Query 003533
Match_columns 812
No_of_seqs 521 out of 2722
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 01:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0944 Ubiquitin-specific pro 100.0 1E-173 3E-178 1423.3 47.7 709 1-770 1-725 (763)
2 COG5207 UBP14 Isopeptidase T [ 100.0 9E-130 2E-134 1041.1 28.9 685 8-770 3-706 (749)
3 cd02669 Peptidase_C19M A subfa 100.0 2.4E-57 5.3E-62 516.3 25.0 341 175-596 9-371 (440)
4 cd02658 Peptidase_C19B A subfa 100.0 1.7E-42 3.6E-47 378.6 22.2 251 313-594 1-252 (311)
5 cd02660 Peptidase_C19D A subfa 100.0 4.7E-41 1E-45 369.7 22.1 244 312-597 1-256 (328)
6 cd02671 Peptidase_C19O A subfa 100.0 1.1E-39 2.5E-44 358.0 21.9 237 304-596 17-265 (332)
7 cd02663 Peptidase_C19G A subfa 100.0 6.6E-40 1.4E-44 356.5 19.1 204 313-595 1-227 (300)
8 cd02668 Peptidase_C19L A subfa 100.0 1.4E-39 3E-44 357.7 21.3 225 313-597 1-238 (324)
9 KOG1865 Ubiquitin carboxyl-ter 100.0 3.3E-40 7.1E-45 363.6 14.3 225 310-597 107-344 (545)
10 cd02657 Peptidase_C19A A subfa 100.0 9.4E-39 2E-43 348.1 18.9 225 313-596 1-236 (305)
11 cd02667 Peptidase_C19K A subfa 100.0 4.3E-39 9.4E-44 346.5 15.5 185 313-597 1-189 (279)
12 cd02664 Peptidase_C19H A subfa 100.0 9E-38 2E-42 343.6 18.5 209 313-596 1-215 (327)
13 cd02661 Peptidase_C19E A subfa 100.0 1.4E-37 3.1E-42 337.6 18.7 224 311-597 1-240 (304)
14 cd02659 peptidase_C19C A subfa 100.0 7E-37 1.5E-41 337.5 20.7 230 310-600 1-236 (334)
15 COG5560 UBP12 Ubiquitin C-term 100.0 1.4E-37 3.1E-42 341.8 7.8 267 309-597 263-756 (823)
16 KOG1873 Ubiquitin-specific pro 100.0 3.3E-37 7.1E-42 344.9 9.0 264 190-481 90-399 (877)
17 COG5533 UBP5 Ubiquitin C-termi 100.0 5E-36 1.1E-40 306.1 12.9 235 310-609 70-345 (415)
18 KOG1867 Ubiquitin-specific pro 100.0 7.6E-33 1.6E-37 313.9 15.4 350 179-597 41-415 (492)
19 cd02662 Peptidase_C19F A subfa 100.0 1.2E-32 2.5E-37 290.1 15.0 156 313-589 1-158 (240)
20 cd02666 Peptidase_C19J A subfa 100.0 7.1E-30 1.5E-34 280.4 16.1 198 311-594 1-231 (343)
21 KOG1868 Ubiquitin C-terminal h 100.0 2.5E-30 5.3E-35 298.2 8.1 237 308-594 298-577 (653)
22 KOG2026 Spindle pole body prot 100.0 2.2E-28 4.8E-33 257.2 20.0 353 160-597 11-374 (442)
23 PF00443 UCH: Ubiquitin carbox 100.0 4.6E-28 9.9E-33 255.9 17.2 186 311-597 1-200 (269)
24 cd02674 Peptidase_C19R A subfa 100.0 1.3E-28 2.9E-33 256.9 11.9 138 421-595 21-163 (230)
25 cd02673 Peptidase_C19Q A subfa 99.9 4.5E-27 9.8E-32 247.4 12.5 127 411-571 22-160 (245)
26 cd02257 Peptidase_C19 Peptidas 99.9 6.9E-26 1.5E-30 235.8 17.0 147 421-597 21-179 (255)
27 KOG1866 Ubiquitin carboxyl-ter 99.9 1.8E-27 3.9E-32 266.0 4.7 233 309-601 93-332 (944)
28 COG5077 Ubiquitin carboxyl-ter 99.9 1.3E-26 2.9E-31 259.1 4.3 231 308-604 190-426 (1089)
29 KOG1863 Ubiquitin carboxyl-ter 99.9 3.9E-25 8.5E-30 274.1 11.0 227 309-597 167-399 (1093)
30 cd02665 Peptidase_C19I A subfa 99.9 3.6E-24 7.8E-29 221.7 11.6 134 422-594 22-164 (228)
31 KOG1870 Ubiquitin C-terminal h 99.9 1.5E-23 3.4E-28 254.0 8.6 156 308-484 243-429 (842)
32 KOG4598 Putative ubiquitin-spe 99.9 4E-24 8.6E-29 236.7 2.2 214 307-603 83-302 (1203)
33 PF13423 UCH_1: Ubiquitin carb 99.8 1.1E-20 2.4E-25 205.1 15.2 228 312-600 1-243 (295)
34 cd02672 Peptidase_C19P A subfa 99.8 2.1E-20 4.7E-25 199.4 15.1 182 309-596 13-204 (268)
35 KOG1871 Ubiquitin-specific pro 99.8 8.4E-19 1.8E-23 186.2 6.8 253 309-599 26-345 (420)
36 KOG1864 Ubiquitin-specific pro 99.7 1.3E-17 2.7E-22 192.9 8.0 257 309-639 230-526 (587)
37 PF02148 zf-UBP: Zn-finger in 99.6 5.3E-17 1.1E-21 134.5 2.9 61 184-257 1-62 (63)
38 KOG1872 Ubiquitin-specific pro 99.6 4.4E-17 9.6E-22 177.6 1.3 231 310-600 104-349 (473)
39 cd02670 Peptidase_C19N A subfa 99.6 1.3E-15 2.8E-20 159.4 8.9 118 421-599 22-139 (241)
40 KOG0804 Cytoplasmic Zn-finger 99.6 9.2E-16 2E-20 165.3 2.9 105 130-255 183-289 (493)
41 KOG0944 Ubiquitin-specific pro 99.6 7E-15 1.5E-19 165.1 9.2 106 679-790 568-674 (763)
42 COG5207 UBP14 Isopeptidase T [ 99.3 5.6E-13 1.2E-17 145.2 4.1 110 672-788 548-658 (749)
43 KOG2561 Adaptor protein NUB1, 99.3 6.1E-13 1.3E-17 143.3 4.1 154 620-789 300-467 (568)
44 TIGR00601 rad23 UV excision re 99.1 1.1E-10 2.3E-15 129.4 10.0 42 682-723 337-378 (378)
45 KOG0011 Nucleotide excision re 99.1 2.9E-10 6.4E-15 119.7 10.1 100 622-722 134-338 (340)
46 smart00290 ZnF_UBP Ubiquitin C 99.1 1.2E-10 2.5E-15 92.0 4.3 48 183-236 1-48 (50)
47 PF00627 UBA: UBA/TS-N domain; 98.9 2.5E-09 5.5E-14 78.8 4.3 37 681-717 1-37 (37)
48 KOG2561 Adaptor protein NUB1, 98.8 2E-08 4.2E-13 109.1 10.9 100 622-726 374-473 (568)
49 PF00627 UBA: UBA/TS-N domain; 98.8 8.4E-09 1.8E-13 76.0 4.1 37 622-659 1-37 (37)
50 cd00194 UBA Ubiquitin Associat 98.7 2.1E-08 4.5E-13 74.3 5.3 38 682-719 1-38 (38)
51 smart00165 UBA Ubiquitin assoc 98.7 2.2E-08 4.8E-13 73.8 5.1 37 682-718 1-37 (37)
52 smart00165 UBA Ubiquitin assoc 98.6 1.1E-07 2.5E-12 69.9 5.1 37 623-660 1-37 (37)
53 cd00194 UBA Ubiquitin Associat 98.5 1.5E-07 3.4E-12 69.6 5.4 38 623-661 1-38 (38)
54 KOG1275 PAB-dependent poly(A) 98.1 3.7E-06 8E-11 98.5 7.1 254 309-598 497-766 (1118)
55 TIGR00601 rad23 UV excision re 97.4 0.00014 3.1E-09 81.1 5.4 43 681-723 155-197 (378)
56 smart00290 ZnF_UBP Ubiquitin C 97.3 0.00019 4E-09 56.5 3.2 35 40-74 10-48 (50)
57 KOG0011 Nucleotide excision re 96.6 0.0033 7.1E-08 67.3 6.2 44 680-723 133-176 (340)
58 KOG1864 Ubiquitin-specific pro 96.5 0.0031 6.7E-08 74.3 5.4 115 314-442 34-154 (587)
59 KOG2689 Predicted ubiquitin re 96.0 0.0083 1.8E-07 62.6 4.7 41 627-667 4-45 (290)
60 PF14555 UBA_4: UBA-like domai 94.9 0.057 1.2E-06 41.1 4.9 40 684-723 2-42 (43)
61 PF02148 zf-UBP: Zn-finger in 94.6 0.019 4.2E-07 47.5 1.8 34 38-71 8-45 (63)
62 PF02845 CUE: CUE domain; Int 94.4 0.088 1.9E-06 39.8 4.9 37 683-719 2-40 (42)
63 KOG2689 Predicted ubiquitin re 93.3 0.1 2.2E-06 54.7 4.7 40 687-726 5-46 (290)
64 smart00546 CUE Domain that may 92.4 0.31 6.7E-06 37.0 5.1 38 682-719 2-41 (43)
65 PF09288 UBA_3: Fungal ubiquit 89.5 0.34 7.4E-06 38.7 2.8 29 621-649 7-35 (55)
66 KOG0418 Ubiquitin-protein liga 88.9 0.44 9.5E-06 47.3 3.7 40 680-719 160-199 (200)
67 PRK12332 tsf elongation factor 88.9 0.64 1.4E-05 47.6 5.1 40 681-720 3-43 (198)
68 PF09288 UBA_3: Fungal ubiquit 88.3 0.48 1E-05 37.8 2.9 27 681-707 8-34 (55)
69 TIGR00116 tsf translation elon 88.1 0.69 1.5E-05 50.1 5.0 41 681-721 3-44 (290)
70 PRK09377 tsf elongation factor 87.8 0.76 1.6E-05 49.8 5.1 40 681-720 4-44 (290)
71 smart00546 CUE Domain that may 86.7 1.5 3.3E-05 33.1 4.9 38 623-662 2-42 (43)
72 PRK06369 nac nascent polypepti 86.5 1.3 2.9E-05 41.0 5.2 40 680-719 74-114 (115)
73 PF05408 Peptidase_C28: Foot-a 86.3 0.69 1.5E-05 46.0 3.4 32 310-341 32-65 (193)
74 PF09416 UPF1_Zn_bind: RNA hel 86.1 0.75 1.6E-05 44.7 3.5 64 183-252 2-68 (152)
75 CHL00098 tsf elongation factor 86.0 1.1 2.4E-05 46.0 4.9 38 683-720 2-40 (200)
76 KOG0418 Ubiquitin-protein liga 84.6 1 2.2E-05 44.8 3.7 39 622-661 161-199 (200)
77 TIGR00264 alpha-NAC-related pr 84.4 1.8 3.8E-05 40.1 4.9 38 680-717 76-114 (116)
78 PF14555 UBA_4: UBA-like domai 80.6 3.9 8.5E-05 31.0 4.8 40 625-665 2-42 (43)
79 PF02845 CUE: CUE domain; Int 80.0 4.2 9E-05 30.6 4.8 37 624-661 2-40 (42)
80 PF07499 RuvA_C: RuvA, C-termi 76.5 5.7 0.00012 30.8 4.7 26 623-648 3-28 (47)
81 PF15499 Peptidase_C98: Ubiqui 76.3 1.9 4.2E-05 45.2 2.7 28 315-342 6-33 (275)
82 PRK12332 tsf elongation factor 75.3 4.7 0.0001 41.3 5.1 40 622-662 3-43 (198)
83 KOG0010 Ubiquitin-like protein 75.3 3.9 8.5E-05 46.7 4.9 37 683-719 455-492 (493)
84 TIGR00116 tsf translation elon 75.0 4.3 9.3E-05 44.1 5.0 41 622-663 3-44 (290)
85 COG0264 Tsf Translation elonga 74.6 4.7 0.0001 43.4 5.0 40 681-720 4-44 (296)
86 PRK09377 tsf elongation factor 74.2 4.7 0.0001 43.8 5.0 41 622-663 4-45 (290)
87 PF07499 RuvA_C: RuvA, C-termi 73.7 4.2 9.2E-05 31.5 3.4 24 683-706 4-27 (47)
88 PF11547 E3_UbLigase_EDD: E3 u 69.3 7.3 0.00016 30.1 3.6 44 680-723 7-52 (53)
89 COG1308 EGD2 Transcription fac 68.9 9.1 0.0002 35.8 4.9 38 680-717 82-120 (122)
90 KOG1873 Ubiquitin-specific pro 68.8 11 0.00023 45.3 6.6 80 518-597 677-786 (877)
91 PF11626 Rap1_C: TRF2-interact 67.3 7.1 0.00015 34.5 3.8 38 686-723 1-38 (87)
92 PRK06369 nac nascent polypepti 63.5 17 0.00036 33.9 5.5 41 620-661 73-114 (115)
93 CHL00098 tsf elongation factor 62.9 7.5 0.00016 39.9 3.5 37 625-662 3-40 (200)
94 KOG0010 Ubiquitin-like protein 62.1 11 0.00024 43.2 5.0 37 624-661 455-492 (493)
95 PRK14890 putative Zn-ribbon RN 61.3 3 6.5E-05 33.9 0.2 22 182-203 37-58 (59)
96 COG4008 Predicted metal-bindin 61.0 31 0.00066 32.3 6.7 39 680-719 112-150 (153)
97 cd02669 Peptidase_C19M A subfa 60.0 6.9 0.00015 45.2 3.1 35 37-71 24-62 (440)
98 COG2888 Predicted Zn-ribbon RN 59.9 3.2 6.9E-05 33.6 0.2 22 182-203 39-60 (61)
99 PF11626 Rap1_C: TRF2-interact 57.5 13 0.00028 32.8 3.6 37 627-664 1-37 (87)
100 TIGR00264 alpha-NAC-related pr 57.3 22 0.00047 33.2 5.1 38 622-660 77-115 (116)
101 KOG1802 RNA helicase nonsense 55.8 11 0.00025 44.7 3.7 66 182-252 61-128 (935)
102 cd02657 Peptidase_C19A A subfa 47.7 12 0.00025 40.7 2.2 26 748-773 237-265 (305)
103 cd02668 Peptidase_C19L A subfa 47.5 12 0.00026 41.2 2.3 25 748-772 242-269 (324)
104 cd02658 Peptidase_C19B A subfa 47.3 12 0.00026 40.8 2.2 18 748-765 248-265 (311)
105 cd02664 Peptidase_C19H A subfa 46.5 14 0.0003 40.8 2.6 26 748-773 239-267 (327)
106 KOG0804 Cytoplasmic Zn-finger 43.0 16 0.00036 41.3 2.4 38 39-76 238-279 (493)
107 PRK14604 ruvA Holliday junctio 41.3 38 0.00083 34.7 4.6 24 683-706 150-173 (195)
108 cd02670 Peptidase_C19N A subfa 39.9 20 0.00044 38.0 2.4 20 313-332 1-21 (241)
109 cd02674 Peptidase_C19R A subfa 39.6 24 0.00052 36.3 2.9 20 313-332 1-20 (230)
110 TIGR00084 ruvA Holliday juncti 39.2 42 0.00091 34.2 4.5 25 682-706 147-171 (191)
111 cd02673 Peptidase_C19Q A subfa 39.1 20 0.00042 38.1 2.2 29 314-342 2-30 (245)
112 PF08715 Viral_protease: Papai 38.7 76 0.0016 35.1 6.7 78 310-438 101-179 (320)
113 cd02663 Peptidase_C19G A subfa 38.5 16 0.00034 39.8 1.4 17 748-764 233-249 (300)
114 KOG1071 Mitochondrial translat 37.9 49 0.0011 36.1 4.9 40 681-720 45-85 (340)
115 PF08938 HBS1_N: HBS1 N-termin 37.6 17 0.00036 31.5 1.2 27 695-721 45-71 (79)
116 COG0264 Tsf Translation elonga 37.5 34 0.00074 37.0 3.7 39 623-662 5-44 (296)
117 PF11372 DUF3173: Domain of un 37.4 31 0.00066 28.3 2.5 22 628-649 7-28 (59)
118 PRK14601 ruvA Holliday junctio 36.9 50 0.0011 33.5 4.6 25 682-706 142-166 (183)
119 COG4008 Predicted metal-bindin 36.9 72 0.0016 30.0 5.1 38 622-661 113-150 (153)
120 COG3478 Predicted nucleic-acid 35.3 38 0.00082 28.1 2.7 35 537-571 5-41 (68)
121 PRK14601 ruvA Holliday junctio 34.8 60 0.0013 32.9 4.8 32 623-654 142-173 (183)
122 cd02661 Peptidase_C19E A subfa 33.7 30 0.00065 37.2 2.6 17 748-764 244-260 (304)
123 PF03801 Ndc80_HEC: HEC/Ndc80p 33.1 25 0.00054 34.7 1.7 88 624-719 43-137 (157)
124 cd02667 Peptidase_C19K A subfa 33.1 30 0.00065 37.2 2.5 24 748-771 198-223 (279)
125 PRK14603 ruvA Holliday junctio 32.7 75 0.0016 32.6 5.1 25 682-706 152-176 (197)
126 PRK14600 ruvA Holliday junctio 32.1 78 0.0017 32.2 5.1 26 682-707 145-170 (186)
127 PF07223 DUF1421: Protein of u 31.7 40 0.00086 37.7 3.2 25 680-704 319-343 (358)
128 cd02662 Peptidase_C19F A subfa 31.0 32 0.0007 36.1 2.3 24 748-771 159-184 (240)
129 cd02660 Peptidase_C19D A subfa 30.9 35 0.00076 37.3 2.6 17 747-763 268-284 (328)
130 cd02671 Peptidase_C19O A subfa 30.8 33 0.00072 38.1 2.4 24 748-771 268-294 (332)
131 PRK14602 ruvA Holliday junctio 30.6 87 0.0019 32.3 5.3 26 681-706 154-179 (203)
132 cd00729 rubredoxin_SM Rubredox 30.3 32 0.00068 24.8 1.4 13 193-205 2-14 (34)
133 PRK14606 ruvA Holliday junctio 29.8 94 0.002 31.6 5.3 25 682-706 143-167 (188)
134 PF02954 HTH_8: Bacterial regu 29.6 45 0.00098 25.0 2.2 24 694-717 5-28 (42)
135 PF08587 UBA_2: Ubiquitin asso 28.2 11 0.00023 29.2 -1.4 27 622-648 1-28 (46)
136 PF08882 Acetone_carb_G: Aceto 27.8 27 0.00059 32.2 0.8 60 189-255 11-85 (112)
137 cd02665 Peptidase_C19I A subfa 27.7 41 0.00088 35.4 2.3 21 313-333 1-21 (228)
138 COG1308 EGD2 Transcription fac 27.2 71 0.0015 30.0 3.4 38 621-659 82-120 (122)
139 PRK14600 ruvA Holliday junctio 26.8 1.2E+02 0.0026 30.9 5.4 26 623-648 145-170 (186)
140 PF11372 DUF3173: Domain of un 26.6 58 0.0013 26.7 2.4 22 687-708 7-28 (59)
141 PRK14606 ruvA Holliday junctio 26.3 1E+02 0.0023 31.3 4.9 24 624-647 144-167 (188)
142 PRK13901 ruvA Holliday junctio 25.4 74 0.0016 32.7 3.6 25 682-706 144-168 (196)
143 cd02672 Peptidase_C19P A subfa 24.6 52 0.0011 35.4 2.5 17 748-764 209-225 (268)
144 KOG1871 Ubiquitin-specific pro 24.4 25 0.00055 39.2 0.0 125 310-440 177-314 (420)
145 PF14353 CpXC: CpXC protein 24.3 1.2E+02 0.0026 28.5 4.7 18 529-547 32-49 (128)
146 TIGR00274 N-acetylmuramic acid 24.1 1.5E+02 0.0033 32.3 6.0 23 693-715 269-291 (291)
147 cd02659 peptidase_C19C A subfa 24.1 56 0.0012 35.8 2.7 23 748-770 248-272 (334)
148 TIGR00084 ruvA Holliday juncti 23.4 1E+02 0.0022 31.5 4.2 26 623-648 147-172 (191)
149 PRK14602 ruvA Holliday junctio 23.2 1.4E+02 0.0029 30.9 5.1 25 623-647 155-179 (203)
150 KOG0608 Warts/lats-like serine 23.1 53 0.0011 39.3 2.2 58 601-660 69-126 (1034)
151 PRK14605 ruvA Holliday junctio 22.7 1.5E+02 0.0033 30.3 5.3 26 682-707 148-173 (194)
152 PF08274 PhnA_Zn_Ribbon: PhnA 22.6 39 0.00085 23.8 0.7 20 182-201 3-27 (30)
153 PRK14603 ruvA Holliday junctio 22.6 1.5E+02 0.0032 30.5 5.2 25 623-647 152-176 (197)
154 PRK05441 murQ N-acetylmuramic 22.5 2.2E+02 0.0048 31.2 6.9 24 692-715 273-296 (299)
155 COG0632 RuvA Holliday junction 22.1 87 0.0019 32.3 3.4 25 683-707 157-181 (201)
156 PF09855 DUF2082: Nucleic-acid 21.9 74 0.0016 26.5 2.3 35 537-571 1-37 (64)
157 PRK13901 ruvA Holliday junctio 21.9 95 0.002 31.9 3.6 27 623-649 144-170 (196)
158 PRK14605 ruvA Holliday junctio 21.6 1.5E+02 0.0032 30.4 5.0 26 623-648 148-173 (194)
159 PF07223 DUF1421: Protein of u 20.7 87 0.0019 35.1 3.2 24 623-646 321-344 (358)
160 PF08938 HBS1_N: HBS1 N-termin 20.6 61 0.0013 28.0 1.6 27 636-663 45-71 (79)
161 PRK14604 ruvA Holliday junctio 20.4 1.8E+02 0.0038 29.9 5.2 25 623-647 149-173 (195)
No 1
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-173 Score=1423.28 Aligned_cols=709 Identities=46% Similarity=0.826 Sum_probs=646.4
Q ss_pred CchhhhhhhhhCcccCCCCCCcccccccccccccCCCCCCcEEecccccccCcchhhhhhhccCCcEEEEEEEEEecCCC
Q 003533 1 MNPMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLVAP 80 (812)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~v~k~eC~~~fd~~~~~~gl~vcl~~f~~~~~~h~~~h~~~~~~~~~l~i~~~~~~~~~ 80 (812)
|| |+.+..|++.+++|.++++||||||+||||+|++++||||||+||+|||+.|+..|+.+|+|++||||+|++|++++
T Consensus 1 ~~-~~~~~~~~~~~~vp~~~~~i~kdeC~ycf~sp~~e~glyicl~~f~afg~~~v~~~f~~tg~~~yl~i~r~~k~k~~ 79 (763)
T KOG0944|consen 1 ED-MEALHSHMPTVVVPRASQVIYKDECAYCFDSPESEGGLYICLNCFLAFGREHVEEYFRKTGHSVYLHIARVKKIKEE 79 (763)
T ss_pred CC-ccchhhcCCceeecCCCCceehhhceeeccCCCCCCCEEeehhhhhhhhhHHHHHHHhhcCceEEEEeccccchhhc
Confidence 46 78889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C---CCCCCCCceeeeeccCCCCCCccCceeEEEEEEecCCccccCCCCCCc-HHH--HHHHHHHHhhccHHHHHHHHhh
Q 003533 81 E---DRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELP-EKV--RLAVDAILMAEGAERKEQVAAW 154 (812)
Q Consensus 81 ~---~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~~~s~~~~~~~~~w 154 (812)
. .+|+.|+|||+|+++ +.+++.|.||++|+...+.+++..++ +.+ .+.+++++.|.++..++.+.+|
T Consensus 80 ~~~~~~p~~K~tkl~i~~d-------~e~~d~~~iv~~p~~~~~~i~n~~~~~~i~~~~e~i~a~~sa~~~~~k~~~~aW 152 (763)
T KOG0944|consen 80 GAEGAEPKRKITKLEIGED-------LECEDVYDIVVVPDDLEIAIKNIQLLPEIVSATEAIEAMLSAISPSRKDRVNAW 152 (763)
T ss_pred cCcCCCccccceeEEeccc-------cccceeEEEEEeccccccccCCccccHHHHHHHHHHHHHHhhcCcchhhhhhhh
Confidence 4 478899999999986 36888999999998888888775544 445 5678999999999999999999
Q ss_pred hhccCCCCcccccccccCCCccCCCCCCcccccCCCCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeec
Q 003533 155 TADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLG 234 (812)
Q Consensus 155 ~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lg 234 (812)
++|++..|+|..+|.|++++..+++++|+|+.|++++|||+||+||+|||||.||||.||||||+.||++|+||+|||||
T Consensus 153 d~Evr~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLg 232 (763)
T KOG0944|consen 153 DNEVRTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLG 232 (763)
T ss_pred hhheeeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEec
Confidence 99998999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEeccCCCCCCchhHHHHHHhhcccccccchhhhhhhhhhhhcccccccccccccCCcccccCCCccccc
Q 003533 235 TITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGL 314 (812)
Q Consensus 235 tit~~~~~~~vycy~cd~~v~dp~l~~~L~~~gI~~~~~~kteksl~el~ie~n~~~e~~~~~e~g~~l~p~~g~g~~GL 314 (812)
|||++ ++|||||.||++|.||+|++||+|||||+..|.||||++.|+++++|..|+|.+++|+|..++|++|||+|||
T Consensus 233 sIs~d--g~DvycY~cDd~v~dPnl~~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl 310 (763)
T KOG0944|consen 233 SISPD--GADVYCYDCDDEVRDPNLESHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGL 310 (763)
T ss_pred ccCCC--ccceeeecccccccCccHHHHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccce
Confidence 99999 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccC
Q 003533 315 VNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTT 394 (812)
Q Consensus 315 ~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~ 394 (812)
+|||||||||||||+||++|.|..+|+.. .+++.+.+.+|.+||.|||.||+++|.+|+||+|..+.
T Consensus 311 ~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~---~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~---------- 377 (763)
T KOG0944|consen 311 INLGNSCYLNSVMQSLFSIPSFQRRYLEQ---ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDP---------- 377 (763)
T ss_pred eecCcchhHHHHHHHheecccHHHhhccc---cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCc----------
Confidence 99999999999999999999999999875 56788888999999999999999999999999983311
Q ss_pred CCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeeeecc
Q 003533 395 DTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRL 473 (812)
Q Consensus 395 ~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~ 473 (812)
..+.+|+|.+||.+||+.||+|++.+||||+|||++||+.|++...... .+|+++|+|.+++|++| .|++|+|++++
T Consensus 378 -~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-~nptd~frF~ve~Rv~C~~c~kVrYs~~~ 455 (763)
T KOG0944|consen 378 -SNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-PNPTDLFRFEVEDRVSCLGCRKVRYSYES 455 (763)
T ss_pred -cccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-CCHHHHHHhhhhhhhhhhccccccccchh
Confidence 1368999999999999999999999999999999999999999876432 78999999999999999 99999999999
Q ss_pred ceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEE
Q 003533 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAG 553 (812)
Q Consensus 474 ~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~ 553 (812)
.+.|.||||... .++..+++.+||++||.| .+++|+|++||.|..|+|+++
T Consensus 456 ~~~i~lpv~~~~----------------------------~v~~~v~~~~cleaff~p-q~~df~s~ac~~K~~a~kt~~ 506 (763)
T KOG0944|consen 456 EYLIQLPVPMTN----------------------------EVREKVPISACLEAFFEP-QVDDFWSTACGEKKGATKTTR 506 (763)
T ss_pred heeeEeeccccc----------------------------cccccCCHHHHHHHhcCC-cchhhhhHhhcCccccccccc
Confidence 999999998621 134558999999999999 666799999999999999999
Q ss_pred ecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccCCCCCCCccCCCCCCCCcccCCCCcCCHHHHHHHHhC
Q 003533 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSM 633 (812)
Q Consensus 554 i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~g~~~gE~~lpe~~~~~~~~~~~~~~~~~~v~~L~~M 633 (812)
|++||+||+||++||.+. +|+++|+++.|++|+.|||+.|++.|+||||++||++.++. .++.+|+.+|.||++|
T Consensus 507 ~ksfP~yLiiqv~rf~~~-dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~----~~~~~d~s~i~qL~~M 581 (763)
T KOG0944|consen 507 FKSFPDYLIIQVGRFTLQ-DWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPET----SEFAADRSVISQLVEM 581 (763)
T ss_pred cccCCceEEEEeeEEEec-CceeeeeccceecchhhchhhhhhcCCCCcccccCCcCccc----CccchhHHHHHHHHHc
Confidence 999999999999999995 99999999999999999999999999999999999987653 4577999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCCCCCCCCC--cccc---ccCCCCHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 003533 634 GFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL--SQET---QCAAIDQSKVETLLSFGFSEEVARNALKASGG 708 (812)
Q Consensus 634 GF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~~~~~p~--~~~~---~~~~~~~~~i~~L~~mGf~~~~a~~AL~~~~~ 708 (812)
|||+++|+|||++|||+++|+|||||++||+|||+++|+ |+.. .+.+++++.+.++++|||++.+|++||+++||
T Consensus 582 GFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~ 661 (763)
T KOG0944|consen 582 GFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNN 661 (763)
T ss_pred CCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999 4422 23379999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCccccCCCCC----CCCCCCCCCCCCCceeEEEEEeecCCChhhHHH
Q 003533 709 DIEKATDWIFNNPDASTSSDMDAATSSTA----QTPADAGLPDGGGSKFLKHILAYFIPNLYMLSV 770 (812)
Q Consensus 709 ~~e~A~~wl~~~~dd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~y~L~a~I~H~G~s~~~a~~ 770 (812)
|+|||+||+|+|||+.-++ .+...++++ +....++ .||+|+|+|+|||||||+|++-.++
T Consensus 662 nveravDWif~h~d~~~ed-~~~~~s~~~~~~~~~~~~~~-~dg~~~Y~L~a~IsHmGts~~sGHY 725 (763)
T KOG0944|consen 662 NVERAVDWIFSHMDIPVED-AAEGESSSAIESESTPSGTG-KDGPGKYALFAFISHMGTSAHSGHY 725 (763)
T ss_pred cHHHHHHHHHhcccccccc-cCcCCCCCcchhhcCCcccC-CCCCcceeEEEEEecCCCCCCCcce
Confidence 9999999999999953332 211111111 1122233 8999999999999999999886543
No 2
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-130 Score=1041.09 Aligned_cols=685 Identities=25% Similarity=0.385 Sum_probs=578.9
Q ss_pred hhhhC--cccCCCCCCcccccccccccccCCCCCCcEEecccccccCcchhhhhhh-----ccCCcEEEEEEEEEecCCC
Q 003533 8 RSNLS--RVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFE-----KTGNPVYLHIKQTRKLVAP 80 (812)
Q Consensus 8 ~~~~~--~~~~p~~~~~v~k~eC~~~fd~~~~~~gl~vcl~~f~~~~~~h~~~h~~-----~~~~~~~l~i~~~~~~~~~ 80 (812)
++|+. .+.+|....+||||||+|||.|++.++||+|||+|||+||.+|..+|.. +|=|.+|+.|.+.. ||++
T Consensus 3 ~~H~e~ae~vlpn~~av~~reeC~yCf~S~~~e~si~vClnCfqs~C~~h~~~H~~~~~~c~tvh~i~~tia~~~-PKQe 81 (749)
T COG5207 3 FSHSEMAEMVLPNLPAVRFREECCYCFRSIGDEHSISVCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETIADLG-PKQE 81 (749)
T ss_pred CchhhhhhhcCCCCchhhhhhhhheeeccCCCCcceehHHHHhHhhhhhccceeecchhhhhhhhhhhhhhhhcC-chhh
Confidence 45654 7778888889999999999999999999999999999999999888874 67789999999885 5554
Q ss_pred -CCCCCCCCceeeeeccCCCCCCccCceeEEEEEEecCCccccCCCCCCcHHHHHHHHHHHhhccHHHHHHHHhhhhccC
Q 003533 81 -EDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKK 159 (812)
Q Consensus 81 -~~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~w~~~~~ 159 (812)
.++++.|.+||.|... +|+|.|++.|-.+++-+... +..+.+.+.+.++++..|.++...++..+|+.| +
T Consensus 82 ~~eE~~nK~ikl~~~e~----seed~~~~~~VPr~vl~k~t----~s~~s~~~~~kiE~m~~a~k~~~ed~~~~w~~E-~ 152 (749)
T COG5207 82 NVEENNNKKIKLKNAEL----SEEDVEELRRVPRTVLSKST----DSDISSTALEKIERMEIAIKPGDEDERVLWRDE-E 152 (749)
T ss_pred ccccCccceeeeeeecc----chhhhHHhhccchhhccccc----ccccchhhHHHHHHHHHhcCCCchhhhhhhhhh-c
Confidence 3667778889988776 68899998874444433221 124667788999999999999999999999988 5
Q ss_pred CCCcccccccccCCCccCCCCCCcccccCCCCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeecccccC
Q 003533 160 QTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSD 239 (812)
Q Consensus 160 ~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~ 239 (812)
..|+|..++. .+.-..-...+.+|+.|++..|||+||+||++||||.|| |.+|||||+.||++|+||+||||++|+.+
T Consensus 153 ~tC~H~~n~~-~~s~~~~ni~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~Qy-G~~GngHAlsHY~~t~Hplavkl~Sls~~ 230 (749)
T COG5207 153 VTCVHGCNEG-PSSIEMGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQY-GAEGNGHALSHYEETQHPLAVKLPSLSKE 230 (749)
T ss_pred ccccccCCCC-CCcccccccCCceeccccchhceEEEEecCcccccceee-cCCCCcchhhhhhccCCceEEEccccccc
Confidence 9999987763 222111133458999999999999999999999999999 56779999999999999999999999965
Q ss_pred CCCceEEeccCCCCC-Cch--hHHHHHHhhcccccccchhhhhhhhhhhhcccccccccccccCCcccccCCCc-ccccc
Q 003533 240 LEGADVFSYPEDDSV-VDP--LLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPG-YTGLV 315 (812)
Q Consensus 240 ~~~~~vycy~cd~~v-~dp--~l~~~L~~~gI~~~~~~kteksl~el~ie~n~~~e~~~~~e~g~~l~p~~g~g-~~GL~ 315 (812)
.+|+|||.||+++ .++ ++..++..||||+.+..++||++.++++++|.+|+|.+..+++++.. .++|+ ++||+
T Consensus 231 --~~diyCY~CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~lq~eqn~nw~F~~~~~~~~sk~-~~~ps~~~Gli 307 (749)
T COG5207 231 --DCDIYCYLCDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQSEQNANWEFLEKKRAPESKG-ESVPSPYVGLI 307 (749)
T ss_pred --cccEEEEecCcccccCCcccccceeeeeccchhhccchHHHHHHHHHhhhcCcchhccccCchhhc-ccCCCCccceE
Confidence 9999999999996 344 78899999999999999999999999999999999999888777654 45566 89999
Q ss_pred cCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccCC
Q 003533 316 NLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTD 395 (812)
Q Consensus 316 NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~ 395 (812)
|||||||+|||+|.|++...+...+... .+.+.+....|..||.||+.||+.+|.+. | ..
T Consensus 308 NlGNsCYl~SviqSlv~~~v~~~~~d~l---~~~~~~~~~~P~~~l~CQl~kll~~mk~~----p-------------~~ 367 (749)
T COG5207 308 NLGNSCYLSSVIQSLVGYAVSKEEFDLL---QHFEICYMKNPLECLFCQLMKLLSKMKET----P-------------DN 367 (749)
T ss_pred ecCCeeeHHHHHHHHhccccchhhhhhh---ccceeeeecCCchhHHHHHHHHHhhccCC----C-------------Cc
Confidence 9999999999999999988887665432 22344556789999999999999987653 2 23
Q ss_pred CCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeeeeccc
Q 003533 396 TKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRLD 474 (812)
Q Consensus 396 ~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~ 474 (812)
.++.+|+|.+|+.+||+.||+|.+.+||||+|||++||++|++.......+.|.++|.|.++++++| .|+.|+|++++.
T Consensus 368 ~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~ 447 (749)
T COG5207 368 EYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESM 447 (749)
T ss_pred cccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhcCCCcchhhhhhhcceecccccccccccccce
Confidence 6899999999999999999999999999999999999999999888777889999999999999999 999999999999
Q ss_pred eeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEEe
Q 003533 475 YILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGL 554 (812)
Q Consensus 475 ~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i 554 (812)
..+.+++... +. .+++..|+++||.+++++ |.|++|+.+..|+|+..|
T Consensus 448 ~~i~i~le~n------------------------------~E-~~di~~~v~a~f~pdtiE-~~CenCk~K~~a~~k~~~ 495 (749)
T COG5207 448 LMICIFLEGN------------------------------DE-PQDIRKSVEAFFLPDTIE-WSCENCKGKKKASRKPFI 495 (749)
T ss_pred EEEEeecccC------------------------------cc-hhhHHHHHHheECcccee-eehhhhcCcccccccchh
Confidence 8887766321 11 268999999999999999 999999999999999999
Q ss_pred cccCCceEEEeeeEEEcCCcceeccceeeecCC--cccccccccCCCCCCCccCCCCCCCCcccCCCCcCCHHHHHHHHh
Q 003533 555 TSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPD--IIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVS 632 (812)
Q Consensus 555 ~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~--~LDLs~y~~~g~~~gE~~lpe~~~~~~~~~~~~~~~~~~v~~L~~ 632 (812)
++||+|||+|..||.+. +|..+|+..++.+-. .+++++|+++..-..|.+|||+.+. ++.|..+|.||++
T Consensus 496 kslPk~LIlq~~R~~lq-ny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~-------~t~Nqs~I~qL~~ 567 (749)
T COG5207 496 KSLPKYLILQVGRYSLQ-NYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEA-------FTDNQSLIRQLVD 567 (749)
T ss_pred hccCceeEEecceeecc-ceeehhccCceEEccccccchhhHhhccCCcccccCCccccc-------cCchHHHHHHHHH
Confidence 99999999999999998 899999999998875 5999999999444499999987543 7789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCCCCCCCCC-cc---ccccCCCCHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 003533 633 MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL-SQ---ETQCAAIDQSKVETLLSFGFSEEVARNALKASGG 708 (812)
Q Consensus 633 MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~~~~~p~-~~---~~~~~~~~~~~i~~L~~mGf~~~~a~~AL~~~~~ 708 (812)
||||+++|.|||.+|||+|+|.||||||+||+|||+++|+ |. +....++++..+..|.+|||+..+||+||...+|
T Consensus 568 mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~ 647 (749)
T COG5207 568 MGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNT 647 (749)
T ss_pred cCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999 22 3345689999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCceeEEEEEeecCCChhhHHH
Q 003533 709 DIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNLYMLSV 770 (812)
Q Consensus 709 ~~e~A~~wl~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~a~I~H~G~s~~~a~~ 770 (812)
|++|||+|+|+|+|. ..+.|.-+.+..+.....+.+. .-.|.|.|||||+|.|+|..++
T Consensus 648 d~~r~V~w~~N~~D~--tF~EP~v~~eeqqqk~~~~~ST-a~PYaLtAvI~HkG~s~haGHY 706 (749)
T COG5207 648 DSKRRVVWCINDDDG--TFPEPEVPNEEQQQKKDLGYST-AKPYALTAVICHKGDSIHAGHY 706 (749)
T ss_pred CchheEEEEEeCCCC--CCCCCCCCchhhhhcccccccc-cCcccceeEEeccCCcccccce
Confidence 999999999996554 2222221111111122222222 2349999999999999886543
No 3
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-57 Score=516.29 Aligned_cols=341 Identities=18% Similarity=0.300 Sum_probs=275.3
Q ss_pred ccCCCCC-CcccccCCCCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeecccccCCCCceEEeccCCCC
Q 003533 175 VIIPPSG-WKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDS 253 (812)
Q Consensus 175 ~~~~~~~-~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~~ 253 (812)
..++.+. ..|+.|.++.|+|+||+||.++||| |+++||+.|+.+++|+++|+++ +++||||.||++
T Consensus 9 ~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~------~~~~ha~~H~~~~~H~~~v~l~-------t~~~yc~~~~~~ 75 (440)
T cd02669 9 SVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGR------GKGSHAYTHSLEDNHHVFLNLE-------TLKFYCLPDNYE 75 (440)
T ss_pred hhccccccccccccCCCCcEEEEcccCCeecCC------CCCcHHHHHhhccCCCEEEECC-------CCCEEEeCCCCE
Confidence 3466665 5699999999999999999777755 3789999999999999999996 799999999999
Q ss_pred CCchhHHHHHHhhcccccccchhhhhhhhhhhhcccccccccccccCCcccccCCCcccccccCCCcchhhHHHHHhhcC
Q 003533 254 VVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFST 333 (812)
Q Consensus 254 v~dp~l~~~L~~~gI~~~~~~kteksl~el~ie~n~~~e~~~~~e~g~~l~p~~g~g~~GL~NLGNTCYmNSVLQ~L~~i 333 (812)
|.|+.|.+++ +++++ .+|++.+.++ +.+.+|. . ..+| +.++||++||.|+|||||||||||+|+++
T Consensus 76 v~d~~l~~i~--~~~~~---~~~~~~i~~~--~~~~~~~--~-~~~~----~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~ 141 (440)
T cd02669 76 IIDSSLDDIK--YVLNP---TYTKEQISDL--DRDPKLS--R-DLDG----KPYLPGFVGLNNIKNNDYANVIIQALSHV 141 (440)
T ss_pred EeCccHHHHH--HHhcC---CCCHHHHHHh--hhccccc--c-ccCC----CCccCCccCccCCCCchHHHHHHHHHHCC
Confidence 9999999987 45554 4777777654 5555541 1 2233 35789999999999999999999999999
Q ss_pred hhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccCCCCCCCCCchhHHHHHHhh
Q 003533 334 HAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAAS 413 (812)
Q Consensus 334 p~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~IsP~~f~~~i~~~ 413 (812)
|+||++|+...+... ......++.++|..++..+|+++ ..+..|+|..|+..++..
T Consensus 142 p~lr~~~l~~~~~~~-----~~~~~~~l~~~l~~l~~kl~~~~-------------------~~~~~isP~~fl~~l~~~ 197 (440)
T cd02669 142 KPIRNFFLLYENYEN-----IKDRKSELVKRLSELIRKIWNPR-------------------NFKGHVSPHELLQAVSKV 197 (440)
T ss_pred HHHHHHHhhcccccc-----ccCCCcHHHHHHHHHHHHHhccc-------------------cCCCccCHHHHHHHHHhh
Confidence 999999986432110 11244579999999999998752 245689999999999875
Q ss_pred -CCCCCcccccchHHHHHHHHHHHHHHhcC---CCCCCCccceeeEEEEEEEe-CCC---------------Ceeeeecc
Q 003533 414 -HPEFSSMRQQDALEFFLHFVDQVERVHSG---KPEVDPTKSFKFGIEERISC-PSG---------------KVAYNRRL 473 (812)
Q Consensus 414 -~~~F~~~~QQDA~EFL~~LLd~L~~~~~~---~~~~~i~~~F~g~l~~~i~C-~C~---------------~vs~~~e~ 473 (812)
++.|++++||||+|||++|||.|+++... ...+.++++|+|++++.++| .|. .++.+.++
T Consensus 198 ~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~p 277 (440)
T cd02669 198 SKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSP 277 (440)
T ss_pred cccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeecc
Confidence 46799999999999999999999998864 23568899999999999998 765 35677899
Q ss_pred ceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEE
Q 003533 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAG 553 (812)
Q Consensus 474 ~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~ 553 (812)
|++|+|+||....... + ..+...|.++|++||+.| .|+.|.....++|+.+
T Consensus 278 F~~LsLdip~~~~~~~----------------~----~~~~~l~~~~l~e~L~ky---------~~~~c~~~~~a~k~~~ 328 (440)
T cd02669 278 FLLLTLDLPPPPLFKD----------------G----NEENIIPQVPLKQLLKKY---------DGKTETELKDSLKRYL 328 (440)
T ss_pred ceEEEecCCCCccccc----------------c----ccccccCcccHHHHHHhc---------CCccceecccceEEEE
Confidence 9999999987532110 0 011223568999999765 4666777888999999
Q ss_pred ecccCCceEEEeeeEEEcCCcceeccceeeecCCc-cccccccc
Q 003533 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDI-IDISHMRS 596 (812)
Q Consensus 554 i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~-LDLs~y~~ 596 (812)
|.++|+||+||||||.++ .+..+|+++.|.||.. |||++|+.
T Consensus 329 I~~LP~vLiihLKRF~~~-~~~~~K~~t~V~FP~~~LDm~~y~~ 371 (440)
T cd02669 329 ISRLPKYLIFHIKRFSKN-NFFKEKNPTIVNFPIKNLDLSDYVH 371 (440)
T ss_pred EeeCCcEEEEEEecccCC-CCccccCCCEEECCCCccchhhhhC
Confidence 999999999999999998 4667899999999997 89999986
No 4
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-42 Score=378.64 Aligned_cols=251 Identities=51% Similarity=0.832 Sum_probs=209.9
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||.|+|||||||||||+|+++|+||++++...+ ........|..++.++|.+|+.+|++++|+.+.....
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~---~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~------- 70 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLEN---KFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKS------- 70 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcc---ccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccc-------
Confidence 899999999999999999999999999976221 1222344677899999999999999998886532110
Q ss_pred cCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeeee
Q 003533 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471 (812)
Q Consensus 393 ~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~ 471 (812)
.....+.+|+|..|+.++++.+|.|.+++||||+|||++||+.|+++........+.++|+|.++++++| .|++++++.
T Consensus 71 ~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~f~~~~~~~i~C~~C~~~s~~~ 150 (311)
T cd02658 71 ENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLGLNPNDLFKFMIEDRLECLSCKKVKYTS 150 (311)
T ss_pred cccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccccCCchhheEEEeeEEEEcCCCCCEEEee
Confidence 1123577899999999999999999999999999999999999999986555567889999999999999 999999999
Q ss_pred ccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEE
Q 003533 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKS 551 (812)
Q Consensus 472 e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~ 551 (812)
+++.+|+|+||........ ......+..+|++||+.|+.+|.++ ++|+.|++++.|.|+
T Consensus 151 e~~~~lsL~l~~~~~~~~~--------------------~~~~~~~~~sl~~~L~~~~~~e~i~-~~C~~C~~~~~a~k~ 209 (311)
T cd02658 151 ELSEILSLPVPKDEATEKE--------------------EGELVYEPVPLEDCLKAYFAPETIE-DFCSTCKEKTTATKT 209 (311)
T ss_pred cceeEEeeecccccccccc--------------------cccccCCCCCHHHHHHHHcCccccc-ccccCCCCcccEEEE
Confidence 9999999999875421100 0011234579999999999999999 688899999999999
Q ss_pred EEecccCCceEEEeeeEEEcCCcceeccceeeecCCccccccc
Q 003533 552 AGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHM 594 (812)
Q Consensus 552 ~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y 594 (812)
.+|.++|+||+|||+||.++.+|.+.|++..|.||..|.-..|
T Consensus 210 ~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~Y 252 (311)
T cd02658 210 TGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY 252 (311)
T ss_pred EEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCcE
Confidence 9999999999999999999778999999999999987733333
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-41 Score=369.75 Aligned_cols=244 Identities=20% Similarity=0.358 Sum_probs=205.5
Q ss_pred cccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhccc
Q 003533 312 TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAA 391 (812)
Q Consensus 312 ~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~ 391 (812)
+||.|+|||||||||||+|+++|+|+++++...+.. ......+..++.++|.+|+..|+..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~---~~~~~~~~~~~~~~l~~l~~~l~~~---------------- 61 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSC---TCLSCSPNSCLSCAMDEIFQEFYYS---------------- 61 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccc---ccccCCccccHHHHHHHHHHHHhcC----------------
Confidence 599999999999999999999999999998753211 0122346678999999999999532
Q ss_pred ccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC---------CCCCccceeeEEEEEEEe
Q 003533 392 TTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP---------EVDPTKSFKFGIEERISC 462 (812)
Q Consensus 392 ~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~---------~~~i~~~F~g~l~~~i~C 462 (812)
.....++|..|+..+++..+.|.++.||||+|||.+|||.|+++..... .+.+.++|+|.++++++|
T Consensus 62 ----~~~~~~~~~~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 62 ----GDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred ----CCCCCcCHHHHHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEc
Confidence 1345789999999999999999999999999999999999999875432 246789999999999999
Q ss_pred -CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc--ccc
Q 003533 463 -PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYS 539 (812)
Q Consensus 463 -~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~--y~C 539 (812)
.|++++.+.++|+.|+|+||....... . .......+..+|++||+.|+.+|.+++ |+|
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~----------------~---~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C 198 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW----------------A---LGESGVSGTPTLSDCLDRFTRPEKLGDFAYKC 198 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------c---ccccCCCCCCCHHHHHHHhcCccccCCCCccC
Confidence 999999999999999999987542110 0 000112345799999999999999986 589
Q ss_pred cccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccC
Q 003533 540 TALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 540 ~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
++|++++.+.|+..|.++|+||+|||+||.++..|...|+..+|.||.+|||++|+..
T Consensus 199 ~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~ 256 (328)
T cd02660 199 SGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSS 256 (328)
T ss_pred CCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhccc
Confidence 9999999999999999999999999999999866888999999999999999999875
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-39 Score=357.95 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=186.8
Q ss_pred cccCCCcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHH---HHHhcCCCCCC
Q 003533 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA---HGLLSGKYSVP 380 (812)
Q Consensus 304 ~p~~g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~---~~l~sg~ys~~ 380 (812)
++.+.++++||.|+|||||||||||+|+++|+|++.++... . ......+++.++ ..++..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~------~------~~~~~~~~q~~~~~l~~~~~~----- 79 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV------S------LISSVEQLQSSFLLNPEKYND----- 79 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh------c------ccCcHHHHHHHHHHHHHHHhh-----
Confidence 45567899999999999999999999999999999886421 0 001122333333 233321
Q ss_pred hhhhhhhhcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEE
Q 003533 381 AQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERI 460 (812)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i 460 (812)
....++|..|+..+++.+|.|.++.||||+|||++|||.|+. .+.++|+|.+++++
T Consensus 80 ----------------~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------~i~~~F~g~~~~~~ 135 (332)
T cd02671 80 ----------------ELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------LVEKDFQGQLVLRT 135 (332)
T ss_pred ----------------cccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH--------HHHhhhceEEEEEE
Confidence 122457999999999999999999999999999999999985 45689999999999
Q ss_pred Ee-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---
Q 003533 461 SC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--- 536 (812)
Q Consensus 461 ~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~--- 536 (812)
+| .|++++++.++|++|+||||.....+.++ .. ..+ .....+..+|++||+.|+++|.++|
T Consensus 136 ~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~------------~~--~~~-~~~~~~~~tL~~~L~~f~~~E~l~g~n~ 200 (332)
T cd02671 136 RCLECETFTERREDFQDISVPVQESELSKSEE------------SS--EIS-PDPKTEMKTLKWAISQFASVERIVGEDK 200 (332)
T ss_pred EeCCCCCeeceecccEEEEEEeCCCccccccc------------cc--ccc-cccccccCCHHHHHHHhCCcceecCCCC
Confidence 99 99999999999999999998754322100 00 000 0011234699999999999999964
Q ss_pred ccccccCccccceEEEEecccCCceEEEeeeEEEcCCc-----ceeccceeeecCCccccccccc
Q 003533 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGW-----VPKKLDVYIDVPDIIDISHMRS 596 (812)
Q Consensus 537 y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~-----~~~Ki~~~V~fP~~LDLs~y~~ 596 (812)
|+|++|++++.|+|+..|.++|+||+||||||.++..| ...|++.+|.||..|||.+|..
T Consensus 201 y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~ 265 (332)
T cd02671 201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWST 265 (332)
T ss_pred eeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccC
Confidence 99999999999999999999999999999999986432 3579999999999999987653
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.6e-40 Score=356.47 Aligned_cols=204 Identities=22% Similarity=0.354 Sum_probs=182.6
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||.|+|||||||||||+|++ .++.++|+.|+..|+...
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------~~l~~~L~~lf~~l~~~~---------------- 38 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------ENLLTCLKDLFESISEQK---------------- 38 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------HHHHHHHHHHHHHHHhCC----------------
Confidence 89999999999999999987 357788999999998752
Q ss_pred cCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCC------------------CCCCCccceee
Q 003533 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK------------------PEVDPTKSFKF 454 (812)
Q Consensus 393 ~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~------------------~~~~i~~~F~g 454 (812)
.....|+|..|+..+++.+|.|.+++||||||||++|||.|+++++.. ..+.+.++|+|
T Consensus 39 ---~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G 115 (300)
T cd02663 39 ---KRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQG 115 (300)
T ss_pred ---CCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCce
Confidence 134579999999999999999999999999999999999999987521 13567899999
Q ss_pred EEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcc
Q 003533 455 GIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEE 533 (812)
Q Consensus 455 ~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ 533 (812)
++.++++| .|++++.+.++|++|+|+||.. .+|++||+.|+++|.
T Consensus 116 ~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~~----------------------------------~sl~~~L~~~~~~E~ 161 (300)
T cd02663 116 ILTNETRCLTCETVSSRDETFLDLSIDVEQN----------------------------------TSITSCLRQFSATET 161 (300)
T ss_pred EEEeeEEeCCCCCCccccceeEEeccCCCCc----------------------------------CCHHHHHHHhhcccc
Confidence 99999999 9999999999999999999741 589999999999999
Q ss_pred cCc---ccccccCccccceEEEEecccCCceEEEeeeEEEcCCc-ceeccceeeecCCcccccccc
Q 003533 534 LPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGW-VPKKLDVYIDVPDIIDISHMR 595 (812)
Q Consensus 534 l~~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~-~~~Ki~~~V~fP~~LDLs~y~ 595 (812)
+++ |+|++|++++.|+|+..|.++|+||+||||||.++..+ ...|++.+|.||..|||.++.
T Consensus 162 l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~ 227 (300)
T cd02663 162 LCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTT 227 (300)
T ss_pred cCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccc
Confidence 975 99999999999999999999999999999999998554 467999999999999998774
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-39 Score=357.70 Aligned_cols=225 Identities=25% Similarity=0.361 Sum_probs=191.9
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhh-cc---CCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAF-EA---APADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~-~~---~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
||.|+|||||||||||+|+++|+|+++++......... .+ .......++.++|.+|+..|+++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~------------- 67 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG------------- 67 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC-------------
Confidence 89999999999999999999999999998643211100 00 00012357999999999999976
Q ss_pred cccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCC----CCCCCccceeeEEEEEEEe-C
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK----PEVDPTKSFKFGIEERISC-P 463 (812)
Q Consensus 389 ~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~----~~~~i~~~F~g~l~~~i~C-~ 463 (812)
....++|..|...++ |..++||||+|||.+|||.|+++.... ....+.++|.|.++++++| .
T Consensus 68 --------~~~~i~p~~f~~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~ 134 (324)
T cd02668 68 --------NRSVVDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSK 134 (324)
T ss_pred --------CCceEChHHHHHHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCC
Confidence 245789999988873 678899999999999999999987532 2357889999999999999 9
Q ss_pred CCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---cccc
Q 003533 464 SGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYST 540 (812)
Q Consensus 464 C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~ 540 (812)
|+.++.+.++|+.|+|+||.. .+|++||+.|+.+|.++| |.|+
T Consensus 135 C~~~s~~~e~f~~l~l~i~~~----------------------------------~sl~~~L~~~~~~e~l~g~~~~~C~ 180 (324)
T cd02668 135 CGRESSLPSKFYELELQLKGH----------------------------------KTLEECIDEFLKEEQLTGDNQYFCE 180 (324)
T ss_pred CCCccccccccEEEEEEeccc----------------------------------CCHHHHHHHhhCceecCCCccccCC
Confidence 999999999999999999631 489999999999999976 8999
Q ss_pred ccCccccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCcccccccccC
Q 003533 541 ALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 541 ~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
+|++++.|.|+..|.++|+||+|||+||.++.. +...|++.+|.||+.|||++|+..
T Consensus 181 ~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~ 238 (324)
T cd02668 181 SCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAE 238 (324)
T ss_pred CCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhccc
Confidence 999999999999999999999999999999854 567899999999999999999854
No 9
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=363.56 Aligned_cols=225 Identities=22% Similarity=0.298 Sum_probs=198.6
Q ss_pred cccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhc
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~ 389 (812)
...||.|+|||||+|||||||.++||+.+|++...|.. .......|++|.|++.+...+..
T Consensus 107 ~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~-----~C~~~~~C~lc~~q~hi~~A~~~-------------- 167 (545)
T KOG1865|consen 107 VGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSR-----SCHRAKFCMLCTFQAHITRALHN-------------- 167 (545)
T ss_pred CCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhh-----hccccCeeeehHHHHHHHHHhcC--------------
Confidence 35799999999999999999999999999999755322 22256789999999988766543
Q ss_pred ccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCC---------CCCCCccceeeEEEEEE
Q 003533 390 AATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK---------PEVDPTKSFKFGIEERI 460 (812)
Q Consensus 390 ~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~---------~~~~i~~~F~g~l~~~i 460 (812)
...+|+|..|+.-+......|..++|.||||||++++|.|+...-.. ..+.++++|+|.|+++|
T Consensus 168 -------~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 168 -------PGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred -------CCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhce
Confidence 34589999999999999999999999999999999999999987321 12678999999999999
Q ss_pred Ee-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---
Q 003533 461 SC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--- 536 (812)
Q Consensus 461 ~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~--- 536 (812)
+| .|++++.++|+..+|+|.|- +. .+|++||+.|+++|.++|
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~-d~---------------------------------~sl~~AL~qFt~~E~L~gen~ 286 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQ-DA---------------------------------SSLQQALEQFTKPEKLDGENA 286 (545)
T ss_pred ecccCCCcccccccccceEEEec-cc---------------------------------hhHHHHHHHhhhHHhhCCccc
Confidence 99 99999999999999999994 11 489999999999999976
Q ss_pred ccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccC
Q 003533 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 537 y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
|+|++|++++.|.|++.|.+.|+||+||||||+. ....||+.+|.||+.|||.||++.
T Consensus 287 Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~I~fPE~LDl~PyMS~ 344 (545)
T KOG1865|consen 287 YHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKPVSFPETLDLQPYMSQ 344 (545)
T ss_pred cccchhhhhCcccceeeeecCCceEEEeeehhcc---CcccccccccCCcccccccccccC
Confidence 9999999999999999999999999999999996 345799999999999999999993
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.4e-39 Score=348.06 Aligned_cols=225 Identities=22% Similarity=0.328 Sum_probs=192.7
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||.|+|||||||||||+|+++|+|+++++....... .......++.++|++|+..|+.+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~~l~~~----------------- 59 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR----GANQSSDNLTNALRDLFDTMDKK----------------- 59 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc----ccccchhHHHHHHHHHHHHHHhC-----------------
Confidence 899999999999999999999999999986432110 12234568999999999999764
Q ss_pred cCCCCCCCCCchhHHHHHHhhCCCCCc------ccccchHHHHHHHHHHHHHHhcC--CCCCCCccceeeEEEEEEEe-C
Q 003533 393 TTDTKQEGIPPRMFKAVIAASHPEFSS------MRQQDALEFFLHFVDQVERVHSG--KPEVDPTKSFKFGIEERISC-P 463 (812)
Q Consensus 393 ~~~~~~~~IsP~~f~~~i~~~~~~F~~------~~QQDA~EFL~~LLd~L~~~~~~--~~~~~i~~~F~g~l~~~i~C-~ 463 (812)
+..++|..|+..+++..+.|+. ++||||+|||.+|||.|+++... .....+.++|+|+++++++| .
T Consensus 60 -----~~~i~p~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 60 -----QEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred -----CCcCCcHHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCC
Confidence 2379999999999999999954 49999999999999999998763 23467899999999999999 9
Q ss_pred CC-CeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCccccccc
Q 003533 464 SG-KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTAL 542 (812)
Q Consensus 464 C~-~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C 542 (812)
|+ .++++.++|++|+|+||... ...+|++||+.++.++.. ..|+.|
T Consensus 135 C~~~~~~~~e~f~~Lsl~i~~~~-------------------------------~~~~l~~~L~~~~~~~~~--~~~~~~ 181 (305)
T cd02657 135 SPDEEEVSTESEYKLQCHISITT-------------------------------EVNYLQDGLKKGLEEEIE--KHSPTL 181 (305)
T ss_pred CCCCCccccccceEEEeecCCCc-------------------------------ccccHHHHHHHhhhhhhh--hcCccc
Confidence 99 89999999999999997632 124899999999987654 479999
Q ss_pred CccccceEEEEecccCCceEEEeeeEEEcCCc-ceeccceeeecCCccccccccc
Q 003533 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGW-VPKKLDVYIDVPDIIDISHMRS 596 (812)
Q Consensus 543 ~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~-~~~Ki~~~V~fP~~LDLs~y~~ 596 (812)
++...++|+.+|.++|+||+||||||.++..+ ...|++.+|.||++|||++|+.
T Consensus 182 ~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~ 236 (305)
T cd02657 182 GRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT 236 (305)
T ss_pred CCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC
Confidence 99999999999999999999999999998543 4569999999999999999986
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.3e-39 Score=346.45 Aligned_cols=185 Identities=25% Similarity=0.390 Sum_probs=168.5
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||.|+|||||||||||+|+++|+|+++++.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------------------- 30 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------------------
Confidence 899999999999999999999999999873
Q ss_pred cCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeeee
Q 003533 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471 (812)
Q Consensus 393 ~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~ 471 (812)
+|..|+..+++.+|+|.+++||||+|||++|||.|+ +.+.++|+|.++++++| .|++++.+.
T Consensus 31 ---------~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~lld~l~--------~~i~~~F~G~~~~~i~C~~C~~~s~~~ 93 (279)
T cd02667 31 ---------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR--------TFIDSIFGGELTSTIMCESCGTVSLVY 93 (279)
T ss_pred ---------CHHHHHHHHHHhhHhhcCCchhhHHHHHHHHHHHHH--------HhhhhhcceEEEEEEEcCCCCCEeCcc
Confidence 166778888888899999999999999999999999 36778999999999999 999999999
Q ss_pred ccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---ccccccCccccc
Q 003533 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTA 548 (812)
Q Consensus 472 e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~a 548 (812)
++|+.|+||++... ....+|++||+.|+.+|.++| |.|+.|++ |
T Consensus 94 E~f~~L~Lp~~~~~------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a 140 (279)
T cd02667 94 EPFLDLSLPRSDEI------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---A 140 (279)
T ss_pred ccceEEecCCCccc------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---e
Confidence 99999999876421 123799999999999999986 89999987 8
Q ss_pred eEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccC
Q 003533 549 TKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 549 ~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
+|+.+|.++|+||+||||||.++.+|...|++.+|.||+.|||++|+..
T Consensus 141 ~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 189 (279)
T cd02667 141 KKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDP 189 (279)
T ss_pred eeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCc
Confidence 9999999999999999999999977788999999999999999999865
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-38 Score=343.61 Aligned_cols=209 Identities=22% Similarity=0.377 Sum_probs=178.0
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||.|+||||||||+||+|+++|+||++++..... .......+.++|..++..|...
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~-------~~~~~~~~~~~L~~lf~~l~~~----------------- 56 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLP-------RLGDSQSVMKKLQLLQAHLMHT----------------- 56 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcc-------ccCCcchHHHHHHHHHHHHhhc-----------------
Confidence 8999999999999999999999999999864321 0123345778898888776543
Q ss_pred cCCCCCCCCCchh-HHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeee
Q 003533 393 TTDTKQEGIPPRM-FKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYN 470 (812)
Q Consensus 393 ~~~~~~~~IsP~~-f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~ 470 (812)
....+.|.. |+...+ .+.|..++||||||||++||+.|+ ..+.++|+|++.++++| .|+.++++
T Consensus 57 ----~~~~~~~~~~~l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~--------~~i~~~F~G~~~~~i~C~~C~~~s~~ 122 (327)
T cd02664 57 ----QRRAEAPPDYFLEASR--PPWFTPGSQQDCSEYLRYLLDRLH--------TLIEKMFGGKLSTTIRCLNCNSTSAR 122 (327)
T ss_pred ----CCcccCCHHHHHHHhc--ccccCCCCcCCHHHHHHHHHHHHH--------HHHHhhCcEEeEeEEEcCCCCCEecc
Confidence 123455554 554433 578999999999999999999999 25778999999999999 99999999
Q ss_pred eccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---ccccccCcccc
Q 003533 471 RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTT 547 (812)
Q Consensus 471 ~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~ 547 (812)
.++|.+|+|+|| +|++||+.|+.+|.++| |+|++|++++.
T Consensus 123 ~e~f~~l~L~i~-------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~ 165 (327)
T cd02664 123 TERFRDLDLSFP-------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQD 165 (327)
T ss_pred cccceeeecCCC-------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccc
Confidence 999999999884 57899999999999986 99999999999
Q ss_pred ceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCccccccccc
Q 003533 548 ATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRS 596 (812)
Q Consensus 548 a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~ 596 (812)
|.|+.+|.++|+||+||||||.++.. +...|++.+|.||+.|||..|..
T Consensus 166 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~ 215 (327)
T cd02664 166 AEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVE 215 (327)
T ss_pred eeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccc
Confidence 99999999999999999999999854 45679999999999999988763
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-37 Score=337.62 Aligned_cols=224 Identities=24% Similarity=0.351 Sum_probs=195.6
Q ss_pred ccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcc
Q 003533 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANA 390 (812)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~ 390 (812)
++||.|+|||||||||||+|+++|+|+++++...+.. ....+..++.++|.+++..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~--------------- 60 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-----DCCNEGFCMMCALEAHVERALAS--------------- 60 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-----hccCCcchHHHHHHHHHHHHHhC---------------
Confidence 5899999999999999999999999999998643211 11234568999999999888754
Q ss_pred cccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCC------------CCCCCccceeeEEEE
Q 003533 391 ATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK------------PEVDPTKSFKFGIEE 458 (812)
Q Consensus 391 ~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~------------~~~~i~~~F~g~l~~ 458 (812)
....+.|..|...++...+.|+.+.||||+|||++|||.|+++.... ..+.+.++|+|.+.+
T Consensus 61 ------~~~~~~p~~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~ 134 (304)
T cd02661 61 ------SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRS 134 (304)
T ss_pred ------CCCccChHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEee
Confidence 24578899999999999999999999999999999999999875321 135678899999999
Q ss_pred EEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc-
Q 003533 459 RISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD- 536 (812)
Q Consensus 459 ~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~- 536 (812)
+++| .|+.++.+.+.++.|+|+||.. .+|+++|+.|+.+|.+++
T Consensus 135 ~~~C~~C~~~s~~~e~~~~l~l~i~~~----------------------------------~~l~~~l~~~~~~e~~~~~ 180 (304)
T cd02661 135 QVKCLNCKHVSNTYDPFLDLSLDIKGA----------------------------------DSLEDALEQFTKPEQLDGE 180 (304)
T ss_pred eEEeCCCCCCcCccccceeeeeecCCC----------------------------------CcHHHHHHHhcCceeeCCC
Confidence 9999 9999999999999999999742 389999999999999886
Q ss_pred --ccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccC
Q 003533 537 --FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 537 --y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
|.|+.|++++.+.|+.+|.++|++|+|||+||.++ ...|+...|.||++|||.+|+..
T Consensus 181 ~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~---~~~Ki~~~v~f~~~L~l~~~~~~ 240 (304)
T cd02661 181 NKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF---RGGKINKQISFPETLDLSPYMSQ 240 (304)
T ss_pred CCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC---CccccCCeEecCCeechhhcccc
Confidence 89999999999999999999999999999999976 46799999999999999999875
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-37 Score=337.47 Aligned_cols=230 Identities=21% Similarity=0.323 Sum_probs=192.3
Q ss_pred cccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhc
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~ 389 (812)
|++||.|+|||||||||||+|+++|+|+++++.... .....+..++.++|.+|+..|..+.+
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~------~~~~~~~~~~~~~l~~lf~~~~~~~~------------ 62 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPP------TEDDDDNKSVPLALQRLFLFLQLSES------------ 62 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCC------cccCcccccHHHHHHHHHHHHHhCCc------------
Confidence 789999999999999999999999999999986420 11224567899999999999987632
Q ss_pred ccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCC-CCCCCccceeeEEEEEEEe-CCCCe
Q 003533 390 AATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK-PEVDPTKSFKFGIEERISC-PSGKV 467 (812)
Q Consensus 390 ~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~-~~~~i~~~F~g~l~~~i~C-~C~~v 467 (812)
..+.|..+..+.......|..++||||+|||.+||+.|+++.... ....+.++|+|.+++.++| .|+..
T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~ 133 (334)
T cd02659 63 ---------PVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHE 133 (334)
T ss_pred ---------cccCcchhheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCce
Confidence 123333333222233567889999999999999999999988632 2357889999999999999 99999
Q ss_pred eeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---ccccccCc
Q 003533 468 AYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKA 544 (812)
Q Consensus 468 s~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~ 544 (812)
+.+.++|+.|+|++|.. .+|++||+.|+.+|.+++ |.|++|++
T Consensus 134 s~~~e~f~~l~l~i~~~----------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~ 179 (334)
T cd02659 134 SEREEYFLDLQVAVKGK----------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGK 179 (334)
T ss_pred ecccccceEEEEEcCCC----------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCC
Confidence 99999999999999641 489999999999999886 99999999
Q ss_pred cccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCcccccccccCCCC
Q 003533 545 KTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQ 600 (812)
Q Consensus 545 ~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~g~~ 600 (812)
++.+.|+.+|.++|+||+|||+||.++.. +...|++.+|.||..|||++|+..+..
T Consensus 180 ~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~ 236 (334)
T cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLA 236 (334)
T ss_pred cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccc
Confidence 99999999999999999999999998633 456799999999999999999977543
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=341.78 Aligned_cols=267 Identities=25% Similarity=0.384 Sum_probs=215.7
Q ss_pred CcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
.|.+||.||||||||||.||||.|++.+|+||+...+...+...++..-...+...++.|+..++++
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~------------- 329 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG------------- 329 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc-------------
Confidence 3889999999999999999999999999999999888777777666666777888888888888765
Q ss_pred cccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC------------------------
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP------------------------ 444 (812)
Q Consensus 389 ~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~------------------------ 444 (812)
.-..++|.+||..||..+.+|+|+.|||++||+.+|||.||+.+++..
T Consensus 330 --------~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~e 401 (823)
T COG5560 330 --------NLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKE 401 (823)
T ss_pred --------cccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHH
Confidence 456899999999999999999999999999999999999999886311
Q ss_pred ---------CCCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccH------------------------H
Q 003533 445 ---------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNK------------------------E 490 (812)
Q Consensus 445 ---------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~------------------------~ 490 (812)
.+.|.++|.|..+++++| .|+.++.+++||.+|+||+|....... .
T Consensus 402 cW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~ 481 (823)
T COG5560 402 CWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIR 481 (823)
T ss_pred HHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHH
Confidence 168999999999999999 999999999999999999998643110 0
Q ss_pred HHHH-----------------------------------------------H--------------------HHHH----
Q 003533 491 ELAA-----------------------------------------------F--------------------QKLK---- 499 (812)
Q Consensus 491 ~~~~-----------------------------------------------~--------------------~~~~---- 499 (812)
.++. | +.+.
T Consensus 482 ~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~ 561 (823)
T COG5560 482 GLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGD 561 (823)
T ss_pred HHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCC
Confidence 0000 0 0000
Q ss_pred -----------------------------Hhh--------------h-----------------------ccCCCCCc--
Q 003533 500 -----------------------------MER--------------I-----------------------SEGKDVTN-- 511 (812)
Q Consensus 500 -----------------------------~~~--------------~-----------------------~~g~~~~~-- 511 (812)
.+. . .+|+...+
T Consensus 562 pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~ 641 (823)
T COG5560 562 PFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDA 641 (823)
T ss_pred cceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcc
Confidence 000 0 00000000
Q ss_pred ------------------------cc--ccCCCCCHHHHHHhhcCCcccC---cccccccCccccceEEEEecccCCceE
Q 003533 512 ------------------------EE--IVRPRVPLEACLSTFSAPEELP---DFYSTALKAKTTATKSAGLTSFPDYLV 562 (812)
Q Consensus 512 ------------------------~~--~~~~~~sL~dcL~~f~~~E~l~---~y~C~~C~~~~~a~K~~~i~~lP~vLi 562 (812)
.+ ...+++||+|||..|..+|.+. -++|+.|+....|+|+..|.++|.||+
T Consensus 642 vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLi 721 (823)
T COG5560 642 VVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILI 721 (823)
T ss_pred eEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChhee
Confidence 00 1136799999999999999986 399999999999999999999999999
Q ss_pred EEeeeEEEcCCcceeccceeeecCC-cccccccccC
Q 003533 563 LHMRKFVMEAGWVPKKLDVYIDVPD-IIDISHMRSK 597 (812)
Q Consensus 563 IhLkRF~~~~~~~~~Ki~~~V~fP~-~LDLs~y~~~ 597 (812)
||||||... +..+.|++.-|+||. .|||+.|...
T Consensus 722 ihLkRFss~-rsfrdKiddlVeyPiddldLs~~~~~ 756 (823)
T COG5560 722 IHLKRFSSV-RSFRDKIDDLVEYPIDDLDLSGVEYM 756 (823)
T ss_pred eehhhhhhc-ccchhhhhhhhccccccccccceEEe
Confidence 999999976 566789999999994 6999998765
No 16
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=344.88 Aligned_cols=264 Identities=22% Similarity=0.300 Sum_probs=160.0
Q ss_pred CCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhc---CCceeEeecccccCCCCceEEeccCCC-CCC-ch--hHHHH
Q 003533 190 RDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKET---GYPLAVKLGTITSDLEGADVFSYPEDD-SVV-DP--LLAQH 262 (812)
Q Consensus 190 ~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~---~H~~~v~lgtit~~~~~~~vycy~cd~-~v~-dp--~l~~~ 262 (812)
...+|+||.||+.||||.. -..||++||+.. .|+++|++- +..+|||.||. .|. +. .+.+.
T Consensus 90 ~~~iWLCLkCG~q~CG~~~-----~~~halkH~~~~r~~~Hclvin~~-------n~~~WCy~Cd~kl~~~~~kn~l~e~ 157 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNS-----ESQHALKHFLTPRSEPHCLVINLI-------NWLIWCYSCDAKLVPFDKKNLLGEK 157 (877)
T ss_pred ccceeeecccCCeeeCCCc-----ccchhhhhhcccCCCCeeEEEEee-------eeeeEEEeccchhccccchhHHHHH
Confidence 4579999999999999952 348999999975 599999983 79999999998 553 22 23322
Q ss_pred HHhhcccccccchhhhhhhhhhhhccccc-cccccccc---CCcccccCCCcccccccCCCcchhhHHHHHhhcChhHHH
Q 003533 263 LAFFGIDFSSLQKTEMTTAERELDQNTNF-DWNRIQES---GQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCT 338 (812)
Q Consensus 263 L~~~gI~~~~~~kteksl~el~ie~n~~~-e~~~~~e~---g~~l~p~~g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~ 338 (812)
...+ +.+.......++...+ +.++ ++.....+ ...+....++..+||.|||||||+|||||.|..+|.+++
T Consensus 158 vd~l-~k~a~~~~~~~spn~~----~~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d 232 (877)
T KOG1873|consen 158 VDLL-IKVASKTSLTRSPNTL----KISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRD 232 (877)
T ss_pred HHHH-HHHHhccccccCCCcc----cchhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHH
Confidence 1111 0001000000000000 0000 00000001 111334567788999999999999999999999999999
Q ss_pred HhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccCCCCCCCCCchhHHHHHHhhCCCCC
Q 003533 339 RYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFS 418 (812)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~ 418 (812)
.|.........+.- ..| ...++..|+..+.+- ......... - -++.+.....|+|+.|+..+.+.+|+|.
T Consensus 233 ~l~e~~~Sgt~v~I--~~~---~~s~l~~L~~el~~~--g~lt~al~~-~--~e~~e~~ksv~~Pr~lF~~~C~k~pqF~ 302 (877)
T KOG1873|consen 233 VLKEEKESGTSVKI--RPP---LDSSLSPLFSELSSP--GPLTYALAN-L--LEMSETTKSVITPRTLFGQFCSKAPQFR 302 (877)
T ss_pred HHHhhccCCceeEe--cCc---cccchhhHHHhccCC--cchhHHHHh-h--hhhhhccCCccCHHHHHHHHHHhCCccc
Confidence 99864322211110 011 112233333322210 000000000 0 0112346789999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhcCCCC----------------------------------CCCccceeeEEEEEEEe-C
Q 003533 419 SMRQQDALEFFLHFVDQVERVHSGKPE----------------------------------VDPTKSFKFGIEERISC-P 463 (812)
Q Consensus 419 ~~~QQDA~EFL~~LLd~L~~~~~~~~~----------------------------------~~i~~~F~g~l~~~i~C-~ 463 (812)
++.||||||+|++|||.|..++.+.-+ ..+..+|.+.+.+.+.| .
T Consensus 303 g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~ 382 (877)
T KOG1873|consen 303 GYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQA 382 (877)
T ss_pred ccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhc
Confidence 999999999999999999877632111 12235677777777777 6
Q ss_pred CCCeeeeeccceeEEeec
Q 003533 464 SGKVAYNRRLDYILSLGI 481 (812)
Q Consensus 464 C~~vs~~~e~~~~LsL~I 481 (812)
|. |+...+.|.+.+|||
T Consensus 383 ~~-vss~~~s~~~~t~pv 399 (877)
T KOG1873|consen 383 CD-VSSVHESFLSETLPV 399 (877)
T ss_pred cc-eeccchhhccccccc
Confidence 66 556666666666666
No 17
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=306.11 Aligned_cols=235 Identities=21% Similarity=0.256 Sum_probs=184.9
Q ss_pred cccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCC-CCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPAD-PTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~-p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
.+.||.|+|||||||++||||+++..+...++...+...+....+.. +......++.-+...+.
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~--------------- 134 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPG--------------- 134 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccc---------------
Confidence 36899999999999999999999999998776655444444333322 22234445444433322
Q ss_pred cccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCC-----------------------
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE----------------------- 445 (812)
Q Consensus 389 ~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~----------------------- 445 (812)
...+..|+|+.|+..++..++.|++..|||+|||+.++||.||+++....+
T Consensus 135 ------~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~ 208 (415)
T COG5533 135 ------CHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHF 208 (415)
T ss_pred ------cCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchh
Confidence 235667999999999999999999999999999999999999998854221
Q ss_pred -------------CCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCc
Q 003533 446 -------------VDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTN 511 (812)
Q Consensus 446 -------------~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 511 (812)
+.+.+.|.|+..++++| .|++.++++.+|..|++|++.-.
T Consensus 209 S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~-------------------------- 262 (415)
T COG5533 209 SHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV-------------------------- 262 (415)
T ss_pred hhhhhHHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchhe--------------------------
Confidence 45678999999999999 99999999999999999986532
Q ss_pred ccccCCCCCHHHHHHhhcCCcccCc---ccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCc
Q 003533 512 EEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDI 588 (812)
Q Consensus 512 ~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~ 588 (812)
.+.|.+|+++|.++|.+++ |.|++|+++..++|+..|..+|+|||||++||.. .|..|..
T Consensus 263 ------~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i-----------~V~~~~k 325 (415)
T COG5533 263 ------QLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHI-----------SVMGRKK 325 (415)
T ss_pred ------eecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeE-----------Eeecccc
Confidence 2569999999999999985 9999999999999999999999999999999984 4555555
Q ss_pred ccccccccCCCCCCCccCCCC
Q 003533 589 IDISHMRSKGLQPGEELLPEG 609 (812)
Q Consensus 589 LDLs~y~~~g~~~gE~~lpe~ 609 (812)
||+.++.+... +.|...++.
T Consensus 326 iD~p~gw~~~~-~~e~~v~~~ 345 (415)
T COG5533 326 IDTPQGWKNTA-SVEVNVTLL 345 (415)
T ss_pred cCCCcchhccC-Cceeccccc
Confidence 66666655432 344444443
No 18
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-33 Score=313.93 Aligned_cols=350 Identities=20% Similarity=0.321 Sum_probs=263.7
Q ss_pred CCCCcccccCCC-CCeEE-EeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeecccccCCCCceEEeccCCCCCCc
Q 003533 179 PSGWKCAKCDKR-DNLWL-NLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVD 256 (812)
Q Consensus 179 ~~~~~C~~C~~~-~~lw~-CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~~v~d 256 (812)
...+.|..|..- ..+.. |+.|+.++|-. +.|...|....+|-..+.+ ..+-.||+.|+++|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 41 LKTINCGTCGVLQIRLAVPCLICDSLGCLS--------NSHKLEHSGNKKHNNTIDV-------NNGLLYCFACPDFIYD 105 (492)
T ss_pred cccceeEEechhhhhhcccceechhccccc--------cccccccccccccccccee-------ehhhheeccCCcEeec
Confidence 345678888743 34455 89999999953 4788899888888877755 4899999999999998
Q ss_pred hhHHH---HHHhhcccccccchhhhhhhhhhhhcccccccccc---cccCCcccccCCCcccccccCCCcchhhHHHHHh
Q 003533 257 PLLAQ---HLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRI---QESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVM 330 (812)
Q Consensus 257 p~l~~---~L~~~gI~~~~~~kteksl~el~ie~n~~~e~~~~---~e~g~~l~p~~g~g~~GL~NLGNTCYmNSVLQ~L 330 (812)
..+.+ ++..+--.+.+ -...+.....+ ....-... ...+......+.-+++||+|+||||+||++||+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl 180 (492)
T KOG1867|consen 106 AELLKLADIKKYKEQPFHQ---LDSTLLTHLAE--ATVCQQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSL 180 (492)
T ss_pred cchhhHHHHHhhhccchhh---ccchhhhhhhh--hhccchhcccCCcccccccceeeecccccccccHHHHHHHHHHHh
Confidence 64433 33221001000 00000000000 00000000 0001111233567899999999999999999999
Q ss_pred hcChhHHHHhccCCchhhhhccCCCCC-CccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccCCCCCCCCCchhHHHH
Q 003533 331 FSTHAFCTRYYTQEPLKAAFEAAPADP-TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAV 409 (812)
Q Consensus 331 ~~ip~f~~~~l~~~~~~~~~~~~~~~p-~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~IsP~~f~~~ 409 (812)
.+.+..+...+...+. +.+..+ ..++.+.+.+++..+++|. .+.+++|..+.++
T Consensus 181 ~~~~~~~~~~l~~~h~-----~~~~~~~~~~l~~~~~~~~~~~~s~~--------------------~~~~~sp~~~l~~ 235 (492)
T KOG1867|consen 181 LHDPLSRSSFLSGIHS-----KEPSSSGSSCLVCDLDRLFQALYSGH--------------------NRTPYSPFELLNL 235 (492)
T ss_pred hccchhhccchhhhcc-----cCCCCCCCcchhhhhhhhhhHhhcCC--------------------CCCCcChHHHHHH
Confidence 9999999988865543 334445 6799999999999999982 2779999999999
Q ss_pred HHhhCCCCCcccccchHHHHHHHHHHHHHHhc---------CCC---CCCCccceeeEEEEEEEe-CCCCeeeeecccee
Q 003533 410 IAASHPEFSSMRQQDALEFFLHFVDQVERVHS---------GKP---EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYI 476 (812)
Q Consensus 410 i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~---------~~~---~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~ 476 (812)
+|+..|.|.+++|||||||+..+++.++++.. ... ..+++.+|.|.+.+.++| .|+..+.++++|++
T Consensus 236 ~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~d 315 (492)
T KOG1867|consen 236 VWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMD 315 (492)
T ss_pred HHHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccc
Confidence 99999999999999999999999999999871 111 357888999999999999 99999999999999
Q ss_pred EEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccC---cccccccCccccceEEEE
Q 003533 477 LSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP---DFYSTALKAKTTATKSAG 553 (812)
Q Consensus 477 LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~---~y~C~~C~~~~~a~K~~~ 553 (812)
|+|+||..-.... ...+..++.+||+.|...+... ++.|..|+.++.++|+..
T Consensus 316 isL~i~~~~~~~~------------------------~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~ 371 (492)
T KOG1867|consen 316 ISLDIPDQFTSSS------------------------VRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLT 371 (492)
T ss_pred eeeecchhccCcc------------------------cccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccc
Confidence 9999987543210 0111357999999999988754 499999999999999999
Q ss_pred ecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccC
Q 003533 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 554 i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
|.++|.+|.+|+|||.+.......|++++|.||..|+|.+|+..
T Consensus 372 ~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~ 415 (492)
T KOG1867|consen 372 IRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSS 415 (492)
T ss_pred cccCCceeeeeeccccccccccccccCcccccchhhcCCccccc
Confidence 99999999999999999854444499999999999999999987
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-32 Score=290.07 Aligned_cols=156 Identities=25% Similarity=0.411 Sum_probs=139.9
Q ss_pred ccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccc
Q 003533 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (812)
||+|+||||||||+||+|+++|+||+++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~------------------------------------------------- 31 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEF------------------------------------------------- 31 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 8999999999999999999999999987520
Q ss_pred cCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeee-e
Q 003533 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAY-N 470 (812)
Q Consensus 393 ~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~-~ 470 (812)
. +||||||||++||+.|+. .+.++|.|.+.++++| .|+.++. +
T Consensus 32 ----~-----------------------~QqDa~EFl~~ll~~l~~--------~i~~~F~g~~~~~i~C~~C~~~s~~~ 76 (240)
T cd02662 32 ----L-----------------------EQQDAHELFQVLLETLEQ--------LLKFPFDGLLASRIVCLQCGESSKVR 76 (240)
T ss_pred ----H-----------------------hhcCHHHHHHHHHHHHHH--------hccCccccEEEEEEEeCCCCCccCcc
Confidence 0 799999999999999993 4678999999999999 9999866 4
Q ss_pred eccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceE
Q 003533 471 RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATK 550 (812)
Q Consensus 471 ~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K 550 (812)
.++|++|+|+||.... .+..+|++||+.|+.+|.+++|.|++|
T Consensus 77 ~e~f~~LsL~ip~~~~-----------------------------~~~~sl~~~L~~~~~~E~l~~~~C~~C-------- 119 (240)
T cd02662 77 YESFTMLSLPVPNQSS-----------------------------GSGTTLEHCLDDFLSTEIIDDYKCDRC-------- 119 (240)
T ss_pred eeeeeeeEecccccCC-----------------------------CCCCCHHHHHHHhcCcccccCcCCCCC--------
Confidence 8999999999986431 123699999999999999999999999
Q ss_pred EEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcc
Q 003533 551 SAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDII 589 (812)
Q Consensus 551 ~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~L 589 (812)
+..|.++|+||+||||||.++..|..+|++.+|.||+.|
T Consensus 120 ~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l 158 (240)
T cd02662 120 QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL 158 (240)
T ss_pred eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence 678999999999999999998658889999999999988
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=7.1e-30 Score=280.42 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=156.1
Q ss_pred ccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhh----hh-c-c-CCC--------CCCccHHHHHHHHHHHHhcC
Q 003533 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKA----AF-E-A-APA--------DPTVDLNMQLTKLAHGLLSG 375 (812)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~----~~-~-~-~~~--------~p~~~l~~qL~kL~~~l~sg 375 (812)
++||.|+||||||||+||+||++|+||++++....... .. . . ... ....+|..+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999986431100 00 0 0 000 01236899999999999865
Q ss_pred CCCCChhhhhhhhcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC-----------
Q 003533 376 KYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP----------- 444 (812)
Q Consensus 376 ~ys~~~~~~~~~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~----------- 444 (812)
....+.|..|+..+.. .||||+||+..||+.|+.+++...
T Consensus 81 ---------------------~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~ 131 (343)
T cd02666 81 ---------------------NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDD 131 (343)
T ss_pred ---------------------CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccc
Confidence 3467999998876542 899999999999999999986432
Q ss_pred ---CCCCccceeeEEEEEEEe-CCC---CeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCC
Q 003533 445 ---EVDPTKSFKFGIEERISC-PSG---KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRP 517 (812)
Q Consensus 445 ---~~~i~~~F~g~l~~~i~C-~C~---~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 517 (812)
.+.+.++|.|++.+.++| .|+ .++.+.|+|++|+|+|+...... .....
T Consensus 132 ~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~------------------------~~~~~ 187 (343)
T cd02666 132 KEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREI------------------------VVLLE 187 (343)
T ss_pred cchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccc------------------------cccCC
Confidence 236899999999999999 886 78999999999999997522100 00012
Q ss_pred CCCHHHHHHhhcCCcccCcccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCccccccc
Q 003533 518 RVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHM 594 (812)
Q Consensus 518 ~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y 594 (812)
..+|.+||+.|+..|. |.+||++|.|||| ..++.|++.++|++|
T Consensus 188 ~~~L~d~L~~~~~~e~--------------------~~~~P~vl~~qlq-------------~~~~~~~~~~~~dry 231 (343)
T cd02666 188 PKDLYDALDRYFDYDS--------------------LTKLPQRSQVQAQ-------------LAQPLQRELISMDRY 231 (343)
T ss_pred CCCHHHHHHHhcChhh--------------------hccCCHHHHHHHh-------------hcccccchheeeccc
Confidence 3699999999998777 8999999999999 568899999999999
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-30 Score=298.23 Aligned_cols=237 Identities=26% Similarity=0.379 Sum_probs=197.5
Q ss_pred CCcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003533 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 308 g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
+.+.+||.|+|||||||++||||+.++.|+..|+...+...+. .........+.....+++..++-+
T Consensus 298 ~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-~~~~~~~~~l~~~~~~~l~~~~~~------------ 364 (653)
T KOG1868|consen 298 VFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-LDLFFGAEELESACAKLLQKLWHG------------ 364 (653)
T ss_pred ccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-cCCcccchhHHHHHHHhhhhhccC------------
Confidence 4678999999999999999999999999998888755433332 122334456677777777766654
Q ss_pred hcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCC----------------------
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE---------------------- 445 (812)
Q Consensus 388 ~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~---------------------- 445 (812)
..+..+.|+.|+..+++..+.|+++.|||||||+.++++.||+++.....
T Consensus 365 --------~~~~s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~ 436 (653)
T KOG1868|consen 365 --------HGQFSVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSK 436 (653)
T ss_pred --------CCceecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccc
Confidence 35667999999999999999999999999999999999999998854210
Q ss_pred --------------CCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCC
Q 003533 446 --------------VDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVT 510 (812)
Q Consensus 446 --------------~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 510 (812)
..+.++|.|++++.++| .|+.+++++++|.+|+|+||......
T Consensus 437 ~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~---------------------- 494 (653)
T KOG1868|consen 437 KSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAG---------------------- 494 (653)
T ss_pred hhHHHHHhhccccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccc----------------------
Confidence 23688999999999999 99999999999999999998754321
Q ss_pred cccccCCCCCHHHHHHhhcCCcccCc---ccccccCccccce--EEEEecccCCceEEEeeeEEEcCCcceeccceeeec
Q 003533 511 NEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTAT--KSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDV 585 (812)
Q Consensus 511 ~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~a~--K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~f 585 (812)
.+++|++|++.|+..|.+++ |.|+.|+++..++ |+..|.+||++|++||+||..+.+| ..|....|+|
T Consensus 495 ------~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~-~~k~~~~v~~ 567 (653)
T KOG1868|consen 495 ------GKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNS-FNKLSTGVDF 567 (653)
T ss_pred ------cccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCccc-ccccceeecc
Confidence 24799999999999999997 9999999999885 9999999999999999999998545 4699999999
Q ss_pred CCc-cccccc
Q 003533 586 PDI-IDISHM 594 (812)
Q Consensus 586 P~~-LDLs~y 594 (812)
|.. +|+.++
T Consensus 568 ~~~~~~~~~~ 577 (653)
T KOG1868|consen 568 PLREADLSPR 577 (653)
T ss_pred chHhhhhchh
Confidence 964 666653
No 22
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.96 E-value=2.2e-28 Score=257.17 Aligned_cols=353 Identities=21% Similarity=0.282 Sum_probs=262.7
Q ss_pred CCCcccccccccCCCccCCCCC-CcccccCCCCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeeccccc
Q 003533 160 QTSAYAMNLQQIDNGVIIPPSG-WKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITS 238 (812)
Q Consensus 160 ~~c~h~~~l~q~~~~~~~~~~~-~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~ 238 (812)
+.|.|.++.. . ..++.+. ..|+.....-|.+.||.||...-||. ..+||..|..++||.+++++.|
T Consensus 11 ~~~~yldtv~---r-~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~------~kS~A~~h~l~~ghhvf~nl~t--- 77 (442)
T KOG2026|consen 11 PNYAYLETVV---R-RVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRG------EKSHAYTHSLEEGHHVFLNLST--- 77 (442)
T ss_pred cchHhhhhhh---h-hhccccCCCCCcccccccceeeeeeeCchhhCcC------ccccchhccccccccceecccc---
Confidence 4566665443 1 2344443 56888888889999999999988776 5699999999999999999941
Q ss_pred CCCCceEEeccCCCCCCchhHHHHHHhhcccccccchhhhhhhhhhhh-cccccccccccccCCcccccCCCcccccccC
Q 003533 239 DLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELD-QNTNFDWNRIQESGQDVEPLFGPGYTGLVNL 317 (812)
Q Consensus 239 ~~~~~~vycy~cd~~v~dp~l~~~L~~~gI~~~~~~kteksl~el~ie-~n~~~e~~~~~e~g~~l~p~~g~g~~GL~NL 317 (812)
....|+...++.+.||.+.+..-. +.+. ..+++ . -.++ .|.++..... + ..|-||.+||.|+
T Consensus 78 ---elkfyvlpe~~ei~d~s~~~ikhs--lkpt-ftr~~--c--p~lD~~nr~~~raLd---~----~tYLpG~VGLnNi 140 (442)
T KOG2026|consen 78 ---ELKFYVLPENYEIDDPSLGDIKHS--LKPT-FTKTD--C--PNLDKVNRKLSRALD---G----STYLPGFVGLNNI 140 (442)
T ss_pred ---ceeEEecchhccccCchhhhhhcc--ccce-eehhh--c--ccccccchhhhhhhc---C----Ccceeeeeccchh
Confidence 388899999999999987765421 1110 01111 0 0111 1333322111 1 2467999999999
Q ss_pred CCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcccccCCCC
Q 003533 318 GNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTK 397 (812)
Q Consensus 318 GNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~ 397 (812)
-++-|.|+|||+|.+.+++|++|+... ...+....+...|..+.+.||+.+ ..
T Consensus 141 k~~dy~n~vl~~ls~v~PlRnyFl~~~--------n~~d~~~~lv~rl~~l~rklw~~r-------------------~f 193 (442)
T KOG2026|consen 141 KANDYANAVLQALSHVVPLRNYFLLEE--------NYFDNLTELVQRLGELIRKLWNPR-------------------NF 193 (442)
T ss_pred hhHHHHHHHHHHHhccchhhhhhcccc--------cccchhHHHHHHHHHHHHHhcChh-------------------hh
Confidence 999999999999999999999998642 112334457888899999999875 36
Q ss_pred CCCCCchhHHHHHHhh-CCCCCcccccchHHHHHHHHHHHHHHhcCCC--CCCCccceeeEEEEEEEe-C----CCCeee
Q 003533 398 QEGIPPRMFKAVIAAS-HPEFSSMRQQDALEFFLHFVDQVERVHSGKP--EVDPTKSFKFGIEERISC-P----SGKVAY 469 (812)
Q Consensus 398 ~~~IsP~~f~~~i~~~-~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~--~~~i~~~F~g~l~~~i~C-~----C~~vs~ 469 (812)
+..++|..|...+-.. +.+|..++|-|+.|||.|||+.||..++... +++++..|+|.++..-+= . --....
T Consensus 194 k~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i 273 (442)
T KOG2026|consen 194 KGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEI 273 (442)
T ss_pred cccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceE
Confidence 7899999999888664 5689999999999999999999999986443 478999999998766554 3 223455
Q ss_pred eeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccce
Q 003533 470 NRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTAT 549 (812)
Q Consensus 470 ~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~ 549 (812)
..-+|+.|.|++|..+... + + -+....|++.|.+.|..|....+-+ +. ....+
T Consensus 274 ~~~~Fl~LtLDLP~~plfk-D---------------~----~e~niiPQV~l~~lL~Kf~g~t~~e-~~-----~~~~~- 326 (442)
T KOG2026|consen 274 SVMPFLYLTLDLPPPPLFK-D---------------V----MEKNIIPQVALFDLLKKFDGETVTE-VV-----TPKLA- 326 (442)
T ss_pred EEEeeEEEEecCCCCCccc-c---------------h----hhhcccccchHHHHHHHhcCceeee-ec-----chhhh-
Confidence 6678999999999865421 0 0 0224578899999999998766544 21 12233
Q ss_pred EEEEecccCCceEEEeeeEEEcCCcceeccceeeecC-CcccccccccC
Q 003533 550 KSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP-DIIDISHMRSK 597 (812)
Q Consensus 550 K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP-~~LDLs~y~~~ 597 (812)
++.++.++|+|||+|++||.-+ +|...|+.+.|+|| ..+|+.+++..
T Consensus 327 ~rf~l~k~P~ylifh~~rF~kN-n~f~ekNpTl~~f~~~~~~~~~~~~~ 374 (442)
T KOG2026|consen 327 MRFRLTKLPRYLIFHMKRFKKN-NFFKEKNPTLVEFPYSEVDILHVLDR 374 (442)
T ss_pred hheeeecCCceEEEEeeecccc-CcccccCCceeeccCCccchhhhhhh
Confidence 8999999999999999999988 79999999999999 67888887765
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.95 E-value=4.6e-28 Score=255.94 Aligned_cols=186 Identities=25% Similarity=0.440 Sum_probs=140.4
Q ss_pred ccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcc
Q 003533 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANA 390 (812)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~ 390 (812)
++||.|+||||||||+||+|+++|+|+++++..................++.++|.+|+..|+++.
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------------- 66 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN-------------- 66 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC--------------
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc--------------
Confidence 589999999999999999999999999999864221222222333455679999999999999861
Q ss_pred cccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC------------CCCCccceeeEEEE
Q 003533 391 ATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP------------EVDPTKSFKFGIEE 458 (812)
Q Consensus 391 ~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~------------~~~i~~~F~g~l~~ 458 (812)
.....+.|..|+..++...+.|..+.||||+|||..||+.|+++..... .+.+.++|++.+.+
T Consensus 67 -----~~~~~i~~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 141 (269)
T PF00443_consen 67 -----SSDSSISPSDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFES 141 (269)
T ss_dssp -----SSSSEEHCHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEE
T ss_pred -----ccccceeeccccccccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccc
Confidence 2456899999999999999999999999999999999999999886421 12344455555555
Q ss_pred EEEeCCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCccc
Q 003533 459 RISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFY 538 (812)
Q Consensus 459 ~i~C~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~ 538 (812)
.++|
T Consensus 142 ~~~c---------------------------------------------------------------------------- 145 (269)
T PF00443_consen 142 SIKC---------------------------------------------------------------------------- 145 (269)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 5555
Q ss_pred ccccCccccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecC-CcccccccccC
Q 003533 539 STALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVP-DIIDISHMRSK 597 (812)
Q Consensus 539 C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP-~~LDLs~y~~~ 597 (812)
..|+.. +.+|.++|+||+|+|+||.++.. +...|+...|.|| ++|||++|+..
T Consensus 146 -~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~ 200 (269)
T PF00443_consen 146 -SSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEK 200 (269)
T ss_dssp -TTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSS
T ss_pred -cccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhcc
Confidence 444433 67899999999999999988743 4678999999999 79999999876
No 24
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.3e-28 Score=256.90 Aligned_cols=138 Identities=29% Similarity=0.458 Sum_probs=124.5
Q ss_pred cccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHH
Q 003533 421 RQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLK 499 (812)
Q Consensus 421 ~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~ 499 (812)
.||||+||+++||+.|+ +.+.++|+|.+.++++| .|+.++++.++++.|+|+||.....
T Consensus 21 ~QqDa~Ef~~~ll~~l~--------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~------------ 80 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH--------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGD------------ 80 (230)
T ss_pred hhhhHHHHHHHHHHHHh--------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCC------------
Confidence 49999999999999999 25789999999999999 9999999999999999999874310
Q ss_pred HhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---ccccccCccccceEEEEecccCCceEEEeeeEEEcCCcce
Q 003533 500 MERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVP 576 (812)
Q Consensus 500 ~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~ 576 (812)
.+..+|++||+.|+.+|.+++ +.|++|++++.+.|+.+|.++|++|+|||+||.++ ++..
T Consensus 81 ----------------~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~-~~~~ 143 (230)
T cd02674 81 ----------------APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS-RGST 143 (230)
T ss_pred ----------------CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC-CCCc
Confidence 234799999999999999875 89999999999999999999999999999999998 4777
Q ss_pred eccceeeecCC-cccccccc
Q 003533 577 KKLDVYIDVPD-IIDISHMR 595 (812)
Q Consensus 577 ~Ki~~~V~fP~-~LDLs~y~ 595 (812)
.|++..|.||. .|||++|+
T Consensus 144 ~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 144 RKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred ccCCceEecccccccccccc
Confidence 89999999995 69999886
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=4.5e-27 Score=247.37 Aligned_cols=127 Identities=20% Similarity=0.353 Sum_probs=109.3
Q ss_pred HhhCCCCCcccccchHHHHHHHHHHHHHHhcCC-----------CCCCCccceeeEEEEEEEe-CCCCeeeeeccceeEE
Q 003533 411 AASHPEFSSMRQQDALEFFLHFVDQVERVHSGK-----------PEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILS 478 (812)
Q Consensus 411 ~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~-----------~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~Ls 478 (812)
++.+|+|++++||||||||++|||.|+++.... ....+.++|+|.++++++| .|++++++.+++++|+
T Consensus 22 ~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~ 101 (245)
T cd02673 22 GKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLD 101 (245)
T ss_pred hhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceec
Confidence 456789999999999999999999999865321 1124568999999999999 9999999999999999
Q ss_pred eecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEEecccC
Q 003533 479 LGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFP 558 (812)
Q Consensus 479 L~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i~~lP 558 (812)
|+||... ..+|++|++.|+.++.++ |.|++|+++ .+.|+.+|.++|
T Consensus 102 L~i~~~~--------------------------------~~~le~l~~~~~~~~~~e-~~C~~C~~~-~a~k~~~i~~~P 147 (245)
T cd02673 102 VSMIDNK--------------------------------LDIDELLISNFKTWSPIE-KDCSSCKCE-SAISSERIMTFP 147 (245)
T ss_pred cccccCC--------------------------------cchHHHHHHHhhcccccC-ccCCCCCCc-cceeechhhhCC
Confidence 9997531 136889999999988887 999999976 788999999999
Q ss_pred CceEEEeeeEEEc
Q 003533 559 DYLVLHMRKFVME 571 (812)
Q Consensus 559 ~vLiIhLkRF~~~ 571 (812)
+||+||||||.+.
T Consensus 148 ~vL~i~lkRf~~~ 160 (245)
T cd02673 148 ECLSINLKRYKLR 160 (245)
T ss_pred hhhEEeeEeeeec
Confidence 9999999999875
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=6.9e-26 Score=235.82 Aligned_cols=147 Identities=27% Similarity=0.409 Sum_probs=130.7
Q ss_pred cccchHHHHHHHHHHHHHHhcC---------CCCCCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHH
Q 003533 421 RQQDALEFFLHFVDQVERVHSG---------KPEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKE 490 (812)
Q Consensus 421 ~QQDA~EFL~~LLd~L~~~~~~---------~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~ 490 (812)
.||||+|||..+|+.|+.+... .....+.++|.+.+.++++| .|+..+++...+..++|++|....
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~---- 96 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL---- 96 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC----
Confidence 5999999999999999998764 22467899999999999999 999999999999999999986421
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccC--ccccceEEEEecccCCceEEEeeeE
Q 003533 491 ELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALK--AKTTATKSAGLTSFPDYLVLHMRKF 568 (812)
Q Consensus 491 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~--~~~~a~K~~~i~~lP~vLiIhLkRF 568 (812)
+..+|+++|+.++..|.++++.|..|+ +.+.+.++..|.++|+||+||++||
T Consensus 97 --------------------------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~ 150 (255)
T cd02257 97 --------------------------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRF 150 (255)
T ss_pred --------------------------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeece
Confidence 236999999999999999999999998 7889999999999999999999999
Q ss_pred EEcCCcceeccceeeecCCcccccccccC
Q 003533 569 VMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 569 ~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
.++..|...|++.+|.||++|++.+++..
T Consensus 151 ~~~~~~~~~k~~~~v~~~~~l~~~~~~~~ 179 (255)
T cd02257 151 SFNEDGTKEKLNTKVSFPLELDLSPYLSE 179 (255)
T ss_pred eeccccccccCCCeEeCCCcccCcccccc
Confidence 99855888999999999999999988753
No 27
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-27 Score=266.04 Aligned_cols=233 Identities=18% Similarity=0.247 Sum_probs=196.0
Q ss_pred CcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCC-CCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPA-DPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~-~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
.+++||+|-|+|||||+++|-|.++|.++.-.+...+. ...+. .-...+.++++.+|..|..+
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~----td~pd~s~~e~vl~~lQ~iF~hL~~s------------ 156 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT----TDLPDMSGDEKVLRHLQVIFGHLAAS------------ 156 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc----ccchhhcchHHHHHHHHHHHHHHHHH------------
Confidence 47899999999999999999999999999877643211 00000 11223889999999877543
Q ss_pred hcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCC-CCCccceeeEEEEEEEe-CCC
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE-VDPTKSFKFGIEERISC-PSG 465 (812)
Q Consensus 388 ~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~-~~i~~~F~g~l~~~i~C-~C~ 465 (812)
.-.++.|..|.+.++.-.......+||||-|||..|||.+++.+++.+. ....+.|+|.....-.| .|.
T Consensus 157 ---------~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~Cp 227 (944)
T KOG1866|consen 157 ---------QLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCP 227 (944)
T ss_pred ---------hhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCC
Confidence 2457889999988877667788899999999999999999999986553 45678999999999999 999
Q ss_pred CeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---cccccc
Q 003533 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTAL 542 (812)
Q Consensus 466 ~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C 542 (812)
+.=...|+|..|+|+|.. -+|+++|+.|.+.|.++| |+|++|
T Consensus 228 HRY~~eE~F~~l~l~i~~-----------------------------------~nLeesLeqfv~gevlEG~nAYhCeKC 272 (944)
T KOG1866|consen 228 HRYECEESFTTLNLDIRH-----------------------------------QNLEESLEQFVKGEVLEGANAYHCEKC 272 (944)
T ss_pred cccCccccceeeeeeccc-----------------------------------chHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 987788999999999841 389999999999999998 999999
Q ss_pred CccccceEEEEecccCCceEEEeeeEEEcC-CcceeccceeeecCCcccccccccCCCCC
Q 003533 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEA-GWVPKKLDVYIDVPDIIDISHMRSKGLQP 601 (812)
Q Consensus 543 ~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~-~~~~~Ki~~~V~fP~~LDLs~y~~~g~~~ 601 (812)
++|....|++.|++||++|+||||||.|+- +....|-+..++||.+|||.||+.+|...
T Consensus 273 deK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~ 332 (944)
T KOG1866|consen 273 DEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAK 332 (944)
T ss_pred hhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhh
Confidence 999999999999999999999999999961 12456999999999999999999998865
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-26 Score=259.14 Aligned_cols=231 Identities=19% Similarity=0.257 Sum_probs=193.5
Q ss_pred CCcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003533 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 308 g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
..|++||+|.|.||||||.||+||.+..||+..+... .....+.+.....|+++|..|..+
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ip-------Td~p~grdSValaLQr~Fynlq~~------------ 250 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIP-------TDHPRGRDSVALALQRLFYNLQTG------------ 250 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCC-------CCCCCccchHHHHHHHHHHHHhcc------------
Confidence 3689999999999999999999999999999987532 122345566889999999999876
Q ss_pred hcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC-CCCCccceeeEEEEEEEe-CCC
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSG 465 (812)
Q Consensus 388 ~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C~ 465 (812)
..+++...|-...+.. .+....|+|.|||=+.|.|.|++..+... ..-+..+|-|++.+.+.| .-.
T Consensus 251 ----------~~PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvn 318 (1089)
T COG5077 251 ----------EEPVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVN 318 (1089)
T ss_pred ----------CCCcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEec
Confidence 3577778877766543 56677899999999999999999765433 345788999999999999 999
Q ss_pred CeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---cccccc
Q 003533 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTAL 542 (812)
Q Consensus 466 ~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C 542 (812)
..+.+.+.||++.|.+... -+|++.+++|.+.|+++| |.|+.-
T Consensus 319 yEsarvedfwdiqlNvK~~----------------------------------knLqeSfr~yIqvE~l~GdN~Y~ae~~ 364 (1089)
T COG5077 319 YESARVEDFWDIQLNVKGM----------------------------------KNLQESFRRYIQVETLDGDNRYNAEKH 364 (1089)
T ss_pred hhhhhHHHHHHHHhcccch----------------------------------hhHHHHHHHhhhheeccCCcccccccc
Confidence 9999999999999988331 389999999999999998 555544
Q ss_pred CccccceEEEEecccCCceEEEeeeEEEcCCc-ceeccceeeecCCcccccccccCCCCCCCc
Q 003533 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAGW-VPKKLDVYIDVPDIIDISHMRSKGLQPGEE 604 (812)
Q Consensus 543 ~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~-~~~Ki~~~V~fP~~LDLs~y~~~g~~~gE~ 604 (812)
| .+.|.|-.-|.+||+||-+|||||.++.+. +..||+...+||+++||.||+++.....|.
T Consensus 365 G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen 426 (1089)
T COG5077 365 G-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSEN 426 (1089)
T ss_pred c-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcc
Confidence 4 578999999999999999999999998543 567999999999999999999987665553
No 29
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-25 Score=274.06 Aligned_cols=227 Identities=23% Similarity=0.298 Sum_probs=196.7
Q ss_pred Ccc-cccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003533 309 PGY-TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 309 ~g~-~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
+|+ +||+|+||||||||+||+||.++.||+.++.... .....+|...+..+|+.||..|..+
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~-----~~~~~~~~~~v~~~lq~lF~~LQ~s------------ 229 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP-----FTGHEDPRRSIPLALQRLFYELQMS------------ 229 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC-----CCCcccccchHHHHHHHHHHHHhhc------------
Confidence 445 9999999999999999999999999999986441 1234466777999999999999765
Q ss_pred hcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC-CCCCccceeeEEEEEEEe-CCC
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSG 465 (812)
Q Consensus 388 ~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C~ 465 (812)
...+|.|..|...++... .....|||++||++.|+|.|++...... ...+.++|.|.+.+.+.| .|.
T Consensus 230 ---------~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~ 298 (1093)
T KOG1863|consen 230 ---------KRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVD 298 (1093)
T ss_pred ---------CCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEeee
Confidence 345899999999988766 5566999999999999999999886554 467889999999999999 999
Q ss_pred CeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc--ccccccC
Q 003533 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYSTALK 543 (812)
Q Consensus 466 ~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~--y~C~~C~ 543 (812)
..+.+.+.|+++.|++-. ..+|.++|+.|+..|.++| -+|..|.
T Consensus 299 ~~s~r~e~f~d~ql~~~g----------------------------------~~nl~~sf~~y~~~E~l~gdn~~~~~~~ 344 (1093)
T KOG1863|consen 299 FESSRSESFLDLQLNGKG----------------------------------VKNLEDSLHLYFEAEILLGDNKYDAECH 344 (1093)
T ss_pred eeccccccccCccccccc----------------------------------hhhHHHHHHHhhhHHHhcCCcccccccc
Confidence 999999999999998732 2369999999999999986 5699999
Q ss_pred ccccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCcccccccccC
Q 003533 544 AKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 544 ~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
..+.|.|...|.+||+||.|||+||.++.. .+..|++..+.||..|+|.+|++.
T Consensus 345 ~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~ 399 (1093)
T KOG1863|consen 345 GLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR 399 (1093)
T ss_pred chhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc
Confidence 999999999999999999999999999743 467799999999999999999885
No 30
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=3.6e-24 Score=221.66 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred ccchHHHHHHHHHHHHHHhcCC---------CCCCCccceeeEEEEEEEeCCCCeeeeeccceeEEeecCCcccccHHHH
Q 003533 422 QQDALEFFLHFVDQVERVHSGK---------PEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEEL 492 (812)
Q Consensus 422 QQDA~EFL~~LLd~L~~~~~~~---------~~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~ 492 (812)
||||+||++.||+.|++.++.. ..+.+.++|+|.+.+++.| |+..+.+.|+|++|+|+|..
T Consensus 22 QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~-~~~~s~~~E~F~~L~l~i~~--------- 91 (228)
T cd02665 22 QQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL-EGKPFCNCETFGQYPLQVNG--------- 91 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE-CCCcccccCccEEEEEEECC---------
Confidence 8999999999999999988632 1346899999999976666 66678899999999999842
Q ss_pred HHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEEecccCCceEEEeeeEEEcC
Q 003533 493 AAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA 572 (812)
Q Consensus 493 ~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~ 572 (812)
..+|++||+.|+.+|.+++..|. ....+.|+.+|.++|+||+||||||.++.
T Consensus 92 -------------------------~~~L~e~L~~~~~ee~l~~~~~~---~~~~~~~~~~i~~lP~vL~i~LkRF~~~~ 143 (228)
T cd02665 92 -------------------------YGNLHECLEAAMFEGEVELLPSD---HSVKSGQERWFTELPPVLTFELSRFEFNQ 143 (228)
T ss_pred -------------------------CCCHHHHHHHhhhhccccccccc---chhhhhhhhhhhhCChhhEEEeEeeEEcC
Confidence 14899999999999999864443 34567788899999999999999999984
Q ss_pred CcceeccceeeecCCccccccc
Q 003533 573 GWVPKKLDVYIDVPDIIDISHM 594 (812)
Q Consensus 573 ~~~~~Ki~~~V~fP~~LDLs~y 594 (812)
....|++..|.||.+|.-..|
T Consensus 144 -~~~~Ki~~~v~FP~~l~~~~Y 164 (228)
T cd02665 144 -GRPEKIHDKLEFPQIIQQVPY 164 (228)
T ss_pred -CccEECCEEEEeeCccCCcee
Confidence 567899999999998744444
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-23 Score=254.01 Aligned_cols=156 Identities=24% Similarity=0.357 Sum_probs=136.8
Q ss_pred CCcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003533 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 308 g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
.+|.+||.|+||||||||.+|+|.+.+.++++|+...+..++...........+...+..+...+|++.
T Consensus 243 ~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~----------- 311 (842)
T KOG1870|consen 243 ERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN----------- 311 (842)
T ss_pred cccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC-----------
Confidence 479999999999999999999999999999999987665555555566667778888888999999872
Q ss_pred hcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC-----------------------
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP----------------------- 444 (812)
Q Consensus 388 ~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~----------------------- 444 (812)
+..|.|..++..++...++|.++.|||.+||+-+|+|.+|+.+....
T Consensus 312 ----------~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~ 381 (842)
T KOG1870|consen 312 ----------KSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVW 381 (842)
T ss_pred ----------ccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHH
Confidence 24799999999999999999999999999999999999998874321
Q ss_pred -------CCCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCc
Q 003533 445 -------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLD 484 (812)
Q Consensus 445 -------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~ 484 (812)
.+.+.++|.|.+++.++| .|++++.++++|..|+||+|..
T Consensus 382 ~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~ 429 (842)
T KOG1870|consen 382 DYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGK 429 (842)
T ss_pred HhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCC
Confidence 156899999999999999 9999999999999999999964
No 32
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4e-24 Score=236.67 Aligned_cols=214 Identities=22% Similarity=0.316 Sum_probs=172.8
Q ss_pred CCCcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhh
Q 003533 307 FGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDA 386 (812)
Q Consensus 307 ~g~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~ 386 (812)
.+.|++||.|-.-|||+|+.+|+|+..|.|++.++... . ..-...++.
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~--~------~~~et~dlt------------------------ 130 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE--N------DSLETKDLT------------------------ 130 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC--c------ccccchhhH------------------------
Confidence 35789999999999999999999999999999887421 0 001111222
Q ss_pred hhcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC-CCCCccceeeEEEEEEEe-CC
Q 003533 387 AANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PS 464 (812)
Q Consensus 387 ~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C 464 (812)
..+|.... ..++|+|.+|+-+.++|.|+-..+... ...|.+++.|.++..+.| +|
T Consensus 131 ---------------------~sfgw~s~--ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c 187 (1203)
T KOG4598|consen 131 ---------------------QSFGWTSN--EAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKC 187 (1203)
T ss_pred ---------------------hhcCCCcc--hhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHc
Confidence 22222211 246899999999999999998775433 357899999999999999 99
Q ss_pred CCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc---ccccc
Q 003533 465 GKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTA 541 (812)
Q Consensus 465 ~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~ 541 (812)
+..+++.+.|.+|+|+|..-.... .| -+++++|.+|.+||.++| |.|++
T Consensus 188 ~~e~~~~d~fld~pl~v~pfg~~~-----ay-----------------------~sieeal~afvqpe~ldg~nqy~ce~ 239 (1203)
T KOG4598|consen 188 GRESVKTDYFLDLPLAVKPFGAIH-----AY-----------------------KSVEEALTAFVQPELLDGSNQYMCEN 239 (1203)
T ss_pred CccccccceeecccccccCCcchh-----hh-----------------------hhHHHHHHHhcChhhcCCccHHHHhh
Confidence 999999999999999885543321 12 389999999999999997 99999
Q ss_pred cCccccceEEEEecccCCceEEEeeeEEEcCCcce-eccceeeecCCcccccccccCCCCCCC
Q 003533 542 LKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVP-KKLDVYIDVPDIIDISHMRSKGLQPGE 603 (812)
Q Consensus 542 C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~-~Ki~~~V~fP~~LDLs~y~~~g~~~gE 603 (812)
|+++..|.|-++|++||-+|.||||||.++.+... .|++..|.||..|||..|..+.-+.||
T Consensus 240 ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~ 302 (1203)
T KOG4598|consen 240 CKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTT 302 (1203)
T ss_pred hhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcc
Confidence 99999999999999999999999999999876554 499999999999999999876544444
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.84 E-value=1.1e-20 Score=205.12 Aligned_cols=228 Identities=19% Similarity=0.203 Sum_probs=192.2
Q ss_pred cccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhccc
Q 003533 312 TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAA 391 (812)
Q Consensus 312 ~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~~ 391 (812)
.||.|-+++||+||+||+|+.+|++++.++... . .....|+.|+|+-||+.|.++
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~------~---c~~e~cL~cELgfLf~ml~~~---------------- 55 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL------E---CPKEFCLLCELGFLFDMLDSK---------------- 55 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc------C---CCccccHHHHHHHHHHHhhhh----------------
Confidence 499999999999999999999999999998532 1 246679999999999999732
Q ss_pred ccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC--------------CCCCccceeeEEE
Q 003533 392 TTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP--------------EVDPTKSFKFGIE 457 (812)
Q Consensus 392 ~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~--------------~~~i~~~F~g~l~ 457 (812)
.......+..|...++......+-+.|||.++|+++||++|+.+..... ...+.++|+....
T Consensus 56 ----~~g~~cq~sNflr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 131 (295)
T PF13423_consen 56 ----AKGINCQASNFLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFE 131 (295)
T ss_pred ----cCCCcChHHHHHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCccee
Confidence 1234566778888777665445566799999999999999999875332 2467889999999
Q ss_pred EEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCc
Q 003533 458 ERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD 536 (812)
Q Consensus 458 ~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~ 536 (812)
..++| .|+..+.+.+....+.|..|... ..+++.++|+.++..|....
T Consensus 132 ~~~~c~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------~~~tf~~~Le~sl~~e~~~~ 180 (295)
T PF13423_consen 132 TTIRCTSCGHESVKESSTLVLDLPYPPSN-------------------------------SNVTFSQVLEHSLNREQQTR 180 (295)
T ss_pred eeecccccCCeEEeecceeeeeccCCCCC-------------------------------ccchHHHHHHHHHhhccccc
Confidence 99999 99999988888888888777621 23699999999999999988
Q ss_pred ccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccceeeecCCcccccccccCCCC
Q 003533 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQ 600 (812)
Q Consensus 537 y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~g~~ 600 (812)
.+|+.|++.+....+.+|.++|+||.|.++|+..+..| +.|....+.+|..+++..++..+.+
T Consensus 181 a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w-~~~~~~~~~ip~~i~~~~~~~~~~~ 243 (295)
T PF13423_consen 181 AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFW-PKKNWLKIWIPPSINLPHFIADDSQ 243 (295)
T ss_pred ccccccccccceeeeeeccCCCcEEEEEccCCCccccc-ccccCCceecceeeecccccccccc
Confidence 99999999999999999999999999999999998668 8899999999999999999766543
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.84 E-value=2.1e-20 Score=199.37 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=144.4
Q ss_pred CcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
.+++||.|.|.|||+||+||+|+++|+||+.... .. .......|+.|+|..||..+
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~------~~--~~~~~~~~l~~el~~lfs~~---------------- 68 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI------IL--VACPKESCLLCELGYLFSTL---------------- 68 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHHh------hc--ccCCcCccHHHHHHHHHHHH----------------
Confidence 4689999999999999999999999999997221 11 11234578999999988211
Q ss_pred cccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEeCCCCee
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVA 468 (812)
Q Consensus 389 ~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C~C~~vs 468 (812)
.+-|-++|++.+..+..... ..|++++
T Consensus 69 ------------------------------------iq~F~~fll~~i~~~~~~~~-----------------~~C~~~s 95 (268)
T cd02672 69 ------------------------------------IQNFTRFLLETISQDQLGTP-----------------FSCGTSR 95 (268)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHhcccC-----------------CCCCcee
Confidence 13477888888887654211 3699999
Q ss_pred eeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccc
Q 003533 469 YNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTA 548 (812)
Q Consensus 469 ~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a 548 (812)
++.+++++|+||+|.... .+.++|.+||+.|+.+|.+.+++|++|++++.|
T Consensus 96 ~~~~~~~~LsLpip~~~~-----------------------------~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a 146 (268)
T cd02672 96 NSVSLLYTLSLPLGSTKT-----------------------------SKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPL 146 (268)
T ss_pred eccccceeeeeecCcccc-----------------------------ccCCCHHHHHHHHhhhhhcccccccccCccccc
Confidence 999999999999986320 134799999999999999878999999999999
Q ss_pred eEEEEecccCC----ceEEEeeeEEEcCC--c----ceeccceeeecCCccccccccc
Q 003533 549 TKSAGLTSFPD----YLVLHMRKFVMEAG--W----VPKKLDVYIDVPDIIDISHMRS 596 (812)
Q Consensus 549 ~K~~~i~~lP~----vLiIhLkRF~~~~~--~----~~~Ki~~~V~fP~~LDLs~y~~ 596 (812)
+|+.+|.++|+ ||+||||||..... | ...|++..|.||..+|+..+..
T Consensus 147 ~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 204 (268)
T cd02672 147 EQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKN 204 (268)
T ss_pred EEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhc
Confidence 99999999999 99999999986421 1 2358888999998887766543
No 35
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.4e-19 Score=186.25 Aligned_cols=253 Identities=19% Similarity=0.270 Sum_probs=175.3
Q ss_pred CcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhh---
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKD--- 385 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~--- 385 (812)
..++|++|-||-|||||+||+|..+++|-+.+.... . ...........+.-.+..+.....+..|.+......
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~--~--~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~ 101 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK--R--ADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRV 101 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh--h--hcCceecccchhHHHHHHHHhhccccchhhhhhhccCCc
Confidence 567999999999999999999999999988764321 0 000011122233333333333332222211100000
Q ss_pred ----hhhcccccCCCCCCCCCchhHHHHHHhhCCC---CCcccccchHHHHHHHHHHHHHHhcCCC--------------
Q 003533 386 ----AAANAATTTDTKQEGIPPRMFKAVIAASHPE---FSSMRQQDALEFFLHFVDQVERVHSGKP-------------- 444 (812)
Q Consensus 386 ----~~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~---F~~~~QQDA~EFL~~LLd~L~~~~~~~~-------------- 444 (812)
....++.........+.|-.+..-++. .+. ...++|.||.|||.++||.||++.-...
T Consensus 102 ~~~~~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 102 PEHVVEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccccchhhhhhhcccCccccCCchhhhccc-CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 000001122344555666555444432 233 3458999999999999999998863110
Q ss_pred ------------------------------------------CCCCccceeeEEEEEEEeCCCCeeeeeccceeEEeecC
Q 003533 445 ------------------------------------------EVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIP 482 (812)
Q Consensus 445 ------------------------------------------~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~Ip 482 (812)
.+.++++|+|++++.+.-...+++.+.+||..|.|+|-
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQ 260 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeee
Confidence 05789999999999998867777899999999999996
Q ss_pred CcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEEecccCCceE
Q 003533 483 LDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLV 562 (812)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i~~lP~vLi 562 (812)
.+.. .++.++|..+...|.+.+|.-. -|....+.+++.+.+||++|+
T Consensus 261 ~~~i--------------------------------~sv~~ales~~~re~lp~~st~-s~~eV~~s~q~~leklp~vli 307 (420)
T KOG1871|consen 261 SEKI--------------------------------HSVQDALESLVARESLPGYSTK-SGQEVEASSQTTLEKLPPVLI 307 (420)
T ss_pred cccc--------------------------------CCHHHHhhccChhhcccceecC-CCCeechhhhhhHhhcchhhh
Confidence 5432 4889999999999999965554 788899999999999999999
Q ss_pred EEeeeEEEcCCcceeccceeeecCCcccccccc-cCCC
Q 003533 563 LHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMR-SKGL 599 (812)
Q Consensus 563 IhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~-~~g~ 599 (812)
+|+|||.|......+|+...+++|-+|.++.=+ ++|+
T Consensus 308 lhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gv 345 (420)
T KOG1871|consen 308 LHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGL 345 (420)
T ss_pred hhhhHHHHHhccchhhhchhhhccceeeechhhhcccc
Confidence 999999998666778999999999998888643 3444
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-17 Score=192.92 Aligned_cols=257 Identities=18% Similarity=0.205 Sum_probs=193.2
Q ss_pred CcccccccCCCcchhh--HHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhh
Q 003533 309 PGYTGLVNLGNSCYLA--ATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDA 386 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmN--SVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~ 386 (812)
-...|..|.+++||-| +|.|.+...-.++...+... ............+...+..++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~------------ 293 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYL----TSLKRSYIIKEELLTCLLDLFSSISS------------ 293 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchh----hcccchhhhhHHHHHHhhhhccchhh------------
Confidence 3568999999999999 99999988887775443221 00000001111222222222221111
Q ss_pred hhcccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcCCC----------------------
Q 003533 387 AANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP---------------------- 444 (812)
Q Consensus 387 ~~~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~~~---------------------- 444 (812)
.......|.|..|...+++....|..+.|||||||+.++++.+++......
T Consensus 294 -------~~~~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~ 366 (587)
T KOG1864|consen 294 -------RKKLVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAAS 366 (587)
T ss_pred -------hcccccccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccccccc
Confidence 123456789999999999999999999999999999999999987553211
Q ss_pred -----------CCCCccceeeEEEEEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcc
Q 003533 445 -----------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNE 512 (812)
Q Consensus 445 -----------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 512 (812)
...++.+|.|++..+..| .|..+++..+.|.+++++++.+.
T Consensus 367 ~~~~~~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de--------------------------- 419 (587)
T KOG1864|consen 367 WTNKGHHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDE--------------------------- 419 (587)
T ss_pred ccccccccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccc---------------------------
Confidence 034678999999999999 99999999999999999997531
Q ss_pred cccCCCCCHHHHHHhhcCCcccCc---ccccccCccccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCc
Q 003533 513 EIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDI 588 (812)
Q Consensus 513 ~~~~~~~sL~dcL~~f~~~E~l~~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~ 588 (812)
..++..||..|..+|.+.| |+|++|...+.|.|+..++.+|.+|+||||||.++.. ....|+...|.+|.+
T Consensus 420 -----~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~ple 494 (587)
T KOG1864|consen 420 -----NTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLE 494 (587)
T ss_pred -----cccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccc
Confidence 1589999999999999986 9999999999999999999999999999999999842 234699999999999
Q ss_pred ccccccccCCCCCCCccCCCCCCCCcccCCCCcCCHHHHHHHHhCCCCHHH
Q 003533 589 IDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLH 639 (812)
Q Consensus 589 LDLs~y~~~g~~~gE~~lpe~~~~~~~~~~~~~~~~~~v~~L~~MGF~~~~ 639 (812)
|.+......+..+ ..-..+++.++++|-+.++
T Consensus 495 l~l~~~~~~~~~~-------------------~~~Y~L~avVvH~G~~p~~ 526 (587)
T KOG1864|consen 495 LRLKDTLKDDNNP-------------------DRKYDLVAVVVHLGSTPNR 526 (587)
T ss_pred eeeccccccccCc-------------------cceeeEEEEEEeccCCCCC
Confidence 9988666554332 1134456667777765553
No 37
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.65 E-value=5.3e-17 Score=134.48 Aligned_cols=61 Identities=52% Similarity=0.963 Sum_probs=52.0
Q ss_pred ccccCCC-CCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeecccccCCCCceEEeccCCCCCCch
Q 003533 184 CAKCDKR-DNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDP 257 (812)
Q Consensus 184 C~~C~~~-~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~~v~dp 257 (812)
|+.|+.. .++|+||+||++||||++ ++||+.||++++|+++|++. +..||||.||++|.||
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~------~~Ha~~H~~~~~H~l~v~~~-------~~~i~C~~C~~~v~~~ 62 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYS------NGHALKHYKETGHPLAVSLS-------TGSIWCYACDDYVYDP 62 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTS------TSHHHHHHHHHT--EEEETT-------TTCEEETTTTEEEEST
T ss_pred CCCCCCcCCceEEeCCCCcccccCCc------CcHHHHhhcccCCeEEEECC-------CCeEEEcCCCcEEeCC
Confidence 7888877 899999999999999873 58999999999999999984 6789999999999986
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.4e-17 Score=177.63 Aligned_cols=231 Identities=19% Similarity=0.228 Sum_probs=167.6
Q ss_pred cccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhc
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~ 389 (812)
-++|+.|+|||||||+.+|+|..+|+++..+....-..... ........+...|+.+|+.|.++
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~--~t~~~a~~i~~~mR~~f~~~~~~-------------- 167 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRG--DTWERRRRISIETRTCFRPLCEK-------------- 167 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCC--chhhhhhhHHHHHHHHHHhhhcc--------------
Confidence 35799999999999999999999999988876432101000 00011345677888888877652
Q ss_pred ccccCCCCCCCCCchhHHHHHHhhCCCCCc------ccccchHHHHHHHHHHHHHHhcCCCC-----CCCccceeeEEEE
Q 003533 390 AATTTDTKQEGIPPRMFKAVIAASHPEFSS------MRQQDALEFFLHFVDQVERVHSGKPE-----VDPTKSFKFGIEE 458 (812)
Q Consensus 390 ~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~------~~QQDA~EFL~~LLd~L~~~~~~~~~-----~~i~~~F~g~l~~ 458 (812)
..+.|..+...+.+-.|.|.- +.||||.|.+..++-.+++.+..... ..+...|++.++.
T Consensus 168 ---------~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~ 238 (473)
T KOG1872|consen 168 ---------GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFST 238 (473)
T ss_pred ---------CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhcccccc
Confidence 588999999999999999887 89999999999999999988764332 2367789999999
Q ss_pred EEEe-CCCCeeee--eccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcCCcccC
Q 003533 459 RISC-PSGKVAYN--RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP 535 (812)
Q Consensus 459 ~i~C-~C~~vs~~--~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~ 535 (812)
++.| +....... .+.|..|+.-|...- + .+..-|..=+. |.+.
T Consensus 239 t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~--~-------------------------------~~k~Gl~~~~~-e~~~ 284 (473)
T KOG1872|consen 239 TMSCSEGEDEGGGAGRELVDQLKCIINKTV--H-------------------------------DMRFGLKSGLS-EEIQ 284 (473)
T ss_pred ceeeccCcccccccccccccccceEEeeee--c-------------------------------hhhhhhhhhhh-hhhh
Confidence 9999 77665555 455555555543221 1 12222222221 2333
Q ss_pred cccccccCccccceEEEEecccCCceEEEeeeEEEcCC-cceeccceeeecCCcccccccccCCCC
Q 003533 536 DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQ 600 (812)
Q Consensus 536 ~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~g~~ 600 (812)
-..+..|......|...|.+||.||.||.-||.+... .+..|+-..|.||..||.-.++++.++
T Consensus 285 -K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~ 349 (473)
T KOG1872|consen 285 -KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELK 349 (473)
T ss_pred -ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhh
Confidence 3556667777788999999999999999999999754 344499999999999999999998554
No 39
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.61 E-value=1.3e-15 Score=159.39 Aligned_cols=118 Identities=20% Similarity=0.292 Sum_probs=86.8
Q ss_pred cccchHHHHHHHHHHHHHHhcCCCCCCCccceeeEEEEEEEeCCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHH
Q 003533 421 RQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKM 500 (812)
Q Consensus 421 ~QQDA~EFL~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~ 500 (812)
+|||+.||+..|+++|..-+- +..-++|.|.....-. . +......|+|+||....
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~----~~~~~~~~~g~~~~~~----~---~~~~e~~l~l~ip~~~~-------------- 76 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL----EPKVDIIHGGKKDQDD----D---KLVNERLLQIPVPDDDD-------------- 76 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh----hHHHHHHhcCcccccc----c---cccccceEEeecccCCC--------------
Confidence 389999999999999886432 1234566553211100 0 22234456777764321
Q ss_pred hhhccCCCCCcccccCCCCCHHHHHHhhcCCcccCcccccccCccccceEEEEecccCCceEEEeeeEEEcCCcceeccc
Q 003533 501 ERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLD 580 (812)
Q Consensus 501 ~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~l~~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~ 580 (812)
.+.+||++||+.|+..|. |.++|++|+||||||.++. +...|++
T Consensus 77 ---------------~~~~tLedcLe~~~~~e~--------------------i~~lP~vLiIhLKRF~~~~-~~~~Kl~ 120 (241)
T cd02670 77 ---------------GGGITLEQCLEQYFNNSV--------------------FAKAPSCLIICLKRYGKTE-GKAQKMF 120 (241)
T ss_pred ---------------CCcCCHHHHHHHHhchhh--------------------hhhCCCeEEEEEEccccCC-CcceeCC
Confidence 123799999999999886 8999999999999999985 7788999
Q ss_pred eeeecCCcccccccccCCC
Q 003533 581 VYIDVPDIIDISHMRSKGL 599 (812)
Q Consensus 581 ~~V~fP~~LDLs~y~~~g~ 599 (812)
+.|.||..|||.+|+....
T Consensus 121 ~~I~fP~~Ldl~~~~~~~~ 139 (241)
T cd02670 121 KKILIPDEIDIPDFVADDP 139 (241)
T ss_pred cEECCCCcCCchhhccccc
Confidence 9999999999999987643
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.56 E-value=9.2e-16 Score=165.28 Aligned_cols=105 Identities=25% Similarity=0.419 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHh--hccHHHHHHHHhhhhccCCCCcccccccccCCCccCCCCCCcccccCCCCCeEEEeeeCcccccCc
Q 003533 130 EKVRLAVDAILM--AEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRR 207 (812)
Q Consensus 130 ~~~~~~~~~i~~--~~s~~~~~~~~~w~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~ 207 (812)
|++...+.+|+. ..-+.+.+++..|....+++|+|+.. +.. .....|..|+.+.|||+||.||++|||||
T Consensus 183 ERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~----p~~----ve~~~c~~c~~~~~LwicliCg~vgcgrY 254 (493)
T KOG0804|consen 183 ERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS----PSV----VESSLCLACGCTEDLWICLICGNVGCGRY 254 (493)
T ss_pred hhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC----cch----hhhhhhhhhcccccEEEEEEccceecccc
Confidence 556666766664 33377888999999888999999753 211 12368999999999999999999999999
Q ss_pred cCCCCCCCchhhhHhhhcCCceeEeecccccCCCCceEEeccCCCCCC
Q 003533 208 NWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVV 255 (812)
Q Consensus 208 ~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~~v~ 255 (812)
.- +||.+||++|+|++++.|+ +..||.|+-|.||.
T Consensus 255 ~e------ghA~rHweet~H~yalel~-------tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 255 KE------GHARRHWEETGHCYALELE-------TQRVWDYAGDNYVH 289 (493)
T ss_pred cc------hhHHHHHHhhcceEEEeec-------ceeeeecccchhhh
Confidence 55 8999999999999999995 89999999999993
No 41
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7e-15 Score=165.15 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCceeEEEE
Q 003533 679 AAIDQSKVETLLSFGFSEEVARNALKAS-GGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHI 757 (812)
Q Consensus 679 ~~~~~~~i~~L~~mGf~~~~a~~AL~~~-~~~~e~A~~wl~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~a~ 757 (812)
+..++.+|.+|++|||+.++|++||..| |.+.|.|++||+.||||+|.+ .|...+.. .+..+++...-+.++.
T Consensus 568 ~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~-~p~vvp~~-----~~~a~~~~~~e~~v~s 641 (763)
T KOG0944|consen 568 FAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDID-DPFVVPGN-----SPKADAREVDEESVAS 641 (763)
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccC-CceecCCC-----CCccccCCCChhHhee
Confidence 4588999999999999999999999999 556999999999999999997 33322111 1111122333456999
Q ss_pred EeecCCChhhHHHHHHhhhcchhhhhHHHHHHH
Q 003533 758 LAYFIPNLYMLSVLHASFANNHCEILDYVLTIL 790 (812)
Q Consensus 758 I~H~G~s~~~a~~~~~~~~~~~~~~~~~~~~~~ 790 (812)
|+.||++.+||..++.+++||++||+||+|+-.
T Consensus 642 i~smGf~~~qa~~aL~~~n~nveravDWif~h~ 674 (763)
T KOG0944|consen 642 IVSMGFSRNQAIKALKATNNNVERAVDWIFSHM 674 (763)
T ss_pred eeeecCcHHHHHHHHHhcCccHHHHHHHHHhcc
Confidence 999999999999999999999999999999843
No 42
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.6e-13 Score=145.15 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=83.8
Q ss_pred CccccccCCCCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 003533 672 LSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGG-DIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGG 750 (812)
Q Consensus 672 ~~~~~~~~~~~~~~i~~L~~mGf~~~~a~~AL~~~~~-~~e~A~~wl~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (812)
+|.....+..+..+|.+|.+|||+..+|.+||..|+| |.|.|++|||.||||+|.+ .|..+++- -+.+....+.
T Consensus 548 LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdln-dP~~~~~~-vPKkDkeVdE--- 622 (749)
T COG5207 548 LPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLN-DPFVPPPN-VPKKDKEVDE--- 622 (749)
T ss_pred CCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccC-CCCCCCCC-CCcccccccH---
Confidence 3555555778899999999999999999999999955 6999999999999999987 44333110 0001111111
Q ss_pred ceeEEEEEeecCCChhhHHHHHHhhhcchhhhhHHHHH
Q 003533 751 SKFLKHILAYFIPNLYMLSVLHASFANNHCEILDYVLT 788 (812)
Q Consensus 751 ~y~L~a~I~H~G~s~~~a~~~~~~~~~~~~~~~~~~~~ 788 (812)
-. .--++.||+++++|..++..-+++.+|+++|+|-
T Consensus 623 -~~-~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N 658 (749)
T COG5207 623 -SK-ARSLLENGLNPNLCRKALMDMNTDSKRRVVWCIN 658 (749)
T ss_pred -HH-HHHHHHcCCCHHHHHHHHHHccCCchheEEEEEe
Confidence 01 2236889999999999999999999999999875
No 43
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=6.1e-13 Score=143.31 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=119.9
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCCC------CCC------CCC--ccccccCCCCHHH
Q 003533 620 PVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDP------DID------MPL--SQETQCAAIDQSK 685 (812)
Q Consensus 620 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~------~~~------~p~--~~~~~~~~~~~~~ 685 (812)
..++.+.++.|++|||.+..||+|||.+++ +++.|+.||.++.+.- +.. +.. ..+.....+++.+
T Consensus 300 lki~d~~lsllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~~~r~k~~n~~~~~wvn~rs 378 (568)
T KOG2561|consen 300 LKINDETLSLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREILERKKYGNTPMKKWVNPRS 378 (568)
T ss_pred eeccchHHHHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcccccCHHH
Confidence 457788999999999999999999999998 9999999999875321 000 000 2233446789999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCceeEEEEEeecCCCh
Q 003533 686 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGSKFLKHILAYFIPNL 765 (812)
Q Consensus 686 i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~a~I~H~G~s~ 765 (812)
+..|++|||.+..|..||+.++||+..|+|.|..+.|++... .|. .|..-++ ..++-+.||||+.
T Consensus 379 ~~rL~~mGyer~la~eaL~r~~Ndi~~aldllq~esdel~~n-~~~----------~p~~vd~----~~la~Lv~mGF~e 443 (568)
T KOG2561|consen 379 LERLVSMGYERELAAEALRRNENDIQKALDLLQDESDELESN-KPK----------RPEQVDG----ISLAELVSMGFEE 443 (568)
T ss_pred HHHHHhcchHhHHHHHHHHhccCcHHHHHHhcCCcchhhhcc-CCC----------CCcccch----hhHHHHHHhcccc
Confidence 999999999999999999999999999999888887775543 110 0110111 2367789999999
Q ss_pred hhHHHHHHhhhcchhhhhHHHHHH
Q 003533 766 YMLSVLHASFANNHCEILDYVLTI 789 (812)
Q Consensus 766 ~~a~~~~~~~~~~~~~~~~~~~~~ 789 (812)
.-|.-|+..+.|+...|...+..-
T Consensus 444 ~~A~~ALe~~gnn~~~a~~~L~~s 467 (568)
T KOG2561|consen 444 GKARSALEAGGNNEDTAQRLLSAS 467 (568)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHh
Confidence 999999999999999988765443
No 44
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1.1e-10 Score=129.39 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=39.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 682 DQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
+.++|++|++|||++..|.+|+.+|+.|.|.|++|||++..|
T Consensus 337 E~~AIeRL~~LGF~r~~viqaY~ACdKNEelAAn~Lf~~~~~ 378 (378)
T TIGR00601 337 EKEAIERLCALGFDRGLVIQAYFACDKNEELAANYLLSQNFD 378 (378)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHhhcCC
Confidence 358899999999999999999999999999999999998764
No 45
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.10 E-value=2.9e-10 Score=119.65 Aligned_cols=100 Identities=22% Similarity=0.366 Sum_probs=80.0
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCCC----------CCCC-------CC---cc----ccc
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDP----------DIDM-------PL---SQ----ETQ 677 (812)
Q Consensus 622 ~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~----------~~~~-------p~---~~----~~~ 677 (812)
..+..|.+||+|||.++...||||+..| |+|+|++||+..+-+. .... |+ |. .++
T Consensus 134 ~~e~~V~~Im~MGy~re~V~~AlRAafN-NPeRAVEYLl~GIP~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~ 212 (340)
T KOG0011|consen 134 EYEQTVQQIMEMGYDREEVERALRAAFN-NPERAVEYLLNGIPEDAEVPEPEKSTAAAAELPANAQPLDLFPQGAVEASG 212 (340)
T ss_pred hhHHHHHHHHHhCccHHHHHHHHHHhhC-ChhhhHHHHhcCCcccccCCcccCCcccCCCCCCCCChhhcCCccchhhhc
Confidence 6788999999999999999999999999 9999999999886320 0000 00 00 000
Q ss_pred c-------------------------------------------------------------------------------
Q 003533 678 C------------------------------------------------------------------------------- 678 (812)
Q Consensus 678 ~------------------------------------------------------------------------------- 678 (812)
+
T Consensus 213 ~~~l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I 292 (340)
T KOG0011|consen 213 GDPLEFLRNQPQFQQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQI 292 (340)
T ss_pred CCchhhhhccHHHHHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCcceE
Confidence 0
Q ss_pred --CCCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 003533 679 --AAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722 (812)
Q Consensus 679 --~~~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~d 722 (812)
+..+.++|++|.+|||+|..+.+|+.+|+.|.|.|++|||+|+.
T Consensus 293 ~vtpee~eAIeRL~alGF~ralViqayfACdKNEelAAN~Ll~~~f 338 (340)
T KOG0011|consen 293 QVTPEEKEAIERLEALGFPRALVIQAYFACDKNEELAANYLLSHSF 338 (340)
T ss_pred ecCHHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHHHHHHHHhhcc
Confidence 01235899999999999999999999999999999999999983
No 46
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.07 E-value=1.2e-10 Score=91.98 Aligned_cols=48 Identities=54% Similarity=0.989 Sum_probs=43.3
Q ss_pred cccccCCCCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeeccc
Q 003533 183 KCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTI 236 (812)
Q Consensus 183 ~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgti 236 (812)
+|..|....++|+||+||++||||+. ++|++.|+++++|++++++.+.
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~------~~h~~~H~~~t~H~~~~~~~~~ 48 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQ------LGHALEHFEETGHPLVVKLGTQ 48 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCC------CcHHHHHhhhhCCCEEEEcccc
Confidence 59999988899999999999999973 4799999999999999998643
No 47
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.86 E-value=2.5e-09 Score=78.75 Aligned_cols=37 Identities=51% Similarity=0.973 Sum_probs=34.1
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHH
Q 003533 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWI 717 (812)
Q Consensus 681 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl 717 (812)
++++.|.+|++|||++++|++||+.++||+++|++||
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 3578999999999999999999999999999999997
No 48
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.81 E-value=2e-08 Score=109.07 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=83.7
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCCCCCCCCCccccccCCCCHHHHHHHHhcCCCHHHHHH
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARN 701 (812)
Q Consensus 622 ~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~~~~~p~~~~~~~~~~~~~~i~~L~~mGf~~~~a~~ 701 (812)
+|+..|..|++|||.+..|..||+.+.| ++..|++-|..+-++-.-+.|- ...+++...+.+|+.|||++..|+.
T Consensus 374 vn~rs~~rL~~mGyer~la~eaL~r~~N-di~~aldllq~esdel~~n~~~----~p~~vd~~~la~Lv~mGF~e~~A~~ 448 (568)
T KOG2561|consen 374 VNPRSLERLVSMGYERELAAEALRRNEN-DIQKALDLLQDESDELESNKPK----RPEQVDGISLAELVSMGFEEGKARS 448 (568)
T ss_pred cCHHHHHHHHhcchHhHHHHHHHHhccC-cHHHHHHhcCCcchhhhccCCC----CCcccchhhHHHHHHhccccchHHH
Confidence 7999999999999999999999999999 9999999887764432222221 1235789999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCCC
Q 003533 702 ALKASGGDIEKATDWIFNNPDASTS 726 (812)
Q Consensus 702 AL~~~~~~~e~A~~wl~~~~dd~~~ 726 (812)
||+.++||++.|...|..+...++.
T Consensus 449 ALe~~gnn~~~a~~~L~~s~~n~~~ 473 (568)
T KOG2561|consen 449 ALEAGGNNEDTAQRLLSASVANEGE 473 (568)
T ss_pred HHHhcCCcHHHHHHHHHHhCCCCcc
Confidence 9999999999999999877665444
No 49
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.76 E-value=8.4e-09 Score=75.99 Aligned_cols=37 Identities=32% Similarity=0.605 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWL 659 (812)
Q Consensus 622 ~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl 659 (812)
+|++.|++|++|||+++.|++||++++| |++.|++||
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 4789999999999999999999999999 999999997
No 50
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.72 E-value=2.1e-08 Score=74.33 Aligned_cols=38 Identities=45% Similarity=0.887 Sum_probs=35.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 682 DQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
+++.|++|++|||++++|+.||+.++||+++|++|||+
T Consensus 1 ~~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 1 DEEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 36789999999999999999999999999999999985
No 51
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.71 E-value=2.2e-08 Score=73.77 Aligned_cols=37 Identities=41% Similarity=0.812 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF 718 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~ 718 (812)
+++.|++|++|||++++|+.||+.++||+++|++|||
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 3678999999999999999999999999999999997
No 52
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.55 E-value=1.1e-07 Score=69.94 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=34.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHh
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLL 660 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~ 660 (812)
+++.|++|++|||++++|++||+.++| |++.|++||+
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 467899999999999999999999999 8999999995
No 53
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.53 E-value=1.5e-07 Score=69.64 Aligned_cols=38 Identities=39% Similarity=0.676 Sum_probs=35.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
+++.|++|++|||++.+|++||+.++| |++.|++||++
T Consensus 1 ~~~~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~~ 38 (38)
T cd00194 1 DEEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE 38 (38)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence 467899999999999999999999999 99999999974
No 54
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=3.7e-06 Score=98.50 Aligned_cols=254 Identities=15% Similarity=0.054 Sum_probs=152.4
Q ss_pred CcccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhh---
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKD--- 385 (812)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~--- 385 (812)
..+.||.--+-.=|-|++||+|..+|++|...+... ..-..|+.|+|.-||+.|-+..-..-.....
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~----------C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlra 566 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI----------CTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRA 566 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc----------cchhHHHHHHHHHHHHHHhhhcCCccchhHHHHH
Confidence 356788888888899999999999999999998532 1244689999999999887643221100000
Q ss_pred -hhhcccc----cCCCCC-CCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHHHhcC--CCCCCCccceeeEEE
Q 003533 386 -AAANAAT----TTDTKQ-EGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSG--KPEVDPTKSFKFGIE 457 (812)
Q Consensus 386 -~~~~~~~----~~~~~~-~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~--~~~~~i~~~F~g~l~ 457 (812)
....++. ....++ .+--+..+...=+.+..--.+.+-+|-++|.............. .....+.++|.-.++
T Consensus 567 f~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e 646 (1118)
T KOG1275|consen 567 FRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIE 646 (1118)
T ss_pred HhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHH
Confidence 0000000 000111 01111111110011001111235566666666555443332211 112467889999999
Q ss_pred EEEEe-CCCCeeeeeccceeEEeecCCcccccHHHHHHHHHHHHhhhccCCCCCcccccCCCCCHHHHHHhhcC-CcccC
Q 003533 458 ERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSA-PEELP 535 (812)
Q Consensus 458 ~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~-~E~l~ 535 (812)
.+..| .|+..+.+......+.|..|....... ....-.+...|++-.. .+.+.
T Consensus 647 ~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~-------------------------~~~~~~F~~iL~R~l~l~kn~~ 701 (1118)
T KOG1275|consen 647 KSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDT-------------------------LAKSNNFVEILKRSLSLFKNKQ 701 (1118)
T ss_pred HhhhcccccchhhhhhhhhheeecCCCccchhh-------------------------cccccchHHHhhhhhhcccccc
Confidence 99999 999988887777777777765332110 0001244455554322 22233
Q ss_pred cccccccCccccceEEEEecccCCceEEEeeeEEEcC-Ccce--eccceeeecCCcccccccccCC
Q 003533 536 DFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA-GWVP--KKLDVYIDVPDIIDISHMRSKG 598 (812)
Q Consensus 536 ~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~-~~~~--~Ki~~~V~fP~~LDLs~y~~~g 598 (812)
-.|+.|++......+..++++|++|.|...-+.... +|-. .|.-..|-+|+.+-|..-..++
T Consensus 702 -~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~ 766 (1118)
T KOG1275|consen 702 -AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKA 766 (1118)
T ss_pred -cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccc
Confidence 689999999999999999999999999999887652 3322 2677888899988777665443
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00014 Score=81.13 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=39.8
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 681 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
..+..|+.|++|||+|+++++||++.-||.||||+||++..-+
T Consensus 155 ~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGIP~ 197 (378)
T TIGR00601 155 ERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGIPE 197 (378)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999999998653
No 56
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=97.31 E-value=0.00019 Score=56.50 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.6
Q ss_pred CcEEecccccccC----cchhhhhhhccCCcEEEEEEEE
Q 003533 40 GLFVDLNSFLAYG----KDHVGWNFEKTGNPVYLHIKQT 74 (812)
Q Consensus 40 gl~vcl~~f~~~~----~~h~~~h~~~~~~~~~l~i~~~ 74 (812)
.|+|||.|+..+| ..|+..|++.++|++|+++++.
T Consensus 10 ~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~ 48 (50)
T smart00290 10 NLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQ 48 (50)
T ss_pred CeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEcccc
Confidence 4999999999876 5799999999999999999765
No 57
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=96.63 E-value=0.0033 Score=67.31 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 680 AIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 680 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
...+..|.++++|||+++++.+||++.-||.||||+||++...+
T Consensus 133 ~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 133 SEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPE 176 (340)
T ss_pred chhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence 45788999999999999999999999999999999999997554
No 58
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0031 Score=74.30 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=62.6
Q ss_pred cccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhc---cCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhcc
Q 003533 314 LVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFE---AAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANA 390 (812)
Q Consensus 314 L~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~---~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~~ 390 (812)
|+|.|||||.||+||+|.++|+|+.++.......+... .+...+.....+....+-.-+.. ++.- +
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~--- 102 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLN--FSKN------S--- 102 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHh--hhcc------C---
Confidence 99999999999999999999999988764211011000 01111112111222111111111 0100 0
Q ss_pred cccCCCCCCCCCchhHHHHH---HhhCCCCCcccccchHHHHHHHHHHHHHHhcC
Q 003533 391 ATTTDTKQEGIPPRMFKAVI---AASHPEFSSMRQQDALEFFLHFVDQVERVHSG 442 (812)
Q Consensus 391 ~~~~~~~~~~IsP~~f~~~i---~~~~~~F~~~~QQDA~EFL~~LLd~L~~~~~~ 442 (812)
......-++-..+.... ++...+|....|+||++|+.-|+-.+......
T Consensus 103 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 103 ---SSNESFNLSVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred ---CccccccchHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 00011112222322222 44566799999999999999999998877653
No 59
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0083 Score=62.59 Aligned_cols=41 Identities=39% Similarity=0.665 Sum_probs=38.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHH-hcCCCCCC
Q 003533 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWL-LSHMDDPD 667 (812)
Q Consensus 627 v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl-~~~~~d~~ 667 (812)
+++|++|||+...+-+||.-++|.+++.||.|| ++|.+||.
T Consensus 4 ~~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~ 45 (290)
T KOG2689|consen 4 AQSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI 45 (290)
T ss_pred HHHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc
Confidence 389999999999999999999999999999999 88888876
No 60
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=94.87 E-value=0.057 Score=41.06 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=31.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 684 SKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 684 ~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
+.|.+.+++ |.+++.|+.-|..+++|+++|++-.|.+.++
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 456666665 8999999999999999999999999987664
No 61
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=94.56 E-value=0.019 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCcEEecccccccCc----chhhhhhhccCCcEEEEE
Q 003533 38 EGGLFVDLNSFLAYGK----DHVGWNFEKTGNPVYLHI 71 (812)
Q Consensus 38 ~~gl~vcl~~f~~~~~----~h~~~h~~~~~~~~~l~i 71 (812)
...|+|||.|..-+|- .|+..|+++++|++++++
T Consensus 8 ~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~ 45 (63)
T PF02148_consen 8 NSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSL 45 (63)
T ss_dssp SSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEET
T ss_pred CCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEEC
Confidence 3679999999766543 699999999999999965
No 62
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=94.38 E-value=0.088 Score=39.78 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=33.2
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 683 QSKVETLLSF--GFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 683 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
++.|.+|.+| .++++..+.+|++++||+|+|++-|++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5678999999 899999999999999999999999875
No 63
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.1 Score=54.74 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=35.4
Q ss_pred HHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHH-hcCCCCCCC
Q 003533 687 ETLLSFGFSEEVARNALKAS-GGDIEKATDWI-FNNPDASTS 726 (812)
Q Consensus 687 ~~L~~mGf~~~~a~~AL~~~-~~~~e~A~~wl-~~~~dd~~~ 726 (812)
++|++|||+...+.+||..+ +.++|.|++|| .+|.+|+..
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~~ 46 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPID 46 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCcc
Confidence 89999999999999999998 56699999999 788777653
No 64
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=92.42 E-value=0.31 Score=36.97 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=33.8
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 682 DQSKVETLLSF--GFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 682 ~~~~i~~L~~m--Gf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
..+.+.+|.+| .+++..++..|++.+||+|.|++-|++
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35788999999 678899999999999999999998875
No 65
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=89.47 E-value=0.34 Score=38.66 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 003533 621 VANKDIVSQLVSMGFNHLHCEKAAVNTSN 649 (812)
Q Consensus 621 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~n 649 (812)
-+|.+.|.++++|||++.....||+.-|=
T Consensus 7 Gi~~~lVd~F~~mGF~~dkVvevlrrlgi 35 (55)
T PF09288_consen 7 GIDKDLVDQFENMGFERDKVVEVLRRLGI 35 (55)
T ss_dssp --SHHHHHHHHHHT--HHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 47999999999999999999999998764
No 66
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=0.44 Score=47.31 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 680 AIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 680 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
..+...|..|.+|||++..+..+|...+.|.++|.+.+|+
T Consensus 160 ~~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s 199 (200)
T KOG0418|consen 160 PWDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLS 199 (200)
T ss_pred chhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhcc
Confidence 3567899999999999999999999999999999998876
No 67
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=88.86 E-value=0.64 Score=47.61 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcC
Q 003533 681 IDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNN 720 (812)
Q Consensus 681 ~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~ 720 (812)
++.+.|..|.++ |.+--.|++||..++||++.|++||-..
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 456788888877 9999999999999999999999999875
No 68
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=88.30 E-value=0.48 Score=37.82 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhC
Q 003533 681 IDQSKVETLLSFGFSEEVARNALKASG 707 (812)
Q Consensus 681 ~~~~~i~~L~~mGf~~~~a~~AL~~~~ 707 (812)
.+++.|.++++|||+++.+..||+.-+
T Consensus 8 i~~~lVd~F~~mGF~~dkVvevlrrlg 34 (55)
T PF09288_consen 8 IDKDLVDQFENMGFERDKVVEVLRRLG 34 (55)
T ss_dssp -SHHHHHHHHHHT--HHHHHHHHHHS-
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 578999999999999999999999863
No 69
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=88.07 E-value=0.69 Score=50.10 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 003533 681 IDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNNP 721 (812)
Q Consensus 681 ~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~~ 721 (812)
++.+.|..|.++ |.+--.|++||..++||+|.|++||....
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 566788888888 99999999999999999999999998753
No 70
>PRK09377 tsf elongation factor Ts; Provisional
Probab=87.75 E-value=0.76 Score=49.81 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcC
Q 003533 681 IDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNN 720 (812)
Q Consensus 681 ~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~ 720 (812)
++...|..|.++ |.+--.|++||..++||+|.|++||...
T Consensus 4 is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 4 ITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred cCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567788888887 9999999999999999999999999875
No 71
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=86.71 E-value=1.5 Score=33.13 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.4
Q ss_pred CHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHhcC
Q 003533 623 NKDIVSQLVSMGFN---HLHCEKAAVNTSNAGVEEAMNWLLSH 662 (812)
Q Consensus 623 ~~~~v~~L~~MGF~---~~~a~~AL~~t~n~~~e~A~~wl~~~ 662 (812)
+++.+.+|.+| || ...++++|.+.+| +++.|++-|++.
T Consensus 2 ~~~~v~~L~~m-FP~l~~~~I~~~L~~~~g-~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDM-FPNLDEEVIKAVLEANNG-NVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence 46789999999 76 6788889998777 999999988753
No 72
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=86.53 E-value=1.3 Score=41.01 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 680 AIDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 680 ~~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
.++++.|..+++- |-+++.|++||..++||+-.|+-+|-+
T Consensus 74 ~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 74 EIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 4678889888765 999999999999999999999988754
No 73
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=86.27 E-value=0.69 Score=45.96 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=20.5
Q ss_pred cccccccCCCcchhhHHHHHhh--cChhHHHHhc
Q 003533 310 GYTGLVNLGNSCYLAATMQVMF--STHAFCTRYY 341 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~--~ip~f~~~~l 341 (812)
.++|+.|.+|+|++||++|.+. ..|-|-.+|.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 3579999999999999999875 4454555553
No 74
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=86.07 E-value=0.75 Score=44.70 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=34.5
Q ss_pred cccccCC--CCCeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCce-eEeecccccCCCCceEEeccCCC
Q 003533 183 KCAKCDK--RDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPL-AVKLGTITSDLEGADVFSYPEDD 252 (812)
Q Consensus 183 ~C~~C~~--~~~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~-~v~lgtit~~~~~~~vycy~cd~ 252 (812)
.|.-|+. ...+-.|++|+.-+|-.+ |.+..+|.+.|...++|.- .+.=. + ..+.-.+.||.|..
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~---~~~s~SHIv~HLv~srh~ev~LH~~--s-~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGR---GNTSGSHIVNHLVRSRHKEVSLHPD--S-PLGDTVLECYNCGS 68 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES-----TTSSS-HHHHHHHHHT---EEE-TT--S-TT-S-B---TTT--
T ss_pred CccccCCCCcccEeEcCCCCcEeecCC---CCCcccHHHHHHHHccCCceeeCCC--C-CCCCcEEEEEecCC
Confidence 4888884 467999999999999544 3446789999999998853 32211 0 01245799999963
No 75
>CHL00098 tsf elongation factor Ts
Probab=86.04 E-value=1.1 Score=45.97 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=33.3
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcC
Q 003533 683 QSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNN 720 (812)
Q Consensus 683 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~ 720 (812)
.+.|..|.++ |.+--.|++||..++||++.|++||...
T Consensus 2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3567777776 8999999999999999999999999885
No 76
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=1 Score=44.77 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=34.6
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 622 ~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
.+...|..|.+|||+++.+..+|...+. +.+.|.+.+++
T Consensus 161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w-~~~~a~~~~~s 199 (200)
T KOG0418|consen 161 WDKKKVDSLIEMGFSELEAILVLSGSDW-NLADATEQLLS 199 (200)
T ss_pred hhHHHHHHHHHhcccHHHHHHHhhcccc-chhhhhHhhcc
Confidence 5788999999999999999999999887 88888887764
No 77
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=84.37 E-value=1.8 Score=40.15 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHH
Q 003533 680 AIDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWI 717 (812)
Q Consensus 680 ~~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl 717 (812)
.++++.|..+++- |-+++.|++||.+++||+-.|+-+|
T Consensus 76 ~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L 114 (116)
T TIGR00264 76 EITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114 (116)
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3678888887765 9999999999999999999998776
No 78
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=80.65 E-value=3.9 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCCC
Q 003533 625 DIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDD 665 (812)
Q Consensus 625 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d 665 (812)
+.|++.++ .|.++..|+.-|..+++ |++.|++-.++..++
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNW-DLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT--HHHHHHHHHHSS-S
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 34444444 58899999999999998 999999998887554
No 79
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=79.99 E-value=4.2 Score=30.61 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=30.8
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 624 KDIVSQLVSM--GFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 624 ~~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
++.|.+|.+| .++++..+.+|.+.++ ++|.|++.|++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~-~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNG-DVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTT-THHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHc
Confidence 5678888888 4678889999999888 99999999876
No 80
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=76.48 E-value=5.7 Score=30.78 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhC
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTS 648 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~ 648 (812)
-+++++.|+..||++..+.+|+....
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~ 28 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 36899999999999999999998873
No 81
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=76.33 E-value=1.9 Score=45.24 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=25.2
Q ss_pred ccCCCcchhhHHHHHhhcChhHHHHhcc
Q 003533 315 VNLGNSCYLAATMQVMFSTHAFCTRYYT 342 (812)
Q Consensus 315 ~NLGNTCYmNSVLQ~L~~ip~f~~~~l~ 342 (812)
+|--|-|++-++|-+|.|+..+++..-.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999999988754
No 82
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=75.28 E-value=4.7 Score=41.32 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=35.0
Q ss_pred CCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcC
Q 003533 622 ANKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662 (812)
Q Consensus 622 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~ 662 (812)
++.+.|..|-+ .|.+.-.|++||..++| |++.|++||...
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~g-d~~~A~~~lr~~ 43 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANG-DMEKAIEWLREK 43 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 46677888876 59999999999999998 999999999875
No 83
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=75.26 E-value=3.9 Score=46.75 Aligned_cols=37 Identities=38% Similarity=0.673 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 683 QSKVETLLSFGF-SEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 683 ~~~i~~L~~mGf-~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
..-+++|-+||| ++++..+||++|+||+.+||+-|+.
T Consensus 455 q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 455 QTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 356889999996 6889999999999999999998764
No 84
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=75.03 E-value=4.3 Score=44.09 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 003533 622 ANKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (812)
Q Consensus 622 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~ 663 (812)
+..+.|.+|-+ .|.+.-.|++||..++| |++.|++||.+..
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~g-DiekAi~~LRkkG 44 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANG-DFEKAIKNLRESG 44 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 45677888876 59999999999999998 9999999998764
No 85
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=74.56 E-value=4.7 Score=43.44 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcC
Q 003533 681 IDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNN 720 (812)
Q Consensus 681 ~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~ 720 (812)
.....|..|.++ |-.--.|++||..++||+|.|++||...
T Consensus 4 ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~k 44 (296)
T COG0264 4 ITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREK 44 (296)
T ss_pred ccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345566667666 7777889999999999999999999874
No 86
>PRK09377 tsf elongation factor Ts; Provisional
Probab=74.17 E-value=4.7 Score=43.78 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=35.8
Q ss_pred CCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 003533 622 ANKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (812)
Q Consensus 622 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~ 663 (812)
+..+.|.+|-+ .|.+.-.|++||..++| |.+.|++||.+..
T Consensus 4 is~~~IK~LR~~Tgagm~dCKkAL~e~~g-D~ekAi~~Lrk~G 45 (290)
T PRK09377 4 ITAALVKELRERTGAGMMDCKKALTEADG-DIEKAIEWLRKKG 45 (290)
T ss_pred cCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 56678888876 59999999999999998 9999999998763
No 87
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=73.67 E-value=4.2 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 683 QSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 683 ~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
+++++.|+++||++..+.+|+...
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578999999999999999999877
No 88
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=69.33 E-value=7.3 Score=30.08 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHh--cCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 680 AIDQSKVETLLS--FGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 680 ~~~~~~i~~L~~--mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
.+.++.|++... -|-+++..++-|+.|+-|++.|++-|+|.-|+
T Consensus 7 ~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDde 52 (53)
T PF11547_consen 7 QVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp GS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhccccC
Confidence 456677766544 49999999999999999999999999987443
No 89
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=68.87 E-value=9.1 Score=35.78 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHH
Q 003533 680 AIDQSKVETLLS-FGFSEEVARNALKASGGDIEKATDWI 717 (812)
Q Consensus 680 ~~~~~~i~~L~~-mGf~~~~a~~AL~~~~~~~e~A~~wl 717 (812)
.++++.|...++ -|-+++.|++||++++||+-.|+--|
T Consensus 82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 82 DISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence 467888887765 49999999999999999988887544
No 90
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.82 E-value=11 Score=45.28 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=69.9
Q ss_pred CCCHHHHHHhhcCCcccCc---ccccccCc---------------------------cccceEEEEecccCCceEEEeee
Q 003533 518 RVPLEACLSTFSAPEELPD---FYSTALKA---------------------------KTTATKSAGLTSFPDYLVLHMRK 567 (812)
Q Consensus 518 ~~sL~dcL~~f~~~E~l~~---y~C~~C~~---------------------------~~~a~K~~~i~~lP~vLiIhLkR 567 (812)
.++++.||..|+..|.+.| +.|+.|-+ .+.|.|+..|...|+||+|||||
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 4899999999999999986 89999954 12367899999999999999999
Q ss_pred EEEcCCcceeccceeeecCCcccccccccC
Q 003533 568 FVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 568 F~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
|..+......|++.+|.|++.+||.+|+..
T Consensus 757 f~q~~~~~~~k~~~h~~f~E~~dL~~~~~~ 786 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVDFKEFEDLLDYMDF 786 (877)
T ss_pred hhhhhhchhhcccccchHHHHHHHHHHhhh
Confidence 998755556799999999999999999865
No 91
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=67.33 E-value=7.1 Score=34.46 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=31.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhcCCCC
Q 003533 686 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (812)
Q Consensus 686 i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~~~dd 723 (812)
|..+.+.||+...+..||.+|.+++..|..++......
T Consensus 1 i~~~~~~g~~~~~v~~aL~~tSgd~~~a~~~vl~~l~~ 38 (87)
T PF11626_consen 1 IKHYEELGYSREFVTHALYATSGDPELARRFVLNFLQA 38 (87)
T ss_dssp -HHHHHHTB-HHHHHHHHHHTTTBHHHHHHHHHHCHCH
T ss_pred CchHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34578899999999999999999999999988887543
No 92
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=63.47 E-value=17 Score=33.92 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=34.5
Q ss_pred CcCCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 620 PVANKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 620 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
..++++-|..+++ -|-+++.|++||..++| |+-.|+-+|.+
T Consensus 73 ~~i~~edI~lv~~q~gvs~~~A~~AL~~~~g-Dl~~AI~~L~~ 114 (115)
T PRK06369 73 VEIPEEDIELVAEQTGVSEEEARKALEEANG-DLAEAILKLSS 114 (115)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHHcCC-cHHHHHHHHhc
Confidence 3467777777765 68999999999999999 99999998864
No 93
>CHL00098 tsf elongation factor Ts
Probab=62.91 E-value=7.5 Score=39.91 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=31.3
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcC
Q 003533 625 DIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662 (812)
Q Consensus 625 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~ 662 (812)
+.|.+|-+ .|.+...|++||..++| |++.|++||.+.
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~g-d~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANG-DFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 34556654 58999999999999999 999999999875
No 94
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=62.15 E-value=11 Score=43.23 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 624 KDIVSQLVSMGF-NHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 624 ~~~v~~L~~MGF-~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
..-++||-+||| ++++..+||++|++ |+.+|++-|+.
T Consensus 455 q~QLeQL~~MGF~nre~nlqAL~atgG-di~aAverll~ 492 (493)
T KOG0010|consen 455 QTQLEQLNDMGFLDREANLQALRATGG-DINAAVERLLG 492 (493)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcC-cHHHHHHHHhc
Confidence 446899999997 58888999999999 99999998763
No 95
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=61.26 E-value=3 Score=33.87 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.0
Q ss_pred CcccccCCCCCeEEEeeeCccc
Q 003533 182 WKCAKCDKRDNLWLNLTDGMIL 203 (812)
Q Consensus 182 ~~C~~C~~~~~lw~CL~Cg~~~ 203 (812)
|+|..|....|.|.|..||+.|
T Consensus 37 ~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eechhHHhcCCceECCCCCCcC
Confidence 7899999999999999999876
No 96
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=61.01 E-value=31 Score=32.35 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhc
Q 003533 680 AIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719 (812)
Q Consensus 680 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~~~e~A~~wl~~ 719 (812)
++..+.+.-+.+-|.+++.|++||..++ |.-+|+..|..
T Consensus 112 ~~~~e~v~v~a~a~v~~eeAr~aleeag-Dl~~A~k~l~~ 150 (153)
T COG4008 112 EPPVEEVEVLADAFVTPEEAREALEEAG-DLRTAMKILRM 150 (153)
T ss_pred CCcHHHHHHHHHhcCCHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 4667889999999999999999999888 99999987754
No 97
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=60.04 E-value=6.9 Score=45.24 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.7
Q ss_pred CCCCcEEecccc---cccC-cchhhhhhhccCCcEEEEE
Q 003533 37 SEGGLFVDLNSF---LAYG-KDHVGWNFEKTGNPVYLHI 71 (812)
Q Consensus 37 ~~~gl~vcl~~f---~~~~-~~h~~~h~~~~~~~~~l~i 71 (812)
+...+|.||.|. +|++ ..|+..|+..++|.++++.
T Consensus 24 ~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l 62 (440)
T cd02669 24 SNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNL 62 (440)
T ss_pred CCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEEC
Confidence 445689999995 5553 4699999999999999966
No 98
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=59.87 E-value=3.2 Score=33.65 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.3
Q ss_pred CcccccCCCCCeEEEeeeCccc
Q 003533 182 WKCAKCDKRDNLWLNLTDGMIL 203 (812)
Q Consensus 182 ~~C~~C~~~~~lw~CL~Cg~~~ 203 (812)
++|..|....|.|.|-.||+.|
T Consensus 39 ~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 39 YRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred ehhhhHHHcCCceECCCcCccC
Confidence 7899999999999999999976
No 99
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=57.48 E-value=13 Score=32.82 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhcCCC
Q 003533 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMD 664 (812)
Q Consensus 627 v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~~~ 664 (812)
|..+.+.||+...+..||++|.+ ++..|..|+.+...
T Consensus 1 i~~~~~~g~~~~~v~~aL~~tSg-d~~~a~~~vl~~l~ 37 (87)
T PF11626_consen 1 IKHYEELGYSREFVTHALYATSG-DPELARRFVLNFLQ 37 (87)
T ss_dssp -HHHHHHTB-HHHHHHHHHHTTT-BHHHHHHHHHHCHC
T ss_pred CchHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 34578899999999999999999 99999999988754
No 100
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=57.35 E-value=22 Score=33.16 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHh
Q 003533 622 ANKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLL 660 (812)
Q Consensus 622 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~ 660 (812)
++++-|..+++ -|-++..|++||..++| |+-.|+-+|.
T Consensus 77 i~~eDI~lV~eq~gvs~e~A~~AL~~~~g-Dl~~AI~~L~ 115 (116)
T TIGR00264 77 ITEDDIELVMKQCNVSKEEARRALEECGG-DLAEAIMKLE 115 (116)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHhh
Confidence 56677777665 68999999999999999 9999998875
No 101
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=55.83 E-value=11 Score=44.69 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=45.4
Q ss_pred CcccccCCCC--CeEEEeeeCcccccCccCCCCCCCchhhhHhhhcCCceeEeecccccCCCCceEEeccCCC
Q 003533 182 WKCAKCDKRD--NLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDD 252 (812)
Q Consensus 182 ~~C~~C~~~~--~lw~CL~Cg~~~Cgr~~~~g~~gn~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~ 252 (812)
..|.-|++.+ ++--|.+||.-+|-.+ +|+ ..+|...|...+.|.-+--.+ ....+...+-||.|..
T Consensus 61 ~~c~Ycgi~~p~~v~kc~~c~Kwfcn~r--~gt-sgshIv~hlvra~hk~v~lh~--ds~lget~lecyncg~ 128 (935)
T KOG1802|consen 61 HACAYCGISEPACVIKCNTCGKWFCNSR--GGT-SGSHIVNHLVRAKHKEVSLHK--DSPLGETVLECYNCGS 128 (935)
T ss_pred hhhhhccCCCchheeeccccCceeecCC--CCC-chhHHHHHHHHhhhheeEecc--CCCCCcceEEeeccCc
Confidence 5799999886 7888999999999543 233 346999999998886543221 0011234588888863
No 102
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=47.71 E-value=12 Score=40.68 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=19.6
Q ss_pred CCCceeEEEEEeecCCC---hhhHHHHHH
Q 003533 748 GGGSKFLKHILAYFIPN---LYMLSVLHA 773 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s---~~~a~~~~~ 773 (812)
++++|+|+|||+|.|.+ .|+-+++..
T Consensus 237 ~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~ 265 (305)
T cd02657 237 PSGYYELVAVITHQGRSADSGHYVAWVRR 265 (305)
T ss_pred CCCcEEEEEEEEecCCCCCCcEEEEEEEc
Confidence 56799999999999964 566555444
No 103
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=47.50 E-value=12 Score=41.16 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=18.7
Q ss_pred CCCceeEEEEEeecCCC---hhhHHHHH
Q 003533 748 GGGSKFLKHILAYFIPN---LYMLSVLH 772 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s---~~~a~~~~ 772 (812)
++.+|+|+|||+|.|.+ .|+-.++.
T Consensus 242 ~~~~Y~L~~vI~H~G~~~~~GHY~~~~k 269 (324)
T cd02668 242 GSYVYELSGVLIHQGVSAYSGHYIAHIK 269 (324)
T ss_pred CCcEEEEEEEEEEcCCCCCCEeeEEEEE
Confidence 46789999999999964 46544443
No 104
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=47.33 E-value=12 Score=40.83 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=15.2
Q ss_pred CCCceeEEEEEeecCCCh
Q 003533 748 GGGSKFLKHILAYFIPNL 765 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s~ 765 (812)
.+..|+|+|+|+|.|.++
T Consensus 248 ~~~~Y~L~~vI~H~G~~~ 265 (311)
T cd02658 248 GPGKYELIAFISHKGTSV 265 (311)
T ss_pred CCCcEEEEEEEEccCCCC
Confidence 456899999999999763
No 105
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=46.48 E-value=14 Score=40.80 Aligned_cols=26 Identities=4% Similarity=-0.275 Sum_probs=20.5
Q ss_pred CCCceeEEEEEeecCC---ChhhHHHHHH
Q 003533 748 GGGSKFLKHILAYFIP---NLYMLSVLHA 773 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~---s~~~a~~~~~ 773 (812)
.+..|+|.|||+|.|. +.|+-.++..
T Consensus 239 ~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~ 267 (327)
T cd02664 239 RQVHYRLYAVVVHSGYSSESGHYFTYARD 267 (327)
T ss_pred CCceEEEEEEEEEccCCCCCcceEEEEec
Confidence 4578999999999995 4777666554
No 106
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.96 E-value=16 Score=41.28 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCcEEecccccc-cCc---chhhhhhhccCCcEEEEEEEEEe
Q 003533 39 GGLFVDLNSFLA-YGK---DHVGWNFEKTGNPVYLHIKQTRK 76 (812)
Q Consensus 39 ~gl~vcl~~f~~-~~~---~h~~~h~~~~~~~~~l~i~~~~~ 76 (812)
..|-+||.|... |+| .|++.|++-|+|...|.+.-.+.
T Consensus 238 ~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrV 279 (493)
T KOG0804|consen 238 EDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRV 279 (493)
T ss_pred ccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceee
Confidence 359999999666 554 79999999999998887765554
No 107
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=41.31 E-value=38 Score=34.67 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 683 QSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 683 ~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
.+++..|+++||++.+|++|+..-
T Consensus 150 ~e~~~aL~~LGy~~~ea~~ai~~i 173 (195)
T PRK14604 150 RELSEILISLGYSAAEAAAAIAAL 173 (195)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999999876
No 108
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=39.92 E-value=20 Score=37.97 Aligned_cols=20 Identities=50% Similarity=0.777 Sum_probs=18.8
Q ss_pred ccccCCC-cchhhHHHHHhhc
Q 003533 313 GLVNLGN-SCYLAATMQVMFS 332 (812)
Q Consensus 313 GL~NLGN-TCYmNSVLQ~L~~ 332 (812)
|+.|.+| ||||-|.|=+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7899999 9999999999988
No 109
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=39.63 E-value=24 Score=36.33 Aligned_cols=20 Identities=45% Similarity=0.953 Sum_probs=19.3
Q ss_pred ccccCCCcchhhHHHHHhhc
Q 003533 313 GLVNLGNSCYLAATMQVMFS 332 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ 332 (812)
||.|.||||||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999977
No 110
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=39.22 E-value=42 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
..++++.|.++||++.+|++|+.+-
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~ 171 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKI 171 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3688999999999999999999876
No 111
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=39.10 E-value=20 Score=38.10 Aligned_cols=29 Identities=45% Similarity=0.677 Sum_probs=24.6
Q ss_pred cccCCCcchhhHHHHHhhcChhHHHHhcc
Q 003533 314 LVNLGNSCYLAATMQVMFSTHAFCTRYYT 342 (812)
Q Consensus 314 L~NLGNTCYmNSVLQ~L~~ip~f~~~~l~ 342 (812)
|.|.||+||+||.+|+|.++-.....|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~ 30 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKINTEFDN 30 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhhhhhcCC
Confidence 68999999999999999988777666643
No 112
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=38.73 E-value=76 Score=35.10 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=39.9
Q ss_pred cccccccCCCcchhhHHHHHhhcChh-HHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHA-FCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~-f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
|++=|+=--|.||+||++=.|-++.. |+. .++..+...+..|
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~------------------------~~l~~aw~~f~~G------------- 143 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS------------------------PGLDEAWNEFKAG------------- 143 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS------------------------HHHHHHHHHHHTT-------------
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC------------------------HHHHHHHHHHhCC-------------
Confidence 55566667899999999877654422 211 1233344444444
Q ss_pred cccccCCCCCCCCCchhHHHHHHhhCCCCCcccccchHHHHHHHHHHHHH
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVER 438 (812)
Q Consensus 389 ~~~~~~~~~~~~IsP~~f~~~i~~~~~~F~~~~QQDA~EFL~~LLd~L~~ 438 (812)
+|..|.+.+-.. ..+.-++--||+++|..||+.+..
T Consensus 144 -------------~~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 144 -------------DPAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp ---------------HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred -------------ChHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 255555554322 234456677999999999876653
No 113
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=38.54 E-value=16 Score=39.83 Aligned_cols=17 Identities=6% Similarity=-0.212 Sum_probs=14.5
Q ss_pred CCCceeEEEEEeecCCC
Q 003533 748 GGGSKFLKHILAYFIPN 764 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s 764 (812)
++..|+|+|||.|.|.+
T Consensus 233 ~~~~Y~L~~vi~H~G~~ 249 (300)
T cd02663 233 PDRLYELVAVVVHIGGG 249 (300)
T ss_pred CCeEEEEEEEEEEecCC
Confidence 34689999999999964
No 114
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=37.89 E-value=49 Score=36.10 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHHhcC
Q 003533 681 IDQSKVETLLSF-GFSEEVARNALKASGGDIEKATDWIFNN 720 (812)
Q Consensus 681 ~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~~~e~A~~wl~~~ 720 (812)
..+++|.+|.+- |++-..|++||..++||+..|-.||-..
T Consensus 45 ~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~ 85 (340)
T KOG1071|consen 45 SSKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKK 85 (340)
T ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 457888888765 9999999999999999999999999553
No 115
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=37.63 E-value=17 Score=31.50 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 003533 695 SEEVARNALKASGGDIEKATDWIFNNP 721 (812)
Q Consensus 695 ~~~~a~~AL~~~~~~~e~A~~wl~~~~ 721 (812)
+..+.+.||..++-|+++|++||++.-
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~~ 71 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSKF 71 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 888999999999999999999999864
No 116
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=37.49 E-value=34 Score=37.01 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=32.3
Q ss_pred CHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHhcC
Q 003533 623 NKDIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662 (812)
Q Consensus 623 ~~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wl~~~ 662 (812)
..+.|..|-+ -|-+.-.|++||..+++ |.|.|++||.+.
T Consensus 5 ta~~VKeLRe~TgAGMmdCKkAL~E~~G-d~EkAie~LR~k 44 (296)
T COG0264 5 TAALVKELREKTGAGMMDCKKALEEANG-DIEKAIEWLREK 44 (296)
T ss_pred cHHHHHHHHHHhCCcHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 4456666655 48889999999999977 999999999875
No 117
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.38 E-value=31 Score=28.27 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.0
Q ss_pred HHHHhCCCCHHHHHHHHHHhCC
Q 003533 628 SQLVSMGFNHLHCEKAAVNTSN 649 (812)
Q Consensus 628 ~~L~~MGF~~~~a~~AL~~t~n 649 (812)
..|++|||++..|++-++.++.
T Consensus 7 ~dLi~lGf~~~tA~~IIrqAK~ 28 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQAKA 28 (59)
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 4689999999999999987655
No 118
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=36.92 E-value=50 Score=33.49 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
..++++.|.++||++.+|++|+..-
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~ 166 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASC 166 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3689999999999999999999876
No 119
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=36.86 E-value=72 Score=29.98 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=33.6
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHhc
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (812)
Q Consensus 622 ~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~~ 661 (812)
++.+.+..+.+-|-+++.|++||.-+| |+-.||..|..
T Consensus 113 ~~~e~v~v~a~a~v~~eeAr~aleeag--Dl~~A~k~l~~ 150 (153)
T COG4008 113 PPVEEVEVLADAFVTPEEAREALEEAG--DLRTAMKILRM 150 (153)
T ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 467889999999999999999999987 89999987754
No 120
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=35.33 E-value=38 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=28.1
Q ss_pred ccccccCccccceEEEEec--ccCCceEEEeeeEEEc
Q 003533 537 FYSTALKAKTTATKSAGLT--SFPDYLVLHMRKFVME 571 (812)
Q Consensus 537 y~C~~C~~~~~a~K~~~i~--~lP~vLiIhLkRF~~~ 571 (812)
+.|++||...-..|..... .+.+++=||.+||...
T Consensus 5 ~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 5 FKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 5699999887777766664 6889999999999864
No 121
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.80 E-value=60 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=25.7
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHH
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEE 654 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~ 654 (812)
.+++++.|+.+||++.+|++|+....+.+++.
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~~~~~~ee 173 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASCQSTGTSE 173 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcccCCHHH
Confidence 36799999999999999999998864434433
No 122
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=33.67 E-value=30 Score=37.19 Aligned_cols=17 Identities=18% Similarity=-0.170 Sum_probs=15.0
Q ss_pred CCCceeEEEEEeecCCC
Q 003533 748 GGGSKFLKHILAYFIPN 764 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s 764 (812)
++..|+|+|+|+|.|.+
T Consensus 244 ~~~~Y~L~~vi~H~G~~ 260 (304)
T cd02661 244 GPLKYKLYAVLVHSGFS 260 (304)
T ss_pred CCceeeEEEEEEECCCC
Confidence 45789999999999976
No 123
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=33.13 E-value=25 Score=34.68 Aligned_cols=88 Identities=20% Similarity=0.422 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHhcCCCCCCCCCCCccccccCCCCHHHHHHHHhcCCCH-HHHHH
Q 003533 624 KDIVSQLVSMGF-NHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSE-EVARN 701 (812)
Q Consensus 624 ~~~v~~L~~MGF-~~~~a~~AL~~t~n~~~e~A~~wl~~~~~d~~~~~p~~~~~~~~~~~~~~i~~L~~mGf~~-~~a~~ 701 (812)
.++++-|.+.|| +..-..+.|..-...+.-..++||+.+++ |++.- .....++.+..|..||||- ...+.
T Consensus 43 ~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL~~~id-p~~~~-------~~k~eeev~~~lK~L~YP~~~isKS 114 (157)
T PF03801_consen 43 RKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFLFRQID-PNFKF-------GKKFEEEVPFLLKALGYPFATISKS 114 (157)
T ss_dssp HHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHHHHTTS-TT----------SSTHHHHHHHHHHHTT-SS----HH
T ss_pred HHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHhC-CCCCc-------CcCHHHHHHHHHHHhCCCccccCHH
Confidence 457888999999 66666666665445588899999999954 33311 2256788999999999999 99999
Q ss_pred HHHHhCCC-----HHHHHHHHhc
Q 003533 702 ALKASGGD-----IEKATDWIFN 719 (812)
Q Consensus 702 AL~~~~~~-----~e~A~~wl~~ 719 (812)
+|.+-+.- +=.|+.||..
T Consensus 115 ~L~a~gs~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 115 SLQAPGSPHSWPHLLGALHWLVE 137 (157)
T ss_dssp HHHSTTSTTTHHHHHHHHHHHHH
T ss_pred HccCCCCcccHHHHHHHHHHHHH
Confidence 99887532 5688999854
No 124
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=33.09 E-value=30 Score=37.18 Aligned_cols=24 Identities=4% Similarity=-0.265 Sum_probs=17.7
Q ss_pred CCCceeEEEEEeecCCC--hhhHHHH
Q 003533 748 GGGSKFLKHILAYFIPN--LYMLSVL 771 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s--~~~a~~~ 771 (812)
.+..|+|+|||.|.|.+ .|+-+.+
T Consensus 198 ~~~~Y~L~~vi~H~G~~~~GHY~a~v 223 (279)
T cd02667 198 SSVLYRLYGVVEHSGTMRSGHYVAYV 223 (279)
T ss_pred CCceEEEEEEEEEeCCCCCCEeEEEE
Confidence 45789999999999964 4553333
No 125
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.69 E-value=75 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.7
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
..+++..|.++||++.+|.+|+...
T Consensus 152 ~~ea~~AL~~LGy~~~ea~~al~~i 176 (197)
T PRK14603 152 AEDAVLALLALGFREAQVRSVVAEL 176 (197)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3689999999999999999999875
No 126
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.12 E-value=78 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhC
Q 003533 682 DQSKVETLLSFGFSEEVARNALKASG 707 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~~ 707 (812)
..+++..|+++||++.+|++|+.+-.
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~ 170 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIK 170 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 36899999999999999999998763
No 127
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=31.71 E-value=40 Score=37.74 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHH
Q 003533 680 AIDQSKVETLLSFGFSEEVARNALK 704 (812)
Q Consensus 680 ~~~~~~i~~L~~mGf~~~~a~~AL~ 704 (812)
.+-.|.|+.+..|||.+++++...+
T Consensus 319 ~p~ddvidKv~~MGf~rDqV~a~v~ 343 (358)
T PF07223_consen 319 HPYDDVIDKVASMGFRRDQVRATVR 343 (358)
T ss_pred CcHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4567999999999999999987654
No 128
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=31.03 E-value=32 Score=36.10 Aligned_cols=24 Identities=4% Similarity=-0.150 Sum_probs=17.4
Q ss_pred CCCceeEEEEEeecCC--ChhhHHHH
Q 003533 748 GGGSKFLKHILAYFIP--NLYMLSVL 771 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~--s~~~a~~~ 771 (812)
.+..|+|+|+|+|.|. +.|+.+.+
T Consensus 159 ~~~~Y~L~avi~H~G~~~~GHY~~~~ 184 (240)
T cd02662 159 PKVLYRLRAVVVHYGSHSSGHYVCYR 184 (240)
T ss_pred CCceEEEEEEEEEeccCCCceEEEEE
Confidence 4568999999999995 44444333
No 129
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=30.91 E-value=35 Score=37.34 Aligned_cols=17 Identities=12% Similarity=-0.211 Sum_probs=14.8
Q ss_pred CCCCceeEEEEEeecCC
Q 003533 747 DGGGSKFLKHILAYFIP 763 (812)
Q Consensus 747 ~~~~~y~L~a~I~H~G~ 763 (812)
.++..|+|+|+|+|.|.
T Consensus 268 ~~~~~Y~L~avi~H~G~ 284 (328)
T cd02660 268 DPDYTYDLFAVVVHKGT 284 (328)
T ss_pred CCCceEEEEEEEEeecc
Confidence 45679999999999994
No 130
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=30.80 E-value=33 Score=38.08 Aligned_cols=24 Identities=4% Similarity=-0.244 Sum_probs=18.0
Q ss_pred CCCceeEEEEEeecCCC---hhhHHHH
Q 003533 748 GGGSKFLKHILAYFIPN---LYMLSVL 771 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s---~~~a~~~ 771 (812)
.+..|+|.|||+|.|.+ .|+...+
T Consensus 268 ~~~~Y~L~~VI~H~G~~~~~GHY~a~v 294 (332)
T cd02671 268 KNDVYRLFAVVMHSGATISSGHYTAYV 294 (332)
T ss_pred CCCeEEEEEEEEEcCCCCCCCeEEEEE
Confidence 35789999999999964 5654433
No 131
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.65 E-value=87 Score=32.27 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 681 IDQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 681 ~~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
...++++.|+++||++.+|++|+.+.
T Consensus 154 ~~~ea~~AL~~LGy~~~ea~~av~~~ 179 (203)
T PRK14602 154 VFRDALAGLANLGYGEEEARPVLKEV 179 (203)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34689999999999999999999876
No 132
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.28 E-value=32 Score=24.81 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.8
Q ss_pred eEEEeeeCccccc
Q 003533 193 LWLNLTDGMILCG 205 (812)
Q Consensus 193 lw~CL~Cg~~~Cg 205 (812)
.|+|..||++.=|
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 4666666666443
No 133
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=29.83 E-value=94 Score=31.64 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
..++++.|+++||++.+|++|+...
T Consensus 143 ~~e~~~AL~~LGy~~~ea~~av~~~ 167 (188)
T PRK14606 143 YHESLEALVSLGYPEKQAREAVKHV 167 (188)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3689999999999999999999877
No 134
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=29.62 E-value=45 Score=24.97 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 003533 694 FSEEVARNALKASGGDIEKATDWI 717 (812)
Q Consensus 694 f~~~~a~~AL~~~~~~~e~A~~wl 717 (812)
|.+...+.||..++||+.+|+..|
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L 28 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL 28 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467788999999999999998865
No 135
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=28.23 E-value=11 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCHHHHHHHH-hCCCCHHHHHHHHHHhC
Q 003533 622 ANKDIVSQLV-SMGFNHLHCEKAAVNTS 648 (812)
Q Consensus 622 ~~~~~v~~L~-~MGF~~~~a~~AL~~t~ 648 (812)
+|+++|..|. .|||++.....||+...
T Consensus 1 ide~vv~~Ls~tMGY~kdeI~eaL~~~~ 28 (46)
T PF08587_consen 1 IDEDVVSKLSKTMGYDKDEIYEALESSE 28 (46)
T ss_dssp T-HCCHHHHHCTT---HHHHHHHCCSSS
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 3566777775 59999999999998743
No 136
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=27.83 E-value=27 Score=32.16 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCCeEEEee--------eCccccc-CccCCCCCCCchhhhHhhhcC--Cc-eeEeecccccCC---CCceEEeccCCCC
Q 003533 189 KRDNLWLNLT--------DGMILCG-RRNWDGTGGNNHAVEHYKETG--YP-LAVKLGTITSDL---EGADVFSYPEDDS 253 (812)
Q Consensus 189 ~~~~lw~CL~--------Cg~~~Cg-r~~~~g~~gn~Ha~~H~~~~~--H~-~~v~lgtit~~~---~~~~vycy~cd~~ 253 (812)
+...+|+|-. ||+.+|+ |.+| .-||+.|-+.+. |+ +.= .+..|+. .....||=.|..+
T Consensus 11 L~~~l~i~~~~~k~vkc~CGh~f~d~r~Nw-----K~~alv~vRd~~E~~~~iYp--~~~aPdp~w~~irEyyCP~Cgt~ 83 (112)
T PF08882_consen 11 LGPHLWIVQKKDKVVKCDCGHEFCDARENW-----KLGALVYVRDPEEIHPEIYP--FTMAPDPEWQVIREYYCPGCGTQ 83 (112)
T ss_pred CCCcEEEEEecCceeeccCCCeecChhcCh-----hhCcEEEecChHHhhhhhcc--cccCCCCCcEEEEEEECCCCcce
Confidence 3445677776 9999996 4445 268888777654 42 211 1334441 2246788889887
Q ss_pred CC
Q 003533 254 VV 255 (812)
Q Consensus 254 v~ 255 (812)
+.
T Consensus 84 le 85 (112)
T PF08882_consen 84 LE 85 (112)
T ss_pred eE
Confidence 64
No 137
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.69 E-value=41 Score=35.35 Aligned_cols=21 Identities=48% Similarity=1.010 Sum_probs=19.8
Q ss_pred ccccCCCcchhhHHHHHhhcC
Q 003533 313 GLVNLGNSCYLAATMQVMFST 333 (812)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~i 333 (812)
||.|.||||++|+|.|+|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFSQ 21 (228)
T ss_pred CccccCcchhHHHHHHHHHHH
Confidence 899999999999999999984
No 138
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=27.24 E-value=71 Score=30.05 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred cCCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 003533 621 VANKDIVSQLV-SMGFNHLHCEKAAVNTSNAGVEEAMNWL 659 (812)
Q Consensus 621 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~~wl 659 (812)
.++++-|.-.+ .-|-|++.|++||..+++ |+-.|+--|
T Consensus 82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~G-DlaeAIm~L 120 (122)
T COG1308 82 DISEEDIKLVMEQAGVSREEAIKALEEAGG-DLAEAIMKL 120 (122)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHHHHh
Confidence 35666665554 479999999999999999 888887654
No 139
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=26.79 E-value=1.2e+02 Score=30.87 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhC
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTS 648 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~ 648 (812)
.++++..|+.+||++..+++|+..-.
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~ 170 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIK 170 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 36789999999999999999998764
No 140
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.56 E-value=58 Score=26.70 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=18.2
Q ss_pred HHHHhcCCCHHHHHHHHHHhCC
Q 003533 687 ETLLSFGFSEEVARNALKASGG 708 (812)
Q Consensus 687 ~~L~~mGf~~~~a~~AL~~~~~ 708 (812)
.-|++|||++.+|+.-+++...
T Consensus 7 ~dLi~lGf~~~tA~~IIrqAK~ 28 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQAKA 28 (59)
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 3588999999999999887643
No 141
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=26.28 E-value=1e+02 Score=31.33 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 003533 624 KDIVSQLVSMGFNHLHCEKAAVNT 647 (812)
Q Consensus 624 ~~~v~~L~~MGF~~~~a~~AL~~t 647 (812)
.++++.|+.+||++..+++|+...
T Consensus 144 ~e~~~AL~~LGy~~~ea~~av~~~ 167 (188)
T PRK14606 144 HESLEALVSLGYPEKQAREAVKHV 167 (188)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999877
No 142
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.40 E-value=74 Score=32.66 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 003533 682 DQSKVETLLSFGFSEEVARNALKAS 706 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~ 706 (812)
.+++++.|+++||++..|++|+..-
T Consensus 144 ~~ea~~AL~~LGy~~~ea~~al~~v 168 (196)
T PRK13901 144 FKELEQSIVNMGFDRKLVNSAIKEI 168 (196)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3689999999999999999999755
No 143
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.65 E-value=52 Score=35.36 Aligned_cols=17 Identities=6% Similarity=-0.306 Sum_probs=14.5
Q ss_pred CCCceeEEEEEeecCCC
Q 003533 748 GGGSKFLKHILAYFIPN 764 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~s 764 (812)
+...|+|.|+|+|+|.+
T Consensus 209 ~~~~Y~L~gvV~hig~~ 225 (268)
T cd02672 209 SIYKYELVGYVCEINDS 225 (268)
T ss_pred CCceEEEEEEEEEecCC
Confidence 34689999999999965
No 144
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=25 Score=39.24 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=65.4
Q ss_pred cccccccCCCcchhhHHHHHhhcChhHHHHhccCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhc
Q 003533 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (812)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~qL~kL~~~l~sg~ys~~~~~~~~~~~ 389 (812)
-++|+.|.||-|..+|..|.+.+.-++....-... ......+..-....+.++|.+.....-..+.......-+
T Consensus 177 t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~------k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlq 250 (420)
T KOG1871|consen 177 TPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQ------KTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQ 250 (420)
T ss_pred cccccccccccccccchhhcccccCchhhhcCCcc------cCccCCCCCcccCcHHHhhccccccceeccccccccccC
Confidence 46899999999999999999999998887764321 101111222222345566665554333322221110000
Q ss_pred c--cccCCCCCCCCCchh--HHHHHHh-hCCCCCc--------ccccchHHHHHHHHHHHHHHh
Q 003533 390 A--ATTTDTKQEGIPPRM--FKAVIAA-SHPEFSS--------MRQQDALEFFLHFVDQVERVH 440 (812)
Q Consensus 390 ~--~~~~~~~~~~IsP~~--f~~~i~~-~~~~F~~--------~~QQDA~EFL~~LLd~L~~~~ 440 (812)
. .-..+.....|.+.. |.....+ ..|.+++ .+|-++.+|...|+..+++..
T Consensus 251 PF~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ 314 (420)
T KOG1871|consen 251 PFFTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFV 314 (420)
T ss_pred ccceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHH
Confidence 0 000001111222211 1111111 1223333 389999999999999999875
No 145
>PF14353 CpXC: CpXC protein
Probab=24.28 E-value=1.2e+02 Score=28.47 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=11.7
Q ss_pred cCCcccCcccccccCcccc
Q 003533 529 SAPEELPDFYSTALKAKTT 547 (812)
Q Consensus 529 ~~~E~l~~y~C~~C~~~~~ 547 (812)
...+... +.|++||....
T Consensus 32 l~g~l~~-~~CP~Cg~~~~ 49 (128)
T PF14353_consen 32 LDGSLFS-FTCPSCGHKFR 49 (128)
T ss_pred HcCCcCE-EECCCCCCcee
Confidence 3333334 99999997653
No 146
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=24.12 E-value=1.5e+02 Score=32.25 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHH
Q 003533 693 GFSEEVARNALKASGGDIEKATD 715 (812)
Q Consensus 693 Gf~~~~a~~AL~~~~~~~e~A~~ 715 (812)
|++.+.|++.|.+++|++-.|+|
T Consensus 269 ~~~~~~a~~~l~~~~g~~~~~l~ 291 (291)
T TIGR00274 269 TLSASEAKVLLDRHGGFLRQALD 291 (291)
T ss_pred CCCHHHHHHHHHHcCCcHHHhhC
Confidence 79999999999999999998875
No 147
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.07 E-value=56 Score=35.83 Aligned_cols=23 Identities=13% Similarity=-0.247 Sum_probs=16.9
Q ss_pred CCCceeEEEEEeecCC--ChhhHHH
Q 003533 748 GGGSKFLKHILAYFIP--NLYMLSV 770 (812)
Q Consensus 748 ~~~~y~L~a~I~H~G~--s~~~a~~ 770 (812)
++..|+|+|+|+|.|. +.|+-.+
T Consensus 248 ~~~~Y~L~~vI~H~G~~~~GHY~~~ 272 (334)
T cd02659 248 ESYIYELHGVLVHSGDAHGGHYYSY 272 (334)
T ss_pred CCeeEEEEEEEEecCCCCCCCeEEE
Confidence 4678999999999994 3444333
No 148
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=23.41 E-value=1e+02 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhC
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTS 648 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~ 648 (812)
.++++..|..+||++..+++|+....
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~~ 172 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKIK 172 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 36799999999999999999998763
No 149
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.24 E-value=1.4e+02 Score=30.89 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=22.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNT 647 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t 647 (812)
-+++++.|+.+||++.+|++|+...
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~ 179 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEV 179 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4679999999999999999999876
No 150
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=23.15 E-value=53 Score=39.34 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCccCCCCCCCCcccCCCCcCCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHh
Q 003533 601 PGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLL 660 (812)
Q Consensus 601 ~gE~~lpe~~~~~~~~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wl~ 660 (812)
..+.++|-..+.+. ++.-.++.+.++-|+.-||.+.-+-.||..+++..++.|++++-
T Consensus 69 ir~sl~p~~~e~g~--~a~s~sn~qmlq~lv~ag~d~~~a~~al~~pns~sie~sie~~s 126 (1034)
T KOG0608|consen 69 IRESLLPFANEAGL--SAGSESNSQMLQGLVGAGNDRHMALGALATPNSRSIEASIETIS 126 (1034)
T ss_pred hhhhcCCcchhcCC--ccccccchhhhHhhhhccccchhhhhhhcCCCccccchhhhccc
Confidence 35566665554431 23456899999999999999999999999999999999999974
No 151
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.65 E-value=1.5e+02 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhC
Q 003533 682 DQSKVETLLSFGFSEEVARNALKASG 707 (812)
Q Consensus 682 ~~~~i~~L~~mGf~~~~a~~AL~~~~ 707 (812)
..+++..|.++||++.+|.+|+....
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~ 173 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLG 173 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 46899999999999999999998773
No 152
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.60 E-value=39 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=11.6
Q ss_pred CcccccCCC-----CCeEEEeeeCc
Q 003533 182 WKCAKCDKR-----DNLWLNLTDGM 201 (812)
Q Consensus 182 ~~C~~C~~~-----~~lw~CL~Cg~ 201 (812)
.+|..|++. ..+++|-+||+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCCcceeccCCEEeCCcccc
Confidence 368888764 56899999986
No 153
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.57 E-value=1.5e+02 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNT 647 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t 647 (812)
-++++..|+.+||++..+++|+...
T Consensus 152 ~~ea~~AL~~LGy~~~ea~~al~~i 176 (197)
T PRK14603 152 AEDAVLALLALGFREAQVRSVVAEL 176 (197)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3679999999999999999999875
No 154
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.54 E-value=2.2e+02 Score=31.17 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.0
Q ss_pred cCCCHHHHHHHHHHhCCCHHHHHH
Q 003533 692 FGFSEEVARNALKASGGDIEKATD 715 (812)
Q Consensus 692 mGf~~~~a~~AL~~~~~~~e~A~~ 715 (812)
.|++.+.|++.|.+++|++-.|++
T Consensus 273 ~~~~~~~a~~~l~~~~g~~~~~~~ 296 (299)
T PRK05441 273 TGLDAAEAKALLARHGGFLRKALA 296 (299)
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHh
Confidence 379999999999999999999986
No 155
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=22.07 E-value=87 Score=32.26 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Q 003533 683 QSKVETLLSFGFSEEVARNALKASG 707 (812)
Q Consensus 683 ~~~i~~L~~mGf~~~~a~~AL~~~~ 707 (812)
.+++..|++|||++.++++|+..-.
T Consensus 157 ~~~v~AL~~LGy~~~e~~~av~~v~ 181 (201)
T COG0632 157 EEAVEALVALGYKEKEIKKAVKKVL 181 (201)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3448999999999999999987664
No 156
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=21.91 E-value=74 Score=26.53 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=23.3
Q ss_pred ccccccCccccceEEEEe--cccCCceEEEeeeEEEc
Q 003533 537 FYSTALKAKTTATKSAGL--TSFPDYLVLHMRKFVME 571 (812)
Q Consensus 537 y~C~~C~~~~~a~K~~~i--~~lP~vLiIhLkRF~~~ 571 (812)
|.|++||...--.++.+. ..+-.++=||.+||..-
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~v 37 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTTV 37 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEEE
Confidence 689999986544444443 23556678888888753
No 157
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.86 E-value=95 Score=31.87 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTSN 649 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~n 649 (812)
.+++++.|+.+||++..+++|+....+
T Consensus 144 ~~ea~~AL~~LGy~~~ea~~al~~v~~ 170 (196)
T PRK13901 144 FKELEQSIVNMGFDRKLVNSAIKEIML 170 (196)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 367999999999999999999987654
No 158
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.63 E-value=1.5e+02 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.4
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhC
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNTS 648 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t~ 648 (812)
.++++..|...||++..|++|+....
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~ 173 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLG 173 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 46789999999999999999998874
No 159
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=20.66 E-value=87 Score=35.14 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=19.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHH
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVN 646 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~ 646 (812)
=.++|..++.|||+++.++..++.
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~r 344 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRR 344 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 457999999999999998766543
No 160
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=20.60 E-value=61 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 003533 636 NHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (812)
Q Consensus 636 ~~~~a~~AL~~t~n~~~e~A~~wl~~~~ 663 (812)
+....+.||.+... +++.|++||++..
T Consensus 45 ~e~~i~eal~~~~f-DvekAl~~Ll~~~ 71 (79)
T PF08938_consen 45 PEEQIKEALWHYYF-DVEKALDYLLSKF 71 (79)
T ss_dssp -CCHHHHHHHHTTT--CCHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcC-CHHHHHHHHHHhc
Confidence 77888999999888 9999999999863
No 161
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.38 E-value=1.8e+02 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh
Q 003533 623 NKDIVSQLVSMGFNHLHCEKAAVNT 647 (812)
Q Consensus 623 ~~~~v~~L~~MGF~~~~a~~AL~~t 647 (812)
.++++..|+.+||++..+++|+...
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i 173 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAAL 173 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3679999999999999999999876
Done!