Query 003535
Match_columns 812
No_of_seqs 279 out of 780
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 17:28:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003535.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1586-1590//hhsearch_pdb/003535hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dip_A Zinc finger SWIM domain 1.0 1 1 109.6 4.5 56 372-427 24-80 (98)
2 1wmh_B Partitioning defective- 1.0 1 1 109.6 10.0 83 2-89 4-86 (86)
3 2ktr_A Sequestosome-1; autopha 1.0 1 1 108.0 11.5 87 1-89 18-117 (117)
4 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 107.9 11.2 85 4-89 5-102 (102)
5 2fc7_A ZZZ3 protein; structure 1.0 1 1 105.4 5.0 58 370-427 12-78 (82)
6 1vd2_A Protein kinase C, IOTA 1.0 1 1 103.6 10.9 80 3-88 5-88 (89)
7 2e5r_A Dystrobrevin alpha; ZZ 1.0 1 1 100.2 5.1 53 371-424 4-62 (63)
8 1tot_A CREB-binding protein; z 1.0 1 1 87.5 3.8 49 376-426 3-51 (52)
9 1wj6_A KIAA0049 protein, RSGI 1.0 1 1 85.5 8.9 81 1-88 11-94 (101)
10 2bkf_A Zinc-finger protein NBR 1.0 1 1 85.3 11.6 81 1-88 3-86 (87)
No 1
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=109.62 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=49.7
Q ss_pred CCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHHCC-CCCCCEEEECCCCC
Q ss_conf 677422823438999988432301027889971014666307-99874478427877
Q 003535 372 LMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-GSEADYIRIDRPVH 427 (812)
Q Consensus 372 ~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~a~~-~~~H~f~ki~~Pv~ 427 (812)
...++|+|+.||+|++.||.|.||||++|+|||||+.||... |..|.|+++.+|..
T Consensus 24 ~~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~~~~ 80 (98)
T 2dip_A 24 ERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQ 80 (98)
T ss_dssp SCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 465416987986988887306757888799930788977469878898168168888
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=109.55 Aligned_cols=83 Identities=24% Similarity=0.395 Sum_probs=71.6
Q ss_pred CCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCE
Q ss_conf 86239999829811245501378877545588899999987188999960799752899969972854599999821843
Q 003535 2 ESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (812)
Q Consensus 2 ~~~~viKvk~gd~lRRf~i~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~ikY~DeDGD~VTL~Dd~DL~~a~~q~l~~ 81 (812)
++.+.||+||+.++|||++.-+. ...+..|..+++++|+|. +.+|+|+|+|+|||+|+|.+|++|..|+...--+
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~----~~~fe~f~~lv~~lh~L~-~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~pl 78 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRAS----VSGFQEFSRLLRAVHQIP-GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPP 78 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGG----CCCHHHHHHHHHHHTTCT-TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSC
T ss_pred CCEEEEEEECCCEEEEEECCCCC----CCCHHHHHHHHHHHCCCC-CCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 88799986338804676726887----878899999999975789-9878999988999976145889999999728874
Q ss_pred EEEEEEEC
Q ss_conf 89999964
Q 003535 82 LRIDVHLN 89 (812)
Q Consensus 82 LritV~l~ 89 (812)
|||.|+.+
T Consensus 79 LRl~Iqrk 86 (86)
T 1wmh_B 79 LRLLVQKR 86 (86)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
T ss_conf 79999719
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=107.96 Aligned_cols=87 Identities=22% Similarity=0.355 Sum_probs=71.0
Q ss_pred CCCCEEEEEEEC------CCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf 986239999829------81124550137887754-----55888999999871-8899996079975289996997285
Q 003535 1 MESTMVIKVKYG------DTLRRFNARVDENEKLD-----LDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDD 68 (812)
Q Consensus 1 m~~~~viKvk~g------d~lRRf~i~~~~n~~~d-----l~~~~L~~ki~~~F-~l~~d~~~~ikY~DeDGD~VTL~Dd 68 (812)
|.+ ++|||.|. +.+|||.++++.+..++ .++..|++||+++| +|. ..+|+|+|+|||||+|||.+|
T Consensus 18 ~~~-l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGS-LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --C-EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSH
T ss_pred CCC-EEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCEEEECCH
T ss_conf 452-899999806777887279988426777431124567779999999999734558-983899999899998976388
Q ss_pred HHHHHHHHH-CCCEEEEEEEEC
Q ss_conf 459999982-184389999964
Q 003535 69 DDLCDVMRQ-RLKFLRIDVHLN 89 (812)
Q Consensus 69 ~DL~~a~~q-~l~~LritV~l~ 89 (812)
++|..|+.. +..+|||.|+-+
T Consensus 96 eEL~~Al~~~~~~~lRlyVkek 117 (117)
T 2ktr_A 96 EELTMAMSYVKDDIFRIYIKEK 117 (117)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEEEEC
T ss_conf 9999999833788189999829
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=107.85 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=69.0
Q ss_pred CEEEEEEE------CCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCEEEECCCHHH
Q ss_conf 23999982------981124550137887754-----55888999999871-8899996079975289996997285459
Q 003535 4 TMVIKVKY------GDTLRRFNARVDENEKLD-----LDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDDDDL 71 (812)
Q Consensus 4 ~~viKvk~------gd~lRRf~i~~~~n~~~d-----l~~~~L~~ki~~~F-~l~~d~~~~ikY~DeDGD~VTL~Dd~DL 71 (812)
.++|||.| ++++|||.++++++...+ .++..|++||+++| +|. ..+|+|+|+|||||+|||.+|++|
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~-~~~f~l~Y~DedGDlItiSsDeEL 83 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSDEEL 83 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSHHHH
T ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCEEEECCHHHH
T ss_conf 6999999816777787269988336777542224466669999999999754457-983899999899998976488999
Q ss_pred HHHHHH-CCCEEEEEEEEC
Q ss_conf 999982-184389999964
Q 003535 72 CDVMRQ-RLKFLRIDVHLN 89 (812)
Q Consensus 72 ~~a~~q-~l~~LritV~l~ 89 (812)
..|+.. +...|||.|+-+
T Consensus 84 ~~Al~~~~~~~lRlyVke~ 102 (102)
T 2kkc_A 84 TMAMSYVKDDIFRIYIKEK 102 (102)
T ss_dssp HHHHHHCCSSEEEEEEEEC
T ss_pred HHHHHHCCCCEEEEEEECC
T ss_conf 9999715887599999729
No 5
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=105.38 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=51.0
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCEEECCCCCC---CCHHHHHHHC------CCCCCCEEEECCCCC
Q ss_conf 866774228234389999884323010278899---7101466630------799874478427877
Q 003535 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDD---YDLCSICFAA------MGSEADYIRIDRPVH 427 (812)
Q Consensus 370 ~~~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~D---yDLC~~C~a~------~~~~H~f~ki~~Pv~ 427 (812)
.....++|.++.||+|++.||+|.||||++|+| ||||+.||.. |.+.|.|..|.+|..
T Consensus 12 ~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~ 78 (82)
T 2fc7_A 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSG 78 (82)
T ss_dssp SSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCC
T ss_pred CCCCCCEECCCCCCCCCCCCCEECEEECCCCCCCCCEECHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 2556876586898798787566033789808798660517888748566688899999888608889
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=103.63 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=69.5
Q ss_pred CCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHHHHHHH----HC
Q ss_conf 62399998298112455013788775455888999999871889999607997528999699728545999998----21
Q 003535 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QR 78 (812)
Q Consensus 3 ~~~viKvk~gd~lRRf~i~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~ikY~DeDGD~VTL~Dd~DL~~a~~----q~ 78 (812)
+.+.||+.|+||+|||.++. ++++..|.+||+.+|++..+..|++||+||+||.|||.+|.||..|+. .+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~------~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT------TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CEEEEEEEECCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 71899999478599998799------989999999999996889898279999989979503348899999999987057
Q ss_pred CCEEEEEEEE
Q ss_conf 8438999996
Q 003535 79 LKFLRIDVHL 88 (812)
Q Consensus 79 l~~LritV~l 88 (812)
-.-|.|-|+.
T Consensus 79 ~~~l~ihvf~ 88 (89)
T 1vd2_A 79 DSELLIHVFP 88 (89)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEEEECC
T ss_conf 8778999736
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=100.18 Aligned_cols=53 Identities=25% Similarity=0.568 Sum_probs=45.8
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHHC------CCCCCCEEEECC
Q ss_conf 667742282343899998843230102788997101466630------799874478427
Q 003535 371 ALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (812)
Q Consensus 371 ~~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~f~ki~~ 424 (812)
+...+.|. +.||+|++.||.|.||||++|+|||||+.||.. |...|+|.+|.+
T Consensus 4 ~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 4 GSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CCCCCEEC-CCCCCCCCCCEECCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEC
T ss_conf 76886117-899299886263523883679984147888868776799999878899857
No 8
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=87.48 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=43.4
Q ss_pred CCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 228234389999884323010278899710146663079987447842787
Q 003535 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV 426 (812)
Q Consensus 376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~a~~~~~H~f~ki~~Pv 426 (812)
-|.++.||+|+. .| |.||||++|+|||||..||....+.|.|.+|..++
T Consensus 3 ~~~~~~Cd~C~~-~i-g~R~~C~~C~dyDLC~~C~~~~~H~H~m~~~~~~l 51 (52)
T 1tot_A 3 DRFVYTCNECKH-HV-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGL 51 (52)
T ss_dssp CSSCEEETTTTE-EE-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSC
T ss_pred CCCEEECCCCCC-CC-CCEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 837889989889-88-45478489998534999983799888648836888
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=85.53 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=69.8
Q ss_pred CCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHHHHHH---HH
Q ss_conf 986239999829811245501378877545588899999987188999960799752899969972854599999---82
Q 003535 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (812)
Q Consensus 1 m~~~~viKvk~gd~lRRf~i~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~ikY~DeDGD~VTL~Dd~DL~~a~---~q 77 (812)
|+-.+++||.|.|+.+||.+.-.. +.++..|..|+...|+|. +|+|||.|||||.|+|..+.++.+|+ ..
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~----~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPE----NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTT----TSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCEEEEEECCCC----CCCHHHHHHHHHHHCCCC---CEEEEEECCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 476189999976970589845777----898999999999873887---1589986489998888458999999987515
Q ss_pred CCCEEEEEEEE
Q ss_conf 18438999996
Q 003535 78 RLKFLRIDVHL 88 (812)
Q Consensus 78 ~l~~LritV~l 88 (812)
..+.|++.|+.
T Consensus 84 ~~n~L~m~V~~ 94 (101)
T 1wj6_A 84 QGNQLQMQVHE 94 (101)
T ss_dssp HTSEEEEECCB
T ss_pred CCCEEEEEEEE
T ss_conf 99899999961
No 10
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=1.00 E-value=1 Score=85.30 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=70.2
Q ss_pred CCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHHHHHH---HH
Q ss_conf 986239999829811245501378877545588899999987188999960799752899969972854599999---82
Q 003535 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (812)
Q Consensus 1 m~~~~viKvk~gd~lRRf~i~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~ikY~DeDGD~VTL~Dd~DL~~a~---~q 77 (812)
|+..+++||.|.|+.+||.+.-.. +.++..|..|+...|+|. +|.|||.|||||.|+|.++.++.+|+ ..
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~~----~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDPE----NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCGG----GCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCEEEEEECCCC----CCCHHHHHHHHHHHCCCC---CEEEEEECCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 776089999976970589845677----898999999999873887---1589987489988888558999999987415
Q ss_pred CCCEEEEEEEE
Q ss_conf 18438999996
Q 003535 78 RLKFLRIDVHL 88 (812)
Q Consensus 78 ~l~~LritV~l 88 (812)
..+.|++.|..
T Consensus 76 ~~n~L~m~v~~ 86 (87)
T 2bkf_A 76 QGNQLQMQVHE 86 (87)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEEEC
T ss_conf 99899999855
Done!