCCCHHHHHHH
T ss_conf 87661468899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=181.66 Aligned_cols=193 Identities=10% Similarity=0.074 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH-HHHH--
Q ss_conf 56499999999991199999999997339---99968999999999857998999999999782999998368-9999--
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT-FLCA-- 548 (812)
Q Consensus 475 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l-- 548 (812)
+..++..+..+|.+.|++++|...|+.+. ..+...|..+...|...|++++|+..|+++.. ..|+... +..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_conf 7699999999998779999999999999986889879999999999975999999999999987--59980899999999
Q ss_pred ----------HHHHHHCCCHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHH
Q ss_conf ----------99999208599999999998884099987--559999999984229979999999859-9999-997999
Q 003531 549 ----------ISACSHSGLVEEGIHYFTSLKKDYGIEPV--MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFG 614 (812)
Q Consensus 549 ----------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 614 (812)
..++...|++++|...|+.+.......|. ...+..++.++.+.|++++|...++++ ...| +...|.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999871799999999999985087336899999999999999878899999999999884845489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHH------------HHHHHCC-----CCHHHHHHHHH
Q ss_conf 9999998318778999999998536888863045273------------0321048-----92389999999
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA------------NIYAAAS-----MWDKLAKVRTI 669 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 669 (812)
.++.+|...|+++.|...++++++++|+++..+..++ +.|...| ..+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 999999870379999999999988593529999999999998643350569998189866898999999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=176.94 Aligned_cols=440 Identities=8% Similarity=-0.006 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44899999999805990589999999686999999132999999852769928999999999992999875589999999
Q 003531 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNM 182 (812)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 182 (812)
...|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|+++.|...+..+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 9999999999998642999999999998638-9984899999999998689999999999998609-8628999999999
Q ss_pred HHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89129946899985429999914199999999937995799999999987699999202985999885349918999999
Q 003531 183 YAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVH 262 (812)
Q Consensus 183 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 262 (812)
|...|++++|...|+.+ ..+....+..+..+...+....|+..++.+.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHCCCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC----------------------
T ss_conf 99838999999999998-6487878588999998778988999999999747--4545----------------------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCH---HHHHHHHHHHHC--------CCHHHHHHHHHHH
Q ss_conf 99999589984469989999888079968899998328999900---599999999909--------9903899999999
Q 003531 263 GYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVV---SWNSMIAAYVEG--------GNPEEAMRIFQKM 331 (812)
Q Consensus 263 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m 331 (812)
....|+ ...+..|....+.+.+...+......+.. .+..+...+... +++++|..+++++
T Consensus 158 -----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 158 -----SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCH----HHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----434506----75799999744749999987632564617899999998788764020688887999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 98499999423999999975348817999999998660889871578799999881799489999998427898411999
Q 003531 332 LDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNA 411 (812)
Q Consensus 332 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 411 (812)
... .|+. ...+..+. .+|..
T Consensus 229 l~~--~p~~----------------------------------~~~~~~~~------------------------~~~~~ 248 (537)
T 3fp2_A 229 LSA--NTVD----------------------------------DPLRENAA------------------------LALCY 248 (537)
T ss_dssp HC----CCC----------------------------------HHHHHHHH------------------------HHHHH
T ss_pred HHH--CCCC----------------------------------CHHHHHHH------------------------HHHHH
T ss_conf 987--8774----------------------------------04459999------------------------99999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999986994799999999752898889132775999985206378999999999982998756499999999991199
Q 003531 412 MILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 491 (812)
+...+...|++++|...|++.... .|+...+..+...+...|+++.+...+..+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 999987545578999999999866--9874699999999998037999999999975459-9987999999999986689
Q ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999997339---99968999999999857998999999999782999998-36899999999920859999999999
Q 003531 492 VGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 492 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
+++|...|+... ..+...|..+...+...|++++|+..++++... .|+ ...+..+...+...|++++|...|+.
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999859997799999999999847799999999999873--999859999999999883788999999999
Q ss_pred HHHHCCCCC----CHHHHHHHHHHHHHC----------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 888409998----755999999998422----------9979999999859-9999-99799999999983187789999
Q 003531 568 LKKDYGIEP----VMDHYGAMVDLLGRA----------GRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 568 m~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
+.+...-.+ ....+..++.++.+. |++++|...++++ ...| +...|..+...+...|+.+.|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98709762446888999998899999976401002247579999999999997499978999999999998514999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999985368888
Q 003531 632 AANRLFELDPDE 643 (812)
Q Consensus 632 ~~~~~~~~~p~~ 643 (812)
.+++++++.|+.
T Consensus 484 ~~~~al~~~~~~ 495 (537)
T 3fp2_A 484 LFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHC--C
T ss_pred HHHHHHHHCCCC
T ss_conf 999999868993
Done!