BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003533
(812 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/759 (74%), Positives = 668/759 (88%), Gaps = 10/759 (1%)
Query: 4 MDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKT 63
M+LLRSNLSRV+IPEPT+RI+K ECC+SFDTPRSEGGLFVD+NSFLA+GKD+V WN+EKT
Sbjct: 1 MELLRSNLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKT 60
Query: 64 GNPVYLHIKQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSY 123
GNPVYLHIKQTRK + PEDRP KKPTLLAIGV+GGFDNNE EY+E++SIVILP++V+L +
Sbjct: 61 GNPVYLHIKQTRKSI-PEDRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPF 119
Query: 124 PSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWK 183
PSVELPEKVR+AVD ++ A GAERKEQVAAWTA+KK S +A+ LQQI +G++IPPSGWK
Sbjct: 120 PSVELPEKVRIAVDTVVNAVGAERKEQVAAWTAEKKLISEHALTLQQIKSGIVIPPSGWK 179
Query: 184 CAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGA 243
C+KCDK +NLWLNLTDGMILCGR+NWDGTGGNNHAVEHYKET YPLAVKLGTIT+DLE A
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239
Query: 244 DVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDV 303
DV+SYPEDDSV+DPLLA+HLA FGIDFSS+QKTEMTTAERELDQNTNFDWNRIQESG+++
Sbjct: 240 DVYSYPEDDSVLDPLLAEHLAHFGIDFSSMQKTEMTTAERELDQNTNFDWNRIQESGKEL 299
Query: 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNM 363
P+FGPGYTGLVNLGNSCYLAATMQ++FSTH+F +RY++ + LK AFE APADPT+DLNM
Sbjct: 300 VPVFGPGYTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQSLKMAFEMAPADPTLDLNM 359
Query: 364 QLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQ 423
QLTKL HGLLSGKYS+PA +KD ATT D +QEGIPPRMFK VIAASH EFSSMRQQ
Sbjct: 360 QLTKLGHGLLSGKYSMPATQKD-----ATTGDPRQEGIPPRMFKNVIAASHAEFSSMRQQ 414
Query: 424 DALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPL 483
DAL+FFLH V +VER + P++DP++SFKFGIEE+I CPSGKV YN+R D ILSL IPL
Sbjct: 415 DALDFFLHLVGKVERASNTTPDLDPSRSFKFGIEEKILCPSGKVGYNKREDCILSLNIPL 474
Query: 484 DEATNKEELAAFQKLKMERISEGKDV-TNEEIVRPRVPLEACLSTFSAPEELPDFYSTAL 542
EATNK+EL AF K K + E D+ +++EIVRPRVPLEACL+ F++ E + D+YS+AL
Sbjct: 475 HEATNKDELEAFHKQKAGKGLEENDMRSSDEIVRPRVPLEACLANFASSEPIEDYYSSAL 534
Query: 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPG 602
K TTA K+ GLTSFPDYLVLHMRKFVME GWVPKKLDVYIDVPD+IDISHMRSKGLQPG
Sbjct: 535 KGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPG 594
Query: 603 EELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662
EELLP+G PE+ ++S +PVAN++IV+QLVSMGF+ LHC+KAA+NTSNAGVEEAMNWLLSH
Sbjct: 595 EELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 654
Query: 663 MDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722
MDDPDID P+S +T + IDQS V+TLLSFGF+E+VAR ALKASGGDIEKATDW+FNNP+
Sbjct: 655 MDDPDIDAPISHQT--SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPN 712
Query: 723 ASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHILAYF 761
AS S ++++S AQTPA +GLPDGGG L I+++
Sbjct: 713 ASVSDMDVSSSNS-AQTPAQSGLPDGGGKYKLFGIVSHM 750
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/815 (47%), Positives = 514/815 (63%), Gaps = 69/815 (8%)
Query: 7 LRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNP 66
L S L +R+P+ +R+ K EC SFDTP SEGGL++ +N+FL +GK +V +F KTG
Sbjct: 9 LLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQR 68
Query: 67 VYLHIKQTRK------LVAPEDRPSKKPTLLAIGVEGGFD--NNEAEYDETHSIVILPEY 118
VYLH+++TR+ D P KKPT LAIGVEGGFD ++ E+DE IVILP+Y
Sbjct: 69 VYLHLRRTRRPKEEDTSAGTGDPPRKKPTRLAIGVEGGFDLTEDKFEFDEDVKIVILPDY 128
Query: 119 VTLSYPSVE-LPEKVR----LAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDN 173
+ ++ + LP+ VR AV+A+L A+ A RK++V AW + +Q S +A NL+Q+DN
Sbjct: 129 LEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFNLKQLDN 188
Query: 174 GVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKL 233
IPP GWKC+KCD R+NLWLNLTDG ILCGRR +DG+GGNNHAVEHY+ETGYPLAVKL
Sbjct: 189 PARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKL 248
Query: 234 GTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNF-D 292
GTIT D GADV+SY EDD V+DP LA+HL+ FGID +QKT+ T E E+D N +
Sbjct: 249 GTITPD--GADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGE 306
Query: 293 WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA 352
W IQESG ++PLFGPGYTG+ NLGNSCYL + +QV+FS F +Y + L+ F+
Sbjct: 307 WELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDK--LEKIFQN 364
Query: 353 APADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAA 412
AP DPT D + Q+ KL HGLLSG+YS PA E + Q+GI PRMFKA+I
Sbjct: 365 APTDPTQDFSTQVAKLGHGLLSGEYSKPALESGDGEQVPEQKEV-QDGIAPRMFKALIGK 423
Query: 413 SHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471
HPEFS+ RQQDA EFFLH ++ VER + + +P + F+F +EE+I C + KV Y +
Sbjct: 424 GHPEFSTNRQQDAQEFFLHLINMVER--NCRSSENPNEVFRFLVEEKIKCLATEKVKYTQ 481
Query: 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAP 531
R+DYI+ L +P+D A NKEEL + +R +E + V E+VR +VP +CL + AP
Sbjct: 482 RVDYIMQLPVPMDAALNKEELLE--YEEKKRQAEEEKVPLPELVRAQVPFSSCLEAYGAP 539
Query: 532 EELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDI 591
E++ DF+STAL+AK+ A K+ SFPDYLV+ ++KF WVPKKLDV I++P+ +DI
Sbjct: 540 EQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDI 599
Query: 592 SHMRSKGLQPGEELLPEGGP-----------------EDE--------VQSNKPVANKDI 626
S +R GLQPGEE LP+ P EDE P+ ++ +
Sbjct: 600 SQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESV 659
Query: 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL------SQETQCAA 680
+ QLV MGF C KA T N+G E AMNW++SHMDDPD PL + AA
Sbjct: 660 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAA 719
Query: 681 ID---QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF---NNPDASTSSDM----D 730
D + V T++S GFS + A AL+A+ +E+A DWIF ++ DA + D+
Sbjct: 720 ADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRS 779
Query: 731 AATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNL 765
AA S + P + DG G K+ L FI ++
Sbjct: 780 AAESISESVPVGPKVRDGPG----KYQLFAFISHM 810
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/815 (46%), Positives = 513/815 (62%), Gaps = 69/815 (8%)
Query: 7 LRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNP 66
L S L +R+P+ +R+ K EC SFDTP SEGGL++ +N+FL +GK +V +F KTG
Sbjct: 9 LLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQR 68
Query: 67 VYLHIKQTRK------LVAPEDRPSKKPTLLAIGVEGGFDNNEAEY--DETHSIVILPEY 118
VYLH+++TR+ D P KKPT LAIGVEGGFD +E ++ DE IVILP+Y
Sbjct: 69 VYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDY 128
Query: 119 VTLSYPSVE-LPEKVR----LAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDN 173
+ ++ + LP+ VR AV+A+L A+ A RK++V AW + +Q S +A +L+Q+DN
Sbjct: 129 LEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDN 188
Query: 174 GVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKL 233
IPP GWKC+KCD R+NLWLNLTDG ILCGRR +DG+GGNNHAVEHY+ETGYPLAVKL
Sbjct: 189 PARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKL 248
Query: 234 GTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNF-D 292
GTIT D GADV+SY EDD V+DP LA+HL+ FGID +QKT+ T E E+D N +
Sbjct: 249 GTITPD--GADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGE 306
Query: 293 WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA 352
W IQESG ++PLFGPGYTG+ NLGNSCYL + +QV+FS F +Y + L+ F+
Sbjct: 307 WELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDK--LEKIFQN 364
Query: 353 APADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAA 412
AP DPT D + Q+ KL HGLLSG+YS P E + Q+GI PRMFKA+I
Sbjct: 365 APTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEV-QDGIAPRMFKALIGK 423
Query: 413 SHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471
HPEFS+ RQQDA EFFLH ++ VER + + +P + F+F +EE+I C + KV Y +
Sbjct: 424 GHPEFSTNRQQDAQEFFLHLINMVER--NCRSSENPNEVFRFLVEEKIKCLATEKVKYTQ 481
Query: 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAP 531
R+DYI+ L +P+D A NKEEL + +R +E + + E+VR +VP +CL + AP
Sbjct: 482 RVDYIMQLPVPMDAALNKEELLE--YEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAP 539
Query: 532 EELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDI 591
E++ DF+STAL+AK+ A K+ SFPDYLV+ ++KF WVPKKLDV I++P+ +DI
Sbjct: 540 EQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDI 599
Query: 592 SHMRSKGLQPGEELLPEGGP-----------------EDE--------VQSNKPVANKDI 626
S +R GLQPGEE LP+ P EDE P+ ++ +
Sbjct: 600 SQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESV 659
Query: 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL------SQETQCAA 680
+ QLV MGF C KA T N+G E AMNW++SHMDDPD PL + AA
Sbjct: 660 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAA 719
Query: 681 ID---QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF---NNPDASTSSDM----D 730
D + V T++S GFS + A AL+A+ +E+A DWIF ++ DA + D+
Sbjct: 720 ADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRS 779
Query: 731 AATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNL 765
AA S + P + DG G K+ L FI ++
Sbjct: 780 AADSISESVPVGPKVRDGPG----KYQLFAFISHM 810
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/815 (46%), Positives = 512/815 (62%), Gaps = 69/815 (8%)
Query: 7 LRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNP 66
L S L +R+P+ +R+ K EC SFDTP SEGGL++ +N+FL +GK +V +F KTG
Sbjct: 9 LLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGPR 68
Query: 67 VYLHIKQTRK------LVAPEDRPSKKPTLLAIGVEGGFDNNEAEY--DETHSIVILPEY 118
VYLH+++TR+ D P KKPT LAIGVEGGFD +E ++ DE IVILP+Y
Sbjct: 69 VYLHLRRTRRPKEEDPTTGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDY 128
Query: 119 VTLSYPSVE-LPEKVR----LAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDN 173
+ ++ + LP+ VR AV+A+L A+ A RK++V AW + +Q S +A +L+Q+DN
Sbjct: 129 LEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDN 188
Query: 174 GVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKL 233
IPP GW+C+KCD R+NLWLNLTDG ILCGRR +DG+GGNNHAVEHY+ETGYPLAVKL
Sbjct: 189 PARIPPCGWECSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKL 248
Query: 234 GTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNF-D 292
GTIT D GADV+SY EDD V+DP LA+HL+ FGID +QKT+ T E E+D N +
Sbjct: 249 GTITPD--GADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGE 306
Query: 293 WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA 352
W IQESG ++PLFGPGYTG+ NLGNSCYL + + V+FS F +Y + L+ F+
Sbjct: 307 WELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVLVLFSIPDFQRKYVDK--LEKIFQN 364
Query: 353 APADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAA 412
AP DPT D + Q+ KL HGLLSG+YS P E + Q+GI PRMFKA+I
Sbjct: 365 APTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEV-QDGIAPRMFKALIGK 423
Query: 413 SHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471
HPEFS+ RQQDA EFFLH ++ VER + + +P + F+F +EE+I C + KV Y +
Sbjct: 424 GHPEFSTNRQQDAQEFFLHLINMVER--NCRSSENPNEVFRFLVEEKIKCLATEKVKYTQ 481
Query: 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAP 531
R+DYI+ L +P+D A NKEEL + +R +E + + E+VR +VP +CL + AP
Sbjct: 482 RVDYIMQLPVPMDAALNKEELLE--YEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAP 539
Query: 532 EELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDI 591
E++ DF+STAL+AK+ A K+ SFPDYLV+ ++KF WVPKKLDV I++P+ +DI
Sbjct: 540 EQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDI 599
Query: 592 SHMRSKGLQPGEELLPEGGP-----------------EDE--------VQSNKPVANKDI 626
S +R GLQPGEE LP+ P EDE P+ ++ +
Sbjct: 600 SQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESV 659
Query: 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL------SQETQCAA 680
+ QLV MGF C KA T N+G E AMNW++SHMDDPD PL + AA
Sbjct: 660 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAA 719
Query: 681 ID---QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF---NNPDASTSSDM----D 730
D + V T++S GFS + A AL+A+ +E+A DWIF ++ DA + D+
Sbjct: 720 ADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRS 779
Query: 731 AATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNL 765
AA S + P + DG G K+ L FI ++
Sbjct: 780 AADSISESVPVGPKVRDGPG----KYQLFAFISHM 810
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 622 bits (1604), Expect = e-177, Method: Compositional matrix adjust.
Identities = 328/774 (42%), Positives = 476/774 (61%), Gaps = 53/774 (6%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL + +R+P +R+FK EC S+D+P SEGGL+V +NSFL +G++HV ++ KTG
Sbjct: 7 ELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCMNSFLGFGREHVERHYRKTG 66
Query: 65 NPVYLHIKQTRKLVA--------PEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILP 116
VY+H+K+ K A P R K L + + F+ ++ EY++ +VI P
Sbjct: 67 QSVYMHLKRHVKEKATGAAGGAIPRRRNGK--VFLDLELNRDFNGDDYEYEDEAKLVIFP 124
Query: 117 EYVTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGV 175
++ + P++E LP V +A DA+L A +K++ +W ++ Q S +A +L+Q+DNGV
Sbjct: 125 DHYEIPLPNIEELPALVTIACDAVLNAPSPYKKQESDSW-EEEIQVSRHARSLRQLDNGV 183
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
IPPSGWKCAKC+ R+NLWLNLTDG +LCG+ +DG+GGN HA+EHY+E+ +PLAVKL T
Sbjct: 184 RIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALEHYRESNFPLAVKLNT 243
Query: 236 ITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNR 295
IT D GAD++S+ E+++V+DP +++HL FGID +Q+TE Q DW
Sbjct: 244 ITPD--GADIYSFDEEEAVLDPHISEHLLHFGIDMLQMQRTENGHHTDNHVQPRISDWEV 301
Query: 296 IQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPA 355
IQE+G ++P++G GYTG+ NLGNSCYL+ TMQV+FS F Y L+ F+ +P
Sbjct: 302 IQEAGLKLKPVYGSGYTGIKNLGNSCYLSTTMQVLFSIPEFQRAYAGN--LQRIFDYSPL 359
Query: 356 DPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQE--GIPPRMFKAVIAAS 413
DPT D N Q+ KL HGLLSG+YS P + + +Q+ GI P+MFKA+++
Sbjct: 360 DPTQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKQQQQRGISPKMFKALVSKG 419
Query: 414 HPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRR 472
HPEFSS RQQDA EF LH ++ VER +SG +P+ F+F +EER C S KV Y +R
Sbjct: 420 HPEFSSNRQQDAHEFLLHLINLVERNNSGSE--NPSDVFRFIVEERTQCCQSQKVRYTQR 477
Query: 473 LDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPE 532
+DY++ L +PL+ A+N+EEL A++ + E + + E+VR RVP ACL F+ PE
Sbjct: 478 VDYLMQLPVPLEAASNREELIAYEGKRKEAEENMRPLP--EVVRARVPFTACLQAFTEPE 535
Query: 533 ELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDIS 592
+PDF+S+AL+AK+ K++ +FP+Y+++ ++KF WVPKKLD+ +DVPD +D++
Sbjct: 536 NVPDFWSSALQAKSAGVKTSRFATFPEYMIVQLKKFTFGVDWVPKKLDMSVDVPDFLDLN 595
Query: 593 HMRSKGLQPGEELLPEGG-----PEDEVQSN------KPVANKDIVSQLVSMGFNHLHCE 641
+R+ GLQ GEE LP+ PED S+ P ++ V QL MGF C
Sbjct: 596 RLRATGLQAGEEELPDLTPPIVIPEDTRDSSTNNSLESPEIDESSVMQLAEMGFPLEACR 655
Query: 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQET------------QCAAID----QSK 685
KA T N G E A NW+++HM++PD PL+ T +A+D +
Sbjct: 656 KAVYYTGNMGAEMAFNWIIAHMEEPDFAEPLAVPTYMESDLPSPSLPTTSALDNQPPEES 715
Query: 686 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQT 739
+ L S GF ALKAS ++E+A DWIF +PD S+ A S TA T
Sbjct: 716 ISILTSMGFPRHHTIQALKASNNNLERALDWIFTHPDCEDESE---AMSDTADT 766
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 339/803 (42%), Positives = 486/803 (60%), Gaps = 63/803 (7%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL ++ +R+P +R++K EC S+D+P SEGGL+V +N+FLA+G++HV +F KTG
Sbjct: 26 ELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTG 85
Query: 65 NPVYLHIKQ-TRKLVA-------PEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILP 116
VY+H+K+ R+ V P+ R SK L + + ++++ EY++ +VI P
Sbjct: 86 QSVYMHLKRHVREKVRGASGGALPKRRNSK--IFLDLDTDDDLNSDDYEYEDEAKLVIFP 143
Query: 117 EYVTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGV 175
++ ++ P++E LP V +A DA+L ++ RK+ W ++ S YA NL Q+DNGV
Sbjct: 144 DHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWE-NELPVSKYANNLTQLDNGV 202
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
IPPSGWKCA+CD R+NLWLNLTDG +LCG+ +D +GGN HA+EHY++ GYPLAVKLGT
Sbjct: 203 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGT 262
Query: 236 ITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNR 295
IT D GADV+S+ E++ V+DP LA+HLA FGID + TE + ++ + +W
Sbjct: 263 ITPD--GADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVS-EWEV 319
Query: 296 IQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPA 355
IQESG ++P++GPGYTGL NLGNSCYL++ MQ +FS F Y P F+ +P
Sbjct: 320 IQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP--RIFDYSPL 377
Query: 356 DPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDT-KQEGIPPRMFKAVIAASH 414
DPT D N Q+TKL HGLLSG+YS P + + +Q GI PRMFKA ++ SH
Sbjct: 378 DPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSH 437
Query: 415 PEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRL 473
PEFSS RQQDA EFFLH V+ VER G +P+ F+F +EERI C + KV Y R+
Sbjct: 438 PEFSSNRQQDAQEFFLHLVNLVERNRIGSE--NPSDVFRFLVEERIQCCQTRKVRYTERV 495
Query: 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEE 533
DY++ L + ++ ATNK+EL A++ + E +E E+VR ++P ACL FS PE
Sbjct: 496 DYLMQLPVAMEAATNKDELIAYELTRRE--AEANRRPLPELVRAKIPFSACLQAFSEPEN 553
Query: 534 LPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISH 593
+ DF+S+AL+AK+ K++ SFP+YLV+ ++KF WVPKK DV ID+PD++DI+H
Sbjct: 554 VDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINH 613
Query: 594 MRSKGLQPGEELLPEGGP--------EDEVQSNKPVANKDI----VSQLVSMGFNHLHCE 641
+R++GLQPGEE LP+ P +D + N+ + DI V QL MGF C
Sbjct: 614 LRARGLQPGEEELPDISPPIVIPDDSKDRLM-NQLIDPSDIDESSVMQLAEMGFPLEACR 672
Query: 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQ------------CAAIDQSKVETL 689
KA T N G E A NW++ HM++PD PL+ + +D E +
Sbjct: 673 KAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEI 732
Query: 690 L----SFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQT------ 739
+ S GF A AL+A+ ++E+A DWIF++P+ SD + A
Sbjct: 733 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEA 792
Query: 740 -PADAGLPDGGGS----KFLKHI 757
P + DG G+ F+ H+
Sbjct: 793 KPEGPRVKDGSGTYELFAFISHM 815
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 330/764 (43%), Positives = 476/764 (62%), Gaps = 52/764 (6%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL ++ +R+P +R++K EC S+D+P SEGGL+V +N+FLA+G++HV +F KTG
Sbjct: 26 ELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTG 85
Query: 65 NPVYLHIKQ-TRKLVA-------PEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILP 116
VY+H+K+ R+ V P+ R SK L + + ++++ EY++ +VI P
Sbjct: 86 QSVYMHLKRHVREKVRGASGGALPKRRNSK--MFLDLDTDDDLNSDDYEYEDEAKLVIFP 143
Query: 117 EYVTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGV 175
++ ++ P++E LP V +A DA+L ++ RK+ W ++ S YA NL Q+DNGV
Sbjct: 144 DHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWE-NELPVSKYANNLTQLDNGV 202
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
IPPSGWKCA+CD R+NLWLNLTDG +LCG+ +D +GGN HA+EHY++TGYPLAVKLGT
Sbjct: 203 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDTGYPLAVKLGT 262
Query: 236 ITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNR 295
IT D GADV+S+ E+++V+DP LA+HLA FGID + TE + ++ + +W
Sbjct: 263 ITPD--GADVYSFQEEEAVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKPRVS-EWEV 319
Query: 296 IQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPA 355
IQE+G ++P++GPGYTGL NLGNSCYL++ MQ +FS F Y P F+ +P
Sbjct: 320 IQETGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP--RIFDYSPL 377
Query: 356 DPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDT-KQEGIPPRMFKAVIAASH 414
DPT D N Q+TKL HGLLSG+YS P + + +Q GI PRMFKA ++ SH
Sbjct: 378 DPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSH 437
Query: 415 PEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRL 473
PEFSS RQQDA EFFLH V+ VER G +P+ F+F +EERI C + KV Y R+
Sbjct: 438 PEFSSNRQQDAQEFFLHLVNLVERNRIGSE--NPSDVFRFLVEERIQCCQTRKVRYTERV 495
Query: 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEE 533
DY++ L + ++ ATNK+EL A++ + E S + + E+VR ++P ACL FS PE
Sbjct: 496 DYLMQLPVAMEAATNKDELIAYELTRREAESNRRPLP--ELVRAKIPFSACLQAFSEPEN 553
Query: 534 LPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISH 593
+ DF+S+AL+AK+ K++ SFP+YLV+ ++KF WVPKK DV +D+PD++DI+H
Sbjct: 554 VDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSVDMPDLLDINH 613
Query: 594 MRSKGLQPGEELLPEGGP--------EDEVQSNKPVANKDI----VSQLVSMGFNHLHCE 641
+R++GLQPGEE LP+ P +D + + + + DI V QL MGF C
Sbjct: 614 LRARGLQPGEEELPDISPPIVIPDDSKDRLMT-QLIDPSDIDESSVMQLAEMGFPLEACR 672
Query: 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQ------------CAAID----QSK 685
KA T N G E A NW++ HM++PD PL+ +D +
Sbjct: 673 KAVYFTGNMGAEVAFNWIVVHMEEPDFAEPLTMPGYGGAASAGASVFGATGLDNQPPEET 732
Query: 686 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDM 729
V + S GF A AL+A+ ++E+A DWIF++P+ SD
Sbjct: 733 VAIITSMGFHRNQAIQALRATNSNLERALDWIFSHPEFEEDSDF 776
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 331/761 (43%), Positives = 473/761 (62%), Gaps = 49/761 (6%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL ++ +R+P +R++K EC S+D+P SEGGL+V +N+FLA+G++HV +F KTG
Sbjct: 24 ELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTG 83
Query: 65 NPVYLHIKQ-TRKLVA-------PEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILP 116
VY+H+K+ R+ V P+ R SK L + ++ ++++ EY++ +VI P
Sbjct: 84 QSVYMHLKRHMREKVRGASGGALPKRRNSK--IFLDLDMDDDLNSDDYEYEDEAKLVIFP 141
Query: 117 EYVTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGV 175
++ ++ P++E LP V +A DA+L ++ RK+ W ++ S YA NL Q+DNGV
Sbjct: 142 DHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWE-NEVPVSKYANNLVQLDNGV 200
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
IPPSGWKCA+CD R+NLWLNLTDG +LCG+ +D +GGN HA+EHY++ GYPLAVKLGT
Sbjct: 201 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGT 260
Query: 236 ITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNR 295
IT D GADV+S+ E+ V DP LA+HLA FGID Q TE + ++ + +W
Sbjct: 261 ITPD--GADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTENGLRDNDIKPRVS-EWEV 317
Query: 296 IQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPA 355
IQESG ++P++GPGYTGL NLGNSCYL++ MQ +FS F Y P F+ +P
Sbjct: 318 IQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP--RIFDYSPL 375
Query: 356 DPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDT-KQEGIPPRMFKAVIAASH 414
DPT D N Q+TKL HGLLSG+YS P + + +Q GI PRMFKA ++ SH
Sbjct: 376 DPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSH 435
Query: 415 PEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRL 473
PEFSS RQQDA EFFLH V+ VER G +P+ F+F +EERI C + KV Y R+
Sbjct: 436 PEFSSNRQQDAQEFFLHLVNLVERNRIGSE--NPSDVFRFLVEERIQCCQTRKVRYTERV 493
Query: 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEE 533
DY++ L + ++ ATNK+EL ++ ++ E +E E+VR ++P ACL F+ P+
Sbjct: 494 DYLMQLPVAMEAATNKDELITYELMRRE--AEANRRPLPELVRAKIPFSACLQAFAEPDN 551
Query: 534 LPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISH 593
+ DF+S+AL+AK+ K++ SFP+YLV+ ++KF WVP+K DV ID+PD++DISH
Sbjct: 552 VDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISH 611
Query: 594 MRSKGLQPGEELLPEGGP--------EDEVQSNKPVANKDI----VSQLVSMGFNHLHCE 641
+R++GLQPGEE LP+ P +D + N+ + DI V QL MGF C
Sbjct: 612 LRARGLQPGEEELPDISPPIVIPDDSKDRLM-NQLIDPSDIDESSVMQLAEMGFPLEACR 670
Query: 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAA---------IDQSKVETLL-- 690
KA T N G E A NW++ HM++PD PL+ A +D E ++
Sbjct: 671 KAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPGYGGAGASVFGATGLDNQPPEEIVAI 730
Query: 691 --SFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDM 729
S GF A AL+A+ ++E+A DWIF++P+ SD
Sbjct: 731 ITSMGFQRNQAVQALQATNHNLERALDWIFSHPEFEEDSDF 771
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 326/755 (43%), Positives = 464/755 (61%), Gaps = 48/755 (6%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL + +R+P+ +R++K EC S+D+P SEGGL+V +N+FL +G++H+ ++ KTG
Sbjct: 21 ELLVPYMPTIRVPKSGDRVYKTECAFSYDSPDSEGGLYVCMNTFLGFGREHIERHYRKTG 80
Query: 65 NPVYLHIKQTRKLVAPEDR----PSKKPTLLAIGVE--GGFDNNEAEYDETHSIVILPEY 118
VYLH+K+ P P ++ L + +E G +++ EY++ +VI P++
Sbjct: 81 QCVYLHLKRHVIEKVPGASGGALPKRRNAKLFLDLEANGDLSSDDFEYEDEAKLVIFPDH 140
Query: 119 VTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVII 177
+S P++E LP V +A DA+L A+ RK+ +W ++ Q S +A +L Q+DNGV I
Sbjct: 141 YEISLPNIEELPALVTIASDALLSAKSPYRKQDPDSWE-EELQASKHAKSLVQLDNGVRI 199
Query: 178 PPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTIT 237
PPSGWKC+KCD R+NLWLNLTDG +LCG+ +DG+GGN HA+EHYKETGYPLAVKLGTIT
Sbjct: 200 PPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHAMEHYKETGYPLAVKLGTIT 259
Query: 238 SDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQ 297
D GADV+S+ E++ V+DP +A+HLA FGID +Q E + ++ + +W IQ
Sbjct: 260 PD--GADVYSFDEEEPVLDPHIAKHLAHFGIDMLQMQVAENGLRDNDIKPRVS-EWEVIQ 316
Query: 298 ESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADP 357
E+G ++P++GPGYTG+ NLGNSCYL A MQ +FS F Y P F+ +P DP
Sbjct: 317 EAGVKLKPMYGPGYTGMKNLGNSCYLNAVMQAIFSIPEFQRAYVGNLP--RIFDYSPLDP 374
Query: 358 TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDT-KQEGIPPRMFKAVIAASHPE 416
T D N Q+ KL HGLLSG+YS P + + +Q GI P+MFKA I+ H E
Sbjct: 375 TQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKPQQNGISPQMFKAFISKDHTE 434
Query: 417 FSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRLDY 475
FSS RQQDA EFFLH ++ VER G +P+ F+F +EER C S KV Y R+DY
Sbjct: 435 FSSNRQQDAQEFFLHLINLVERNPVGSE--NPSDVFRFLVEERTQCCQSRKVRYTERVDY 492
Query: 476 ILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP 535
I+ L + ++ ATNK+EL A++ LK E+VR ++P ACL FS P +
Sbjct: 493 IMQLPVAMEAATNKDELIAYE-LKRREAEA-ARRAPPELVRAKIPFSACLQAFSEPTNVE 550
Query: 536 DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMR 595
DF+S+AL+AK+ K++ SFP YLV+ ++KF W+PKKLDV ID+PD +DISH+R
Sbjct: 551 DFWSSALQAKSAGVKTSRFASFPQYLVVQIKKFTFGLDWIPKKLDVSIDMPDFLDISHLR 610
Query: 596 SKGLQPGEELL--------PEGGPEDEVQSNKPVANKDI----VSQLVSMGFNHLHCEKA 643
+ GLQPGEE L P+D + +N V + DI V QL MGF C KA
Sbjct: 611 AMGLQPGEEELPDIAPPIIIPEDPKDRMMNNF-VESLDIDESSVMQLAEMGFPLEACRKA 669
Query: 644 AVNTSNAGVEEAMNWLLSHMDDPDIDMPL-------SQETQCAAID---------QSKVE 687
T N G E A NW+++HM++PD PL + + A + + V
Sbjct: 670 VYYTGNLGAEVAFNWIIAHMEEPDFAEPLVVPVFGGAASSGVAGLGAVGLDNQPPEEMVS 729
Query: 688 TLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722
++S GF +A ALKA+ ++E+A +WIF++P+
Sbjct: 730 IIISMGFQRSLAIQALKATNNNLERALEWIFSHPE 764
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 316/765 (41%), Positives = 476/765 (62%), Gaps = 54/765 (7%)
Query: 11 LSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLH 70
L +++P +R++K ECC FDTP + GLF+DL LA+ K +V N +KT + +YL+
Sbjct: 7 LKNIKVPTEKSRLWKDECCYCFDTPENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLN 66
Query: 71 IKQT----RKLVAP------EDRPSKKPTLLAIGVEGGF--DNNEAEYDETHSIVILPE- 117
K+ K+ +P E++P KK LAIGVEGGF ++ E +Y+E + + I P+
Sbjct: 67 FKKVAIVNEKVKSPTIENGGEEKPPKK---LAIGVEGGFNVEDEEIKYEEHYKLYIFPDD 123
Query: 118 -YVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGV- 175
++ LS P + PE VR+ + I RKE++ +W A+ SA+A ++ Q+DN
Sbjct: 124 KFLELSDPII--PENVRVCCEKIKTLNSQSRKEEIVSWNAESVFPSAFAESIIQLDNNTK 181
Query: 176 -IIPPSGWKC--AKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVK 232
I P W+C CDK +NLWLNLTDG I CGR+ DGTGGN HA EH+ +T YP++VK
Sbjct: 182 KIDPKGPWRCDIEGCDKVENLWLNLTDGFIGCGRKYADGTGGNGHAQEHFNQTQYPISVK 241
Query: 233 LGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFD 292
LGTIT D ADV+SYPEDD V DPLL QHL +G++ + + KTE + AE ELDQN NF+
Sbjct: 242 LGTITKD--HADVYSYPEDDMVSDPLLFQHLTHWGLNPNVMVKTEKSMAELELDQNLNFE 299
Query: 293 WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA 352
+ +IQE G+ +E +FGPG TG+ NLGNSCY+++ +Q++F+ +F TRY +A+F+
Sbjct: 300 FGKIQEKGKLLENVFGPGLTGIENLGNSCYMSSVIQMIFAIDSFQTRYLKDR--EASFKD 357
Query: 353 APADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAA 412
DPT +Q++KLAHGLLSG YS+P + AN + T Q GI P+MFK++I A
Sbjct: 358 ITQDPTQSFEIQMSKLAHGLLSGDYSIPLSKPSKNANEESEAAT-QIGIAPKMFKSLIGA 416
Query: 413 SHPEFSSMRQQDALEFFLHFVDQVERVHSGKP----EVDPTKSFKFGIEERISC-PSGKV 467
SH EFS+M+QQDA E+ + ++ +ER +P + +PT+ F+F E+RI C SG+V
Sbjct: 417 SHAEFSTMKQQDAHEYLQYLLEYIERAEHSRPSWIQQANPTRLFQFHNEDRIECGSSGQV 476
Query: 468 AYNRRLDYILSLGIPLDEATNKEELAAFQK-LKMERISEGKDVTNEEIVRPRVPLEACLS 526
Y RRL+ ILS+ + LD+ATNK+E+A +++ LK + KD +E +RP +PL +C++
Sbjct: 477 KYTRRLENILSVPVNLDDATNKQEVAQYEETLKQQNGVRQKD---QEEIRPIIPLVSCIN 533
Query: 527 TFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP 586
F P + DF S A KT + S+ + +FP+ L++H++K+ A + PKKL+V++DVP
Sbjct: 534 GFVEPYRVEDFLSPATGVKTFSLNSSRMATFPEVLIIHLKKYTYNADYTPKKLNVFMDVP 593
Query: 587 DIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVN 646
DIIDI +R +G++ GE L EG + +P N++++ L+SM F + C+KA +
Sbjct: 594 DIIDIDSLRGRGIKEGEVPLKEGTINTTTKVPEPSFNQEVLDTLLSMDFPLVRCKKALLA 653
Query: 647 TSNAGVEEAMNWLLSHMDDPDIDMPLS-------------QETQCAAIDQSKVETLLSFG 693
T E AMNW+ H +DPDID+ + + + V+ ++ G
Sbjct: 654 TGGKDAELAMNWIFEHTEDPDIDIEQTPVNNNNNNNNSSNSNDKLFVFNSQDVDNIIGMG 713
Query: 694 FSEEVARNALKASGGDIEKATDWIF---NNPDASTSSDMDAATSS 735
F++ A+ ALK + G++E+A DW+F +N D + D +A+TSS
Sbjct: 714 FTDSQAKLALKNTKGNLERAADWLFSHIDNLDELVAKD-NASTSS 757
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 309/775 (39%), Positives = 456/775 (58%), Gaps = 52/775 (6%)
Query: 5 DLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTG 64
+LL + +R+P+ +R++K EC S+D+P S+GGL+V +++FL +G++HV ++ KTG
Sbjct: 7 ELLVPYMPTIRVPKSGDRVYKTECAFSYDSPESDGGLYVCMSTFLGFGREHVERHYRKTG 66
Query: 65 NPVYLHIKQTRKLVAPEDR----PSKKPTLLAIGVEGGFDNN--EAEYDETHSIVILPEY 118
VY+H+K+ +L A P + L + +E + N + EY++ +VI P++
Sbjct: 67 QSVYMHLKRHIRLKATGASGGAFPKRINGRLFLDLENNTEMNTEDYEYEDEAKLVIFPDH 126
Query: 119 VTLSYPSVE-LPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVII 177
++ P++E LP V +A DA+L ++ RK +W ++ Q S +A NL QIDNGV I
Sbjct: 127 FEIALPNIEELPALVTIACDAVLNSKSPYRKLDQESW-EEELQVSKFANNLVQIDNGVKI 185
Query: 178 PPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTIT 237
PPSGWKC+KCD ++NLWLNLTDG I+CGR G+GGN HA+EH+K+ GYPLAV+LG+IT
Sbjct: 186 PPSGWKCSKCDLQENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHKQMGYPLAVRLGSIT 245
Query: 238 SDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQ 297
D GADV+S+ E+++V+DP LA+HLA FGID +Q +E + E+ N +W IQ
Sbjct: 246 PD--GADVYSFDEEEAVIDPHLAKHLAHFGIDMLQMQGSENGVLDNEVKPRVN-EWEVIQ 302
Query: 298 ESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADP 357
E+G ++P+FG GYTG+ NLGNS YL MQV+FS F Y L F+ AP DP
Sbjct: 303 ETGLKLKPMFGSGYTGIKNLGNSSYLTTVMQVIFSIPEFQRAYVGN--LTRIFDYAPLDP 360
Query: 358 TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQ-EGIPPRMFKAVIAASHPE 416
T D + Q+ KL HGLLSG++S P + + Q +GI RMFKA+++ H E
Sbjct: 361 TQDFSTQMAKLGHGLLSGQFSKPPMKSELIEQVMKEEHKPQPKGINTRMFKALMSKGHTE 420
Query: 417 FSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRLDY 475
FSS RQQDA EFFLHF++ VER G +P+ F+F +EER C S KV Y R+DY
Sbjct: 421 FSSNRQQDAEEFFLHFINLVERNSIGAE--NPSDVFRFLVEERTQCCQSRKVRYTERVDY 478
Query: 476 ILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP 535
I+ L +P++ ATNKEEL A+ + E +E E+VR ++P ACL F+ PE +P
Sbjct: 479 IMQLPVPMETATNKEELIAYDLKRRE--AESAKRPPPELVRAKIPFSACLQAFTEPENVP 536
Query: 536 DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMR 595
DF+S+AL+AK+ K++ SFP+YLV+ ++KF WVPKKLDV ID+PD++DI+H+R
Sbjct: 537 DFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLR 596
Query: 596 SKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEA 655
+ GL+ GEE LP+ N + L+S ++++ N +
Sbjct: 597 ATGLKSGEEELPD---IAPPIIIPDDPNGRMAESLLSGSGSNVNSSFKGAQPLNLPFGKK 653
Query: 656 MNWLLSHMD----------------DPDIDMPL-----------SQETQCAAIDQSKVET 688
LL +M+ + D PL S Q A ++Q E
Sbjct: 654 EAKLLRYMERMVEKFGFKFSVRLSVEIDFAEPLIIPGCGTVTSTSSHGQNALLNQPPEEI 713
Query: 689 ---LLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTP 740
+ S GF A AL+A+ ++E+A DW+F++P++ +D + T P
Sbjct: 714 VALICSMGFPRNHALQALRATNNNLERALDWMFSHPESEEGADNVSGCVDTENNP 768
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 247/725 (34%), Positives = 388/725 (53%), Gaps = 62/725 (8%)
Query: 12 SRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLA----YGKDHVGWNFEKTGNPV 67
+ V IP+ + I+++EC F++ EGG+ + L F + G H +FE+T +P+
Sbjct: 9 TNVVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCFQSGCGETGLKHSLVHFEQTLHPI 68
Query: 68 YLHI-KQTRKLVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSV 126
+ I +Q ++ + D P +K T L I D++E YD + L + L +
Sbjct: 69 VVTIARQPKQKI--NDEPPQKITKLEIRE----DSDEDLYDYFYVPKCLVCNIILD---I 119
Query: 127 ELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAK 186
+ P + L+++A+ A A K Q+ AW ++ T + +NL + + + C+K
Sbjct: 120 QDP-LLSLSLEAMKNATKASNKSQLTAW-ENELTTCDHIINLPE-NETYVTNLDNATCSK 176
Query: 187 CDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVF 246
CD +NLW+ LT G + CGR+ + G GGN HA+ HY +TG+PLAVKL +I+ D + AD++
Sbjct: 177 CDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKSISPDGQ-ADIY 235
Query: 247 SYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPL 306
Y D+ +DP + H+ FGID + L KTE + AE +L+QN N+D+ +E + L
Sbjct: 236 CYSCDEERIDPNIKTHMLNFGIDIAKLNKTEKSLAELQLEQNLNWDFGASEEDDAS-KRL 294
Query: 307 FGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLT 366
FGPG TGL NLGNSCYLA+TMQ +FS F L + + PT DL QL
Sbjct: 295 FGPGLTGLKNLGNSCYLASTMQSLFSIKEFAIHELN---LFNTYNSVCQTPTTDLQCQLG 351
Query: 367 KLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDAL 426
KLA GL+SGK+S P++ N +++ Q+G+ P MFK V+ H EF + +QQDA
Sbjct: 352 KLADGLVSGKFSKPSK-IGLLNNPSSSILPYQDGLRPFMFKDVVGQGHSEFGTSQQQDAY 410
Query: 427 EFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGK-VAYNRRLDYILSLGIPLDE 485
EF L+ + ++ + S + D TK F F E+++SC S K V Y+ L+L +P
Sbjct: 411 EFLLYLLGKIRK--SSIAKTDITKIFDFETEQKLSCLSCKRVRYSSFSSQGLTLTVP--- 465
Query: 486 ATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAK 545
++K+ I EG+ + E V ++ CL P+++ ++ A K+K
Sbjct: 466 -----------RVKIGEI-EGEQIYEE------VSIDQCLDATIQPDQM-EYTCEACKSK 506
Query: 546 TTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPD--IIDISHMRSKGLQPGE 603
AT + + SFP L+L +F ++ G+ KKL + I V + I + + +K E
Sbjct: 507 LGATTTTAMKSFPKVLILQANRFDLQ-GYQVKKLSIPIIVNEDGIYNFDRLMAKDHPNDE 565
Query: 604 ELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663
+ LPE E N+ + QL +MGF + C++A + T N+ E AMNWL HM
Sbjct: 566 DYLPEKTETIE-------WNQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHM 618
Query: 664 DDPDIDMPLSQETQC----AAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719
+DP+ID P+ +++ + V++L FGF+ AR L S +IE+A DWI N
Sbjct: 619 EDPEIDKPIEVSELLPKADSSVSEENVQSLCEFGFTVAQARKGLLESNNNIERAVDWILN 678
Query: 720 NPDAS 724
+PD S
Sbjct: 679 HPDES 683
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 213/769 (27%), Positives = 331/769 (43%), Gaps = 140/769 (18%)
Query: 11 LSRVRIPEPTNRIFKQECCVSFDTPRSE---------GGLFVDLNSFLAYGKDHVGWNFE 61
L V +P + K EC F++P +E L + LN F A HV +
Sbjct: 6 LENVNVPA---VVSKDECIYCFESPYNEPLALNASPKHSLNICLNCFQATCNRHVPLHIR 62
Query: 62 ------KTGNPVYLHIKQTRK---LVAPEDRPSKKPTLLAIGVEGGFDNNEAEYDETHSI 112
T + YL I + K E+ +KK L I E D+TH+
Sbjct: 63 VTEYACDTIHSNYLTIAKVEKPKQENVEENNNNKKIKLQVI---------ETSEDDTHNT 113
Query: 113 VI---------LPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSA 163
+ +P V ++ ++ IL A+ + +++ +W + T
Sbjct: 114 IWSLQRFNGENVPRTVLSKSTDSDISSTALEKIEKILKAKSQDFEDKKNSWVLEIS-TCP 172
Query: 164 YAMNLQ---QIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVE 220
+ N Q + +N V + +C+ CD NLWL L G I CGR G G++HA++
Sbjct: 173 HTENFQIPSKPENTVNLN----QCSSCDLTQNLWLCLHCGNIGCGREQI-GIDGHSHALD 227
Query: 221 HYK-ETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDP---LLAQHLAFFGIDFSSLQKT 276
HY+ +PLA+KLG+++S D++ Y DD P L L +GI+
Sbjct: 228 HYRSNNNHPLAIKLGSLSS--STYDLYCYACDDETRFPDNVNLGSALQIYGINIQEKIAD 285
Query: 277 EMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGY--TGLVNLGNSCYLAATMQVMFSTH 334
E T + +++QN N+ + + SG++ E L GL+NLGNSCYL + +Q + +
Sbjct: 286 EKTLVQLQVEQNENWQFRMVDSSGKEFEKLSASKNYGCGLINLGNSCYLNSVIQSLVNGG 345
Query: 335 AFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTT 394
++ + L + F P +L Q KL + + P
Sbjct: 346 V---PNWSLDFLGSKFPLDVVYPDNNLKCQWIKLLNAMKCEPELYP-------------- 388
Query: 395 DTKQEGIPPRMFKAVIAASHPEFSSMRQQDALE-----FFLHFVDQVERVHSGKPEVDPT 449
GI P FK I +H EFSS RQQDA+E L SG P +P
Sbjct: 389 ----NGIKPTTFKKCIGQNHQEFSSNRQQDAMEFLTFLLDLLDKKFFSSSSSGIP--NPN 442
Query: 450 KSFKFGIEERISCP-SGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERIS---E 505
+F +E+R+ C GKV Y+ + ++ IPL+E +++ +ERI E
Sbjct: 443 DLVRFMMEDRLQCNICGKVKYS--YEPTEAIQIPLEENDEPQDM-------LERIKAYFE 493
Query: 506 GKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHM 565
G+ + +F K K TA K G S P L+L+
Sbjct: 494 GQTI--------------------------EFKCANCKEKVTANKKPGFKSLPQTLILNP 527
Query: 566 RKFVMEAGWVPKK------LDVYIDVPDIIDISHMRSKGLQP-GEELLPEGGPEDEVQSN 618
+ ++ W+P K L ID D++D+S S+G P E LLP+ EDE +S+
Sbjct: 528 IRIRLQ-NWIPVKTSNELSLPGLIDRDDMLDVSSYLSQGFDPQTENLLPD---EDENRSS 583
Query: 619 KPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQC 678
N+ +SQL+ MGF +A NT N E AMNWL HMDDPD++ P
Sbjct: 584 F-TPNQCSISQLIEMGFTQNASVRALFNTGNQDAESAMNWLFQHMDDPDLNDPFVPPPNV 642
Query: 679 AAIDQSKVE-----TLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722
D+ +V+ ++LS G + + R AL + GD+ ++ +W+FNN D
Sbjct: 643 PKKDKREVDEVSLTSMLSMGLNPNLCRKALILNNGDVNRSVEWVFNNMD 691
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/434 (23%), Positives = 168/434 (38%), Gaps = 52/434 (11%)
Query: 179 PSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVK------ 232
PS W C+ C + W+ LT + CGR N HA +HY++ PL
Sbjct: 24 PSSWCCSVCRSNKSPWVCLTCSSVHCGRY------VNGHAKKHYEDAQVPLTNHKKSEKQ 77
Query: 233 ---LGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTT---AERELD 286
T+ D + Y DD VV+ + +L+ + T +R+L
Sbjct: 78 DKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQNLENSAFTADRHKKRKLL 137
Query: 287 QNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPL 346
+N+ + ++ +G TGL NLGN+C++ A +Q + + FC
Sbjct: 138 ENSTLNSKLLKVNGSTT----AICATGLRNLGNTCFMNAILQSLSNIEQFC--------- 184
Query: 347 KAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMF 406
F+ PA + + H G +V E+ A ++ P +F
Sbjct: 185 -CYFKELPAVELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLF 243
Query: 407 KAVIAASHPEFSSMRQQDALEFFLHFVDQVE-RVHSGKPEVDPTKSFKFGIEERISCPSG 465
V+ P F +QQDA EF + +D + + G V + + E S
Sbjct: 244 -YVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQ---ENSTLSASN 299
Query: 466 KVAYNRRLDYILSL--GIPLDE------ATNKEELAAFQKLKMERISE--GKDVTNEEIV 515
K N + ++ GI +E T + F L ++ S+ K N+E
Sbjct: 300 KCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQE-N 358
Query: 516 RPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA 572
P L CL +F+ EEL + + K K +TK + P L LH+++F A
Sbjct: 359 GPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTA 418
Query: 573 GWVPKKLDVYIDVP 586
++ K+D Y++ P
Sbjct: 419 -YLRNKVDTYVEFP 431
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/434 (23%), Positives = 168/434 (38%), Gaps = 52/434 (11%)
Query: 179 PSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPL--------- 229
PS W C+ C + W+ LT + CGR N HA +HY++ PL
Sbjct: 24 PSSWCCSVCRSNKSPWVCLTCSSVHCGRY------VNGHAKKHYEDAQIPLLNHKRSEKQ 77
Query: 230 AVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTT---AERELD 286
T+ D + Y DD VV+ + +L+ + T +R+L
Sbjct: 78 EKAQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQNLENSAFTADRHRKRKLL 137
Query: 287 QNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPL 346
+N++ + ++ +G TGL NLGN+C++ A +Q + + FC
Sbjct: 138 ENSSLNSKLLKVNGSTT----AICATGLRNLGNTCFMNAILQSLSNIEQFC--------- 184
Query: 347 KAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMF 406
F+ PA + + H G +V E+ A ++ P +F
Sbjct: 185 -CYFKELPAVELRNGKTAGRRTYHTRSQGDSNVSLVEEFRKTLCALWQGSQTAFSPESLF 243
Query: 407 KAVIAASHPEFSSMRQQDALEFFLHFVDQVE-RVHSGKPEVDPTKSFKFGIEERISCPSG 465
V+ P F +QQDA EF + +D + + G V + + E S
Sbjct: 244 -YVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQ---ENSTLSASN 299
Query: 466 KVAYNRRLDYILSL--GIPLDE------ATNKEELAAFQKLKMERISE--GKDVTNEEIV 515
K N + ++ GI +E T + F L ++ S+ K N+E
Sbjct: 300 KCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQE-N 358
Query: 516 RPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA 572
P L CL +F+ EEL + + K K +TK + P L LH+++F A
Sbjct: 359 GPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTA 418
Query: 573 GWVPKKLDVYIDVP 586
++ K+D Y+ P
Sbjct: 419 -YLRNKVDTYVQFP 431
>sp|Q9HFS7|UBP4_KLULA Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1
Length = 796
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 26/290 (8%)
Query: 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGL 372
GLVNLGNSCYL +Q + H + T K V++N +L + GL
Sbjct: 433 GLVNLGNSCYLNCIIQCLLGCHELSYIFLTNSYRKH----------VNVNSRLG--SKGL 480
Query: 373 LSGKYSVPAQE--KDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFL 430
L+ +S Q+ + A T+ + + P FK + + F +QQD EF
Sbjct: 481 LANYFSQLVQKMYQQGKLQAYNNTNMESTAVHPTQFKLACGSINSLFKGKQQQDCQEFCQ 540
Query: 431 HFVDQVERVHSGKPEVDPTKSFKFGIEE-RISCP---SGKVAYNRRLDYILSLGIPLDEA 486
+D + + P K E+ R + P + + + R L S+ + L +
Sbjct: 541 FLLDGLHEDLNQCGTNPPLKELSPEAEKMRETMPMRIASAIEWERYLTTDFSVIVDLFQG 600
Query: 487 TNKEELAAFQKLKMERISEGKDVTNEEIVRPR-VPLEACLSTFSAPEELPD---FYSTAL 542
+L + V + + R R + C F+ E L +Y
Sbjct: 601 QYASQLRCKICAHTSTTYQAFSVLSVPVPRARSCTIYDCFKEFTKLETLEKDELWYCPYC 660
Query: 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDIS 592
K + +TK +T P+ L++H+++F + K +V+++ P+ +D++
Sbjct: 661 KQRQPSTKQIIITRLPNNLIIHLKRF----DNMMNKNNVFVNYPNELDLT 706
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1
SV=2
Length = 1080
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 34/302 (11%)
Query: 301 QDVEPLFG---PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADP 357
+++ P+FG P TGL NLGN+CY+ + +Q + + Y+ + +
Sbjct: 725 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFNRNCYQD--------- 774
Query: 358 TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEF 417
D+N LL K V A+E A T + I P+ FK I + +F
Sbjct: 775 --DINRS------NLLGHKGEV-AEEFGIIMKALWTGQYRY--ISPKDFKVTIGKINDQF 823
Query: 418 SSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRLDYI 476
+ QQD+ E L +D + H + D K K E + + + A+ +
Sbjct: 824 AGSSQQDSQELLLFLMDGL---HEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLN 880
Query: 477 LSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVR-PRVPLEACLSTFSAPEELP 535
S+ + L + K + + R E + + + L+ CL FS E+L
Sbjct: 881 ESIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLT 940
Query: 536 D---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP-DIIDI 591
D FY + +A+ + K + P L++H+++F + W +KL +D P + +D+
Sbjct: 941 DNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTSVDFPLENLDL 999
Query: 592 SH 593
S
Sbjct: 1000 SQ 1001
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 115/308 (37%), Gaps = 57/308 (18%)
Query: 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHA---FCTRYYTQEPLKAAFEAAPADPTVDLN 362
L G G+ GL NLGN+C+L A +Q + ST FC R ++ + A
Sbjct: 206 LLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRA---------- 255
Query: 363 MQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQ 422
+LT E A A E + P F+AV P FS Q
Sbjct: 256 QELT----------------EAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 299
Query: 423 QDALEFFLHFVDQVERVH---------------SGKPEVDPTKSFKFGIEERISCP-SGK 466
QDA EF + ER+H SG P + E +S
Sbjct: 300 QDAQEFLKLLM---ERLHLEINRRGRRAPPILASGPVPSPPRRGGALHEEPELSDDDRAN 356
Query: 467 VAYNRRLDY----ILSLGIPLDEATNKEELAAFQKLKMERISE-GKDVTNEEIVRPRVPL 521
+ + R L+ I+ L + ++ K + ++ E + + + +V L
Sbjct: 357 LMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSL 416
Query: 522 EACLSTFSAPEELPDFYSTAL---KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKK 578
C S F+ EEL + + KT +TK + FP LVLH+ +F G + KK
Sbjct: 417 RDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI-KK 475
Query: 579 LDVYIDVP 586
V +D P
Sbjct: 476 SSVGVDFP 483
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 34/302 (11%)
Query: 301 QDVEPLFG---PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADP 357
+++ P+FG P TGL NLGN+CY+ + +Q + + Y+ + +
Sbjct: 763 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFNRNCYQD--------- 812
Query: 358 TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEF 417
D+N LL K V A+E A T + I P+ FK I + +F
Sbjct: 813 --DINRS------NLLGHKGEV-AEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQF 861
Query: 418 SSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERIS-CPSGKVAYNRRLDYI 476
+ QQD+ E L +D + H + D K +K + + + + A+ +
Sbjct: 862 AGYSQQDSQELLLFLMDGL---HEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLN 918
Query: 477 LSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVR-PRVPLEACLSTFSAPEELP 535
S+ + L + K + K R E + + + L+ CL FS E+L
Sbjct: 919 ESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLT 978
Query: 536 D---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP-DIIDI 591
D FY + +A+ + K + P L++H+++F + W +KL +D P + +D+
Sbjct: 979 DNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTSVDFPLENLDL 1037
Query: 592 SH 593
S
Sbjct: 1038 SQ 1039
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHA---FCTRYYTQEPLKAAFEAAPADPTVDLN 362
L G G+ GL NLGN+C+L A +Q + ST FC R ++ + A
Sbjct: 206 LLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRA---------- 255
Query: 363 MQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQ 422
+LT E A A E + P F+AV P FS Q
Sbjct: 256 QELT----------------EAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 299
Query: 423 QDALEFF------LHF-VDQVER----VHSGKPEVDPTKSFKFGIEERISCP---SGKVA 468
QDA EF LH +++ R + + P P + + E +
Sbjct: 300 QDAQEFLKLLMERLHLEINRRGRRAPPILASGPVPSPPRRGGGALHEEPELSDDDRANLM 359
Query: 469 YNRRLDY----ILSLGIPLDEATNKEELAAFQKLKMERISE-GKDVTNEEIVRPRVPLEA 523
+ R L+ I+ L + ++ K + ++ E + + + +V L
Sbjct: 360 WKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRD 419
Query: 524 CLSTFSAPEELPDFYSTAL---KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLD 580
C S F+ EEL + + KT +TK + FP LVLH+ +F G + KK
Sbjct: 420 CFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI-KKSS 478
Query: 581 VYIDVP 586
V +D P
Sbjct: 479 VGVDFP 484
>sp|P50102|UBP8_YEAST Ubiquitin carboxyl-terminal hydrolase 8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP8 PE=1 SV=1
Length = 471
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 60/303 (19%)
Query: 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA 369
G +GL+N+G++C++++ +Q + F +Q + P + L K+
Sbjct: 135 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQ---IHSNNCKVRSPDKCFSCALDKIV 191
Query: 370 HGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFF 429
H L A A++++T+T+ +Q G + A + + QQDA EF+
Sbjct: 192 HELYG------ALNTKQASSSSTSTN-RQTGFIYLLTCA--WKINQNLAGYSQQDAHEFW 242
Query: 430 LHFVDQ--------------VERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDY 475
++Q V R ++ + E F+ +E I CP + +D
Sbjct: 243 QFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDP 302
Query: 476 ILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP 535
L L + ++ + L CL +F E+L
Sbjct: 303 FLDLSLD--------------------------------IKDKKKLYECLDSFHKKEQLK 330
Query: 536 DFYSTALKAKTT--ATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISH 593
DF + +T A K G+ P LVL +++F +KLD +I+ P +++ +
Sbjct: 331 DFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN 390
Query: 594 MRS 596
S
Sbjct: 391 YCS 393
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 64/293 (21%)
Query: 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA 369
G TGL NLGN+CY+ A +Q + S ++ L
Sbjct: 42 GVTGLRNLGNTCYMNAILQCLCS--------------------------------ISPLV 69
Query: 370 HGLLSGKYSVPAQEKD----AAANAATTTDT---KQEGIPPRMFKAVIAASHPEFSSMRQ 422
LSGKY + A + D A A A TD + + P +F++ + +P F+ Q
Sbjct: 70 EYFLSGKY-ITALQNDCSEVATAFAYLMTDMWLGDSDCVSPEIFRSALGNLYPAFTKKTQ 128
Query: 423 QDALEFFLHFVDQ----VERVHSGKPEVDPTKSFKFGIEERISCPSGKVA--YNRRLDYI 476
QDA EF ++ +++ +++ H + S + + I+ + + + +L+Y
Sbjct: 129 QDAQEFLIYVLNELHEALKKYHYPRRRSHEKGSAQRCCRKWITTETSVITQLFEGQLNYS 188
Query: 477 LSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP- 535
+ + + ++ T K E+ F L + SE + L+ CL F + L
Sbjct: 189 I-VCLKCEKCTYKNEV--FTVLSLPIPSEYE-----------CSLQDCLQCFFQQDTLTW 234
Query: 536 --DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP 586
+ + + K AG++ P ++ H+++F ++ G +KL I P
Sbjct: 235 NNQIHCSFCETKQETAVRAGISKAPKIIIFHLKRFDIQ-GTTKRKLRTDIHYP 286
>sp|Q6IP50|UBX1A_XENLA UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2
SV=1
Length = 296
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMP 671
L+ MGF+ EKA T N G+E AM+WL+ H DDPDID P
Sbjct: 10 LIEMGFSSTRAEKALTATGNQGIEPAMDWLVEHEDDPDIDEP 51
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 684 SKVETLLSFGFSEEVARNALKASGGD-IEKATDWIFNNPD 722
S +E+L+ GFS A AL A+G IE A DW+ + D
Sbjct: 5 STLESLIEMGFSSTRAEKALTATGNQGIEPAMDWLVEHED 44
>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2
SV=2
Length = 297
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL 672
L+ MGF EKA T N G+E AM+WL+ H DDPD+D PL
Sbjct: 10 LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 52
>sp|Q922Y1|UBXN1_MOUSE UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1
Length = 297
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL 672
L+ MGF EKA T N G+E AM+WL+ H DDPD+D PL
Sbjct: 10 LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 52
>sp|Q32KW2|UBXN1_BOVIN UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1
Length = 297
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLS 673
L+ MGF EKA T N G+E AM+WL+ H DDPD+D PL+
Sbjct: 10 LIEMGFPKGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLA 53
>sp|Q04323|UBXN1_HUMAN UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1 PE=1 SV=2
Length = 297
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL 672
L+ MGF EKA T N G+E AM+WL+ H DDPD+D PL
Sbjct: 10 LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 52
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHA---FCTRYYTQEPLKAAFEAAPADPTVDLN 362
L G G+ GL NLGN+C+L A +Q + ST FC R ++ + A
Sbjct: 206 LLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRA---------- 255
Query: 363 MQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQ 422
+LT E A A E + P F+AV P FS Q
Sbjct: 256 QELT----------------EAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 299
Query: 423 QDALEFF------LHF-VDQVER----VHSGKPEVDPTKSFKFGIEERISCP------SG 465
QDA EF LH +++ R + + P P + +EE P
Sbjct: 300 QDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEE----PELSDDDRA 355
Query: 466 KVAYNRRLDY----ILSLGIPLDEATNKEELAAFQKLKMERISE-GKDVTNEEIVRPRVP 520
+ + R L+ I+ L + ++ K + ++ E + + + +V
Sbjct: 356 NLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVS 415
Query: 521 LEACLSTFSAPEELPDFYSTAL---KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPK 577
L C + F+ EEL + + KT +TK + FP LVLH+ +F G + K
Sbjct: 416 LRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI-K 474
Query: 578 KLDVYIDVP 586
K V +D P
Sbjct: 475 KSSVGVDFP 483
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMP 671
L+ MGF+ EKA T N G+E AM+WL+ H DDPDID P
Sbjct: 10 LIEMGFSPSRAEKALAATGNQGIEPAMDWLVEHEDDPDIDEP 51
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 684 SKVETLLSFGFSEEVARNALKASGGD-IEKATDWIF---NNPDASTSS-----DMDAATS 734
S +E+L+ GFS A AL A+G IE A DW+ ++PD S D D+ T+
Sbjct: 5 STLESLIEMGFSPSRAEKALAATGNQGIEPAMDWLVEHEDDPDIDEPSVVVPEDSDSGTT 64
Query: 735 ST 736
T
Sbjct: 65 DT 66
>sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1
Length = 294
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 630 LVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMP 671
L+ MGF EKA +T N G+E AM+WL+ H +DPDID P
Sbjct: 10 LLEMGFGRNRAEKAVAHTGNQGIERAMDWLMEHENDPDIDEP 51
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 118/296 (39%), Gaps = 39/296 (13%)
Query: 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGL 372
GLVN GNSCY++ +Q + T CT + L +++ ++LN +L + GL
Sbjct: 489 GLVNCGNSCYMSCIIQCLLGTQELCTMF-----LNNSYQNH-----INLNSRLG--SKGL 536
Query: 373 LSGKYS-VPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLH 431
L+ +S + Q + ++ + P FK + + F QQD EF
Sbjct: 537 LARYFSQLIHQMYQYGKDIRKKMGNEKTAVIPTQFKIACGSINSSFKDNTQQDCQEFCQF 596
Query: 432 FVDQVERVHSGKPEVDPTKSFKFGIEE-RISCP---SGKVAYNRRLDYILSLGIPLDEAT 487
+D + + P K E+ R P + + + R L S+ + L +
Sbjct: 597 LLDGLHEDLNQCGNNPPLKELSEEAEKMREMMPMRLASAIEWERYLTTDFSVIVDLFQGQ 656
Query: 488 NKEELAAFQKLKMERISEGKDVTNEEIVRPRVP--------LEACLSTFSAPEEL---PD 536
+L ++ + T + VP L C + F+ E L
Sbjct: 657 YASQLQC-------KVCQRTSTTYQPFSVLSVPVPSTRTCTLTDCFTEFTKIETLEQEEQ 709
Query: 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDIS 592
+ + K + +TK +T P L++H+++F + K +V++ P ++D++
Sbjct: 710 WSCPSCKKRQPSTKKITITRLPRNLIIHLKRF----DNMLNKNNVFVSYPSVLDLT 761
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHA---FCTRYYTQEPLKAAFEAAPADPTVDLN 362
L G G+ GL NLGN+C+L A +Q + ST FC R ++ + A
Sbjct: 206 LLGSGHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGGGRA---------- 255
Query: 363 MQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQ 422
+LT E A A E + P F+AV P FS Q
Sbjct: 256 QELT----------------EAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 299
Query: 423 QDALEFF------LHF-VDQVER----VHSGKPEVDPTKSFKFGIEERISCP------SG 465
QDA EF LH +++ R + + P P + +EE P
Sbjct: 300 QDAQEFLKLLMERLHLEINRRGRRAPPILASSPAPHPPRLGGALLEE----PELSDDDRA 355
Query: 466 KVAYNRRLDY----ILSLGIPLDEATNKEELAAFQKLKMERISE-GKDVTNEEIVRPRVP 520
+ + R L+ I+ L + ++ K + ++ E + + + +V
Sbjct: 356 NLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVS 415
Query: 521 LEACLSTFSAPEELPDFYSTAL---KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPK 577
L C + F+ EEL + + KT +TK + FP LVLH+ +F G + K
Sbjct: 416 LRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI-K 474
Query: 578 KLDVYIDVP 586
K V +D P
Sbjct: 475 KSSVGVDFP 483
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51
PE=2 SV=1
Length = 711
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 66/328 (20%)
Query: 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQL 365
++ G GL+NLGN+C++ +Q + TH + + L + P++ L ++
Sbjct: 357 VYTVGLRGLINLGNTCFMNCIVQAL--THIPLLKDFF---LSDKHKCIMTSPSLCLVCEM 411
Query: 366 TKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAV-IAASHPEFSSMRQQD 424
+ L H + SG ++ IP ++ + I A H + RQQD
Sbjct: 412 SSLFHAMYSG--------------------SRTPHIPYKLLHLIWIHAEH--LAGYRQQD 449
Query: 425 ALEFFLHFVDQVERVHS-----GKPEVDPT-------KSFKFGIEERISCPSGKVAYNRR 472
A EF + +D + R HS G+ +P + F G++ ++C + + +
Sbjct: 450 AHEFLIAILDVLHR-HSKDDSGGQEANNPNCCNCIIDQIFTGGLQSDVTCQACH-SVSTT 507
Query: 473 LD--YILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVP-LEACLSTFS 529
+D + +SL +P AT F ER V+ ++ + P +P L CL F+
Sbjct: 508 IDPCWDISLDLPGSCAT-------FDSQNPERAD--STVSRDDHI-PGIPSLTDCLQWFT 557
Query: 530 APEEL---PDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP 586
PE L + ++ +TK + P H+++F G +K++ +I P
Sbjct: 558 RPEHLGSSAKIKCNSCQSYQESTKQLTMKKLPIVACFHLKRF-EHVGKQRRKINTFISFP 616
Query: 587 DIIDIS-------HMRSKGLQPGEELLP 607
+D++ R K QP + +P
Sbjct: 617 LELDMTPFLASTKESRMKEGQPPTDCVP 644
>sp|E7F6T8|UBP37_DANRE Ubiquitin carboxyl-terminal hydrolase 37 OS=Danio rerio GN=usp37
PE=2 SV=1
Length = 937
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 105/290 (36%), Gaps = 86/290 (29%)
Query: 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQE-PLKAAFEAAPADPTVDLNMQLTK 367
P G NLGN+CY+ A +Q +FS +F Q P K V +N L +
Sbjct: 319 PPLQGFSNLGNTCYMNAILQSLFSLPSFSNDLLKQGIPWK----------RVPINALLRR 368
Query: 368 LAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALE 427
AH L S P +KD R K I+++ FS Q DA E
Sbjct: 369 FAHLLAKKDISPPEVKKDLL----------------RRVKNAISSTAERFSGYMQNDAHE 412
Query: 428 FFLHFVDQ----VERVHSG----------------KPEVDPTK--------SFKFGIEER 459
F +DQ VE+++ EVD ++ + +F ++
Sbjct: 413 FLSQCLDQLKEDVEKINKSWKNEPSAWDEPQSTRLADEVDTSRIYTCPVTVNMEFEVQHT 472
Query: 460 ISCPS-GKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPR 518
I+C S G+V R LS+ +P T L M I + D+
Sbjct: 473 ITCKSCGEVVLKREQFNDLSIDLPRRRKT----------LPMRSIQDSLDL--------- 513
Query: 519 VPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKF 568
F EE+ YS + AT S + P L+LH++++
Sbjct: 514 ---------FFRMEEIE--YSCEKCSGKAATVSHKFSRLPRVLILHLKRY 552
>sp|Q6GLV4|UBX1B_XENLA UBX domain-containing protein 1-B OS=Xenopus laevis GN=ubxn1-b PE=2
SV=1
Length = 290
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 621 VANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMP 671
+A+ + L+ MGF+ EKA T N G+E AM+WL+ H DDPDI P
Sbjct: 1 MADCSALESLIEMGFSPSRAEKALSATGNQGIEPAMDWLVEHEDDPDIKEP 51
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 682 DQSKVETLLSFGFSEEVARNALKASGGD-IEKATDWIFNNPD 722
D S +E+L+ GFS A AL A+G IE A DW+ + D
Sbjct: 3 DCSALESLIEMGFSPSRAEKALSATGNQGIEPAMDWLVEHED 44
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA 369
G GL NLGNSCY+ + +Q M TH T+Y+ L ++E D+N
Sbjct: 277 GLCGLYNLGNSCYMNSALQCMIHTHEL-TKYF----LSDSYEK-------DINYNNPLGM 324
Query: 370 HGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFF 429
G ++ Y+ + A+ + P FK +I + FS RQQD+ EF
Sbjct: 325 MGKVALSYASLLKMIHHTAD--------MHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFI 376
Query: 430 LHFVD 434
F+D
Sbjct: 377 AFFLD 381
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 519 VPLEACLSTFSAPEELP---DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG 573
+ LE CL FS PE+L +Y KA ATK + P LV+H+ +F G
Sbjct: 690 ITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGG 747
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 115/296 (38%), Gaps = 39/296 (13%)
Query: 312 TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHG 371
GL N+GNSCY+ +Q +F+ T E +K A +N Q + G
Sbjct: 525 VGLENMGNSCYINCIIQCIFA---------TTELIKIFLNGTYAK---HINKQSKLGSKG 572
Query: 372 LLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLH 431
+LS ++ ++ N++ K + FK A+ + F QQD LEF
Sbjct: 573 VLSHNFAKLLKDM-YEENSSKKIGKKHGAVKTLQFKMACASVNSLFKDASQQDCLEFCQF 631
Query: 432 FVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVA----YNRRLDYILSLGIPLDEAT 487
+D + + P K E+ S +VA + R L S+ + L +
Sbjct: 632 LLDGLHEDLNQCGANPPLKELSPEAEKMRENLSLRVASSIEWERYLTTDFSIIVDLFQGQ 691
Query: 488 NKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEA--------CLSTFSAPEEL---PD 536
+L ++ T + VP+ + C F+ E L
Sbjct: 692 YASQLRC-------KVCNRTSTTYQAFSVLSVPVPSGKSCGLLDCFIEFTKTENLEVDEQ 744
Query: 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDIS 592
++ + K K +TK +T P L++H+++F + K ++++ P I+D++
Sbjct: 745 WFCPSCKKKQPSTKKLTITRLPRNLIIHLKRF----DNMMNKNNIFVRYPQILDLT 796
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA 369
G TGLVNLGN+CY+ + +Q + H R Y L +E ++N +
Sbjct: 362 GTTGLVNLGNTCYMNSALQCL--VHIPQLRDYF---LYDGYED-------EINEENPLGY 409
Query: 370 HGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFF 429
HG ++ +S Q+ + + PP MFK+ I + FS QQD+ EF
Sbjct: 410 HGYVARAFSDLVQK---LFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFL 466
Query: 430 LHFVDQ--------VERVHSGKPEVDP 448
+D +++ ++ KP + P
Sbjct: 467 AFLLDSLHEDLNRIIKKEYTEKPSLSP 493
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 519 VPLEACLSTFSAPEEL---PDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWV 575
+ L+ CL FS PE L +Y K ATK L + PD L++H+++F + +
Sbjct: 962 ITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSF- 1020
Query: 576 PKKLDVYIDVPDIIDISHMR 595
K+D ++ P I D+ R
Sbjct: 1021 SDKIDATVNFP-ITDLDLSR 1039
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 305 PLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA-APADPTVDLNM 363
P PG GL NLGN+C++ + +Q + +T A T Y+ ++ +A P ++
Sbjct: 295 PHIQPGLCGLGNLGNTCFMNSALQCLSNT-APLTEYFLKDEYEAEINRDNPLGMKGEIAE 353
Query: 364 QLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQ 423
+L + SG+ DT + PRMFK + P+FS +QQ
Sbjct: 354 AYAELIKQMWSGR------------------DTH---VAPRMFKTQVGRFAPQFSGYQQQ 392
Query: 424 DALEFFLHFVD----QVERVHSGKPEVDP 448
D+ E +D + RV KP ++P
Sbjct: 393 DSQELLAFILDGLHEDLNRVKK-KPYLEP 420
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 519 VPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWV 575
V L C+ F+ E L + +Y K ATK L S P LV+H+++F W
Sbjct: 775 VALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWR 834
Query: 576 PKKLDVYIDVP 586
KLD ++ P
Sbjct: 835 -DKLDTVVEFP 844
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 176 IIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGT 235
I+ P W C C+ +++W L+ + CGR HA++H+KE +PLA+++
Sbjct: 18 ILNPQKWHCVDCNTTESVWACLSCSHVACGRYI------EEHALQHFKEQHHPLALEVNE 71
Query: 236 ITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSL--QKTEMTTAERELDQNTNFDW 293
+ V+ Y DD V++ L S++ Q E+TT ++++ +
Sbjct: 72 LY-------VYCYLCDDYVLNDNATGDLKLLRSTLSAIKSQCYEVTTRSGRTLRSSSANG 124
Query: 294 NRIQESGQDVE 304
+++ S Q+++
Sbjct: 125 DQLSPSTQELQ 135
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 65/178 (36%), Gaps = 28/178 (15%)
Query: 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFE--AAPADPTVDL 361
P PG TGL NLGN+CY+ + +QV+ H F + + L A E A+ + L
Sbjct: 287 RPTVTPGVTGLRNLGNTCYMNSILQVLSHLHVF-RECFLRLDLNQALELLASAVSRKLGL 345
Query: 362 NMQLTKLAHGL-----LSGKYSVPA-----QEKDAAANAATTTDTKQEGIP--------- 402
+ Q GL LSG S Q K+ ++ + P
Sbjct: 346 SAQRVIQPKGLNQGSGLSGGASRSRNMELIQPKEPSSKHISLCHELHTLFPVMWSGKWAL 405
Query: 403 --PRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQV----ERVHSGKPEVDPTKSFKF 454
P + P F QQDA EF +D+V ER + P P +
Sbjct: 406 VSPFAMLHSVWQLIPAFRGYAQQDAQEFLCELLDKVQHELERTRTLTPATVPANQRRL 463
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 28/149 (18%)
Query: 305 PLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA-APADPTVDLNM 363
P PG GL NLGN+C++ + +Q + +T T Y+ ++ +A P ++
Sbjct: 295 PHIQPGLCGLGNLGNTCFMNSALQCLSNTGPL-TEYFLKDEYEAEINRDNPLGMKGEIAE 353
Query: 364 QLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQ 423
+L + SG+ DT + PRMFK + P+FS +QQ
Sbjct: 354 AYAELIKQMWSGR------------------DTH---VAPRMFKTQVGRFAPQFSGYQQQ 392
Query: 424 DALEFFLHFVD----QVERVHSGKPEVDP 448
D+ E +D + RV KP ++P
Sbjct: 393 DSQELLAFILDGLHEDLNRVKK-KPYLEP 420
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 519 VPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWV 575
+ L C+ F+ E L + +Y K ATK L S P LV+H+++F W
Sbjct: 774 IALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWR 833
Query: 576 PKKLDVYIDVP 586
KLD ++ P
Sbjct: 834 -DKLDTVVEFP 843
>sp|Q8BGG7|UBS3B_MOUSE Ubiquitin-associated and SH3 domain-containing protein B OS=Mus
musculus GN=Ubash3b PE=1 SV=1
Length = 638
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 603 EELLPEGGPE-DEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661
EEL + P D +Q V + + L+SMGF +KA +T V+ A +WL S
Sbjct: 5 EELYSKVTPRRDRLQRPGTVKHGSALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFS 64
Query: 662 HMDDPDIDMPLSQE 675
H+ DP +D PL +E
Sbjct: 65 HVGDPFLDDPLPRE 78
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 115/301 (38%), Gaps = 54/301 (17%)
Query: 297 QESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPAD 356
+E G + P+ Y GLVN GN+CY + +Q ++ FC P + A +
Sbjct: 25 KEIGSEQFPV-NEHYFGLVNFGNTCYCNSVLQALY----FC------RPFREKILAYRSQ 73
Query: 357 PTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPE 416
P N+ LT LA +S+ Q++ IPP+ F + +
Sbjct: 74 PRRKENL-LTCLADLF----HSIANQKRKVGV------------IPPKKFITRLRKENEL 116
Query: 417 FSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYI 476
F + QQDA EF + ++ + + + + D +GK+A N LD
Sbjct: 117 FDNYMQQDAHEFLNYLLNTIADLLQEERKQDK--------------QNGKLA-NGTLDSQ 161
Query: 477 LSLGIP-----LDEATNKEELAAFQKLKMERI-SEGKDVTNEEI-VRPRVPLEACLSTFS 529
+ P + E + L E I S+ +D + + V + CL FS
Sbjct: 162 NNNSTPPSTTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFS 221
Query: 530 APEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKF-VMEAGWVPKKLDVYIDV 585
E L +Y ++K A K + P L LH+++F ME KL +
Sbjct: 222 NTETLCSEYKYYCEECRSKQEAHKRMRVKKLPMILALHLKRFKYMEQLQRYTKLSYRVVF 281
Query: 586 P 586
P
Sbjct: 282 P 282
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 290 NFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAA 349
N+D++ E G++ E PG GL NLGN+C++ + Q + +T T Y+ + +
Sbjct: 244 NYDYS---EPGRNNEQ---PGLCGLSNLGNTCFMNSAFQCLSNTPPL-TEYFLNDKYQEE 296
Query: 350 FE-AAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKA 408
P ++ +L + SGKYS + PR FK
Sbjct: 297 LNFDNPLGMRGEIAKSYAELIKQMWSGKYSY---------------------VTPRAFKT 335
Query: 409 VIAASHPEFSSMRQQDALEFFLHFVD 434
+ P+FS +QQD E +D
Sbjct: 336 QVGRFAPQFSGYQQQDCQELLAFLLD 361
Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 516 RPRVPLEACLSTFSAPEEL---PDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA 572
+P V L+ C+ F+ E+L +Y K ATK L S P LV+H+++F +
Sbjct: 754 KPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY-S 812
Query: 573 GWVPKKLDVYIDVP 586
++ KLD +D P
Sbjct: 813 RYMRDKLDTLVDFP 826
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 45/345 (13%)
Query: 124 PSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWK 183
P+ LPEK + + + + + T Q ++A+++ + I + W
Sbjct: 6 PTKALPEKAKRSKRPTVPHDEDSSDDIAVGLTC---QHVSHAISVNHVKRA--IAENLWS 60
Query: 184 -CAKCDKRDNLW---LNLTDGMILCGRRNWDGTGGNN---HAVEHYKETGYPLAVKLGTI 236
C++C K + L LT + LC + + G G N+ H+++H+K + + I
Sbjct: 61 VCSECLKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSS----RTEPHCI 116
Query: 237 TSDLEGADVFSYPEDDSVV----DPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFD 292
+L ++ Y D+ + +LAQ + F S Q + + + ++ D
Sbjct: 117 IINLSTWIIWCYECDEKLSTHCNKKVLAQIVDFLQKHASKTQTSAFSRIMKLCEEKCETD 176
Query: 293 WNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA 352
IQ+ G+ G+ NLGN+C+ A MQ + T+ + +
Sbjct: 177 --EIQKGGK----CRNLSVRGITNLGNTCFFNAVMQNLAQTYTLTDLMNEIKESSTKLKI 230
Query: 353 AP-ADPTVD-LNMQLTK---LAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFK 407
P +D +D L ++L++ L L +S+ EK + P++
Sbjct: 231 FPSSDSQLDPLVVELSRPGPLTSALFLFLHSMKETEKGP--------------LSPKVLF 276
Query: 408 AVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSF 452
+ P F +QQD+ E + +D V + + + K+F
Sbjct: 277 NQLCQKAPRFKDFQQQDSQELLHYLLDAVRTEETKRIQASILKAF 321
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 23/127 (18%)
Query: 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEA-APADPTVDLNMQLTK 367
PG GL NLGN+C++ + +Q + +T T Y+ + + P ++ +
Sbjct: 285 PGLCGLSNLGNTCFMNSAIQCLSNTPPL-TEYFLNDKYQDELNMDNPLGMRGEIAKSYAE 343
Query: 368 LAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALE 427
L + SGKYS + PR FK + P+FS +QQD E
Sbjct: 344 LIKQMWSGKYSY---------------------VTPRAFKTQVGRFAPQFSGYQQQDCQE 382
Query: 428 FFLHFVD 434
+D
Sbjct: 383 LLAFLLD 389
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 519 VPLEACLSTFSAPEEL---PDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWV 575
+ L+ C+ F+ E+L +Y K ATK L S P LV+H+++F + ++
Sbjct: 786 MKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY-SRYM 844
Query: 576 PKKLDVYIDVP 586
KLD +D P
Sbjct: 845 RDKLDTLVDFP 855
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46
PE=2 SV=1
Length = 366
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 105/283 (37%), Gaps = 46/283 (16%)
Query: 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAH 370
Y GLVN GN+CY + +Q ++ FC P + A A N+ LT LA
Sbjct: 34 YFGLVNFGNTCYCNSVLQALY----FC------RPFRENVLAYKAQQKKKENL-LTCLAD 82
Query: 371 GLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFL 430
+S+ Q+K IPP+ F + + + F + QQDA EF
Sbjct: 83 LF----HSIATQKKKVGV------------IPPKKFISRLRKENDLFDNYMQQDAHEFLN 126
Query: 431 HFVDQVERV-HSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNK 489
+ ++ + + K + K G + A N + + I TN+
Sbjct: 127 YLLNTIADILQEEKKQEKQNGKLKNG-------NMNEPAENNKPELTWVHEIFQGTLTNE 179
Query: 490 EELAAFQKLKMERI-SEGKDVTNEEI-VRPRVPLEACLSTFSAPEEL---PDFYSTALKA 544
L E + S+ +D + + V + CL FS E L +Y +
Sbjct: 180 TRC-----LNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCS 234
Query: 545 KTTATKSAGLTSFPDYLVLHMRKF-VMEAGWVPKKLDVYIDVP 586
K A K + P L LH+++F ME KL + P
Sbjct: 235 KQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFP 277
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46
PE=1 SV=1
Length = 366
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 105/283 (37%), Gaps = 46/283 (16%)
Query: 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAH 370
Y GLVN GN+CY + +Q ++ FC P + A A N+ LT LA
Sbjct: 34 YFGLVNFGNTCYCNSVLQALY----FC------RPFRENVLAYKAQQKKKENL-LTCLAD 82
Query: 371 GLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFL 430
+S+ Q+K IPP+ F + + + F + QQDA EF
Sbjct: 83 LF----HSIATQKKKVGV------------IPPKKFISRLRKENDLFDNYMQQDAHEFLN 126
Query: 431 HFVDQVERV-HSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNK 489
+ ++ + + K + K G + A N + + I TN+
Sbjct: 127 YLLNTIADILQEEKKQEKQNGKLKNG-------NMNEPAENNKPELTWVHEIFQGTLTNE 179
Query: 490 EELAAFQKLKMERI-SEGKDVTNEEI-VRPRVPLEACLSTFSAPEEL---PDFYSTALKA 544
L E + S+ +D + + V + CL FS E L +Y +
Sbjct: 180 TRC-----LNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCS 234
Query: 545 KTTATKSAGLTSFPDYLVLHMRKF-VMEAGWVPKKLDVYIDVP 586
K A K + P L LH+++F ME KL + P
Sbjct: 235 KQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFP 277
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46
PE=1 SV=1
Length = 366
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 105/283 (37%), Gaps = 46/283 (16%)
Query: 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAH 370
Y GLVN GN+CY + +Q ++ FC P + A A N+ LT LA
Sbjct: 34 YFGLVNFGNTCYCNSVLQALY----FC------RPFRENVLAYKAQQKKKENL-LTCLAD 82
Query: 371 GLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFL 430
+S+ Q+K IPP+ F + + + F + QQDA EF
Sbjct: 83 LF----HSIATQKKKVGV------------IPPKKFISRLRKENDLFDNYMQQDAHEFLN 126
Query: 431 HFVDQVERV-HSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNK 489
+ ++ + + K + K G + A N + + I TN+
Sbjct: 127 YLLNTIADILQEEKKQEKQNGKLKNG-------NMNEPAENNKPELTWVHEIFQGTLTNE 179
Query: 490 EELAAFQKLKMERI-SEGKDVTNEEI-VRPRVPLEACLSTFSAPEEL---PDFYSTALKA 544
L E + S+ +D + + V + CL FS E L +Y +
Sbjct: 180 TRC-----LNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCS 234
Query: 545 KTTATKSAGLTSFPDYLVLHMRKF-VMEAGWVPKKLDVYIDVP 586
K A K + P L LH+++F ME KL + P
Sbjct: 235 KQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFP 277
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKL 368
PG GL NLGN+C++ + +Q + +T A T Y+ LK +EA ++N
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNT-APLTDYF----LKDEYEA-------EINRDNPLG 346
Query: 369 AHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEF 428
G ++ Y+ ++ + +A + PRMFK + P+FS +QQD+ E
Sbjct: 347 MKGEIAEAYAELIKQMWSGRDAH---------VAPRMFKTQVGRFAPQFSGYQQQDSQEL 397
Query: 429 FLHFVD 434
+D
Sbjct: 398 LAFLLD 403
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 519 VPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWV 575
V L C+ F+ E L + +Y K ATK L S P LV+H+++F W
Sbjct: 776 VALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWR 835
Query: 576 PKKLDVYIDVP 586
KLD ++ P
Sbjct: 836 -DKLDTVVEFP 845
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,487,389
Number of Sequences: 539616
Number of extensions: 14032211
Number of successful extensions: 35765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 35266
Number of HSP's gapped (non-prelim): 368
length of query: 812
length of database: 191,569,459
effective HSP length: 126
effective length of query: 686
effective length of database: 123,577,843
effective search space: 84774400298
effective search space used: 84774400298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)