Query 003533
Match_columns 812
No_of_seqs 442 out of 2722
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:26:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003533.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1581-1585//hhsearch_pdb/003533hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 1345.5 54.7 764 1-773 20-821 (854)
2 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 517.6 19.9 330 180-597 47-399 (476)
3 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 384.6 21.3 254 306-596 3-291 (367)
4 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 380.0 20.0 242 301-596 49-328 (396)
5 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 361.3 19.9 239 305-596 3-276 (348)
6 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 358.0 19.8 236 309-596 1-286 (355)
7 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 355.3 14.8 234 308-600 11-274 (404)
8 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 350.6 16.2 229 306-599 19-265 (415)
9 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 340.4 20.3 224 308-597 3-232 (353)
10 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 336.9 21.0 228 304-597 168-401 (522)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=1345.54 Aligned_cols=764 Identities=48% Similarity=0.844 Sum_probs=675.1
Q ss_pred CCHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC
Q ss_conf 96122--0354307666899899200454310034578999717825664123801266553005992899999898337
Q 003533 1 MNPMD--LLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLV 78 (812)
Q Consensus 1 ~~~~~--~~~~~~~~~~~p~~~~~v~k~eC~~~f~~~~~~~Gl~vcl~~f~~~~~~~~~~h~~~~~~~~~l~i~~~~~~~ 78 (812)
|.-|+ ++++|++.+++|+++++||||||+||||||++++||||||.||+|||++|+.+|+++|||++||||||++|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 99 (854)
T 3ihp_A 20 MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPK 99 (854)
T ss_dssp CCCCHHHHHHHTGGGCCCCCTTCCCCCSSCSSSSCCTTSTTCEEEETTTCCEECTTTHHHHHHHHCCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 54313667888616775889998484042714137899999748710114430689999987432880699999996256
Q ss_pred CCC------CCCCCCCCEEEEECCCCCCCCCCCCE--EEEEEEEECCCCCCCCCC-CCCCHH----HHHHHHHHHHHCCH
Q ss_conf 999------99999983145200389999955720--278999914873235899-999689----99999999961007
Q 003533 79 APE------DRPSKKPTLLAIGVEGGFDNNEAEYD--ETHSIVILPEYVTLSYPS-VELPEK----VRLAVDAILMAEGA 145 (812)
Q Consensus 79 ~~~------~~~~~~~~kl~i~~~~g~~~~~~~y~--~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~i~~~~s~ 145 (812)
+++ ++|++||||||||+||||+.++++|+ +.|+|||+|+...|++++ +++|+. +..+|++||+|+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (854)
T 3ihp_A 100 EEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSA 179 (854)
T ss_dssp ------------------------------------CEEEEEEETTTTEEECTTCCTTSCHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 42223344667766763367861147766545404664589999148761257873448736679999999999855888
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 78999986131467778231011134798668988875443488998289803086343585579999981565475321
Q 003533 146 ERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKET 225 (812)
Q Consensus 146 ~~~~~~~~w~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~i~Cgr~~~~g~~~~~Ha~~H~~~~ 225 (812)
++++++++|+++++++|+|+.++.|.+++..+++++|+|+.|+...|+|+||+||+|||||++|+|+||++||+.||+++
T Consensus 180 ~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~ 259 (854)
T 3ihp_A 180 SRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRET 259 (854)
T ss_dssp ------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 89999986427668877381612103555667988993767689686689712798661513047888753899987611
Q ss_pred CCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 984258406423689876488414899988634899987434564332001233455541013544-4321014688545
Q 003533 226 GYPLAVKLGTITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNF-DWNRIQESGQDVE 304 (812)
Q Consensus 226 ~H~~~v~lgtit~~~~~~~vycy~cd~~v~d~~l~~~L~~~gI~~~~~~kteksl~el~~e~n~~~-e~~~~~esg~~l~ 304 (812)
+||++++|+||||+ +++||||.||++|.||.|.+||++|||++.+++||+|++.|+++++|.+| +|++++++|..+.
T Consensus 260 ~H~~~~~l~t~~~~--~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~ 337 (854)
T 3ihp_A 260 GYPLAVKLGTITPD--GADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLK 337 (854)
T ss_dssp CCCEEEETTCCBTT--BCCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------
T ss_pred CCCEEEECCCCCCC--CCEEEECCCCCEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCC
T ss_conf 87579985776777--7708981678733475278899873722244445501210100332222001333133576235
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 66799644544589940166999996147267887503784133310399999752799999999998329999970335
Q 003533 305 PLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEK 384 (812)
Q Consensus 305 p~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~ 384 (812)
|.++||++||.|+|||||||||||+|+++|+|+++|+... ...+......+..++.++|++|+.+|++++|+.+....
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~--~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~ 415 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKL--EKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPES 415 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTH--HHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------
T ss_pred CCCCCCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 4567886551766776203379999857299999998543--44302566785411889999999987456645444211
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEE-C
Q ss_conf 543102666798878878144799997208888854556568899999999998834999999746300588799990-7
Q 003533 385 DAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-P 463 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~lF~g~l~~~i~C-~ 463 (812)
..... .......+.+|+|..|+..+++.++.|++++||||+|||++||+.|+++.+. .+.+.++|+|.++++++| .
T Consensus 416 ~~~~~-~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~--~s~i~~lF~G~l~s~i~C~~ 492 (854)
T 3ihp_A 416 GDGER-VPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS--SENPNEVFRFLVEEKIKCLA 492 (854)
T ss_dssp --------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT--SCCGGGGTCEEEEEEEEETT
T ss_pred CCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCCCHHHCCCEEEEEEEECC
T ss_conf 22223-3333467775481999999864033112144337899999999999987365--68822210735889999648
Q ss_pred CCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99764200153358741589533557899999987775520698778423358987999999741497425863355458
Q 003533 464 SGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALK 543 (812)
Q Consensus 464 C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~y~C~~C~ 543 (812)
|++++++.++|++|+|+||.....+..++..|+.++......|.+.+ +..++.++|++||+.|+.+|.|++|+|++|+
T Consensus 493 C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~ 570 (854)
T 3ihp_A 493 TEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALP--ELVRAQVPFSSCLEAYGAPEQVDDFWSTALQ 570 (854)
T ss_dssp TTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCC--CCCCEECCHHHHHHHHHSCEEEEEEEETTTT
T ss_pred CCCEEEEEEECEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 99776776306478845786323442100010011110002355443--2456777799999985584075331035568
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf 6555438877311478159984247883794200166243229854531111489999986699999998656--89986
Q 003533 544 AKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQ--SNKPV 621 (812)
Q Consensus 544 ~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~g~q~~E~~lp~~~~~~~~~--~~~~~ 621 (812)
.++.|+|+.+|.+||+||+||||||.++.+|.++|++..|.||+.|||++|++.|++++|+++|+..++...+ +++++
T Consensus 571 ~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~ 650 (854)
T 3ihp_A 571 AKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPM 650 (854)
T ss_dssp EEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC--------------
T ss_pred CCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEECCCCEEHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 73005388882128966799945313567773277886985688070688506788987212133566555655445667
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC------C---CCCCCHHHHHHHHHC
Q ss_conf 7999999999389997899999999379998999999860799999899786333------4---677997899898726
Q 003533 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQET------Q---CAAIDQSKVETLLSF 692 (812)
Q Consensus 622 ~~~~~i~~L~~MGF~~~~a~rAL~~t~n~~~e~A~~wl~~~~ed~d~~~p~~~~~------~---~~~~~~~~i~~l~~m 692 (812)
+|++.+++|++|||++++|++|+++|+|+++|+||+||++||+|+|+++|+.... + ...++++.+++|.+|
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~m 730 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM 730 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 68899999986489778888888631798567776777641676332465556666666665555688998999999982
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCC----CCCCCCCCCCCCCCCCCCEEEEEEEEECCC--
Q ss_conf 999999999999929999999999851999999---98765467----899889999999999975028899740377--
Q 003533 693 GFSEEVARNALKASGGDIEKATDWIFNNPDAST---SSDMDAAT----SSTAQTPADAGLPDGGGSKFLKHILAYFIP-- 763 (812)
Q Consensus 693 Gf~~~~a~~AL~~~~~n~e~A~dwl~~~~dd~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~Y~L~a~I~H~G~-- 763 (812)
||+.++|++||++++||+++|+||+|+|+|+.+ ..+.+... ............++++++|+|+|||+|+|.
T Consensus 731 Gf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~ 810 (854)
T 3ihp_A 731 GFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTST 810 (854)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESSCS
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 88788999999860573877777640684433432100122223345654344555578888984599999999644899
Q ss_pred -CHHHHHHHHH
Q ss_conf -8566889987
Q 003533 764 -NLYMLSVLHA 773 (812)
Q Consensus 764 -s~~~~~~~~~ 773 (812)
+.||..++..
T Consensus 811 ~~GHY~~~~~~ 821 (854)
T 3ihp_A 811 MCGHYVCHIKK 821 (854)
T ss_dssp SCCEEEEEEEE
T ss_pred CCCCEEEEEEE
T ss_conf 97282999975
No 2
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=517.64 Aligned_cols=330 Identities=20% Similarity=0.310 Sum_probs=268.3
Q ss_pred CCCCCCCCCCC--CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 88754434889--9828980308634358557999998156547532198425840642368987648841489998863
Q 003533 180 SGWKCAKCDKR--DNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDP 257 (812)
Q Consensus 180 ~~~~C~~C~~~--~~lw~CL~Cg~i~Cgr~~~~g~~~~~Ha~~H~~~~~H~~~v~lgtit~~~~~~~vycy~cd~~v~d~ 257 (812)
+.++|+.|+.. .++|+||+||++|||+ ++||+.||.+++|++++.+ ..+++|||.||++|.|+
T Consensus 47 ~~~~C~~c~~~~~~~~~~cl~cg~~~c~~--------~~h~~~H~~~~~h~~~~~~-------~~~~~~c~~~~~~v~d~ 111 (476)
T 3mhs_A 47 NTMKCGTCHEINSGATFMCLQCGFCGCWN--------HSHFLSHSKQIGHIFGINS-------NNGLLFCFKCEDYIGNI 111 (476)
T ss_dssp HHSBCTTTCCBCSSSEEEESSSSCEEETT--------TTHHHHHHHHHCCCEEEET-------TTCCEEETTTTEEECSC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCC--------CHHHHHHHCCCCCCEEEEC-------CCCCEEECCCCCCCCCH
T ss_conf 79974436677999866958799875698--------3099998530499689977-------99938868988783467
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 48999874345643320012334555410135444321014688545667996445445899401669999961472678
Q 003533 258 LLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFC 337 (812)
Q Consensus 258 ~l~~~L~~~gI~~~~~~kteksl~el~~e~n~~~e~~~~~esg~~l~p~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~ 337 (812)
.|.++... +..|+ .+.+......+.+++|++||.|+|||||||||||+|+++|+|+
T Consensus 112 ~l~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr 167 (476)
T 3mhs_A 112 DLINDAIL----------------------AKYWD--DVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFI 167 (476)
T ss_dssp HHHHTGGG----------------------GGGHH--HHHHHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHH----------------------HHCCC--HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 89999876----------------------51111--1222146887657889978770884679989999986789999
Q ss_pred HHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH---HHHHC
Q ss_conf 875037841333103999997527999999999983299999703355431026667988788781447999---97208
Q 003533 338 TRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAV---IAASH 414 (812)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~I~P~~fk~~---i~~~~ 414 (812)
++++...+ ........+..++.++|.+++..+++........ ......+.|..|+.+ +++.+
T Consensus 168 ~~~l~~~~---~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~ 232 (476)
T 3mhs_A 168 RHSMSQIH---SNNCKVRSPDKCFSCALDKIVHELYGALNTKQAS------------SSSTSTNRQTGFIYLLTCAWKIN 232 (476)
T ss_dssp HHHHTTHH---HHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------------------CCCSCHHHHHHHHHHHHHC
T ss_pred HHHHHCCH---HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC------------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99874503---5544578864105899999999996120333345------------66655657500899999988745
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC--------------CCCCCCCCEEEEEEEEEEE-CCCCEE-EEECCCEEEE
Q ss_conf 88885455656889999999999883499--------------9999746300588799990-799764-2001533587
Q 003533 415 PEFSSMRQQDALEFFLHFVDQVERVHSGK--------------PEVDPTKSFKFGIEERISC-PSGKVA-YNRRLDYILS 478 (812)
Q Consensus 415 p~F~~~~QQDA~EFl~~LLd~L~~~~~~~--------------~~~~i~~lF~g~l~~~i~C-~C~~vs-~~~e~~~~Ls 478 (812)
+.|++++||||+|||.+||+.|+++.... ..+.+.++|+|.++++++| .|+.++ ++.++|++|+
T Consensus 233 ~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~Ls 312 (476)
T 3mhs_A 233 QNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLS 312 (476)
T ss_dssp GGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCEECCCCCCHHHHC
T ss_conf 12388877599999999999999997641566533454455668880021132599988998999985178656666613
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCEEEEEECC
Q ss_conf 4158953355789999998777552069877842335898799999974149742586--33554586555438877311
Q 003533 479 LGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYSTALKAKTTATKSAGLTS 556 (812)
Q Consensus 479 L~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~--y~C~~C~~~~~a~K~~~i~~ 556 (812)
|+||.. .+|++||+.|+.+|.+++ |+|++|+.++.++|+.+|.+
T Consensus 313 L~i~~~----------------------------------~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~ 358 (476)
T 3mhs_A 313 LDIKDK----------------------------------KKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHK 358 (476)
T ss_dssp ECCTTC----------------------------------CBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEE
T ss_pred CCHHHH----------------------------------HHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 201246----------------------------------6899999986384221477876886688565789987014
Q ss_pred CCCCEEEEEEEEEECCCCCEECCCEEEECCCCCCCCCCCCC
Q ss_conf 47815998424788379420016624322985453111148
Q 003533 557 FPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 557 lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
+|+||+||||||.++.+|...|++..|.||+.|||++|+..
T Consensus 359 lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~ 399 (476)
T 3mhs_A 359 LPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCST 399 (476)
T ss_dssp BCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSC
T ss_pred CCCCEEEEEEECCCCCCCCEEECCEEECCCCEEECHHHCCC
T ss_conf 97113998440215489971789878738970003432375
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=384.62 Aligned_cols=254 Identities=24% Similarity=0.410 Sum_probs=210.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 67996445445899401669999961472678875037841333103999997527999999999983299999703355
Q 003533 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKD 385 (812)
Q Consensus 306 ~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~ 385 (812)
.++||++||.|+|||||||||||+|+++|+|+++++...+...+....+.....++.++|++|+..|+++
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~---------- 72 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG---------- 72 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS----------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC----------
T ss_conf 7898980876488564989999999777999999973722555044698886429999999999999748----------
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC---------------------
Q ss_conf 43102666798878878144799997208888854556568899999999998834999---------------------
Q 003533 386 AAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP--------------------- 444 (812)
Q Consensus 386 ~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~--------------------- 444 (812)
....++|..|+..+++.++.|.+++||||||||.+|||.|++++....
T Consensus 73 -----------~~~~i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~ 141 (367)
T 2y6e_A 73 -----------RDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKE 141 (367)
T ss_dssp -----------SCSEECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHH
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -----------998738799999999740410898787879999999999999987512577644556567960677899
Q ss_pred ---------CCCCCCCEEEEEEEEEEE-CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---------999746300588799990-7997642001533587415895335578999999877755206987784233
Q 003533 445 ---------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEI 514 (812)
Q Consensus 445 ---------~~~i~~lF~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~ 514 (812)
.+.+.++|+|+++++++| .|++++.+.++|++|+|+||....... ++..++. ...
T Consensus 142 ~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~-~~~~~~~--------------~~~ 206 (367)
T 2y6e_A 142 AWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVM-EGPMLQP--------------QKK 206 (367)
T ss_dssp HHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------------------
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCC-EEEEECC--------------CCC
T ss_conf 9999887069823013376884358908999985337567057731798767750-1332056--------------445
Q ss_pred CCCCCCHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEECCCEEEECCC-CCC
Q ss_conf 5898799999974149742586---335545865554388773114781599842478837942001662432298-545
Q 003533 515 VRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPD-IID 590 (812)
Q Consensus 515 ~~~~~sL~dcL~~f~~~E~ie~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP~-~LD 590 (812)
..+.++|++||+.|+.+|.+++ |+|++|++++.|+|+.+|.++|+||+||||||.++ .|...|++..|.||. .||
T Consensus 207 ~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~-~~~~~K~~~~v~fp~~~Ld 285 (367)
T 2y6e_A 207 KKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYN-RYWRDKLDTVVEFPIRGLN 285 (367)
T ss_dssp ---CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEEC-SSCEEECCCCEECCSSCEE
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECEEEC-CCCCEECCCEEEECCCCCC
T ss_conf 678888999999861616478998724878788750789988824885789998476505-7663353763893177677
Q ss_pred CCCCCC
Q ss_conf 311114
Q 003533 591 ISHMRS 596 (812)
Q Consensus 591 Ls~y~~ 596 (812)
|++|+.
T Consensus 286 l~~~~~ 291 (367)
T 2y6e_A 286 MSEFVC 291 (367)
T ss_dssp CGGGBS
T ss_pred HHHHCC
T ss_conf 566425
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=379.97 Aligned_cols=242 Identities=24% Similarity=0.434 Sum_probs=207.3
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8545667---9964454458994016699999614726788750378413331039999975279999999999832999
Q 003533 301 QDVEPLF---GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKY 377 (812)
Q Consensus 301 ~~l~p~~---gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~y 377 (812)
+.+.|.+ ++|++||.|+|||||||||||+|+++|+|+++|+...+...+...........+..++..++..||+++
T Consensus 49 ~~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~- 127 (396)
T 2gfo_A 49 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ- 127 (396)
T ss_dssp GGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 3568766888778666561687416729999853788999999707421331235877741099999999999997099-
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-------------
Q ss_conf 9970335543102666798878878144799997208888854556568899999999998834999-------------
Q 003533 378 SVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP------------- 444 (812)
Q Consensus 378 s~~~~~~~~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~------------- 444 (812)
...|+|..|+..+++.++.|.+++||||||||.+|||.|++++....
T Consensus 128 --------------------~~~i~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~ 187 (396)
T 2gfo_A 128 --------------------YRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHL 187 (396)
T ss_dssp --------------------EEEECCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTS
T ss_pred --------------------CCEECHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf --------------------843778999999997454334878877599999999999999865314554455555566
Q ss_pred -----------------CCCCCCCEEEEEEEEEEE-CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf -----------------999746300588799990-79976420015335874158953355789999998777552069
Q 003533 445 -----------------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEG 506 (812)
Q Consensus 445 -----------------~~~i~~lF~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g 506 (812)
.+.+.++|+|+++++++| .|+.++.+.++|++|+|+||...
T Consensus 188 ~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------- 246 (396)
T 2gfo_A 188 DDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------- 246 (396)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSS---------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEEEECCCCCEECCCCCCEEEEECCCCCC---------------------
T ss_conf 42567789998766506883402008688777885799962032446312333266346---------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEECCCEEE
Q ss_conf 877842335898799999974149742586---33554586555438877311478159984247883794200166243
Q 003533 507 KDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYI 583 (812)
Q Consensus 507 ~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V 583 (812)
..+|++||+.|+.+|.++| |+|++|+.++.|.|+.+|.++|+||+||||||.++..| ..|+...|
T Consensus 247 -----------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~-~~K~~~~v 314 (396)
T 2gfo_A 247 -----------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTSV 314 (396)
T ss_dssp -----------EEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSS-EEECCCEE
T ss_pred -----------CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCEECCCCC-CEECCCEE
T ss_conf -----------579999999837722516876411577555453589999803785799985011025761-00167448
Q ss_pred ECCC-CCCCCCCCC
Q ss_conf 2298-545311114
Q 003533 584 DVPD-IIDISHMRS 596 (812)
Q Consensus 584 ~fP~-~LDLs~y~~ 596 (812)
.||. .|||++|+.
T Consensus 315 ~fp~~~Ldl~~~~~ 328 (396)
T 2gfo_A 315 DFPLENLDLSQYVI 328 (396)
T ss_dssp ECCSSCBCCGGGBC
T ss_pred ECCHHHCCCCCCCC
T ss_conf 54534245664334
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=361.27 Aligned_cols=239 Identities=22% Similarity=0.363 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 66799644544589940166999996147267887503784133310399999752799999999998329999970335
Q 003533 305 PLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEK 384 (812)
Q Consensus 305 p~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~ 384 (812)
+.+++|++||.|+|||||||||||+|+++|+|+++++...+..... .......++.++|.+|+..+++.
T Consensus 3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~--------- 71 (348)
T 3nhe_A 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLH--HGSNAHTALVEEFAKLIQTIWTS--------- 71 (348)
T ss_dssp ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSC--SSCCTTHHHHHHHHHHHHHHTTC---------
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHCC---------
T ss_conf 7889999778758834798899999966799999985244667614--68873118999999999999717---------
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--------------------
Q ss_conf 543102666798878878144799997208888854556568899999999998834999--------------------
Q 003533 385 DAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-------------------- 444 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-------------------- 444 (812)
.....++|..|+..+++.++.|.+++||||||||.+||+.|+++.....
T Consensus 72 -----------~~~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
T 3nhe_A 72 -----------SPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGR 140 (348)
T ss_dssp -----------CTTCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHH
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf -----------898724899999999986064079874479999999999999987530467887752224688227789
Q ss_pred ----------CCCCCCCEEEEEEEEEEE-CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ----------999746300588799990-799764200153358741589533557899999987775520698778423
Q 003533 445 ----------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEE 513 (812)
Q Consensus 445 ----------~~~i~~lF~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~ 513 (812)
.+.+.++|+|.++++++| .|++++.+.++|++|+|+||....
T Consensus 141 ~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~--------------------------- 193 (348)
T 3nhe_A 141 QMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY--------------------------- 193 (348)
T ss_dssp HHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCS---------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECCCCCC---------------------------
T ss_conf 99999875069845555124999899948999886444465477642798556---------------------------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEECCCEEEECC-CCC
Q ss_conf 35898799999974149742586---33554586555438877311478159984247883794200166243229-854
Q 003533 514 IVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP-DII 589 (812)
Q Consensus 514 ~~~~~~sL~dcL~~f~~~E~ie~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki~~~V~fP-~~L 589 (812)
+.++|++||+.|+.+|.++| |+|++|+.++.|.|+.+|.++|+||+||||||.++ .+...|+...|.|| ..|
T Consensus 194 ---~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~-~~~~~K~~~~v~fp~~~l 269 (348)
T 3nhe_A 194 ---PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSES-RIRTSKLTTFVNFPLRDL 269 (348)
T ss_dssp ---SCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCC-SSCCCBCCCCEECCSSCE
T ss_pred ---CCCCHHHHHHHHCCCEEECCCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCC-CCCEEECCCCEECCCCCC
T ss_conf ---7778999998746805716888567888888564899988132986579998753456-774145686230347758
Q ss_pred CCCCCCC
Q ss_conf 5311114
Q 003533 590 DISHMRS 596 (812)
Q Consensus 590 DLs~y~~ 596 (812)
||++|+.
T Consensus 270 dl~~~~~ 276 (348)
T 3nhe_A 270 DLREFAS 276 (348)
T ss_dssp ECGGGBC
T ss_pred CHHHHCC
T ss_conf 7766067
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=358.03 Aligned_cols=236 Identities=26% Similarity=0.375 Sum_probs=203.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 96445445899401669999961472678875037841333103999997527999999999983299999703355431
Q 003533 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (812)
Q Consensus 309 pg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (812)
.|++||.|+|||||||||||+|+++|+|+++++........ .......++.++|..++..|+++.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~---~~~~~~~~l~~~l~~l~~~l~~~~------------ 65 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV---PGGGRAQELTEAFADVIGALWHPD------------ 65 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCS------------
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHC---CCCCCHHHHHHHHHHHHHHHHCCC------------
T ss_conf 99747588982669899999986789999999725488756---789952699999999999984589------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC------------------------
Q ss_conf 02666798878878144799997208888854556568899999999998834999------------------------
Q 003533 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP------------------------ 444 (812)
Q Consensus 389 ~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~------------------------ 444 (812)
....++|..|+..+++.++.|.+++||||+|||.+||+.|+++.....
T Consensus 66 --------~~~~v~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (355)
T 3i3t_A 66 --------SCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLE 137 (355)
T ss_dssp --------SCCCBCCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC-------------------------
T ss_pred --------CCCCCCHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --------887445899999999738422898766789999999999999976541378752356766676444432235
Q ss_pred ---------------------CCCCCCCEEEEEEEEEEE-CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---------------------999746300588799990-7997642001533587415895335578999999877755
Q 003533 445 ---------------------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMER 502 (812)
Q Consensus 445 ---------------------~~~i~~lF~g~l~~~i~C-~C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~ 502 (812)
.+.+.++|+|.+.+.++| .|++++.+.++|++|+|+||.....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~--------------- 202 (355)
T 3i3t_A 138 EPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA--------------- 202 (355)
T ss_dssp ---CCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCCC---------------
T ss_conf 77788788999999985231698154533579995589389999840222234652567864445---------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEECC
Q ss_conf 2069877842335898799999974149742586---3355458655543887731147815998424788379420016
Q 003533 503 ISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKL 579 (812)
Q Consensus 503 ~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~---y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~~~~~Ki 579 (812)
.+.++|++||+.|+.+|.+++ |+|++|+.++.|+|+..|.++|+||+||||||.++ .+...|+
T Consensus 203 -------------~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~-~~~~~K~ 268 (355)
T 3i3t_A 203 -------------GGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSAS-RGSIKKS 268 (355)
T ss_dssp ----------------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECC-SSCCEEC
T ss_pred -------------CCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCCHHEEEEHHHEECC-CCCCEEC
T ss_conf -------------67658999999857835458999855988788662379988113981309976020037-8980478
Q ss_pred CEEEECC-CCCCCCCCCC
Q ss_conf 6243229-8545311114
Q 003533 580 DVYIDVP-DIIDISHMRS 596 (812)
Q Consensus 580 ~~~V~fP-~~LDLs~y~~ 596 (812)
...|.|| +.|||++|+.
T Consensus 269 ~~~v~fp~~~l~l~~~~~ 286 (355)
T 3i3t_A 269 SVGVDFPLQRLSLGDFAS 286 (355)
T ss_dssp CCCCBCCSSCEECGGGBC
T ss_pred CCCEECCCCCCCCHHHCC
T ss_conf 861607765467302115
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=355.27 Aligned_cols=234 Identities=21% Similarity=0.262 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99644544589940166999996147267887503784133310399999752799999999998329999970335543
Q 003533 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 308 gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
..+++||.|+|||||||||||+|+++|+|+++++...... .......+..++.++|++|+..|+++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~l~~lf~~l~~~------------ 76 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGAL--RASGEMASAQYITAALRDLFDSMDKT------------ 76 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC--------CHHHHHHHHHHHHHHHHHHH------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHCC------------
T ss_conf 6999886547704398999999876899999999645101--34788885438999999999998638------------
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCC-----------------
Q ss_conf 1026667988788781447999972088888------54556568899999999998834999-----------------
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFS------SMRQQDALEFFLHFVDQVERVHSGKP----------------- 444 (812)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~------~~~QQDA~EFl~~LLd~L~~~~~~~~----------------- 444 (812)
...++|..|+..+++.+|.|. +++||||||||.+||+.|++++....
T Consensus 77 ----------~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~ 146 (404)
T 2ayn_A 77 ----------SSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATP 146 (404)
T ss_dssp ----------CSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC---------------
T ss_pred ----------CCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
T ss_conf ----------9838869999999885700202356788665489999999999999874435677522100122100000
Q ss_pred ---CCCCCCCEEEEEEEEEEE-CCCCEE--EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ---999746300588799990-799764--20015335874158953355789999998777552069877842335898
Q 003533 445 ---EVDPTKSFKFGIEERISC-PSGKVA--YNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPR 518 (812)
Q Consensus 445 ---~~~i~~lF~g~l~~~i~C-~C~~vs--~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 518 (812)
.+.+.++|+|.++++++| .|+.++ .+.++|++|+|+||...
T Consensus 147 ~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~--------------------------------- 193 (404)
T 2ayn_A 147 SKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEV--------------------------------- 193 (404)
T ss_dssp ---CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSC---------------------------------
T ss_pred CCCCCHHHHHCCEEEEEEEEECCCCCCCCCEEECCCCEEEEECCCCC---------------------------------
T ss_conf 11376024515679999998257898168524225746876569985---------------------------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCC-CCEECCCEEEECCCCCCCCCCCCC
Q ss_conf 7999999741497425863355458655543887731147815998424788379-420016624322985453111148
Q 003533 519 VPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 519 ~sL~dcL~~f~~~E~ie~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
.+|.+||+.|+. |.++ ++|++|++++.++|+.+|.++|+||+||||||.++.. +...|+...|.||..|||++|+..
T Consensus 194 ~~l~~~L~~~~~-e~l~-~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 271 (404)
T 2ayn_A 194 KYLFTGLKLRLQ-EEIT-KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTP 271 (404)
T ss_dssp CBHHHHHHHTTE-ECCC-CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCH
T ss_pred CCHHHHHHHHCC-CCEE-ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECCCCCEECCCCEECCCCEEEHHHHCCH
T ss_conf 429999987544-0103-62520098301555531721997169999988982466831001744646825677674485
Q ss_pred CCC
Q ss_conf 999
Q 003533 598 GLQ 600 (812)
Q Consensus 598 g~q 600 (812)
+++
T Consensus 272 ~~~ 274 (404)
T 2ayn_A 272 ELQ 274 (404)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 554
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=350.61 Aligned_cols=229 Identities=17% Similarity=0.220 Sum_probs=198.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCC-------CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 6799644544589940166999996147267887503784133310399999-------752799999999998329999
Q 003533 306 LFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADP-------TVDLNMQLTKLAHGLLSGKYS 378 (812)
Q Consensus 306 ~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p-------~~~l~~ql~kL~~~l~sg~ys 378 (812)
...++++||.|+|||||||||||+|+++|+|+++++...... ....+ ..++.++|++|+..|+.+
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--- 90 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQ-----GVSNSGAQDEEIHKQIVIEMKRCFENLQNK--- 90 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGG-----CCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---
T ss_conf 357898887738851399999999974799999997126544-----667764334441138999999999998607---
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9703355431026667988788781447999972088888-------545565688999999999988349999997463
Q 003533 379 VPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFS-------SMRQQDALEFFLHFVDQVERVHSGKPEVDPTKS 451 (812)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~-------~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~l 451 (812)
....++|..|+..+++.+|.|. +++||||+|||.+||+.|+++... +.+.++
T Consensus 91 ------------------~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---~~i~~~ 149 (415)
T 1vjv_A 91 ------------------SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---KFSEDF 149 (415)
T ss_dssp -------------------CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---HHHTTT
T ss_pred ------------------CCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---CHHHHH
T ss_conf ------------------99843779999999875850210466777766668999999999999987343---469999
Q ss_pred EEEEEEEEEEE-CCCCEE--EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00588799990-799764--200153358741589533557899999987775520698778423358987999999741
Q 003533 452 FKFGIEERISC-PSGKVA--YNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTF 528 (812)
Q Consensus 452 F~g~l~~~i~C-~C~~vs--~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f 528 (812)
|+ .++++++| .|+.++ .+.++|++|+|+|+... .+|.+||+.|
T Consensus 150 F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~---------------------------------~~l~~~L~~~ 195 (415)
T 1vjv_A 150 RI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTT---------------------------------NFMRNGLLEG 195 (415)
T ss_dssp CE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTC---------------------------------CBHHHHHHHH
T ss_pred HH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCCCCC---------------------------------CHHHHHHHHH
T ss_conf 98-6117999779998746313545436651256661---------------------------------2389999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCC-CCEECCCEEEECCCCCCCCCCCCCCC
Q ss_conf 497425863355458655543887731147815998424788379-42001662432298545311114899
Q 003533 529 SAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGL 599 (812)
Q Consensus 529 ~~~E~ie~y~C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~g~ 599 (812)
+. |.++ ++|++|+.++.++|+.+|.++|+||+||||||.++.. +...|++..|.||..|||++|+..++
T Consensus 196 ~~-e~i~-~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~ 265 (415)
T 1vjv_A 196 LN-EKIE-KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEY 265 (415)
T ss_dssp HE-EC----------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHH
T ss_pred HH-HHHH-HCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEHHHHCCHHH
T ss_conf 44-5553-1461217864278887702699715999988998378884043167647995767678428333
No 9
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=340.36 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99644544589940166999996147267887503784133310399999752799999999998329999970335543
Q 003533 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (812)
Q Consensus 308 gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (812)
.+|++||.|+|||||||||||+|+++|+|+++++.... ....+..++.++|++++..|+.+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~-------~~~~~~~~~~~~l~~lf~~l~~~------------ 63 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT-------EGDDSSKSVPLALQRVFYELQHS------------ 63 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCC-------TTSCTTTCHHHHHHHHHHHHHHC------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHHC------------
T ss_conf 88998756474544989999999777999999983787-------77765440999999999988605------------
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEE-CCC
Q ss_conf 102666798878878144799997208888854556568899999999998834999-999746300588799990-799
Q 003533 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSG 465 (812)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~lF~g~l~~~i~C-~C~ 465 (812)
...+.|..|+..++ ++.|.+++||||||||.+||+.|+++.+... .+.+.++|+|.++++++| .|+
T Consensus 64 ----------~~~~~~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~ 131 (353)
T 1nb8_A 64 ----------DKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVD 131 (353)
T ss_dssp ----------SSCBCCHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSC
T ss_pred ----------CCCCCCHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCEEEEEEEEEECCCC
T ss_conf ----------88778779986418--877786532639999999999999884488755512350305899999925689
Q ss_pred CEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCCCCC
Q ss_conf 76420015335874158953355789999998777552069877842335898799999974149742586---335545
Q 003533 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTAL 542 (812)
Q Consensus 466 ~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~---y~C~~C 542 (812)
.++.+.++|++|+|+||.. .+|.+||+.|+.+|.+++ |.|+.|
T Consensus 132 ~~s~~~e~f~~LsL~i~~~----------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c 177 (353)
T 1nb8_A 132 YRSDRREDYYDIQLSIKGK----------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (353)
T ss_dssp CEEEEEEEESCEEECCTTC----------------------------------SBHHHHHHHHTCCEEECTTTCEECGGG
T ss_pred CEECEEEEEEEEEEEECCC----------------------------------CCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 7002222327998897997----------------------------------645779998517342478753147767
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEEEECCC-CCEECCCEEEECCCCCCCCCCCCC
Q ss_conf 8655543887731147815998424788379-420016624322985453111148
Q 003533 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 543 ~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
+ ++.|.|+.+|.++|+||+||||||.++.. |...|++..|.||+.|||++|+..
T Consensus 178 ~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~ 232 (353)
T 1nb8_A 178 G-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQK 232 (353)
T ss_dssp C-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSS
T ss_pred C-CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECCCEEEHHHHHCC
T ss_conf 5-175689888400997259998367984235950755828977976652352213
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=336.94 Aligned_cols=228 Identities=19% Similarity=0.288 Sum_probs=195.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 56679964454458994016699999614726788750378413331039999975279999999999832999997033
Q 003533 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQE 383 (812)
Q Consensus 304 ~p~~gpg~~GL~NLGNTCYlNSVLQ~L~~ip~f~~~~~~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~ 383 (812)
.+...+|++||.|+|||||||||||+|+++|+|+++++.... ....+..++.++|++++..|+.+
T Consensus 168 ~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~-------~~~~~~~~~~~~l~~lf~~l~~~-------- 232 (522)
T 2f1z_A 168 DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT-------EGDDSSKSVPLALQRVFYELQHS-------- 232 (522)
T ss_dssp CTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCC-------CSSCTTTCHHHHHHHHHHHHHHC--------
T ss_pred CCCCCCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-------CCCCCCCHHHHHHHHHHHHHHCC--------
T ss_conf 765567854411386318888999998612999999960665-------67765652899999999998637--------
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEE
Q ss_conf 5543102666798878878144799997208888854556568899999999998834999-999746300588799990
Q 003533 384 KDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC 462 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~I~P~~fk~~i~~~~p~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~lF~g~l~~~i~C 462 (812)
...+.|..|+..++ ++.|.+++||||+|||.+||+.|+++.+... .+.+.++|+|+++++++|
T Consensus 233 --------------~~~~~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C 296 (522)
T 2f1z_A 233 --------------DKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQC 296 (522)
T ss_dssp --------------SSCBCCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECC
T ss_pred --------------CCCCCCHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEEEEEC
T ss_conf --------------98557678886418--76578762646999999999999864158865660213133799998872
Q ss_pred -CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CC
Q ss_conf -79976420015335874158953355789999998777552069877842335898799999974149742586---33
Q 003533 463 -PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FY 538 (812)
Q Consensus 463 -~C~~vs~~~e~~~~LsL~Ip~~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~dcL~~f~~~E~ie~---y~ 538 (812)
.|+.++.+.++|++|+|+||.. .+|.+||+.|+.+|.+++ |.
T Consensus 297 ~~C~~~s~~~e~f~~LsL~i~~~----------------------------------~~l~~~L~~~~~~E~l~~~n~~~ 342 (522)
T 2f1z_A 297 KEVDYRSDRREDYYDIQLSIKGK----------------------------------KNIFESFVDYVAVEQLDGDNKYD 342 (522)
T ss_dssp SSSCCCCCEEEEESCEEECCTTC----------------------------------CBHHHHHHHHTCEEEECTTSCBC
T ss_pred CCCCCEEEEEEEEEEEEEEECCC----------------------------------CCCHHHHHHHHCEEECCCCCEEE
T ss_conf 78995553663207898884786----------------------------------44067998740502227762040
Q ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCC-CCEECCCEEEECCCCCCCCCCCCC
Q ss_conf 55458655543887731147815998424788379-420016624322985453111148
Q 003533 539 STALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (812)
Q Consensus 539 C~~C~~~~~a~K~~~i~~lP~vLiIhLkRF~~~~~-~~~~Ki~~~V~fP~~LDLs~y~~~ 597 (812)
|+.|+ ++.|.|+.+|.++|+||+||||||.++.. +...|++..|.||+.|||++|+..
T Consensus 343 C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~ 401 (522)
T 2f1z_A 343 AGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQK 401 (522)
T ss_dssp CGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSS
T ss_pred CCCCC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECCCEECCHHHHCC
T ss_conf 47677-653679999341996389998747881667852676827967881344354054
Done!