Query 003532
Match_columns 812
No_of_seqs 299 out of 2338
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 01:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 1.4E-63 3.1E-68 521.7 88.4 764 16-786 36-806 (1074)
2 COG1196 Smc Chromosome segrega 100.0 3.2E-52 6.9E-57 483.4 87.8 642 20-681 1-716 (1163)
3 KOG0964 Structural maintenance 100.0 1.2E-47 2.5E-52 391.8 76.0 650 20-703 1-742 (1200)
4 KOG0996 Structural maintenance 100.0 1.7E-47 3.7E-52 399.8 77.4 587 16-624 80-760 (1293)
5 KOG0933 Structural maintenance 100.0 2.9E-47 6.2E-52 390.9 66.9 562 20-624 1-667 (1174)
6 TIGR02169 SMC_prok_A chromosom 100.0 2.2E-45 4.8E-50 442.7 88.1 217 21-250 1-227 (1164)
7 KOG0018 Structural maintenance 100.0 2.7E-44 5.8E-49 373.3 71.2 687 19-744 1-755 (1141)
8 TIGR02168 SMC_prok_B chromosom 100.0 2.6E-40 5.6E-45 400.8 89.0 257 21-286 1-265 (1179)
9 KOG0979 Structural maintenance 100.0 2.4E-40 5.2E-45 342.2 72.3 659 12-703 12-700 (1072)
10 PRK02224 chromosome segregatio 100.0 1.1E-31 2.3E-36 309.8 74.6 154 20-189 1-162 (880)
11 PRK03918 chromosome segregatio 100.0 1.9E-28 4.1E-33 284.1 78.1 178 20-211 1-180 (880)
12 PRK01156 chromosome segregatio 100.0 2.4E-27 5.2E-32 273.1 74.7 174 20-209 1-182 (895)
13 COG0419 SbcC ATPase involved i 100.0 7.5E-25 1.6E-29 250.1 73.4 186 20-217 1-195 (908)
14 PRK04863 mukB cell division pr 100.0 1.3E-22 2.8E-27 233.5 77.3 52 19-70 4-55 (1486)
15 PHA02562 46 endonuclease subun 100.0 4.9E-26 1.1E-30 250.1 47.5 198 19-233 1-207 (562)
16 TIGR00606 rad50 rad50. This fa 100.0 7.5E-23 1.6E-27 242.0 74.2 152 21-186 2-179 (1311)
17 PRK10246 exonuclease subunit S 100.0 1.6E-20 3.5E-25 216.0 78.1 186 20-216 1-207 (1047)
18 TIGR02680 conserved hypothetic 99.9 1.7E-18 3.7E-23 203.1 80.5 79 20-98 2-92 (1353)
19 TIGR00618 sbcc exonuclease Sbc 99.9 7.3E-22 1.6E-26 229.3 51.6 187 20-217 1-204 (1042)
20 TIGR00634 recN DNA repair prot 99.9 1.8E-21 3.9E-26 209.6 41.3 191 21-234 1-202 (563)
21 PRK10869 recombination and rep 99.9 2E-21 4.3E-26 206.2 39.2 190 21-234 1-198 (553)
22 TIGR03185 DNA_S_dndD DNA sulfu 99.9 1.4E-19 3.1E-24 198.9 47.9 146 20-172 1-164 (650)
23 KOG0962 DNA repair protein RAD 99.9 7E-16 1.5E-20 168.8 59.0 167 19-197 1-192 (1294)
24 COG4913 Uncharacterized protei 99.9 6.1E-15 1.3E-19 148.4 59.6 61 6-66 1-61 (1104)
25 COG0497 RecN ATPase involved i 99.9 8.2E-18 1.8E-22 170.4 38.7 189 21-233 1-197 (557)
26 PF12128 DUF3584: Protein of u 99.8 6.9E-14 1.5E-18 164.2 74.4 37 37-74 13-49 (1201)
27 COG1196 Smc Chromosome segrega 99.8 4.3E-14 9.3E-19 166.0 63.4 78 162-244 153-230 (1163)
28 KOG0996 Structural maintenance 99.8 9E-14 1.9E-18 148.4 56.9 242 271-517 430-730 (1293)
29 KOG0250 DNA repair protein RAD 99.8 2E-13 4.3E-18 146.1 59.3 252 186-438 214-466 (1074)
30 COG4717 Uncharacterized conser 99.8 2.7E-13 6E-18 140.4 56.2 113 20-150 1-117 (984)
31 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.6E-18 5.7E-23 166.3 16.9 148 20-172 1-156 (251)
32 TIGR02169 SMC_prok_A chromosom 99.8 8.4E-13 1.8E-17 160.3 65.2 32 481-517 604-635 (1164)
33 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.6E-17 3.4E-22 160.0 18.3 138 22-174 1-145 (247)
34 PF02463 SMC_N: RecF/RecN/SMC 99.7 2.5E-17 5.5E-22 156.9 15.3 127 21-155 1-135 (220)
35 PRK14079 recF recombination pr 99.7 3.6E-16 7.8E-21 157.2 23.2 123 20-170 1-123 (349)
36 KOG0933 Structural maintenance 99.7 2.4E-13 5.1E-18 142.7 44.1 219 168-392 216-467 (1174)
37 PRK00064 recF recombination pr 99.7 5E-16 1.1E-20 157.2 23.0 101 20-136 1-102 (361)
38 PF13555 AAA_29: P-loop contai 99.7 1E-17 2.2E-22 115.9 6.1 49 22-70 1-51 (62)
39 cd03242 ABC_RecF RecF is a rec 99.7 3.6E-16 7.9E-21 152.5 18.7 100 22-137 1-101 (270)
40 cd03241 ABC_RecN RecN ATPase i 99.7 1.3E-16 2.9E-21 156.1 13.8 113 22-147 1-120 (276)
41 COG3096 MukB Uncharacterized p 99.7 2.9E-10 6.2E-15 115.6 58.3 48 19-66 4-51 (1480)
42 KOG0964 Structural maintenance 99.7 3.3E-10 7.1E-15 119.1 56.2 38 489-532 608-645 (1200)
43 cd03277 ABC_SMC5_euk Eukaryoti 99.7 5.2E-16 1.1E-20 144.3 11.9 79 21-99 2-80 (213)
44 TIGR02168 SMC_prok_B chromosom 99.6 5.9E-10 1.3E-14 136.2 65.8 46 474-521 520-565 (1179)
45 TIGR00611 recf recF protein. A 99.6 5.8E-14 1.2E-18 141.7 24.3 78 20-100 1-78 (365)
46 cd03272 ABC_SMC3_euk Eukaryoti 99.6 3.4E-15 7.4E-20 144.7 14.7 142 22-172 1-148 (243)
47 PF13514 AAA_27: AAA domain 99.6 4.7E-09 1E-13 123.8 67.5 103 47-169 1-103 (1111)
48 COG1195 RecF Recombinational D 99.6 6.3E-14 1.4E-18 135.8 20.8 122 20-167 1-123 (363)
49 cd03239 ABC_SMC_head The struc 99.6 1.2E-15 2.6E-20 137.3 8.2 78 22-99 1-82 (178)
50 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2.8E-15 6.1E-20 138.0 9.3 79 22-100 1-79 (198)
51 cd03240 ABC_Rad50 The catalyti 99.5 6.7E-14 1.5E-18 129.8 11.0 90 22-120 1-92 (204)
52 cd03279 ABC_sbcCD SbcCD and ot 99.5 4.2E-14 9.2E-19 133.0 9.7 90 20-119 1-95 (213)
53 PF13476 AAA_23: AAA domain; P 99.5 5.1E-14 1.1E-18 133.4 9.8 49 24-72 1-49 (202)
54 KOG0018 Structural maintenance 99.5 9.5E-08 2E-12 102.7 55.1 32 483-517 584-616 (1141)
55 PRK02224 chromosome segregatio 99.4 8.8E-08 1.9E-12 111.8 57.0 9 46-54 46-54 (880)
56 KOG0979 Structural maintenance 99.4 2.5E-07 5.4E-12 99.0 48.3 179 186-364 181-359 (1072)
57 KOG0161 Myosin class II heavy 99.3 3.6E-06 7.8E-11 99.5 60.7 159 636-799 1242-1401(1930)
58 KOG0161 Myosin class II heavy 99.3 1.9E-06 4.1E-11 101.7 57.1 91 276-366 938-1028(1930)
59 PRK04863 mukB cell division pr 99.3 3.3E-06 7.2E-11 99.6 57.8 44 479-523 687-730 (1486)
60 cd03278 ABC_SMC_barmotin Barmo 99.3 5.4E-12 1.2E-16 116.2 8.3 78 22-99 1-85 (197)
61 cd03274 ABC_SMC4_euk Eukaryoti 99.3 1.1E-11 2.4E-16 115.5 8.0 78 20-98 1-85 (212)
62 COG5293 Predicted ATPase [Gene 99.1 2.9E-06 6.2E-11 82.3 37.9 52 19-72 4-66 (591)
63 TIGR00606 rad50 rad50. This fa 99.1 6E-05 1.3E-09 91.1 54.3 15 689-703 1029-1043(1311)
64 COG3950 Predicted ATP-binding 99.1 7.2E-11 1.6E-15 110.2 3.2 52 20-71 1-53 (440)
65 KOG4674 Uncharacterized conser 99.0 8.4E-05 1.8E-09 86.7 50.3 57 645-701 1242-1298(1822)
66 PF11398 DUF2813: Protein of u 98.9 4.5E-09 9.7E-14 104.2 10.8 51 20-71 1-51 (373)
67 PF12128 DUF3584: Protein of u 98.9 0.00063 1.4E-08 81.4 59.2 13 49-61 49-61 (1201)
68 PF00261 Tropomyosin: Tropomyo 98.9 1.2E-05 2.6E-10 76.3 30.8 36 192-227 7-42 (237)
69 cd03227 ABC_Class2 ABC-type Cl 98.8 3.9E-09 8.3E-14 94.3 5.7 68 25-96 2-71 (162)
70 PF04310 MukB: MukB N-terminal 98.8 7E-09 1.5E-13 89.3 6.5 48 19-66 4-51 (227)
71 PF00261 Tropomyosin: Tropomyo 98.8 2E-05 4.3E-10 74.9 30.4 47 392-438 181-227 (237)
72 PF13166 AAA_13: AAA domain 98.8 0.00014 3E-09 83.2 42.9 42 29-70 1-44 (712)
73 COG4637 Predicted ATPase [Gene 98.7 7.2E-09 1.6E-13 96.2 2.5 45 20-65 1-45 (373)
74 COG3593 Predicted ATP-dependen 98.7 2.5E-08 5.3E-13 103.7 5.4 50 20-69 1-50 (581)
75 PF07888 CALCOCO1: Calcium bin 98.6 0.00067 1.5E-08 70.1 36.6 9 24-32 6-14 (546)
76 PF13175 AAA_15: AAA ATPase do 98.6 3.7E-08 8E-13 105.1 5.4 49 22-70 1-50 (415)
77 COG1106 Predicted ATPases [Gen 98.6 4.7E-08 1E-12 96.2 3.9 47 21-68 1-48 (371)
78 PF01576 Myosin_tail_1: Myosin 98.5 1.8E-08 3.8E-13 113.6 0.0 44 636-679 550-593 (859)
79 COG4674 Uncharacterized ABC-ty 98.5 6E-08 1.3E-12 83.4 2.0 40 24-63 12-52 (249)
80 PF10174 Cast: RIM-binding pro 98.4 0.0061 1.3E-07 67.2 55.0 55 713-767 547-601 (775)
81 PHA02562 46 endonuclease subun 98.4 0.00043 9.4E-09 76.8 29.9 38 193-230 174-211 (562)
82 COG3910 Predicted ATPase [Gene 98.3 4.1E-07 9E-12 77.8 4.1 36 37-72 32-67 (233)
83 KOG0994 Extracellular matrix g 98.3 0.0091 2E-07 65.8 49.3 8 2-9 896-903 (1758)
84 KOG0977 Nuclear envelope prote 98.3 0.0038 8.3E-08 64.8 32.4 32 200-231 42-73 (546)
85 COG4559 ABC-type hemin transpo 98.3 9.1E-07 2E-11 77.6 4.6 40 24-63 8-48 (259)
86 PF01576 Myosin_tail_1: Myosin 98.2 1.9E-07 4.2E-12 105.4 0.0 124 637-765 382-505 (859)
87 KOG0994 Extracellular matrix g 98.2 0.0099 2.1E-07 65.5 34.3 8 429-436 1731-1738(1758)
88 PRK04778 septation ring format 98.2 0.012 2.7E-07 64.3 36.0 55 177-231 96-150 (569)
89 PRK04778 septation ring format 98.2 0.01 2.2E-07 64.9 35.3 6 261-266 283-288 (569)
90 KOG4674 Uncharacterized conser 98.2 0.031 6.7E-07 66.4 55.6 22 417-438 860-881 (1822)
91 PRK11637 AmiB activator; Provi 98.2 0.0029 6.3E-08 66.8 30.1 14 218-231 44-57 (428)
92 COG1120 FepC ABC-type cobalami 98.2 2.1E-06 4.6E-11 80.3 5.8 34 34-67 19-53 (258)
93 COG4372 Uncharacterized protei 98.2 0.0071 1.5E-07 58.1 30.9 15 202-216 76-90 (499)
94 PRK11637 AmiB activator; Provi 98.2 0.0044 9.6E-08 65.4 30.3 85 210-299 43-128 (428)
95 PRK14265 phosphate ABC transpo 98.1 4.2E-06 9.1E-11 82.3 6.8 59 5-63 2-67 (274)
96 PF07888 CALCOCO1: Calcium bin 98.1 0.016 3.5E-07 60.3 37.7 19 205-223 162-180 (546)
97 COG4604 CeuD ABC-type enteroch 98.1 2.7E-06 5.8E-11 73.7 4.2 34 34-67 18-52 (252)
98 PF10174 Cast: RIM-binding pro 98.1 0.028 6.1E-07 62.2 55.5 38 640-677 466-503 (775)
99 PF09726 Macoilin: Transmembra 98.1 0.006 1.3E-07 67.1 29.8 31 413-443 620-650 (697)
100 KOG0977 Nuclear envelope prote 98.1 0.017 3.8E-07 60.1 31.1 34 195-228 44-77 (546)
101 PF12718 Tropomyosin_1: Tropom 98.0 0.0017 3.6E-08 55.5 19.7 61 644-704 5-65 (143)
102 COG4938 Uncharacterized conser 98.0 5E-06 1.1E-10 76.0 4.4 46 22-68 2-47 (374)
103 PRK01156 chromosome segregatio 98.0 0.066 1.4E-06 63.1 59.1 19 162-180 147-165 (895)
104 COG1126 GlnQ ABC-type polar am 98.0 8.8E-06 1.9E-10 72.2 5.5 31 34-64 19-50 (240)
105 COG0411 LivG ABC-type branched 98.0 1.7E-06 3.8E-11 78.3 1.0 35 29-63 13-51 (250)
106 cd03296 ABC_CysA_sulfate_impor 98.0 8.8E-06 1.9E-10 78.6 6.0 46 18-63 1-49 (239)
107 PRK13539 cytochrome c biogenes 98.0 1.1E-05 2.4E-10 75.8 6.1 46 18-63 1-49 (207)
108 COG0396 sufC Cysteine desulfur 98.0 1.3E-05 2.9E-10 71.8 5.8 46 18-63 2-51 (251)
109 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 7E-06 1.5E-10 76.4 4.2 30 34-63 21-51 (254)
110 COG4133 CcmA ABC-type transpor 98.0 8E-06 1.7E-10 70.5 4.2 33 33-65 18-51 (209)
111 PF06470 SMC_hinge: SMC protei 98.0 4.2E-05 9.1E-10 64.6 8.6 115 474-592 3-119 (120)
112 KOG1029 Endocytic adaptor prot 97.9 0.042 9.1E-07 58.2 34.6 29 388-416 550-578 (1118)
113 PF12718 Tropomyosin_1: Tropom 97.9 0.0038 8.2E-08 53.4 19.9 63 639-701 7-69 (143)
114 PRK14271 phosphate ABC transpo 97.9 2.3E-05 5E-10 77.1 7.7 58 5-63 5-68 (276)
115 cd03215 ABC_Carb_Monos_II This 97.9 1.3E-05 2.9E-10 73.4 5.4 43 19-63 4-47 (182)
116 COG1579 Zn-ribbon protein, pos 97.9 0.006 1.3E-07 56.3 22.0 9 458-466 177-185 (239)
117 PRK13538 cytochrome c biogenes 97.9 1.8E-05 3.8E-10 74.3 6.1 45 19-63 1-48 (204)
118 PRK09039 hypothetical protein; 97.9 0.0032 6.9E-08 63.3 22.3 64 719-782 121-184 (343)
119 COG1579 Zn-ribbon protein, pos 97.9 0.0061 1.3E-07 56.2 21.8 50 716-765 91-140 (239)
120 PF09726 Macoilin: Transmembra 97.9 0.048 1E-06 60.2 32.6 66 378-443 592-657 (697)
121 cd03238 ABC_UvrA The excision 97.9 1.2E-05 2.5E-10 72.2 4.3 30 33-62 11-41 (176)
122 PRK13540 cytochrome c biogenes 97.9 2.1E-05 4.5E-10 73.5 6.2 45 19-63 1-48 (200)
123 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 2.2E-05 4.8E-10 68.4 5.9 31 33-63 16-47 (144)
124 KOG0971 Microtubule-associated 97.9 0.059 1.3E-06 58.2 35.9 26 775-800 1024-1049(1243)
125 PRK11231 fecE iron-dicitrate t 97.9 1.8E-05 3.9E-10 77.2 5.9 45 18-63 1-49 (255)
126 PRK11248 tauB taurine transpor 97.9 2.1E-05 4.6E-10 76.4 6.3 45 19-63 1-48 (255)
127 PRK11124 artP arginine transpo 97.9 2E-05 4.4E-10 76.3 6.0 46 18-63 1-49 (242)
128 PRK14273 phosphate ABC transpo 97.9 2.3E-05 5E-10 76.5 6.1 45 19-63 7-54 (254)
129 TIGR02673 FtsE cell division A 97.9 2.2E-05 4.7E-10 74.5 5.7 45 19-63 1-49 (214)
130 PRK14261 phosphate ABC transpo 97.9 2.3E-05 5E-10 76.4 6.1 46 19-64 6-54 (253)
131 TIGR02315 ABC_phnC phosphonate 97.9 2.2E-05 4.9E-10 76.1 5.8 31 33-63 18-49 (243)
132 PRK14247 phosphate ABC transpo 97.8 2.3E-05 5E-10 76.4 5.9 45 19-63 3-50 (250)
133 PRK14250 phosphate ABC transpo 97.8 2.8E-05 6.1E-10 75.1 6.4 45 18-63 2-50 (241)
134 PRK14266 phosphate ABC transpo 97.8 2.7E-05 5.8E-10 75.9 6.2 47 18-65 2-52 (250)
135 PRK14242 phosphate transporter 97.8 2.7E-05 5.9E-10 76.0 6.3 46 19-64 6-54 (253)
136 PRK14237 phosphate transporter 97.8 3E-05 6.5E-10 76.1 6.5 47 17-63 18-67 (267)
137 KOG0971 Microtubule-associated 97.8 0.074 1.6E-06 57.5 36.9 8 41-48 61-68 (1243)
138 PRK13541 cytochrome c biogenes 97.8 3.2E-05 6.9E-10 71.9 6.2 45 19-63 1-47 (195)
139 TIGR00960 3a0501s02 Type II (G 97.8 3.2E-05 6.8E-10 73.5 6.3 44 19-63 1-50 (216)
140 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 2.9E-05 6.2E-10 74.8 6.1 44 20-63 2-48 (236)
141 PRK10895 lipopolysaccharide AB 97.8 2.4E-05 5.2E-10 75.7 5.5 44 19-63 3-50 (241)
142 PRK13537 nodulation ABC transp 97.8 3.3E-05 7.1E-10 77.1 6.4 46 18-63 6-54 (306)
143 PF00005 ABC_tran: ABC transpo 97.8 1.8E-05 3.9E-10 68.9 4.0 29 35-63 3-32 (137)
144 PRK14238 phosphate transporter 97.8 3.2E-05 7E-10 76.0 6.2 49 16-64 21-72 (271)
145 cd03248 ABCC_TAP TAP, the Tran 97.8 4.7E-05 1E-09 72.9 7.2 47 17-63 9-61 (226)
146 PRK13638 cbiO cobalt transport 97.8 3.4E-05 7.3E-10 76.0 6.2 45 19-63 1-48 (271)
147 TIGR01288 nodI ATP-binding ABC 97.8 3.1E-05 6.7E-10 77.5 6.0 45 19-63 4-51 (303)
148 cd00267 ABC_ATPase ABC (ATP-bi 97.8 3.1E-05 6.7E-10 69.1 5.4 34 33-66 15-49 (157)
149 PRK14243 phosphate transporter 97.8 3.2E-05 6.9E-10 75.8 5.9 46 19-64 10-58 (264)
150 TIGR03522 GldA_ABC_ATP gliding 97.8 3.2E-05 6.9E-10 77.2 6.0 45 19-63 2-49 (301)
151 PRK09544 znuC high-affinity zi 97.8 3.1E-05 6.7E-10 74.9 5.7 45 19-63 4-51 (251)
152 TIGR00972 3a0107s01c2 phosphat 97.8 3.6E-05 7.9E-10 74.7 6.2 45 19-63 1-48 (247)
153 PRK11831 putative ABC transpor 97.8 3.1E-05 6.7E-10 76.1 5.7 45 18-63 6-54 (269)
154 PRK14245 phosphate ABC transpo 97.8 3.2E-05 7E-10 75.3 5.8 46 19-64 3-51 (250)
155 PF00038 Filament: Intermediat 97.8 0.054 1.2E-06 54.7 38.0 8 427-434 267-274 (312)
156 cd03264 ABC_drug_resistance_li 97.8 2.6E-05 5.6E-10 73.7 4.9 31 33-63 16-46 (211)
157 PRK10584 putative ABC transpor 97.8 4.2E-05 9.1E-10 73.4 6.3 45 19-63 6-57 (228)
158 COG1117 PstB ABC-type phosphat 97.8 7.5E-05 1.6E-09 66.1 7.1 43 22-64 5-55 (253)
159 PRK09493 glnQ glutamine ABC tr 97.8 3.9E-05 8.4E-10 74.2 6.1 45 19-63 1-48 (240)
160 PRK14241 phosphate transporter 97.8 4E-05 8.6E-10 75.0 6.2 46 19-64 4-52 (258)
161 cd03266 ABC_NatA_sodium_export 97.8 4.4E-05 9.5E-10 72.7 6.4 31 33-63 21-52 (218)
162 PRK11701 phnK phosphonate C-P 97.8 3.2E-05 6.8E-10 75.7 5.5 30 34-63 23-53 (258)
163 PRK14262 phosphate ABC transpo 97.8 3.7E-05 7.9E-10 74.9 5.9 45 19-63 3-50 (250)
164 PRK14235 phosphate transporter 97.8 3.7E-05 8.1E-10 75.4 5.9 46 19-64 19-67 (267)
165 cd03262 ABC_HisP_GlnQ_permease 97.8 3.9E-05 8.4E-10 72.8 5.8 31 33-63 16-47 (213)
166 PRK14274 phosphate ABC transpo 97.8 4E-05 8.6E-10 75.0 6.1 45 19-64 12-60 (259)
167 PRK13648 cbiO cobalt transport 97.8 3.5E-05 7.5E-10 75.8 5.7 45 19-63 7-56 (269)
168 PF09730 BicD: Microtubule-ass 97.8 0.1 2.2E-06 57.1 47.9 79 286-364 39-117 (717)
169 PRK11264 putative amino-acid A 97.8 3.8E-05 8.2E-10 74.9 5.9 45 19-63 3-50 (250)
170 PRK14254 phosphate ABC transpo 97.8 5.7E-05 1.2E-09 74.7 7.2 46 18-63 38-86 (285)
171 cd03291 ABCC_CFTR1 The CFTR su 97.8 5.6E-05 1.2E-09 74.1 7.0 45 19-63 39-84 (282)
172 PRK10771 thiQ thiamine transpo 97.8 4.8E-05 1.1E-09 73.0 6.5 45 19-63 1-46 (232)
173 PRK10908 cell division protein 97.8 4.6E-05 1E-09 72.6 6.3 45 19-63 1-49 (222)
174 PRK13641 cbiO cobalt transport 97.8 4.3E-05 9.2E-10 75.8 6.2 31 33-63 23-54 (287)
175 PRK13644 cbiO cobalt transport 97.8 4.6E-05 1E-09 75.0 6.3 46 19-64 1-50 (274)
176 PRK11629 lolD lipoprotein tran 97.8 4.6E-05 9.9E-10 73.3 6.1 45 19-63 5-56 (233)
177 PRK13536 nodulation factor exp 97.8 4.4E-05 9.5E-10 77.1 6.2 30 34-63 58-88 (340)
178 PRK13547 hmuV hemin importer A 97.8 4.3E-05 9.2E-10 74.8 6.0 31 33-63 17-48 (272)
179 cd03265 ABC_DrrA DrrA is the A 97.8 3.4E-05 7.3E-10 73.5 5.1 31 33-63 16-47 (220)
180 KOG1029 Endocytic adaptor prot 97.7 0.088 1.9E-06 55.9 34.1 32 392-423 547-578 (1118)
181 PRK14269 phosphate ABC transpo 97.7 4.5E-05 9.7E-10 74.0 6.0 45 18-63 1-49 (246)
182 PRK09580 sufC cysteine desulfu 97.7 4.2E-05 9.1E-10 74.5 5.9 45 19-63 1-48 (248)
183 cd03269 ABC_putative_ATPase Th 97.7 4.6E-05 1E-09 72.0 6.0 31 33-63 16-47 (210)
184 PRK14253 phosphate ABC transpo 97.7 3.9E-05 8.6E-10 74.7 5.6 44 19-63 3-50 (249)
185 TIGR02211 LolD_lipo_ex lipopro 97.7 4.7E-05 1E-09 72.6 6.1 31 33-63 21-52 (221)
186 PRK14268 phosphate ABC transpo 97.7 5.3E-05 1.2E-09 74.0 6.5 47 16-63 9-59 (258)
187 PRK10247 putative ABC transpor 97.7 4.7E-05 1E-09 72.6 6.0 45 19-63 7-54 (225)
188 PRK11247 ssuB aliphatic sulfon 97.7 5E-05 1.1E-09 73.6 6.2 46 18-63 11-59 (257)
189 PRK14259 phosphate ABC transpo 97.7 5.2E-05 1.1E-09 74.4 6.4 47 16-63 10-60 (269)
190 COG1340 Uncharacterized archae 97.7 0.043 9.3E-07 52.1 34.5 24 337-360 165-188 (294)
191 COG0410 LivF ABC-type branched 97.7 5.6E-05 1.2E-09 68.2 5.9 29 35-63 21-50 (237)
192 PRK13646 cbiO cobalt transport 97.7 4.9E-05 1.1E-09 75.4 6.2 44 19-63 2-54 (286)
193 PRK10744 pstB phosphate transp 97.7 5.2E-05 1.1E-09 74.2 6.3 31 33-63 29-60 (260)
194 cd03257 ABC_NikE_OppD_transpor 97.7 4.6E-05 9.9E-10 73.2 5.8 31 33-63 21-52 (228)
195 PRK13649 cbiO cobalt transport 97.7 5.1E-05 1.1E-09 75.2 6.2 31 33-63 23-54 (280)
196 cd03258 ABC_MetN_methionine_tr 97.7 4.3E-05 9.4E-10 73.6 5.6 31 33-63 21-52 (233)
197 CHL00131 ycf16 sulfate ABC tra 97.7 4.4E-05 9.6E-10 74.5 5.7 45 19-63 7-54 (252)
198 PRK13548 hmuV hemin importer A 97.7 4.9E-05 1.1E-09 74.1 6.0 45 19-63 2-49 (258)
199 PRK14264 phosphate ABC transpo 97.7 6E-05 1.3E-09 75.4 6.7 45 19-63 45-92 (305)
200 cd03268 ABC_BcrA_bacitracin_re 97.7 5.3E-05 1.1E-09 71.5 6.0 31 33-63 16-47 (208)
201 PRK10851 sulfate/thiosulfate t 97.7 4.9E-05 1.1E-09 77.2 6.1 45 18-63 1-49 (353)
202 TIGR02323 CP_lyasePhnK phospho 97.7 4.5E-05 9.7E-10 74.5 5.7 45 19-63 3-50 (253)
203 PRK14239 phosphate transporter 97.7 4.9E-05 1.1E-09 74.2 6.0 45 19-63 5-52 (252)
204 cd03216 ABC_Carb_Monos_I This 97.7 5.9E-05 1.3E-09 67.5 6.0 31 33-63 16-47 (163)
205 COG4138 BtuD ABC-type cobalami 97.7 2.8E-05 6.1E-10 65.9 3.5 47 18-66 2-49 (248)
206 PRK11614 livF leucine/isoleuci 97.7 4.7E-05 1E-09 73.4 5.7 44 19-63 5-52 (237)
207 COG1136 SalX ABC-type antimicr 97.7 4.7E-05 1E-09 69.9 5.3 33 34-66 22-55 (226)
208 PRK14240 phosphate transporter 97.7 5.4E-05 1.2E-09 73.7 6.2 46 19-64 3-51 (250)
209 cd03229 ABC_Class3 This class 97.7 6E-05 1.3E-09 68.8 6.0 31 33-63 16-47 (178)
210 cd03224 ABC_TM1139_LivF_branch 97.7 5E-05 1.1E-09 72.6 5.7 31 33-63 16-47 (222)
211 TIGR01069 mutS2 MutS2 family p 97.7 0.0012 2.5E-08 74.2 17.1 30 36-65 314-345 (771)
212 PRK11300 livG leucine/isoleuci 97.7 5E-05 1.1E-09 74.3 5.7 44 19-63 5-52 (255)
213 TIGR01166 cbiO cobalt transpor 97.7 3.4E-05 7.4E-10 71.5 4.3 31 33-63 8-39 (190)
214 TIGR03411 urea_trans_UrtD urea 97.7 5.4E-05 1.2E-09 73.4 5.8 45 19-63 2-49 (242)
215 TIGR01189 ccmA heme ABC export 97.7 6E-05 1.3E-09 70.3 5.9 31 33-63 16-47 (198)
216 cd03259 ABC_Carb_Solutes_like 97.7 5.5E-05 1.2E-09 71.6 5.8 31 33-63 16-47 (213)
217 cd03288 ABCC_SUR2 The SUR doma 97.7 9.9E-05 2.1E-09 72.0 7.5 57 6-63 5-68 (257)
218 TIGR03265 PhnT2 putative 2-ami 97.7 6.1E-05 1.3E-09 76.5 6.2 45 19-63 4-51 (353)
219 PF06160 EzrA: Septation ring 97.7 0.13 2.8E-06 56.2 38.1 51 178-228 93-143 (560)
220 cd03261 ABC_Org_Solvent_Resist 97.7 4.7E-05 1E-09 73.3 5.2 31 33-63 16-47 (235)
221 cd03230 ABC_DR_subfamily_A Thi 97.7 7E-05 1.5E-09 68.0 6.0 31 33-63 16-47 (173)
222 PRK09536 btuD corrinoid ABC tr 97.7 5.7E-05 1.2E-09 77.6 6.0 45 18-63 2-50 (402)
223 PRK14248 phosphate ABC transpo 97.7 6.3E-05 1.4E-09 74.0 6.1 46 19-64 21-69 (268)
224 PRK14252 phosphate ABC transpo 97.7 8.9E-05 1.9E-09 72.8 7.1 48 16-63 13-63 (265)
225 PRK14267 phosphate ABC transpo 97.7 5.9E-05 1.3E-09 73.6 5.8 31 33-63 20-51 (253)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 2.6E-05 5.7E-10 74.1 3.3 30 34-63 39-69 (224)
227 PRK15177 Vi polysaccharide exp 97.7 3.7E-05 8.1E-10 72.3 4.2 30 34-63 4-34 (213)
228 cd03228 ABCC_MRP_Like The MRP 97.7 7.9E-05 1.7E-09 67.5 6.2 32 33-64 18-50 (171)
229 PRK13640 cbiO cobalt transport 97.7 6.8E-05 1.5E-09 74.2 6.3 44 19-63 5-54 (282)
230 PRK14251 phosphate ABC transpo 97.7 6.6E-05 1.4E-09 73.2 6.1 45 19-64 4-52 (251)
231 cd03246 ABCC_Protease_Secretio 97.7 8.1E-05 1.8E-09 67.6 6.2 31 33-63 18-49 (173)
232 cd03225 ABC_cobalt_CbiO_domain 97.7 5E-05 1.1E-09 71.8 5.0 31 33-63 17-48 (211)
233 PRK13545 tagH teichoic acids e 97.7 7.6E-05 1.6E-09 77.8 6.6 53 11-63 13-71 (549)
234 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 4E-05 8.7E-10 72.9 4.4 31 33-63 20-51 (218)
235 PRK10575 iron-hydroxamate tran 97.7 8.3E-05 1.8E-09 73.0 6.7 44 19-63 11-58 (265)
236 PRK15056 manganese/iron transp 97.7 6.6E-05 1.4E-09 73.9 6.0 45 19-63 6-54 (272)
237 cd03226 ABC_cobalt_CbiO_domain 97.7 4E-05 8.6E-10 72.1 4.2 31 33-63 16-47 (205)
238 cd03219 ABC_Mj1267_LivG_branch 97.7 5.6E-05 1.2E-09 73.0 5.4 31 33-63 16-47 (236)
239 PRK13633 cobalt transporter AT 97.7 6.6E-05 1.4E-09 74.2 6.0 44 19-63 4-57 (280)
240 PRK14275 phosphate ABC transpo 97.7 6.4E-05 1.4E-09 74.5 5.9 45 19-63 39-86 (286)
241 PRK13637 cbiO cobalt transport 97.7 7.1E-05 1.5E-09 74.2 6.2 31 33-63 23-54 (287)
242 PRK14270 phosphate ABC transpo 97.7 6.9E-05 1.5E-09 73.0 6.0 44 19-63 4-51 (251)
243 PRK03695 vitamin B12-transport 97.7 3.5E-05 7.6E-10 74.6 3.9 42 20-63 1-43 (248)
244 cd03260 ABC_PstB_phosphate_tra 97.7 7.3E-05 1.6E-09 71.6 6.1 34 33-66 16-50 (227)
245 PRK14255 phosphate ABC transpo 97.7 7.5E-05 1.6E-09 72.9 6.2 44 19-63 5-52 (252)
246 PRK10619 histidine/lysine/argi 97.7 7E-05 1.5E-09 73.2 6.0 45 19-63 5-52 (257)
247 PRK13543 cytochrome c biogenes 97.7 7.1E-05 1.5E-09 70.8 5.8 45 19-63 11-58 (214)
248 PRK13647 cbiO cobalt transport 97.7 8.1E-05 1.7E-09 73.3 6.4 45 19-63 4-52 (274)
249 cd03256 ABC_PhnC_transporter A 97.7 6.7E-05 1.5E-09 72.8 5.7 31 33-63 17-48 (241)
250 PRK10253 iron-enterobactin tra 97.7 6E-05 1.3E-09 74.0 5.4 45 19-63 7-54 (265)
251 PRK09984 phosphonate/organopho 97.6 7E-05 1.5E-09 73.4 5.8 44 19-63 4-51 (262)
252 TIGR02324 CP_lyasePhnL phospho 97.6 8.1E-05 1.8E-09 71.2 6.1 31 33-63 24-55 (224)
253 cd03295 ABC_OpuCA_Osmoprotecti 97.6 7.9E-05 1.7E-09 72.1 6.0 31 33-63 17-48 (242)
254 PRK14260 phosphate ABC transpo 97.6 8.3E-05 1.8E-09 72.7 6.2 47 19-65 7-56 (259)
255 PRK13639 cbiO cobalt transport 97.6 8.8E-05 1.9E-09 73.1 6.4 45 19-63 1-49 (275)
256 PRK11000 maltose/maltodextrin 97.6 7.7E-05 1.7E-09 76.5 6.2 44 20-63 4-50 (369)
257 PRK11153 metN DL-methionine tr 97.6 7.9E-05 1.7E-09 75.7 6.1 44 19-63 1-52 (343)
258 TIGR01978 sufC FeS assembly AT 97.6 6.6E-05 1.4E-09 72.9 5.4 31 33-63 16-47 (243)
259 PRK13632 cbiO cobalt transport 97.6 8.1E-05 1.8E-09 73.3 6.0 45 19-63 7-56 (271)
260 cd03283 ABC_MutS-like MutS-lik 97.6 4.6E-05 9.9E-10 70.4 4.0 28 36-63 18-46 (199)
261 PRK14236 phosphate transporter 97.6 9.6E-05 2.1E-09 72.8 6.5 45 19-63 25-72 (272)
262 cd03263 ABC_subfamily_A The AB 97.6 5E-05 1.1E-09 72.4 4.4 31 33-63 18-49 (220)
263 PRK13651 cobalt transporter AT 97.6 9E-05 1.9E-09 73.8 6.3 31 33-63 23-54 (305)
264 cd03223 ABCD_peroxisomal_ALDP 97.6 5.1E-05 1.1E-09 68.1 4.2 31 33-63 17-48 (166)
265 cd03293 ABC_NrtD_SsuB_transpor 97.6 4.7E-05 1E-09 72.5 4.2 31 33-63 20-51 (220)
266 TIGR03005 ectoine_ehuA ectoine 97.6 8.2E-05 1.8E-09 72.5 5.9 31 33-63 16-47 (252)
267 cd03301 ABC_MalK_N The N-termi 97.6 8.8E-05 1.9E-09 70.3 6.0 31 33-63 16-47 (213)
268 PRK13635 cbiO cobalt transport 97.6 9.1E-05 2E-09 73.1 6.2 45 19-63 5-54 (279)
269 cd00820 PEPCK_HprK Phosphoenol 97.6 6.4E-05 1.4E-09 59.9 4.1 31 33-63 5-36 (107)
270 PRK13650 cbiO cobalt transport 97.6 9.1E-05 2E-09 73.1 6.1 45 19-63 4-54 (279)
271 PRK13652 cbiO cobalt transport 97.6 0.00011 2.3E-09 72.7 6.4 45 19-63 3-51 (277)
272 PRK09452 potA putrescine/sperm 97.6 9.9E-05 2.1E-09 75.4 6.4 45 19-63 14-61 (375)
273 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 9.8E-05 2.1E-09 71.4 6.1 31 33-63 19-50 (238)
274 PRK13634 cbiO cobalt transport 97.6 0.00011 2.3E-09 73.1 6.3 31 33-63 23-54 (290)
275 TIGR00968 3a0106s01 sulfate AB 97.6 0.0001 2.2E-09 71.0 6.0 31 33-63 16-47 (237)
276 cd03232 ABC_PDR_domain2 The pl 97.6 0.0001 2.2E-09 68.2 5.9 31 33-63 23-54 (192)
277 cd03214 ABC_Iron-Siderophores_ 97.6 6.4E-05 1.4E-09 68.8 4.4 31 33-63 15-46 (180)
278 PRK10419 nikE nickel transport 97.6 9.3E-05 2E-09 72.6 5.8 31 33-63 28-59 (268)
279 PRK14249 phosphate ABC transpo 97.6 0.00011 2.3E-09 71.7 6.2 45 19-63 4-51 (251)
280 COG1131 CcmA ABC-type multidru 97.6 5.8E-05 1.3E-09 74.5 4.3 30 34-63 22-52 (293)
281 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00011 2.5E-09 69.4 6.2 29 35-63 16-45 (211)
282 cd03235 ABC_Metallic_Cations A 97.6 7.1E-05 1.5E-09 70.9 4.7 31 33-63 15-46 (213)
283 PRK11432 fbpC ferric transport 97.6 0.00011 2.4E-09 74.5 6.3 45 19-63 6-53 (351)
284 PRK13643 cbiO cobalt transport 97.6 0.00011 2.4E-09 72.8 6.2 45 19-63 1-53 (288)
285 TIGR02769 nickel_nikE nickel i 97.6 0.0001 2.2E-09 72.3 5.9 31 33-63 27-58 (265)
286 cd03292 ABC_FtsE_transporter F 97.6 6.5E-05 1.4E-09 71.3 4.4 31 33-63 17-48 (214)
287 TIGR03410 urea_trans_UrtE urea 97.6 0.00011 2.3E-09 70.7 5.8 31 33-63 16-47 (230)
288 TIGR02770 nickel_nikD nickel i 97.6 6.4E-05 1.4E-09 72.0 4.2 30 34-63 3-33 (230)
289 COG4372 Uncharacterized protei 97.6 0.086 1.9E-06 51.0 33.3 40 189-228 77-116 (499)
290 COG3839 MalK ABC-type sugar tr 97.6 0.00013 2.8E-09 71.7 6.2 30 34-63 20-50 (338)
291 PRK09039 hypothetical protein; 97.6 0.017 3.7E-07 58.2 21.3 16 637-652 51-66 (343)
292 cd03218 ABC_YhbG The ABC trans 97.6 8.2E-05 1.8E-09 71.6 4.9 31 33-63 16-47 (232)
293 TIGR03608 L_ocin_972_ABC putat 97.6 9.3E-05 2E-09 69.7 5.1 31 33-63 14-45 (206)
294 cd03231 ABC_CcmA_heme_exporter 97.6 0.00012 2.7E-09 68.3 5.8 31 33-63 16-47 (201)
295 cd03247 ABCC_cytochrome_bd The 97.6 8E-05 1.7E-09 68.0 4.4 31 33-63 18-49 (178)
296 KOG0946 ER-Golgi vesicle-tethe 97.6 0.18 3.9E-06 54.2 29.7 47 204-250 668-715 (970)
297 cd03243 ABC_MutS_homologs The 97.6 7.7E-05 1.7E-09 69.7 4.3 33 31-63 17-50 (202)
298 PRK11650 ugpC glycerol-3-phosp 97.6 0.00013 2.8E-09 74.2 6.3 45 19-63 3-51 (356)
299 TIGR03740 galliderm_ABC gallid 97.5 0.00013 2.8E-09 69.6 6.0 31 33-63 16-47 (223)
300 PRK14244 phosphate ABC transpo 97.5 0.00013 2.8E-09 71.1 5.9 44 21-64 7-53 (251)
301 PRK14272 phosphate ABC transpo 97.5 0.00012 2.6E-09 71.5 5.6 31 33-63 20-51 (252)
302 PF14662 CCDC155: Coiled-coil 97.5 0.051 1.1E-06 47.6 28.0 56 383-438 133-188 (193)
303 PRK13642 cbiO cobalt transport 97.5 0.00014 3.1E-09 71.7 6.3 45 19-63 4-54 (277)
304 cd03280 ABC_MutS2 MutS2 homolo 97.5 8.1E-05 1.8E-09 69.4 4.2 32 32-63 16-49 (200)
305 TIGR01184 ntrCD nitrate transp 97.5 8.4E-05 1.8E-09 71.1 4.4 30 34-63 2-32 (230)
306 PRK13636 cbiO cobalt transport 97.5 0.00014 3E-09 72.0 6.1 45 19-63 5-53 (283)
307 cd03300 ABC_PotA_N PotA is an 97.5 0.00014 3E-09 69.9 5.9 32 32-63 15-47 (232)
308 COG3638 ABC-type phosphate/pho 97.5 0.00016 3.5E-09 65.3 5.8 30 35-64 22-52 (258)
309 cd03245 ABCC_bacteriocin_expor 97.5 0.00017 3.6E-09 68.8 6.3 31 33-63 20-51 (220)
310 PRK14256 phosphate ABC transpo 97.5 0.00014 3E-09 70.9 5.8 32 33-64 20-52 (252)
311 PRK15112 antimicrobial peptide 97.5 0.00014 3E-09 71.4 5.8 31 33-63 29-60 (267)
312 PRK14258 phosphate ABC transpo 97.5 0.00014 3E-09 71.2 5.8 31 33-63 23-54 (261)
313 COG1116 TauB ABC-type nitrate/ 97.5 0.00015 3.3E-09 66.7 5.5 30 34-63 20-50 (248)
314 PRK13645 cbiO cobalt transport 97.5 0.00016 3.4E-09 72.0 6.2 31 33-63 27-58 (289)
315 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.00019 4.2E-09 67.5 6.5 44 20-63 7-55 (207)
316 cd03213 ABCG_EPDR ABCG transpo 97.5 0.00017 3.6E-09 66.9 5.9 31 33-63 25-56 (194)
317 cd03217 ABC_FeS_Assembly ABC-t 97.5 0.00011 2.3E-09 68.6 4.6 31 33-63 16-47 (200)
318 PRK00409 recombination and DNA 97.5 0.027 5.8E-07 63.8 24.1 29 35-63 318-348 (782)
319 PF15619 Lebercilin: Ciliary p 97.5 0.071 1.5E-06 48.3 26.3 86 318-403 63-148 (194)
320 PRK10418 nikD nickel transport 97.5 0.00015 3.3E-09 70.7 5.8 43 20-63 5-50 (254)
321 cd03250 ABCC_MRP_domain1 Domai 97.5 9.7E-05 2.1E-09 69.3 4.3 31 33-63 21-52 (204)
322 cd03290 ABCC_SUR1_N The SUR do 97.5 9.8E-05 2.1E-09 70.2 4.4 32 33-64 17-49 (218)
323 cd03233 ABC_PDR_domain1 The pl 97.5 9.8E-05 2.1E-09 68.9 4.3 31 33-63 23-54 (202)
324 cd03252 ABCC_Hemolysin The ABC 97.5 0.00017 3.7E-09 69.7 6.0 31 33-63 18-49 (237)
325 cd03254 ABCC_Glucan_exporter_l 97.5 0.0001 2.2E-09 70.8 4.4 31 33-63 19-50 (229)
326 TIGR01277 thiQ thiamine ABC tr 97.5 0.00018 3.9E-09 68.1 5.9 30 34-63 15-45 (213)
327 cd03253 ABCC_ATM1_transporter 97.5 0.00019 4.1E-09 69.3 6.2 31 33-63 17-48 (236)
328 TIGR02314 ABC_MetN D-methionin 97.5 0.00019 4E-09 72.4 6.3 31 33-63 21-52 (343)
329 TIGR03873 F420-0_ABC_ATP propo 97.5 0.00018 3.8E-09 70.3 6.0 31 33-63 17-48 (256)
330 PRK15093 antimicrobial peptide 97.5 0.00019 4.1E-09 72.6 6.3 46 19-64 3-55 (330)
331 cd03294 ABC_Pro_Gly_Bertaine T 97.5 0.0001 2.3E-09 72.3 4.4 31 33-63 40-71 (269)
332 cd03267 ABC_NatA_like Similar 97.5 0.0001 2.2E-09 70.8 4.3 30 34-63 38-68 (236)
333 PRK14263 phosphate ABC transpo 97.5 0.00016 3.5E-09 70.6 5.6 32 32-63 23-55 (261)
334 PF06160 EzrA: Septation ring 97.5 0.25 5.4E-06 54.0 36.0 14 351-364 351-364 (560)
335 cd03299 ABC_ModC_like Archeal 97.5 0.00019 4.2E-09 69.0 6.1 31 33-63 15-46 (235)
336 PRK15439 autoinducer 2 ABC tra 97.5 0.00019 4.2E-09 77.8 6.7 45 19-63 11-58 (510)
337 TIGR02982 heterocyst_DevA ABC 97.5 0.00021 4.5E-09 68.0 6.2 31 33-63 21-52 (220)
338 cd03222 ABC_RNaseL_inhibitor T 97.5 9E-05 2E-09 66.6 3.4 26 38-63 20-46 (177)
339 TIGR01188 drrA daunorubicin re 97.5 0.00012 2.5E-09 73.3 4.6 31 33-63 9-40 (302)
340 PRK11607 potG putrescine trans 97.5 0.0003 6.5E-09 72.1 7.6 30 34-63 36-66 (377)
341 PLN03073 ABC transporter F fam 97.5 0.00018 4E-09 80.1 6.5 48 16-63 174-224 (718)
342 PRK11147 ABC transporter ATPas 97.5 0.00015 3.3E-09 80.8 5.9 45 19-63 3-50 (635)
343 PF05701 WEMBL: Weak chloropla 97.5 0.25 5.3E-06 53.5 57.8 67 639-705 288-354 (522)
344 PRK13546 teichoic acids export 97.5 0.00012 2.5E-09 71.3 4.3 30 34-63 41-71 (264)
345 cd03251 ABCC_MsbA MsbA is an e 97.5 0.00012 2.6E-09 70.5 4.4 31 33-63 18-49 (234)
346 COG3840 ThiQ ABC-type thiamine 97.4 0.00016 3.6E-09 62.1 4.5 32 32-63 10-46 (231)
347 TIGR03719 ABC_ABC_ChvD ATP-bin 97.4 0.00015 3.3E-09 79.5 5.5 44 19-63 4-52 (552)
348 COG1122 CbiO ABC-type cobalt t 97.4 0.00024 5.2E-09 66.8 6.1 33 34-66 21-54 (235)
349 cd03244 ABCC_MRP_domain2 Domai 97.4 0.00013 2.8E-09 69.6 4.4 31 33-63 20-51 (221)
350 KOG1003 Actin filament-coating 97.4 0.071 1.5E-06 46.5 27.6 30 408-437 165-194 (205)
351 PRK13631 cbiO cobalt transport 97.4 0.00033 7.2E-09 70.3 7.2 46 18-63 20-73 (320)
352 PRK11819 putative ABC transpor 97.4 0.00017 3.6E-09 79.2 5.5 31 33-63 23-54 (556)
353 COG3883 Uncharacterized protei 97.4 0.043 9.2E-07 51.4 20.0 55 637-691 43-97 (265)
354 PF13304 AAA_21: AAA domain; P 97.4 3.3E-05 7.2E-10 78.0 0.0 24 44-67 1-24 (303)
355 COG1118 CysA ABC-type sulfate/ 97.4 0.00014 2.9E-09 68.5 3.9 31 34-64 19-50 (345)
356 PRK10938 putative molybdenum t 97.4 0.00021 4.6E-09 77.4 6.0 30 34-63 20-50 (490)
357 PF05667 DUF812: Protein of un 97.4 0.29 6.3E-06 53.0 36.3 25 260-284 394-418 (594)
358 KOG0980 Actin-binding protein 97.4 0.31 6.6E-06 53.1 30.8 22 376-397 497-518 (980)
359 PRK14246 phosphate ABC transpo 97.4 0.00024 5.3E-09 69.1 5.6 31 33-63 26-57 (257)
360 cd03234 ABCG_White The White s 97.4 0.00016 3.4E-09 69.2 4.2 31 33-63 23-54 (226)
361 PRK09700 D-allose transporter 97.4 0.00019 4.2E-09 78.1 5.2 46 19-64 265-311 (510)
362 COG4555 NatA ABC-type Na+ tran 97.4 0.00019 4.1E-09 63.0 4.0 31 37-67 20-53 (245)
363 PRK10762 D-ribose transporter 97.4 0.00023 5E-09 77.2 5.7 46 19-64 4-52 (501)
364 PRK15064 ABC transporter ATP-b 97.4 0.00025 5.5E-09 77.5 6.1 43 20-63 2-48 (530)
365 PRK14257 phosphate ABC transpo 97.4 0.00033 7.2E-09 70.5 6.4 48 16-63 77-129 (329)
366 PF10473 CENP-F_leu_zip: Leuci 97.4 0.068 1.5E-06 44.9 19.0 35 718-752 70-104 (140)
367 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00035 7.7E-09 68.2 6.3 34 33-66 20-54 (275)
368 PRK10938 putative molybdenum t 97.3 0.00022 4.7E-09 77.3 5.2 45 19-63 260-307 (490)
369 PRK11022 dppD dipeptide transp 97.3 0.00029 6.2E-09 71.0 5.6 46 19-64 3-55 (326)
370 PRK13549 xylose transporter AT 97.3 0.00027 5.8E-09 76.8 5.8 32 33-64 21-53 (506)
371 COG4942 Membrane-bound metallo 97.3 0.23 4.9E-06 50.2 30.0 30 200-229 38-67 (420)
372 PRK09700 D-allose transporter 97.3 0.0003 6.6E-09 76.5 5.7 31 33-63 21-52 (510)
373 PRK11281 hypothetical protein; 97.3 0.27 5.9E-06 57.4 29.0 16 350-365 233-248 (1113)
374 PRK15064 ABC transporter ATP-b 97.3 0.00036 7.8E-09 76.3 5.8 45 19-63 319-366 (530)
375 PRK10636 putative ABC transpor 97.3 0.00039 8.5E-09 77.3 6.1 31 33-63 17-48 (638)
376 PRK11819 putative ABC transpor 97.3 0.00037 8.1E-09 76.5 5.9 45 18-63 323-371 (556)
377 COG1101 PhnK ABC-type uncharac 97.3 0.00031 6.8E-09 62.3 4.1 30 34-63 23-53 (263)
378 PRK09473 oppD oligopeptide tra 97.3 0.00046 1E-08 69.6 6.0 45 19-63 12-63 (330)
379 TIGR02633 xylG D-xylose ABC tr 97.2 0.00042 9E-09 75.3 6.0 31 33-63 17-48 (500)
380 COG2884 FtsE Predicted ATPase 97.2 0.00034 7.4E-09 60.8 4.1 32 34-65 19-51 (223)
381 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00032 6.9E-09 67.5 4.4 24 40-63 22-46 (246)
382 PRK11147 ABC transporter ATPas 97.2 0.00051 1.1E-08 76.6 6.7 44 19-63 319-366 (635)
383 TIGR03258 PhnT 2-aminoethylpho 97.2 0.00053 1.1E-08 69.9 6.1 30 34-63 22-52 (362)
384 cd03297 ABC_ModC_molybdenum_tr 97.2 0.00034 7.4E-09 66.2 4.5 29 35-63 16-44 (214)
385 TIGR03719 ABC_ABC_ChvD ATP-bin 97.2 0.0004 8.7E-09 76.2 5.7 45 19-63 322-369 (552)
386 COG4619 ABC-type uncharacteriz 97.2 0.00036 7.8E-09 59.1 3.9 30 37-66 23-53 (223)
387 PRK10636 putative ABC transpor 97.2 0.00056 1.2E-08 76.1 6.8 44 19-63 312-359 (638)
388 TIGR03415 ABC_choXWV_ATP choli 97.2 0.0003 6.4E-09 71.8 4.2 31 33-63 40-71 (382)
389 PRK11144 modC molybdate transp 97.2 0.00056 1.2E-08 69.8 6.2 29 35-63 16-45 (352)
390 KOG0980 Actin-binding protein 97.2 0.5 1.1E-05 51.6 32.6 20 774-793 955-974 (980)
391 PRK11288 araG L-arabinose tran 97.2 0.00046 1E-08 74.9 5.8 45 19-63 4-51 (501)
392 PRK15439 autoinducer 2 ABC tra 97.2 0.0004 8.7E-09 75.4 5.1 31 33-63 279-310 (510)
393 PLN03073 ABC transporter F fam 97.2 0.0007 1.5E-08 75.7 7.0 45 18-63 507-556 (718)
394 cd03270 ABC_UvrA_I The excisio 97.2 0.00038 8.2E-09 66.2 4.1 29 34-62 12-42 (226)
395 PF05667 DUF812: Protein of un 97.2 0.53 1.2E-05 51.1 38.7 6 53-58 125-130 (594)
396 PRK15079 oligopeptide ABC tran 97.1 0.00063 1.4E-08 68.6 5.7 31 33-63 37-68 (331)
397 TIGR03269 met_CoM_red_A2 methy 97.1 0.00054 1.2E-08 74.8 5.7 45 19-63 279-331 (520)
398 PRK10070 glycine betaine trans 97.1 0.00038 8.2E-09 71.6 4.1 30 34-63 45-75 (400)
399 PRK15134 microcin C ABC transp 97.1 0.00056 1.2E-08 74.8 5.7 44 19-63 5-56 (529)
400 PRK11281 hypothetical protein; 97.1 0.8 1.7E-05 53.7 30.7 20 343-362 233-252 (1113)
401 cd03271 ABC_UvrA_II The excisi 97.1 0.00047 1E-08 66.2 4.4 30 34-63 12-42 (261)
402 PRK11308 dppF dipeptide transp 97.1 0.00087 1.9E-08 67.5 6.5 31 33-63 31-62 (327)
403 TIGR02142 modC_ABC molybdenum 97.1 0.00044 9.6E-09 70.8 4.4 29 35-63 15-44 (354)
404 TIGR03771 anch_rpt_ABC anchore 97.1 0.00032 7E-09 66.7 3.2 25 39-63 2-27 (223)
405 COG3842 PotA ABC-type spermidi 97.1 0.00051 1.1E-08 68.0 4.4 30 34-63 22-52 (352)
406 PRK13549 xylose transporter AT 97.1 0.00045 9.7E-09 75.1 4.4 44 19-63 259-309 (506)
407 PF08317 Spc7: Spc7 kinetochor 97.1 0.39 8.5E-06 48.4 30.2 23 228-250 122-144 (325)
408 PRK10762 D-ribose transporter 97.1 0.00055 1.2E-08 74.3 5.0 31 33-63 268-299 (501)
409 KOG0612 Rho-associated, coiled 97.1 0.82 1.8E-05 52.1 32.1 7 65-71 274-280 (1317)
410 TIGR01186 proV glycine betaine 97.1 0.00048 1E-08 69.9 4.2 31 33-63 9-40 (363)
411 PRK10982 galactose/methyl gala 97.1 0.00046 9.9E-09 74.8 4.2 45 19-63 250-295 (491)
412 TIGR02633 xylG D-xylose ABC tr 97.1 0.00046 1E-08 75.0 4.3 31 33-63 276-307 (500)
413 COG1125 OpuBA ABC-type proline 97.1 0.00078 1.7E-08 61.6 4.9 33 33-65 17-50 (309)
414 TIGR03269 met_CoM_red_A2 methy 97.1 0.00062 1.3E-08 74.4 5.2 33 33-65 16-49 (520)
415 PF15070 GOLGA2L5: Putative go 97.1 0.69 1.5E-05 50.5 35.9 9 238-246 54-62 (617)
416 COG4598 HisP ABC-type histidin 97.1 0.00068 1.5E-08 58.1 4.0 23 43-65 33-55 (256)
417 PRK10261 glutathione transport 97.0 0.00082 1.8E-08 74.7 5.6 46 19-65 12-65 (623)
418 PF15619 Lebercilin: Ciliary p 97.0 0.25 5.5E-06 44.8 24.6 11 417-427 173-183 (194)
419 KOG0963 Transcription factor/C 97.0 0.64 1.4E-05 48.9 33.6 38 404-442 320-357 (629)
420 PRK15134 microcin C ABC transp 97.0 0.00078 1.7E-08 73.7 4.9 31 33-63 302-333 (529)
421 COG1119 ModF ABC-type molybden 97.0 0.0014 3.1E-08 59.9 5.4 25 39-63 53-78 (257)
422 PRK10929 putative mechanosensi 96.9 1.3 2.8E-05 51.9 32.2 25 414-438 285-309 (1109)
423 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.00067 1.4E-08 65.6 3.4 24 40-63 23-47 (255)
424 PRK10982 galactose/methyl gala 96.9 0.00095 2.1E-08 72.3 5.0 31 33-63 14-45 (491)
425 COG1134 TagH ABC-type polysacc 96.9 0.00086 1.9E-08 61.4 3.7 30 34-63 44-74 (249)
426 COG1124 DppF ABC-type dipeptid 96.9 0.0016 3.6E-08 59.5 5.5 30 34-63 24-54 (252)
427 KOG0064 Peroxisomal long-chain 96.9 0.00083 1.8E-08 68.0 3.8 43 21-63 478-529 (728)
428 COG1129 MglA ABC-type sugar tr 96.9 0.00093 2E-08 69.0 4.3 30 34-63 25-55 (500)
429 KOG0976 Rho/Rac1-interacting s 96.9 0.86 1.9E-05 49.0 48.0 64 638-701 322-385 (1265)
430 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.00092 2E-08 62.6 3.9 32 32-63 16-50 (213)
431 COG4136 ABC-type uncharacteriz 96.9 0.0026 5.7E-08 52.8 5.8 39 34-72 19-58 (213)
432 PF15070 GOLGA2L5: Putative go 96.9 0.99 2.1E-05 49.3 35.5 38 193-230 29-66 (617)
433 COG3845 ABC-type uncharacteriz 96.9 0.0011 2.3E-08 67.1 4.3 33 34-67 21-54 (501)
434 PRK11288 araG L-arabinose tran 96.9 0.00086 1.9E-08 72.8 4.0 31 33-63 269-300 (501)
435 COG4152 ABC-type uncharacteriz 96.9 0.00086 1.9E-08 60.9 3.2 27 37-63 22-49 (300)
436 COG4586 ABC-type uncharacteriz 96.8 0.00091 2E-08 61.9 3.4 29 35-63 42-71 (325)
437 COG0488 Uup ATPase components 96.8 0.0014 3.1E-08 69.6 5.3 31 33-63 19-50 (530)
438 PRK10261 glutathione transport 96.8 0.0017 3.6E-08 72.3 6.2 31 33-63 340-371 (623)
439 cd01131 PilT Pilus retraction 96.8 0.001 2.2E-08 61.7 3.7 25 42-66 1-25 (198)
440 TIGR03185 DNA_S_dndD DNA sulfu 96.8 1.3 2.8E-05 49.9 32.3 43 206-248 208-251 (650)
441 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0011 2.3E-08 62.3 3.6 32 32-63 18-51 (216)
442 COG4107 PhnK ABC-type phosphon 96.8 0.0014 3E-08 55.9 3.7 33 34-66 23-56 (258)
443 PRK10078 ribose 1,5-bisphospho 96.8 0.00092 2E-08 61.5 3.0 24 44-67 4-27 (186)
444 PRK10535 macrolide transporter 96.8 0.002 4.3E-08 72.0 6.1 45 19-63 4-55 (648)
445 cd01130 VirB11-like_ATPase Typ 96.8 0.0011 2.4E-08 60.9 3.5 25 42-66 25-49 (186)
446 PRK13409 putative ATPase RIL; 96.8 0.0016 3.4E-08 71.4 5.1 44 19-63 340-386 (590)
447 TIGR02322 phosphon_PhnN phosph 96.7 0.0014 2.9E-08 60.2 3.8 25 44-68 3-27 (179)
448 PF09818 ABC_ATPase: Predicted 96.7 0.0047 1E-07 62.1 7.6 33 40-72 242-274 (448)
449 COG1127 Ttg2A ABC-type transpo 96.7 0.0015 3.3E-08 59.4 3.8 29 36-64 27-56 (263)
450 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.002 4.3E-08 59.7 4.6 30 34-63 20-50 (204)
451 KOG0999 Microtubule-associated 96.7 0.89 1.9E-05 46.7 33.3 241 188-433 10-254 (772)
452 COG4942 Membrane-bound metallo 96.7 0.87 1.9E-05 46.1 32.7 41 189-229 41-81 (420)
453 COG4167 SapF ABC-type antimicr 96.7 0.0019 4.1E-08 55.6 3.7 30 34-63 30-60 (267)
454 PLN03211 ABC transporter G-25; 96.7 0.0014 3.1E-08 72.7 3.9 30 34-63 85-115 (659)
455 KOG4643 Uncharacterized coiled 96.7 1.6 3.4E-05 48.7 51.5 41 191-231 182-222 (1195)
456 KOG0946 ER-Golgi vesicle-tethe 96.6 1.4 3.1E-05 47.8 27.7 26 413-438 853-878 (970)
457 TIGR00954 3a01203 Peroxysomal 96.6 0.003 6.4E-08 70.7 5.9 44 19-63 451-499 (659)
458 TIGR00554 panK_bact pantothena 96.6 0.0018 3.9E-08 63.0 3.6 26 42-67 62-87 (290)
459 COG2805 PilT Tfp pilus assembl 96.6 0.0017 3.6E-08 61.1 3.1 25 42-66 125-149 (353)
460 cd02025 PanK Pantothenate kina 96.6 0.0017 3.6E-08 61.2 3.1 24 44-67 1-24 (220)
461 PF05701 WEMBL: Weak chloropla 96.6 1.5 3.4E-05 47.5 52.8 10 142-151 6-15 (522)
462 COG4615 PvdE ABC-type sideroph 96.6 0.0029 6.3E-08 61.9 4.6 44 19-62 317-369 (546)
463 COG4525 TauB ABC-type taurine 96.6 0.0026 5.7E-08 55.6 3.9 30 34-63 22-52 (259)
464 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.0019 4.1E-08 65.4 3.6 24 43-66 135-158 (358)
465 COG4148 ModC ABC-type molybdat 96.5 0.0021 4.6E-08 59.7 3.5 22 42-63 24-45 (352)
466 PF04849 HAP1_N: HAP1 N-termin 96.5 0.83 1.8E-05 44.1 27.2 226 188-430 64-305 (306)
467 COG4185 Uncharacterized protei 96.5 0.0007 1.5E-08 56.8 0.3 26 42-67 2-27 (187)
468 KOG0062 ATPase component of AB 96.5 0.0029 6.2E-08 64.3 4.3 54 11-64 67-128 (582)
469 PF05557 MAD: Mitotic checkpoi 96.5 0.002 4.3E-08 72.9 3.7 26 761-786 508-533 (722)
470 COG4988 CydD ABC-type transpor 96.5 0.0025 5.4E-08 66.3 3.9 30 34-63 338-368 (559)
471 PF03193 DUF258: Protein of un 96.5 0.0025 5.3E-08 55.5 3.3 23 41-63 34-56 (161)
472 smart00534 MUTSac ATPase domai 96.5 0.0021 4.7E-08 58.9 3.1 21 44-64 1-21 (185)
473 KOG0927 Predicted transporter 96.4 0.0041 8.8E-08 63.6 5.0 49 20-68 76-127 (614)
474 TIGR00235 udk uridine kinase. 96.4 0.0026 5.6E-08 59.7 3.5 24 44-67 8-31 (207)
475 COG4778 PhnL ABC-type phosphon 96.4 0.004 8.7E-08 53.1 4.1 21 43-63 38-58 (235)
476 PRK09825 idnK D-gluconate kina 96.4 0.003 6.6E-08 57.1 3.7 26 43-68 4-29 (176)
477 smart00382 AAA ATPases associa 96.4 0.003 6.4E-08 55.6 3.6 28 42-69 2-29 (148)
478 PRK00349 uvrA excinuclease ABC 96.4 0.0028 6E-08 72.4 4.1 43 19-62 1-47 (943)
479 PF09730 BicD: Microtubule-ass 96.4 2.2 4.7E-05 47.2 64.6 43 752-794 671-713 (717)
480 PRK11176 lipid transporter ATP 96.4 0.003 6.5E-08 70.4 4.3 31 34-64 360-391 (582)
481 COG4161 ArtP ABC-type arginine 96.4 0.0046 9.9E-08 52.0 4.2 42 24-65 2-51 (242)
482 PRK10789 putative multidrug tr 96.4 0.0031 6.7E-08 69.7 4.2 30 34-63 332-362 (569)
483 COG1135 AbcC ABC-type metal io 96.4 0.0065 1.4E-07 57.8 5.6 30 34-63 23-53 (339)
484 COG4477 EzrA Negative regulato 96.4 1.5 3.4E-05 45.2 35.3 39 177-215 95-133 (570)
485 PF05557 MAD: Mitotic checkpoi 96.4 0.0031 6.8E-08 71.4 4.3 18 783-800 565-582 (722)
486 COG0194 Gmk Guanylate kinase [ 96.3 0.003 6.4E-08 55.4 3.1 20 44-63 6-25 (191)
487 TIGR03238 dnd_assoc_3 dnd syst 96.3 0.0028 6.1E-08 64.9 3.2 27 34-60 23-50 (504)
488 TIGR00955 3a01204 The Eye Pigm 96.3 0.0032 6.9E-08 70.0 4.0 31 33-63 41-72 (617)
489 KOG0057 Mitochondrial Fe/S clu 96.3 0.0045 9.8E-08 63.5 4.6 34 33-66 368-402 (591)
490 cd02023 UMPK Uridine monophosp 96.3 0.0033 7.1E-08 58.7 3.4 25 44-68 1-25 (198)
491 cd03285 ABC_MSH2_euk MutS2 hom 96.3 0.0043 9.2E-08 58.5 4.1 29 34-62 21-50 (222)
492 PF12325 TMF_TATA_bd: TATA ele 96.3 0.45 9.8E-06 39.0 15.0 102 655-765 18-119 (120)
493 TIGR01842 type_I_sec_PrtD type 96.3 0.0037 8E-08 68.8 4.2 31 33-63 334-365 (544)
494 TIGR03263 guanyl_kin guanylate 96.3 0.0032 6.8E-08 57.8 3.1 20 44-63 3-22 (180)
495 COG4181 Predicted ABC-type tra 96.3 0.0044 9.6E-08 53.0 3.5 29 34-62 27-56 (228)
496 COG1137 YhbG ABC-type (unclass 96.3 0.0018 3.9E-08 57.0 1.3 26 34-59 21-47 (243)
497 TIGR02868 CydC thiol reductant 96.3 0.0038 8.2E-08 68.6 4.2 31 33-63 351-382 (529)
498 KOG0978 E3 ubiquitin ligase in 96.3 2.4 5.1E-05 46.3 36.8 260 182-442 359-621 (698)
499 COG0488 Uup ATPase components 96.3 0.0044 9.5E-08 66.0 4.4 36 33-68 338-374 (530)
500 KOG2355 Predicted ABC-type tra 96.2 0.0047 1E-07 54.5 3.8 68 32-99 29-100 (291)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-63 Score=521.73 Aligned_cols=764 Identities=36% Similarity=0.569 Sum_probs=634.0
Q ss_pred CCCCeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEE
Q 003532 16 RSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVE 95 (812)
Q Consensus 16 ~~~~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~ 95 (812)
+.-.++|.+|++.||+.+....|+|+|.+|.|+|+||||||.||-||..||||+++.+.||.++.++|+.|+.+|.|.++
T Consensus 36 ~~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsIt 115 (1074)
T KOG0250|consen 36 RAESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISIT 115 (1074)
T ss_pred hhhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEE
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEe-cCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcCCC
Q 003532 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLK-DHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (812)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 174 (812)
++|.|.++|.+.+||+.++|.|+|....+.|++. +..|++|+....+++.++..|++++.||++|+.|+..+.||....
T Consensus 116 L~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~ 195 (1074)
T KOG0250|consen 116 LSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSN 195 (1074)
T ss_pred EecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCC
Confidence 9999999999999999999999999555555555 789999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003532 175 DKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSW 254 (812)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (812)
|...|++|..++.++++...+..+.+.+....+.+......+..+++++++.+..+..++....+...+..+.....|..
T Consensus 196 p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~ 275 (1074)
T KOG0250|consen 196 PKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAW 275 (1074)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 255 VYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLE 334 (812)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (812)
+.....++......+...+..+..+.+.++.....+..+...+...++.+..+..+......++..+...+..+..+...
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888888877778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 335 LEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEK 414 (812)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 414 (812)
+..++....+.+......+..++..+..+..+.......++.+.+.++..|..++..++..+..|..+.+.+........
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888888888888888888888888888877766677777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCcCCCcccccccEEecCCCccHHH
Q 003532 415 NEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPA 494 (812)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 494 (812)
.+...++..+..+...+......+..+.....+.+..|| +.+..++..+...+..|..+|.||++.+|++.+ +.|..+
T Consensus 436 ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~-~KWa~a 513 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE-PKWALA 513 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC-cHHHHH
Confidence 888888888999999999999999999988888899999 999999999999888888899999999999998 899999
Q ss_pred HHHHHhcccceeeecChhhHHHHHHHHHHhCcCCcceEEEecCCCCCCCCCCCCCCCCCccchhccccCchhHHHHhhcc
Q 003532 495 VEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDM 574 (812)
Q Consensus 495 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 574 (812)
|+.++|+.+.+|+|.+..++..+..+++..+++..++..+.+..+...++....|+-.++.+++.+.++++.+...+++.
T Consensus 514 IE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~ 593 (1074)
T KOG0250|consen 514 IERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDK 593 (1074)
T ss_pred HHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhh
Confidence 99999999999999999999999999998887643333344444444555555555557888999999999999999999
Q ss_pred CccceEEEeCChHHHHHHhhhc-CCCCcceEEcccCceeeecCC---cccccccccccCCccccCCHHHHHHHHHHHHHH
Q 003532 575 GSAERQVLVRDYDVGKAVAFEQ-RISNLKEVYTLDGHKMFSRGS---VQTILPLNRRLRTGRLCGSYDEKIKDLERAALH 650 (812)
Q Consensus 575 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~ 650 (812)
..+...++..+...+..+.... .+.+...++|.+|..+...|. .....+...+ ++..........+.+|+.++..
T Consensus 594 s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r-~~~~~~~s~d~~ie~le~e~~~ 672 (1074)
T KOG0250|consen 594 SGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR-RPGVDEFSFDDEIEDLEREASR 672 (1074)
T ss_pred ccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-CccccchhHhHHHHHHHHHHHH
Confidence 9999999999866666665433 244666788999988877766 1111111111 3345556688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCCCCccchhHHHHHHHHHHH
Q 003532 651 VQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNS--FAADAGPPSASAVDEISQEISNIQE 728 (812)
Q Consensus 651 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~l~~ 728 (812)
++.++..++......+..+..++..+..+...+.+++..+.....++..++.. .... -...++.+..++.....
T Consensus 673 l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~----~~~~~~~l~~ei~~~~~ 748 (1074)
T KOG0250|consen 673 LQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQV----DISKLEDLAREIKKKEK 748 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----chhhhHHHHHHHHHHHH
Confidence 99988888888888888888888888888888888888888888888877773 2221 12234455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 729 EIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNL 786 (812)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (812)
+++.....+..+.+.+..+..+...+...++.....+......+..+..++.....++
T Consensus 749 eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~ 806 (1074)
T KOG0250|consen 749 EIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKL 806 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555444444444444444333333
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.2e-52 Score=483.42 Aligned_cols=642 Identities=21% Similarity=0.309 Sum_probs=395.3
Q ss_pred eeEeEEEEeecccc-cceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCce------eEE
Q 003532 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSY------AMV 92 (812)
Q Consensus 20 m~i~~i~i~nf~~~-~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~------~~v 92 (812)
|+|++|.+.||+|| ++++|+|+||+|+|+||||||||+|+|||+||||..+.+.+|++.+.++|+.|... |+|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 89999999999999 56889999999999999999999999999999999999889999999999988876 999
Q ss_pred EEEEEeCCCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhc
Q 003532 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (812)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (812)
+++|.+.++ +.+..++ +++|+|++. .|.|.|+| ||..+ +..++..++...|++..++ ++++||++..|+.
T Consensus 81 ~l~fdN~d~--~~~~~~~-ei~v~Rri~r~g~S~Y~I---Ng~~~--~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~ 151 (1163)
T COG1196 81 ELTFDNSDN--TLPLEYE-EISVTRRIYRDGESEYYI---NGEKV--RLKDIQDLLADSGIGKESY-SIVSQGKVEEIIN 151 (1163)
T ss_pred EEEEeCCCC--cCCcccc-eEEEEEEEEEcCCcEEEE---CCcEe--eHHHHHHHHHhcCCCCCCC-ceeecccHHHHHc
Confidence 999999863 3444444 899999998 88899999 68877 5679999999999999988 9999999999998
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003532 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 251 (812)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (812)
. .|.++..++....++..+..........+......+..+...+..+..+++.+..+.+....+..+..++..+...+.
T Consensus 152 ~-kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 152 A-KPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred C-CHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 677888899999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHH
Q 003532 252 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTS-------EVRRRKDELQQS 324 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~ 324 (812)
...+.....++..+...+..+...+..+...+......+..+...+..+...+........ .+...+..+...
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777777777777766666666666666666665555555554444433322 222222222222
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HhhHHHHHH---
Q 003532 325 ISLATKEKLELE-------GELVRNTSYMQKM-------VNRVKGLEQQVHDIQEQHV----------RNTQAEESE--- 377 (812)
Q Consensus 325 ~~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~--- 377 (812)
+........... ..+......+... ......+............ ......+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1163)
T COG1196 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222211111111 1111111111111 0001111110111000000 000111111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 378 ----IEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEK--------------NEIRRISDEIEDYDKKCREIRSEIR 439 (812)
Q Consensus 378 ----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~l~~~l~ 439 (812)
...++..++.++..+..++..+...+..+..++..+. .++..+...+..+...+..+...+.
T Consensus 391 ~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (1163)
T COG1196 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222211111111111111111111 1111111111111111121111111
Q ss_pred HHHhccCCccc----------cCC--cccHHHHHHHHHhhcCCCcCCCcccccccEEecCCCccHHHHHHHHhcccceee
Q 003532 440 ELQQHQTNKVT----------AFG--GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFI 507 (812)
Q Consensus 440 ~l~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~ 507 (812)
.++........ .+. ..........+...... .++++|++++++.|. +.|..|++.++|+.++++|
T Consensus 471 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~--~~y~~Aie~alG~~l~~vV 547 (1163)
T COG1196 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGPVAELIKVK--EKYETALEAALGNRLQAVV 547 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccchHHHhcCcC--hHHHHHHHHHcccccCCee
Confidence 11111000000 000 00000011111111222 456799999999985 5899999999999999999
Q ss_pred ecChhhHHHHHHHHHHhCcCCcceEEEecCCCCCCCCCCCCCCCCCccchhccccCchhHHHHhhccCccceEEEeCChH
Q 003532 508 VTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYD 587 (812)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~ 587 (812)
|++..++..+..+++..+.++.+|.+++...+....+... ..+.++.+.+.+.+++ .+..++. ..++++++++++.
T Consensus 548 V~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~-~~~~~~~--~~l~~t~Iv~~l~ 623 (1163)
T COG1196 548 VENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDP-KYEPAVR--FVLGDTLVVDDLE 623 (1163)
T ss_pred eCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCH-HHHHHHH--HHhCCeEEecCHH
Confidence 9999999999999999999999998887665444433332 2234455567777775 2222221 2356789999999
Q ss_pred HHHHHhhhcCCCCcceEEcccCceeeecCCccccccccccc--CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 588 VGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRL--RTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDS 665 (812)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~i~~l~~~~~~l~~~~~~l 665 (812)
.+..+...... ..+++|.+|..+..+|.+.++....... ....+. .+..++..+...+..+...+..+......+
T Consensus 624 ~A~~l~~~~~~--~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1163)
T COG1196 624 QARRLARKLRI--KYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELK-ELEEELAELEAQLEKLEEELKSLKNELRSL 700 (1163)
T ss_pred HHHHHHHhcCC--CceEEecCCcEEeCCeeeecCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876642 2379999999999888887762221110 000011 233444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 003532 666 EERLQDLQQHQQNVKR 681 (812)
Q Consensus 666 ~~~~~~~~~~~~~~~~ 681 (812)
...+..+...+..++.
T Consensus 701 ~~~~~~~~~~~~~~~~ 716 (1163)
T COG1196 701 EDLLEELRRQLEELER 716 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444433333333
No 3
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-47 Score=391.75 Aligned_cols=650 Identities=15% Similarity=0.204 Sum_probs=367.7
Q ss_pred eeEeEEEEeecccccceEE--EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc----eeEEE
Q 003532 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVE 93 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i--~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~v~ 93 (812)
|+|+.|.|.||++|.+.++ +|+|+.|||+|.||||||+++.||+|+|.+..+...|. .-.+++|.|++ +|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E-~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKRE-ERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHH-HHhhhhhcCCCcceEEEEEE
Confidence 8999999999999965554 49999999999999999999999999998877664333 33678888874 58999
Q ss_pred EEEEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcCC
Q 003532 94 VELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (812)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 173 (812)
++|.+.++... ..+.++.+.|.++..+..|++ +++.| +.+++-.+++..|+...|||++++||++..+...
T Consensus 80 IvF~nsdnr~~---~~k~Ev~lrRtVGlKKDeY~l---D~k~V--tk~evvnLLESAGFSrsNPYyIV~QGkI~~La~a- 150 (1200)
T KOG0964|consen 80 IVFDNSDNRLP---RGKSEVSLRRTVGLKKDEYFL---DNKMV--TKGEVVNLLESAGFSRSNPYYIVPQGKINELANA- 150 (1200)
T ss_pred EEEeCcccccC---CCCCeEEEEEeecccchhhhc---ccccc--cHHHHHHHHHhcCcccCCCceEeechhhHHhhcC-
Confidence 99999876522 356789999999988899999 68888 6689999999999999999999999999986654
Q ss_pred CchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003532 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWS 253 (812)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (812)
++..+++++....+..-+.....+.-.-+++-...-..+..-+..++..+..++.+.+.+..+..+......+++.+...
T Consensus 151 kD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr 230 (1200)
T KOG0964|consen 151 KDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR 230 (1200)
T ss_pred CcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh
Confidence 77899999887766555544444333333333333333333444444455555555555555555555555555555444
Q ss_pred hHHHHHHHHHHHHHHHHHH---------------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003532 254 WVYDVDRQLKEQTLKIEKL---------------------KDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTS 312 (812)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (812)
.+.++...+..+....... ..++.++...+..+..+.+.+.......-.....++-++.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 4444444443333333222 2222222222222221111111111111111111111111
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 003532 313 EVRR--------------RKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGL---------------------- 356 (812)
Q Consensus 313 ~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 356 (812)
++.. .+..+...+.....++..+.-.+..+..+-..+..++..+
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 1111 1222222222223333332222222222222222222222
Q ss_pred -----HHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 003532 357 -----EQQVHDIQEQHV------RNTQAEESEIEAKLKELQCEIDAANITLSRM--------------KEEDSALSEKLS 411 (812)
Q Consensus 357 -----~~~l~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l--------------~~~~~~~~~~~~ 411 (812)
..++..+...+. +..+.++..++..+....+++..+...+... ..+++++...+.
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk 470 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRK 470 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222322222221 1111222222222322223333332222222 222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCC-cCCCcccccccEEecCCCc
Q 003532 412 KEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKF-KSPPIGPIGSHVTLVNGDT 490 (812)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 490 (812)
.+|.+-..++..+..+...+...+..+... ++ +++..-+..+......+ +.+++|++++++.|. +.
T Consensus 471 ~lWREE~~l~~~i~~~~~dl~~~~~~L~~~----------~~-r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~--~~ 537 (1200)
T KOG0964|consen 471 ELWREEKKLRSLIANLEEDLSRAEKNLRAT----------MN-RSVANGIDSVRKIKEELKPNGVFGTVYELIKVP--NK 537 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc-chhhhhhHHHHHHHHHhcccccceehhhhhcCC--HH
Confidence 333444444444444444433333333222 11 22221122222222122 356899999999984 68
Q ss_pred cHHHHHHHHhcccceeeecChhhHHHHHHHHHHhCcCCcceEEEecCCCCCCCCCCCCCC-CCCccchhccccCchhHHH
Q 003532 491 WAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPH-TKHPTTLSVLQSDNPTVIN 569 (812)
Q Consensus 491 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 569 (812)
|.+|++.+.|+.++++||++.+.+..+...+...++++++|.|++.... +....|. ....|++..+.+.+ .+..
T Consensus 538 f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~----r~v~yp~~sdaiPli~kl~y~p-~fdk 612 (1200)
T KOG0964|consen 538 FKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA----RDVEYPKDSDAIPLISKLRYEP-QFDK 612 (1200)
T ss_pred HHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch----hhccCCCCCCccchHHHhCcch-hhHH
Confidence 9999999999999999999999998877777777889999998764432 2221221 33456777777764 2333
Q ss_pred HhhccCccceEEEeCChHHHHHHhhhcCCCCcceEEcccCceeeecCCcccccccccccCC--ccccCCHHHHHHHHHHH
Q 003532 570 VLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRT--GRLCGSYDEKIKDLERA 647 (812)
Q Consensus 570 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~l~~~ 647 (812)
.+. +.++++++|.++..+.+.+....+ .++|.+|+.+...|.+.++.......+. ..-....+.++.+|+..
T Consensus 613 a~k--~Vfgktivcrdl~qa~~~ak~~~l----n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~ 686 (1200)
T KOG0964|consen 613 ALK--HVFGKTIVCRDLEQALRLAKKHEL----NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQES 686 (1200)
T ss_pred HHH--HHhCceEEeccHHHHHHHHHhcCC----CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 332 346789999999999999987776 6899999999999988876653322111 01112234455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003532 648 ALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNS 703 (812)
Q Consensus 648 i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 703 (812)
+..++.++.....++..+...+..++..+.........+...+..+..+...++..
T Consensus 687 L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s 742 (1200)
T KOG0964|consen 687 LDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQES 742 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666666666655555555555555555444444444444444433333
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-47 Score=399.76 Aligned_cols=587 Identities=17% Similarity=0.230 Sum_probs=320.6
Q ss_pred CCCCeeEeEEEEeeccccc-ceEE-EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc-----
Q 003532 16 RSGAGTITRVRLENFMCHS-SLQI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----- 88 (812)
Q Consensus 16 ~~~~m~i~~i~i~nf~~~~-~~~i-~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~----- 88 (812)
.++.+.|..|.+.||+||. .+.| +|++.|++|+||||||||+++|+|.|+||.++.. .|..+++.+||.+.+
T Consensus 80 ~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k-iR~~klS~LIh~S~~~~~l~ 158 (1293)
T KOG0996|consen 80 GGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK-IRSKKLSALIHKSDGHPNLQ 158 (1293)
T ss_pred CCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH-HhHHHHHHHHhccCCCCCCc
Confidence 5678999999999999995 4555 8999999999999999999999999999999877 788899999985542
Q ss_pred eeEEEEEEEeC---CCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccc
Q 003532 89 YAMVEVELKNR---GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQD 164 (812)
Q Consensus 89 ~~~v~l~~~~~---~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 164 (812)
+|.|++.|.-- +++.| -.+.|..++|+|..+ .+.+.|+| +|+.. +.+++..+|..-|+|.....|++-||
T Consensus 159 SCsV~vhFq~iiD~~~~~~-E~vp~s~~~ItRtA~~~NsSkY~I---ngk~a--s~~~V~~lLk~~gIDleHNRFLILQG 232 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPGGTY-EVVPDSEFTITRTAFRDNSSKYYI---NGKEA--SFKDVTKLLKSHGIDLEHNRFLILQG 232 (1293)
T ss_pred ceeEEEeeeeeeccCCCce-eecCCCeeEEEehhhhCCCceEeE---CCccc--cHHHHHHHHHhcCCCCccceeeeehh
Confidence 59999999843 22332 224567899999988 78888999 56666 56799999999999999999999999
Q ss_pred hhhhhhcCCC------chhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003532 165 KSREFLHSGN------DKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEE 238 (812)
Q Consensus 165 ~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~ 238 (812)
.+..+....+ +...+.++-...+...+..-++....++..+.+...+....+.....+...++......-.+..
T Consensus 233 EVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~ 312 (1293)
T KOG0996|consen 233 EVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLK 312 (1293)
T ss_pred hHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9998765532 2334555544444444444555555566666655555555555555555555544443322222
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhH----------------------------------------
Q 003532 239 ITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPR---------------------------------------- 278 (812)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 278 (812)
...++..+...+....+......+......+..+...+..
T Consensus 313 kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~ 392 (1293)
T KOG0996|consen 313 KENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKK 392 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222221111111112222222111111111111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 003532 279 ----------CQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRN------ 342 (812)
Q Consensus 279 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 342 (812)
.++.+..+...+..+.++++.......+++.........+...+.++..+.......+..+...
T Consensus 393 ~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 393 FQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111222222222222222222221111112222222222222222111111111111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 003532 343 -----TSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEI-------EAKLKELQCEIDAAN-------ITLSRMKEED 403 (812)
Q Consensus 343 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~-------~~~~~l~~~~ 403 (812)
..++..++.++..+..++.....++ +-.+.++..+ ...+.+++..+.... ..+..+...+
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~-~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSEL-DVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111222222211111111111 0001111111 111222222222222 2222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcC-CCcCCCccccccc
Q 003532 404 SALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHH-KFKSPPIGPIGSH 482 (812)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 482 (812)
..+..++.+....+..+..+...+...+..+...+..+....... .....++..+.+.+. .-.++++|.++++
T Consensus 552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~------~s~~kVl~al~r~kesG~i~Gf~GRLGDL 625 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS------RSRNKVLDALMRLKESGRIPGFYGRLGDL 625 (1293)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHcCCCCccccccccc
Confidence 222222222222233333333322333333333333322211111 111223333433221 1134578888888
Q ss_pred EEecCCCccHHHHHHHHhcccceeeecChhhHHHHHHHHHHhCcCCcceEEEecCCCCC-CCCCCCCCCCCCccchhccc
Q 003532 483 VTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRL-SLPHHMLPHTKHPTTLSVLQ 561 (812)
Q Consensus 483 ~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 561 (812)
..+ + +.|+.||.. ++..++++||++..++..++.+++..++++.+|+++|-..... ...+ ..++..+|.+++.+.
T Consensus 626 g~I-d-~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~-i~tpenvPRLfDLv~ 701 (1293)
T KOG0996|consen 626 GAI-D-EKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP-ITTPENVPRLFDLVK 701 (1293)
T ss_pred ccc-c-hHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC-CCCCCCcchHhhhhc
Confidence 776 4 799999999 5666899999999999999999999999999999887443111 1111 222266788899999
Q ss_pred cCchhHHHHhhccCccceEEEeCChHHHHHHhhhcCCCCcceEEcccCceeeecCCccccccc
Q 003532 562 SDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPL 624 (812)
Q Consensus 562 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (812)
|.++.+...+. ..+.+++++++++.|.++++....++ +++|++|.++..+|.+++++..
T Consensus 702 ~~d~~~r~aFY--faLrdtLV~d~LeQAtRiaygk~rr~--RVvTL~G~lIe~SGtmtGGG~~ 760 (1293)
T KOG0996|consen 702 CKDEKFRPAFY--FALRDTLVADNLEQATRIAYGKDRRW--RVVTLDGSLIEKSGTMTGGGKK 760 (1293)
T ss_pred cCCHHHHHHHH--HHHhhhhhhcCHHHHHHHhhcCCCce--EEEEecceeecccccccCCCCc
Confidence 98877766553 34678899999999999998765433 6999999999999998877644
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-47 Score=390.93 Aligned_cols=562 Identities=17% Similarity=0.260 Sum_probs=314.8
Q ss_pred eeEeEEEEeecccccceE-E-EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCC----ceeEEE
Q 003532 20 GTITRVRLENFMCHSSLQ-I-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~-i-~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~----~~~~v~ 93 (812)
|+|+.|.|.||++|..++ | .|+|.||+|+|-||||||+|+|+|+|+||-..-...|+..+.++|+.+. +.|+|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 899999999999995444 4 8999999999999999999999999999998887789999999997666 789999
Q ss_pred EEEEeCCCCCCCcccc--CCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhh
Q 003532 94 VELKNRGEDAFKPEIF--GDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (812)
Q Consensus 94 l~~~~~~~~~~~~~~~--~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (812)
++|.|.+.... |..| -++++|+|.+. +|++.|+|+ |... ....++.++.+.|+++.||+|+++||++...|
T Consensus 81 VvFdNtdk~~S-P~G~E~h~EIsVtRqIv~gG~~KylIN---Gh~a--~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVL 154 (1174)
T KOG0933|consen 81 VVFDNTDKARS-PLGYEHHDEISVTRQIVVGGTNKYLIN---GHLA--QNSKVQDLFCSVQLNVNNPHFLIMQGRITKVL 154 (1174)
T ss_pred EEecCCCcccC-CCCcccCCeeEEEEEEEecCceeEEEc---CeeC--chhHHHHHHHHhcccCCCCceEEecccchhhh
Confidence 99998865321 1122 25899999999 999999994 6555 45689999999999999999999999987766
Q ss_pred cCCCchhHHHHHHhhh---------------------hHHHHHH------------------------------------
Q 003532 171 HSGNDKDKFKFFFKAT---------------------LLQQVND------------------------------------ 193 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~---------------------~~~~~~~------------------------------------ 193 (812)
...+ .+-+..+-.+. .+.+++.
T Consensus 155 NMKp-~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~ 233 (1174)
T KOG0933|consen 155 NMKP-SEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRI 233 (1174)
T ss_pred cCCc-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532 22222221111 1111111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhh-
Q 003532 194 -----------LLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEH---------VEEITQDLQRLKKKLAW- 252 (812)
Q Consensus 194 -----------~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~- 252 (812)
....+...+......+..+...+.....+++.++.+++.++. ...+..++..+......
T Consensus 234 ~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~ 313 (1174)
T KOG0933|consen 234 CIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITRE 313 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence 011111111111122222222222222222222222222211 11222222222221110
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------
Q 003532 253 -SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQS------- 324 (812)
Q Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 324 (812)
..+......+...+.+++.+...+.+....+...+..+.......+............+...+...+.+..-
T Consensus 314 ~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~ 393 (1174)
T KOG0933|consen 314 ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDE 393 (1174)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 111111222222222222222222222222222222222222222222222222111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 325 ISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDS 404 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 404 (812)
-..+..++......+......++...-.+..+..++.....+. .+...+.......++.++..+.+++.++.
T Consensus 394 e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~--------~t~~~~~~~~~~~ld~~q~eve~l~~~l~ 465 (1174)
T KOG0933|consen 394 EKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGEL--------ATASAEYVKDIEELDALQNEVEKLKKRLQ 465 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113334444444444444444444444444444444443333 33333333344444445555555555444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCcCCCcccccc
Q 003532 405 ALS---EKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGS 481 (812)
Q Consensus 405 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (812)
.+. .....+......+...+..+...+..|...+..+...|..+.+.|++. .+.|.++.
T Consensus 466 ~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs------------------~V~G~Va~ 527 (1174)
T KOG0933|consen 466 SLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRS------------------KVKGLVAK 527 (1174)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHH------------------HHHHHHHH
Confidence 433 233455566666666666667777777766666666677766666522 23566677
Q ss_pred cEEecCCCccHHHHHHHHhcccceeeecChhhHHHHHHHHHHhCc-CCcceEEEecCCCCCCCCCCCC------CCCCCc
Q 003532 482 HVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANY-NHLQIIIYDFSRPRLSLPHHML------PHTKHP 554 (812)
Q Consensus 482 ~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 554 (812)
++.|++ ..+.+|++.+.|+.++++||++..++..+.. ...+ .++++++++-...... ++.++ ......
T Consensus 528 Li~vkd-~~~~tAle~~aGgrLynvVv~te~tgkqLLq---~g~l~rRvTiIPLnKI~s~~~-s~~v~~~ak~v~~~~v~ 602 (1174)
T KOG0933|consen 528 LIKVKD-RSYATALETTAGGRLYNVVVDTEDTGKQLLQ---RGNLRRRVTIIPLNKIQSFVL-SPNVLQAAKNVGNDNVE 602 (1174)
T ss_pred HheeCc-chHHHHHHHHhcCcceeEEeechHHHHHHhh---cccccceeEEEechhhhhccC-CHhHHHHHHHhcCchHH
Confidence 888887 8889999999999999999999888865543 1122 3566666653322211 11111 123344
Q ss_pred cchhccccCchhHHHHhhccCccceEEEeCChHHHHHHhhhcCCCCcceEEcccCceeeecCCccccccc
Q 003532 555 TTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPL 624 (812)
Q Consensus 555 ~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (812)
..++.+.+++.....+. ..++++++|++.+.|+.+++...++. +.||.+|+.+.+.|.++++...
T Consensus 603 ~al~Li~yd~~l~~ame---fvFG~tlVc~~~d~AKkVaf~~~i~~--rsVTl~GDV~dP~GtlTGGs~~ 667 (1174)
T KOG0933|consen 603 LALSLIGYDDELKKAME---FVFGSTLVCDSLDVAKKVAFDPKIRT--RSVTLEGDVYDPSGTLTGGSRS 667 (1174)
T ss_pred HHHHHhcCCHHHHHHHH---HHhCceEEecCHHHHHHhhccccccc--ceeeecCceeCCCCcccCCCCC
Confidence 55677777654322222 34688999999999999999887532 5699999999998888766544
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2.2e-45 Score=442.75 Aligned_cols=217 Identities=24% Similarity=0.342 Sum_probs=174.7
Q ss_pred eEeEEEEeeccccc-ceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhc-----CCceeEEEE
Q 003532 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVEV 94 (812)
Q Consensus 21 ~i~~i~i~nf~~~~-~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~-----~~~~~~v~l 94 (812)
+|++|.|.||++|. .++|+|+||+|+|+||||||||||||||.||||+.+....|+..+.++|+. +...++|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999996 589999999999999999999999999999999987766788778888877 345789999
Q ss_pred EEEeCCCCCCCccccCCeEEEEEEEe---CCc-CeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhh
Q 003532 95 ELKNRGEDAFKPEIFGDSIIIERRIT---EST-STTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (812)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~r~~~---~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (812)
+|.++++. +...+.|+|.+. .|. +.|++ +|..+ +..++..++..+|+++..+. ++.||.+..|+
T Consensus 81 ~f~~~~~~------~~~~~~i~r~~~~~~~~~~~~~~~---n~~~~--~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~ 148 (1164)
T TIGR02169 81 TFKNDDGK------FPDELEVVRRLKVTDDGKYSYYYL---NGQRV--RLSEIHDFLAAAGIYPEGYN-VVLQGDVTDFI 148 (1164)
T ss_pred EEEcCCCC------CCCcEEEEEEEEEcCCCCcceEEE---CCccc--cHHHHHHHHHHcCCCcCcce-EEecchHHHHH
Confidence 99876432 113577877654 344 57887 57766 56789999999999887654 57799999988
Q ss_pred cCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (812)
.. .|..+..++....++..+...+..+...+....+.+.++...+..+..+++.++.+.+....+..+...+.......
T Consensus 149 ~~-~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~ 227 (1164)
T TIGR02169 149 SM-SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227 (1164)
T ss_pred CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 56778788877778888888899999999999999999999999999999888888887766666655554444333
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-44 Score=373.30 Aligned_cols=687 Identities=16% Similarity=0.221 Sum_probs=423.3
Q ss_pred CeeEeEEEEeecccccce-EE-EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEE
Q 003532 19 AGTITRVRLENFMCHSSL-QI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~-~i-~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~ 96 (812)
||+|..|+|.||+||.++ .| +|+ .||+|+||||||||++||||.||||-.++. .|+....++|+..+..+.|++.|
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~-LR~~~lkdLIyg~~i~~~v~l~Y 78 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSH-LRVSHLKDLIYGKPIRKPVTLKY 78 (1141)
T ss_pred CCceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcc-cccchHHHHhcCCccCCchhhee
Confidence 799999999999999554 45 555 799999999999999999999999999887 79999999998666677788777
Q ss_pred EeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcCCCch
Q 003532 97 KNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDK 176 (812)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 176 (812)
.-++ |.....+|.+..|.+.|.| +|+.+ +..++...+..+|+-+....|.+-||.+..+.. ..|.
T Consensus 79 ~~~d---------g~~~~F~R~I~~G~seY~I---Dne~V--T~eeY~~eLekinIlVkARNFLVFQGdVE~IA~-k~Pk 143 (1141)
T KOG0018|consen 79 EEGD---------GETRRFTRAINGGTSEYMI---DNEIV--TREEYLEELEKINILVKARNFLVFQGDVEKIAG-KNPK 143 (1141)
T ss_pred ecCC---------chhhhhhhhhcCCceeEEE---cceec--cHHHHHHHHhhcceeeeeeeEEEecChHHHHhc-cCHH
Confidence 7653 4567888988888999999 68888 567899999999999888888888999988654 4777
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q 003532 177 DKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 256 (812)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (812)
+.-.+|-...+=.++...++.++.............-.....+..+....+......+.+..+..+..........+.+.
T Consensus 144 Elt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLf 223 (1141)
T KOG0018|consen 144 ELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELF 223 (1141)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87777776666666667777777777777777776666777777777767766666677777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------------HHHHHH
Q 003532 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRR-------------KDELQQ 323 (812)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~ 323 (812)
..+..+..+..++.....++..+...++.....+.....+......++......+...... ......
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 6777777777777777666666665555555544444433333333222222222221111 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------------------HHH
Q 003532 324 SISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQ----------------------------AEE 375 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------~~~ 375 (812)
++......+...+..+......+..++.++..+......++.++....+ .++
T Consensus 304 rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el 383 (1141)
T KOG0018|consen 304 RLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEEL 383 (1141)
T ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHH
Confidence 3333333333333333333333433333333333322222222211111 001
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 376 ---------------------SEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREI 434 (812)
Q Consensus 376 ---------------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 434 (812)
.+++..+..+...+.++......+...+.++...+..+...+..++..+.....+...+
T Consensus 384 ~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~ 463 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYEL 463 (1141)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHH
Confidence 11111111122222222222222222222222222222222222222222222222222
Q ss_pred HHHHHHHHhccCCccccCC-cccHHHHHHHHHhhcCCCcCCCcccccccEEecCCCccHHHHHHHHhcccceeeecChhh
Q 003532 435 RSEIRELQQHQTNKVTAFG-GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKD 513 (812)
Q Consensus 435 ~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~ 513 (812)
...+.+............. +.+.......+..+++.| ++++|.+.+++.... ..|..|+..++|..+.+++|++..+
T Consensus 464 n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~f-Pgv~GrviDLc~pt~-kkyeiAvt~~Lgk~~daIiVdte~t 541 (1141)
T KOG0018|consen 464 NEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLF-PGVYGRVIDLCQPTQ-KKYEIAVTVVLGKNMDAIIVDTEAT 541 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhC-CCccchhhhcccccH-HHHHHHHHHHHhcccceEEeccHHH
Confidence 2223222222211111111 112222333444444443 455688888888765 6899999999999999999999999
Q ss_pred HHHHHHHHHHhCcCCcceEEEecCCCCCCCCCCCCCCCCCccchhccccCchhHHHHhhccCccceEEEeCChHHHHHHh
Q 003532 514 ALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVA 593 (812)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 593 (812)
+..|+.|++...+++.+|.++++..........+.+ .++..+++.+.+.+..-..+. ...++.++|+....|+.++
T Consensus 542 a~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~-~g~rlv~Dvi~ye~e~eka~~---~a~gn~Lvcds~e~Ar~l~ 617 (1141)
T KOG0018|consen 542 ARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLREL-GGVRLVIDVINYEPEYEKAVQ---FACGNALVCDSVEDARDLA 617 (1141)
T ss_pred HHHHHHHHHHhccCCccccchhhhhcCcccccccCc-CCeEEEEEecCCCHHHHHHHH---HHhccceecCCHHHHHHhh
Confidence 999999999999999999988866433222222222 345566788887753222222 3357899999999999999
Q ss_pred hhcCCCCcceEEcccCceeeecCCcccccccccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 003532 594 FEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK---RKRDSEERLQ 670 (812)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~~~~~l~~---~~~~l~~~~~ 670 (812)
+....+. .+++++|..+..+|.++++..... |+ +..+..|......+..++.++.. +....+..+.
T Consensus 618 y~~~~r~--k~valdGtl~~ksGlmsGG~s~~~-wd--------ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~ 686 (1141)
T KOG0018|consen 618 YGGEIRF--KVVALDGTLIHKSGLMSGGSSGAK-WD--------EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIH 686 (1141)
T ss_pred hcccccc--eEEEeeeeEEeccceecCCccCCC-cC--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9876533 789999998888887766655422 22 23444444444444444444433 4445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 671 DLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSM 744 (812)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 744 (812)
.++..+.-...++..+...+...+.++..++..+.. ....+..+...+...+..+.++....+.++..+
T Consensus 687 ~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 687 GLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776 666777777777777777766666666555443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=2.6e-40 Score=400.83 Aligned_cols=257 Identities=20% Similarity=0.311 Sum_probs=197.0
Q ss_pred eEeEEEEeeccccc-ceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc------eeEEE
Q 003532 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVE 93 (812)
Q Consensus 21 ~i~~i~i~nf~~~~-~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~------~~~v~ 93 (812)
+|.+|.|.||++|. ..+|+|+||+|+|+|||||||||||+||.||||+.++...|+....++|+.|+. .++|.
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999995 579999999999999999999999999999999988777888888899988873 57899
Q ss_pred EEEEeCCCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcC
Q 003532 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (812)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (812)
+.|.++++. .+.+....++|.|.+. .|.+.|++ +|..+ +..++..++..+|++..++ .+++||.+..|+..
T Consensus 81 ~~~~~~~~~--~~~~~~~~~~i~r~~~~~~~~~~~~---~~~~~--~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 81 LVFDNSDGL--LPGADYSEISITRRLYRDGESEYFI---NGQPC--RLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEA 152 (1179)
T ss_pred EEEecCCCC--CCCCCCCeEEEEEEEeeCCCceeeE---CCCcc--cHHHHHHHHhccCCCcccc-hheecccHHHHHcC
Confidence 999865321 1111125689999988 67888888 46655 4567889999999988764 68899999999966
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003532 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAW 252 (812)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (812)
.|..++..+....++..+...+.....++..+.+.+.++..++..+..+.+.++.+.+...++..+...+.........
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (1179)
T TIGR02168 153 -KPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLV 231 (1179)
T ss_pred -CHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999888888898899999999999999999999999999999999988887777666666655554444333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003532 253 SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSR 286 (812)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (812)
..+..+...+..+...+..+...+..+...+..+
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQEL 265 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 9
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.4e-40 Score=342.21 Aligned_cols=659 Identities=18% Similarity=0.232 Sum_probs=399.6
Q ss_pred CCCCCCCCeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeE
Q 003532 12 YGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAM 91 (812)
Q Consensus 12 ~~~~~~~~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~ 91 (812)
.+++.|.-+.|.+|+++||-+|...++-|+|.+|+|+||||||||||+.||+.||||+|...+|+.....||+.|++.++
T Consensus 12 ~~~~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~ 91 (1072)
T KOG0979|consen 12 LNYSSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGY 91 (1072)
T ss_pred CCcccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccce
Confidence 34445667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhh
Q 003532 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (812)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (812)
|++++-+.+ ..++|+|.+. .+.+.|+++ |..+ +..++.++...|++.++|+|.|++|+++..|.
T Consensus 92 IEI~l~~~~----------e~~~ItR~I~~~k~S~y~iN---~~a~--t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa 156 (1072)
T KOG0979|consen 92 IEIELKDKD----------ETLTITRLISRDKESKYFIN---DSAT--TKSEIEELVAHFNIQIDNLCQFLPQDKVKEFA 156 (1072)
T ss_pred EEEEEecCC----------CceEEEEEEeecCCcceeec---cchh--hhHHHHHHHHHHhcccCchhhhccHHHHHHHH
Confidence 999998763 4689999999 777999994 6555 66799999999999999999999999999998
Q ss_pred cCCCchhHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 171 HSGNDKDKFKFFFKAT---LLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLK 247 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 247 (812)
.. ++.+.+.....+. .+-..-..|..+..+.+.+...+......+..+++++..+...++.+.+.......+.-+.
T Consensus 157 ~L-~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~ 235 (1072)
T KOG0979|consen 157 RL-SPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLE 235 (1072)
T ss_pred cC-ChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4455554443332 2444555677778888888888888888888888888888888888888888888888887
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003532 248 KKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL 327 (812)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (812)
....|..+......+.........+..+++.+.+....+......++.+..+....+......+.............+..
T Consensus 236 ~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~ 315 (1072)
T KOG0979|consen 236 KKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKE 315 (1072)
T ss_pred HhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766666666666666666666666666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 328 ATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALS 407 (812)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 407 (812)
....+..+...+..++.........+....+.+.+++..+....-. .....+..++..++..... +.+.......+
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~--e~~~~~~~ei~~~~~~~~~--~~~~~~~~~id 391 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDP--ENPVEEDQEIMKEVLQKKS--SKLRDSRQEID 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc--cccchhHHHHHHHHHHHHh--hhhhhhhhhhh
Confidence 6666666666655555555555566666666665555544211100 0011111111111111110 01111100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCccccCCcccHHHHHHHHHhhcCCCcCCCcccccccEEe
Q 003532 408 EKLSKEKNEIRRISDEIEDYDKKCREIRSEIR--ELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTL 485 (812)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (812)
..........++......+........ .... ...+. +.+..+..++......|..++++|.+-.+.+
T Consensus 392 -----~~~~~~~~~~~l~~~kr~~~~~~~~~~~k~~~~-----l~~~~-~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~ 460 (1072)
T KOG0979|consen 392 -----AEQLKSQKLRDLENKKRKLKQNSDLNRQKRYRV-----LRQGS-SDAYDAYQWLRENRSEFKDEVYEPPIMTLNV 460 (1072)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-----hccCc-hHHHHHHHHHHHCHHHhcccccCCceEEEec
Confidence 000000001111111111111110000 0110 01111 4666777788777767777889998778888
Q ss_pred cCCCccHHHHHHHHhc-ccceeeecChhhHHHHHHHHHHhCcCCcceEEEe----cCCCCCCCCCCCCCCCCCccchhcc
Q 003532 486 VNGDTWAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQIIIYD----FSRPRLSLPHHMLPHTKHPTTLSVL 560 (812)
Q Consensus 486 ~~~~~~~~a~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 560 (812)
++ +.++.+++..+|- ++.+|+|.+.++-..+...+.+..+...+..++- +.....+.+...+...++.+++..+
T Consensus 461 k~-~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f 539 (1072)
T KOG0979|consen 461 KN-AEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNF 539 (1072)
T ss_pred CC-hHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhh
Confidence 88 8899999998885 6778999988887776666655322111111111 1111111112222224455555555
Q ss_pred ccCchhHHHHhhccCccceEEEeCChH-HHH-----------------HHhhhcCCCCcceEEcccCceeeecC-Ccccc
Q 003532 561 QSDNPTVINVLVDMGSAERQVLVRDYD-VGK-----------------AVAFEQRISNLKEVYTLDGHKMFSRG-SVQTI 621 (812)
Q Consensus 561 ~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 621 (812)
...+..+...||....+....+..... .+. +...++...........+.. +..+. .+...
T Consensus 540 ~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~-v~~~~~~lk~~ 618 (1072)
T KOG0979|consen 540 IEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQ-VITRNDPLKSR 618 (1072)
T ss_pred hcCcHHHHHHHHHhccccccccCcccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccce-eeecCCcchhh
Confidence 556677888888766666555433211 110 00001100000000000000 00000 00000
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 622 LPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (812)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 701 (812)
..-.............++.+..+..++......+..++.++......+......+..+.++...+...+...+.....++
T Consensus 619 ~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie 698 (1072)
T KOG0979|consen 619 NFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE 698 (1072)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 00000000011111244555556666666666667777777766666776666666666666666665555555554444
Q ss_pred hh
Q 003532 702 NS 703 (812)
Q Consensus 702 ~~ 703 (812)
..
T Consensus 699 ~~ 700 (1072)
T KOG0979|consen 699 NL 700 (1072)
T ss_pred HH
Confidence 43
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=309.85 Aligned_cols=154 Identities=27% Similarity=0.390 Sum_probs=115.8
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|++|.|.||++|++.+|+|+||+|+|+||||||||||++||.|+|||.++.. ....++++.|...++|.++|.++
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~~---~~~~~~~~~~~~~~~v~~~f~~~ 77 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKALD---DTLDDVITIGAEEAEIELWFEHA 77 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccc---ccHHHHHhCCCCcEEEEEEEEEC
Confidence 899999999999999999999999999999999999999999999999987532 34567888999999999999876
Q ss_pred CCCCCCccccCCeEEEEEEEe-CCc----CeEEEecCCCceeeccHHHHHH-HHhhcCCC--CCCCeeEeccchhhhhhc
Q 003532 100 GEDAFKPEIFGDSIIIERRIT-EST----STTVLKDHQGKRVASRKQELLE-LIDHFNID--VENPCVIMSQDKSREFLH 171 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~-~~~----~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~q~~~~~~l~ 171 (812)
| ..|.|.|.+. .|. ..+++.+ |..+..+...+.. +...+|++ .+..+++++||.+..|+.
T Consensus 78 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 78 G----------GEYHIERRVRLSGDRATTAKCVLET--PEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred C----------EEEEEEEEEecCCCCcccceeEEeC--CCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 3 4689999886 332 2344433 3222223334443 33445654 444578899999999996
Q ss_pred CCCchhHHHHHHhhhhHH
Q 003532 172 SGNDKDKFKFFFKATLLQ 189 (812)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ 189 (812)
. .|.++...+.....+.
T Consensus 146 ~-~p~~R~~ii~~l~~l~ 162 (880)
T PRK02224 146 A-TPSDRQDMIDDLLQLG 162 (880)
T ss_pred C-CHHHHHHHHHHHhCCH
Confidence 5 6667777776665543
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.9e-28 Score=284.10 Aligned_cols=178 Identities=20% Similarity=0.294 Sum_probs=126.8
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|+|||.++...++....++++.|.+.+.|.+.|..+
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 80 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKN 80 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEEC
Confidence 89999999999999888999999999999999999999999999999986443344444567898888899999999866
Q ss_pred CCCCCCccccCCeEEEEEEEeCCcCeEEEecCCC-ceeeccHHHHHHHHhh-cCCCCCCCeeEeccchhhhhhcCCCchh
Q 003532 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQG-KRVASRKQELLELIDH-FNIDVENPCVIMSQDKSREFLHSGNDKD 177 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 177 (812)
|..|+|.|.+..+.+.+.+. +| ..+..+..++...+.. ++.+.+...+|++||.+.+|+. .|..
T Consensus 81 ----------~~~~~i~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~--~~~~ 146 (880)
T PRK03918 81 ----------GRKYRIVRSFNRGESYLKYL--DGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE--SDES 146 (880)
T ss_pred ----------CeEEEEEEEEcCCceEEEEC--CCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc--CcHH
Confidence 35789999887554444332 34 2333344455544333 4555555678899999999985 4566
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLE 211 (812)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 211 (812)
+...+....++..+......+......+...+..
T Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666655555544444444444443333333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.4e-27 Score=273.12 Aligned_cols=174 Identities=23% Similarity=0.364 Sum_probs=128.9
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||++|+..+|+|+||+|+|+||||||||||++||.|||||.++ +....++++.|...++|.+.|..+
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~~ 76 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRIG 76 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998754 223478899999999999999876
Q ss_pred CCCCCCccccCCeEEEEEEEe-CCcC---eEEEecCCCceeeccHHHHHHHHh--hcCCC--CCCCeeEeccchhhhhhc
Q 003532 100 GEDAFKPEIFGDSIIIERRIT-ESTS---TTVLKDHQGKRVASRKQELLELID--HFNID--VENPCVIMSQDKSREFLH 171 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~q~~~~~~l~ 171 (812)
|..|.|.|.+. .+++ ...+ ..+|..++.+..++...+. .+|++ .+...++++||.+..|+.
T Consensus 77 ----------g~~y~i~R~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~ 145 (895)
T PRK01156 77 ----------GHVYQIRRSIERRGKGSRREAYI-KKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLIS 145 (895)
T ss_pred ----------CEEEEEEEEEecCCCCCCceEEE-ecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHh
Confidence 35799999986 3321 2222 2267777655567777664 45654 334577899999999885
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003532 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALV 209 (812)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 209 (812)
. .|..+...+....++..+......+...+..+...+
T Consensus 146 ~-~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei 182 (895)
T PRK01156 146 G-DPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEI 182 (895)
T ss_pred C-CHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4 556777777666666665555555444444444433
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.5e-25 Score=250.09 Aligned_cols=186 Identities=27% Similarity=0.403 Sum_probs=133.9
Q ss_pred eeEeEEEEeecccccceEEE--eCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEE
Q 003532 20 GTITRVRLENFMCHSSLQIE--LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~--f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (812)
|+|.+|.|.||+||.+.+|. |++|+|+|+||||||||||||||+|||||..+... .....++++.|...+.|++.|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 89999999999999999999999999999988643 4566889999998899999999
Q ss_pred eCCCCCCCccccCCeEEEEEEEeCCcC----eEEEecCCCceeeccHHHHHHHH-hhcCCC--CCCCeeEeccchhhhhh
Q 003532 98 NRGEDAFKPEIFGDSIIIERRITESTS----TTVLKDHQGKRVASRKQELLELI-DHFNID--VENPCVIMSQDKSREFL 170 (812)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~r~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~q~~~~~~l 170 (812)
.+ |..|.|.|.+..+.+ ...+...+|..+.....++...+ ..+|++ .+..+++++||.+..|+
T Consensus 80 ~~----------g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 80 VN----------GKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred EC----------CEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 65 457999998772222 22234446766665555666544 445655 44458999999999999
Q ss_pred cCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003532 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 217 (812)
.. .+.++-..+.....+..+......+.............+...+.
T Consensus 150 ~~-~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 150 KS-KPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hc-CcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 44455555555544444444444444444444444444444433
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.97 E-value=1.3e-22 Score=233.53 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=48.2
Q ss_pred CeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCc
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~ 70 (812)
..+|++|.+.||++|.+.+|+|++|+++|+|+|||||||+|+||.++|++..
T Consensus 4 ~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred CceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 4689999999999999889999999999999999999999999999986553
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.97 E-value=4.9e-26 Score=250.13 Aligned_cols=198 Identities=15% Similarity=0.249 Sum_probs=134.9
Q ss_pred CeeEeEEEEeecccccc--eEEEeC-CceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhh-cCCceeEEEE
Q 003532 19 AGTITRVRLENFMCHSS--LQIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK-TGCSYAMVEV 94 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~--~~i~f~-~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~-~~~~~~~v~l 94 (812)
||+|++|.+.||++|++ .+|+|+ +|+|+|+||||+|||||++||.|||||.+....+ ...+++ .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~---~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIK---KGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcCC---HHHhhccCCCCcEEEEE
Confidence 89999999999999965 488998 4999999999999999999999999998754222 234553 3456789999
Q ss_pred EEEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceee--ccHHHHHHHHhh-cCCCCCCC--eeEeccchhhhh
Q 003532 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVA--SRKQELLELIDH-FNIDVENP--CVIMSQDKSREF 169 (812)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-~~~~~~~~--~~~~~q~~~~~~ 169 (812)
.|..+ |..|.|.|.+..+...++. +|..++ .+.+++...+.. +|++...+ .++++|+.+..|
T Consensus 78 ~f~~~----------~~~y~i~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 78 WFEYG----------EKEYYIKRGIKPNVFEIYC---NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEEC----------CEEEEEEEeccCCeEEEec---CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 99876 3578999977644322332 566543 234566655554 55554332 567899999988
Q ss_pred hcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003532 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (812)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 233 (812)
+.. .+.++...+.....+..+...-....+.+...+..+..+..++..+..++..++..+..+
T Consensus 145 ~~~-~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 145 MQL-SAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred hcC-ChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 776 445666666555555544444444455666666666666666666666666555554444
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=7.5e-23 Score=242.00 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=101.9
Q ss_pred eEeEEEEeeccccc-----ceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhc------CCce
Q 003532 21 TITRVRLENFMCHS-----SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT------GCSY 89 (812)
Q Consensus 21 ~i~~i~i~nf~~~~-----~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~------~~~~ 89 (812)
+|.+|.|.||+||+ .++|+|++|+++|+||||||||||++||.|||||..++..+|. .+++. +...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhh
Confidence 68999999999995 4689999999999999999999999999999999766533333 13322 2346
Q ss_pred eEEEEEEEeCCCCCCCccccCCeEEEEEEEe--CCcC--e------EEEecCCCceee--ccHHHHH-HHHhhcCCC--C
Q 003532 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--ESTS--T------TVLKDHQGKRVA--SRKQELL-ELIDHFNID--V 154 (812)
Q Consensus 90 ~~v~l~~~~~~~~~~~~~~~~~~~~i~r~~~--~~~~--~------~~~~~~~g~~~~--~~~~~~~-~~~~~~~~~--~ 154 (812)
+.|.+.|... .|..|.|.|.+. .+.+ . ......+|..++ ....++. .+...+|++ .
T Consensus 79 a~V~l~F~~~---------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~ 149 (1311)
T TIGR00606 79 AQIRLQFRDV---------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAV 149 (1311)
T ss_pred heeEEEEEcC---------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHH
Confidence 7899999654 245788888763 1111 0 011112465433 2334665 466667876 4
Q ss_pred CCCeeEeccchhhhhhcCCCchhHHHHHHhhh
Q 003532 155 ENPCVIMSQDKSREFLHSGNDKDKFKFFFKAT 186 (812)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 186 (812)
+..++|++||++.+++. .|..+-..|....
T Consensus 150 f~~vi~~~Qge~~~~~~--~~~~rk~~~d~if 179 (1311)
T TIGR00606 150 LNNVIFCHQEDSNWPLS--EGKALKQKFDEIF 179 (1311)
T ss_pred HhhceeeCCcccccccC--ChHHHHHHHHHHh
Confidence 55678999999975543 4444544444433
No 17
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.95 E-value=1.6e-20 Score=215.97 Aligned_cols=186 Identities=19% Similarity=0.293 Sum_probs=127.6
Q ss_pred eeEeEEEEeecccc-cceEEEeC------CceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccc-cchhhhhhcCCceeE
Q 003532 20 GTITRVRLENFMCH-SSLQIELG------EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA-ATLKDFIKTGCSYAM 91 (812)
Q Consensus 20 m~i~~i~i~nf~~~-~~~~i~f~------~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~-~~~~~~i~~~~~~~~ 91 (812)
|+|.+|.|.||++| +..+|+|. .|+++|+||||||||||+|||+|+|||.++...+. ..+.+++..|...++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 89999999999999 57889995 58999999999999999999999999998764333 345788888888999
Q ss_pred EEEEEEeCCCCCCCccccCCeEEEEEEEe------CCc---CeEEEec-CCCceeeccHHHHHH-HHhhcCCC--CCCCe
Q 003532 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT------EST---STTVLKD-HQGKRVASRKQELLE-LIDHFNID--VENPC 158 (812)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~r~~~------~~~---~~~~~~~-~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~ 158 (812)
|+++|..+| ..|.|.|... .|+ ..+.+.. .+|..+.....++.. +...+|++ .+...
T Consensus 81 v~~~F~~~~----------~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~ 150 (1047)
T PRK10246 81 AEVEFEVKG----------EAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS 150 (1047)
T ss_pred EEEEEEECC----------eEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhh
Confidence 999998764 3566765432 111 1122221 245555444445554 33344554 55558
Q ss_pred eEeccchhhhhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003532 159 VIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATI 216 (812)
Q Consensus 159 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 216 (812)
++++||.+..|+.. .+.++-.++....++..+...-..+.+........+..+..++
T Consensus 151 v~l~QG~f~~fl~a-~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 151 MLLSQGQFAAFLNA-KPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred eeeccccHHHHHhC-ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987 5567777777666555554444444444444444444444433
No 18
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.94 E-value=1.7e-18 Score=203.14 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHH-HHhcCCcC--C----cccccchhhhhhcCC-----
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALC-IAFGCRAK--G----TQRAATLKDFIKTGC----- 87 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~-~~l~~~~~--~----~~r~~~~~~~i~~~~----- 87 (812)
.++.++.|.||..|++.+|+|++|+++|+|+|||||||+||||. ++|.|+.. . ..++.++.+++..|.
T Consensus 2 w~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~ 81 (1353)
T TIGR02680 2 WRPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDE 81 (1353)
T ss_pred ceeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCC
Confidence 47899999999999999999999999999999999999999966 55666432 1 134556778887665
Q ss_pred ceeEEEEEEEe
Q 003532 88 SYAMVEVELKN 98 (812)
Q Consensus 88 ~~~~v~l~~~~ 98 (812)
..+++.++|..
T Consensus 82 ~~~y~~~e~~~ 92 (1353)
T TIGR02680 82 RVGYLWLEFGR 92 (1353)
T ss_pred cceeEEEEeec
Confidence 23445555544
No 19
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=7.3e-22 Score=229.35 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=131.9
Q ss_pred eeEeEEEEeeccccc-ceEEEeCC--ceEEEEcCCCCChhHHHHHHHHHhcCCcCCccccc-chhhhhhcCCceeEEEEE
Q 003532 20 GTITRVRLENFMCHS-SLQIELGE--WVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA-TLKDFIKTGCSYAMVEVE 95 (812)
Q Consensus 20 m~i~~i~i~nf~~~~-~~~i~f~~--g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~-~~~~~i~~~~~~~~v~l~ 95 (812)
|+|.+|+|.||++|. ..+|+|++ |+++|+||||||||||||||+|||||.++...+.. ...++...+...+.|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 899999999999995 55899988 99999999999999999999999999887533322 334455556677899999
Q ss_pred EEeCCCCCCCccccCCeEEEEEEEe------CCcCeE---EE-ecCCCceeeccHHHHHH-HHhhcCCCCCCC--eeEec
Q 003532 96 LKNRGEDAFKPEIFGDSIIIERRIT------ESTSTT---VL-KDHQGKRVASRKQELLE-LIDHFNIDVENP--CVIMS 162 (812)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~r~~~------~~~~~~---~~-~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~ 162 (812)
|..+| ..|.|.|.+. .|...+ .+ ...+|..+..+..++.. +...+|++...+ .++++
T Consensus 81 F~~~g----------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~ 150 (1042)
T TIGR00618 81 FSLGT----------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLP 150 (1042)
T ss_pred EEECC----------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeec
Confidence 98764 3466665443 121111 11 12345555555566665 444567775544 68999
Q ss_pred cchhhhhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003532 163 QDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (812)
Q Consensus 163 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 217 (812)
||.+..|+.. .+.++...+....++..+......+.+........+..+..++.
T Consensus 151 Qg~~~~fl~a-~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 151 QGEFAQFLKA-KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred ccchHHHHhC-CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999987 57788888877777766666555566666666666666555554
No 20
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.92 E-value=1.8e-21 Score=209.57 Aligned_cols=191 Identities=22% Similarity=0.314 Sum_probs=135.4
Q ss_pred eEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCC
Q 003532 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (812)
Q Consensus 21 ~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (812)
+|.+|.|.||+.|+..+|+|+||+|+|+||||||||+|++||.|++|++.. .++|+.|+..+.|++.|...+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCCeEEEEEEEccCC
Confidence 478999999999999999999999999999999999999999999998743 578999999999999998654
Q ss_pred CCC----C----Ccccc--CCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhh
Q 003532 101 EDA----F----KPEIF--GDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (812)
Q Consensus 101 ~~~----~----~~~~~--~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (812)
... + ..+.. ++.+.|+|.+. .|++.|+| ||+++ +...+.++...+ +.+.+|.....+
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~i---Ng~~v--~~~~l~~l~~~l-------i~i~gQ~~~~~l 140 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYL---NGKPV--SASSLLEFTSEL-------LDLHGQHDQQLL 140 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEE---CCEEc--cHHHHHHHhcCe-------EEEECchHHHHh
Confidence 321 0 01111 35789999998 78999999 68777 456777776433 334455543333
Q ss_pred hcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 003532 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (812)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 234 (812)
+ .+.....++..-..+..+...+..+...+..+...+.++.........+++.++.+++.++
T Consensus 141 ~---~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 141 F---RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred c---CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3 2233333333223344555566666666677777777776666666666666666666554
No 21
>PRK10869 recombination and repair protein; Provisional
Probab=99.92 E-value=2e-21 Score=206.16 Aligned_cols=190 Identities=18% Similarity=0.288 Sum_probs=126.8
Q ss_pred eEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCC
Q 003532 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (812)
Q Consensus 21 ~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (812)
+|.+|.|.||+.|+..+|+|+||+|+|+||||||||+|++||.|+||+++. .++|+.|...+.|++.|...+
T Consensus 1 ML~~L~I~nf~~i~~~~i~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir~g~~~a~Ve~~F~~~~ 72 (553)
T PRK10869 1 MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVRPGATRADLCARFSLKD 72 (553)
T ss_pred CccEEEEcccccceeeEEecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------cccccCCCCcEEEEEEEecCC
Confidence 378999999999999999999999999999999999999999999998654 578999999999999998644
Q ss_pred CCC-------CCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcC
Q 003532 101 EDA-------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (812)
Q Consensus 101 ~~~-------~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (812)
... +..+ .+..+.|+|.+. .|++.|++ ||+.+ +...+.++...+ +++ .+|.....++.
T Consensus 73 ~~~~~~~l~~~~~~-~~~~~~i~R~i~~~g~s~~~I---Ng~~v--~~~~l~~l~~~l-i~i------hgQ~~~~~ll~- 138 (553)
T PRK10869 73 TPAALRWLEDNQLE-DGNECLLRRVISSDGRSRGFI---NGTPV--PLSQLRELGQLL-IQI------HGQHAHQLLLK- 138 (553)
T ss_pred ChHHHHHHHhcCCC-CCCeEEEEEEEecCCcceEEE---CCeec--cHHHHHHHHHhh-hhe------eCcChHHHhcC-
Confidence 210 0011 235789999988 88999999 57777 556888887766 443 33433322222
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 003532 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (812)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 234 (812)
+.....++..-.....+...+......+..+...+.++........++++-++-+++.++
T Consensus 139 --~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 139 --PEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 112222211111112333444455555555555555555555555555555555555443
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.90 E-value=1.4e-19 Score=198.87 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=96.2
Q ss_pred eeEeEEEEeeccccc-ceEEEeCC----ceEEEEcCCCCChhHHHHHHHHHhcCCcCC-ccccc-ch----hhhhhcC--
Q 003532 20 GTITRVRLENFMCHS-SLQIELGE----WVNFITGQNGSGKSAILTALCIAFGCRAKG-TQRAA-TL----KDFIKTG-- 86 (812)
Q Consensus 20 m~i~~i~i~nf~~~~-~~~i~f~~----g~~~I~G~NgsGKStl~dai~~~l~~~~~~-~~r~~-~~----~~~i~~~-- 86 (812)
|+|++|.|.||+.|. ...|+|++ ++++|+||||+|||||++||.|||||..+. ..|+. .. .++++.+
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999994 45777753 599999999999999999999999998753 22332 12 2334332
Q ss_pred -CceeEEEEEEEeCCCCCCCccccCCeEEEEEEEe-C---CcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEe
Q 003532 87 -CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E---STSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIM 161 (812)
Q Consensus 87 -~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~r~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (812)
...++|+++|.+.+.+ ....|+|.|.|. . .+..+.+.. +|.........+.+++..+.......+|||
T Consensus 81 ~~~~~~V~l~f~~~~~~------~~~~y~i~R~w~~~~k~~~~~l~v~~-~~~~~~~~~~~~~~~i~~ilp~~~~~~FfF 153 (650)
T TIGR03185 81 KTNPASITLTFSVVEGG------KRHEYTLVRSWHINNKDVKEKLTVYK-DDEEDDSLNDIWDEFINELLPLELADLFFF 153 (650)
T ss_pred CCCCeEEEEEEEEccCC------ceEEEEEEEEecCCCCCCCCcEEEEE-CCcccchhhHHHHHHHHHhCCHhHHHHhcc
Confidence 3467999999865322 123688999986 2 123333322 331111112345566666544444458899
Q ss_pred ccchhhhhhcC
Q 003532 162 SQDKSREFLHS 172 (812)
Q Consensus 162 ~q~~~~~~l~~ 172 (812)
+++.+..+...
T Consensus 154 DGE~I~~la~~ 164 (650)
T TIGR03185 154 DGEKIEALANP 164 (650)
T ss_pred cHHHHHHHhcc
Confidence 99998887664
No 23
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.87 E-value=7e-16 Score=168.76 Aligned_cols=167 Identities=21% Similarity=0.300 Sum_probs=117.9
Q ss_pred CeeEeEEEEeecccccc---eEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCC------ce
Q 003532 19 AGTITRVRLENFMCHSS---LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SY 89 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~---~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~ 89 (812)
|..|.++.|.|+|||++ .+|+|..++|+|+||||+|||||++++.|+.+|..|++.++ ..|||... ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 56799999999999953 67999888999999999999999999999999988776665 34554332 24
Q ss_pred eEEEEEEEeCCCCCCCccccCCeEEEEEEEe--CCc----------CeEEEecCCCceeeccHHHHHH-HHhhcCCC--C
Q 003532 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--EST----------STTVLKDHQGKRVASRKQELLE-LIDHFNID--V 154 (812)
Q Consensus 90 ~~v~l~~~~~~~~~~~~~~~~~~~~i~r~~~--~~~----------~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~ 154 (812)
|.|.+.|.+.+ |..+++.|++. .+. .-+.+.+..+..++....+++. +...+|+. +
T Consensus 78 AqvkL~f~~~~---------G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 78 AQVKLAFTDVN---------GETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred heeeeeeecCC---------CcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 78999998874 56788888775 221 1133333344555556667774 55666765 4
Q ss_pred CCCeeEeccchhhhhhcCCCc-hhHHHHHHhhhhHHHHHHHHHH
Q 003532 155 ENPCVIMSQDKSREFLHSGND-KDKFKFFFKATLLQQVNDLLQS 197 (812)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 197 (812)
.+++.|++|+...|++...+. +.+|+.++.++.+....+.+..
T Consensus 149 l~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~KAld~~kk 192 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYTKALDSLKK 192 (1294)
T ss_pred HhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999998876433 4456666666655444443333
No 24
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=6.1e-15 Score=148.38 Aligned_cols=61 Identities=26% Similarity=0.443 Sum_probs=51.7
Q ss_pred cccCCCCCCCCCCCeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHh
Q 003532 6 FSSESGYGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 6 ~~~~~~~~~~~~~~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
|.|+-+-|+-+-.-.++.+|.+.|||.|..+.|+..-+-.+++|..|||||||+|||..+|
T Consensus 1 ~TS~~~L~~i~~~~FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavL 61 (1104)
T COG4913 1 MTSEQALDPIHPGQFRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVL 61 (1104)
T ss_pred CcccccCCCCCCCceeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHh
Confidence 3466666666655689999999999999988887765558999999999999999999887
No 25
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.86 E-value=8.2e-18 Score=170.41 Aligned_cols=189 Identities=23% Similarity=0.361 Sum_probs=126.2
Q ss_pred eEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCC
Q 003532 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (812)
Q Consensus 21 ~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (812)
+|.+|.|.||.-+...+|+|.+|+|||+|..|+|||-|+|||.+|||++.. .++|++|...+.|+..|..+
T Consensus 1 ML~~LsIknfaiIe~L~leF~~GltVlTGETGAGKSIiidAl~lllG~ra~--------~~~VR~G~~~a~v~a~F~~~- 71 (557)
T COG0497 1 MLLELSIKNFAIIEELELEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD--------ASLVRHGAKRAEVEAIFDLD- 71 (557)
T ss_pred CCcEEeeeheeeeeeeeeeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC--------cchhcCCCceeEEEEEecCC-
Confidence 367899999999999999999999999999999999999999999999976 57999999999999999987
Q ss_pred CC----CCC---ccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcC
Q 003532 101 ED----AFK---PEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (812)
Q Consensus 101 ~~----~~~---~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (812)
.. |+. .+ +.+.+.++|.++ .|++.++| ||+.|+ ...+.++...+ ++ +.+|......+..
T Consensus 72 ~~~~~~~L~e~gie-~~~~iilrR~i~~~GrSr~~I---Ng~~Vs--~~~L~~l~~~L-i~------IHGQh~~q~Ll~~ 138 (557)
T COG0497 72 NPPARAWLEENGIE-DDEEVILRRVISADGRSRAFI---NGQPVS--LAQLKELGQLL-ID------IHGQHEHQSLLKP 138 (557)
T ss_pred chHHHHHHHHcCCC-CcCcEEEEEEEcCCCceeEEE---CCEEee--HHHHHHHHHhh-he------eeccchHHHhcCh
Confidence 21 111 11 123889999999 88999999 688884 46777777666 33 3445555555544
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003532 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (812)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 233 (812)
......++.|........ ..+.............+..+.........+++-++-+++++
T Consensus 139 ~~~r~lLD~f~~~~~~~~--~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El 197 (557)
T COG0497 139 ELQRQLLDAFAGLEELAQ--EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEEL 197 (557)
T ss_pred HHHHHHHHHhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322221111 22333344444444444444444444444444444444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.85 E-value=6.9e-14 Score=164.19 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=31.8
Q ss_pred EEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcc
Q 003532 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQ 74 (812)
Q Consensus 37 ~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~ 74 (812)
+|+++ |.|-|+|.||+|||||+.+|.|.+|..|....
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv 49 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLV 49 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccC
Confidence 56666 78899999999999999999998888877543
No 27
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.82 E-value=4.3e-14 Score=165.97 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=55.9
Q ss_pred ccchhhhhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003532 162 SQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQ 241 (812)
Q Consensus 162 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 241 (812)
.|...+.+++..++...|...... ....+..+.+++..+...+.+++.++..++.+.+..........++..+..
T Consensus 153 kp~err~iiEEaaGv~~y~~r~~e-----a~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~ 227 (1163)
T COG1196 153 KPEERRKLIEEAAGVSKYKERKEE-----AERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227 (1163)
T ss_pred CHHHHHHHHHHHhchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888888888755544 336777888888888888888888888888888877777665544444443
Q ss_pred HHH
Q 003532 242 DLQ 244 (812)
Q Consensus 242 ~~~ 244 (812)
.+.
T Consensus 228 ~~~ 230 (1163)
T COG1196 228 ALL 230 (1163)
T ss_pred HHH
Confidence 333
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9e-14 Score=148.43 Aligned_cols=242 Identities=16% Similarity=0.248 Sum_probs=125.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 271 KLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMV----EKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYM 346 (812)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (812)
.++...+.....+..+..++..+..........+.... .+...+..++..++.++..+..++..+..++.-.++++
T Consensus 430 e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred HHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433333333222 22233445566666666666666667777766667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 347 QKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIED 426 (812)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (812)
..+..........+..+...+ ........+....+..+...+...+.++.+...++..+......+...+..++.++.+
T Consensus 510 ~~L~~~~~~~~~~~e~lk~~L-~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 510 DILLSRHETGLKKVEELKGKL-LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555 2333333444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH------HHHHHhc--c---CCccccCC----------------------------------------cc
Q 003532 427 YDKKCREIRSE------IRELQQH--Q---TNKVTAFG----------------------------------------GD 455 (812)
Q Consensus 427 ~~~~~~~l~~~------l~~l~~~--~---~~~~~~~~----------------------------------------~~ 455 (812)
+...+...... +.++... . .+++.+++ |+
T Consensus 589 ~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 589 AKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGR 668 (1293)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence 55544433222 1122111 1 12222222 01
Q ss_pred cHHHHHHHHHhh----cCCCcCCCcccccccEEecCCCccHHHHHHHHhcccceeeecChhhHHHH
Q 003532 456 RVISLLRAIERH----HHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLL 517 (812)
Q Consensus 456 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 517 (812)
.++..+..+... .....+.+++.+.+++.+.+ +.+++|+..+++.+ +|+++.+.|..+
T Consensus 669 aTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d-~~~r~aFYfaLrdt---LV~d~LeQAtRi 730 (1293)
T KOG0996|consen 669 ATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKD-EKFRPAFYFALRDT---LVADNLEQATRI 730 (1293)
T ss_pred eeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCC-HHHHHHHHHHHhhh---hhhcCHHHHHHH
Confidence 111111111100 00001224667889999988 99999999999876 999999887543
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.81 E-value=2e-13 Score=146.12 Aligned_cols=252 Identities=16% Similarity=0.275 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 003532 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (812)
Q Consensus 186 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (812)
..+..+...+....+.+......+..+++++...+..+..+..-....+.+..+..++.|...-.....+......+...
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~ 293 (1074)
T KOG0250|consen 214 ESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKK 293 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777778888888888888888888888888888777777788888899999988877777888888888888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (812)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (812)
+.....+...++.....+..+...+.+.++.+..+..+...-..++..+......+..+...++.++......+...+..
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~ 373 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE 373 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 346 MQKMVNRVKGLEQQV-HDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEI 424 (812)
Q Consensus 346 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (812)
+..+.+.|..++.+. ..+..++ ......++.+..++..++..+..+..+...+..++.....+.......+..++..+
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~-~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSEL-EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 777777777777666 3333333 45556667777788888888888888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 003532 425 EDYDKKCREIRSEI 438 (812)
Q Consensus 425 ~~~~~~~~~l~~~l 438 (812)
......+..+....
T Consensus 453 ~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 453 ENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777777665543
No 30
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.7e-13 Score=140.35 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=79.6
Q ss_pred eeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcCCcCC--cccccchhhhhhcCCce-eEEEEE
Q 003532 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKG--TQRAATLKDFIKTGCSY-AMVEVE 95 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~~~~~--~~r~~~~~~~i~~~~~~-~~v~l~ 95 (812)
|+|.+|.|+|||.|...+|+|.+. |++|+|+|.|||||||-+|..+|||.|.+ .++-.+. .|..+ +.+.+.
T Consensus 1 MrI~sl~I~gYGKFs~r~~df~~s~f~vI~G~NEAGKSTl~sFI~smlFGfP~~sk~~~~eP~-----~Gg~yGG~L~~~ 75 (984)
T COG4717 1 MRIQSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSKYPRLEPK-----QGGQYGGRLVAI 75 (984)
T ss_pred CceeEEEeeeccchhhhhhhccCCceEEEecCccccHHHHHHHHHHHHcCCCCCCCCCCCCcc-----cCCCcccEEEEe
Confidence 899999999999999999999875 99999999999999999999999998853 2221121 22222 233322
Q ss_pred EEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhc
Q 003532 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHF 150 (812)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 150 (812)
++ .|..|.|.|..++..+...+..|+|.+-+ .+.+..++...
T Consensus 76 --~~---------~~~~~~IER~kgsa~gdvkvylpdG~v~~--~~~L~k~lg~i 117 (984)
T COG4717 76 --DR---------EGGAYRIERNKGSAIGDVKVYLPDGNVGS--KTLLSKLLGSI 117 (984)
T ss_pred --cC---------CCceEEEEeccCcccCCceEECCCCCccc--hHHHHHHHhhh
Confidence 22 23579999987755555566667786653 33455555443
No 31
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=2.6e-18 Score=166.28 Aligned_cols=148 Identities=27% Similarity=0.411 Sum_probs=112.6
Q ss_pred eeEeEEEEeecccccceEE--EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcC----CceeEEE
Q 003532 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----CSYAMVE 93 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i--~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~----~~~~~v~ 93 (812)
|+|++|.+.||++|...++ +|+||+|+|+||||||||||++||.|+|+.......|.....++++.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7999999999999988876 899999999999999999999999999987644445655555677643 3467999
Q ss_pred EEEEeCCCCCCCcc-ccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhc
Q 003532 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (812)
Q Consensus 94 l~~~~~~~~~~~~~-~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (812)
+.|.+.+...+... ...+.++|.|.+. .....|++ +|+.. ....+.+++..+|+..+++++++.||++..++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~i---n~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLI---NGHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEE---CCEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 99988643311110 1134789999887 44455545 34333 346888999999998888899999999998876
Q ss_pred C
Q 003532 172 S 172 (812)
Q Consensus 172 ~ 172 (812)
.
T Consensus 156 ~ 156 (251)
T cd03273 156 M 156 (251)
T ss_pred h
Confidence 5
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=8.4e-13 Score=160.34 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=23.3
Q ss_pred ccEEecCCCccHHHHHHHHhcccceeeecChhhHHHH
Q 003532 481 SHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLL 517 (812)
Q Consensus 481 ~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 517 (812)
+++.+ + +.+.+++.+++|.+ ++|++...+..+
T Consensus 604 ~~i~~-~-~~~~~~~~~~lg~~---~v~~~l~~a~~~ 635 (1164)
T TIGR02169 604 DLVEF-D-PKYEPAFKYVFGDT---LVVEDIEAARRL 635 (1164)
T ss_pred HHccC-c-HHHHHHHHHHCCCe---EEEcCHHHHHHH
Confidence 34444 3 67888899998876 899988877554
No 33
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=1.6e-17 Score=160.01 Aligned_cols=138 Identities=27% Similarity=0.348 Sum_probs=109.8
Q ss_pred EeEEEEeeccccc-ceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc------eeEEEE
Q 003532 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (812)
Q Consensus 22 i~~i~i~nf~~~~-~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~------~~~v~l 94 (812)
|++|.+.||++|. ..+|+|.+++++|+||||||||||++||.|++++.+.. .|.....++|+.+.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~-~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSH-LRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-ccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999996 56799999999999999999999999999999876433 465566678877764 789999
Q ss_pred EEEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcCCC
Q 003532 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (812)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 174 (812)
.|.+.+ +....+.|.+..+...|.+ +|+.+ +..++.+++..+|++++.+.+++.|+++..+....+
T Consensus 80 ~f~~~~---------~~~~~~~~~~~~~~~~~~i---ngk~~--s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDD---------GEEKTFRRIITGGSSSYRI---NGKVV--SLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCC---------CcEEEEEEEEECCceEEEE---CCEEe--cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 997653 2245566655566666777 46655 467888999999999988888899999999887654
No 34
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.75 E-value=2.5e-17 Score=156.86 Aligned_cols=127 Identities=35% Similarity=0.489 Sum_probs=97.0
Q ss_pred eEeEEEEeecccc--cceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhc-----CCceeEEE
Q 003532 21 TITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVE 93 (812)
Q Consensus 21 ~i~~i~i~nf~~~--~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~-----~~~~~~v~ 93 (812)
+|.+|+|.||++| ...+++|+|++|+|+||||+|||||+|||.|||++.+.+..|.....++|+. ....+.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 5899999999999 6788999999999999999999999999999999987766788888888876 45678999
Q ss_pred EEEEeCCCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCC
Q 003532 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVE 155 (812)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 155 (812)
+.|.+.+.. .......+.|.|.+. .+.+.|++ +|..+ +..++..++...++...
T Consensus 81 ~~~~~~~~~---~~~~~~~~~i~r~~~~~~~~~~~i---n~~~~--~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEE---FELDKKEIEISRRIDRKGRSEYKI---NGKKV--RLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEE---SSSSSSEEEEEEEEETTS-EEEEE---TTEEE---HHHHHHHHHCTTTTTT
T ss_pred ccccccccc---cccccccccccccccccccccccc---ccccc--ccccccccccccccccc
Confidence 999776432 112345689999888 66678888 56666 45778888877776653
No 35
>PRK14079 recF recombination protein F; Provisional
Probab=99.74 E-value=3.6e-16 Score=157.24 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=93.4
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.+.||++|...+++|+||+|+|+||||+|||||++||.|++||.. |.....++|+.|...++|.+.|..+
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~----r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGEL----PNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCCC----CCCcHHhheecCCCcEEEEEEEEeC
Confidence 899999999999999999999999999999999999999999999999833 4445578999999999999999765
Q ss_pred CCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhh
Q 003532 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (812)
+ ..+.+...+..+++.+++ +|+.+ +..++..++ +.+++.|+...-+.
T Consensus 77 ~----------~~~~~~~~~~~~~~~~~i---ng~~~--~~~~l~~~~---------~~v~~~p~d~~li~ 123 (349)
T PRK14079 77 G----------GLSRLEVGLGPGRRELKL---DGVRV--SLRELARLP---------GAVLIRPEDLELVL 123 (349)
T ss_pred C----------CeEEEEEEEEcCceEEEE---CCeec--CHHHHHhhh---------cEEEEecCchHhhh
Confidence 3 123444444444566778 57666 334444433 34556777766544
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.4e-13 Score=142.66 Aligned_cols=219 Identities=14% Similarity=0.208 Sum_probs=113.0
Q ss_pred hhhcC---CCchhHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH------
Q 003532 168 EFLHS---GNDKDKFKFFFKATL-------LQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR------ 231 (812)
Q Consensus 168 ~~l~~---~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~------ 231 (812)
.|+++ ..+++++..++.++. ...+...+.+....+..+.+.+......+..++.++++++...+
T Consensus 216 ~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~ 295 (1174)
T KOG0933|consen 216 QYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGE 295 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 44444 345566555544433 34455566666666666666666666666666666666665332
Q ss_pred --HHH-HHHHH-------HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 232 --NME-HVEEI-------TQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKK 301 (812)
Q Consensus 232 --~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (812)
.++ +...+ ...+.+....+ ......++.+...+.+....+..-...+.........+........
T Consensus 296 ~~~L~~~~~~~~~~~tr~~t~l~~~~~tl-----~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s 370 (1174)
T KOG0933|consen 296 VKALEDKLDSLQNEITREETSLNLKKETL-----NGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDS 370 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 121 12222 22233333333 2444455555555555555555555555554444444444444444
Q ss_pred HHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003532 302 AEIAVMVEKTSEVR-------RRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAE 374 (812)
Q Consensus 302 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (812)
..+...+..+..+. ..-..++.++..++..+..+...+....-.+..+..++...+-+......+. ......
T Consensus 371 ~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~-~~~~~~ 449 (1174)
T KOG0933|consen 371 KLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEY-VKDIEE 449 (1174)
T ss_pred HHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHH-HHHHHH
Confidence 44444444443332 2344566666666666666666666666666667777666666666655443 122222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003532 375 ESEIEAKLKELQCEIDAA 392 (812)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~ 392 (812)
+.....+++.++.++..+
T Consensus 450 ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 450 LDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444333
No 37
>PRK00064 recF recombination protein F; Reviewed
Probab=99.73 E-value=5e-16 Score=157.23 Aligned_cols=101 Identities=26% Similarity=0.415 Sum_probs=85.8
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||++|...+++|+||+|+|+||||+|||||++||.++++|.+. |.....++|+.|...+.|.+.|..+
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~~ 77 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEKG 77 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999887653 5556688999999999999999754
Q ss_pred CCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCcee
Q 003532 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~ 136 (812)
+ ..+.|.+.+. .+++.+.+ +|+.+
T Consensus 78 ~----------~~~~i~~~~~~~~~~~~~i---ng~~~ 102 (361)
T PRK00064 78 G----------RELPLGLEIDKKGGRKVRI---NGEPQ 102 (361)
T ss_pred C----------cEEEEEEEEEcCCceEEEE---CCccc
Confidence 2 3567888776 45577888 57655
No 38
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.72 E-value=1e-17 Score=115.88 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=45.6
Q ss_pred EeEEEEeecccccceEEEeCC-c-eEEEEcCCCCChhHHHHHHHHHhcCCc
Q 003532 22 ITRVRLENFMCHSSLQIELGE-W-VNFITGQNGSGKSAILTALCIAFGCRA 70 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~-g-~~~I~G~NgsGKStl~dai~~~l~~~~ 70 (812)
+.+|.+.||++|..++|+|++ | +++|+||||||||||||||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 468999999999889999986 4 899999999999999999999999877
No 39
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.6e-16 Score=152.46 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=84.4
Q ss_pred EeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCCC
Q 003532 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~ 101 (812)
|.+|.|.||++|.+.+|+|++|+|+|+||||||||||++||.|++|+.+ .|.....++++.|...+.|++.|.+++
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~---~r~~~~~~~i~~~~~~~~v~~~f~~~~- 76 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKS---HRTSRDKELIRWGAEEAKISAVLERQG- 76 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCC---CCCCCHHHHHhcCCCCEEEEEEEEeCC-
Confidence 5789999999999999999999999999999999999999999999865 344456789999999999999998753
Q ss_pred CCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceee
Q 003532 102 DAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137 (812)
Q Consensus 102 ~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~ 137 (812)
..+.+.|.+. .+++.|++ +|..++
T Consensus 77 ---------~~~~i~~~~~~~~~~~~~i---ng~~~~ 101 (270)
T cd03242 77 ---------GELALELTIRSGGGRKARL---NGIKVR 101 (270)
T ss_pred ---------CeEEEEEEEEcCCceEEEE---CCeecc
Confidence 3478888876 56778888 465553
No 40
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.3e-16 Score=156.09 Aligned_cols=113 Identities=30% Similarity=0.441 Sum_probs=91.8
Q ss_pred EeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCCC
Q 003532 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~ 101 (812)
|.+|.|.||++|...+|+|+||+|+|+||||||||||++||.|++|+.+. .++++.|...+.|.+.|...+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCCeEEEEEEEecCCc
Confidence 57899999999999999999999999999999999999999999998743 5788889888999999987543
Q ss_pred CC------CCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHH
Q 003532 102 DA------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (812)
Q Consensus 102 ~~------~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (812)
.. +....++.++.|+|.+. .+++.|++ +|+.+ +...+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~I---ng~~v--sl~~l~~i~ 120 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFI---NGQSV--TLKLLRELG 120 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEE---CCEEE--CHHHHHHHH
Confidence 21 00012346899999998 78899999 57766 456676665
No 41
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.70 E-value=2.9e-10 Score=115.62 Aligned_cols=48 Identities=29% Similarity=0.461 Sum_probs=43.7
Q ss_pred CeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHh
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
.+++.++.+.||.+|-..+|+++.-+|.+.|.||+||||.|.|+..+|
T Consensus 4 RGKfrSLTliNWNGFFARTFDlDeLVTTLSGGNGAGKSTTMA~FvTAL 51 (1480)
T COG3096 4 RGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1480)
T ss_pred ccccceeeEeeccchhhhhccHHHHHHhccCCCCCcccchHHHHHHHH
Confidence 468899999999999888999998899999999999999999987665
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.3e-10 Score=119.06 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=29.5
Q ss_pred CccHHHHHHHHhcccceeeecChhhHHHHHHHHHHhCcCCcceE
Q 003532 489 DTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQII 532 (812)
Q Consensus 489 ~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (812)
|.|.+|+..+||.+ ++|.+...+ ..+++.+.+.+++..
T Consensus 608 p~fdka~k~Vfgkt---ivcrdl~qa---~~~ak~~~ln~ITl~ 645 (1200)
T KOG0964|consen 608 PQFDKALKHVFGKT---IVCRDLEQA---LRLAKKHELNCITLS 645 (1200)
T ss_pred hhhHHHHHHHhCce---EEeccHHHH---HHHHHhcCCCeEEec
Confidence 78999999999987 999999887 445666666655543
No 43
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=5.2e-16 Score=144.31 Aligned_cols=79 Identities=38% Similarity=0.698 Sum_probs=72.0
Q ss_pred eEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 21 ~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
.|.+|+|.||++|+..+|+|++|+|+|+||||+|||||++||.++||+.+....|.....++++.|...+.|++.|.+.
T Consensus 2 ~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 2 SIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred eeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 5899999999999988999999999999999999999999999999998865556667788999999999999999775
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.65 E-value=5.9e-10 Score=136.22 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCcccccccEEecCCCccHHHHHHHHhcccceeeecChhhHHHHHHHH
Q 003532 474 PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCA 521 (812)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~ 521 (812)
+++|.+.+++.+ + +.|..++..++|+.+..++|++...+..+..++
T Consensus 520 ~~~g~~~~li~~-~-~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~l 565 (1179)
T TIGR02168 520 GILGVLSELISV-D-EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565 (1179)
T ss_pred CCccchhceeee-C-hhHHHHHHHHHHHHhcCeEECCHHHHHHHHHHh
Confidence 467777788877 4 689999999998876668888777655433333
No 45
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=5.8e-14 Score=141.65 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=70.4
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||+.|...+++|+||+|+|+||||+|||||++||.++++|.+. |.....++|+.|.+.+.|.+.|..+
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999998887653 5555678999999999999999765
Q ss_pred C
Q 003532 100 G 100 (812)
Q Consensus 100 ~ 100 (812)
+
T Consensus 78 ~ 78 (365)
T TIGR00611 78 D 78 (365)
T ss_pred C
Confidence 3
No 46
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=3.4e-15 Score=144.72 Aligned_cols=142 Identities=23% Similarity=0.355 Sum_probs=102.5
Q ss_pred EeEEEEeecccccceEE--EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc----eeEEEEE
Q 003532 22 ITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVEVE 95 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i--~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~v~l~ 95 (812)
|++|+|.||++|++..+ +|++++|+|+||||||||||++||.|+|+...+. .|.....++++.|.. .++|++.
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999977666 7899999999999999999999999999876554 454444577766553 4788888
Q ss_pred EEeCCCCCCCccccCCeEEEEEEEeCCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhhhcC
Q 003532 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (812)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (812)
|.+.+.. +. .....+.+.|.+......+.++ +... +..++..++..+|+...++.+.++++.+..++..
T Consensus 80 ~~~~~~~-~~--~~~~~~~i~r~ig~~~~~~~l~---~~~~--t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNR-FP--IDKEEVRLRRTIGLKKDEYFLD---KKNV--TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCc-cC--CCCCEEEEEEEEECCCCEEEEC---CeEc--CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 8664321 11 1234688888887555566663 3333 4467888888888877666666777776655433
No 47
>PF13514 AAA_27: AAA domain
Probab=99.63 E-value=4.7e-09 Score=123.80 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=65.5
Q ss_pred EEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCCCCCCCccccCCeEEEEEEEeCCcCeE
Q 003532 47 ITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTT 126 (812)
Q Consensus 47 I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~ 126 (812)
|||||.|||||+|.||..+|||.|.... .++++. .+...+-..+.+. .|..+.|.|..+.++
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~r~~-----~~f~~p-~~~~r~Gg~L~~~---------~g~~~~i~R~k~~~~--- 62 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPTRSP-----YNFYHP-KNGLRYGGRLEDP---------DGGELEIERRKGRKG--- 62 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCC-----cccCCC-CCCCCceeEEEec---------CCceEEEeecCCCCC---
Confidence 7999999999999999999999986421 123321 1111122222222 245789999765333
Q ss_pred EEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhhhh
Q 003532 127 VLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (812)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (812)
.+.+++|.++ ....+..++.+++-..+...|.|+.+.+..+
T Consensus 63 tl~~~~g~~~--~e~~L~~~Lgg~dr~~f~~iF~~d~~~L~~g 103 (1111)
T PF13514_consen 63 TLLDPDGQPL--PEDWLAALLGGLDRETFEAIFSFDHEELREG 103 (1111)
T ss_pred ceECCCCCCC--CHHHHHHHHcCCCHHHHHHHHcCCHHHHHHH
Confidence 5566788866 4567778877665555555677776665554
No 48
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.61 E-value=6.3e-14 Score=135.76 Aligned_cols=122 Identities=24% Similarity=0.410 Sum_probs=92.4
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.+.|||.|...+++|+||+|+++|+||+|||+|++||.|+-.|++ .|.....++|+.++..+.|...+...
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS---~Rt~~~~~lir~~~~~~~i~~~v~~~ 77 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRS---HRTSRDKELIRTGADEAEISARVQRK 77 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccC---ccccchhHHHhcCCccEEEEEEEeec
Confidence 899999999999999999999999999999999999999999999977776 35556689999999999999998876
Q ss_pred CCCCCCccccCCeEEEEEEEe-CCcCeEEEecCCCceeeccHHHHHHHHhhcCCCCCCCeeEeccchhh
Q 003532 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSR 167 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 167 (812)
+ ....+.-.+. .|+....++ |.... .+.+++..+ +++++.|+...
T Consensus 78 ~----------~~~~~~~~~~~~g~~~vrin---g~~~~----~~~el~g~l------~~vlf~Pedl~ 123 (363)
T COG1195 78 G----------REGTLGLQISKKGRRRVRIN---GTKAR----KLAELAGHL------NVVLFTPEDLG 123 (363)
T ss_pred c----------ceeeeEEEeccCcceEEEEC---Ccccc----cHHHHhhhC------ceEEecccccc
Confidence 3 2344444444 455556774 44332 344555555 34555555544
No 49
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.61 E-value=1.2e-15 Score=137.35 Aligned_cols=78 Identities=33% Similarity=0.501 Sum_probs=67.4
Q ss_pred EeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccch---hhhhhcCCceeEEEEEEE
Q 003532 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL---KDFIKTGCSYAMVEVELK 97 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~---~~~i~~~~~~~~v~l~~~ 97 (812)
|++|++.||++|...++.|.++ +|+|+||||+|||||++||.|++||.+....+.... .++++.|...++|+++|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999888887666 999999999999999999999999988765555543 667888899999999997
Q ss_pred eC
Q 003532 98 NR 99 (812)
Q Consensus 98 ~~ 99 (812)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 65
No 50
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=2.8e-15 Score=137.99 Aligned_cols=79 Identities=59% Similarity=0.896 Sum_probs=72.2
Q ss_pred EeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeCC
Q 003532 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (812)
|.+|+|.||++|...+|+|++|+|+|+||||+|||||++||.+++++......|+..+.++++.|...+.|.+.|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 5789999999999999999999999999999999999999999999987766677777899999988999999998864
No 51
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=6.7e-14 Score=129.76 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=72.7
Q ss_pred EeEEEEeecccc-cceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCccc-ccchhhhhhcCCceeEEEEEEEeC
Q 003532 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR-AATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 22 i~~i~i~nf~~~-~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r-~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|++|.+.||++| ...+++|++|+++|+||||||||||++||.|+++|...+... .......+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 578999999996 778999999999999999999999999999999887754221 112356777788889999999876
Q ss_pred CCCCCCccccCCeEEEEEEEe
Q 003532 100 GEDAFKPEIFGDSIIIERRIT 120 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~r~~~ 120 (812)
. +..|.+.|.+.
T Consensus 81 ~---------~~~~~v~r~~~ 92 (204)
T cd03240 81 N---------GKKYTITRSLA 92 (204)
T ss_pred C---------CCEEEEEEEhh
Confidence 2 35678888664
No 52
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.52 E-value=4.2e-14 Score=132.95 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=72.3
Q ss_pred eeEeEEEEeecccc-cceEEEeCCc----eEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEE
Q 003532 20 GTITRVRLENFMCH-SSLQIELGEW----VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (812)
Q Consensus 20 m~i~~i~i~nf~~~-~~~~i~f~~g----~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l 94 (812)
|+|.+|++.||++| +...|+|+++ +++|+||||||||||+++|.|+|+|.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 88999999999998 6788999765 999999999999999999999999887643333233456667777889999
Q ss_pred EEEeCCCCCCCccccCCeEEEEEEE
Q 003532 95 ELKNRGEDAFKPEIFGDSIIIERRI 119 (812)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~r~~ 119 (812)
.|.+.+ ..+.+.|.+
T Consensus 81 ~f~~~~----------~~~~~~r~~ 95 (213)
T cd03279 81 TFQLGG----------KKYRVERSR 95 (213)
T ss_pred EEEECC----------eEEEEEEec
Confidence 998763 356666644
No 53
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.51 E-value=5.1e-14 Score=133.35 Aligned_cols=49 Identities=37% Similarity=0.617 Sum_probs=43.8
Q ss_pred EEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCC
Q 003532 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (812)
Q Consensus 24 ~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~ 72 (812)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.|||||.++.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999999999999999999999999998754
No 54
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=9.5e-08 Score=102.69 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=24.2
Q ss_pred EEecC-CCccHHHHHHHHhcccceeeecChhhHHHH
Q 003532 483 VTLVN-GDTWAPAVEQAIGRLLNAFIVTDHKDALLL 517 (812)
Q Consensus 483 ~~~~~-~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 517 (812)
+.|.+ ++.|+.|+..++|+. +||++.+.|..+
T Consensus 584 ~Dvi~ye~e~eka~~~a~gn~---Lvcds~e~Ar~l 616 (1141)
T KOG0018|consen 584 IDVINYEPEYEKAVQFACGNA---LVCDSVEDARDL 616 (1141)
T ss_pred EEecCCCHHHHHHHHHHhccc---eecCCHHHHHHh
Confidence 44443 478899999999887 999999887543
No 55
>PRK02224 chromosome segregation protein; Provisional
Probab=99.45 E-value=8.8e-08 Score=111.80 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=4.6
Q ss_pred EEEcCCCCC
Q 003532 46 FITGQNGSG 54 (812)
Q Consensus 46 ~I~G~NgsG 54 (812)
+++|....+
T Consensus 46 ~l~g~~~~~ 54 (880)
T PRK02224 46 ALYGSKALD 54 (880)
T ss_pred HhCCCcccc
Confidence 356655433
No 56
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=2.5e-07 Score=98.98 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 003532 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (812)
Q Consensus 186 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (812)
..+..++.....+.+.+......+..++..+..+.+.++.+.+.......+.-+.....|+.+......+..+......+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34566777888888999999999999999999999999999999988999999999999999888888888888999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (812)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (812)
..++..+.+.+..+....+.++.+.......+......+......+.+....+....+.+.....++..+..........
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003532 346 MQKMVNRVKGLEQQVHDIQ 364 (812)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~ 364 (812)
+......+..++..+....
T Consensus 341 i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHhhhhhcC
Confidence 8888888888888776653
No 57
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.35 E-value=3.6e-06 Score=99.51 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 003532 636 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASA 715 (812)
Q Consensus 636 ~l~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (812)
.++.++.+++..+..+...+..+......+..+...+...+.+....+..+......+..++..+..++.. ....
T Consensus 1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~-----e~r~ 1316 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE-----ETRE 1316 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 35566666666666666666666666667777777777777777777777777777777777777777666 5555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHhhhh
Q 003532 716 VDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDT-FEAAEKELMEIEKNLQTSESVSY 794 (812)
Q Consensus 716 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 794 (812)
...+...+..+..+...+..+++.-.+....+..++..+..+..+.+.+....... ...++.....+...+..+.....
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666666667777777777776666666777777777766666666666654433 55566666666666666666555
Q ss_pred hhhhh
Q 003532 795 SFLNF 799 (812)
Q Consensus 795 ~~~~~ 799 (812)
.+...
T Consensus 1397 ~~~~~ 1401 (1930)
T KOG0161|consen 1397 AANAK 1401 (1930)
T ss_pred HHHHH
Confidence 54443
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.33 E-value=1.9e-06 Score=101.73 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 276 IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG 355 (812)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (812)
+..+...+++.+..+..+..+.......+..+..++..+...+..+...-..++..+..+...+...+.+...+......
T Consensus 938 ~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 938 VQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333334444444333333333333333334444444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 003532 356 LEQQVHDIQEQ 366 (812)
Q Consensus 356 ~~~~l~~~~~~ 366 (812)
++..+..++..
T Consensus 1018 le~~l~~le~~ 1028 (1930)
T KOG0161|consen 1018 LEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.31 E-value=3.3e-06 Score=99.57 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=34.5
Q ss_pred ccccEEecCCCccHHHHHHHHhcccceeeecChhhHHHHHHHHHH
Q 003532 479 IGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCARE 523 (812)
Q Consensus 479 ~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 523 (812)
+.+++.... +.+.+++...+|+...++||++...+...+.++..
T Consensus 687 vsel~~~v~-~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~ 730 (1486)
T PRK04863 687 LSEIYDDVS-LEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLED 730 (1486)
T ss_pred hhHhhhccC-cchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccC
Confidence 445555224 67899999999999999999999988887777753
No 60
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.31 E-value=5.4e-12 Score=116.18 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=59.7
Q ss_pred EeEEEEeecccc-cceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCc------eeEEEE
Q 003532 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (812)
Q Consensus 22 i~~i~i~nf~~~-~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~------~~~v~l 94 (812)
|++|.+.||++| .+..++|.+|+++|+||||||||||++||.|+++.......|+....+++..|.. ...|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 568999999999 7889999999999999999999999999999986543222344444556655443 356777
Q ss_pred EEEeC
Q 003532 95 ELKNR 99 (812)
Q Consensus 95 ~~~~~ 99 (812)
.|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 77755
No 61
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.26 E-value=1.1e-11 Score=115.52 Aligned_cols=78 Identities=33% Similarity=0.497 Sum_probs=58.5
Q ss_pred eeEeEEEEeecccccceEE--EeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCC-----ceeEE
Q 003532 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC-----SYAMV 92 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i--~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~-----~~~~v 92 (812)
|.|++|.+.||++|++..+ +++.+++.|+|||||||||+|++|.|++|..... .|......++..+. +.+++
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHH-hhhhhHHHHhcCCCCCCCCceEEE
Confidence 8899999999999976555 5677899999999999999999999998865432 33334445554432 34567
Q ss_pred EEEEEe
Q 003532 93 EVELKN 98 (812)
Q Consensus 93 ~l~~~~ 98 (812)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777764
No 62
>COG5293 Predicted ATPase [General function prediction only]
Probab=99.14 E-value=2.9e-06 Score=82.31 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=40.1
Q ss_pred CeeEeEEEEeecccccceEEEeCCceEEEEc-----------CCCCChhHHHHHHHHHhcCCcCC
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEWVNFITG-----------QNGSGKSAILTALCIAFGCRAKG 72 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G-----------~NgsGKStl~dai~~~l~~~~~~ 72 (812)
||+...+....=-.|.+ +.|.||+|+|.| .||-||||+++.|.||||++.+.
T Consensus 4 mi~~~~~~cN~q~vfk~--vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~r 66 (591)
T COG5293 4 MIKLSKLYCNHQQVFKP--VKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTIDR 66 (591)
T ss_pred eeeehheeeccccccce--eeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhcccccc
Confidence 55555555543334444 588999999998 69999999999999999998763
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=6e-05 Score=91.09 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q 003532 689 NRMSKELAFQDVKNS 703 (812)
Q Consensus 689 ~~~~~~~~~~~l~~~ 703 (812)
.+..+..++..+..+
T Consensus 1029 ~l~el~~eI~~l~~~ 1043 (1311)
T TIGR00606 1029 ELKEVEEELKQHLKE 1043 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 64
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.06 E-value=7.2e-11 Score=110.15 Aligned_cols=52 Identities=35% Similarity=0.568 Sum_probs=47.9
Q ss_pred eeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcCCcC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAK 71 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~~~~ 71 (812)
|+|.+|.+.||++|....|+|+++ .|+|+||||+||||++|||+-||.-...
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid 53 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFID 53 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhcc
Confidence 789999999999999999999998 9999999999999999999999865443
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.03 E-value=8.4e-05 Score=86.71 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 645 ERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (812)
Q Consensus 645 ~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 701 (812)
...+.++...+..+..++..++..+..+..++.....++..++.....+......+.
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444444444433433333333
No 66
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.95 E-value=4.5e-09 Score=104.20 Aligned_cols=51 Identities=25% Similarity=0.443 Sum_probs=47.7
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK 71 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~ 71 (812)
|+|.+|.|.||+++....|+|++ +|+++|+|++||||+++||.++|+....
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~ 51 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR 51 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc
Confidence 89999999999999999999985 8999999999999999999999997643
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.89 E-value=0.00063 Score=81.36 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=8.9
Q ss_pred cCCCCChhHHHHH
Q 003532 49 GQNGSGKSAILTA 61 (812)
Q Consensus 49 G~NgsGKStl~da 61 (812)
+|-++||-++.+.
T Consensus 49 v~k~~~rksF~~y 61 (1201)
T PF12128_consen 49 VPKTSGRKSFDDY 61 (1201)
T ss_pred CCccchhhhHHHH
Confidence 6777788876553
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.87 E-value=1.2e-05 Score=76.34 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003532 192 NDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQ 227 (812)
Q Consensus 192 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~ 227 (812)
...++.+...+..+...+..........+.++..+.
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~ 42 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ 42 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 69
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.84 E-value=3.9e-09 Score=94.34 Aligned_cols=68 Identities=40% Similarity=0.580 Sum_probs=49.8
Q ss_pred EEEeecccc-cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcCCcCCcccccchhhhhhcCCceeEEEEEE
Q 003532 25 VRLENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (812)
Q Consensus 25 i~i~nf~~~-~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~ 96 (812)
|.+.||.+| .+.+|+|.++ +++|+|||||||||++++|.|+++.......|. +.+..|...+.+++.|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR----SGVKAGCIVAAVSAEL 71 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc----CcccCCCcceeeEEEE
Confidence 677889987 6788887654 999999999999999999999988776544442 2223444445555444
No 70
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.83 E-value=7e-09 Score=89.35 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=44.7
Q ss_pred CeeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHh
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
..++.+|.|.||.+|-..+++|+.-+|.+.|.|||||||+|.|+..+|
T Consensus 4 r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taL 51 (227)
T PF04310_consen 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITAL 51 (227)
T ss_dssp B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHH
T ss_pred ccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHh
Confidence 468999999999999999999999999999999999999999998887
No 71
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=2e-05 Score=74.86 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 392 ANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (812)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (812)
+...+.........+...+..+...+..+...+...+.....+...+
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444444
No 72
>PF13166 AAA_13: AAA domain
Probab=98.82 E-value=0.00014 Score=83.21 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.6
Q ss_pred eccccc--ceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCc
Q 003532 29 NFMCHS--SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (812)
Q Consensus 29 nf~~~~--~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~ 70 (812)
||++|+ +.++++.+++|+|||.|||||||+-..|.-+-.+.+
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 678885 556666678999999999999999999986544443
No 73
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=7.2e-09 Score=96.16 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=41.4
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHH
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~ 65 (812)
|+|.+|.+.||++|....+++. ++|+|+|.||+||||+++++.++
T Consensus 1 ~~l~si~vknyRs~r~l~lei~-~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEIR-RVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhcccccc-ceEEEEcCCCCchhHHHHHHHHH
Confidence 7899999999999998888776 79999999999999999999865
No 74
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.5e-08 Score=103.70 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=48.6
Q ss_pred eeEeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcCC
Q 003532 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCR 69 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~ 69 (812)
|+|.+|+|.||++|...++.|..|+|+|+|+|.+||||++|||+.+|...
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999999999999999999875
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.65 E-value=0.00067 Score=70.12 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=4.4
Q ss_pred EEEEeeccc
Q 003532 24 RVRLENFMC 32 (812)
Q Consensus 24 ~i~i~nf~~ 32 (812)
.|.+.|...
T Consensus 6 ~ViF~nV~~ 14 (546)
T PF07888_consen 6 QVIFNNVAK 14 (546)
T ss_pred eEEEecccc
Confidence 345555544
No 76
>PF13175 AAA_15: AAA ATPase domain
Probab=98.61 E-value=3.7e-08 Score=105.07 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=44.5
Q ss_pred EeEEEEeecccccce-EEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCc
Q 003532 22 ITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (812)
Q Consensus 22 i~~i~i~nf~~~~~~-~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~ 70 (812)
|++|.|.|||+|++. .|+|++++|+|+|.|||||||||+||..++++..
T Consensus 1 ik~i~IkNfR~i~~~~~i~~~~~itiiiG~N~sGKT~IL~aL~~~~~~~~ 50 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEINFDEDITIIIGENNSGKTNILEALDLFFNGKF 50 (415)
T ss_pred CcEEEEecccccCccceeecCCceEEEEccCCCCHHHHHHHHHHhcCccc
Confidence 679999999999988 9999999999999999999999999976666554
No 77
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.55 E-value=4.7e-08 Score=96.23 Aligned_cols=47 Identities=38% Similarity=0.642 Sum_probs=41.4
Q ss_pred eEeEEEEeecccccceEEE-eCCceEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 21 TITRVRLENFMCHSSLQIE-LGEWVNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 21 ~i~~i~i~nf~~~~~~~i~-f~~g~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
+|.++.|.||++|.+..+. |. ++|+|+|+||||||+|++||.|+.+.
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 4889999999999887775 54 69999999999999999999987653
No 78
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.52 E-value=1.8e-08 Score=113.63 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 636 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNV 679 (812)
Q Consensus 636 ~l~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 679 (812)
.++.+|.+|+..+......-..+...+..+..++..++..+...
T Consensus 550 KLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~ 593 (859)
T PF01576_consen 550 KLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEA 593 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34455555555554444444444444444444444444444333
No 79
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=6e-08 Score=83.45 Aligned_cols=40 Identities=20% Similarity=0.461 Sum_probs=32.9
Q ss_pred EEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 24 RVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 24 ~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++.+-||+..++.++..+|| +.+|+|||||||||+||+|.
T Consensus 12 sVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 12 SVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 44555666667888888886 99999999999999999975
No 80
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.42 E-value=0.0061 Score=67.24 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=27.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 713 ASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKE 767 (812)
Q Consensus 713 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 767 (812)
...+..+..++............++..+-..+..+.........++..+...+..
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEK 601 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344445554444444445555555555555555555555555555555555443
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.37 E-value=0.00043 Score=76.81 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003532 193 DLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKI 230 (812)
Q Consensus 193 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 230 (812)
..+..+...+..+...+..+..++..+...+..+....
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~ 211 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN 211 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44445555666666666666666665555555555443
No 82
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=4.1e-07 Score=77.85 Aligned_cols=36 Identities=44% Similarity=0.768 Sum_probs=32.1
Q ss_pred EEEeCCceEEEEcCCCCChhHHHHHHHHHhcCCcCC
Q 003532 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (812)
Q Consensus 37 ~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~ 72 (812)
.++|.+.+|+|+|.||+|||||++||...+|.++..
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aG 67 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAG 67 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccC
Confidence 578988999999999999999999999888766654
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.35 E-value=0.0091 Score=65.77 Aligned_cols=8 Identities=50% Similarity=0.696 Sum_probs=5.1
Q ss_pred CCcccccC
Q 003532 2 GDYRFSSE 9 (812)
Q Consensus 2 ~~~~~~~~ 9 (812)
|||+|-|.
T Consensus 896 GdP~lg~g 903 (1758)
T KOG0994|consen 896 GDPRLGSG 903 (1758)
T ss_pred CCcccCCC
Confidence 56666664
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.32 E-value=0.0038 Score=64.75 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003532 200 NHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (812)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~ 231 (812)
.++..+.+.+...-.++..|+.+-..|..++.
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~ 73 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDIN 73 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 85
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.1e-07 Score=77.64 Aligned_cols=40 Identities=33% Similarity=0.386 Sum_probs=32.4
Q ss_pred EEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 24 RVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 24 ~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++.+.|=+-.++..+++.|| ++.|+|||||||||++.+|+
T Consensus 8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~Ls 48 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALS 48 (259)
T ss_pred EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhh
Confidence 34455545558888999886 88899999999999999986
No 86
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.25 E-value=1.9e-07 Score=105.40 Aligned_cols=124 Identities=17% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccch
Q 003532 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 716 (812)
Q Consensus 637 l~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (812)
+...+.+++.....+......++.....+..++-.+...+..+...+..++.....+..++..+...+.. ....+
T Consensus 382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~-----~~k~v 456 (859)
T PF01576_consen 382 FDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD-----AGKSV 456 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-----hccch
Confidence 3445555555555555555555566666666666666666665555555555555566666555555554 44445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 717 DEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESA 765 (812)
Q Consensus 717 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 765 (812)
..+......|+.++..+...+..++..+.......-.+...+..++..+
T Consensus 457 ~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~ 505 (859)
T PF01576_consen 457 HELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI 505 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555544444443
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.24 E-value=0.0099 Score=65.50 Aligned_cols=8 Identities=0% Similarity=0.052 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003532 429 KKCREIRS 436 (812)
Q Consensus 429 ~~~~~l~~ 436 (812)
.++..|+.
T Consensus 1731 aeL~~Le~ 1738 (1758)
T KOG0994|consen 1731 AELAGLEK 1738 (1758)
T ss_pred HHhhhHHH
Confidence 33333333
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.22 E-value=0.012 Score=64.32 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=30.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003532 177 DKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (812)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~ 231 (812)
.+|+.+.....+..+...+..+...+..+...+..+...-.....++..+.....
T Consensus 96 ~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~ 150 (569)
T PRK04778 96 DKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR 150 (569)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666665544444444444444433
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.21 E-value=0.01 Score=64.93 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003532 261 QLKEQT 266 (812)
Q Consensus 261 ~~~~~~ 266 (812)
.+..+.
T Consensus 283 ~~~~i~ 288 (569)
T PRK04778 283 KNEEIQ 288 (569)
T ss_pred HHHHHH
Confidence 333333
No 90
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.21 E-value=0.031 Score=66.41 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003532 417 IRRISDEIEDYDKKCREIRSEI 438 (812)
Q Consensus 417 ~~~l~~~~~~~~~~~~~l~~~l 438 (812)
+..++..+..+...+..|...+
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l 881 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRL 881 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443333
No 91
>PRK11637 AmiB activator; Provisional
Probab=98.21 E-value=0.0029 Score=66.76 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHH
Q 003532 218 PTEKELSELQRKIR 231 (812)
Q Consensus 218 ~~~~e~~~l~~~~~ 231 (812)
.+..+++.++.++.
T Consensus 44 ~~~~~l~~l~~qi~ 57 (428)
T PRK11637 44 DNRDQLKSIQQDIA 57 (428)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555444
No 92
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.21 E-value=2.1e-06 Score=80.33 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=26.7
Q ss_pred cceEEEeCC-ceEEEEcCCCCChhHHHHHHHHHhc
Q 003532 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 34 ~~~~i~f~~-g~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
.+..+.+.+ .+++|+||||||||||+.+|.-.|-
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445556666 4999999999999999999875543
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.19 E-value=0.0071 Score=58.13 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q 003532 202 LNKGDALVLELEATI 216 (812)
Q Consensus 202 l~~~~~~~~~~~~~~ 216 (812)
++.+...+..+..++
T Consensus 76 lddi~~qlr~~rtel 90 (499)
T COG4372 76 LDDIRPQLRALRTEL 90 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 94
>PRK11637 AmiB activator; Provisional
Probab=98.16 E-value=0.0044 Score=65.39 Aligned_cols=85 Identities=12% Similarity=0.273 Sum_probs=46.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 003532 210 LELEATIKPTEKELSELQRKIRNME-HVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHS 288 (812)
Q Consensus 210 ~~~~~~~~~~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (812)
.....++..++.+++.++..+.... ....+..++..+...+. .+...+.....++..++.++..++..+..++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~-----~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS-----QASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988888776553 33444444444443333 44444444444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 003532 289 ILESLRDCFMK 299 (812)
Q Consensus 289 ~~~~~~~~~~~ 299 (812)
.+......+..
T Consensus 118 ~l~~~~~~l~~ 128 (428)
T PRK11637 118 QQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 95
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=4.2e-06 Score=82.28 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=44.6
Q ss_pred ccccCCCCCCCC----CCCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 5 RFSSESGYGPQR----SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 5 ~~~~~~~~~~~~----~~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+||.|++|..+ ..|..+..|.+. +..-+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 2 TYSSRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred cccccccccccccCCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 367778887654 457777777765 211346777888876 88899999999999999886
No 96
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.14 E-value=0.016 Score=60.30 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhhhHHHH
Q 003532 205 GDALVLELEATIKPTEKEL 223 (812)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~ 223 (812)
++.....++.++..++.++
T Consensus 162 Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 97
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2.7e-06 Score=73.73 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.1
Q ss_pred cceEEEeCC-ceEEEEcCCCCChhHHHHHHHHHhc
Q 003532 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 34 ~~~~i~f~~-g~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
++..++|++ |+|.|+||||||||||+-.+.-++.
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcc
Confidence 445667766 6999999999999999999887664
No 98
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.11 E-value=0.028 Score=62.21 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQ 677 (812)
Q Consensus 640 ~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 677 (812)
++..++.++..+...+..++..+.+....+..+..+..
T Consensus 466 ele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 466 ELETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 33444444444444444444444444444443333333
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.08 E-value=0.006 Score=67.06 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003532 413 EKNEIRRISDEIEDYDKKCREIRSEIRELQQ 443 (812)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 443 (812)
|-..+.+.+.+++.+...+..-+.++..|..
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.07 E-value=0.017 Score=60.06 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003532 195 LQSIYNHLNKGDALVLELEATIKPTEKELSELQR 228 (812)
Q Consensus 195 l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~ 228 (812)
+..+.++|..--+.+..|+.+...|..++..++.
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444443
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.05 E-value=0.0017 Score=55.52 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003532 644 LERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (812)
Q Consensus 644 l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 704 (812)
|+.+...+......++..+..++........+|..+...+..++..+..+...+..+...+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444333
No 102
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=5e-06 Score=76.00 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=41.5
Q ss_pred EeEEEEeecccccceEEEeCCceEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 22 i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
|.++.+.||++|....|.+.| +|+++|||.|||||.+.+|...+.|
T Consensus 2 i~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 2 ILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred cceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 678999999999888999985 9999999999999999999876654
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.066 Score=63.10 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=10.0
Q ss_pred ccchhhhhhcCCCchhHHH
Q 003532 162 SQDKSREFLHSGNDKDKFK 180 (812)
Q Consensus 162 ~q~~~~~~l~~~~~~~~~~ 180 (812)
.++....++....+...|.
T Consensus 147 ~~~~r~~~ld~~~~~~~~~ 165 (895)
T PRK01156 147 DPAQRKKILDEILEINSLE 165 (895)
T ss_pred CHHHHHHHHHHHhChHHHH
Confidence 4555666655544444443
No 104
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.02 E-value=8.8e-06 Score=72.17 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
++..+++.+| +++|+||+|||||||+.+|..
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4455566665 888999999999999999864
No 105
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=1.7e-06 Score=78.34 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.8
Q ss_pred ecccc---cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 29 NFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 29 nf~~~---~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.||++ +++++++.+| ++.|+|||||||||+++.|.
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
Confidence 45555 6777888776 88899999999999999876
No 106
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=8.8e-06 Score=78.57 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=33.5
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||+.+..|.+. +-.-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44566666553 111246677788776 88899999999999999985
No 107
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.99 E-value=1.1e-05 Score=75.79 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||..++.|.+. +...+.+..+.+.+| +.+|+||||||||||+..|.
T Consensus 1 m~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred CEEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667777764 111246677777776 88899999999999999876
No 108
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.3e-05 Score=71.76 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCeeEeEEEEeecc--cc-cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM--CH-SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~--~~-~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+|-.|+.|.+.==+ .+ .+..+++.+| +++|.||||||||||..+|.
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34556555554322 33 6777888776 88999999999999766654
No 109
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=7e-06 Score=76.44 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=24.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+.++.+.+| ++.|+||||||||||+.+|.
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3445566664 88999999999999999976
No 110
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=8e-06 Score=70.54 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=27.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
|.+..|.|.+| ...|+||||+|||||+..|.=+
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc
Confidence 57778888886 7789999999999999987643
No 111
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.96 E-value=4.2e-05 Score=64.65 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=83.1
Q ss_pred CCcccccccEEecCCCccHHHHHHHHhcccceeeecChhhHHHHHHHHHHhCcCCcceEEEecCCCCCCCCCCCC--CCC
Q 003532 474 PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHML--PHT 551 (812)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 551 (812)
+++|.+.+++.+ + +.|..|++.++|+.+.+++|++..++..+..+++..+.++.+|.+++............. ...
T Consensus 3 gv~G~l~dli~v-~-~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 3 GVLGRLADLIEV-D-PKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TEEEEGGGSEEE-S-GGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CeeeeHHhceec-C-HHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 468899999999 6 899999999999999999999999999999999987778888887764432211111110 124
Q ss_pred CCccchhccccCchhHHHHhhccCccceEEEeCChHHHHHH
Q 003532 552 KHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAV 592 (812)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ 592 (812)
...++.+.+.+.++.+...+. .-+++++++++++.|..+
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~--~llg~~~vv~~l~~A~~l 119 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALE--FLLGDVVVVDDLEEARKL 119 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHH--HHHTTEEEESSHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHH--HHcCCEEEECCHHHHHHh
Confidence 455667778874444443332 235678999999988765
No 112
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.042 Score=58.20 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 388 EIDAANITLSRMKEEDSALSEKLSKEKNE 416 (812)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 416 (812)
+++++..+......+++.+..++.++...
T Consensus 550 qldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 550 QLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33333333333333333333344433333
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.94 E-value=0.0038 Score=53.36 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (812)
Q Consensus 639 ~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 701 (812)
.+..........+...+..+......++.++..+...+..+..++..++..+..+...+....
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444445555555555555555555555555555555555555555544444433
No 114
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=2.3e-05 Score=77.12 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=42.3
Q ss_pred ccccCCCCCCCC--CCCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 5 RFSSESGYGPQR--SGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 5 ~~~~~~~~~~~~--~~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.-..|+.++.+ ++|..|+.|.+. |+ -|.+..++|.+| +++|+||||||||||+.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~i~nl~~~-~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 5 RLGGQSGAADVDAAAPAMAAVNLTLG-FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred ccCCCCCCccccccCcEEEEeeEEEE-ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 444456666555 556677777765 32 236677788776 78899999999999999985
No 115
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.93 E-value=1.3e-05 Score=73.39 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=34.9
Q ss_pred CeeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.+.+.- -+.+.++.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~--~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 4 VLEVRGLSVKG--AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEEEeccEEEe--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 56666666543 568888899887 88899999999999999876
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.92 E-value=0.006 Score=56.33 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 003532 458 ISLLRAIER 466 (812)
Q Consensus 458 ~~~~~~~~~ 466 (812)
......+..
T Consensus 177 l~~yeri~~ 185 (239)
T COG1579 177 LSEYERIRK 185 (239)
T ss_pred HHHHHHHHh
Confidence 333344433
No 117
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.91 E-value=1.8e-05 Score=74.26 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=33.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 4666666654 211246777888887 88999999999999999865
No 118
>PRK09039 hypothetical protein; Validated
Probab=97.91 E-value=0.0032 Score=63.29 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 719 ISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEI 782 (812)
Q Consensus 719 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 782 (812)
+..++........+...++..+..++..++.++..++..++..+....+.+..+..+..++..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444444444443333
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.90 E-value=0.0061 Score=56.24 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 716 VDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESA 765 (812)
Q Consensus 716 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 765 (812)
+..+..++..+...+..+..++..+...+..+...+..+...+..+...+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333333333
No 120
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.90 E-value=0.048 Score=60.20 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003532 378 IEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQ 443 (812)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 443 (812)
+-..+..++.+-..++..++.-..-..+|-..+.+...+++.+...+..-+.++.+|...+..+-.
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444433333334566677778888888888888888888888888877654
No 121
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.90 E-value=1.2e-05 Score=72.21 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai 62 (812)
+++..+.|.+| +++|+||||||||||+.+|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46677888876 8889999999999999987
No 122
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.90 E-value=2.1e-05 Score=73.47 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=33.4
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. +..-+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566666653 212246777888776 88899999999999999875
No 123
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.89 E-value=2.2e-05 Score=68.39 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+.+++|.+| +++|+||||+|||||+++|.
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 46777888886 77899999999999999974
No 124
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.89 E-value=0.059 Score=58.22 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhhhhh
Q 003532 775 AEKELMEIEKNLQTSESVSYSFLNFF 800 (812)
Q Consensus 775 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 800 (812)
++..+..+..+++.+..+..+++...
T Consensus 1024 feetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1024 FEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44455555556666665555555543
No 125
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=1.8e-05 Score=77.23 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.8
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||+.+..|.+. |+ -+.+..+++.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~l~~~~l~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 1 MTLRTENLTVG-YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred CEEEEEeEEEE-ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667766663 22 235666777776 78899999999999999985
No 126
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=2.1e-05 Score=76.42 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.1
Q ss_pred CeeEeEEEEee--cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN--FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n--f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.- ..-+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566665532 11246677888886 88899999999999999977
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2e-05 Score=76.29 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||+.+..|.+. +-.-+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45555666553 112246667788776 88899999999999999975
No 128
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.3e-05 Score=76.51 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=34.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +..-|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667777654 222346777888887 88899999999999999986
No 129
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.86 E-value=2.2e-05 Score=74.53 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=33.1
Q ss_pred CeeEeEEEEee---cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n---f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.- ..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566666541 11246677888876 88899999999999999875
No 130
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.3e-05 Score=76.43 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|+.++.|.+. +-..+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5566666553 111346777888887 888999999999999999863
No 131
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.85 E-value=2.2e-05 Score=76.15 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88899999999999999875
No 132
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.3e-05 Score=76.36 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=31.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4455555542 111235666777776 88899999999999999885
No 133
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.8e-05 Score=75.08 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=32.4
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||..+..|.+. |+ .+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 2 ~~l~~~~l~~~-~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 2 NEIEFKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred ceEEEEeEEEE-eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555543 22 246677778776 88899999999999999876
No 134
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=2.7e-05 Score=75.88 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
||+.+..|.+. |+ -+.+..+++.+| +++|+||||||||||+.+|.-.
T Consensus 2 ~~l~~~~v~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 2 YRIEVENLNTY-FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred cEEEEEeEEEE-eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45566666653 22 246677788776 8889999999999999999643
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.84 E-value=2.7e-05 Score=75.98 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=34.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
++.+..|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.=
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4666666653 112346777788776 889999999999999999864
No 136
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3e-05 Score=76.11 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 17 ~~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+|..+..|.+. +...+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 335666666653 112246677888876 88899999999999999885
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.83 E-value=0.074 Score=57.51 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=3.4
Q ss_pred CCceEEEE
Q 003532 41 GEWVNFIT 48 (812)
Q Consensus 41 ~~g~~~I~ 48 (812)
++|+-+++
T Consensus 61 d~ncG~FV 68 (1243)
T KOG0971|consen 61 DENCGVFV 68 (1243)
T ss_pred CCCcceEe
Confidence 34444443
No 138
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.83 E-value=3.2e-05 Score=71.90 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=30.6
Q ss_pred CeeEeEEEEeecc-cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM-CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~-~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+.--+ ...+..++|.+| +.+|+|+||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455555544111 112266777776 88899999999999999985
No 139
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.83 E-value=3.2e-05 Score=73.47 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=32.5
Q ss_pred CeeEeEEEEeecc-----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~-----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. |+ -+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 1 MIRFEQVSKA-YPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred CeEEEEEEEE-ecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455666553 21 246677788776 88899999999999999976
No 140
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.83 E-value=2.9e-05 Score=74.83 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.8
Q ss_pred eeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..+..|.+. +..-+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345555443 212346677888886 88899999999999999985
No 141
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=2.4e-05 Score=75.71 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=31.8
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ .+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 3 TLTAKNLAKA-YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred eEEEeCcEEE-eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555543 22 235666777776 88899999999999999976
No 142
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.82 E-value=3.3e-05 Score=77.11 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..++.|... +...+++..+.+.+| +..|+|||||||||++..|.
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~ 54 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLL 54 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 35566666553 111235666777776 88899999999999999986
No 143
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.81 E-value=1.8e-05 Score=68.91 Aligned_cols=29 Identities=41% Similarity=0.627 Sum_probs=24.5
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeec
Confidence 456777776 88999999999999998765
No 144
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.81 E-value=3.2e-05 Score=75.99 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=37.6
Q ss_pred CCCCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 16 ~~~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
...|+.++.|.+. +-..+.+..+.|.+| +++|+|+||||||||+.+|.=
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3447888888774 212346777888886 888999999999999999873
No 145
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.81 E-value=4.7e-05 Score=72.90 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=37.5
Q ss_pred CCCeeEeEEEEee-----cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 17 SGAGTITRVRLEN-----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 17 ~~~m~i~~i~i~n-----f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..|+.+..+.+.- ...+.+..++|.+| +++|+||||||||||+++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578888888751 12357778888876 88899999999999999886
No 146
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=3.4e-05 Score=75.99 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 4556666553 111346777888887 88899999999999999875
No 147
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.80 E-value=3.1e-05 Score=77.52 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=32.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|... +..-+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555655542 211246667778776 88899999999999999986
No 148
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=3.1e-05 Score=69.13 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
|.+..++|.+| +++|+||||+|||||+++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677788875 88899999999999999986443
No 149
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.2e-05 Score=75.78 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=35.6
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..|..|.+. +...+.+..++|.+| +++|+||||||||||+.+|.-
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 6778888764 212246777888776 888999999999999998873
No 150
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.80 E-value=3.2e-05 Score=77.23 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=32.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++.+..+... +..-+.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 3455555543 122236667777787 88899999999999999875
No 151
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.80 E-value=3.1e-05 Score=74.92 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=31.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +-.-+.+.++.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455555543 111235667778776 78899999999999999875
No 152
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.80 E-value=3.6e-05 Score=74.74 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=33.0
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+. +...+.+..++|.+| +.+|+|+||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455666543 112346777888776 88899999999999999876
No 153
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.79 E-value=3.1e-05 Score=76.12 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|+.++.|.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 6 ~~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 6 NLVDMRGVSFT-RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred ceEEEeCeEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666666653 22 246677788776 88899999999999999876
No 154
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=3.2e-05 Score=75.27 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|+.++.+.+. +...+.+..+++.+| +++|+||||||||||+.+|.-
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5667766654 212346667777775 888999999999999999963
No 155
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.79 E-value=0.054 Score=54.74 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003532 427 YDKKCREI 434 (812)
Q Consensus 427 ~~~~~~~l 434 (812)
+..++..+
T Consensus 267 le~el~~l 274 (312)
T PF00038_consen 267 LEEELAEL 274 (312)
T ss_dssp HHHHHHHH
T ss_pred cchhHHHH
Confidence 33333333
No 156
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=2.6e-05 Score=73.73 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=27.4
Q ss_pred ccceEEEeCCceEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEWVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+|+.+|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHh
Confidence 4677788888988899999999999999986
No 157
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.78 E-value=4.2e-05 Score=73.35 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=33.3
Q ss_pred CeeEeEEEEe--ec----ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NF----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf----~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. +. .-|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILA 57 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4566666653 10 1356667788775 88999999999999999986
No 158
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=7.5e-05 Score=66.12 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=30.6
Q ss_pred EeEEEEeecccc-------cceEEEeCC-ceEEEEcCCCCChhHHHHHHHH
Q 003532 22 ITRVRLENFMCH-------SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 22 i~~i~i~nf~~~-------~~~~i~f~~-g~~~I~G~NgsGKStl~dai~~ 64 (812)
.-.+.+.|+.-| .+..++|.+ .+|+|+||+|+||||++.++--
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 334555555443 345566655 4999999999999999999863
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.78 E-value=3.9e-05 Score=74.21 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=32.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. +-.-+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455555553 111246677888776 88899999999999999876
No 160
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4e-05 Score=74.99 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=32.8
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..+..|.+. +..-+.+..+.|.+| +++|+||||||||||+..|.-
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4455555543 222245667788776 888999999999999998763
No 161
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.78 E-value=4.4e-05 Score=72.66 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999985
No 162
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.78 E-value=3.2e-05 Score=75.69 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=25.5
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..++|.+| +.+|.||||||||||+..|.
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566777776 88899999999999999876
No 163
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=3.7e-05 Score=74.93 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=32.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..|..|.+. +..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556666553 111246667777776 88899999999999999877
No 164
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.77 E-value=3.7e-05 Score=75.44 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=33.0
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+..+..|.+. +-..+.+..+.|.+| +++|+||||||||||+.+|.=
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555555553 111246677788776 888999999999999999873
No 165
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.77 E-value=3.9e-05 Score=72.78 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888776 88899999999999999986
No 166
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=4e-05 Score=75.04 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=33.9
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..|+.|.+. |+ .+.+..+.+.+| +++|+||||||||||+..|.=
T Consensus 12 ~l~i~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 12 VYQINGMNLW-YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred eEEEeeEEEE-ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566666663 32 236667778786 888999999999999999873
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=3.5e-05 Score=75.82 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=32.6
Q ss_pred CeeEeEEEEeecc----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..|..|.+.--+ .+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555553111 246667788776 88899999999999999986
No 168
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.77 E-value=0.1 Score=57.09 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 286 RHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQ 364 (812)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (812)
++.++..++..+.....+.+.+......+......++.+...++.++.++.-.-..+-..+.+++.+.-.+++++..+.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444444555555544444455555555555555555555543
No 169
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.77 E-value=3.8e-05 Score=74.89 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=32.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555543 112346677888786 78899999999999999875
No 170
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=5.7e-05 Score=74.70 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..+..|.+. +-..|.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666666653 111246677888886 88899999999999999986
No 171
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.77 E-value=5.6e-05 Score=74.10 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=35.6
Q ss_pred CeeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+.+..|.+.+-.-+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 39 ~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred eEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4677777775433457788888887 88899999999999999875
No 172
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=4.8e-05 Score=73.04 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred CeeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+.--+.+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455666554211223556677776 88899999999999999875
No 173
>PRK10908 cell division protein FtsE; Provisional
Probab=97.76 E-value=4.6e-05 Score=72.64 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=32.5
Q ss_pred CeeEeEEEEee---cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n---f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.- ...+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34555555431 11246777888776 88899999999999999986
No 174
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=4.3e-05 Score=75.82 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~ 54 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFN 54 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88899999999999999986
No 175
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=4.6e-05 Score=74.96 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=34.2
Q ss_pred CeeEeEEEEe--e-cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--N-FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--n-f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|+.++.|.+. + ...+.+..++|.+| +++|+||||||||||+.+|.-
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666653 1 11357777888887 888999999999999999863
No 176
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=4.6e-05 Score=73.27 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=34.3
Q ss_pred CeeEeEEEEeec------ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf------~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+.-- .-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 566777776411 1246677788776 88899999999999999986
No 177
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.75 E-value=4.4e-05 Score=77.07 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+++.+| ++.|+|||||||||+|..|.
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~ 88 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMIL 88 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4556677776 88899999999999999986
No 178
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.75 E-value=4.3e-05 Score=74.82 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 17 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999886
No 179
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=3.4e-05 Score=73.48 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888776 88899999999999999876
No 180
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.088 Score=55.92 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 392 ANITLSRMKEEDSALSEKLSKEKNEIRRISDE 423 (812)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 423 (812)
+++.+.++..+......+...+..++.+++..
T Consensus 547 ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33333344443333333344444444444443
No 181
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=4.5e-05 Score=74.01 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||..+..|.+. |+ .+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~~~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 1 MIAKTTNLNLF-YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred CceeeeeeEEE-ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45556666653 22 246677788776 88899999999999999886
No 182
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.75 E-value=4.2e-05 Score=74.51 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=33.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.|+.|.+. +..-+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 4566666554 222346677788776 88899999999999999865
No 183
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=4.6e-05 Score=71.96 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677888886 77899999999999999987
No 184
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=3.9e-05 Score=74.65 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=32.3
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ -+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 3 KFNIENLDLF-YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred eEEEeccEEE-ECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555555542 21 246667778776 88899999999999999986
No 185
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.75 E-value=4.7e-05 Score=72.62 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999985
No 186
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=5.3e-05 Score=74.03 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=36.0
Q ss_pred CCCCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 16 RSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 16 ~~~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..|..++.|.+. |+ .+.+..+++.+| +++|+|+||||||||+.+|.
T Consensus 9 ~~~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 9 AQPQIKVENLNLW-YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred cceeEEEeeeEEE-eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556777777663 32 246777788887 88899999999999999986
No 187
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.74 E-value=4.7e-05 Score=72.60 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=32.5
Q ss_pred CeeEeEEEEee--cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN--FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n--f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|...- -.-+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566665431 11246677788776 88899999999999999875
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.74 E-value=5e-05 Score=73.60 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.++.+..|.+. +..-|.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34666666654 111246677788776 88999999999999999876
No 189
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.2e-05 Score=74.44 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=36.1
Q ss_pred CCCCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 16 RSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 16 ~~~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..+|..++.|.+. |+ .+.+..++|.+| +++|+||||||||||+..|.
T Consensus 10 ~~~~l~i~nl~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 10 KNIIISLQNVTIS-YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred CCceEEEEeEEEE-ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456777777654 32 246777888776 88899999999999999986
No 190
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.74 E-value=0.043 Score=52.07 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 337 GELVRNTSYMQKMVNRVKGLEQQV 360 (812)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l 360 (812)
+++.........+...+..+..+.
T Consensus 165 aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 191
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=5.6e-05 Score=68.22 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=23.0
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.++...+| +++|+|+||+||||++.+|.
T Consensus 21 gvsl~v~~Geiv~llG~NGaGKTTlLkti~ 50 (237)
T COG0410 21 GVSLEVERGEIVALLGRNGAGKTTLLKTIM 50 (237)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344444454 88999999999999999986
No 192
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=4.9e-05 Score=75.36 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=33.5
Q ss_pred CeeEeEEEEeecc--------cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~--------~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++.++.|.+. |. -+.+.+++|.+| +++|+||||||||||+.+|.
T Consensus 2 ~l~~~~l~~~-y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 2 TIRFDNVSYT-YQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred EEEEEEEEEE-ECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556666554 21 346777888887 88999999999999999986
No 193
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.2e-05 Score=74.19 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666777776 88899999999999999986
No 194
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.73 E-value=4.6e-05 Score=73.22 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88999999999999999986
No 195
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=5.1e-05 Score=75.21 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 23 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 45667778776 88899999999999999975
No 196
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=4.3e-05 Score=73.55 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999886
No 197
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.73 E-value=4.4e-05 Score=74.53 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.6
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +...+.+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4666666543 222346777888887 88899999999999999864
No 198
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.73 E-value=4.9e-05 Score=74.14 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=32.8
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. +..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556666543 111246677788776 88899999999999999987
No 199
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=6e-05 Score=75.39 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=34.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.|..|.+. +..-+.+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667777653 212246677788776 88899999999999999986
No 200
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.73 E-value=5.3e-05 Score=71.46 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+..|.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999975
No 201
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.73 E-value=4.9e-05 Score=77.18 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCeeEeEEEEeeccc---ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~~---~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
||+.|..|... |+. +.+..++|.+| +++|+||||||||||+.+|.
T Consensus 1 ~~L~i~~l~~~-~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 49 (353)
T PRK10851 1 MSIEIANIKKS-FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA 49 (353)
T ss_pred CEEEEEEEEEE-eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 55667777654 322 35667777776 88999999999999999987
No 202
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.73 E-value=4.5e-05 Score=74.48 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=33.6
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+. +...+.+..++|.+| +.+|+||||||||||+..|.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 5666666664 212256777888776 88899999999999999876
No 203
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=4.9e-05 Score=74.20 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=33.6
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. +-..+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4566666653 111246777888887 88899999999999999976
No 204
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=5.9e-05 Score=67.53 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +.+|+||||+|||||+..|.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788886 77899999999999999875
No 205
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.72 E-value=2.8e-05 Score=65.93 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCeeEeEEEEeecccccceEEEeCCceE-EEEcCCCCChhHHHHHHHHHh
Q 003532 18 GAGTITRVRLENFMCHSSLQIELGEWVN-FITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 18 ~~m~i~~i~i~nf~~~~~~~i~f~~g~~-~I~G~NgsGKStl~dai~~~l 66 (812)
|||.++.+...- ...+..-....|.. -++||||+||||++.++.-++
T Consensus 2 ~l~qln~v~~~t--RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~ 49 (248)
T COG4138 2 ILMQLNDVAEST--RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 49 (248)
T ss_pred ceeeeccccccc--cccccccccccceEEEEECCCCccHHHHHHHHhCCC
Confidence 577777776543 11222223334543 489999999999999876444
No 206
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=4.7e-05 Score=73.45 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=33.4
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 5 MLSFDKVSAH-YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEEEEeEEEe-eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4666666663 22 246677788887 88899999999999999875
No 207
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.72 E-value=4.7e-05 Score=69.85 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=27.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
.+..+.+.+| +++|+||+||||||||..|-.+.
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5677788776 99999999999999999876543
No 208
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=5.4e-05 Score=73.73 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=33.0
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+..|..|.+. +..-+.+..++|.+| +.+|+||||||||||+.+|.=
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455555553 222246667788776 888999999999999999763
No 209
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=6e-05 Score=68.82 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +..|+||||||||||+.+|.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667777776 77899999999999999986
No 210
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.71 E-value=5e-05 Score=72.59 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 46667788786 88899999999999999874
No 211
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.71 E-value=0.0012 Score=74.20 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=23.8
Q ss_pred eEEEeCC--ceEEEEcCCCCChhHHHHHHHHH
Q 003532 36 LQIELGE--WVNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 36 ~~i~f~~--g~~~I~G~NgsGKStl~dai~~~ 65 (812)
.+|.+++ .+.+|+||||+||||+|..|.-+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 4556654 48899999999999999998633
No 212
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=5e-05 Score=74.32 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=33.9
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ .+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 5 LLSVSGLMMR-FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred eEEEeeEEEE-ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 5677777764 22 246677788776 88899999999999999876
No 213
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.71 E-value=3.4e-05 Score=71.46 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888887 88899999999999999875
No 214
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.70 E-value=5.4e-05 Score=73.40 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=32.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +...+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4556655543 112346777888886 77899999999999999976
No 215
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.70 E-value=6e-05 Score=70.32 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 78899999999999999865
No 216
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=5.5e-05 Score=71.63 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999876
No 217
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.69 E-value=9.9e-05 Score=72.05 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=40.6
Q ss_pred cccCCCCCCCC-CCCeeEeEEEEeecc-----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 6 FSSESGYGPQR-SGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 6 ~~~~~~~~~~~-~~~m~i~~i~i~nf~-----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..|++|.-. ..++.++.+.+. |+ -+.+..+.|.|| +++|+|+||||||||+.+|.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 68 (257)
T cd03288 5 ISGSSNSGLVGLGGEIKIHDLCVR-YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF 68 (257)
T ss_pred ecCCCCcccccCCceEEEEEEEEE-eCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34445566554 335667777664 22 246777888886 88899999999999999985
No 218
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.69 E-value=6.1e-05 Score=76.49 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=33.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|... ++.-+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia 51 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA 51 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5666666553 222235667777765 88999999999999999987
No 219
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.69 E-value=0.13 Score=56.19 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003532 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQR 228 (812)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~ 228 (812)
+|..+.....+..+...+..+...+..+...+.++...-..-..++..+..
T Consensus 93 ~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~ 143 (560)
T PF06160_consen 93 KYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKE 143 (560)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555666666666666665555554444444444444433
No 220
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.7e-05 Score=73.35 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788886 88899999999999999986
No 221
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=7e-05 Score=67.98 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+..|.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88899999999999999874
No 222
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.69 E-value=5.7e-05 Score=77.58 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCeeEeEEEEeeccc---ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~~---~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+|+.++.|.+. |+. +.+..+.+.+| +++|+||||||||||+..|.
T Consensus 2 ~~L~~~nls~~-y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~La 50 (402)
T PRK09536 2 PMIDVSDLSVE-FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAIN 50 (402)
T ss_pred ceEEEeeEEEE-ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 35666777653 332 35666777776 78899999999999999986
No 223
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=6.3e-05 Score=73.99 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=34.1
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..+..|.+. +-..+.+..++|.+| +.+|+||||||||||+.+|.=
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5666666653 111246677788887 788999999999999999864
No 224
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=8.9e-05 Score=72.81 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCCCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 16 ~~~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+-.+..+..|.+. +..-+.+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3556777777763 212247777888886 88999999999999999985
No 225
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=5.9e-05 Score=73.64 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788787 88899999999999999876
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.69 E-value=2.6e-05 Score=74.15 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.7
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566777776 88899999999999999986
No 227
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.68 E-value=3.7e-05 Score=72.33 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.9
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+.|.+| +++|+||||||||||+..|.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667888876 88899999999999999876
No 228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=7.9e-05 Score=67.49 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=27.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+.+..++|.+| +++|+||||||||||+.+|.=
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 46677888776 889999999999999999853
No 229
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=6.8e-05 Score=74.16 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=34.5
Q ss_pred CeeEeEEEEeecc-----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~-----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.|..|.+. |+ .+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~i~~l~~~-~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 5 IVEFKHVSFT-YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred eEEEEEEEEE-cCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 5667777764 22 346777888886 88999999999999999985
No 230
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=6.6e-05 Score=73.20 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=33.4
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..+..|.+. |+ .+.+..++|.+| +.+|+|+||||||||+.+|.=
T Consensus 4 ~l~~~~l~~~-~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 4 IISAKDVHLS-YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eEEEEeeEEE-ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4566666664 22 235667777776 788999999999999999874
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.68 E-value=8.1e-05 Score=67.56 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 46667788776 88899999999999999986
No 232
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=5e-05 Score=71.85 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46777888776 88899999999999999886
No 233
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.68 E-value=7.6e-05 Score=77.75 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCCCCCCCeeEeEEEEeecc-----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 11 GYGPQRSGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 11 ~~~~~~~~~m~i~~i~i~nf~-----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+|..|...|..++.|.+..=+ -+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 13 ~y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLa 71 (549)
T PRK13545 13 KYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA 71 (549)
T ss_pred eccccccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHh
Confidence 455555557777777654211 135566777776 78899999999999999975
No 234
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.67 E-value=4e-05 Score=72.94 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999986
No 235
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=8.3e-05 Score=72.97 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=33.4
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ -+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 11 ~l~i~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 11 TFALRNVSFR-VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred eEEEeeEEEE-ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 5677777653 22 246677788776 88899999999999999876
No 236
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.6e-05 Score=73.94 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.2
Q ss_pred CeeEeEEEEe---ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE---NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~---nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. +..-|.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555555542 111246667788776 88899999999999999875
No 237
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.67 E-value=4e-05 Score=72.06 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999875
No 238
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.67 E-value=5.6e-05 Score=72.96 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHc
Confidence 46677888776 88899999999999999875
No 239
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=6.6e-05 Score=74.21 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.5
Q ss_pred CeeEeEEEEeecc---------cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---------~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. |+ .+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~-~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 4 MIKCKNVSYK-YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred eEEEeeeEEE-cCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566666654 32 346667788887 88899999999999999986
No 240
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.4e-05 Score=74.46 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=31.7
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..+..|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455555543 111235666777776 88899999999999999986
No 241
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=7.1e-05 Score=74.18 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35667788887 89999999999999999986
No 242
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.9e-05 Score=73.02 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 4 KMESKNLNLW-YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEEEEEeEEE-ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4556666553 22 246667788776 88899999999999999986
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.67 E-value=3.5e-05 Score=74.64 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=32.4
Q ss_pred eeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..|.+.. .+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 1 ~~~~~l~~~~--~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 1 MQLNDVAVST--RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred Ccccccchhc--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 3455555542 467788888876 88899999999999999875
No 244
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.67 E-value=7.3e-05 Score=71.61 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
+.+..++|.+| +++|+||||||||||+.+|.=.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46677788776 88899999999999999987444
No 245
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=7.5e-05 Score=72.85 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=34.2
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 5 IITSSDVHLF-YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred eEEEEeEEEE-ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667777664 22 246677788887 89999999999999999986
No 246
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.66 E-value=7e-05 Score=73.19 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+. +..-+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4666666654 112246677788776 77899999999999999876
No 247
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.66 E-value=7.1e-05 Score=70.75 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=34.5
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..+.+. +...|.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHh
Confidence 5777777763 112246777888876 88899999999999999985
No 248
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=8.1e-05 Score=73.27 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.7
Q ss_pred CeeEeEEEEee-cc--cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN-FM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n-f~--~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+.- .+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 56677777642 11 246777888886 88899999999999999986
No 249
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=6.7e-05 Score=72.77 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88899999999999999986
No 250
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.66 E-value=6e-05 Score=73.98 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=32.0
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..|..|.+. +...+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 3445555543 111235667788787 88899999999999999875
No 251
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.65 E-value=7e-05 Score=73.45 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.9
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~nl~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 4 IIRVEKLAKT-FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred EEEEeeEEEE-eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4556666553 22 246677788776 88899999999999999886
No 252
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.65 E-value=8.1e-05 Score=71.15 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999875
No 253
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=7.9e-05 Score=72.12 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888776 88899999999999999885
No 254
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=8.3e-05 Score=72.72 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.3
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
|+.+..|.+. +-.-|.+..++|.+| +++|+|+||||||||+..|.-.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556666553 112246677888887 8889999999999999998743
No 255
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=8.8e-05 Score=73.12 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=33.3
Q ss_pred CeeEeEEEEee--c-ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN--F-MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n--f-~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.- . ..+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566666542 1 1346777888887 88899999999999999885
No 256
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.64 E-value=7.7e-05 Score=76.48 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.3
Q ss_pred eeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.|..|... +..-+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 455555543 111235666777775 88999999999999999986
No 257
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=7.9e-05 Score=75.72 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred CeeEeEEEEeecc-------cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~-------~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. |+ -+.+..++|.+| +++|+||||||||||+..|.
T Consensus 1 mi~i~~l~~~-y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 1 MIELKNISKV-FPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred CEEEEeEEEE-eCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4556666553 22 246667788886 88899999999999999875
No 258
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.64 E-value=6.6e-05 Score=72.93 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667778787 88899999999999999975
No 259
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=8.1e-05 Score=73.25 Aligned_cols=45 Identities=29% Similarity=0.303 Sum_probs=33.7
Q ss_pred CeeEeEEEEee----cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n----f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+.- ..-|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT 56 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 55666666531 11346777888886 88999999999999999875
No 260
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.64 E-value=4.6e-05 Score=70.42 Aligned_cols=28 Identities=36% Similarity=0.416 Sum_probs=23.9
Q ss_pred eEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 36 LQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 36 ~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..|+|++| +++|+||||+||||++..|.
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHH
Confidence 35667666 88999999999999999986
No 261
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.64 E-value=9.6e-05 Score=72.77 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=33.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..+.+. +-..|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5666666654 112246677788776 88899999999999999986
No 262
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.63 E-value=5e-05 Score=72.42 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88999999999999999986
No 263
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=9e-05 Score=73.80 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 46677777776 88999999999999999987
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.63 E-value=5.1e-05 Score=68.14 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888886 88999999999999999975
No 265
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=4.7e-05 Score=72.47 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 35667788776 88899999999999999976
No 266
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.63 E-value=8.2e-05 Score=72.54 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+..|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 78899999999999999985
No 267
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.63 E-value=8.8e-05 Score=70.28 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788886 77899999999999999876
No 268
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=9.1e-05 Score=73.06 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=33.5
Q ss_pred CeeEeEEEEee--c--ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN--F--MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n--f--~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..+.+.- . ..+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35566666632 1 1346677888887 88999999999999999886
No 269
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.63 E-value=6.4e-05 Score=59.88 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.++..+++.+| +++|.||+||||||++.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35566777774 78899999999999999975
No 270
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=9.1e-05 Score=73.12 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=33.9
Q ss_pred CeeEeEEEEee-----cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN-----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n-----f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+.- +..+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLID 54 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 56666666641 11346777788776 88999999999999999885
No 271
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00011 Score=72.66 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=32.9
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+.--+ -+.+..+++.+| +++|+|+||||||||+.+|.
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555555553111 246777888887 88899999999999999986
No 272
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.61 E-value=9.9e-05 Score=75.39 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=32.2
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..|..|... ++.-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA 61 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 4555555553 111235667777775 88999999999999999876
No 273
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.61 E-value=9.8e-05 Score=71.36 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 19 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred eeceEEEecCCCEEEEEeCCCCCHHHHHHHHh
Confidence 46777888776 88999999999999999876
No 274
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00011 Score=73.08 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 46777888887 88999999999999999986
No 275
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.60 E-value=0.0001 Score=71.01 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=27.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+++|.
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888887 88899999999999999986
No 276
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.0001 Score=68.19 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 35666777776 88899999999999999975
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.60 E-value=6.4e-05 Score=68.79 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|.||||||||||+..|.
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 56677888886 88899999999999999875
No 278
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.60 E-value=9.3e-05 Score=72.63 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999875
No 279
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00011 Score=71.65 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=32.8
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. +..-+.+..+.|.+| +++|+||||||||||+..|.
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN 51 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455555553 111246777888886 88899999999999999975
No 280
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=5.8e-05 Score=74.46 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.7
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..++|.+| ++++.|||||||||+|.+|.
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 6677888887 99999999999999999876
No 281
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.00011 Score=69.36 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=24.7
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 556677776 88899999999999999885
No 282
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.59 E-value=7.1e-05 Score=70.90 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 46677888876 88999999999999999874
No 283
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00011 Score=74.50 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=33.3
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|... ++.-+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 5566666653 222245667778776 88999999999999999975
No 284
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00011 Score=72.81 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=33.0
Q ss_pred CeeEeEEEEeec-------ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF-------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf-------~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.-= ..+.+..+++.+| +++|+||||||||||+..|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 455566655321 1346777788776 88999999999999999886
No 285
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.59 E-value=0.0001 Score=72.31 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 78899999999999999875
No 286
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.58 E-value=6.5e-05 Score=71.30 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888886 78899999999999999986
No 287
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.58 E-value=0.00011 Score=70.71 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred ecceeeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888886 88899999999999999865
No 288
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.58 E-value=6.4e-05 Score=72.03 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=25.9
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4567788776 88899999999999999987
No 289
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.57 E-value=0.086 Score=51.04 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003532 189 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQR 228 (812)
Q Consensus 189 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~ 228 (812)
+.+...+..+..++..........+.+.+....++.....
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~ 116 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ 116 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444444444433
No 290
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00013 Score=71.71 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=25.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+| +.+|.|||||||||+|..|.
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456666665 99999999999999999987
No 291
>PRK09039 hypothetical protein; Validated
Probab=97.57 E-value=0.017 Score=58.18 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003532 637 YDEKIKDLERAALHVQ 652 (812)
Q Consensus 637 l~~~l~~l~~~i~~l~ 652 (812)
.+.++..++.+|..+-
T Consensus 51 ~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 51 KDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 292
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.57 E-value=8.2e-05 Score=71.60 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999986
No 293
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.56 E-value=9.3e-05 Score=69.73 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999986
No 294
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.56 E-value=0.00012 Score=68.31 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| ++.|+|+||||||||+.+|.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999875
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.56 E-value=8e-05 Score=68.04 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999975
No 296
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.18 Score=54.20 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003532 204 KGDALVLELEATIKPTEKELSELQRKIRNM-EHVEEITQDLQRLKKKL 250 (812)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (812)
.+.-.++.++.....+.-+.+.++.++... .....+.++...++.++
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333321 22333344444444443
No 297
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.55 E-value=7.7e-05 Score=69.70 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=27.6
Q ss_pred ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 31 MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 31 ~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..|-+.+|.+++| +++|+||||+||||++.+|.
T Consensus 17 ~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 17 ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CceEeeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 3455566777776 99999999999999999997
No 298
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00013 Score=74.22 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=32.5
Q ss_pred CeeEeEEEEe---ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE---NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~---nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|... ++..+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~ia 51 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA 51 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3556666553 112235667778776 88999999999999999985
No 299
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.55 E-value=0.00013 Score=69.60 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 36667788887 88899999999999999876
No 300
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00013 Score=71.14 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=32.1
Q ss_pred eEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 21 TITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 21 ~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
.+..|.+. +...+.+.++.|.+| +++|+||||||||||+++|.=
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45555543 111346777888887 888999999999999998763
No 301
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00012 Score=71.50 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=25.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.+.+| +++|+||||+|||||+.+|.
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35556777776 88899999999999999975
No 302
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.54 E-value=0.051 Score=47.59 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 383 KELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (812)
Q Consensus 383 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (812)
..+..++-....-+......+.+-......+...+.+.+.-...++.++..|...+
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444445555555555444
No 303
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00014 Score=71.69 Aligned_cols=45 Identities=20% Similarity=0.145 Sum_probs=33.7
Q ss_pred CeeEeEEEEeec-----ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF-----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf-----~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|.+.-- ..+.+..+++.+| +++|+|+||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 566666666421 1346667777776 88899999999999999876
No 304
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.53 E-value=8.1e-05 Score=69.35 Aligned_cols=32 Identities=44% Similarity=0.536 Sum_probs=27.5
Q ss_pred cccceEEEeCCc--eEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIELGEW--VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f~~g--~~~I~G~NgsGKStl~dai~ 63 (812)
.|-+..+++++| +.+|+||||+||||++..|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 455667888887 78999999999999999987
No 305
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.53 E-value=8.4e-05 Score=71.13 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=25.3
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556777776 88899999999999999975
No 306
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00014 Score=72.02 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=34.0
Q ss_pred CeeEeEEEEee---cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n---f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+.- ..-+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~ 53 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLN 53 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45666666642 11236777888887 88999999999999999985
No 307
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00014 Score=69.88 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=27.6
Q ss_pred cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
-|.+..+.|.|| +++|+||||+|||||+.+|.
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA 47 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 357777888887 88899999999999999985
No 308
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00016 Score=65.30 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=24.7
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+..+++.+| +.+|+||+|||||||+.+|..
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 344556665 889999999999999999876
No 309
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.52 E-value=0.00017 Score=68.78 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..++|.+| +++|+||||||||||+.+|.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999885
No 310
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00014 Score=70.95 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+.+..++|.+| +.+|+||||||||||+.+|.-
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35667788776 888999999999999999863
No 311
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.52 E-value=0.00014 Score=71.45 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+.++.|.+| +++|+||||||||||+.+|.
T Consensus 29 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999986
No 312
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00014 Score=71.19 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +.+|+|+||||||||+.+|.
T Consensus 23 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (261)
T PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN 54 (261)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 35566777776 88899999999999999987
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00015 Score=66.69 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=25.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+| +++|+||+|+|||||+..|.
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566666665 88999999999999999876
No 314
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00016 Score=72.04 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 27 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666778786 88999999999999999986
No 315
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.51 E-value=0.00019 Score=67.49 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.3
Q ss_pred eeEeEEEEe-e---cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLE-N---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~-n---f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+. + ...|.+..+.|.+| +++|+||||+|||||+.+|.
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF 55 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 566666664 1 12346777888886 88899999999999999885
No 316
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.51 E-value=0.00017 Score=66.89 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 45667788776 88899999999999999985
No 317
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.51 E-value=0.00011 Score=68.64 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=26.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 46667788887 88899999999999999975
No 318
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.50 E-value=0.027 Score=63.81 Aligned_cols=29 Identities=41% Similarity=0.468 Sum_probs=22.7
Q ss_pred ceEEEeCC--ceEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGE--WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~--g~~~I~G~NgsGKStl~dai~ 63 (812)
+.+|.+++ .+.+|+|||++||||+|..|.
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHH
Confidence 34455554 377899999999999999874
No 319
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.50 E-value=0.071 Score=48.32 Aligned_cols=86 Identities=7% Similarity=0.139 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 318 KDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLS 397 (812)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (812)
+.....++..++..+.............+.....++..+...+..+..-..+..-.+..++...+..+...+......+.
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443322111222234455555555555555555555
Q ss_pred HHHHHH
Q 003532 398 RMKEED 403 (812)
Q Consensus 398 ~l~~~~ 403 (812)
.+...+
T Consensus 143 ~Lek~l 148 (194)
T PF15619_consen 143 ELEKQL 148 (194)
T ss_pred HHHHHH
Confidence 555443
No 320
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.50 E-value=0.00015 Score=70.67 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=31.7
Q ss_pred eeEeEEEEeecc--cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLENFM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~nf~--~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..+..|.+. |+ -+.+..++|.+| +++|+||||||||||+..|.
T Consensus 5 l~~~~l~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 5 IELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred EEEeCeEEE-eccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455555543 22 246677788876 88899999999999999875
No 321
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.50 E-value=9.7e-05 Score=69.34 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+..|.
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88999999999999999874
No 322
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.50 E-value=9.8e-05 Score=70.18 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=27.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46667788776 889999999999999999763
No 323
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=9.8e-05 Score=68.93 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||++.|.
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhc
Confidence 35566777776 88899999999999999865
No 324
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.50 E-value=0.00017 Score=69.65 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88999999999999999987
No 325
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.0001 Score=70.82 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999985
No 326
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.49 E-value=0.00018 Score=68.07 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=25.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4566777775 88899999999999999986
No 327
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00019 Score=69.33 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999986
No 328
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.48 E-value=0.00019 Score=72.40 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| ++.|+||||||||||+.+|.
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~ 52 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666777776 88899999999999999986
No 329
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.48 E-value=0.00018 Score=70.34 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=26.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 36667778776 88899999999999999975
No 330
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00019 Score=72.64 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=34.0
Q ss_pred CeeEeEEEEee------cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLEN------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~n------f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..++.|.+.- ...+.+..+++.+| +.+|+|+||||||||+.+|.-
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 45666666641 12346677788777 788999999999999999863
No 331
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0001 Score=72.33 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788776 88899999999999999875
No 332
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.48 E-value=0.0001 Score=70.83 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=25.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..++|.+| +.+|+||||||||||+.+|.
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5556777776 88899999999999999975
No 333
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00016 Score=70.60 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.5
Q ss_pred cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+.+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 356777888887 88899999999999999885
No 334
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.48 E-value=0.25 Score=54.03 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003532 351 NRVKGLEQQVHDIQ 364 (812)
Q Consensus 351 ~~~~~~~~~l~~~~ 364 (812)
.++..+......+.
T Consensus 351 ~~l~~l~~~~~~~~ 364 (560)
T PF06160_consen 351 KQLKELEKRYEDLE 364 (560)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444333333
No 335
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00019 Score=68.98 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+.+++|.+| +++|+||||+||||++.+|.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~ 46 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA 46 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 56777888886 88899999999999999874
No 336
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.47 E-value=0.00019 Score=77.82 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=32.8
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|... +..-+++..++|.+| +++|+||||||||||+.+|.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 58 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA 58 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555542 111246677788887 88999999999999999976
No 337
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.47 E-value=0.00021 Score=68.02 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788777 88899999999999999985
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.47 E-value=9e-05 Score=66.60 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.3
Q ss_pred EEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 38 IELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 38 i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.|.+| +++|+||||||||||+..|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHH
Confidence 466665 88899999999999999876
No 339
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.47 E-value=0.00012 Score=73.32 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88899999999999999876
No 340
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0003 Score=72.10 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+| +.+|+||||||||||+.+|.
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLA 66 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4566677665 88899999999999999877
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=97.46 E-value=0.00018 Score=80.14 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 16 ~~~~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
...|..+..|.+. +...|.+..+.+.+| ...|+|||||||||||.+|.
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 3444445555443 111245667777786 88999999999999999986
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.46 E-value=0.00015 Score=80.76 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=32.3
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|... +..-|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriia 50 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN 50 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 4455555542 111246777888887 88899999999999999876
No 343
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.46 E-value=0.25 Score=53.46 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003532 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFA 705 (812)
Q Consensus 639 ~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 705 (812)
.++.+.+..+.....++..+......|+.++...+..+..++.........+..+..++..+..++.
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555554444445555555444444443
No 344
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00012 Score=71.33 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.5
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.+.|| +++|+||||||||||+.+|.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566777776 78899999999999999985
No 345
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00012 Score=70.55 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +.+|+||||||||||+..|.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888887 88899999999999999875
No 346
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.45 E-value=0.00016 Score=62.11 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred cccceEEEeC----C-ceEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIELG----E-WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f~----~-g~~~I~G~NgsGKStl~dai~ 63 (812)
+|+...+.|+ + ..+.|.||+||||||+++.|.
T Consensus 10 ~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 10 SYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred eeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHH
Confidence 3555555553 3 488899999999999999886
No 347
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.45 E-value=0.00015 Score=79.54 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=34.7
Q ss_pred CeeEeEEEEeecc----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~i~~~nls~~-~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~ 52 (552)
T TIGR03719 4 IYTMNRVSKV-VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA 52 (552)
T ss_pred EEEEeeEEEe-cCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5666666653 22 357778888887 88999999999999999987
No 348
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00024 Score=66.77 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=26.5
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
.+..+.+.+| .++|+|+||||||||+..+.-++
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 4567777877 99999999999999988765433
No 349
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.44 E-value=0.00013 Score=69.61 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 46677888776 88899999999999999886
No 350
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.43 E-value=0.071 Score=46.52 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 408 EKLSKEKNEIRRISDEIEDYDKKCREIRSE 437 (812)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 437 (812)
..+..+...++.+...+.........+...
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~e 194 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKE 194 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHH
Confidence 333344444444444444333333333333
No 351
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00033 Score=70.28 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.8
Q ss_pred CCeeEeEEEEee--c-----ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLEN--F-----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~n--f-----~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..++.|.+.- - ..+.+.++.+.+| +++|+|+||||||||+.+|.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 356677776641 0 1356777888887 88899999999999999986
No 352
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.42 E-value=0.00017 Score=79.19 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 23 l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~ 54 (556)
T PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA 54 (556)
T ss_pred eeCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 35667788876 88899999999999999987
No 353
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.043 Score=51.39 Aligned_cols=55 Identities=4% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRM 691 (812)
Q Consensus 637 l~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (812)
+......++.+|..+..++.++..++.+++.++...+.++..++.++..++.+|.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555554444443
No 354
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.42 E-value=3.3e-05 Score=77.97 Aligned_cols=24 Identities=54% Similarity=0.846 Sum_probs=0.0
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhc
Q 003532 44 VNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
+|+|+|+||||||||++||.+++.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 689999999999999999998875
No 355
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00014 Score=68.51 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=24.8
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
.+..+++..| +..++|||||||||++..|.=
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 5555566554 888999999999999999873
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.40 E-value=0.00021 Score=77.39 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=25.7
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 50 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALA 50 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566777776 88899999999999999876
No 357
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.40 E-value=0.29 Score=53.03 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Q 003532 260 RQLKEQTLKIEKLKDRIPRCQAKID 284 (812)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (812)
..+..++.-+......+..+..+.+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 358
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.40 E-value=0.31 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003532 376 SEIEAKLKELQCEIDAANITLS 397 (812)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~~~ 397 (812)
+.++.++..+..++..++..+.
T Consensus 497 e~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 497 ESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444444433
No 359
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00024 Score=69.14 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+||||||||||++.|.
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999876
No 360
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.38 E-value=0.00016 Score=69.22 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 46778888886 88899999999999999887
No 361
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00019 Score=78.09 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=33.5
Q ss_pred CeeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..+..|.......+++..+.+.+| +++|+||||||||||+.+|.-
T Consensus 265 ~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 265 VFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred EEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555555543112246777888876 888999999999999999873
No 362
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00019 Score=62.97 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=24.6
Q ss_pred EEEeC--C-ceEEEEcCCCCChhHHHHHHHHHhc
Q 003532 37 QIELG--E-WVNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 37 ~i~f~--~-g~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
++.|. . .++.|.|||||||||++.-|..+|-
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 35553 3 4888999999999999999886654
No 363
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.37 E-value=0.00023 Score=77.20 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=31.9
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..++.|... +...+.+..++|.+| +++|+||||||||||+.+|.-
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 52 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG 52 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3445555432 111235667777776 888999999999999998873
No 364
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00025 Score=77.49 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=32.4
Q ss_pred eeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 20 GTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 20 m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
..++.|.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 2 l~i~~ls~~-~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 2 LSTANITMQ-FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILG 48 (530)
T ss_pred EEEEEEEEE-eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555543 22 246777888886 88899999999999999987
No 365
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00033 Score=70.49 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=35.2
Q ss_pred CCCCeeEeEEEEee--c--ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 16 RSGAGTITRVRLEN--F--MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 16 ~~~~m~i~~i~i~n--f--~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
...+..+..+.+.= - ..+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34456666666531 1 1246777788886 88999999999999999985
No 366
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.36 E-value=0.068 Score=44.92 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 718 EISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVE 752 (812)
Q Consensus 718 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (812)
.+..++..+..+...+...+...+.++.++.....
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333334444444333333333333333
No 367
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.35 E-value=0.00035 Score=68.24 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
+.+..+.+.+| +++|+|+||||||||+.+|.-.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 56777888776 88899999999999999986443
No 368
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.34 E-value=0.00022 Score=77.29 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.|... +...+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 307 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 5555555442 111235666777776 88999999999999999976
No 369
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00029 Score=71.02 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.3
Q ss_pred CeeEeEEEEe--e----cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 19 AGTITRVRLE--N----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 19 ~m~i~~i~i~--n----f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
|..++.|.+. + ..-+.+..+++.+| +..|+|+||||||||+.+|.=
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 3566666553 1 11246677788877 888999999999999999863
No 370
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00027 Score=76.84 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 36667788787 888999999999999999873
No 371
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.23 Score=50.16 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003532 200 NHLNKGDALVLELEATIKPTEKELSELQRK 229 (812)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~ 229 (812)
.+++.....+..+++.+....++...++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~ 67 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQ 67 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444433
No 372
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0003 Score=76.54 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 35667778887 88999999999999999975
No 373
>PRK11281 hypothetical protein; Provisional
Probab=97.29 E-value=0.27 Score=57.41 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003532 350 VNRVKGLEQQVHDIQE 365 (812)
Q Consensus 350 ~~~~~~~~~~l~~~~~ 365 (812)
..++..++..++.+.+
T Consensus 233 ~~~~~~~~~~~~~lq~ 248 (1113)
T PRK11281 233 TARIQRLEHQLQLLQE 248 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333443333333
No 374
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00036 Score=76.35 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=32.8
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. +-.-|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5556666543 111246667788776 88999999999999999986
No 375
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00039 Score=77.29 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| +++|+|||||||||||..|.
T Consensus 17 l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888886 88899999999999999876
No 376
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.26 E-value=0.00037 Score=76.46 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..+..|... |+ .|.+..++|.+| +++|+||||||||||+.+|.
T Consensus 323 ~~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 371 (556)
T PRK11819 323 KVIEAENLSKS-FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMIT 371 (556)
T ss_pred eEEEEEeEEEE-ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777777764 22 346777888876 88899999999999999987
No 377
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.25 E-value=0.00031 Score=62.35 Aligned_cols=30 Identities=37% Similarity=0.619 Sum_probs=23.8
Q ss_pred cceEEEeCC-ceEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGE-WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~-g~~~I~G~NgsGKStl~dai~ 63 (812)
.+.+++... .|.+|+|.|||||||++.+|.
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~ia 53 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIA 53 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhh
Confidence 344555544 488899999999999999986
No 378
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.25 E-value=0.00046 Score=69.59 Aligned_cols=45 Identities=27% Similarity=0.252 Sum_probs=33.5
Q ss_pred CeeEeEEEEee------cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n------f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.|.+.- +.-+.+..+++.+| +..|+|+||||||||+.+|.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM 63 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 55666666541 11236667788776 88899999999999999986
No 379
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.24 E-value=0.00042 Score=75.34 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 17 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~ 48 (500)
T TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILS 48 (500)
T ss_pred ecceEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999986
No 380
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.24 E-value=0.00034 Score=60.79 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=25.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
.+..|.+.+| +..|+||+||||||++..|+-.
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 3445666665 8889999999999999887643
No 381
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.23 E-value=0.00032 Score=67.53 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.4
Q ss_pred eCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 40 LGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 40 f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+| +++|+||||||||||+.+|.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444 88999999999999999875
No 382
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.23 E-value=0.00051 Score=76.60 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=33.3
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. |+ -|.+.++.|.+| +++|+||||||||||+.+|.
T Consensus 319 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~ 366 (635)
T PRK11147 319 VFEMENVNYQ-IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML 366 (635)
T ss_pred eEEEeeeEEE-ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 5666666653 22 246677788887 88899999999999999886
No 383
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.23 E-value=0.00053 Score=69.85 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+| +++|+||||||||||+.+|.
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566777765 88999999999999999986
No 384
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00034 Score=66.24 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=24.1
Q ss_pred ceEEEeCCceEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEWVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g~~~I~G~NgsGKStl~dai~ 63 (812)
+..+++.+.+.+|+||||||||||+.+|.
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHh
Confidence 45566655788899999999999999875
No 385
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.22 E-value=0.0004 Score=76.22 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=33.4
Q ss_pred CeeEeEEEEee--cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN--FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n--f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.+..|.+.- ..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 56666665531 11246677788776 88899999999999999986
No 386
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.22 E-value=0.00036 Score=59.12 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.0
Q ss_pred EEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 37 QIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 37 ~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
.+.+++| +.+|+||+|+||||++.++..+.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3444565 88999999999999999987543
No 387
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00056 Score=76.08 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=32.9
Q ss_pred CeeEeEEEEeecc---cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~---~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|... |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 312 ~l~~~~l~~~-y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~ 359 (638)
T PRK10636 312 LLKMEKVSAG-YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred eEEEEeeEEE-eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566666542 32 236667778776 88899999999999999987
No 388
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.22 E-value=0.0003 Score=71.76 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=26.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..++|.+| +++|+||||||||||+.+|.
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~ 71 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVN 71 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35667778776 88999999999999999986
No 389
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00056 Score=69.84 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=23.7
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..++|.+| +++|+||||||||||+.+|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345556665 88999999999999999876
No 390
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.20 E-value=0.5 Score=51.62 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHhhh
Q 003532 774 AAEKELMEIEKNLQTSESVS 793 (812)
Q Consensus 774 ~~~~~~~~~~~~~~~l~~~~ 793 (812)
++++.+......+..+.++.
T Consensus 955 eLEq~L~~eR~rL~elRK~h 974 (980)
T KOG0980|consen 955 ELEQSLQAERARLGELRKQH 974 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00046 Score=74.86 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=32.5
Q ss_pred CeeEeEEEEe--ecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~--nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|... +-.-+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILS 51 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555543 111246677788886 88999999999999999976
No 392
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.19 E-value=0.0004 Score=75.40 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=27.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 57788888876 88899999999999999886
No 393
>PLN03073 ABC transporter F family; Provisional
Probab=97.18 E-value=0.0007 Score=75.65 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCeeEeEEEEeecc----cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 18 GAGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 18 ~~m~i~~i~i~nf~----~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|..+..|.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 507 ~~L~~~~ls~~-y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~ 556 (718)
T PLN03073 507 PIISFSDASFG-YPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS 556 (718)
T ss_pred ceEEEEeeEEE-eCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 45667777664 21 256677788776 88999999999999999887
No 394
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.16 E-value=0.00038 Score=66.19 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=23.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHH-HHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAIL-TAL 62 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~-dai 62 (812)
++..+++.+| +++|+|+||||||||+ ..|
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 6667777776 8889999999999995 444
No 395
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.16 E-value=0.53 Score=51.09 Aligned_cols=6 Identities=67% Similarity=0.900 Sum_probs=3.1
Q ss_pred CChhHH
Q 003532 53 SGKSAI 58 (812)
Q Consensus 53 sGKStl 58 (812)
+|++++
T Consensus 125 ~~~~~~ 130 (594)
T PF05667_consen 125 VGKSAL 130 (594)
T ss_pred HHHHHH
Confidence 456544
No 396
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.15 E-value=0.00063 Score=68.56 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +.+|+|+||||||||+.+|.
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 35667777776 78899999999999999986
No 397
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.15 E-value=0.00054 Score=74.82 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=33.0
Q ss_pred CeeEeEEEEee-------cccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLEN-------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~n-------f~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+.- ...+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 331 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA 331 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 56666665531 11245667777776 88999999999999999987
No 398
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00038 Score=71.59 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=25.4
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..++|.+| +++|+||||||||||+.+|.
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 4556677776 88999999999999999976
No 399
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.14 E-value=0.00056 Score=74.82 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=33.3
Q ss_pred CeeEeEEEEeecc-------cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~-------~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~~~~l~~~-~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~ 56 (529)
T PRK15134 5 LLAIENLSVA-FRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL 56 (529)
T ss_pred eEEEeceEEE-ecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 5566666553 22 246677788776 88999999999999999987
No 400
>PRK11281 hypothetical protein; Provisional
Probab=97.14 E-value=0.8 Score=53.71 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003532 343 TSYMQKMVNRVKGLEQQVHD 362 (812)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~ 362 (812)
..++..++..+..++..+..
T Consensus 233 ~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 233 TARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 401
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.13 E-value=0.00047 Score=66.20 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=25.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+.+++|..| +++|+|++|||||||+..+.
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHH
Confidence 5677777765 89999999999999997664
No 402
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00087 Score=67.51 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=25.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +..|+|+||||||||+.+|.
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHH
Confidence 35666777775 78899999999999999986
No 403
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.13 E-value=0.00044 Score=70.75 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=24.0
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..+.|.+| +++|+||||||||||+.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445566675 88999999999999999875
No 404
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.12 E-value=0.00032 Score=66.72 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred EeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 39 ELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 39 ~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.|.+| +++|+||||||||||+.+|.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 45565 88999999999999999976
No 405
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00051 Score=67.98 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=24.9
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+++.+| +.++.||+||||||+|.+|.
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 4556666776 88899999999999999876
No 406
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00045 Score=75.11 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=32.5
Q ss_pred CeeEeEEEEeec------ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf------~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..|.+. | .-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 259 ~l~~~~l~~~-~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 259 ILEVRNLTAW-DPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred eEEEecCccc-cccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHh
Confidence 4556666542 2 1245667777776 88899999999999999986
No 407
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.10 E-value=0.39 Score=48.41 Aligned_cols=23 Identities=0% Similarity=0.069 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003532 228 RKIRNMEHVEEITQDLQRLKKKL 250 (812)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~ 250 (812)
.+...++.+-.+..+..|..+..
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~ 144 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRM 144 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555554443
No 408
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.10 E-value=0.00055 Score=74.33 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=27.3
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHh
Confidence 57788888886 88899999999999999876
No 409
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.09 E-value=0.82 Score=52.08 Aligned_cols=7 Identities=0% Similarity=-0.202 Sum_probs=3.5
Q ss_pred HhcCCcC
Q 003532 65 AFGCRAK 71 (812)
Q Consensus 65 ~l~~~~~ 71 (812)
+|||.+|
T Consensus 274 MlyG~TP 280 (1317)
T KOG0612|consen 274 MLYGETP 280 (1317)
T ss_pred HHcCCCc
Confidence 3455554
No 410
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.08 E-value=0.00048 Score=69.89 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.+| +++|+||||||||||+.+|.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~ 40 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN 40 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 35667778776 88999999999999999876
No 411
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00046 Score=74.78 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=33.3
Q ss_pred CeeEeEEEEeecccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..++.+.+.+-.-+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 250 ~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 250 ILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred EEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc
Confidence 4455555554211257777888887 88999999999999999886
No 412
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.08 E-value=0.00046 Score=75.02 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence 35566777776 88899999999999999986
No 413
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00078 Score=61.65 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
+++..+++.+| +.+++||+||||||+|.-|.-+
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 45666777665 8899999999999999988643
No 414
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.07 E-value=0.00062 Score=74.35 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
+.+..+.|.+| +++|+||||||||||+.+|.-.
T Consensus 16 l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 46677788776 8899999999999999998743
No 415
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.05 E-value=0.69 Score=50.49 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003532 238 EITQDLQRL 246 (812)
Q Consensus 238 ~~~~~~~~~ 246 (812)
.+...+..+
T Consensus 54 eLE~sL~eL 62 (617)
T PF15070_consen 54 ELERSLSEL 62 (617)
T ss_pred HHHHHHHHH
Confidence 333333333
No 416
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00068 Score=58.13 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChhHHHHHHHHH
Q 003532 43 WVNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 43 g~~~I~G~NgsGKStl~dai~~~ 65 (812)
.+..|+|.+||||||++.+|.|+
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhh
Confidence 37889999999999999999874
No 417
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00082 Score=74.75 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=33.0
Q ss_pred CeeEeEEEEeecc-------cccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHH
Q 003532 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 19 ~m~i~~i~i~nf~-------~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~ 65 (812)
|..+..|.+. |+ .+.+..++|.+| +++|+||||||||||+.+|.-.
T Consensus 12 ~l~v~~l~~~-y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 12 VLAVENLNIA-FMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred eEEEeceEEE-ecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4556666542 22 235666777775 8889999999999999998733
No 418
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.01 E-value=0.25 Score=44.82 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 003532 417 IRRISDEIEDY 427 (812)
Q Consensus 417 ~~~l~~~~~~~ 427 (812)
+..+..++..+
T Consensus 173 ~~~l~~ei~~L 183 (194)
T PF15619_consen 173 VKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 419
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.98 E-value=0.64 Score=48.89 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 404 SALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQ 442 (812)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 442 (812)
..+..++......+.++...+..- ..++.+..++.-|+
T Consensus 320 ~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 320 SALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 333333333333333333333322 33444444444443
No 420
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.97 E-value=0.00078 Score=73.71 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=26.7
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 302 l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 333 (529)
T PRK15134 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALL 333 (529)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667777776 88999999999999999987
No 421
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0014 Score=59.94 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred EeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 39 ELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 39 ~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
...|| --+|+||||||||||+.-+.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHh
Confidence 33444 56799999999999988775
No 422
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.94 E-value=1.3 Score=51.86 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 414 KNEIRRISDEIEDYDKKCREIRSEI 438 (812)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~~l~~~l 438 (812)
..+....+..+..+.+....++.++
T Consensus 285 ~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 285 ASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444443
No 423
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.00067 Score=65.62 Aligned_cols=24 Identities=42% Similarity=0.403 Sum_probs=20.9
Q ss_pred eCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 40 LGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 40 f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+| ++.|+||||||||||+.+|.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 5565 88999999999999998876
No 424
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00095 Score=72.32 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 14 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~ 45 (491)
T PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLF 45 (491)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 46677788776 88899999999999999976
No 425
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.00086 Score=61.41 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=23.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+++.+| ...|+|+||||||||+..|.
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 4455555566 55699999999999998876
No 426
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0016 Score=59.48 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+++.+| ...|+|++|||||||..+|.
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 6777888887 44599999999999998875
No 427
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=96.90 E-value=0.00083 Score=68.02 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=30.1
Q ss_pred eEeEEEEeecccc--------cceEEEeCCceEE-EEcCCCCChhHHHHHHH
Q 003532 21 TITRVRLENFMCH--------SSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (812)
Q Consensus 21 ~i~~i~i~nf~~~--------~~~~i~f~~g~~~-I~G~NgsGKStl~dai~ 63 (812)
....|.++|.--. ...++...||..+ |+||||+|||+|+..|-
T Consensus 478 ~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILg 529 (728)
T KOG0064|consen 478 NFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILG 529 (728)
T ss_pred cccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHh
Confidence 3455666666433 2235566788666 99999999999988764
No 428
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.00093 Score=69.01 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=25.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+++.+| ++.+.|.|||||||||..|.
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence 4556677776 88999999999999999875
No 429
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.89 E-value=0.86 Score=49.02 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (812)
Q Consensus 638 ~~~l~~l~~~i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 701 (812)
......+..++..++..+-+...+...+...++.++++...+......+.......+..++.|.
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666555555555555555655555555555555444444444444443
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.88 E-value=0.00092 Score=62.59 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=25.1
Q ss_pred cccceEEEeCC---ceEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIELGE---WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f~~---g~~~I~G~NgsGKStl~dai~ 63 (812)
.|-+-+|.+++ .+.+|+||||+||||++..|.
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 34444566654 478999999999999999987
No 431
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.87 E-value=0.0026 Score=52.81 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.3
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcCCcCC
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKG 72 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~~~~~ 72 (812)
.+..+...+| +..|.||+|+||||++-.+.-.|.+..+.
T Consensus 19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~ 58 (213)
T COG4136 19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58 (213)
T ss_pred EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcce
Confidence 3444555666 66799999999999988777666655543
No 432
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.87 E-value=0.99 Score=49.34 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003532 193 DLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKI 230 (812)
Q Consensus 193 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 230 (812)
..+..+...+..+..+......++..++..+..++..+
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555555555555555554443
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.86 E-value=0.0011 Score=67.11 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=26.1
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhc
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
++..++|.+| ++.+.|.|||||||||..| |.++
T Consensus 21 d~V~l~v~~GeIHaLLGENGAGKSTLm~iL-~G~~ 54 (501)
T COG3845 21 DDVSLSVKKGEIHALLGENGAGKSTLMKIL-FGLY 54 (501)
T ss_pred CceeeeecCCcEEEEeccCCCCHHHHHHHH-hCcc
Confidence 6677777776 8999999999999998864 3444
No 434
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00086 Score=72.79 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 269 l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 300 (501)
T PRK11288 269 REPISFSVRAGEIVGLFGLVGAGRSELMKLLY 300 (501)
T ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHc
Confidence 46777788776 88999999999999999987
No 435
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.86 E-value=0.00086 Score=60.93 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 37 QIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 37 ~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+...|| +..+.|||||||||++..|.
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmIL 49 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMIL 49 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHh
Confidence 3344565 77799999999999988775
No 436
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.00091 Score=61.90 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=21.7
Q ss_pred ceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 35 ~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..|++++| ++.++|||||||||++.-+.
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLT 71 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLT 71 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHh
Confidence 334455666 77799999999999887643
No 437
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.85 E-value=0.0014 Score=69.61 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=25.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|.+..+.|.+| -..|+|+||+||||||.+|.
T Consensus 19 ~~~~~l~~~~G~riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred ecCCcceeCCCCEEEEECCCCCCHHHHHHHHc
Confidence 36667788776 66799999999999999876
No 438
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0017 Score=72.31 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=26.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+++..+++.+| +++|+|+||||||||+.+|.
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 35666677776 88899999999999999987
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.82 E-value=0.001 Score=61.68 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHh
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
.|+.+|+||+||||||++.+|...+
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3899999999999999999876444
No 440
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.81 E-value=1.3 Score=49.89 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 003532 206 DALVLELEATIKPTEKELSELQRKIRNM-EHVEEITQDLQRLKK 248 (812)
Q Consensus 206 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~~~~~~~~~~~~~~ 248 (812)
...+.+++.++..+..+++.+...+..+ ..+..+..++..+..
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 233333444444444
No 441
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.80 E-value=0.0011 Score=62.32 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=24.4
Q ss_pred cccceEEEe--CCceEEEEcCCCCChhHHHHHHH
Q 003532 32 CHSSLQIEL--GEWVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 32 ~~~~~~i~f--~~g~~~I~G~NgsGKStl~dai~ 63 (812)
.|-...++| .+.+.+|+||||+||||++..|.
T Consensus 18 ~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 18 PFVPNDTELDPERQILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred ceEeeeEEecCCceEEEEECCCCCChHHHHHHHH
Confidence 443334444 44689999999999999999985
No 442
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0014 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=26.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
.+..|++-|| +-.|+|.+||||||++.+|.--|
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhccc
Confidence 4566677787 55699999999999999987444
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.78 E-value=0.00092 Score=61.49 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhc
Q 003532 44 VNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
+.+|+||||||||||+..|.-.++
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 678999999999999999965443
No 444
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.78 E-value=0.002 Score=72.04 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=34.8
Q ss_pred CeeEeEEEEeec------ccccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf------~~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|+.++.+...-- .-+.+..++|.+| +++|+||||||||||+++|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 55 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILG 55 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 566777766521 1356777888886 88999999999999999987
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.77 E-value=0.0011 Score=60.87 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHh
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
.++.+|+|||||||||++.+|.-.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999987544
No 446
>PRK13409 putative ATPase RIL; Provisional
Probab=96.77 E-value=0.0016 Score=71.37 Aligned_cols=44 Identities=23% Similarity=0.086 Sum_probs=29.9
Q ss_pred CeeEeEEEEeeccc--ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENFMC--HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf~~--~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
|..+..+... |+. +....+.|.+| +++|+||||||||||+.+|.
T Consensus 340 ~l~~~~ls~~-~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 340 LVEYPDLTKK-LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred EEEEcceEEE-ECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555431 222 34445566666 88999999999999999876
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.74 E-value=0.0014 Score=60.15 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 44 VNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
+.+|+||||||||||+++|.-.++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6789999999999999999876654
No 448
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.73 E-value=0.0047 Score=62.10 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=28.4
Q ss_pred eCCceEEEEcCCCCChhHHHHHHHHHhcCCcCC
Q 003532 40 LGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (812)
Q Consensus 40 f~~g~~~I~G~NgsGKStl~dai~~~l~~~~~~ 72 (812)
+..|+|+|+|.+--||||||+||....|..-+.
T Consensus 242 Ip~GvTlIvGGGyHGKSTLL~Ale~GVYnHipG 274 (448)
T PF09818_consen 242 IPKGVTLIVGGGYHGKSTLLEALERGVYNHIPG 274 (448)
T ss_pred eCCcEEEEECCCCccHHHHHHHHHhcccCCCCC
Confidence 356899999999999999999999887766553
No 449
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.73 E-value=0.0015 Score=59.42 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 36 LQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 36 ~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
..++..+| +.+|.||+|+|||||+..|.-
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence 33444454 888999999999999998753
No 450
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.71 E-value=0.002 Score=59.74 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=23.7
Q ss_pred cceEEEeCC-ceEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGE-WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~-g~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+ .+.+|+||||+||||++.+|.
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344445544 589999999999999999986
No 451
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.89 Score=46.66 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---HhHHHHHHHHH
Q 003532 188 LQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME-HVEEITQDLQRLKKKLAW---SWVYDVDRQLK 263 (812)
Q Consensus 188 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 263 (812)
+..+...+..+...+..........-.-=-.+-.+...++.+.+.++ .+.....++......+.. ..-........
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e 89 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE 89 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 264 EQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNT 343 (812)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (812)
..+.-+......-.....++-+++.++..++..+...+.+...+......+...-...+.+...++.++.+..-.-..+-
T Consensus 90 ~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 90 REESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 344 SYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDE 423 (812)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 423 (812)
+...+++.+.-.+++....+.... -+.+.++-++..+.+++.-++..+.....-....+.++.+.-.-+..-+.+
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQ-----VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReq 244 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQ-----VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQ 244 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHH
Q 003532 424 IEDYDKKCRE 433 (812)
Q Consensus 424 ~~~~~~~~~~ 433 (812)
...++.++..
T Consensus 245 k~alkkEL~q 254 (772)
T KOG0999|consen 245 KNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHH
No 452
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.68 E-value=0.87 Score=46.13 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003532 189 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRK 229 (812)
Q Consensus 189 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~ 229 (812)
.+++..+......+....+....++..+..++.++..+..+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~q 81 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQ 81 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 453
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.66 E-value=0.0019 Score=55.59 Aligned_cols=30 Identities=37% Similarity=0.550 Sum_probs=23.4
Q ss_pred cceEEEeCCceEE-EEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g~~~-I~G~NgsGKStl~dai~ 63 (812)
.++.|.+..|-|+ |+|.|||||||+..-|.
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 4556677777666 99999999999877654
No 454
>PLN03211 ABC transporter G-25; Provisional
Probab=96.66 E-value=0.0014 Score=72.72 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.5
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+.+.+| +++|.||||||||||+++|.
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4556677776 88999999999999999985
No 455
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.66 E-value=1.6 Score=48.72 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003532 191 VNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (812)
Q Consensus 191 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~ 231 (812)
+...+..+..++.+.-+.+..++..+..++.++..+..+..
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~ 222 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIE 222 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455555555555544443
No 456
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1.4 Score=47.78 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 413 EKNEIRRISDEIEDYDKKCREIRSEI 438 (812)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (812)
++.++..+..++....+-+..+...+
T Consensus 853 ieq~ls~l~~~~k~~~nli~~ltEk~ 878 (970)
T KOG0946|consen 853 IEQKLSNLQEKIKFGNNLIKELTEKI 878 (970)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhh
Confidence 33334444444444444444443333
No 457
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.59 E-value=0.003 Score=70.73 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=32.1
Q ss_pred CeeEeEEEEeec--c--cccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 19 AGTITRVRLENF--M--CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 19 ~m~i~~i~i~nf--~--~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+..++.|.+. | + -+.+..+++.+| .++|+||||||||||+..|.
T Consensus 451 ~i~~~nv~~~-~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~ 499 (659)
T TIGR00954 451 GIKFENIPLV-TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILG 499 (659)
T ss_pred eEEEEeeEEE-CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566666662 2 1 135566777776 78899999999999999875
No 458
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.59 E-value=0.0018 Score=63.01 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHhc
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
|.+..|.|||||||||++..|.-.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56888999999999999998876664
No 459
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0017 Score=61.14 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHh
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l 66 (812)
.|+.+|+||.||||||.+.||.--+
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHH
Confidence 4899999999999999999986433
No 460
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.56 E-value=0.0017 Score=61.20 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhc
Q 003532 44 VNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
+..|.|||||||||+...|.-.|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999987764
No 461
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.56 E-value=1.5 Score=47.45 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=5.9
Q ss_pred HHHHHHhhcC
Q 003532 142 ELLELIDHFN 151 (812)
Q Consensus 142 ~~~~~~~~~~ 151 (812)
.+.+-+..||
T Consensus 6 SVk~Avs~FG 15 (522)
T PF05701_consen 6 SVKEAVSLFG 15 (522)
T ss_pred HHHHHHHHcC
Confidence 4556666665
No 462
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0029 Score=61.85 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred CeeEeEEEEeeccc-ccce-------EEEeCCc-eEEEEcCCCCChhHHHHHH
Q 003532 19 AGTITRVRLENFMC-HSSL-------QIELGEW-VNFITGQNGSGKSAILTAL 62 (812)
Q Consensus 19 ~m~i~~i~i~nf~~-~~~~-------~i~f~~g-~~~I~G~NgsGKStl~dai 62 (812)
..-.++|++.|.+- |.+. .+.+..| +..|+|.|||||||+...+
T Consensus 317 ~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LL 369 (546)
T COG4615 317 FPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL 369 (546)
T ss_pred CCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHH
Confidence 34488899988752 2222 2233233 7779999999999976543
No 463
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0026 Score=55.65 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=24.3
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+++.+| +.++.||+|+|||||++.+.
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 5556666554 77899999999999999875
No 464
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.55 E-value=0.0019 Score=65.44 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChhHHHHHHHHHh
Q 003532 43 WVNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 43 g~~~I~G~NgsGKStl~dai~~~l 66 (812)
|+++|+|||||||||++.+|.-.+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999999987544
No 465
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0021 Score=59.72 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCChhHHHHHHH
Q 003532 42 EWVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~ 63 (812)
+|+|.|+|++||||||+++.|.
T Consensus 24 ~GvTAlFG~SGsGKTslin~Ia 45 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIA 45 (352)
T ss_pred CceEEEecCCCCChhhHHHHHh
Confidence 4899999999999999999986
No 466
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.54 E-value=0.83 Score=44.15 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 003532 188 LQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR-NMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQT 266 (812)
Q Consensus 188 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (812)
+..+...+++....+.-....-..+-.+...+......+...+. ..+.+..+..++.....-+ .+-..-.+..
T Consensus 64 idavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL------~~ys~~~ee~ 137 (306)
T PF04849_consen 64 IDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELL------QIYSNDDEES 137 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCcHhhhc
Q ss_pred HHHHHHH---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003532 267 LKIEKLK---------------DRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKE 331 (812)
Q Consensus 267 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (812)
....... -.+..+..++..++.+-..++.+...+..+...++.+-..+ +...-.++.....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~q 214 (306)
T PF04849_consen 138 EPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQ 214 (306)
T ss_pred ccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 332 KLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLS 411 (812)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 411 (812)
+..+..++............+|..+..++..++... ..+-.+-..+...+......-..+..++.++..++.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~--------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC--------KQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003532 412 KEKNEIRRISDEIEDYDKK 430 (812)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~ 430 (812)
+...-+.+.+.+++.++++
T Consensus 287 E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 287 ECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHhhCC
No 467
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.0007 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHhc
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
|.+.++.|||||||||+...+.+-|-
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~ 27 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL 27 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc
Confidence 35788999999999999888776543
No 468
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0029 Score=64.26 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCCCCCCCCeeEeEEEEeecccc-cce------EEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 11 GYGPQRSGAGTITRVRLENFMCH-SSL------QIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 11 ~~~~~~~~~m~i~~i~i~nf~~~-~~~------~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
++++-+..-....-|.+.+|-.+ ++. .+.+..| -..++|+||+||||||.||.-
T Consensus 67 ~~~~~~~~~~~~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 67 NSGELTSGEGKSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred CCCCCCCccccccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34433444456678888888654 432 2333222 345899999999999999985
No 469
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.49 E-value=0.002 Score=72.94 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 761 LCESAKEEVDTFEAAEKELMEIEKNL 786 (812)
Q Consensus 761 l~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (812)
++.++..+..++..+..++..+..++
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 470
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0025 Score=66.29 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=24.6
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+.+++|.+| .++|+|+|||||||++++|.
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 4456666665 89999999999999999875
No 471
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.46 E-value=0.0025 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCChhHHHHHHH
Q 003532 41 GEWVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 41 ~~g~~~I~G~NgsGKStl~dai~ 63 (812)
.+..++++|++|+|||||+++|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999986
No 472
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.46 E-value=0.0021 Score=58.87 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhHHHHHHHH
Q 003532 44 VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~ 64 (812)
+.+|+||||+||||++..|..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999873
No 473
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.44 E-value=0.0041 Score=63.63 Aligned_cols=49 Identities=27% Similarity=0.205 Sum_probs=36.7
Q ss_pred eeEeEEEEeecccc--cceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 20 GTITRVRLENFMCH--SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 20 m~i~~i~i~nf~~~--~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
-+|.++.+.-+|.+ .+.++++.+| -..|+|+||+||||++.+|.-+...
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 56666666555543 7788888776 5569999999999999998755443
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.43 E-value=0.0026 Score=59.74 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhc
Q 003532 44 VNFITGQNGSGKSAILTALCIAFG 67 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~ 67 (812)
+.+|+||||||||||+.+|.-.|.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 667999999999999999986654
No 475
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.004 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCChhHHHHHHH
Q 003532 43 WVNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 43 g~~~I~G~NgsGKStl~dai~ 63 (812)
.+.++.||+|+||||||..+.
T Consensus 38 ECvvL~G~SG~GKStllr~LY 58 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLY 58 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHH
Confidence 388899999999999887643
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.42 E-value=0.003 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 43 WVNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 43 g~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
.+.+|+|+|||||||++.+|.-.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47789999999999999999876653
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.40 E-value=0.003 Score=55.61 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCChhHHHHHHHHHhcCC
Q 003532 42 EWVNFITGQNGSGKSAILTALCIAFGCR 69 (812)
Q Consensus 42 ~g~~~I~G~NgsGKStl~dai~~~l~~~ 69 (812)
++..+|+||+|+||||++.+|...++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3577899999999999999998877654
No 478
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.40 E-value=0.0028 Score=72.41 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=32.4
Q ss_pred CeeEeEEEEeecccc--cceEEEeCC-ceEEEEcCCCCChhHH-HHHH
Q 003532 19 AGTITRVRLENFMCH--SSLQIELGE-WVNFITGQNGSGKSAI-LTAL 62 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~--~~~~i~f~~-g~~~I~G~NgsGKStl-~dai 62 (812)
||. ..|.|.|-+.+ .+.+++++. .++||+|++||||||| ||-|
T Consensus 1 ~~~-~~I~i~gar~hNLKni~v~iP~~~l~v~TGvSGSGKSSLafDtl 47 (943)
T PRK00349 1 MMM-DKIIIRGAREHNLKNIDLDIPRDKLVVFTGLSGSGKSSLAFDTI 47 (943)
T ss_pred CCC-CcEEEeccccccccccccccCCCceEEEecCCCCCchhHHHHHH
Confidence 444 56778877766 556666655 4999999999999999 5665
No 479
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.38 E-value=2.2 Score=47.16 Aligned_cols=43 Identities=5% Similarity=-0.072 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 003532 752 EDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESVSY 794 (812)
Q Consensus 752 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 794 (812)
++...++++++.++..++.+-..+..-+..+-++.-++.++++
T Consensus 671 dEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRLE 713 (717)
T PF09730_consen 671 DEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLE 713 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433
No 480
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.37 E-value=0.003 Score=70.39 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.1
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~ 64 (812)
.+..++|.+| .++|+||||||||||++.|.-
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5566777775 888999999999999999864
No 481
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0046 Score=52.04 Aligned_cols=42 Identities=29% Similarity=0.534 Sum_probs=28.7
Q ss_pred EEEEeecccc-cc----eEEEeC--Cce-EEEEcCCCCChhHHHHHHHHH
Q 003532 24 RVRLENFMCH-SS----LQIELG--EWV-NFITGQNGSGKSAILTALCIA 65 (812)
Q Consensus 24 ~i~i~nf~~~-~~----~~i~f~--~g~-~~I~G~NgsGKStl~dai~~~ 65 (812)
+|++.|+..| +. .+|.|+ .|- .++.||+|+||||++.-+..+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll 51 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH
Confidence 4667776665 33 345553 354 458899999999999887643
No 482
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.37 E-value=0.0031 Score=69.73 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.1
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
.+..+.+.|| .++|+||||||||||++.|.
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ 362 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556777776 78899999999999999885
No 483
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.0065 Score=57.76 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=23.9
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
++..+...+| +..|+|.+|||||||+.+|.
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Confidence 4455556665 77899999999999999876
No 484
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.36 E-value=1.5 Score=45.24 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=20.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003532 177 DKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEAT 215 (812)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 215 (812)
.+|..+.....+..+...+..+...+..+...+..+...
T Consensus 95 dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~s 133 (570)
T COG4477 95 DKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVES 133 (570)
T ss_pred hhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555554433
No 485
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.35 E-value=0.0031 Score=71.38 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=12.3
Q ss_pred HHHHHhHHhhhhhhhhhh
Q 003532 783 EKNLQTSESVSYSFLNFF 800 (812)
Q Consensus 783 ~~~~~~l~~~~~~~~~~~ 800 (812)
...+..|..+...+...+
T Consensus 565 ~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777766666
No 486
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.003 Score=55.37 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=0.0
Q ss_pred eEEEEcCCCCChhHHHHHHH
Q 003532 44 VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~ 63 (812)
+.+|+||+|+|||||+.+|.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~ 25 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALL 25 (191)
T ss_pred EEEEECCCCCCHHHHHHHHH
No 487
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.32 E-value=0.0028 Score=64.85 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=0.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAILT 60 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~d 60 (812)
.+..+++.+| +++|+||+|||||||+.
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh
No 488
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.31 E-value=0.0032 Score=70.00 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+++..+.+.|| +++|.||||||||||+++|.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~ 72 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALA 72 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHh
No 489
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0045 Score=63.52 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=0.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHh
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l 66 (812)
+++..++.+.| -+.|+|+||||||||+.+|.-.+
T Consensus 368 L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 368 LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.30 E-value=0.0033 Score=58.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred eEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 44 VNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
+..|+||+||||||+..+|.-.|++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~ 25 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
No 491
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.29 E-value=0.0043 Score=58.54 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=0.0
Q ss_pred cceEEEe-CCceEEEEcCCCCChhHHHHHH
Q 003532 34 SSLQIEL-GEWVNFITGQNGSGKSAILTAL 62 (812)
Q Consensus 34 ~~~~i~f-~~g~~~I~G~NgsGKStl~dai 62 (812)
.+..+++ ...+++|+||||+||||++..|
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i 50 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQI 50 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHH
No 492
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.28 E-value=0.45 Score=39.03 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHHH
Q 003532 655 AQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKE 734 (812)
Q Consensus 655 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 734 (812)
+..+...++.++.++..++.++..+......+...+..+......+...... +..+..++..++.....+-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~---------~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE---------VEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 735 IILEKLQFSMNEAEAKVEDLKLSFQSLCESA 765 (812)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 765 (812)
.-+-+-.+++.+++.++.+++.-+...-..+
T Consensus 89 ellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 89 ELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.28 E-value=0.0037 Score=68.81 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=0.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+.+..+++.|| .++|+||||||||||++.|.
T Consensus 334 l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 365 (544)
T TIGR01842 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLIV 365 (544)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHh
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.27 E-value=0.0032 Score=57.82 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=0.0
Q ss_pred eEEEEcCCCCChhHHHHHHH
Q 003532 44 VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 44 ~~~I~G~NgsGKStl~dai~ 63 (812)
+.+|+|||||||||++..|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
No 495
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.26 E-value=0.0044 Score=52.96 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=0.0
Q ss_pred cceEEEeCCceEE-EEcCCCCChhHHHHHH
Q 003532 34 SSLQIELGEWVNF-ITGQNGSGKSAILTAL 62 (812)
Q Consensus 34 ~~~~i~f~~g~~~-I~G~NgsGKStl~dai 62 (812)
.++.+...+|=++ |+||+||||||++--+
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vl 56 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVL 56 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHH
No 496
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.26 E-value=0.0018 Score=56.96 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=0.0
Q ss_pred cceEEEeCCc-eEEEEcCCCCChhHHH
Q 003532 34 SSLQIELGEW-VNFITGQNGSGKSAIL 59 (812)
Q Consensus 34 ~~~~i~f~~g-~~~I~G~NgsGKStl~ 59 (812)
.++.+.+.+| +..+.|||||||||.+
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~F 47 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTF 47 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEE
No 497
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.26 E-value=0.0038 Score=68.62 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHH
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~ 63 (812)
+++..+.+.+| .++|+||+|||||||+..|.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
No 498
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=2.4 Score=46.30 Aligned_cols=260 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhHHHH
Q 003532 182 FFKATLLQQVNDLLQS-IYNHLNKGDALVLELEATIK-PTEKELSELQRKIRNMEHVEEITQD-LQRLKKKLAWSWVYDV 258 (812)
Q Consensus 182 ~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~~-~~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 258 (812)
......+..+...+.. ..-.++.+.....+...++. ....++..+.+.+..+......... ...-............
T Consensus 359 ~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 359 SQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 259 DRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGE 338 (812)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (812)
...+.........+..++...-...+..+..+..+-.++.+.....-.+-.+..........+..+...+..++..+...
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 339 LVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIR 418 (812)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 418 (812)
.......+..++.+...+......+..++ ......++........+...+..+.....+....+..+...+.++..++.
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el-~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKEL-TTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003532 419 RISDEIEDYDKKCREIRSEIRELQ 442 (812)
Q Consensus 419 ~l~~~~~~~~~~~~~l~~~l~~l~ 442 (812)
........++.++..+...+..+.
T Consensus 598 ~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 598 IEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 499
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.25 E-value=0.0044 Score=66.00 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=0.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCChhHHHHHHHHHhcC
Q 003532 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGC 68 (812)
Q Consensus 33 ~~~~~i~f~~g-~~~I~G~NgsGKStl~dai~~~l~~ 68 (812)
|.+..+.+.+| -.+|+||||+||||||..|.-.++.
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~ 374 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc
No 500
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=96.25 E-value=0.0047 Score=54.47 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred cccceEEEeCCc-eEEEEcCCCCChhHHHHHH---HHHhcCCcCCcccccchhhhhhcCCceeEEEEEEEeC
Q 003532 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTAL---CIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 32 ~~~~~~i~f~~g-~~~I~G~NgsGKStl~dai---~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
.|-+..++++.| -.+++|.||||||||+..+ ..|.+|.-.-.+|+...+.-+....+.+++--++...
T Consensus 29 ~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~ 100 (291)
T KOG2355|consen 29 IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKT 100 (291)
T ss_pred eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccc
Done!