Query 003536
Match_columns 812
No_of_seqs 221 out of 1331
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 4E-199 9E-204 1731.4 69.4 773 1-812 1-785 (977)
2 PRK14098 glycogen synthase; Pr 100.0 2.7E-50 5.8E-55 454.1 28.4 293 509-812 3-313 (489)
3 PRK14099 glycogen synthase; Pr 100.0 6.3E-50 1.4E-54 450.6 27.5 287 509-812 1-301 (485)
4 TIGR02095 glgA glycogen/starch 100.0 1.2E-47 2.5E-52 426.8 28.6 289 512-812 1-297 (473)
5 PRK00654 glgA glycogen synthas 100.0 2.4E-47 5.2E-52 425.3 26.2 281 512-812 1-288 (466)
6 PLN02316 synthase/transferase 100.0 3.2E-47 6.9E-52 454.8 25.7 323 440-812 505-846 (1036)
7 COG0297 GlgA Glycogen synthase 100.0 2E-46 4.4E-51 421.6 23.5 288 512-812 1-300 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 3.4E-44 7.4E-49 396.4 29.2 292 513-812 1-302 (476)
9 PF08323 Glyco_transf_5: Starc 100.0 4.4E-45 9.5E-50 378.5 15.9 225 513-748 1-244 (245)
10 cd04299 GT1_Glycogen_Phosphory 100.0 9E-39 2E-43 375.6 30.0 352 441-812 23-484 (778)
11 TIGR02094 more_P_ylases alpha- 100.0 9.3E-38 2E-42 360.1 25.1 294 514-812 1-395 (601)
12 TIGR02470 sucr_synth sucrose s 99.7 6.1E-16 1.3E-20 183.4 20.8 276 490-812 238-556 (784)
13 TIGR02472 sucr_P_syn_N sucrose 99.7 4.8E-15 1E-19 164.9 21.8 198 527-769 25-226 (439)
14 TIGR02468 sucrsPsyn_pln sucros 99.7 2.5E-15 5.5E-20 181.7 21.0 237 506-769 164-444 (1050)
15 TIGR03449 mycothiol_MshA UDP-N 99.6 1.1E-14 2.3E-19 157.7 17.5 198 514-769 1-204 (405)
16 cd03793 GT1_Glycogen_synthase_ 99.6 7.5E-15 1.6E-19 168.8 16.9 233 514-770 4-266 (590)
17 PRK10307 putative glycosyl tra 99.6 1.3E-13 2.8E-18 150.7 20.3 208 512-769 1-211 (412)
18 COG0058 GlgP Glucan phosphoryl 99.6 2.5E-14 5.4E-19 167.7 15.4 363 435-812 22-493 (750)
19 TIGR02149 glgA_Coryne glycogen 99.6 1.2E-13 2.6E-18 147.6 18.4 185 512-769 1-186 (388)
20 PLN00142 sucrose synthase 99.5 5E-14 1.1E-18 167.6 16.0 274 490-812 262-579 (815)
21 PF13439 Glyco_transf_4: Glyco 99.5 2E-13 4.3E-18 127.9 12.2 174 517-766 3-176 (177)
22 cd03800 GT1_Sucrose_synthase T 99.5 1.1E-12 2.4E-17 139.3 18.5 201 513-771 1-206 (398)
23 PF13579 Glyco_trans_4_4: Glyc 99.5 2.4E-13 5.2E-18 125.3 11.5 160 528-760 1-160 (160)
24 PLN02871 UDP-sulfoquinovose:DA 99.5 1.1E-12 2.3E-17 147.0 17.6 192 508-770 55-247 (465)
25 cd03796 GT1_PIG-A_like This fa 99.4 2.7E-12 5.9E-17 140.1 15.8 184 513-771 1-187 (398)
26 cd04962 GT1_like_5 This family 99.4 1E-11 2.2E-16 131.2 18.8 184 512-771 1-184 (371)
27 PRK10125 putative glycosyl tra 99.3 1.7E-11 3.7E-16 136.3 13.3 205 512-766 1-226 (405)
28 cd03819 GT1_WavL_like This fam 99.3 2E-10 4.3E-15 120.3 18.6 161 523-769 5-165 (355)
29 cd03802 GT1_AviGT4_like This f 99.3 1.2E-10 2.5E-15 121.0 16.4 165 512-769 1-167 (335)
30 cd04951 GT1_WbdM_like This fam 99.2 3.4E-10 7.4E-15 118.1 17.3 170 513-769 1-171 (360)
31 cd04300 GT1_Glycogen_Phosphory 99.2 2.7E-10 5.8E-15 135.6 17.4 287 523-812 102-536 (797)
32 cd03805 GT1_ALG2_like This fam 99.2 1.8E-10 3.9E-15 123.5 12.2 194 512-769 1-196 (392)
33 cd03807 GT1_WbnK_like This fam 99.1 1.2E-09 2.5E-14 111.7 16.6 175 513-769 1-176 (365)
34 cd04955 GT1_like_6 This family 99.1 1.1E-09 2.5E-14 114.6 15.9 178 513-768 1-180 (363)
35 cd03818 GT1_ExpC_like This fam 99.1 2.4E-09 5.3E-14 116.9 18.5 191 513-770 1-195 (396)
36 PRK14985 maltodextrin phosphor 99.1 5.9E-10 1.3E-14 132.4 14.0 196 612-812 257-535 (798)
37 cd03812 GT1_CapH_like This fam 99.1 2.8E-09 6.1E-14 111.8 17.1 175 513-769 1-176 (358)
38 cd03795 GT1_like_4 This family 99.1 1.6E-09 3.5E-14 113.0 15.0 177 513-769 1-177 (357)
39 cd03794 GT1_wbuB_like This fam 99.1 1.6E-09 3.4E-14 111.4 13.9 205 513-770 1-206 (394)
40 cd03825 GT1_wcfI_like This fam 99.1 2E-09 4.3E-14 112.7 14.4 169 512-770 1-177 (365)
41 cd03821 GT1_Bme6_like This fam 99.1 5.1E-09 1.1E-13 107.5 17.1 187 513-769 1-188 (375)
42 cd03817 GT1_UGDG_like This fam 99.1 2.8E-09 6E-14 109.7 15.0 185 513-770 1-188 (374)
43 TIGR02093 P_ylase glycogen/sta 99.1 7.2E-10 1.6E-14 131.7 12.0 198 612-812 252-533 (794)
44 cd03792 GT1_Trehalose_phosphor 99.0 3.7E-09 8E-14 114.1 15.2 39 513-555 1-39 (372)
45 PRK14986 glycogen phosphorylas 99.0 1.3E-09 2.7E-14 130.0 12.5 187 623-812 286-549 (815)
46 PRK00726 murG undecaprenyldiph 99.0 1.4E-08 3E-13 109.2 18.7 166 511-769 1-171 (357)
47 cd03801 GT1_YqgM_like This fam 99.0 1.7E-08 3.8E-13 102.0 17.4 184 513-768 1-184 (374)
48 TIGR03088 stp2 sugar transfera 99.0 1.4E-08 3.1E-13 108.9 16.0 175 511-769 1-177 (374)
49 PRK15484 lipopolysaccharide 1, 98.9 1.5E-08 3.2E-13 111.3 16.1 172 513-770 4-179 (380)
50 cd03809 GT1_mtfB_like This fam 98.9 1.4E-08 3E-13 105.3 14.4 182 513-770 1-182 (365)
51 cd03799 GT1_amsK_like This is 98.9 2.9E-08 6.3E-13 103.5 15.3 171 513-769 1-171 (355)
52 PF09314 DUF1972: Domain of un 98.9 6.5E-08 1.4E-12 98.4 17.2 181 511-762 1-185 (185)
53 cd03823 GT1_ExpE7_like This fa 98.9 3.6E-08 7.9E-13 101.4 14.9 43 513-556 1-43 (359)
54 cd03798 GT1_wlbH_like This fam 98.9 8.7E-08 1.9E-12 97.7 17.1 189 514-770 1-189 (377)
55 cd03814 GT1_like_2 This family 98.8 7E-08 1.5E-12 99.8 16.1 184 513-771 1-184 (364)
56 cd03816 GT1_ALG1_like This fam 98.8 3.8E-08 8.2E-13 109.4 14.0 190 511-769 3-199 (415)
57 PF05693 Glycogen_syn: Glycoge 98.8 9.5E-09 2.1E-13 118.9 9.4 214 517-767 2-258 (633)
58 TIGR01133 murG undecaprenyldip 98.8 1.2E-07 2.6E-12 100.6 16.9 163 512-768 1-166 (348)
59 cd03785 GT1_MurG MurG is an N- 98.8 1.7E-07 3.6E-12 99.6 17.6 160 527-768 9-168 (350)
60 cd03822 GT1_ecORF704_like This 98.8 1E-07 2.2E-12 98.9 15.7 171 513-769 1-173 (366)
61 cd03811 GT1_WabH_like This fam 98.7 1.4E-07 3.1E-12 95.5 14.1 176 513-770 1-177 (353)
62 PRK09922 UDP-D-galactose:(gluc 98.7 8.8E-08 1.9E-12 103.5 12.7 167 512-766 1-170 (359)
63 PLN02846 digalactosyldiacylgly 98.7 3.9E-08 8.4E-13 112.2 10.3 46 510-557 3-49 (462)
64 cd05844 GT1_like_7 Glycosyltra 98.7 8.8E-08 1.9E-12 101.3 11.7 102 638-769 80-182 (367)
65 PF13477 Glyco_trans_4_2: Glyc 98.7 6.6E-07 1.4E-11 83.4 16.1 138 513-732 1-139 (139)
66 PRK15427 colanic acid biosynth 98.7 1.9E-07 4.1E-12 103.9 14.1 99 638-769 116-214 (406)
67 cd03808 GT1_cap1E_like This fa 98.7 5.6E-07 1.2E-11 91.7 16.2 180 513-770 1-181 (359)
68 PRK15179 Vi polysaccharide bio 98.7 1.5E-05 3.3E-10 95.3 30.3 89 389-486 91-192 (694)
69 cd03820 GT1_amsD_like This fam 98.7 4.5E-07 9.8E-12 91.9 14.4 172 513-769 1-173 (348)
70 KOG1111 N-acetylglucosaminyltr 98.6 9.6E-08 2.1E-12 104.8 7.5 182 512-769 1-186 (426)
71 PF00343 Phosphorylase: Carboh 98.5 1.5E-06 3.2E-11 103.1 14.0 145 623-768 187-376 (713)
72 PLN02275 transferase, transfer 98.3 5.7E-06 1.2E-10 90.7 13.6 184 528-769 15-202 (371)
73 PF00862 Sucrose_synth: Sucros 98.2 8.5E-05 1.9E-09 85.2 19.1 235 490-772 255-533 (550)
74 TIGR03087 stp1 sugar transfera 98.2 1.8E-06 3.9E-11 94.7 5.1 110 639-769 103-213 (397)
75 PRK15490 Vi polysaccharide bio 98.1 5.2E-05 1.1E-09 88.7 14.6 102 629-770 271-380 (578)
76 cd03813 GT1_like_3 This family 97.8 2.6E-05 5.5E-10 88.6 6.8 111 638-769 171-284 (475)
77 cd03806 GT1_ALG11_like This fa 97.8 9.8E-05 2.1E-09 82.8 10.8 205 521-768 6-228 (419)
78 PRK13609 diacylglycerol glucos 97.8 0.00039 8.5E-09 75.9 14.9 43 510-557 3-45 (380)
79 PLN02605 monogalactosyldiacylg 97.7 0.00018 3.8E-09 79.3 10.5 62 723-811 149-211 (382)
80 cd01635 Glycosyltransferase_GT 97.6 0.00038 8.2E-09 67.3 9.8 37 514-552 1-37 (229)
81 TIGR02169 SMC_prok_A chromosom 97.4 0.067 1.4E-06 66.7 28.5 54 132-185 675-728 (1164)
82 PLN02501 digalactosyldiacylgly 97.4 0.002 4.4E-08 77.2 14.5 55 384-442 175-229 (794)
83 cd03788 GT1_TPS Trehalose-6-Ph 97.4 0.00076 1.6E-08 77.0 10.1 103 639-769 130-244 (460)
84 PF15070 GOLGA2L5: Putative go 97.4 0.023 5.1E-07 67.7 22.6 193 170-406 19-227 (617)
85 PRK02224 chromosome segregatio 97.3 0.074 1.6E-06 65.3 27.2 34 157-190 188-223 (880)
86 PRK02224 chromosome segregatio 97.3 0.099 2.1E-06 64.2 28.2 119 245-366 414-553 (880)
87 TIGR00606 rad50 rad50. This fa 97.3 0.078 1.7E-06 68.3 28.3 140 133-313 767-906 (1311)
88 TIGR02168 SMC_prok_B chromosom 97.3 0.1 2.2E-06 64.8 28.2 17 353-369 968-984 (1179)
89 PHA02562 46 endonuclease subun 97.3 0.05 1.1E-06 63.1 23.8 62 246-307 216-281 (562)
90 TIGR02168 SMC_prok_B chromosom 97.2 0.2 4.3E-06 62.3 29.7 58 131-188 670-727 (1179)
91 TIGR02169 SMC_prok_A chromosom 97.2 0.14 3E-06 63.9 27.3 36 385-420 955-990 (1164)
92 KOG0933 Structural maintenance 97.1 0.045 9.8E-07 67.2 20.8 244 156-445 674-922 (1174)
93 PRK03918 chromosome segregatio 97.1 0.26 5.6E-06 60.4 27.8 21 409-429 455-475 (880)
94 PRK00025 lpxB lipid-A-disaccha 97.0 0.013 2.9E-07 63.7 14.1 37 511-554 1-37 (380)
95 PF07888 CALCOCO1: Calcium bin 96.9 0.16 3.5E-06 59.7 23.4 180 247-429 203-405 (546)
96 TIGR00606 rad50 rad50. This fa 96.9 0.21 4.5E-06 64.5 25.7 166 249-425 791-960 (1311)
97 cd03804 GT1_wbaZ_like This fam 96.9 0.0028 6.2E-08 67.7 7.8 47 717-770 146-192 (351)
98 COG1196 Smc Chromosome segrega 96.8 1.9 4.2E-05 55.3 33.2 57 133-189 669-725 (1163)
99 PF00038 Filament: Intermediat 96.7 0.55 1.2E-05 50.9 24.3 207 161-428 63-277 (312)
100 PF11897 DUF3417: Protein of u 96.7 0.0025 5.5E-08 61.0 5.6 66 441-521 39-112 (118)
101 KOG4643 Uncharacterized coiled 96.7 0.34 7.4E-06 59.9 24.1 186 249-441 263-504 (1195)
102 cd04946 GT1_AmsK_like This fam 96.6 0.0054 1.2E-07 68.5 8.3 97 638-768 125-223 (407)
103 PRK05749 3-deoxy-D-manno-octul 96.6 0.087 1.9E-06 58.8 17.6 90 632-760 118-208 (425)
104 PF12000 Glyco_trans_4_3: Gkyc 96.6 0.016 3.5E-07 58.8 10.7 42 718-766 129-170 (171)
105 PRK03918 chromosome segregatio 96.6 1.4 3.1E-05 54.1 29.0 10 670-679 845-854 (880)
106 KOG0161 Myosin class II heavy 96.4 0.42 9E-06 63.4 23.9 135 278-420 1762-1896(1930)
107 COG1196 Smc Chromosome segrega 96.4 4.3 9.3E-05 52.3 32.2 11 544-554 1048-1058(1163)
108 KOG0161 Myosin class II heavy 96.3 1.7 3.7E-05 58.0 28.9 115 243-367 978-1114(1930)
109 KOG0971 Microtubule-associated 96.3 2 4.3E-05 53.1 26.7 203 197-451 339-572 (1243)
110 PRK11637 AmiB activator; Provi 96.3 0.41 8.8E-06 54.6 20.6 84 130-216 46-129 (428)
111 TIGR00236 wecB UDP-N-acetylglu 96.2 0.021 4.7E-07 62.2 9.9 97 628-763 76-176 (365)
112 PLN02949 transferase, transfer 96.2 0.13 2.9E-06 59.3 16.5 43 509-555 31-76 (463)
113 PF07888 CALCOCO1: Calcium bin 96.2 1.6 3.4E-05 51.8 25.2 17 403-419 421-437 (546)
114 PF10174 Cast: RIM-binding pro 96.2 0.77 1.7E-05 56.5 23.4 257 157-424 112-389 (775)
115 KOG0996 Structural maintenance 96.1 1.9 4.1E-05 54.6 26.2 61 115-177 240-306 (1293)
116 TIGR02400 trehalose_OtsA alpha 95.9 0.009 2E-07 68.6 5.3 113 625-769 116-239 (456)
117 TIGR03185 DNA_S_dndD DNA sulfu 95.9 0.94 2E-05 54.5 22.2 44 266-309 375-419 (650)
118 PRK01156 chromosome segregatio 95.8 3 6.4E-05 51.9 26.8 39 388-426 594-632 (895)
119 PHA02562 46 endonuclease subun 95.8 2.3 5E-05 49.5 24.5 23 288-310 330-352 (562)
120 PRK12446 undecaprenyldiphospho 95.7 0.74 1.6E-05 51.2 19.1 29 528-556 9-40 (352)
121 PF00261 Tropomyosin: Tropomyo 95.7 3.5 7.6E-05 43.7 25.6 74 142-215 12-85 (237)
122 PHA01630 putative group 1 glyc 95.7 0.013 2.9E-07 64.4 5.2 82 649-769 52-135 (331)
123 PHA01633 putative glycosyl tra 95.7 0.22 4.8E-06 55.5 14.6 38 512-555 1-38 (335)
124 PF12128 DUF3584: Protein of u 95.6 4 8.7E-05 52.7 27.5 100 245-346 322-422 (1201)
125 PRK04778 septation ring format 95.6 2.3 5E-05 50.6 23.7 156 247-406 314-473 (569)
126 PF15070 GOLGA2L5: Putative go 95.6 3.8 8.3E-05 49.5 25.2 242 147-431 24-304 (617)
127 cd03786 GT1_UDP-GlcNAc_2-Epime 95.6 0.075 1.6E-06 57.2 10.3 98 627-764 77-177 (363)
128 KOG0996 Structural maintenance 95.5 0.94 2E-05 57.1 20.1 86 130-215 784-876 (1293)
129 TIGR03185 DNA_S_dndD DNA sulfu 95.3 3.4 7.3E-05 49.9 23.8 28 343-370 391-418 (650)
130 PF09726 Macoilin: Transmembra 95.3 1.3 2.8E-05 54.1 20.2 94 201-305 422-519 (697)
131 TIGR00215 lpxB lipid-A-disacch 95.2 0.15 3.3E-06 57.1 11.7 88 629-761 80-167 (385)
132 KOG4673 Transcription factor T 95.2 1.6 3.4E-05 52.6 19.7 103 318-426 543-657 (961)
133 KOG4674 Uncharacterized conser 95.1 4 8.7E-05 54.1 24.8 176 247-431 1001-1203(1822)
134 PRK04778 septation ring format 95.0 9.9 0.00021 45.4 26.3 298 117-427 65-394 (569)
135 PF12718 Tropomyosin_1: Tropom 94.9 0.73 1.6E-05 45.6 14.1 95 313-407 1-99 (143)
136 KOG4674 Uncharacterized conser 94.9 9.8 0.00021 50.8 27.1 262 127-427 1208-1487(1822)
137 KOG0612 Rho-associated, coiled 94.8 7.3 0.00016 49.9 24.9 110 296-406 582-692 (1317)
138 PF12128 DUF3584: Protein of u 94.8 16 0.00035 47.4 29.0 52 131-182 614-665 (1201)
139 PRK04863 mukB cell division pr 94.6 8.3 0.00018 51.1 26.0 58 370-431 431-488 (1486)
140 PF06160 EzrA: Septation ring 94.6 4.7 0.0001 48.0 22.1 293 117-430 61-393 (560)
141 PF05622 HOOK: HOOK protein; 94.5 0.01 2.3E-07 71.6 0.0 203 160-397 201-407 (713)
142 KOG0980 Actin-binding protein 94.5 18 0.00039 45.2 27.1 124 169-337 361-484 (980)
143 KOG0964 Structural maintenance 94.4 5.9 0.00013 49.6 22.5 205 129-346 676-902 (1200)
144 KOG3742 Glycogen synthase [Car 94.4 0.0083 1.8E-07 68.3 -0.9 110 641-768 175-290 (692)
145 PF10174 Cast: RIM-binding pro 94.4 3.5 7.6E-05 51.0 21.0 163 245-431 324-490 (775)
146 PF15294 Leu_zip: Leucine zipp 94.3 5.4 0.00012 43.9 19.9 87 243-340 125-211 (278)
147 COG0419 SbcC ATPase involved i 94.3 13 0.00029 46.6 26.1 106 262-367 272-378 (908)
148 KOG0976 Rho/Rac1-interacting s 94.2 10 0.00022 46.8 23.3 88 166-274 120-207 (1265)
149 PF05557 MAD: Mitotic checkpoi 94.2 0.46 1E-05 57.8 13.0 161 244-425 462-643 (722)
150 PRK09039 hypothetical protein; 94.1 1 2.2E-05 50.5 14.4 41 248-298 65-105 (343)
151 PF05701 WEMBL: Weak chloropla 94.0 17 0.00036 43.2 25.2 47 132-178 35-81 (522)
152 cd04949 GT1_gtfA_like This fam 94.0 0.12 2.7E-06 55.6 6.9 100 639-769 98-197 (372)
153 PRK11637 AmiB activator; Provi 93.9 4 8.7E-05 46.7 19.1 15 203-217 123-137 (428)
154 KOG4643 Uncharacterized coiled 93.9 20 0.00042 45.5 25.4 114 306-420 395-520 (1195)
155 PRK13608 diacylglycerol glucos 93.9 0.29 6.4E-06 54.6 9.8 37 510-551 4-43 (391)
156 PF05557 MAD: Mitotic checkpoi 93.8 0.017 3.8E-07 69.8 0.0 162 262-427 286-468 (722)
157 cd04950 GT1_like_1 Glycosyltra 93.8 0.26 5.6E-06 54.3 9.1 92 637-769 99-190 (373)
158 KOG0994 Extracellular matrix g 93.8 7.5 0.00016 49.5 21.6 30 187-216 1492-1523(1758)
159 TIGR02918 accessory Sec system 93.7 0.12 2.7E-06 60.1 6.8 101 638-768 209-313 (500)
160 PF12718 Tropomyosin_1: Tropom 93.7 5.1 0.00011 39.8 16.9 76 326-401 49-128 (143)
161 PF05622 HOOK: HOOK protein; 93.7 0.018 4E-07 69.5 0.0 181 245-429 195-386 (713)
162 COG3883 Uncharacterized protei 93.6 3.1 6.7E-05 45.4 16.4 171 128-311 21-192 (265)
163 PLN03229 acetyl-coenzyme A car 93.6 1.7 3.8E-05 52.9 15.8 147 197-365 429-612 (762)
164 KOG0249 LAR-interacting protei 93.4 3.5 7.5E-05 50.1 17.6 151 252-421 134-284 (916)
165 KOG0250 DNA repair protein RAD 93.3 18 0.00039 46.1 24.2 70 139-219 208-277 (1074)
166 TIGR00634 recN DNA repair prot 93.3 11 0.00024 44.8 21.9 23 384-406 349-371 (563)
167 PRK09814 beta-1,6-galactofuran 93.1 0.49 1.1E-05 51.7 9.7 92 638-763 61-157 (333)
168 COG0419 SbcC ATPase involved i 92.8 34 0.00074 43.1 33.0 51 160-216 495-545 (908)
169 KOG0933 Structural maintenance 92.7 16 0.00034 46.3 22.1 84 243-329 294-377 (1174)
170 KOG0995 Centromere-associated 92.7 4.3 9.3E-05 48.2 16.9 154 244-421 229-393 (581)
171 TIGR01005 eps_transp_fam exopo 92.7 18 0.00039 44.4 23.1 38 510-553 544-583 (754)
172 KOG0018 Structural maintenance 92.7 32 0.00069 43.9 24.8 217 159-428 669-903 (1141)
173 PRK04863 mukB cell division pr 92.6 20 0.00043 47.7 24.5 151 153-321 280-430 (1486)
174 PF05701 WEMBL: Weak chloropla 92.6 27 0.00059 41.4 24.6 129 252-406 297-425 (522)
175 PLN03063 alpha,alpha-trehalose 92.5 0.17 3.6E-06 62.4 5.7 113 625-769 136-259 (797)
176 TIGR02680 conserved hypothetic 92.2 18 0.0004 47.6 23.5 17 638-654 1275-1291(1353)
177 PF04849 HAP1_N: HAP1 N-termin 92.1 20 0.00043 40.1 20.3 35 245-279 162-196 (306)
178 PF05667 DUF812: Protein of un 92.1 35 0.00076 41.4 25.4 110 247-370 423-532 (594)
179 PRK10929 putative mechanosensi 92.0 38 0.00083 43.9 25.3 59 277-336 169-232 (1109)
180 PF05667 DUF812: Protein of un 92.0 23 0.0005 42.9 22.3 37 393-431 473-509 (594)
181 TIGR03007 pepcterm_ChnLen poly 91.9 11 0.00024 43.5 19.2 27 280-306 210-236 (498)
182 PF15397 DUF4618: Domain of un 91.8 8 0.00017 42.2 16.5 161 263-452 62-237 (258)
183 PF14662 CCDC155: Coiled-coil 91.5 6.7 0.00014 41.0 14.9 145 247-397 26-188 (193)
184 PF09787 Golgin_A5: Golgin sub 91.4 9.7 0.00021 44.9 18.2 45 360-404 252-304 (511)
185 TIGR01843 type_I_hlyD type I s 91.1 12 0.00026 41.6 17.8 36 406-441 246-281 (423)
186 PF14915 CCDC144C: CCDC144C pr 91.0 30 0.00064 38.6 20.6 63 365-434 212-274 (305)
187 KOG0978 E3 ubiquitin ligase in 90.9 23 0.00049 43.5 20.7 166 246-430 457-625 (698)
188 KOG0978 E3 ubiquitin ligase in 90.8 49 0.0011 40.8 24.7 193 135-354 336-531 (698)
189 TIGR03007 pepcterm_ChnLen poly 90.8 2.9 6.3E-05 48.3 13.0 39 326-364 331-369 (498)
190 PRK01156 chromosome segregatio 90.7 54 0.0012 41.1 34.5 34 245-278 471-504 (895)
191 PF04912 Dynamitin: Dynamitin 90.7 11 0.00024 42.7 17.3 137 271-421 206-365 (388)
192 KOG0971 Microtubule-associated 90.7 5 0.00011 49.8 14.9 118 269-401 480-597 (1243)
193 KOG4809 Rab6 GTPase-interactin 90.7 12 0.00026 44.5 17.3 135 247-401 328-462 (654)
194 PLN02939 transferase, transfer 90.5 7.3 0.00016 49.3 16.7 151 250-403 156-346 (977)
195 cd03784 GT1_Gtf_like This fami 90.5 1.4 2.9E-05 48.7 9.6 38 512-555 1-38 (401)
196 PRK14501 putative bifunctional 90.3 0.46 1E-05 57.8 6.3 113 625-769 122-245 (726)
197 COG1579 Zn-ribbon protein, pos 90.3 17 0.00038 39.2 17.2 45 324-368 129-174 (239)
198 COG5185 HEC1 Protein involved 90.2 9.3 0.0002 44.7 15.8 100 240-342 261-360 (622)
199 PF09728 Taxilin: Myosin-like 90.1 35 0.00076 38.0 23.5 122 293-424 112-234 (309)
200 PF13514 AAA_27: AAA domain 89.8 74 0.0016 41.2 26.1 19 348-366 852-870 (1111)
201 KOG0250 DNA repair protein RAD 89.6 21 0.00046 45.5 19.4 35 249-283 733-767 (1074)
202 TIGR01843 type_I_hlyD type I s 89.6 9.9 0.00021 42.3 15.5 27 252-278 153-179 (423)
203 PF01496 V_ATPase_I: V-type AT 89.5 0.93 2E-05 55.5 8.0 105 325-430 152-278 (759)
204 KOG0963 Transcription factor/C 89.5 31 0.00067 41.7 19.8 114 171-312 233-347 (629)
205 KOG4360 Uncharacterized coiled 89.4 27 0.00059 41.4 18.9 158 246-406 162-347 (596)
206 PF13851 GAS: Growth-arrest sp 89.4 10 0.00022 39.6 14.4 27 383-409 145-171 (201)
207 PRK11281 hypothetical protein; 89.3 22 0.00048 46.0 19.9 20 406-425 363-382 (1113)
208 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.3 9 0.0002 37.2 13.1 127 251-393 4-131 (132)
209 PLN03229 acetyl-coenzyme A car 89.1 21 0.00046 44.0 18.5 41 171-216 434-474 (762)
210 COG4942 Membrane-bound metallo 89.1 43 0.00094 39.0 20.2 73 138-213 38-110 (420)
211 PRK10929 putative mechanosensi 88.8 88 0.0019 40.7 27.3 58 251-311 174-231 (1109)
212 PRK11281 hypothetical protein; 88.6 83 0.0018 41.0 24.2 39 372-410 395-433 (1113)
213 PF08317 Spc7: Spc7 kinetochor 88.5 10 0.00022 42.2 14.4 82 247-337 153-234 (325)
214 TIGR01005 eps_transp_fam exopo 88.5 28 0.0006 42.8 19.5 25 397-421 378-402 (754)
215 PF08317 Spc7: Spc7 kinetochor 88.5 7.3 0.00016 43.3 13.4 49 138-186 122-176 (325)
216 KOG0976 Rho/Rac1-interacting s 88.3 32 0.00069 42.8 18.9 50 249-298 315-368 (1265)
217 TIGR03017 EpsF chain length de 88.2 5.1 0.00011 45.5 12.3 39 326-364 318-356 (444)
218 KOG0979 Structural maintenance 88.0 29 0.00062 44.1 18.8 209 159-393 174-383 (1072)
219 PRK09039 hypothetical protein; 87.5 18 0.00039 40.7 15.8 67 353-426 112-178 (343)
220 KOG0612 Rho-associated, coiled 87.3 89 0.0019 40.7 22.6 33 246-278 619-651 (1317)
221 KOG0977 Nuclear envelope prote 87.2 44 0.00096 40.1 19.2 178 245-429 164-351 (546)
222 PF08288 PIGA: PIGA (GPI ancho 87.0 2.4 5.2E-05 39.3 7.0 38 638-679 48-85 (90)
223 PF09787 Golgin_A5: Golgin sub 86.9 73 0.0016 37.7 21.7 79 250-335 274-353 (511)
224 cd07627 BAR_Vps5p The Bin/Amph 86.9 43 0.00094 35.0 18.9 81 348-428 113-198 (216)
225 PF09789 DUF2353: Uncharacteri 86.8 26 0.00056 39.4 16.2 40 245-284 67-106 (319)
226 TIGR02680 conserved hypothetic 86.5 1.3E+02 0.0028 40.1 29.0 112 166-307 276-387 (1353)
227 KOG0999 Microtubule-associated 85.9 16 0.00036 43.5 14.5 41 316-356 198-245 (772)
228 KOG0995 Centromere-associated 85.6 92 0.002 37.6 27.5 27 249-275 331-357 (581)
229 COG1579 Zn-ribbon protein, pos 85.6 58 0.0013 35.3 19.3 30 282-311 53-82 (239)
230 cd07623 BAR_SNX1_2 The Bin/Amp 85.2 54 0.0012 34.6 18.8 94 337-431 110-207 (224)
231 PF05010 TACC: Transforming ac 85.2 49 0.0011 35.1 16.6 34 392-425 140-173 (207)
232 PF10186 Atg14: UV radiation r 85.2 8.5 0.00019 40.9 11.3 19 160-178 28-46 (302)
233 KOG0999 Microtubule-associated 85.1 97 0.0021 37.4 21.0 127 165-340 7-135 (772)
234 cd07647 F-BAR_PSTPIP The F-BAR 85.0 34 0.00073 36.3 15.6 141 247-403 57-207 (239)
235 smart00787 Spc7 Spc7 kinetocho 84.5 22 0.00048 39.7 14.4 78 249-336 203-281 (312)
236 COG4717 Uncharacterized conser 84.4 46 0.001 41.8 17.9 233 159-412 557-801 (984)
237 KOG4302 Microtubule-associated 84.3 1.1E+02 0.0025 37.6 22.6 71 377-457 308-384 (660)
238 PF05483 SCP-1: Synaptonemal c 84.3 1.2E+02 0.0025 37.6 22.8 76 240-315 447-526 (786)
239 TIGR01000 bacteriocin_acc bact 84.2 44 0.00095 38.7 17.3 29 247-275 94-122 (457)
240 KOG0994 Extracellular matrix g 84.1 1.4E+02 0.0029 39.1 21.7 18 527-544 1733-1750(1758)
241 PF15619 Lebercilin: Ciliary p 84.1 47 0.001 34.8 15.8 30 244-273 62-91 (194)
242 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.7 9.3 0.0002 37.1 9.9 56 249-304 58-114 (132)
243 COG4942 Membrane-bound metallo 83.3 21 0.00046 41.4 13.9 53 130-182 58-110 (420)
244 COG4913 Uncharacterized protei 83.2 15 0.00033 45.1 13.0 75 380-456 775-853 (1104)
245 cd00176 SPEC Spectrin repeats, 83.1 28 0.00061 33.9 13.2 38 249-286 32-69 (213)
246 PRK10246 exonuclease subunit S 83.1 1.6E+02 0.0034 38.2 27.3 35 247-281 294-328 (1047)
247 KOG3156 Uncharacterized membra 83.0 6.5 0.00014 41.7 8.9 141 125-345 56-200 (220)
248 PF06705 SF-assemblin: SF-asse 82.9 71 0.0015 34.1 17.6 155 262-431 39-193 (247)
249 PF01576 Myosin_tail_1: Myosin 82.4 0.41 8.9E-06 59.5 0.0 61 247-307 423-487 (859)
250 PF05911 DUF869: Plant protein 82.2 41 0.00088 42.0 16.6 106 245-366 94-199 (769)
251 KOG0977 Nuclear envelope prote 81.6 39 0.00086 40.5 15.6 83 251-345 57-139 (546)
252 PF05278 PEARLI-4: Arabidopsis 81.2 30 0.00066 38.0 13.5 135 130-306 125-260 (269)
253 PF04012 PspA_IM30: PspA/IM30 81.0 28 0.00061 36.2 12.9 100 291-403 26-134 (221)
254 TIGR02398 gluc_glyc_Psyn gluco 80.7 6.7 0.00015 46.2 9.1 46 625-679 121-166 (487)
255 TIGR03017 EpsF chain length de 80.7 77 0.0017 36.1 17.3 42 352-397 256-298 (444)
256 COG0497 RecN ATPase involved i 79.9 1.4E+02 0.0029 36.3 19.3 37 515-553 456-492 (557)
257 PF12252 SidE: Dot/Icm substra 79.6 45 0.00097 42.7 15.5 36 359-394 1287-1322(1439)
258 PF04007 DUF354: Protein of un 79.4 26 0.00057 39.4 12.8 40 512-558 1-40 (335)
259 KOG4673 Transcription factor T 79.2 1.7E+02 0.0038 36.2 24.4 215 244-478 417-663 (961)
260 PF11997 DUF3492: Domain of un 79.1 23 0.00051 38.4 12.0 42 512-554 1-42 (268)
261 PF09325 Vps5: Vps5 C terminal 79.0 83 0.0018 32.5 15.9 81 347-427 132-217 (236)
262 KOG0804 Cytoplasmic Zn-finger 78.9 35 0.00076 39.9 13.6 83 312-400 347-429 (493)
263 KOG0018 Structural maintenance 78.9 85 0.0018 40.4 17.7 143 243-393 683-840 (1141)
264 PF09730 BicD: Microtubule-ass 78.7 44 0.00096 41.4 15.2 108 169-301 37-148 (717)
265 KOG0243 Kinesin-like protein [ 78.1 56 0.0012 41.9 16.0 121 279-426 432-559 (1041)
266 PF09730 BicD: Microtubule-ass 78.0 1.9E+02 0.0042 36.1 22.9 53 163-216 125-182 (717)
267 KOG0244 Kinesin-like protein [ 77.9 1.6E+02 0.0034 37.5 19.5 267 170-475 300-661 (913)
268 KOG4677 Golgi integral membran 77.7 1E+02 0.0022 36.3 16.7 75 239-323 298-382 (554)
269 KOG0946 ER-Golgi vesicle-tethe 77.0 1.5E+02 0.0032 37.5 18.5 69 247-315 734-826 (970)
270 PF12761 End3: Actin cytoskele 76.7 7.9 0.00017 40.6 7.1 52 273-324 88-140 (195)
271 COG0707 MurG UDP-N-acetylgluco 76.7 47 0.001 37.7 13.9 111 527-680 10-125 (357)
272 PF07106 TBPIP: Tat binding pr 76.6 5.8 0.00012 39.8 6.1 61 242-302 71-137 (169)
273 KOG1850 Myosin-like coiled-coi 76.5 1.4E+02 0.0031 33.8 24.0 210 143-424 23-240 (391)
274 PRK10884 SH3 domain-containing 76.4 6 0.00013 41.7 6.3 20 169-188 96-115 (206)
275 COG1842 PspA Phage shock prote 76.3 61 0.0013 34.7 13.8 73 290-367 26-98 (225)
276 PF00038 Filament: Intermediat 75.1 1.3E+02 0.0028 32.7 25.7 173 249-431 88-273 (312)
277 PRK11199 tyrA bifunctional cho 74.9 41 0.00088 38.1 12.8 28 527-554 104-131 (374)
278 PF04156 IncA: IncA protein; 74.9 29 0.00063 35.1 10.7 39 275-313 82-120 (191)
279 cd07664 BAR_SNX2 The Bin/Amphi 74.6 1.3E+02 0.0028 32.4 19.2 97 347-450 130-230 (234)
280 TIGR00634 recN DNA repair prot 73.8 1.6E+02 0.0035 35.3 18.0 49 247-295 172-223 (563)
281 smart00787 Spc7 Spc7 kinetocho 73.2 43 0.00093 37.5 12.2 54 245-301 146-199 (312)
282 PF00261 Tropomyosin: Tropomyo 73.2 1.3E+02 0.0029 31.9 23.5 20 326-345 120-139 (237)
283 PF09726 Macoilin: Transmembra 73.1 87 0.0019 38.8 15.7 48 383-431 554-605 (697)
284 KOG0979 Structural maintenance 73.0 1.2E+02 0.0025 39.0 16.7 42 376-420 407-448 (1072)
285 PF14073 Cep57_CLD: Centrosome 72.8 1.3E+02 0.0027 31.5 16.1 147 136-337 2-173 (178)
286 cd07651 F-BAR_PombeCdc15_like 72.8 1.2E+02 0.0027 31.9 15.0 54 247-300 57-112 (236)
287 PF04156 IncA: IncA protein; 72.6 28 0.0006 35.3 9.8 18 250-267 95-112 (191)
288 PF07407 Seadorna_VP6: Seadorn 72.4 12 0.00025 42.1 7.4 105 249-412 31-136 (420)
289 PF10473 CENP-F_leu_zip: Leuci 72.1 77 0.0017 31.8 12.4 31 155-185 6-36 (140)
290 PF07989 Microtub_assoc: Micro 71.9 9.9 0.00021 34.1 5.6 30 247-276 4-33 (75)
291 PRK09841 cryptic autophosphory 71.8 28 0.00062 42.8 11.4 39 510-552 529-567 (726)
292 PF11559 ADIP: Afadin- and alp 71.2 50 0.0011 32.5 11.0 41 324-366 106-149 (151)
293 KOG0964 Structural maintenance 71.1 3.2E+02 0.0069 35.4 19.5 138 280-427 313-460 (1200)
294 TIGR01000 bacteriocin_acc bact 71.0 1.1E+02 0.0023 35.6 15.3 21 323-343 240-260 (457)
295 KOG4438 Centromere-associated 70.7 2.2E+02 0.0048 33.5 20.3 214 127-373 95-336 (446)
296 PF06008 Laminin_I: Laminin Do 70.3 1.6E+02 0.0035 31.7 19.8 67 287-353 152-219 (264)
297 KOG2129 Uncharacterized conser 70.3 96 0.0021 36.3 14.1 86 253-341 182-275 (552)
298 PF04849 HAP1_N: HAP1 N-termin 69.5 60 0.0013 36.4 12.2 69 201-273 171-243 (306)
299 KOG0804 Cytoplasmic Zn-finger 69.4 36 0.00077 39.9 10.6 37 245-281 391-427 (493)
300 PF11932 DUF3450: Protein of u 69.2 46 0.00099 35.6 11.0 30 356-387 130-159 (251)
301 PF04100 Vps53_N: Vps53-like, 69.1 97 0.0021 35.6 14.2 124 248-386 23-147 (383)
302 TIGR01010 BexC_CtrB_KpsE polys 69.0 72 0.0016 35.6 13.0 64 280-345 241-304 (362)
303 KOG0243 Kinesin-like protein [ 68.9 3.6E+02 0.0077 35.1 21.5 19 249-267 496-514 (1041)
304 PF13514 AAA_27: AAA domain 68.9 3.6E+02 0.0078 35.1 26.9 45 261-305 283-327 (1111)
305 KOG1003 Actin filament-coating 68.4 37 0.00081 35.8 9.7 56 315-370 14-73 (205)
306 PF10473 CENP-F_leu_zip: Leuci 68.0 83 0.0018 31.6 11.7 89 247-338 7-106 (140)
307 PF10186 Atg14: UV radiation r 67.9 59 0.0013 34.6 11.6 50 252-301 22-76 (302)
308 TIGR03794 NHPM_micro_HlyD NHPM 67.8 94 0.002 35.5 13.8 25 327-351 228-252 (421)
309 PF02951 GSH-S_N: Prokaryotic 67.5 7.7 0.00017 37.5 4.4 41 512-555 1-41 (119)
310 KOG0992 Uncharacterized conser 66.4 2.9E+02 0.0064 33.2 20.1 82 251-335 232-314 (613)
311 KOG4809 Rab6 GTPase-interactin 66.2 3.1E+02 0.0067 33.4 18.7 237 144-431 312-560 (654)
312 KOG2129 Uncharacterized conser 65.5 2.8E+02 0.0061 32.7 21.3 120 247-383 133-284 (552)
313 PF10267 Tmemb_cc2: Predicted 65.2 28 0.00061 40.2 8.9 31 243-273 212-242 (395)
314 PF13166 AAA_13: AAA domain 65.1 3.2E+02 0.007 33.2 18.6 21 355-375 389-409 (712)
315 TIGR00998 8a0101 efflux pump m 65.0 1.1E+02 0.0025 33.2 13.3 14 543-556 256-269 (334)
316 TIGR02977 phageshock_pspA phag 64.5 89 0.0019 32.9 11.9 105 291-400 27-132 (219)
317 PF12325 TMF_TATA_bd: TATA ele 64.0 49 0.0011 32.3 9.0 51 287-337 43-93 (120)
318 PRK11519 tyrosine kinase; Prov 64.0 54 0.0012 40.3 11.6 39 510-552 524-562 (719)
319 KOG0239 Kinesin (KAR3 subfamil 63.8 3.4E+02 0.0073 33.7 18.1 94 167-283 108-201 (670)
320 TIGR00661 MJ1255 conserved hyp 63.7 99 0.0021 33.6 12.5 27 527-554 9-36 (321)
321 PF00804 Syntaxin: Syntaxin; 63.0 1.1E+02 0.0024 27.1 11.3 83 327-422 15-103 (103)
322 PF06160 EzrA: Septation ring 63.0 3.4E+02 0.0074 32.7 23.7 176 247-426 310-492 (560)
323 PF07798 DUF1640: Protein of u 62.7 1.8E+02 0.004 29.6 15.9 27 249-275 72-98 (177)
324 PF12325 TMF_TATA_bd: TATA ele 62.6 38 0.00083 33.0 8.0 63 245-307 25-87 (120)
325 PF15188 CCDC-167: Coiled-coil 61.7 15 0.00031 34.0 4.7 60 247-306 2-61 (85)
326 PF13851 GAS: Growth-arrest sp 61.2 2.2E+02 0.0047 29.9 16.5 19 325-343 149-167 (201)
327 PF05384 DegS: Sensor protein 61.1 1.2E+02 0.0025 31.1 11.5 105 250-369 20-124 (159)
328 PF04111 APG6: Autophagy prote 61.1 32 0.0007 38.3 8.3 20 528-547 173-192 (314)
329 PF14362 DUF4407: Domain of un 61.0 1.2E+02 0.0026 33.2 12.5 73 278-350 132-213 (301)
330 COG4913 Uncharacterized protei 60.8 4.4E+02 0.0095 33.3 18.7 77 475-555 975-1060(1104)
331 PRK10698 phage shock protein P 60.7 2E+02 0.0042 30.7 13.6 108 291-403 27-135 (222)
332 PF08614 ATG16: Autophagy prot 60.2 26 0.00057 36.1 6.9 39 152-190 74-112 (194)
333 PF01576 Myosin_tail_1: Myosin 60.1 2.9 6.3E-05 52.2 0.0 119 282-412 708-830 (859)
334 PF09789 DUF2353: Uncharacteri 59.9 59 0.0013 36.6 10.0 129 244-399 80-214 (319)
335 KOG4687 Uncharacterized coiled 59.7 2.9E+02 0.0063 30.9 15.6 35 247-281 87-121 (389)
336 KOG2273 Membrane coat complex 59.2 3.6E+02 0.0077 31.7 18.5 42 325-366 362-403 (503)
337 PRK10884 SH3 domain-containing 59.1 1.1E+02 0.0025 32.3 11.5 33 270-302 82-114 (206)
338 KOG0963 Transcription factor/C 59.0 4.2E+02 0.0092 32.6 25.1 189 155-395 127-335 (629)
339 COG3206 GumC Uncharacterized p 59.0 1.5E+02 0.0033 34.3 13.5 41 153-193 188-229 (458)
340 PF07083 DUF1351: Protein of u 58.9 2.5E+02 0.0053 29.8 16.2 183 262-464 20-204 (215)
341 PF09325 Vps5: Vps5 C terminal 57.9 2.3E+02 0.005 29.2 17.2 43 325-370 134-176 (236)
342 PF06548 Kinesin-related: Kine 57.6 2.8E+02 0.0061 32.9 14.9 88 298-397 380-471 (488)
343 PF07464 ApoLp-III: Apolipopho 57.3 64 0.0014 32.8 8.9 71 348-427 79-150 (155)
344 PRK09343 prefoldin subunit bet 57.3 69 0.0015 30.9 8.8 50 259-308 62-112 (121)
345 PRK10869 recombination and rep 57.2 4.2E+02 0.0091 32.0 22.5 21 385-405 345-365 (553)
346 COG2433 Uncharacterized conser 56.6 18 0.00039 43.6 5.6 64 242-305 428-491 (652)
347 KOG4593 Mitotic checkpoint pro 56.2 4.9E+02 0.011 32.5 21.7 29 314-342 167-195 (716)
348 KOG0962 DNA repair protein RAD 56.1 6.4E+02 0.014 33.8 20.8 148 261-416 799-955 (1294)
349 PF08172 CASP_C: CASP C termin 56.0 31 0.00068 37.4 6.9 108 347-464 83-219 (248)
350 KOG1962 B-cell receptor-associ 55.5 52 0.0011 35.2 8.2 14 244-257 115-128 (216)
351 KOG1937 Uncharacterized conser 55.3 4.3E+02 0.0093 31.5 17.1 142 247-417 228-374 (521)
352 KOG2072 Translation initiation 55.3 5.6E+02 0.012 32.8 23.1 91 129-219 541-652 (988)
353 PRK10246 exonuclease subunit S 54.0 6.2E+02 0.013 32.9 28.2 16 638-653 973-988 (1047)
354 PRK10476 multidrug resistance 53.9 2.3E+02 0.005 31.4 13.5 12 543-554 260-271 (346)
355 PRK00286 xseA exodeoxyribonucl 53.7 1.9E+02 0.0042 33.3 13.2 84 326-422 305-388 (438)
356 PRK09841 cryptic autophosphory 53.4 5.3E+02 0.012 32.0 23.3 55 286-341 272-326 (726)
357 PRK10361 DNA recombination pro 53.0 4.7E+02 0.01 31.3 18.5 22 283-304 69-90 (475)
358 KOG4572 Predicted DNA-binding 52.7 6.1E+02 0.013 32.5 19.8 94 196-303 1084-1190(1424)
359 PF05911 DUF869: Plant protein 52.6 4.6E+02 0.01 33.2 16.8 109 259-370 532-644 (769)
360 PLN02842 nucleotide kinase 52.4 77 0.0017 37.9 9.8 145 396-554 150-307 (505)
361 PF07106 TBPIP: Tat binding pr 52.3 48 0.001 33.3 7.2 54 279-333 84-137 (169)
362 KOG0239 Kinesin (KAR3 subfamil 52.2 5E+02 0.011 32.3 16.8 29 521-552 368-398 (670)
363 cd07596 BAR_SNX The Bin/Amphip 52.1 2.6E+02 0.0056 28.0 17.9 82 348-429 115-201 (218)
364 cd07665 BAR_SNX1 The Bin/Amphi 51.4 3.5E+02 0.0076 29.3 18.7 79 348-427 131-213 (234)
365 PF03915 AIP3: Actin interacti 51.3 4E+02 0.0086 31.4 15.1 82 244-343 152-237 (424)
366 COG4550 Predicted membrane pro 50.6 2.6E+02 0.0056 27.5 11.2 96 324-431 7-109 (120)
367 PF11802 CENP-K: Centromere-as 50.2 3.7E+02 0.0081 29.9 13.8 149 271-422 6-173 (268)
368 cd07652 F-BAR_Rgd1 The F-BAR ( 50.1 3.5E+02 0.0076 28.9 13.6 162 247-412 62-226 (234)
369 PF09304 Cortex-I_coil: Cortex 49.6 2E+02 0.0043 27.9 10.2 21 348-368 56-76 (107)
370 PF14915 CCDC144C: CCDC144C pr 49.3 4.4E+02 0.0095 29.8 18.1 179 171-364 61-267 (305)
371 COG3853 TelA Uncharacterized p 49.3 4.9E+02 0.011 30.4 15.7 101 259-362 157-266 (386)
372 cd07667 BAR_SNX30 The Bin/Amph 49.0 3.9E+02 0.0085 29.2 17.5 45 384-428 177-222 (240)
373 KOG0962 DNA repair protein RAD 48.6 8.2E+02 0.018 32.8 23.6 49 295-343 802-850 (1294)
374 PF09744 Jnk-SapK_ap_N: JNK_SA 48.6 2.9E+02 0.0063 28.2 12.0 75 247-337 33-107 (158)
375 PF02606 LpxK: Tetraacyldisacc 48.5 26 0.00056 39.2 5.0 46 508-558 31-78 (326)
376 KOG0981 DNA topoisomerase I [R 48.3 22 0.00047 42.7 4.5 37 130-166 245-282 (759)
377 PRK11519 tyrosine kinase; Prov 48.3 6.3E+02 0.014 31.4 22.0 52 285-337 271-322 (719)
378 KOG2391 Vacuolar sorting prote 48.1 2.6E+02 0.0057 32.1 12.4 93 385-487 246-338 (365)
379 KOG2398 Predicted proline-seri 48.1 6.2E+02 0.013 31.2 17.2 107 321-432 108-219 (611)
380 PF03033 Glyco_transf_28: Glyc 47.6 28 0.0006 32.5 4.4 27 528-554 7-35 (139)
381 KOG0249 LAR-interacting protei 47.4 1.6E+02 0.0034 36.7 11.3 124 141-280 109-232 (916)
382 PLN00016 RNA-binding protein; 47.4 21 0.00046 39.7 4.1 42 508-555 49-90 (378)
383 PF05278 PEARLI-4: Arabidopsis 47.1 2.2E+02 0.0049 31.5 11.6 148 143-332 112-262 (269)
384 TIGR01915 npdG NADPH-dependent 47.1 27 0.00058 36.2 4.6 28 527-554 6-33 (219)
385 PRK05771 V-type ATP synthase s 47.0 1.8E+02 0.0039 35.4 12.1 31 159-189 93-123 (646)
386 PF01920 Prefoldin_2: Prefoldi 46.9 73 0.0016 28.9 6.9 46 261-306 55-101 (106)
387 PF06005 DUF904: Protein of un 46.8 1.4E+02 0.0031 26.7 8.3 57 337-399 8-64 (72)
388 PF03962 Mnd1: Mnd1 family; I 46.6 2.5E+02 0.0054 29.2 11.4 30 348-379 108-137 (188)
389 KOG3850 Predicted membrane pro 46.6 3.5E+02 0.0077 31.6 13.2 134 158-349 266-403 (455)
390 cd00176 SPEC Spectrin repeats, 46.4 2.9E+02 0.0062 26.9 15.5 16 265-280 31-46 (213)
391 KOG1853 LIS1-interacting prote 46.0 4.6E+02 0.01 29.1 18.2 173 250-444 13-197 (333)
392 PF01442 Apolipoprotein: Apoli 45.5 3E+02 0.0064 26.8 18.6 15 383-397 161-175 (202)
393 COG0276 HemH Protoheme ferro-l 45.1 5.1E+02 0.011 29.4 15.0 95 435-557 32-127 (320)
394 COG0380 OtsA Trehalose-6-phosp 44.7 77 0.0017 37.7 8.2 111 625-767 136-259 (486)
395 TIGR03794 NHPM_micro_HlyD NHPM 44.7 5.3E+02 0.012 29.5 16.9 14 543-556 309-322 (421)
396 TIGR02338 gimC_beta prefoldin, 44.6 1.3E+02 0.0028 28.4 8.3 46 260-305 59-105 (110)
397 PF13870 DUF4201: Domain of un 44.2 3.6E+02 0.0077 27.3 13.1 37 249-285 5-41 (177)
398 PF04912 Dynamitin: Dynamitin 44.1 3.6E+02 0.0078 30.8 13.3 18 381-398 368-385 (388)
399 PRK03598 putative efflux pump 43.6 3.7E+02 0.0081 29.5 13.0 43 356-398 127-169 (331)
400 PF04124 Dor1: Dor1-like famil 43.4 5.2E+02 0.011 29.0 19.1 181 249-455 6-188 (338)
401 PHA03392 egt ecdysteroid UDP-g 43.4 33 0.00072 40.5 5.1 39 512-555 21-59 (507)
402 PF14073 Cep57_CLD: Centrosome 43.3 4.1E+02 0.009 27.9 13.0 100 312-422 64-171 (178)
403 PF08172 CASP_C: CASP C termin 42.9 93 0.002 33.8 8.0 31 315-345 117-147 (248)
404 PF07111 HCR: Alpha helical co 42.7 7.9E+02 0.017 30.9 22.9 52 380-431 386-437 (739)
405 PRK06719 precorrin-2 dehydroge 42.7 30 0.00065 34.5 4.0 28 527-555 19-46 (157)
406 KOG4603 TBP-1 interacting prot 42.6 1.4E+02 0.0031 31.2 8.6 95 249-363 78-172 (201)
407 KOG0946 ER-Golgi vesicle-tethe 42.6 8E+02 0.017 31.5 16.1 24 382-405 849-872 (970)
408 PF02403 Seryl_tRNA_N: Seryl-t 42.4 43 0.00092 31.1 4.7 19 199-217 4-22 (108)
409 PF07334 IFP_35_N: Interferon- 42.2 19 0.00041 32.6 2.2 27 252-278 2-28 (76)
410 COG0569 TrkA K+ transport syst 41.8 31 0.00067 36.4 4.1 27 528-554 6-32 (225)
411 PF14193 DUF4315: Domain of un 41.8 1E+02 0.0022 28.5 6.8 60 358-427 2-62 (83)
412 cd07666 BAR_SNX7 The Bin/Amphi 41.7 5E+02 0.011 28.3 14.4 67 348-424 154-221 (243)
413 PF09602 PhaP_Bmeg: Polyhydrox 41.4 4.3E+02 0.0093 27.5 13.4 91 323-425 12-104 (165)
414 PF06564 YhjQ: YhjQ protein; 41.4 35 0.00075 37.0 4.4 34 512-551 1-36 (243)
415 PF06548 Kinesin-related: Kine 41.2 7E+02 0.015 29.8 15.2 23 343-365 448-470 (488)
416 PF02994 Transposase_22: L1 tr 41.0 46 0.001 37.9 5.6 19 356-374 178-196 (370)
417 PF03999 MAP65_ASE1: Microtubu 41.0 9 0.0002 46.2 0.0 154 242-406 141-311 (619)
418 PF04899 MbeD_MobD: MbeD/MobD 40.8 98 0.0021 27.7 6.4 43 323-368 25-67 (70)
419 PRK01906 tetraacyldisaccharide 40.7 41 0.00089 38.0 5.1 45 509-558 53-99 (338)
420 PF13949 ALIX_LYPXL_bnd: ALIX 40.6 4.9E+02 0.011 27.9 22.9 50 259-308 79-132 (296)
421 PF03446 NAD_binding_2: NAD bi 40.6 37 0.0008 33.6 4.2 26 529-554 8-33 (163)
422 PF04012 PspA_IM30: PspA/IM30 40.6 4.4E+02 0.0096 27.4 17.9 86 260-347 26-119 (221)
423 PLN02205 alpha,alpha-trehalose 40.6 77 0.0017 40.1 7.9 111 625-766 189-314 (854)
424 PF12240 Angiomotin_C: Angiomo 40.2 5E+02 0.011 27.9 13.7 82 158-296 5-86 (205)
425 PLN02778 3,5-epimerase/4-reduc 40.1 46 0.00099 36.0 5.2 39 504-552 2-40 (298)
426 KOG3565 Cdc42-interacting prot 39.9 8.3E+02 0.018 30.4 19.6 114 134-280 6-120 (640)
427 PF13747 DUF4164: Domain of un 39.7 3.1E+02 0.0067 25.4 10.1 52 353-404 11-62 (89)
428 PF04977 DivIC: Septum formati 39.6 39 0.00086 29.1 3.8 47 247-293 21-67 (80)
429 KOG4593 Mitotic checkpoint pro 39.0 8.9E+02 0.019 30.4 25.2 60 129-192 177-236 (716)
430 TIGR00682 lpxK tetraacyldisacc 38.9 52 0.0011 36.7 5.5 45 509-558 25-71 (311)
431 PRK06718 precorrin-2 dehydroge 38.7 37 0.00081 35.2 4.1 28 527-555 16-43 (202)
432 PRK10117 trehalose-6-phosphate 38.5 71 0.0015 37.8 6.7 111 625-767 112-234 (474)
433 PF10146 zf-C4H2: Zinc finger- 38.4 2.1E+02 0.0046 30.9 9.7 84 268-365 19-103 (230)
434 PRK05771 V-type ATP synthase s 38.4 1.4E+02 0.0031 36.2 9.5 69 361-429 192-263 (646)
435 PF03980 Nnf1: Nnf1 ; InterPr 38.2 1.6E+02 0.0035 27.5 7.9 92 149-272 11-109 (109)
436 PF07246 Phlebovirus_NSM: Phle 38.2 52 0.0011 36.2 5.1 28 249-276 215-242 (264)
437 PF08537 NBP1: Fungal Nap bind 38.1 2.9E+02 0.0062 31.4 10.9 51 133-187 85-137 (323)
438 TIGR01007 eps_fam capsular exo 37.9 55 0.0012 33.1 5.1 36 511-552 16-53 (204)
439 PRK10869 recombination and rep 37.5 8.1E+02 0.018 29.6 18.0 47 373-420 292-338 (553)
440 PF11932 DUF3450: Protein of u 37.5 4.9E+02 0.011 27.9 12.3 51 377-427 66-116 (251)
441 PLN03064 alpha,alpha-trehalose 37.2 1.2E+02 0.0026 39.0 8.7 112 625-768 220-342 (934)
442 PF01975 SurE: Survival protei 37.1 43 0.00093 34.9 4.2 39 512-557 1-39 (196)
443 PF10168 Nup88: Nuclear pore c 37.1 5.2E+02 0.011 32.4 13.9 25 343-367 600-624 (717)
444 COG3879 Uncharacterized protei 37.1 88 0.0019 34.2 6.6 55 169-230 67-121 (247)
445 PF04111 APG6: Autophagy prote 36.9 1.9E+02 0.0042 32.3 9.5 34 247-280 103-136 (314)
446 PRK10037 cell division protein 36.9 47 0.001 35.0 4.6 34 512-551 1-36 (250)
447 PLN03188 kinesin-12 family pro 36.5 5.2E+02 0.011 34.5 14.0 155 145-363 1062-1238(1320)
448 PF05659 RPW8: Arabidopsis bro 36.5 1.3E+02 0.0029 30.1 7.4 52 293-344 32-84 (147)
449 PF06920 Ded_cyto: Dedicator o 36.3 1.4E+02 0.003 30.4 7.7 110 308-417 55-167 (178)
450 TIGR02132 phaR_Bmeg polyhydrox 36.1 5.5E+02 0.012 27.1 12.8 91 272-368 27-125 (189)
451 PF04420 CHD5: CHD5-like prote 36.0 59 0.0013 32.8 4.9 57 253-309 36-94 (161)
452 PF15188 CCDC-167: Coiled-coil 36.0 41 0.00089 31.1 3.4 64 172-260 4-67 (85)
453 COG1269 NtpI Archaeal/vacuolar 35.8 1.5E+02 0.0033 36.4 9.2 145 279-424 111-272 (660)
454 PLN02166 dTDP-glucose 4,6-dehy 35.6 54 0.0012 37.9 5.2 39 506-554 115-153 (436)
455 PF05325 DUF730: Protein of un 35.6 60 0.0013 30.8 4.4 48 247-297 68-115 (122)
456 PF06248 Zw10: Centromere/kine 35.4 7.7E+02 0.017 29.7 14.8 166 167-397 8-177 (593)
457 PRK13411 molecular chaperone D 35.3 1.7E+02 0.0038 35.7 9.5 42 263-304 504-545 (653)
458 PF08429 PLU-1: PLU-1-like pro 35.3 6.5E+02 0.014 27.8 14.7 54 326-379 250-303 (335)
459 PF09738 DUF2051: Double stran 35.1 3.3E+02 0.0071 30.7 10.8 166 139-314 97-302 (302)
460 COG3883 Uncharacterized protei 34.6 6.1E+02 0.013 28.2 12.5 50 160-209 60-110 (265)
461 PF15397 DUF4618: Domain of un 34.6 6.7E+02 0.014 27.8 12.8 46 353-407 123-168 (258)
462 COG4026 Uncharacterized protei 34.5 1.9E+02 0.0042 31.4 8.4 92 258-379 129-223 (290)
463 KOG4360 Uncharacterized coiled 34.4 1.7E+02 0.0036 35.2 8.6 30 287-316 274-303 (596)
464 KOG0853 Glycosyltransferase [C 34.3 1.8E+02 0.0039 34.8 9.1 155 505-680 28-200 (495)
465 COG1340 Uncharacterized archae 34.1 7.3E+02 0.016 28.0 21.4 35 141-175 16-50 (294)
466 PF02183 HALZ: Homeobox associ 34.1 34 0.00075 27.9 2.3 27 247-273 16-42 (45)
467 PF06818 Fez1: Fez1; InterPro 34.0 6.2E+02 0.013 27.1 14.3 8 406-413 185-192 (202)
468 KOG4603 TBP-1 interacting prot 33.9 4.6E+02 0.0099 27.6 10.6 41 245-285 118-158 (201)
469 PF04880 NUDE_C: NUDE protein, 33.8 51 0.0011 33.9 4.0 51 133-197 2-53 (166)
470 KOG1103 Predicted coiled-coil 33.8 8.1E+02 0.018 28.4 16.2 125 272-407 130-278 (561)
471 COG1382 GimC Prefoldin, chaper 33.7 3E+02 0.0064 27.1 8.9 112 160-316 7-119 (119)
472 KOG4403 Cell surface glycoprot 33.6 2.5E+02 0.0054 33.2 9.7 55 278-332 365-427 (575)
473 PRK10361 DNA recombination pro 33.5 9.2E+02 0.02 29.0 15.3 26 404-429 138-163 (475)
474 PF00185 OTCace: Aspartate/orn 33.2 59 0.0013 32.5 4.4 36 511-555 2-37 (158)
475 PF05483 SCP-1: Synaptonemal c 33.2 1.1E+03 0.024 29.8 23.3 39 390-428 427-465 (786)
476 CHL00194 ycf39 Ycf39; Provisio 33.0 59 0.0013 35.1 4.7 29 527-555 6-34 (317)
477 cd00632 Prefoldin_beta Prefold 32.9 4.1E+02 0.0089 24.7 10.2 94 326-428 6-99 (105)
478 PF04011 LemA: LemA family; I 32.9 5.5E+02 0.012 26.2 13.1 39 383-421 120-158 (186)
479 KOG1937 Uncharacterized conser 32.9 9.3E+02 0.02 28.9 22.8 80 131-215 293-377 (521)
480 PRK00207 sulfur transfer compl 32.7 91 0.002 30.3 5.4 38 512-552 1-39 (128)
481 cd07672 F-BAR_PSTPIP2 The F-BA 32.2 6.7E+02 0.015 27.0 16.1 28 247-274 58-85 (240)
482 PF05384 DegS: Sensor protein 32.2 5.7E+02 0.012 26.2 11.4 59 147-215 8-66 (159)
483 TIGR01380 glut_syn glutathione 32.1 48 0.001 36.5 3.9 41 512-555 1-41 (312)
484 TIGR00020 prfB peptide chain r 31.8 1.7E+02 0.0037 33.7 8.1 21 196-216 22-42 (364)
485 PF10481 CENP-F_N: Cenp-F N-te 31.8 6.1E+02 0.013 28.5 11.8 111 274-404 18-132 (307)
486 PF06785 UPF0242: Uncharacteri 31.8 6.5E+02 0.014 29.0 12.2 146 151-333 63-262 (401)
487 PF14197 Cep57_CLD_2: Centroso 31.7 2.4E+02 0.0051 25.1 7.3 64 254-337 2-65 (69)
488 PRK13849 putative crown gall t 31.6 69 0.0015 33.9 4.8 34 512-551 1-36 (231)
489 PF02403 Seryl_tRNA_N: Seryl-t 31.5 2.2E+02 0.0048 26.3 7.6 69 147-215 31-99 (108)
490 COG2910 Putative NADH-flavin r 31.3 56 0.0012 34.7 3.9 38 512-559 1-38 (211)
491 PF13166 AAA_13: AAA domain 31.1 1E+03 0.023 28.9 16.2 8 643-650 565-572 (712)
492 PRK14619 NAD(P)H-dependent gly 31.0 71 0.0015 34.9 4.9 34 511-555 4-37 (308)
493 PF03087 DUF241: Arabidopsis p 31.0 5E+02 0.011 27.8 11.1 78 348-431 25-108 (231)
494 PRK06249 2-dehydropantoate 2-r 30.9 69 0.0015 35.0 4.8 35 509-554 3-37 (313)
495 PRK07720 fliJ flagellar biosyn 30.8 5.1E+02 0.011 25.2 13.0 100 330-430 6-119 (146)
496 PF13815 Dzip-like_N: Iguana/D 30.6 1.7E+02 0.0037 28.0 6.8 45 382-430 74-118 (118)
497 KOG3958 Putative dynamitin [Cy 30.5 8.6E+02 0.019 27.7 20.2 80 129-215 56-143 (371)
498 TIGR01470 cysG_Nterm siroheme 30.2 65 0.0014 33.6 4.2 29 527-556 15-43 (205)
499 PF09140 MipZ: ATPase MipZ; I 30.1 62 0.0013 35.6 4.1 34 513-552 1-36 (261)
500 PF10458 Val_tRNA-synt_C: Valy 30.1 1.4E+02 0.003 25.7 5.6 56 160-215 5-64 (66)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.3e-199 Score=1731.42 Aligned_cols=773 Identities=68% Similarity=1.050 Sum_probs=720.2
Q ss_pred CCcccccccccCcceeecccCCCCcCcccccccccccccccccccccccCCCchhHHhhhcccCCCCCCCCCCCCCccCC
Q 003536 1 MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTS 80 (812)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~k~~~~k~~~~~~~~~~~~~~~~~~ 80 (812)
||.+.++||++|||+++.| +.+||+|+||++|+||+||||+|||||||||+|+++|+| ||+|++||+|+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 69 (977)
T PLN02939 1 AAAAESAALLSHGCGPIRS----------RAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQ-RSSNSKLQSNT 69 (977)
T ss_pred CchhhhhhHhhcccccccc----------CCCCCCchhccccccccccCCCchhhhhhhhccCCCCcc-cccccccccCc
Confidence 5778899999999998844 679999999999999999999999999999999999998 99999999999
Q ss_pred CCCCcccccccCC--CCC-Ccccccccccc-cccccccccccc----cccCCCccccccchhHHHHHHHhhhhhHHHHHH
Q 003536 81 DGDSESESSLIDR--EPI-DVEHTEEQNLG-SVFVPELKESLV----LNCDGGEELSTSQLDNLISMIRNAEKNILLLNE 152 (812)
Q Consensus 81 d~~~~~e~~~~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (812)
|||+|+|++++++ +.| +.|+.+.+.+. +.+.++.+.+.. -+..+|+|+|++|||||+|||||||||||||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (977)
T PLN02939 70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ 149 (977)
T ss_pred cccccccccccccccccccCCCCccccccchhhcchhhhccccHhhhhccccccccccccHHHHHHHHHHHHhhhHhHHH
Confidence 9999999999996 444 55555544443 345555444433 367789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCC
Q 003536 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (812)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (812)
||++||+||+|||+|||+|||+||||||||||||+|+|+++|+++||||+|+|||||||||+++++++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------- 219 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 003536 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (812)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (812)
.+|+|++||++||+|||+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+
T Consensus 220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 220 -----------CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred -----------ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 003536 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (812)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (812)
||+||++|| |||||||||+||++||||+|+|++||+||||||+|||+||+||+|||+||+||+++ ++||||||+
T Consensus 289 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 362 (977)
T PLN02939 289 KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKL 362 (977)
T ss_pred hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999999999999999977 999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhhHHhhcCcHHHHHHHH
Q 003536 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLRE 472 (812)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~l~~~~~~~e~~~l~~ 472 (812)
+|+|||+||+||+||+++|+++|++||++|++|++|++++++++|+++|||+|||+||||||+|+|+++|+.+||+.||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~ 442 (977)
T PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLRE 442 (977)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchhHhhhhhhhhhhhhHHhhhhccCCCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEe
Q 003536 473 MVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 473 ~v~~~~~~~~d~y~~~~~~~~~e~~~~~~~~~~~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VIt 552 (812)
+||+|+.++.++|+++++..++|++++|++++.+++.++|||+|||+|++|++|+||||+||++||+||+++||+|.||+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIl 522 (977)
T PLN02939 443 MVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVL 522 (977)
T ss_pred HHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHH
Q 003536 553 PKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE 632 (812)
Q Consensus 553 PkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLe 632 (812)
|+|+++....+..+......+.++++|..+.++||.+.++||++|||++++|+.||+|+.+||+.||+.||+|||+|+++
T Consensus 523 P~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe 602 (977)
T PLN02939 523 PKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALE 602 (977)
T ss_pred CCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999875433333333334455677777789999999999999999986665699999999999999999999999999
Q ss_pred HHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCC
Q 003536 633 LLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH 712 (812)
Q Consensus 633 lLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~ 712 (812)
++.+.+++||||||||||||+++|++++.|...++.++|+||||||+.|||.|+...+..||+|+++|.++++++++ ++
T Consensus 603 ~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~ 681 (977)
T PLN02939 603 LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AH 681 (977)
T ss_pred HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cC
Confidence 99998999999999999999998888877766667789999999999999999988888899999988778888754 57
Q ss_pred CchhHHHHHHHHcCcEEecCcchhhh----hccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHH
Q 003536 713 DRINPLKGAIVFSNIVTTVSPSYAQE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 788 (812)
Q Consensus 713 ~~vNllK~AI~~AD~VITVSptyAeE----~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~ 788 (812)
+++|++|+|+.+||+||||||+|++| +|+||+++++.+..|++||+||||++.|+|.+|++|+.+|++++|+||..
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~ 761 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAA 761 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhh
Confidence 88999999999999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 789 NKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 789 nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
||.+|++++||+..+++.|+||||
T Consensus 762 nK~aLRkelGL~~~d~d~pLIg~V 785 (977)
T PLN02939 762 NKAALRKQLGLSSADASQPLVGCI 785 (977)
T ss_pred hhHHHHHHhCCCcccccceEEEEe
Confidence 999999999999534678999997
No 2
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2.7e-50 Score=454.08 Aligned_cols=293 Identities=30% Similarity=0.536 Sum_probs=232.1
Q ss_pred CCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc--cccccceeEEEeeecCCceeeeEE
Q 003536 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRALDVVVESYFDGRLFKNKV 586 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~--i~~L~gv~V~V~s~fdG~~~~~~V 586 (812)
+++|||+|||+|++|++|+||||||+++|+++|+++||+|.||+|+|+++.... ...... ...+...+.+......+
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLR-LSDIEVPLKEKTDLLHV 81 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceE-EEEEEEeecCeeEEEEE
Confidence 466999999999999999999999999999999999999999999999885321 111100 00111112222111222
Q ss_pred EEEee--CCeeEEEeCCCCCCCCCcCCCCCCC-------CchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHH
Q 003536 587 WVSTI--EGLPVYFIEPHHPDKFFWRGQFYGE-------HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPL 657 (812)
Q Consensus 587 w~~~v--~GV~VYfLd~~~ps~~F~R~~lYG~-------~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl 657 (812)
+.... .||++|||+++ .||+|+.+|++ .||++||++||+++++++++.+++||||||||||||++|.+
T Consensus 82 ~~~~~~~~~v~~~~~~~~---~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~ 158 (489)
T PRK14098 82 KVTALPSSKIQTYFLYNE---KYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLL 158 (489)
T ss_pred EEecccCCCceEEEEeCH---HHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Confidence 22223 37999999864 48999999975 49999999999999999998889999999999999999544
Q ss_pred HHHHhccC-CCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchh
Q 003536 658 YWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYA 736 (812)
Q Consensus 658 ~lk~y~~~-gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyA 736 (812)
++..|... .+.++|+|+|+||+.+||.++...+..+ +|...+. ++.. +++.+|++++|+.+||+||||||+|+
T Consensus 159 l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~---~~~~--~~~~~n~lk~~i~~ad~VitVS~~~a 232 (489)
T PRK14098 159 LKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCS---GLHR--EGDEVNMLYTGVEHADLLTTTSPRYA 232 (489)
T ss_pred HHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhh---hhhh--cCCcccHHHHHHHhcCcceeeCHHHH
Confidence 43444222 2468999999999999999887655433 4443321 1211 34678999999999999999999999
Q ss_pred hh------hccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEE
Q 003536 737 QE------GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVK 810 (812)
Q Consensus 737 eE------~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVG 810 (812)
++ +|+|++++|..+..|+++|+||||++.|+|.+|+.++.+|+++++++|..||.++++++||+. +++.|+||
T Consensus 233 ~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~-~~~~~~i~ 311 (489)
T PRK14098 233 EEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPF-DEETPLVG 311 (489)
T ss_pred HHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCC-ccCCCEEE
Confidence 98 356888888878899999999999999999999999999999999999999999999999994 77899999
Q ss_pred Ec
Q 003536 811 FT 812 (812)
Q Consensus 811 fI 812 (812)
+|
T Consensus 312 ~v 313 (489)
T PRK14098 312 VI 313 (489)
T ss_pred Ee
Confidence 86
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=6.3e-50 Score=450.63 Aligned_cols=287 Identities=32% Similarity=0.566 Sum_probs=239.0
Q ss_pred CCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEE
Q 003536 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~ 588 (812)
+++|||+|||+|++|++|+||||||+++|+++|+++||+|.|++|+|++++.. ...+... ..+...+.+ .+++|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~ 75 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLA 75 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEE
Confidence 46799999999999999999999999999999999999999999999988532 1122111 111222222 467899
Q ss_pred EeeCCeeEEEeCCCCCCCCCcCCC-CCC------CCchHHHHHHHHHHHHHHHHHc--CCCCCEEEEcCcccchHHHHHH
Q 003536 589 STIEGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYW 659 (812)
Q Consensus 589 ~~v~GV~VYfLd~~~ps~~F~R~~-lYG------~~Dd~~RfifFsrAaLelLkkl--g~kPDIIH~HDWhTA~Vapl~l 659 (812)
+..+||++|||+++ .||.|.+ +|+ +.||++||+|||+|++++++.. +++|||||||||||+++ +.++
T Consensus 76 ~~~~~v~~~~~~~~---~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~-~~~l 151 (485)
T PRK14099 76 ARAGGLDLFVLDAP---HLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA-PAYL 151 (485)
T ss_pred EEeCCceEEEEeCh---HhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH-HHHH
Confidence 99999999999964 3888875 885 3589999999999999998764 68999999999999999 4555
Q ss_pred HHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-
Q 003536 660 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE- 738 (812)
Q Consensus 660 k~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE- 738 (812)
+. . ...++|+|+|+||+.|||.++...+..+|++++.+. +++++ +++.+|+++.++.+||+|||||++|+++
T Consensus 152 ~~-~--~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~i~~ad~vitVS~~~a~ei 224 (485)
T PRK14099 152 HY-S--GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVE---YYGGIGYLKAGLQLADRITTVSPTYALEI 224 (485)
T ss_pred Hh-C--CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhh---hCCCccHHHHHHHhcCeeeecChhHHHHH
Confidence 42 1 124689999999999999998877777888877653 33333 5677899999999999999999999998
Q ss_pred ----hccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 739 ----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 739 ----~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
+|.|++++++.+..++.+|+||||++.|+|.+|+.++.+|+.+++++|..||.++++++||+. +++.|+||+|
T Consensus 225 ~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~li~~V 301 (485)
T PRK14099 225 QGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDP-DPDALLLGVI 301 (485)
T ss_pred hcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCc-ccCCcEEEEE
Confidence 366787788888899999999999999999999999999999999999999999999999984 6678999985
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.2e-47 Score=426.81 Aligned_cols=289 Identities=46% Similarity=0.751 Sum_probs=242.8
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||+|||+|++|++|+||||+||++|+++|+++||+|+|++|.|+++..... ............+.|+.+.++||...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVD-DQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhc-cCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999998754321 111122223445677788999999999
Q ss_pred CCeeEEEeCCCCCCCCCcCC-CCCC--CCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCC
Q 003536 592 EGLPVYFIEPHHPDKFFWRG-QFYG--EHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~-~lYG--~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~ 668 (812)
+||++|||+++ .+|.|+ .+|+ +.|+..||++|++++++++++.+++|||||||||||++++.++...+. ..
T Consensus 80 ~~v~~~~i~~~---~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDNP---SLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEECH---HHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 99999999964 278884 5998 578999999999999999998889999999999999999544433321 11
Q ss_pred CCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-----hccCc
Q 003536 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGL 743 (812)
Q Consensus 669 ~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-----~G~GL 743 (812)
++|+|+|+||+.|+|.++...+..+|++...+. .+.++ +++.+|+++.++.+||+|+|||++|+++ +|.|+
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLE---FYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhh---cCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 599999999999999998877777788765542 22333 4568999999999999999999999998 45677
Q ss_pred ccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 744 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 744 ~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
+.++..+..++.+|+||||++.|+|.+|+.++.+|+++++++|..+|..+++++|++. +++.|+|+||
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~~i~~v 297 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPV-DDDVPLFGVI 297 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCc-cCCCCEEEEE
Confidence 7777778899999999999999999999999999999999999999999999999994 5688999986
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.4e-47 Score=425.31 Aligned_cols=281 Identities=40% Similarity=0.654 Sum_probs=236.1
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEE--
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS-- 589 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~-- 589 (812)
|||+|||+|++|++|+||||+||++|+++|+++||+|+|++|.|+.+.... .+.. .+ ... ..++||.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~--~~-~~~------~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQ--VV-GRL------DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCce--EE-EEe------eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999998764321 1111 01 110 12567777
Q ss_pred eeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCC
Q 003536 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (812)
Q Consensus 590 ~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~ 669 (812)
.++||+||||+++ .+|.|+.+|++.|++.||++||+++++++++.+++|||||||||||+++|.++...| ..++.+
T Consensus 71 ~~~gv~v~~v~~~---~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDAP---HLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeCH---HHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 4589999999963 389999999988999999999999999999888899999999999999965554444 334557
Q ss_pred CcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-----hccCcc
Q 003536 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGLH 744 (812)
Q Consensus 670 iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-----~G~GL~ 744 (812)
+|+|+|+||+.|+|.++...+..+|++++.+. .+.++ +++.+|+++.++.+||+|||||+.|+++ +|+|++
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLE---FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhh---cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 99999999999999998877777888776542 33333 4567899999999999999999999988 456777
Q ss_pred cccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 745 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 745 ~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
+.+..+..|+.+||||||++.|+|.+|+.++.+|+..++++|..||..+++++|++. ++.|+|+||
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~--~~~~~i~~v 288 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPD--DDAPLFAMV 288 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCC--CCCcEEEEe
Confidence 777778899999999999999999999999999999999999999999999999983 468999886
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.2e-47 Score=454.83 Aligned_cols=323 Identities=43% Similarity=0.739 Sum_probs=252.8
Q ss_pred CCCHHHHHHHHhcchhhhHH-------hhcCcHHHHHHHHHHHhhcCcchhHhhhhhhhhh---hhhHHhhhhc------
Q 003536 440 DMPWEFWSRLLLIIDGWLLE-------KKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNE---HEAISTFLKL------ 503 (812)
Q Consensus 440 ~m~~~~~~~lLL~id~~~l~-------~~~~~~e~~~l~~~v~~~~~~~~d~y~~~~~~~~---~e~~~~~~~~------ 503 (812)
...+|+|.+.-. ++|... +|..+++...++-.|. .+.|+||+...+.+ ...+++-.++
T Consensus 505 ~~~~ev~~~g~~--NrWth~~~~~~~~~m~~~~~g~~~~a~v~----vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v 578 (1036)
T PLN02316 505 NGKPEVWFRGSF--NRWTHRLGPLPPQKMVPADNGSHLKATVK----VPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPV 578 (1036)
T ss_pred CCCceEEEEccc--cCcCCCCCCCCceeeeecCCCceEEEEEE----ccccceEEEEEEecCCCCCCcCCCCCcCCcccc
Confidence 456788887776 666543 3444555544444444 67889998543322 2234443333
Q ss_pred -cCCCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCcee
Q 003536 504 -TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582 (812)
Q Consensus 504 -~~~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~ 582 (812)
.+.++.++|||+|||+|++|++|+||||+||++|+++|+++||+|+||+|.|+++.......+ .......+.| .
T Consensus 579 ~g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~---~~~~~~~~~~--~ 653 (1036)
T PLN02316 579 FGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDL---HYQRSYSWGG--T 653 (1036)
T ss_pred cCCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccc---eEEEEeccCC--E
Confidence 356677899999999999999999999999999999999999999999999998754322222 1111112223 2
Q ss_pred eeEEEEEeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHh
Q 003536 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLY 662 (812)
Q Consensus 583 ~~~Vw~~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y 662 (812)
.++||.+.++||++|||+++ ..+|+++.+|+++||+.||+|||+++++++++.+++|||||||||||+++|.+++..|
T Consensus 654 ~~~v~~~~~~GV~vyfl~~~--~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~ 731 (1036)
T PLN02316 654 EIKVWFGKVEGLSVYFLEPQ--NGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHY 731 (1036)
T ss_pred EEEEEEEEECCcEEEEEecc--ccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhh
Confidence 57899999999999999964 2589999999999999999999999999999999999999999999999965555555
Q ss_pred ccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-hcc
Q 003536 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQ 741 (812)
Q Consensus 663 ~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-~G~ 741 (812)
...++.++|+|+|+||+.|++ ++++.++.+||+||||||+|+++ .+.
T Consensus 732 ~~~~~~~~p~V~TiHnl~~~~--------------------------------n~lk~~l~~AD~ViTVS~tya~EI~~~ 779 (1036)
T PLN02316 732 AHYGLSKARVVFTIHNLEFGA--------------------------------NHIGKAMAYADKATTVSPTYSREVSGN 779 (1036)
T ss_pred hhhccCCCCEEEEeCCcccch--------------------------------hHHHHHHHHCCEEEeCCHHHHHHHHhc
Confidence 444567899999999986542 23567899999999999999998 221
Q ss_pred CcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCc-cchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 742 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-QGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 742 GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl-~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
..+..+..|++|||||||++.|+|.+|++++.+|+++++ .||..||.+||+++||+. ++.|+||||
T Consensus 780 ---~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~--~d~plVg~V 846 (1036)
T PLN02316 780 ---SAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ--ADLPLVGII 846 (1036)
T ss_pred ---cCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc--ccCeEEEEE
Confidence 124445789999999999999999999999999999885 799999999999999983 478999997
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-46 Score=421.61 Aligned_cols=288 Identities=39% Similarity=0.605 Sum_probs=237.0
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCccccccccc-ccceeEEEeeecCCceeeeEEEEEe
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDD-LRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~-L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
|||+++|+|+.|++|+||||+++++|+++|.+.|++|+|++|.|+.+... ..+ ++.+ ......+.++...+.+....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKE-WRDLLKVV-GKFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhh-hcccccee-eEeeeeecccceEEEEEeec
Confidence 89999999999999999999999999999999999999999999955432 211 1111 00111223333233333333
Q ss_pred eC-CeeEEEeCCCCCCCCCcC--CCCCCCCchHHHHHHHHHHHHHHHHHcC--CCCCEEEEcCcccchHHHHHHH-Hhcc
Q 003536 591 IE-GLPVYFIEPHHPDKFFWR--GQFYGEHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWD-LYVP 664 (812)
Q Consensus 591 v~-GV~VYfLd~~~ps~~F~R--~~lYG~~Dd~~RfifFsrAaLelLkklg--~kPDIIH~HDWhTA~Vapl~lk-~y~~ 664 (812)
.. |+++|+|+++ .+|+| ...|++.|+.+||++|+.++++++.... +.|||||||||||++++ .+++ .|
T Consensus 79 ~~~~v~~~lid~~---~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~-~~lk~~~-- 152 (487)
T COG0297 79 KDGGVDLYLIDNP---ALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLP-AYLKQRY-- 152 (487)
T ss_pred ccCCCcEEEecCh---hhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHH-HHHhhcc--
Confidence 23 4999999964 38888 3788889999999999999999987665 68999999999999994 5544 33
Q ss_pred CCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-----h
Q 003536 665 KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----G 739 (812)
Q Consensus 665 ~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-----~ 739 (812)
.+...+|+||||||+.|||.++......+|+|...+. .+.++ +++.++++|+|+.+||+||||||+|++| +
T Consensus 153 ~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~---~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~ 228 (487)
T COG0297 153 RSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE---FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEY 228 (487)
T ss_pred cccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee---ecCcchhhhhhheeccEEEEECHHHHHhhccccc
Confidence 2245899999999999999998656667899876655 55554 4577899999999999999999999999 7
Q ss_pred ccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 740 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 740 G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
|+|+++++.....+++||.||||.+.|+|.+|++++.+|+.+++.+|..||.+||+.+||+ ++.+.|++++|
T Consensus 229 g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~-~~~~~pl~~~v 300 (487)
T COG0297 229 GEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLD-VDLPGPLFGFV 300 (487)
T ss_pred cccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCC-CCCCCcEEEEe
Confidence 8999999998889999999999999999999999999999999989999999999999999 47788999986
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=3.4e-44 Score=396.36 Aligned_cols=292 Identities=43% Similarity=0.700 Sum_probs=237.8
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||+|||+|++|++|+||||+++++|+++|+++||+|+|++|.|++........+. ....+...+.++.+.+++|...++
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLL-VLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeE-EEEEEeeccCCceeEEEEEEEEeC
Confidence 6999999999999999999999999999999999999999999987543221111 111123456677788999999999
Q ss_pred CeeEEEeCCCCCCCCCcCCC-----CCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCC
Q 003536 593 GLPVYFIEPHHPDKFFWRGQ-----FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~-----lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl 667 (812)
||++|+++++. +|.+.. .|++.|+..||++|++++++++++.+.+|||||||||||++++.+++..+....+
T Consensus 80 gv~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDNPD---YFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcChH---HcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 99999998642 555543 4666788999999999999999988899999999999999995444444322234
Q ss_pred CCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-----hccC
Q 003536 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQG 742 (812)
Q Consensus 668 ~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-----~G~G 742 (812)
.++|+|||+||+.++|.++...+..++++..... .+.+..++..+++++.++.+||.|||||++|+++ +|+|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELF---HIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchh---hhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 6899999999999999888776665555432111 1222235677899999999999999999999998 4567
Q ss_pred cccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 743 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 743 L~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
++.++..+..++.+|+||||++.|+|..++.++..|+.+++.+|..+|.++++++|++. +++.|+|+||
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~-~~~~~~i~~v 302 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPV-DPDAPLFGFV 302 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCc-CCCCCEEEEE
Confidence 77777777899999999999999999999999999999899999999999999999983 5688999985
No 9
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=4.4e-45 Score=378.46 Aligned_cols=225 Identities=43% Similarity=0.739 Sum_probs=169.2
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc--cccccce------eEEEeeecCCceeee
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRAL------DVVVESYFDGRLFKN 584 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~--i~~L~gv------~V~V~s~fdG~~~~~ 584 (812)
||+|||+|++|++|+||||+++++|+++|+++||+|+||+|.|+.+.... ...+..+ .+.+. . .+.+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~----~-~~~~ 75 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVG----V-WYEV 75 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE---------E
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccc----c-ceEE
Confidence 79999999999999999999999999999999999999999998776532 1111000 11111 1 1567
Q ss_pred EEEEEeeCCeeEEEeCCCCCCCCCcCCCCCCC-----CchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHH
Q 003536 585 KVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 659 (812)
Q Consensus 585 ~Vw~~~v~GV~VYfLd~~~ps~~F~R~~lYG~-----~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~l 659 (812)
+||+...+||++|||+++ .+|+|..+|+. .|++.||++||+++++++++++++||||||||||||++|.+++
T Consensus 76 ~v~~~~~~~v~v~~i~~~---~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk 152 (245)
T PF08323_consen 76 RVYRYPVDGVPVYFIDNP---EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLK 152 (245)
T ss_dssp EEEEEEETTEEEEEEESH---HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHH
T ss_pred EEEEEEcCCccEEEecCh---hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhc
Confidence 899999999999999964 38899999975 6899999999999999999988999999999999999954444
Q ss_pred HHhccC-CCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh
Q 003536 660 DLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE 738 (812)
Q Consensus 660 k~y~~~-gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE 738 (812)
..+... .+.++|+||||||++|||.++...+..+|+|+..+..++.++ +++.+|++++|+.+||+||||||+|++|
T Consensus 153 ~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~---~~~~in~lk~gi~~AD~v~TVS~~Ya~E 229 (245)
T PF08323_consen 153 ERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYE---FYGQINFLKAGIVYADKVTTVSPTYARE 229 (245)
T ss_dssp HCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTE---ETTEEEHHHHHHHHSSEEEESSHHHHHH
T ss_pred cccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccc---cccccCHHHHHHHhcCEeeeCCHHHHHH
Confidence 434332 466899999999999999999887788899987664455444 5789999999999999999999999999
Q ss_pred -----hccCcccccc
Q 003536 739 -----GGQGLHSTLN 748 (812)
Q Consensus 739 -----~G~GL~~lL~ 748 (812)
+|+||+++|+
T Consensus 230 i~~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 230 IQTPEFGEGLEGLLR 244 (245)
T ss_dssp TTSHHHHTT-HHHHH
T ss_pred HhCcccCCChHHHhc
Confidence 6889987763
No 10
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=9e-39 Score=375.59 Aligned_cols=352 Identities=20% Similarity=0.234 Sum_probs=268.8
Q ss_pred CCHHHHH-------HHHhcchhhhHHhhcCcHHHHHHHHHHHhhcCcchhHhhhhhhhhhhhhHHhhhhccCCCCCCCCe
Q 003536 441 MPWEFWS-------RLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLH 513 (812)
Q Consensus 441 m~~~~~~-------~lLL~id~~~l~~~~~~~e~~~l~~~v~~~~~~~~d~y~~~~~~~~~e~~~~~~~~~~~~~~~~MK 513 (812)
+.|+.|. ++|.+++...|+.++.++++...++.|+ ..++.||...+|+.+ .. ...+..
T Consensus 23 ~d~~lw~~~~~np~~~l~~~~~~~l~~~~~d~~f~~~~~~~~----~~~~~y~~~~~~~~~----------~~-~~~~~~ 87 (778)
T cd04299 23 LDPELWEETGHNPVLLLGEVSQERLEELAEDPEFLARYDRVL----EDFDAYLEEPTWYQG----------RN-DGEPLV 87 (778)
T ss_pred hCHHHHHHcCCChHHHHHhCCHHHHHHHhCCHHHHHHHHHHH----HHHHHHhccCccccc----------cc-cCCCCe
Confidence 5667776 6789999999999999999999999999 799999988888863 01 123445
Q ss_pred EEEEeccc-----CCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc------cccc----------cccc------
Q 003536 514 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM------QYDR----------IDDL------ 566 (812)
Q Consensus 514 IL~ISsE~-----aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i------~~~~----------i~~L------ 566 (812)
|+|||+|| .|+ ++||||..++++.++++++|.+++.|+-.|..- ..++ ...+
T Consensus 88 ~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~ 166 (778)
T cd04299 88 AAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVR 166 (778)
T ss_pred eEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEe
Confidence 66999997 476 799999999999999999999999999888651 1111 0000
Q ss_pred --cceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCC-CCcCC---CCCCCCchHHH---HHHHHHHHHHHHHHc
Q 003536 567 --RALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWRG---QFYGEHDDFRR---FSFFSRAALELLLQA 637 (812)
Q Consensus 567 --~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~-~F~R~---~lYG~~Dd~~R---fifFsrAaLelLkkl 637 (812)
+|-.+.+...++|+...++||...+++|++||++++.+.+ +|+|. .+||+ |+..| +++||+|++++++++
T Consensus 167 ~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-D~~~Rl~Qe~~Lg~agl~~Lr~l 245 (778)
T cd04299 167 DADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-DQETRIQQEILLGIGGVRALRAL 245 (778)
T ss_pred cCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-cHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223455667889888999999999999999999875443 67776 68986 77888 699999999999999
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccC-C--------CCCCcEEEEecCCccCC--CCChhhhh--------hcCCCcc
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELA--------SCGLDVQ 698 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~-g--------l~~iPvVfTIHNleyqG--~f~~~~L~--------~~GLp~e 698 (812)
+++||||||||||||++++-.++.+... + ..+..+|||+||+.++| .||.+.+. .+|++.+
T Consensus 246 g~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~ 325 (778)
T cd04299 246 GIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRD 325 (778)
T ss_pred CCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHH
Confidence 9999999999999999954222322211 1 23578999999999999 89987663 3688877
Q ss_pred cccCCcccccC-CCCCchhHHHHHHHHcCcEEecCcchh---hh-hccCcccccccCCCCeEEEeCCCCCCCCC-CCCch
Q 003536 699 QLNRPDRMQDN-SAHDRINPLKGAIVFSNIVTTVSPSYA---QE-GGQGLHSTLNFHSKKFVGILNGIDTDAWN-PATDT 772 (812)
Q Consensus 699 ~f~~~D~led~-~~~~~vNllK~AI~~AD~VITVSptyA---eE-~G~GL~~lL~~~~eKI~gIpNGID~d~Wn-P~tDk 772 (812)
.|... +++.. ..++.+||+++|+++|++||||||.|. ++ +. ++..-......+|.+|+||||+.+|. |..++
T Consensus 326 ~~~~l-g~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~-~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~ 403 (778)
T cd04299 326 RFLAL-GRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFA-GLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRE 403 (778)
T ss_pred HHhhh-ccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhh-hhhccCCcccCceeceeCCcchhhhcCHHHHH
Confidence 66432 33321 013579999999999999999999995 44 22 11111222467899999999999999 98888
Q ss_pred hhhhccC------------------cCC---ccchHHhHHHHHHHh---------------------CCCCCCCCCCEEE
Q 003536 773 FLKVQYN------------------AND---LQGKAENKESIRKHL---------------------GLSSADARKPLVK 810 (812)
Q Consensus 773 ~L~~~Ys------------------~dd---l~gK~~nK~aLqk~l---------------------GL~~~d~d~PLVG 810 (812)
.+....+ +.| |++|..||.+|++.+ |.+ .||+.|+||
T Consensus 404 l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~-ldpd~ltig 482 (778)
T cd04299 404 LYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDV-LDPNVLTIG 482 (778)
T ss_pred HHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCc-cCCCccEEe
Confidence 7743321 234 889999999998885 444 588999999
Q ss_pred Ec
Q 003536 811 FT 812 (812)
Q Consensus 811 fI 812 (812)
||
T Consensus 483 fa 484 (778)
T cd04299 483 FA 484 (778)
T ss_pred ee
Confidence 96
No 11
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=9.3e-38 Score=360.14 Aligned_cols=294 Identities=20% Similarity=0.203 Sum_probs=229.2
Q ss_pred EEEEeccc-----CCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc------cccc--c-----c---cc------
Q 003536 514 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM------QYDR--I-----D---DL------ 566 (812)
Q Consensus 514 IL~ISsE~-----aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i------~~~~--i-----~---~L------ 566 (812)
|+|+|+|| .|+ ++||||..+++..++++++|.+++.++-.|..- ..++ . . .+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 78999997 476 799999999999999999999999999888651 1111 0 0 00
Q ss_pred --cceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCC-CCcCC---CCCCCCchHHHH---HHHHHHHHHHHHHc
Q 003536 567 --RALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWRG---QFYGEHDDFRRF---SFFSRAALELLLQA 637 (812)
Q Consensus 567 --~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~-~F~R~---~lYG~~Dd~~Rf---ifFsrAaLelLkkl 637 (812)
.|-.+.+...++|+...+++|...++++++||++++.+++ +|.|. .+||+ |+..|+ +|||+|++++++++
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~-D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG-DKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 1212345566788888999999999999999999765443 78886 68985 555665 99999999999999
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccCC--------CCCCcEEEEecCCccCCC--CChhhhh--------hcCCCccc
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKG--------LNSARVCFTCHNFEYQGT--APAKELA--------SCGLDVQQ 699 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~g--------l~~iPvVfTIHNleyqG~--f~~~~L~--------~~GLp~e~ 699 (812)
+++||||||||||||++++.+++.....+ ..+.++|||+||+.|+|+ |+.+.+. .+|++.+.
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 99999999999999999544333321111 125779999999999997 9877663 37888776
Q ss_pred ccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh----hccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhh
Q 003536 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLK 775 (812)
Q Consensus 700 f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE----~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~ 775 (812)
|.. .+.+....++.+||+++|+.+||+||||||.|++- ++ .+...+..+..+|.+|+||||+.+|+|.+|+.|+
T Consensus 239 ~~~-~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~-~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~ 316 (601)
T TIGR02094 239 LLA-LGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQ-FLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLY 316 (601)
T ss_pred HHh-hhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHH-hhhhhcccccCCccceeCCccccccCCHHHHHHH
Confidence 542 23331111367999999999999999999999984 22 1223345566789999999999999999999999
Q ss_pred hccCcCC----------------------ccchHHhHHHHHH---------------------HhCCCCCCCCCCEEEEc
Q 003536 776 VQYNAND----------------------LQGKAENKESIRK---------------------HLGLSSADARKPLVKFT 812 (812)
Q Consensus 776 ~~Ys~dd----------------------l~gK~~nK~aLqk---------------------~lGL~~~d~d~PLVGfI 812 (812)
.+|..++ |++|..||.+|++ ++|++ .+++.|++|||
T Consensus 317 ~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~-~dpd~~~ig~v 395 (601)
T TIGR02094 317 ERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRF-LDPDVLTIGFA 395 (601)
T ss_pred HHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccc-cCCCCcEEEEE
Confidence 9999988 5899999999999 58888 58999999996
No 12
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.69 E-value=6.1e-16 Score=183.42 Aligned_cols=276 Identities=16% Similarity=0.148 Sum_probs=157.9
Q ss_pred hhhhhhhHHhhhhccCCCCCCCCeEEEEeccc----CCcc---cCCCHHHHHHHHHHHH--------HHCCC----eEEE
Q 003536 490 EKNEHEAISTFLKLTSSSISSGLHVIHIAAEM----APVA---KVGGLGDVVAGLGKAL--------QKKGH----LVEI 550 (812)
Q Consensus 490 ~~~~~e~~~~~~~~~~~~~~~~MKIL~ISsE~----aP~a---KvGGLGdVV~~LsKAL--------qklGh----eV~V 550 (812)
+..+...++.|++.... .|||++||.++ .|.. -+||...||.+|+++| +++|| .|+|
T Consensus 238 ~~p~~~~~e~f~~~~p~----~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I 313 (784)
T TIGR02470 238 EAPDPSVLEAFLGRIPM----VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILI 313 (784)
T ss_pred hCCChhHHHHHHhhCCc----cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEE
Confidence 33455556666544332 49999999998 3321 1799999999999985 68999 6779
Q ss_pred EecCCCccccccc-ccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCC-----CCCcCCCCCCCCchHHHHH
Q 003536 551 VLPKYDCMQYDRI-DDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-----KFFWRGQFYGEHDDFRRFS 624 (812)
Q Consensus 551 ItPkY~~i~~~~i-~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps-----~~F~R~~lYG~~Dd~~Rfi 624 (812)
+|+..+....... ..++ . ..| ..|+.++.++.+... +|..+..++++ ..
T Consensus 314 ~TR~~~~~~~~~~~~~~e---~-----~~~-----------~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~------l~ 368 (784)
T TIGR02470 314 VTRLIPDAEGTTCNQRLE---K-----VYG-----------TEHAWILRVPFRTENGIILRNWISRFEIWPY------LE 368 (784)
T ss_pred EecCCCCccccccccccc---c-----ccC-----------CCceEEEEecCCCCcccccccccCHHHHHHH------HH
Confidence 9987642211000 0000 0 011 245566655532110 12223223222 23
Q ss_pred HHHHHHHHHHH-HcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCC
Q 003536 625 FFSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRP 703 (812)
Q Consensus 625 fFsrAaLelLk-klg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~ 703 (812)
-|+..+++.+. ..+.+|||||+|.|.++++|..+... .++|.|+|.|+++..... ..|+.+.. +
T Consensus 369 ~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~------lgVP~v~t~HsL~~~K~~------~~g~~~~~---~ 433 (784)
T TIGR02470 369 TFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARK------LGVTQCTIAHALEKTKYP------DSDIYWQE---F 433 (784)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHh------cCCCEEEECCcchhhccc------cccccccc---c
Confidence 46667776554 34678999999999999996544332 589999999998533211 01111100 0
Q ss_pred cccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-----hccCcc------ccc------ccCCCCeEEEeCCCCCCCC
Q 003536 704 DRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGLH------STL------NFHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 704 D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-----~G~GL~------~lL------~~~~eKI~gIpNGID~d~W 766 (812)
+ ..+....++.....++..||+|||+|+..... ..|+.+ ++. ..+..|+.+||+|+|++.|
T Consensus 434 e--~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF 511 (784)
T TIGR02470 434 E--DKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIY 511 (784)
T ss_pred h--hHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhc
Confidence 0 00001123344668899999999999754221 111111 111 2255788999999999888
Q ss_pred CCCCchhhhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 767 NPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 767 nP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
.|.+++.-...-....++.-.-++..+++.+|+.. +++.|+|++|
T Consensus 512 ~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~-d~~kpiIl~V 556 (784)
T TIGR02470 512 FPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLK-DPNKPIIFSM 556 (784)
T ss_pred CCCCchhhhhhhhhcchhhhccchhhHHHHhCCCC-CCCCcEEEEE
Confidence 88654321100000112223347778889999863 6788999875
No 13
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.66 E-value=4.8e-15 Score=164.87 Aligned_cols=198 Identities=20% Similarity=0.281 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHHCCC--eEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCC
Q 003536 527 VGGLGDVVAGLGKALQKKGH--LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP 604 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGh--eV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~p 604 (812)
+||.+.++.+|+++|++.|| +|+|+|+.++...... .. .. .+.....|++++.++.. +
T Consensus 25 ~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~--~~-----------~~------~~~~~~~gv~v~r~~~~-~ 84 (439)
T TIGR02472 25 TGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP--DY-----------AQ------PIERIAPGARIVRLPFG-P 84 (439)
T ss_pred CCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC--cc-----------CC------CeeEeCCCcEEEEecCC-C
Confidence 79999999999999999997 9999998764211000 00 00 01122468888877531 1
Q ss_pred CCCCcCCCCCCCCchHH-HHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCC
Q 003536 605 DKFFWRGQFYGEHDDFR-RFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQG 683 (812)
Q Consensus 605 s~~F~R~~lYG~~Dd~~-RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG 683 (812)
..|....+.. ...+|+.+..+++++.+.+|||||||+|++++++.++.+. .++|+|+|+|+.....
T Consensus 85 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~------~~~p~V~t~H~~~~~~ 151 (439)
T TIGR02472 85 -------RRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRL------LGVPLIFTGHSLGREK 151 (439)
T ss_pred -------CCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHH------hCCCEEEecccccchh
Confidence 0111101111 1245666777777765568999999999988885444332 4789999999763211
Q ss_pred CCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCC
Q 003536 684 TAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGID 762 (812)
Q Consensus 684 ~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID 762 (812)
...+...|..+..+. .+ +.....+.+++.++..||.||++|+....+ +.. ....+..|+.+||||||
T Consensus 152 ---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~ki~vIpnGvd 219 (439)
T TIGR02472 152 ---RRRLLAAGLKPQQIE---KQ--YNISRRIEAEEETLAHASLVITSTHQEIEEQYAL----YDSYQPERMQVIPPGVD 219 (439)
T ss_pred ---hhhcccCCCChhhhh---hh--cchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHh----ccCCCccceEEECCCcC
Confidence 011111121111110 00 001223345678899999999999865544 110 01235679999999999
Q ss_pred CCCCCCC
Q 003536 763 TDAWNPA 769 (812)
Q Consensus 763 ~d~WnP~ 769 (812)
++.|.|.
T Consensus 220 ~~~f~~~ 226 (439)
T TIGR02472 220 LSRFYPP 226 (439)
T ss_pred hhhcCCC
Confidence 9999875
No 14
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.66 E-value=2.5e-15 Score=181.72 Aligned_cols=237 Identities=17% Similarity=0.130 Sum_probs=140.0
Q ss_pred CCCCCCCeEEEEecccCCc---------ccCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCccc--ccccccccceeEE
Q 003536 506 SSISSGLHVIHIAAEMAPV---------AKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQ--YDRIDDLRALDVV 572 (812)
Q Consensus 506 ~~~~~~MKIL~ISsE~aP~---------aKvGGLGdVV~~LsKALqklG--heV~VItPkY~~i~--~~~i~~L~gv~V~ 572 (812)
..+.++|.|+||+....|. .-+||+..||.+|+++|+++| |.|+|+|+...... ...-...+.+.-
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~- 242 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTP- 242 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccc-
Confidence 3456789999999886542 337999999999999999998 89999998764211 000000000000
Q ss_pred EeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHc------------CCC
Q 003536 573 VESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA------------GKQ 640 (812)
Q Consensus 573 V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkkl------------g~k 640 (812)
.. .++-. ......+|+.++.|+.+.+..|..+..+.+ ...-|..++++++.+. +..
T Consensus 243 ~~--~~~~~----~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~------~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~ 310 (1050)
T TIGR02468 243 RS--SENDG----DEMGESSGAYIIRIPFGPRDKYIPKEELWP------YIPEFVDGALSHIVNMSKVLGEQIGSGHPVW 310 (1050)
T ss_pred cc--ccccc----ccccCCCCeEEEEeccCCCCCCcCHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhccccCCC
Confidence 00 00000 011224688888887542112333332222 2334667777766531 124
Q ss_pred CCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCC-CcccccCCcccccCCCCCchhHHH
Q 003536 641 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGL-DVQQLNRPDRMQDNSAHDRINPLK 719 (812)
Q Consensus 641 PDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GL-p~e~f~~~D~led~~~~~~vNllK 719 (812)
|||||+|+|.++.+|..+... .++|+|+|.|+++... ...+-.-|. +.+... ..+....++..+.
T Consensus 311 pDvIHaHyw~sG~aa~~L~~~------lgVP~V~T~HSLgr~K---~~~ll~~g~~~~~~~~-----~~y~~~~Ri~~Ee 376 (1050)
T TIGR02468 311 PYVIHGHYADAGDSAALLSGA------LNVPMVLTGHSLGRDK---LEQLLKQGRMSKEEIN-----STYKIMRRIEAEE 376 (1050)
T ss_pred CCEEEECcchHHHHHHHHHHh------hCCCEEEECccchhhh---hhhhcccccccccccc-----cccchHHHHHHHH
Confidence 999999999999996544332 5899999999874111 000001111 100000 0000124567789
Q ss_pred HHHHHcCcEEecCcchhhh----hcc---Ccccccc-----------cCCCCeEEEeCCCCCCCCCCC
Q 003536 720 GAIVFSNIVTTVSPSYAQE----GGQ---GLHSTLN-----------FHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 720 ~AI~~AD~VITVSptyAeE----~G~---GL~~lL~-----------~~~eKI~gIpNGID~d~WnP~ 769 (812)
.++..||+|||+|+...++ |+. +|...|+ ....++.+||||||++.|.|.
T Consensus 377 ~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~ 444 (1050)
T TIGR02468 377 LSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPH 444 (1050)
T ss_pred HHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCC
Confidence 9999999999999999887 221 0111111 113499999999999999985
No 15
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.61 E-value=1.1e-14 Score=157.68 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=118.0
Q ss_pred EEEEecccCCcc-----cCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEE
Q 003536 514 VIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (812)
Q Consensus 514 IL~ISsE~aP~a-----KvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~ 588 (812)
|++++....|.. ..||.+.++.+|+++|.++||+|+|+++.+...... . .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~----~--~------------------- 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP----V--V------------------- 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC----c--c-------------------
Confidence 678888887752 269999999999999999999999999865321100 0 0
Q ss_pred EeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHH-HHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCC
Q 003536 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (812)
Q Consensus 589 ~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaL-elLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl 667 (812)
...+|++++.+.... +.. .+...-...+..|....+ .++++...+|||||+|+|.+++++.++.+.
T Consensus 56 ~~~~~~~v~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~------ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAGP---YEG----LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDR------ 122 (405)
T ss_pred ccCCCcEEEEecCCC---ccc----CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHh------
Confidence 012466666554210 100 000000111222333444 444444568999999999988775443332
Q ss_pred CCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccccc
Q 003536 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL 747 (812)
Q Consensus 668 ~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL 747 (812)
.++|+|+|+|+..+... ..+..... +.. ....-+++..+..||.|+++|+...+.+ ....
T Consensus 123 ~~~p~v~t~h~~~~~~~---~~~~~~~~-------~~~------~~~~~~e~~~~~~~d~vi~~s~~~~~~~----~~~~ 182 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVKN---AALADGDT-------PEP------EARRIGEQQLVDNADRLIANTDEEARDL----VRHY 182 (405)
T ss_pred cCCCEEEeccchHHHHH---HhccCCCC-------Cch------HHHHHHHHHHHHhcCeEEECCHHHHHHH----HHHc
Confidence 47999999998632110 00000000 000 0011234567889999999999877761 1112
Q ss_pred ccCCCCeEEEeCCCCCCCCCCC
Q 003536 748 NFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 748 ~~~~eKI~gIpNGID~d~WnP~ 769 (812)
..+..++.+||||||.+.|.|.
T Consensus 183 ~~~~~ki~vi~ngvd~~~~~~~ 204 (405)
T TIGR03449 183 DADPDRIDVVAPGADLERFRPG 204 (405)
T ss_pred CCChhhEEEECCCcCHHHcCCC
Confidence 2345789999999999988775
No 16
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.61 E-value=7.5e-15 Score=168.75 Aligned_cols=233 Identities=20% Similarity=0.227 Sum_probs=131.2
Q ss_pred EEEEecccCCcccCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCcccccccccccceeEEE----ee-ecCCceeeeEEE
Q 003536 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVVV----ES-YFDGRLFKNKVW 587 (812)
Q Consensus 514 IL~ISsE~aP~aKvGGLGdVV~~LsKALqk-lGheV~VItPkY~~i~~~~i~~L~gv~V~V----~s-~fdG~~~~~~Vw 587 (812)
+.=+|||..- |+||+=.|+..=++.+++ .|-...+|+|........+++.+..-+..+ .. .-.|-.+.+.-|
T Consensus 4 lfE~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW 81 (590)
T cd03793 4 LFEVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRW 81 (590)
T ss_pred EEEEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEE
Confidence 3457888765 699999999888877765 588899999987632111111110000000 00 001111112223
Q ss_pred EEeeCCee-EEEeCCCCCCCCCcC--------------CCC--CCCCchHHHHHHHHHHHHHHHHH---c--CCCCCEEE
Q 003536 588 VSTIEGLP-VYFIEPHHPDKFFWR--------------GQF--YGEHDDFRRFSFFSRAALELLLQ---A--GKQPDIIH 645 (812)
Q Consensus 588 ~~~v~GV~-VYfLd~~~ps~~F~R--------------~~l--YG~~Dd~~RfifFsrAaLelLkk---l--g~kPDIIH 645 (812)
- ++|-| |.++|... ++++ +.+ |+.++++. +|+.++..++.. . ..+|||+|
T Consensus 82 ~--i~G~P~viL~D~~~---~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~---~fgy~~~~~i~~~~~~~~~~~~dViH 153 (590)
T cd03793 82 L--IEGYPKVVLFDIGS---AAWKLDEWKGELWELCGIGSPEGDRETNDAI---IFGFLVAWFLGEFAEQFDDEPAVVAH 153 (590)
T ss_pred E--cCCCCeEEEEeCch---hhhhHHHHHHHHHHHcCCCCCCCCCcchHHH---HHHHHHHHHHHHHHhhccCCCCeEEE
Confidence 2 34544 55666421 2221 122 22234443 455555444432 2 35799999
Q ss_pred EcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhc-CCCcccccCCcc-cccCCCCCchhHHHHHHH
Q 003536 646 CHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDR-MQDNSAHDRINPLKGAIV 723 (812)
Q Consensus 646 ~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~-GLp~e~f~~~D~-led~~~~~~vNllK~AI~ 723 (812)
+|||++++++ ++++++ ..++|+|||+|.+.+.+.......... .++ .+ ..|. ..+...+.+..+++.+..
T Consensus 154 ~HeWm~g~a~-~~lK~~----~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~--~~-~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 154 FHEWQAGVGL-PLLRKR----KVDVSTIFTTHATLLGRYLCAGNVDFYNNLD--YF-DVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred EcchhHhHHH-HHHHHh----CCCCCEEEEecccccccccccCCcccchhhh--hc-chhhhhhcccchHHHHHHHHHHh
Confidence 9999999985 444532 257999999998875442111000000 000 00 0010 000112455568999999
Q ss_pred HcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 003536 724 FSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 724 ~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~t 770 (812)
.||.+||||+..+.| +..+++.+.++ +||||||++.|.+..
T Consensus 226 ~Ad~fttVS~it~~E----~~~Ll~~~pd~--ViPNGid~~~f~~~~ 266 (590)
T cd03793 226 CAHVFTTVSEITAYE----AEHLLKRKPDV--VLPNGLNVKKFSALH 266 (590)
T ss_pred hCCEEEECChHHHHH----HHHHhCCCCCE--EeCCCcchhhcccch
Confidence 999999999999999 33455556666 999999999998753
No 17
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.57 E-value=1.3e-13 Score=150.67 Aligned_cols=208 Identities=15% Similarity=0.113 Sum_probs=118.2
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||++|+..|+|. .||.|.++.+|+++|.+.||+|+|++|.... +.. .... .+++..+ -....
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~-~~~---~~~~-------~~~~~~~----~~~~~ 63 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYY-PQW---RVGE-------GYSAWRY----RRESE 63 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCC-CCC---CCCc-------ccccccc----eeeec
Confidence 8999999999897 6999999999999999999999999975211 100 0000 0000000 01124
Q ss_pred CCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHH-HHHcCCCCCEEEEcCccc--chHHHHHHHHhccCCCC
Q 003536 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQT--AFVAPLYWDLYVPKGLN 668 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLel-Lkklg~kPDIIH~HDWhT--A~Vapl~lk~y~~~gl~ 668 (812)
+|++++.++... .... .+. ........|...++.. ++....+|||||+|.+.. ++++ +++.. ..
T Consensus 64 ~~i~v~r~~~~~----~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~-~~~~~-----~~ 130 (412)
T PRK10307 64 GGVTVWRCPLYV----PKQP--SGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGA-RLLAR-----LS 130 (412)
T ss_pred CCeEEEEccccC----CCCc--cHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHH-HHHHH-----hh
Confidence 678888764210 0000 000 0011122233333332 222236899999998642 3332 22222 24
Q ss_pred CCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccc
Q 003536 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (812)
Q Consensus 669 ~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~ 748 (812)
++|+|+++|+..+.. +-..|.....+ +. .-...+++.++..||.|+++|+...+.+. . ..
T Consensus 131 ~~~~v~~~~d~~~~~------~~~~~~~~~~~-----~~----~~~~~~~~~~~~~ad~ii~~S~~~~~~~~----~-~~ 190 (412)
T PRK10307 131 GARTWLHIQDYEVDA------AFGLGLLKGGK-----VA----RLATAFERSLLRRFDNVSTISRSMMNKAR----E-KG 190 (412)
T ss_pred CCCEEEEeccCCHHH------HHHhCCccCcH-----HH----HHHHHHHHHHHhhCCEEEecCHHHHHHHH----H-cC
Confidence 789999999753211 00111110000 00 00012567788899999999999887611 1 12
Q ss_pred cCCCCeEEEeCCCCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~WnP~ 769 (812)
....++.+||||||.+.|.|.
T Consensus 191 ~~~~~i~vi~ngvd~~~~~~~ 211 (412)
T PRK10307 191 VAAEKVIFFPNWSEVARFQPV 211 (412)
T ss_pred CCcccEEEECCCcCHhhcCCC
Confidence 345789999999999988875
No 18
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.5e-14 Score=167.68 Aligned_cols=363 Identities=18% Similarity=0.148 Sum_probs=237.4
Q ss_pred CCCCCCCCHHHHHHHH-------hcchhhhHHhhcCcHHHHHHHHHHHhhcCcchhHhhhhh-hhhhhhhHHhhhhccCC
Q 003536 435 HEPVDDMPWEFWSRLL-------LIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECK-EKNEHEAISTFLKLTSS 506 (812)
Q Consensus 435 ~~~~~~m~~~~~~~lL-------L~id~~~l~~~~~~~e~~~l~~~v~~~~~~~~d~y~~~~-~~~~~e~~~~~~~~~~~ 506 (812)
.....++.++-|...+ +..+-..+.....++++...+..++ ..+..||... .|... +.+ .
T Consensus 22 ~~~~~~~~~~~w~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~yy~s~----efL~grl~~~~l~n~g-~~~-------~ 89 (750)
T COG0058 22 GKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVYYLSM----EFLIGRLLGNNLWNLG-IYD-------D 89 (750)
T ss_pred ccChhhCCHHHHHHHhhHHHHHHHhcCHHHHHHhhcchhHHHHHHHHH----HHHHHHhhhcchhhhc-chH-------H
Confidence 3455668888888444 5566778888999999999999999 7788888765 44433 111 1
Q ss_pred CCCCCCeEEEEeccc-----CCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccc-----cc--c-----------
Q 003536 507 SISSGLHVIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQY-----DR--I----------- 563 (812)
Q Consensus 507 ~~~~~MKIL~ISsE~-----aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~-----~~--i----------- 563 (812)
.+...--+.+.++|+ .|. ..||||..+++..++++.+|.+.+.++-.|..--- ++ +
T Consensus 90 ~~~~l~~~~~~~~e~~~~e~~p~-lgGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~ 168 (750)
T COG0058 90 VQEALKELGYFLMEFGEHESDPG-LGGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGN 168 (750)
T ss_pred HHhhHHhhhccHHHHhhcccCcc-ccccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCC
Confidence 111122367777775 465 35999999999999999999999999988865210 11 0
Q ss_pred -cc-cc---ceeEEEeeecCC-ceeeeEEEEEeeCCeeEEEeCCCCCCC-CCcC---CCCCCCCc-hHHH---HHHHHHH
Q 003536 564 -DD-LR---ALDVVVESYFDG-RLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWR---GQFYGEHD-DFRR---FSFFSRA 629 (812)
Q Consensus 564 -~~-L~---gv~V~V~s~fdG-~~~~~~Vw~~~v~GV~VYfLd~~~ps~-~F~R---~~lYG~~D-d~~R---fifFsrA 629 (812)
.. .+ ++...+++...+ +...+++|...+..++++|.+...+++ ...+ ..+|+. | ...| ..||+.|
T Consensus 169 pwe~~r~~~a~~~d~~V~g~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~-Ds~elRl~Qeyfl~~a 247 (750)
T COG0058 169 PWEFLRDAEGVPYDVPVPGYDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPG-DSKELRLKQEYFLGSA 247 (750)
T ss_pred cceeecccCCceeeeeEEeccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCC-CcHHHHHhhhheeeeH
Confidence 00 01 121222223334 677899999999999999998654432 2222 368986 4 5555 6789999
Q ss_pred HHHHHHHcC------CCCCEEEEcCcccchHHHHHHHHhcc-CCC--------CCCcEEEEecCCccCC--CCChhhhhh
Q 003536 630 ALELLLQAG------KQPDIIHCHDWQTAFVAPLYWDLYVP-KGL--------NSARVCFTCHNFEYQG--TAPAKELAS 692 (812)
Q Consensus 630 aLelLkklg------~kPDIIH~HDWhTA~Vapl~lk~y~~-~gl--------~~iPvVfTIHNleyqG--~f~~~~L~~ 692 (812)
++..|.+.+ .++-+.|+||-|++++.+-+.+.... .|+ ...-++||.|++.+.| .||.+.+..
T Consensus 248 gvq~I~~~~~~~~~~~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~ 327 (750)
T COG0058 248 GVQDILARGHLEHHDLDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKK 327 (750)
T ss_pred HHHHHHHHhhhccccccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHH
Confidence 999998876 78889999999999996655553322 121 3445999999998887 466655432
Q ss_pred c-----C---------CCcccccCCcc-cccCCCCCchhHHHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEE
Q 003536 693 C-----G---------LDVQQLNRPDR-MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVG 756 (812)
Q Consensus 693 ~-----G---------Lp~e~f~~~D~-led~~~~~~vNllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~g 756 (812)
. + ++...+..+.. +.....-.-|+|...|++.|..|++||.-|.+- -.......-...+.||.-
T Consensus 328 ~lpr~~~ii~~in~~~l~~~~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~n 407 (750)
T COG0058 328 LLPRHLQIIYEINARFLPEVRLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINN 407 (750)
T ss_pred HhhhhhhhHHHHHhhhhHHHHhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCcccccc
Confidence 1 1 11111111100 000000011899999999999999999999876 111011111224789999
Q ss_pred EeCCCCCCCCCCCCchhhhhccCcCC---c------------------------cchHHhHHHH----HHHhCCCCCCCC
Q 003536 757 ILNGIDTDAWNPATDTFLKVQYNAND---L------------------------QGKAENKESI----RKHLGLSSADAR 805 (812)
Q Consensus 757 IpNGID~d~WnP~tDk~L~~~Ys~dd---l------------------------~gK~~nK~aL----qk~lGL~~~d~d 805 (812)
|+|||++.+|--...+.|...|+... | .-|..+|..| ..+.|+. ++|+
T Consensus 408 vTNGIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~-~~p~ 486 (750)
T COG0058 408 VTNGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIE-VDPN 486 (750)
T ss_pred ccCCcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cCCC
Confidence 99999999998655666666665431 1 1366677665 4478877 5899
Q ss_pred CCEEEEc
Q 003536 806 KPLVKFT 812 (812)
Q Consensus 806 ~PLVGfI 812 (812)
++.+|+|
T Consensus 487 ~lfd~~~ 493 (750)
T COG0058 487 ALFDGQA 493 (750)
T ss_pred cceeeee
Confidence 9998885
No 19
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.56 E-value=1.2e-13 Score=147.58 Aligned_cols=185 Identities=23% Similarity=0.258 Sum_probs=109.8
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||++|+..|+|. ..||.+.++..|+++|.+. ++|+|++...+.. . .
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~------~-------------------------~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF------D-------------------------S 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh------c-------------------------C
Confidence 8999999998886 4699999999999999987 7888877532210 0 1
Q ss_pred CCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCc
Q 003536 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iP 671 (812)
.|++++.+... . .+. +. .... ..+.... . +.....+|||||+|+|.+++++. .... +.++|
T Consensus 48 ~~~~~~~~~~~--~-~~~-----~~-~~~~--~~~~~~~-~-~~~~~~~~divh~~~~~~~~~~~-~~~~-----~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPW--S-ELK-----EA-NKAL--GTFSVDL-A-MANDPVDADVVHSHTWYTFLAGH-LAKK-----LYDKP 108 (388)
T ss_pred CCeEEEEecCh--h-hcc-----ch-hhhh--hhhhHHH-H-HhhCCCCCCeEeecchhhhhHHH-HHHH-----hcCCC
Confidence 23333322210 0 000 00 0000 0111111 1 11223579999999999887643 3222 24899
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccccc-ccC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL-NFH 750 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL-~~~ 750 (812)
+|+|+|+..+...+....+ +.. +. .. --+.+.++..||.|+++|+..++.. .... ...
T Consensus 109 ~v~~~h~~~~~~~~~~~~~---~~~---------~~---~~--~~~~~~~~~~ad~vi~~S~~~~~~~----~~~~~~~~ 167 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQL---GGG---------YK---LS--SWAEKTAIEAADRVIAVSGGMREDI----LKYYPDLD 167 (388)
T ss_pred EEEEeeccccccccccccc---ccc---------hh---HH--HHHHHHHHhhCCEEEEccHHHHHHH----HHHcCCCC
Confidence 9999998753321110000 000 00 00 1245778899999999999987751 1111 124
Q ss_pred CCCeEEEeCCCCCCCCCCC
Q 003536 751 SKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 751 ~eKI~gIpNGID~d~WnP~ 769 (812)
..++.+||||+|.+.|.|.
T Consensus 168 ~~~i~vi~ng~~~~~~~~~ 186 (388)
T TIGR02149 168 PEKVHVIYNGIDTKEYKPD 186 (388)
T ss_pred cceEEEecCCCChhhcCCC
Confidence 5789999999999988774
No 20
>PLN00142 sucrose synthase
Probab=99.55 E-value=5e-14 Score=167.59 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=158.2
Q ss_pred hhhhhhhHHhhhhccCCCCCCCCeEEEEecccC--Cc-----ccCCCHHHHHHHHH--------HHHHHCCCeEE----E
Q 003536 490 EKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--PV-----AKVGGLGDVVAGLG--------KALQKKGHLVE----I 550 (812)
Q Consensus 490 ~~~~~e~~~~~~~~~~~~~~~~MKIL~ISsE~a--P~-----aKvGGLGdVV~~Ls--------KALqklGheV~----V 550 (812)
+..+...++.|++.... -|+|++||...+ |. .-+||.-.||.+++ ++|+.+||+|+ |
T Consensus 262 ~~p~~~~~e~f~~~~p~----~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i 337 (815)
T PLN00142 262 QAPDPSTLEKFLGRIPM----VFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILI 337 (815)
T ss_pred hCCChhHHHHHHhhhhH----hHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEE
Confidence 33445555555543221 478999988853 21 23799999997655 67788999885 8
Q ss_pred EecCCCccccccc-ccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCC----CCCcCCCCCCCCchHHHHHH
Q 003536 551 VLPKYDCMQYDRI-DDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD----KFFWRGQFYGEHDDFRRFSF 625 (812)
Q Consensus 551 ItPkY~~i~~~~i-~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps----~~F~R~~lYG~~Dd~~Rfif 625 (812)
+|+.......... ..++ . ..| ..|+.+..++.+... .+..+..++++ ..-
T Consensus 338 ~TR~i~~~~~~~~~~~~e---~-----v~~-----------~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~------L~~ 392 (815)
T PLN00142 338 VTRLIPDAKGTTCNQRLE---K-----VSG-----------TEHSHILRVPFRTEKGILRKWISRFDVWPY------LET 392 (815)
T ss_pred EEeccCCccCCcccCcce---e-----ccC-----------CCceEEEecCCCCCccccccccCHHHHHHH------HHH
Confidence 8876542211000 0000 0 011 235556555533110 12233333332 224
Q ss_pred HHHHHHHHHH-HcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 626 FSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 626 FsrAaLelLk-klg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
|+..+++.+. ..+..|||||+|+|.+++||..+... .++|.|+|.|.++-.... .-|+.+..+ +
T Consensus 393 f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~~------~~~~~~~~~---e 457 (815)
T PLN00142 393 FAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYP------DSDIYWKKF---D 457 (815)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH------hCCCEEEEcccchhhhcc------ccCCccccc---c
Confidence 6667776663 45668999999999999996555443 489999999988522111 111111000 0
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-------h----ccCcccc------cccCCCCeEEEeCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-------G----GQGLHST------LNFHSKKFVGILNGIDTDAWN 767 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-------~----G~GL~~l------L~~~~eKI~gIpNGID~d~Wn 767 (812)
. .+.+..++..+..++..||.|||.|+..... + ++++.++ +.....|+.+|++|+|...|.
T Consensus 458 ~--~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~ 535 (815)
T PLN00142 458 D--KYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYF 535 (815)
T ss_pred h--hhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcC
Confidence 0 0001234556788999999999999766531 1 1111111 112245999999999999999
Q ss_pred CCCchh--hhhccCcCCccchHHhHHHHHHHhCCCCCCCCCCEEEEc
Q 003536 768 PATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVKFT 812 (812)
Q Consensus 768 P~tDk~--L~~~Ys~ddl~gK~~nK~aLqk~lGL~~~d~d~PLVGfI 812 (812)
|.++.. +..-+ +.++.+.-++...++.+|+.. +++.|+|++|
T Consensus 536 P~~~~~~rl~~l~--n~I~~~l~~~~~~~e~lg~l~-~~~kpvIl~V 579 (815)
T PLN00142 536 PYTEKQKRLTSLH--PSIEELLYSPEQNDEHIGYLK-DRKKPIIFSM 579 (815)
T ss_pred CCChHHhhHHhhc--ccchhhcCChHHHHHHhCCcc-CCCCcEEEEE
Confidence 976432 22111 234455567777788999863 5678998875
No 21
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.49 E-value=2e-13 Score=127.87 Aligned_cols=174 Identities=27% Similarity=0.345 Sum_probs=91.6
Q ss_pred EecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeE
Q 003536 517 IAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPV 596 (812)
Q Consensus 517 ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~V 596 (812)
|+..+.|. .||.+.++.+|+++|+++||+|+|+++..+...... .. ..
T Consensus 3 i~~~~~~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-------~~-----------------------~~ 50 (177)
T PF13439_consen 3 ITNIFLPN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE-------LV-----------------------KI 50 (177)
T ss_dssp EECC-TTS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-------EE-----------------------EE
T ss_pred EEEecCCC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-------cc-----------------------ce
Confidence 33445554 799999999999999999999999998865432110 00 00
Q ss_pred EEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEe
Q 003536 597 YFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTC 676 (812)
Q Consensus 597 YfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTI 676 (812)
. ... .+..+. ...+...+.....+.+++. +|||||+|.+.+..++... . .++|+|+|+
T Consensus 51 ~-~~~----~~~~~~-------~~~~~~~~~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~-~-------~~~~~v~~~ 108 (177)
T PF13439_consen 51 F-VKI----PYPIRK-------RFLRSFFFMRRLRRLIKKE--KPDIVHIHGPPAFWIALLA-C-------RKVPIVYTI 108 (177)
T ss_dssp ----T----T-SSTS-------S--HHHHHHHHHHHHHHHH--T-SEEECCTTHCCCHHHHH-H-------HCSCEEEEE
T ss_pred e-eee----eccccc-------ccchhHHHHHHHHHHHHHc--CCCeEEecccchhHHHHHh-c-------cCCCEEEEe
Confidence 0 000 000010 1122233445555666654 9999999998876652222 1 178999999
Q ss_pred cCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEE
Q 003536 677 HNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVG 756 (812)
Q Consensus 677 HNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~g 756 (812)
|+..+...+ +....-.... +. ..+.+.....+|.+++||+..+++ +.. ++.++.|+.+
T Consensus 109 H~~~~~~~~----~~~~~~~~~~------~~-------~~~~~~~~~~~~~ii~vS~~~~~~----l~~-~~~~~~ki~v 166 (177)
T PF13439_consen 109 HGPYFERRF----LKSKLSPYSY------LN-------FRIERKLYKKADRIIAVSESTKDE----LIK-FGIPPEKIHV 166 (177)
T ss_dssp -HHH--HHT----TTTSCCCHHH------HH-------HCTTHHHHCCSSEEEESSHHHHHH----HHH-HT--SS-EEE
T ss_pred CCCcccccc----cccccchhhh------hh-------hhhhhhHHhcCCEEEEECHHHHHH----HHH-hCCcccCCEE
Confidence 987632000 0000000000 00 011233467899999999999988 222 3346689999
Q ss_pred EeCCCCCCCC
Q 003536 757 ILNGIDTDAW 766 (812)
Q Consensus 757 IpNGID~d~W 766 (812)
||||||++.|
T Consensus 167 I~ngid~~~F 176 (177)
T PF13439_consen 167 IYNGIDTDRF 176 (177)
T ss_dssp ----B-CCCH
T ss_pred EECCccHHHc
Confidence 9999999876
No 22
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.48 E-value=1.1e-12 Score=139.26 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=119.3
Q ss_pred eEEEEecccCCccc-----CCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEE
Q 003536 513 HVIHIAAEMAPVAK-----VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 587 (812)
Q Consensus 513 KIL~ISsE~aP~aK-----vGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw 587 (812)
||+|++...+|... .||.+.++.+|+++|++.||+|+|+++........ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~---~---------------------- 55 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPP---I---------------------- 55 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCC---c----------------------
Confidence 46666665444432 58999999999999999999999998764321100 0
Q ss_pred EEeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCC
Q 003536 588 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (812)
Q Consensus 588 ~~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl 667 (812)
.....|+.++.+... +..+.....+++ ....|...+..+++....+|||||+|.|.+++++..+.+.
T Consensus 56 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~------ 122 (398)
T cd03800 56 VELAPGVRVVRVPAG-PAEYLPKEELWP------YLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR------ 122 (398)
T ss_pred cccccceEEEecccc-cccCCChhhcch------hHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh------
Confidence 001235555555421 111111111111 1123555566666654449999999999988874333332
Q ss_pred CCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccccc
Q 003536 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL 747 (812)
Q Consensus 668 ~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL 747 (812)
.++|+|+|+|+......... .. ...+. .......++..+..||.|+++|+...+.+ ....
T Consensus 123 ~~~~~i~~~h~~~~~~~~~~------~~-~~~~~---------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~----~~~~ 182 (398)
T cd03800 123 LGIPLVHTFHSLGAVKRRHL------GA-ADTYE---------PARRIEAEERLLRAADRVIASTPQEAEEL----YSLY 182 (398)
T ss_pred cCCceEEEeecccccCCccc------cc-ccccc---------hhhhhhHHHHHHhhCCEEEEcCHHHHHHH----HHHc
Confidence 47999999998743211100 00 00000 01122356778899999999999877651 1111
Q ss_pred ccCCCCeEEEeCCCCCCCCCCCCc
Q 003536 748 NFHSKKFVGILNGIDTDAWNPATD 771 (812)
Q Consensus 748 ~~~~eKI~gIpNGID~d~WnP~tD 771 (812)
.....++.+||||+|.+.|.|..+
T Consensus 183 ~~~~~~~~vi~ng~~~~~~~~~~~ 206 (398)
T cd03800 183 GAYPRRIRVVPPGVDLERFTPYGR 206 (398)
T ss_pred cccccccEEECCCCCccceecccc
Confidence 224457999999999998877543
No 23
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.48 E-value=2.4e-13 Score=125.28 Aligned_cols=160 Identities=23% Similarity=0.246 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCCC
Q 003536 528 GGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKF 607 (812)
Q Consensus 528 GGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~~ 607 (812)
||.+.++.+|+++|.+.||+|+|++|.+...... ....|++++.++...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999886543210 012456666554211
Q ss_pred CcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCCh
Q 003536 608 FWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPA 687 (812)
Q Consensus 608 F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~ 687 (812)
...... . .+ +.....+++.....+|||||+|+|.+++++.+.... .++|+|+|+|+..+....+.
T Consensus 50 --~~~~~~---~-~~---~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~~~~ 114 (160)
T PF13579_consen 50 --RPWPLR---L-LR---FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRR------RGIPLVVTVHGTLFRRGSRW 114 (160)
T ss_dssp --SSSGGG---H-CC---HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHH------HT--EEEE-SS-T------H
T ss_pred --cchhhh---h-HH---HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHc------cCCcEEEEECCCchhhccch
Confidence 000000 0 11 112233334334679999999999877774333212 37999999997543221100
Q ss_pred hhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCC
Q 003536 688 KELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNG 760 (812)
Q Consensus 688 ~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNG 760 (812)
. ... . ..+++..+..||.|+++|+..++. +.. ++.+.+++.+||||
T Consensus 115 ~--------~~~------------~--~~~~~~~~~~ad~vi~~S~~~~~~----l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 115 K--------RRL------------Y--RWLERRLLRRADRVIVVSEAMRRY----LRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp H--------HHH------------H--HHHHHHHHHH-SEEEESSHHHHHH----HHH-H---GGGEEE----
T ss_pred h--------hHH------------H--HHHHHHHHhcCCEEEECCHHHHHH----HHH-hCCCCCcEEEeCcC
Confidence 0 000 0 135678899999999999999987 112 22366899999998
No 24
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.47 E-value=1.1e-12 Score=147.04 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=109.8
Q ss_pred CCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEE
Q 003536 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 587 (812)
Q Consensus 508 ~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw 587 (812)
..++|||++++. ..|+...||.+.++.+|+++|.+.||+|+|+++..+.. . ...++.+
T Consensus 55 ~~~~mrI~~~~~-~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~----~~~g~~v---------------- 112 (465)
T PLN02871 55 RSRPRRIALFVE-PSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-Q----EFHGAKV---------------- 112 (465)
T ss_pred cCCCceEEEEEC-CcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-c----cccCcee----------------
Confidence 378899999974 44444689999999999999999999999999864321 0 0111111
Q ss_pred EEeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCC
Q 003536 588 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (812)
Q Consensus 588 ~~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl 667 (812)
.++..+.++ ++.. +.. .+ .+...+.+.+++ .+|||||+|+......+.+.+.. .
T Consensus 113 ----~~~~~~~~~------~~~~--~~~------~~-~~~~~l~~~i~~--~kpDiIh~~~~~~~~~~~~~~ak-----~ 166 (465)
T PLN02871 113 ----IGSWSFPCP------FYQK--VPL------SL-ALSPRIISEVAR--FKPDLIHASSPGIMVFGALFYAK-----L 166 (465)
T ss_pred ----eccCCcCCc------cCCC--cee------ec-cCCHHHHHHHHh--CCCCEEEECCCchhHHHHHHHHH-----H
Confidence 011111000 0100 000 00 011123344443 58999999986432222222222 1
Q ss_pred CCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhh-ccCcccc
Q 003536 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHST 746 (812)
Q Consensus 668 ~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~-G~GL~~l 746 (812)
.++|+|+|+|+.... ..+. .+. ..+ . .....+.+.....||.|+++|+..++.+ ..|.
T Consensus 167 ~~ip~V~~~h~~~~~-~~~~-----~~~--~~~-----~-----~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~--- 225 (465)
T PLN02871 167 LCVPLVMSYHTHVPV-YIPR-----YTF--SWL-----V-----KPMWDIIRFLHRAADLTLVTSPALGKELEAAGV--- 225 (465)
T ss_pred hCCCEEEEEecCchh-hhhc-----ccc--hhh-----H-----HHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCC---
Confidence 479999999975311 0000 000 000 0 0001234667788999999999988761 1111
Q ss_pred cccCCCCeEEEeCCCCCCCCCCCC
Q 003536 747 LNFHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 747 L~~~~eKI~gIpNGID~d~WnP~t 770 (812)
.+..++.+||||||.+.|.|..
T Consensus 226 --~~~~kv~vi~nGvd~~~f~p~~ 247 (465)
T PLN02871 226 --TAANRIRVWNKGVDSESFHPRF 247 (465)
T ss_pred --CCcCeEEEeCCccCccccCCcc
Confidence 2357899999999999998753
No 25
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.41 E-value=2.7e-12 Score=140.11 Aligned_cols=184 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+.-|.|. .||...++..|+++|.+.||+|+|+++.++..... . ....
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---~-----------------------~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI---R-----------------------YLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc---c-----------------------cccC
Confidence 799999988886 79999999999999999999999999875421100 0 0023
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHH-HHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLY-WDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~-lk~y~~~gl~~iP 671 (812)
|++++.++.. .+.+...+. ++..+.......+. ..+|||||+|++.++++.... +.. ..++|
T Consensus 53 ~i~v~~~p~~----~~~~~~~~~------~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~~~-----~~~~~ 115 (398)
T cd03796 53 GLKVYYLPFV----VFYNQSTLP------TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLHAR-----TMGLK 115 (398)
T ss_pred ceeEEEecce----eccCCcccc------chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHhh-----hcCCc
Confidence 5556655421 011111111 00111112223333 358999999998765542121 121 24799
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh--hccCccccccc
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE--GGQGLHSTLNF 749 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE--~G~GL~~lL~~ 749 (812)
+|+|.|+.. +..... .. +.. .+.+.....+|.+++||+...+. ...+ .
T Consensus 116 ~v~t~h~~~--~~~~~~----------~~----------~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~------~ 165 (398)
T cd03796 116 TVFTDHSLF--GFADAS----------SI----------HTN--KLLRFSLADVDHVICVSHTSKENTVLRAS------L 165 (398)
T ss_pred EEEEecccc--cccchh----------hH----------Hhh--HHHHHhhccCCEEEEecHhHhhHHHHHhC------C
Confidence 999999752 100000 00 001 13455678899999999987754 1111 2
Q ss_pred CCCCeEEEeCCCCCCCCCCCCc
Q 003536 750 HSKKFVGILNGIDTDAWNPATD 771 (812)
Q Consensus 750 ~~eKI~gIpNGID~d~WnP~tD 771 (812)
+..++.+||||+|.+.|.|..+
T Consensus 166 ~~~k~~vi~ngvd~~~f~~~~~ 187 (398)
T cd03796 166 DPERVSVIPNAVDSSDFTPDPS 187 (398)
T ss_pred ChhhEEEEcCccCHHHcCCCcc
Confidence 4578999999999988877543
No 26
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=1e-11 Score=131.25 Aligned_cols=184 Identities=23% Similarity=0.153 Sum_probs=108.2
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||++++ +|. .||.+.++.+|+++|.+.||+|+|++...+..... ..
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~---~~------------------------- 47 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE---YS------------------------- 47 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh---hc-------------------------
Confidence 7999997 354 69999999999999999999999998654211000 00
Q ss_pred CCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCc
Q 003536 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iP 671 (812)
.++.++.++.. .+....... ....+...+.++++ ..+|||||+|.+.....+.++...+.. ..++|
T Consensus 48 ~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~l~~~i~--~~~~divh~~~~~~~~~~~~~~~~~~~--~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYPLFQYPP------YDLALASKIAEVAK--RYKLDLLHVHYAVPHAVAAYLAREILG--KKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccchhhcch------hHHHHHHHHHHHHh--cCCccEEeecccCCccHHHHHHHHhcC--cCCCc
Confidence 11111111100 000000000 01122344445555 359999999987654442333322211 13799
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|+|+|+..+.- .+.. .....+.+.++..||.|+++|+..++... ..+ ...
T Consensus 114 ~i~~~h~~~~~~---------~~~~---------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~----~~~-~~~ 164 (371)
T cd04962 114 VVTTLHGTDITL---------VGQD---------------PSFQPATRFSIEKSDGVTAVSESLRQETY----ELF-DIT 164 (371)
T ss_pred EEEEEcCCcccc---------cccc---------------ccchHHHHHHHhhCCEEEEcCHHHHHHHH----Hhc-CCc
Confidence 999999764210 0000 00113567788999999999999877611 111 134
Q ss_pred CCeEEEeCCCCCCCCCCCCc
Q 003536 752 KKFVGILNGIDTDAWNPATD 771 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~tD 771 (812)
.++.+||||+|...+.|..+
T Consensus 165 ~~i~vi~n~~~~~~~~~~~~ 184 (371)
T cd04962 165 KEIEVIPNFVDEDRFRPKPD 184 (371)
T ss_pred CCEEEecCCcCHhhcCCCch
Confidence 68999999999887776543
No 27
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.30 E-value=1.7e-11 Score=136.31 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=108.9
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||+||..-. ..||.|.++.+|++.+.+.||+|.++.-........ ...
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~-----~~~---------------------- 49 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKES-----VSH---------------------- 49 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccc-----ccc----------------------
Confidence 8999999743 479999999999999999999999987653321110 000
Q ss_pred CCe-eEEEeCCCCC-------CCCCcCCCCCCCCchHHHHHHHHH-HHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHh
Q 003536 592 EGL-PVYFIEPHHP-------DKFFWRGQFYGEHDDFRRFSFFSR-AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLY 662 (812)
Q Consensus 592 ~GV-~VYfLd~~~p-------s~~F~R~~lYG~~Dd~~RfifFsr-AaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y 662 (812)
.++ .++.+.+... ..+|++. .|+++ ++.+++.+ ..+|||||+|.-|++++....+..|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNRD------------LFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcchh------------hcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 000 0111111000 0012221 22222 22334433 6799999999888876633222222
Q ss_pred c---cCCCCCCcEEEEecCC-ccCCCCChh----hh-hhcCCCcccccCCcccccCC---CCCchhHHHHHHHHcCcEEe
Q 003536 663 V---PKGLNSARVCFTCHNF-EYQGTAPAK----EL-ASCGLDVQQLNRPDRMQDNS---AHDRINPLKGAIVFSNIVTT 730 (812)
Q Consensus 663 ~---~~gl~~iPvVfTIHNl-eyqG~f~~~----~L-~~~GLp~e~f~~~D~led~~---~~~~vNllK~AI~~AD~VIT 730 (812)
. .....++|+|+|.|+. .+.|++... .| ..|+--+..-..|....+.. +..+-.........++.+|+
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~ 196 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFIS 196 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 0 0112468999999998 456655441 11 12332111100011010000 00011112223334689999
Q ss_pred cCcchhhhhccCcccccccCCCCeEEEeCCCCCCCC
Q 003536 731 VSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 731 VSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~W 766 (812)
+|.+.+++. ...+ ...++.+||||||++.+
T Consensus 197 ~S~~l~~~~----~~~~--~~~~i~vI~NGid~~~~ 226 (405)
T PRK10125 197 PSQHVADAF----NSLY--GPGRCRIINNGIDMATE 226 (405)
T ss_pred cCHHHHHHH----HHHc--CCCCEEEeCCCcCcccc
Confidence 999998872 1222 23689999999997543
No 28
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.27 E-value=2e-10 Score=120.26 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=99.6
Q ss_pred CcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCC
Q 003536 523 PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPH 602 (812)
Q Consensus 523 P~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~ 602 (812)
|....||.+.++.+|+++|.+.||+|+|+++...... .+. ..|++++.+...
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~-----~~~-----------------------~~~~~~~~~~~~ 56 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRLVA-----ELE-----------------------AEGSRHIKLPFI 56 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH-----HHH-----------------------hcCCeEEEcccc
Confidence 3335699999999999999999999999987532111 010 113333332210
Q ss_pred CCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccC
Q 003536 603 HPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQ 682 (812)
Q Consensus 603 ~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyq 682 (812)
.... .....+......++++ .+|||||+|.+..++.+.+..+ ..++|+|+|+|+....
T Consensus 57 -------~~~~-------~~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~ 114 (355)
T cd03819 57 -------SKNP-------LRILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSV 114 (355)
T ss_pred -------ccch-------hhhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhh
Confidence 0001 1111122233444543 5899999999877666333222 2479999999965311
Q ss_pred CCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCC
Q 003536 683 GTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGID 762 (812)
Q Consensus 683 G~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID 762 (812)
. .+.+..+..||.++++|+..++.+ ...++.+..++.+||||||
T Consensus 115 ~--------------------------------~~~~~~~~~~~~vi~~s~~~~~~~----~~~~~~~~~k~~~i~ngi~ 158 (355)
T cd03819 115 N--------------------------------FRYNAIMARGDRVIAVSNFIADHI----RENYGVDPDRIRVIPRGVD 158 (355)
T ss_pred H--------------------------------HHHHHHHHhcCEEEEeCHHHHHHH----HHhcCCChhhEEEecCCcc
Confidence 0 012335568999999999887761 1112335679999999999
Q ss_pred CCCCCCC
Q 003536 763 TDAWNPA 769 (812)
Q Consensus 763 ~d~WnP~ 769 (812)
...|.|.
T Consensus 159 ~~~~~~~ 165 (355)
T cd03819 159 LDRFDPG 165 (355)
T ss_pred ccccCcc
Confidence 9888764
No 29
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.26 E-value=1.2e-10 Score=121.01 Aligned_cols=165 Identities=20% Similarity=0.113 Sum_probs=103.2
Q ss_pred CeEEEEecccCC--cccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEE
Q 003536 512 LHVIHIAAEMAP--VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (812)
Q Consensus 512 MKIL~ISsE~aP--~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~ 589 (812)
|||++|+..+.| ....||.+.++..|+++|.+.||+|+|+++........ . ..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~------~~--------------- 55 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----L------VP--------------- 55 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----e------ee---------------
Confidence 899999998754 22479999999999999999999999999875432110 0 00
Q ss_pred eeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCC
Q 003536 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (812)
Q Consensus 590 ~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~ 669 (812)
... ..+... . .. .......+.....++++ ..+|||||+|+|.+.+. +.+ ..+
T Consensus 56 -~~~-~~~~~~------~------~~---~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~---~~~------~~~ 107 (335)
T cd03802 56 -VVP-EPLRLD------A------PG---RDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP---FAR------PLP 107 (335)
T ss_pred -ccC-CCcccc------c------ch---hhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh---hhc------ccC
Confidence 000 000000 0 00 00111112222333344 35899999999887654 111 257
Q ss_pred CcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccccccc
Q 003536 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF 749 (812)
Q Consensus 670 iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~ 749 (812)
+|+|+|+|+..+.... ........++.++++|+...+.. . .
T Consensus 108 ~~~v~~~h~~~~~~~~-------------------------------~~~~~~~~~~~~~~~s~~~~~~~-------~-~ 148 (335)
T cd03802 108 VPVVTTLHGPPDPELL-------------------------------KLYYAARPDVPFVSISDAQRRPW-------P-P 148 (335)
T ss_pred CCEEEEecCCCCcccc-------------------------------hHHHhhCcCCeEEEecHHHHhhc-------c-c
Confidence 8999999977432110 01234456788999999987751 1 1
Q ss_pred CCCCeEEEeCCCCCCCCCCC
Q 003536 750 HSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 750 ~~eKI~gIpNGID~d~WnP~ 769 (812)
. .++.+||||||++.|.|.
T Consensus 149 ~-~~~~vi~ngvd~~~~~~~ 167 (335)
T cd03802 149 L-PWVATVHNGIDLDDYPFR 167 (335)
T ss_pred c-cccEEecCCcChhhCCCC
Confidence 1 789999999999998864
No 30
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.22 E-value=3.4e-10 Score=118.14 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=101.7
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
+|+++++.+ ..||...++.+|+++|.+.||+|+|+++....... ... .
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~----~~~----------~-------------- 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK----PPI----------D-------------- 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc----chh----------h--------------
Confidence 588887654 47999999999999999999999999864322110 000 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
+..+..+.. .+. . ..+......+.++++ .++|||||+|.+++++++.+.+.. ..+.|+
T Consensus 49 ~~~~~~~~~-------~~~-~-------~~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLNM-------SKN-P-------LSFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEecc-------ccc-c-------hhhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 000001110 000 0 011111122334454 369999999999887764333222 247899
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhh-ccCcccccccCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHS 751 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~-G~GL~~lL~~~~ 751 (812)
|+|.|+....+... ..+.+....+++.++++|+...+.+ ..+ ..+.
T Consensus 107 v~~~h~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~ 153 (360)
T cd04951 107 ICTAHSKNEGGRLR----------------------------MLAYRLTDFLSDLTTNVSKEALDYFIASK-----AFNA 153 (360)
T ss_pred EEEeeccCchhHHH----------------------------HHHHHHHhhccCceEEEcHHHHHHHHhcc-----CCCc
Confidence 99999875332110 0112334456889999998877651 111 1245
Q ss_pred CCeEEEeCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~ 769 (812)
.++.+||||+|...|.|.
T Consensus 154 ~~~~~i~ng~~~~~~~~~ 171 (360)
T cd04951 154 NKSFVVYNGIDTDRFRKD 171 (360)
T ss_pred ccEEEEccccchhhcCcc
Confidence 789999999998877654
No 31
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.20 E-value=2.7e-10 Score=135.63 Aligned_cols=287 Identities=21% Similarity=0.245 Sum_probs=168.7
Q ss_pred CcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCccccc-----c--cc----cc-cc-------eeEEEeeecCCceee
Q 003536 523 PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYD-----R--ID----DL-RA-------LDVVVESYFDGRLFK 583 (812)
Q Consensus 523 P~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~-----~--i~----~L-~g-------v~V~V~s~fdG~~~~ 583 (812)
|-.-.||||..++.+.++++.+|.+.+.++-+|..---. + ++ .+ .+ -+..+.+.|.|+...
T Consensus 102 a~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~ 181 (797)
T cd04300 102 AGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVEH 181 (797)
T ss_pred CCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCCCceEecCCcEEEEEECCEEEE
Confidence 434579999999999999999999999998888651100 1 00 00 00 011223345554322
Q ss_pred eE-------EEEE-----------eeCC------eeEEEeCCCCCCC----CCcC-----------------CCCCCCCc
Q 003536 584 NK-------VWVS-----------TIEG------LPVYFIEPHHPDK----FFWR-----------------GQFYGEHD 618 (812)
Q Consensus 584 ~~-------Vw~~-----------~v~G------V~VYfLd~~~ps~----~F~R-----------------~~lYG~~D 618 (812)
.. +|.. .+.| +++.+.++..+.. .|.+ .-+|+. |
T Consensus 182 ~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~-D 260 (797)
T cd04300 182 YEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPN-D 260 (797)
T ss_pred eecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEeeCCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCC-C
Confidence 21 3431 1122 2233333221111 1211 257775 4
Q ss_pred -----hHHH---HHHHHHHHHHHH-HHc--------CC-CCCEEEEcCcccchHHHHHHHHhccC-CC--------CCCc
Q 003536 619 -----DFRR---FSFFSRAALELL-LQA--------GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-GL--------NSAR 671 (812)
Q Consensus 619 -----d~~R---fifFsrAaLelL-kkl--------g~-kPDIIH~HDWhTA~Vapl~lk~y~~~-gl--------~~iP 671 (812)
...| ..||+.|+++.| ++. +. ++.+||+||-|++++.+-+++.+.+. ++ ...-
T Consensus 261 s~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~~~~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~ 340 (797)
T cd04300 261 STEEGKELRLKQQYFFVSASLQDIIRRFKKTHGPLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKT 340 (797)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCChhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 3344 678999998875 433 22 78999999999999866656655431 21 3456
Q ss_pred EEEEecCCccCC--CCChhhhhhc-----------------------CCCcccccCCcccccCCCCCchhHHHHHHHHcC
Q 003536 672 VCFTCHNFEYQG--TAPAKELASC-----------------------GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSN 726 (812)
Q Consensus 672 vVfTIHNleyqG--~f~~~~L~~~-----------------------GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD 726 (812)
++||.|++.+.| .+|.+.+..+ +.+.+.+..+..+++ ...+.++|...|+..|.
T Consensus 341 ~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l~ii~~-~~~~~v~Ma~LAi~~S~ 419 (797)
T cd04300 341 FAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEE-GGEKQVRMAHLAIVGSH 419 (797)
T ss_pred eeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhccccc-CCCCEEehHHHHHhcCc
Confidence 999999998777 4565544311 122222211111121 11246899999999999
Q ss_pred cEEecCcchhhhhccC-cccccccCCCCeEEEeCCCCCCCCCCCCchhhhh---------------------ccCcC---
Q 003536 727 IVTTVSPSYAQEGGQG-LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKV---------------------QYNAN--- 781 (812)
Q Consensus 727 ~VITVSptyAeE~G~G-L~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~---------------------~Ys~d--- 781 (812)
.|++||..|.+-...- +.+.....+.|+.-|+|||++.+|--...+.|.. .|..+
T Consensus 420 ~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f 499 (797)
T cd04300 420 SVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAF 499 (797)
T ss_pred chhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHH
Confidence 9999999998751100 1112223468899999999999996222222111 12212
Q ss_pred --C-ccchHHhHHHHH----HHhCCCCCCCCCCEEEEc
Q 003536 782 --D-LQGKAENKESIR----KHLGLSSADARKPLVKFT 812 (812)
Q Consensus 782 --d-l~gK~~nK~aLq----k~lGL~~~d~d~PLVGfI 812 (812)
. ++-|..+|..|- +..|+. .||+...+|+|
T Consensus 500 ~~~l~~~K~~nK~~L~~~i~~~~g~~-ldp~slfdvq~ 536 (797)
T cd04300 500 LKEFRAIKQANKERLAAYIKKTTGVE-VDPDSLFDVQV 536 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc-cCCCccEEEEe
Confidence 1 356888998874 488998 68999888875
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.16 E-value=1.8e-10 Score=123.51 Aligned_cols=194 Identities=21% Similarity=0.230 Sum_probs=102.8
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||+++.+.+ ..||...++.+|+++|+++||+|+|+++.++.... ..... +|
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~--~~~~~----------~~------------ 52 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC--FEETK----------DG------------ 52 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc--chhcc----------CC------------
Confidence 8999997654 46999999999999999999999999986532110 00000 11
Q ss_pred CCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCc
Q 003536 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iP 671 (812)
++.++.+....+..+|.+...+ -...++.+. ..-.......+|||||+|++.++.. +... ..+.|
T Consensus 53 -~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~Dvi~~~~~~~~~~--~~~~------~~~~~ 117 (392)
T cd03805 53 -TLPVRVRGDWLPRSIFGRFHIL---CAYLRMLYL---ALYLLLLPDEKYDVFIVDQVSACVP--LLKL------FSPSK 117 (392)
T ss_pred -eeEEEEEeEEEcchhhHhHHHH---HHHHHHHHH---HHHHHhcccCCCCEEEEcCcchHHH--HHHH------hcCCc
Confidence 1222221100011111110000 000111111 1110012246899999998775432 2222 12489
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCC-chhHHHHHHHHcCcEEecCcchhhhhccCccccccc-
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD-RINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF- 749 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~-~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~- 749 (812)
+|+++|.+..........+. . + +.. .-.+++.+...||.|+++|+..++.+ ...+..
T Consensus 118 ~i~~~h~~~~~~~~~~~~~~-------~------~----~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~----~~~~~~~ 176 (392)
T cd03805 118 ILFYCHFPDQLLAQRGSLLK-------R------L----YRKPFDWLEEFTTGMADKIVVNSNFTASVF----KKTFPSL 176 (392)
T ss_pred EEEEEecChHHhcCCCcHHH-------H------H----HHHHHHHHHHHHhhCceEEEEcChhHHHHH----HHHhccc
Confidence 99999965321110000000 0 0 000 01245678889999999999887751 111111
Q ss_pred CCCCeEEEeCCCCCCCCCCC
Q 003536 750 HSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 750 ~~eKI~gIpNGID~d~WnP~ 769 (812)
...++.+|+||||.+.|.|.
T Consensus 177 ~~~~~~vi~n~vd~~~~~~~ 196 (392)
T cd03805 177 AKNPREVVYPCVDTDSFEST 196 (392)
T ss_pred ccCCcceeCCCcCHHHcCcc
Confidence 22345699999999888764
No 33
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.14 E-value=1.2e-09 Score=111.73 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=108.2
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..+.| ||.+.++..|+++|.+.|++|++++......... .+. ..
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~~-----------------------~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---ELE-----------------------EA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HHH-----------------------hc
Confidence 68999988754 9999999999999999999999998643221100 000 12
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
|++++.+.... . .. ...+.....++++ ..+||+||+|.+++.+.+.+. ... ..++|+
T Consensus 51 ~i~v~~~~~~~--------~-~~-------~~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~-~~~----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKRP--------G-RP-------DPGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLA-ARL----AGVPPV 107 (365)
T ss_pred CCeEEEEeccc--------c-cc-------cHHHHHHHHHHHH--hhCCCEEEeccccccHHHHHH-HHh----cCCCcE
Confidence 45555443210 0 00 0111223334454 358999999999877764333 221 147899
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhh-ccCcccccccCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHS 751 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~-G~GL~~lL~~~~ 751 (812)
|+|+|+..+... .. . . .....+.+.....+|.++++|+...+.+ ..| ...
T Consensus 108 i~~~~~~~~~~~-~~--~-----~---------------~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~------~~~ 158 (365)
T cd03807 108 IWGIRHSDLDLG-KK--S-----T---------------RLVARLRRLLSSFIPLIVANSAAAAEYHQAIG------YPP 158 (365)
T ss_pred EEEecCCccccc-ch--h-----H---------------hHHHHHHHHhccccCeEEeccHHHHHHHHHcC------CCh
Confidence 999998754311 00 0 0 0001233445567899999999887761 212 245
Q ss_pred CCeEEEeCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~ 769 (812)
.++.+|+||+|...|.|.
T Consensus 159 ~~~~vi~~~~~~~~~~~~ 176 (365)
T cd03807 159 KKIVVIPNGVDTERFSPD 176 (365)
T ss_pred hheeEeCCCcCHHhcCCc
Confidence 789999999998887764
No 34
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=1.1e-09 Score=114.64 Aligned_cols=178 Identities=19% Similarity=0.168 Sum_probs=100.7
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+++++|. ..||.+.++..|+++|++.||+|+|+++........ ....
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~---------------------------~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE---------------------------TEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc---------------------------cccC
Confidence 699998887665 479999999999999999999999999764321100 0124
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCc--ccchHHHHHHHHhccCCCCCC
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW--QTAFVAPLYWDLYVPKGLNSA 670 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDW--hTA~Vapl~lk~y~~~gl~~i 670 (812)
|++++.++.. +.... .++.+........++ ..+|++|+|.+ .++++. ..+. ..+.
T Consensus 53 ~i~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~------~~~~ 109 (363)
T cd04955 53 GVRLIHIPAP-------EIGGL------GTIIYDILAILHALF---VKRDIDHVHALGPAIAPFL-PLLR------LKGK 109 (363)
T ss_pred CceEEEcCCC-------Cccch------hhhHHHHHHHHHHHh---ccCCeEEEEecCccHHHHH-HHHH------hcCC
Confidence 6666665421 00000 011111111122222 24555555544 332221 1112 1378
Q ss_pred cEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccC
Q 003536 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFH 750 (812)
Q Consensus 671 PvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~ 750 (812)
|+|+|+|+..+.... + +.....+ ...+.+.++..||.|+++|+..++.+. ..++
T Consensus 110 ~~v~~~h~~~~~~~~----~---~~~~~~~-------------~~~~~~~~~~~ad~ii~~s~~~~~~~~----~~~~-- 163 (363)
T cd04955 110 KVVVNMDGLEWKRAK----W---GRPAKRY-------------LKFGEKLAVKFADRLIADSPGIKEYLK----EKYG-- 163 (363)
T ss_pred CEEEEccCcceeecc----c---ccchhHH-------------HHHHHHHHHhhccEEEeCCHHHHHHHH----HhcC--
Confidence 999999987543210 0 0000000 012346678899999999999887621 1111
Q ss_pred CCCeEEEeCCCCCCCCCC
Q 003536 751 SKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 751 ~eKI~gIpNGID~d~WnP 768 (812)
.+..+||||+|...+.|
T Consensus 164 -~~~~~i~ngv~~~~~~~ 180 (363)
T cd04955 164 -RDSTYIPYGADHVVSSE 180 (363)
T ss_pred -CCCeeeCCCcChhhcch
Confidence 12289999999877654
No 35
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.11 E-value=2.4e-09 Score=116.86 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=102.2
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
|||+|...|+ |- -..|+++|+++||+|+|+++.-..... .
T Consensus 1 ~il~~~~~~p-----~~----~~~la~~L~~~G~~v~~~~~~~~~~~~-------------------------------~ 40 (396)
T cd03818 1 RILFVHQNFP-----GQ----FRHLAPALAAQGHEVVFLTEPNAAPPP-------------------------------G 40 (396)
T ss_pred CEEEECCCCc-----hh----HHHHHHHHHHCCCEEEEEecCCCCCCC-------------------------------C
Confidence 5888876553 22 246999999999999999987542100 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHH---HHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCC
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL---LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelL---kklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~ 669 (812)
||+++.+.+... .....+++.+.+......+.++.+.+ ...+++|||||+|.+.+.. ++++.. +.+
T Consensus 41 ~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~---~~l~~~----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPRG----PTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGET---LFLKDV----WPD 109 (396)
T ss_pred CeeEEEecCCCC----CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchh---hhHHHh----CCC
Confidence 344444433211 01133443334443333333333333 3457899999999643221 223322 346
Q ss_pred CcEEEEecCCcc-CCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccc
Q 003536 670 ARVCFTCHNFEY-QGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (812)
Q Consensus 670 iPvVfTIHNley-qG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~ 748 (812)
+|+|.++|-... .|.- .+.++.......... ......-+...++..||.||++|+..++.+ ...
T Consensus 110 ~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~----~~~-- 174 (396)
T cd03818 110 APLIGYFEFYYRAEGAD-------VGFDPEFPPSLDDAL--RLRNRNALILLALAQADAGVSPTRWQRSTF----PAE-- 174 (396)
T ss_pred CCEEEEEeeeecCCCCC-------CCCCCCCCCchhHHH--HHHHhhhHhHHHHHhCCEEECCCHHHHhhC----cHh--
Confidence 888887764310 1100 011110000000000 000011124567899999999999887751 111
Q ss_pred cCCCCeEEEeCCCCCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~WnP~t 770 (812)
...++.+||||||++.|.|..
T Consensus 175 -~~~ki~vI~ngvd~~~f~~~~ 195 (396)
T cd03818 175 -LRSRISVIHDGIDTDRLRPDP 195 (396)
T ss_pred -hccceEEeCCCccccccCCCc
Confidence 237899999999999998754
No 36
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=99.10 E-value=5.9e-10 Score=132.35 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=120.5
Q ss_pred CCCCCCc----hHHH---HHHHHHHHHH-HHHH-------c-CC-CCCEEEEcCcccchHHHHHHHHhccC-CC------
Q 003536 612 QFYGEHD----DFRR---FSFFSRAALE-LLLQ-------A-GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-GL------ 667 (812)
Q Consensus 612 ~lYG~~D----d~~R---fifFsrAaLe-lLkk-------l-g~-kPDIIH~HDWhTA~Vapl~lk~y~~~-gl------ 667 (812)
-+|+... ...| ..||+.|++. .+++ + +. ++.+||+||-|++++.+-+++.+.+. |+
T Consensus 257 ~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw 336 (798)
T PRK14985 257 VLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAW 336 (798)
T ss_pred eecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 5676521 1444 6788888887 4421 1 22 78899999999999866666655432 21
Q ss_pred --CCCcEEEEecCCccCC--CCChhhhhhc---------CC------------C--cccccCCcccccCCCCCchhHHHH
Q 003536 668 --NSARVCFTCHNFEYQG--TAPAKELASC---------GL------------D--VQQLNRPDRMQDNSAHDRINPLKG 720 (812)
Q Consensus 668 --~~iPvVfTIHNleyqG--~f~~~~L~~~---------GL------------p--~e~f~~~D~led~~~~~~vNllK~ 720 (812)
.+.-++||.|++.+.| .||.+.+..+ .+ | .+.+.+..-+ ..+.++|...
T Consensus 337 ~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~d~~~~~~~sii----~~~~v~Ma~L 412 (798)
T PRK14985 337 AITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVV----HDKQVRMANL 412 (798)
T ss_pred HHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCcHHHhhhhhhc----cCCeeehHHH
Confidence 3456999999998877 4565543311 00 0 0000000001 1246899999
Q ss_pred HHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCCCCCC----CCCCchhhhh-----------------cc
Q 003536 721 AIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGIDTDAW----NPATDTFLKV-----------------QY 778 (812)
Q Consensus 721 AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID~d~W----nP~tDk~L~~-----------------~Y 778 (812)
|+..|..|++||..|.+- -..-+.++....+.++.-|+|||++.+| +|.-...+.. .|
T Consensus 413 Ai~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~ 492 (798)
T PRK14985 413 CVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKY 492 (798)
T ss_pred HHHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhcc
Confidence 999999999999999874 0000111122246889999999999999 4532222221 23
Q ss_pred CcC-C-----ccchHHhHHHHH----HHhCCCCCCCCCCEEEEc
Q 003536 779 NAN-D-----LQGKAENKESIR----KHLGLSSADARKPLVKFT 812 (812)
Q Consensus 779 s~d-d-----l~gK~~nK~aLq----k~lGL~~~d~d~PLVGfI 812 (812)
..+ . ++-|..+|..|- +..|+. .||+...+|++
T Consensus 493 ~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~-ldp~slfdvq~ 535 (798)
T PRK14985 493 ADDAAFRQQYREIKQANKVRLAEFVKQRTGIE-INPQAIFDVQI 535 (798)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCchhcchhhH
Confidence 221 2 456888888874 677988 58888766653
No 37
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.09 E-value=2.8e-09 Score=111.75 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=105.0
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++++..+ ..||...++..++++|.+.||+|+++++......... .+ ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~--~~-----------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDD--EI-----------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHH--HH-----------------------HHc
Confidence 689998865 3699999999999999999999999998754311100 00 012
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCc-
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR- 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iP- 671 (812)
|++++.+.+.. . ... .+.....++++ ..+|||||+|......++ .++... .+.|
T Consensus 52 ~~~~~~~~~~~-------~-------~~~---~~~~~~~~~~~--~~~~Dvv~~~~~~~~~~~-~~~~~~-----~~~~~ 106 (358)
T cd03812 52 GGKIYYIPARK-------K-------NPL---KYFKKLYKLIK--KNKYDIVHVHGSSASGFI-LLAAKK-----AGVKV 106 (358)
T ss_pred CCeEEEecCCC-------c-------cHH---HHHHHHHHHHh--cCCCCEEEEeCcchhHHH-HHHHhh-----CCCCe
Confidence 34444332110 0 011 11222333344 358999999998755542 222221 2444
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|++.|+..+.+..... . . .. ..+.+.....+|.++++|+..++. +... ...
T Consensus 107 ~v~~~~~~~~~~~~~~~----------~------~----~~--~~~~~~~~~~~~~~i~~s~~~~~~----~~~~--~~~ 158 (358)
T cd03812 107 RIAHSHNTSDSHDKKKK----------I------L----KY--KVLRKLINRLATDYLACSEEAGKW----LFGK--VKN 158 (358)
T ss_pred EEEEeccccccccccch----------h------h----HH--HHHHHHHHhcCCEEEEcCHHHHHH----HHhC--CCc
Confidence 57888876543221000 0 0 00 123556778899999999988765 1111 245
Q ss_pred CCeEEEeCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~ 769 (812)
.++.+||||||.+.|.|.
T Consensus 159 ~~~~vi~ngvd~~~~~~~ 176 (358)
T cd03812 159 KKFKVIPNGIDLEKFIFN 176 (358)
T ss_pred ccEEEEeccCcHHHcCCC
Confidence 789999999999887664
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.09 E-value=1.6e-09 Score=112.99 Aligned_cols=177 Identities=20% Similarity=0.194 Sum_probs=105.0
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..|.|. .||.+.++.+|+++|.+.||+|+|+++......... . ..
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~-------------------------~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE--E-------------------------RN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh--h-------------------------cc
Confidence 799999988885 699999999999999999999999987643211100 0 01
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
+++++.+.. ++.. ..+.. . . .++ ..++....+|||||+|.-..... ...+.. ..++|+
T Consensus 52 ~~~~~~~~~-----~~~~-~~~~~-~--~--~~~-----~~~~~~~~~~Dii~~~~~~~~~~-~~~~~~-----~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPS-----LLNV-ASTPF-S--P--SFF-----KQLKKLAKKADVIHLHFPNPLAD-LALLLL-----PRKKPV 109 (357)
T ss_pred CceEEEeec-----cccc-ccccc-c--H--HHH-----HHHHhcCCCCCEEEEecCcchHH-HHHHHh-----ccCceE
Confidence 222222211 0000 00000 0 0 111 11112357999999997433222 111111 147899
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~e 752 (812)
|+|+|+..+.... +. . .+ ..+.+..+..||.|+++|+.+.+.. .. +.....
T Consensus 110 i~~~h~~~~~~~~----~~-------~-----------~~--~~~~~~~~~~~d~vi~~s~~~~~~~----~~-~~~~~~ 160 (357)
T cd03795 110 VVHWHSDIVKQKL----LL-------K-----------LY--RPLQRRFLRRADAIVATSPNYAETS----PV-LRRFRD 160 (357)
T ss_pred EEEEcChhhccch----hh-------h-----------hh--hHHHHHHHHhcCEEEeCcHHHHHHH----HH-hcCCcc
Confidence 9999975432210 00 0 01 1356678899999999999988751 11 111237
Q ss_pred CeEEEeCCCCCCCCCCC
Q 003536 753 KFVGILNGIDTDAWNPA 769 (812)
Q Consensus 753 KI~gIpNGID~d~WnP~ 769 (812)
++.+||||+|.+.|.|.
T Consensus 161 ~~~~i~~gi~~~~~~~~ 177 (357)
T cd03795 161 KVRVIPLGLDPARYPRP 177 (357)
T ss_pred ceEEecCCCChhhcCCc
Confidence 89999999999888764
No 39
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.07 E-value=1.6e-09 Score=111.41 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=117.2
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..+.|. .||.+.++..++++|++.||+|+++++......... .. . .......
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~---~~----------~-------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKI---YK----------G-------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCcccccc---cc----------c-------ceEEecC
Confidence 699999988776 399999999999999999999999997754321100 00 0 0011235
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCccc-chHHHHHHHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhT-A~Vapl~lk~y~~~gl~~iP 671 (812)
|++++.+.... +.....++ ...++..|.......+.....+||+||+|.|.. ...+...... ..++|
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLPP----YKKNGLLK---RLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAP 126 (394)
T ss_pred CeEEEEEecCC----CCccchHH---HHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCC
Confidence 66666554211 11111111 111222333444444432357999999998432 2221222222 24799
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|+++|+..+... . ..+...... .. ......+++..+..+|.|+++|+.+++.+. ......
T Consensus 127 ~i~~~h~~~~~~~-----~-~~~~~~~~~-----~~---~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~ 187 (394)
T cd03794 127 FVLEVRDLWPESA-----V-ALGLLKNGS-----LL---YRLLRKLERLIYRRADAIVVISPGMREYLV-----RRGVPP 187 (394)
T ss_pred EEEEehhhcchhH-----H-HccCccccc-----hH---HHHHHHHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCc
Confidence 9999998632210 0 000000000 00 000113456788899999999999988621 012355
Q ss_pred CCeEEEeCCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~t 770 (812)
.++.+||||+|...+.|..
T Consensus 188 ~~~~~i~~~~~~~~~~~~~ 206 (394)
T cd03794 188 EKISVIPNGVDLELFKPPP 206 (394)
T ss_pred CceEEcCCCCCHHHcCCcc
Confidence 7899999999988777654
No 40
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.06 E-value=2e-09 Score=112.68 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=97.6
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
|||++++.. + ..||.+.++..++++|.+.||+|+|+++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999763 3 25999999999999999999999999754210
Q ss_pred CCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCc
Q 003536 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iP 671 (812)
+. +.++ ..+|||||+|.++.++++...+..+. .++|
T Consensus 43 -------~~-------------------------------~~~~--~~~~diih~~~~~~~~~~~~~~~~~~----~~~~ 78 (365)
T cd03825 43 -------LI-------------------------------SKIE--IINADIVHLHWIHGGFLSIEDLSKLL----DRKP 78 (365)
T ss_pred -------hh-------------------------------hChh--cccCCEEEEEccccCccCHHHHHHHH----cCCC
Confidence 00 0011 25899999998887776444344321 3799
Q ss_pred EEEEecCCccCC---CCCh--hhh-hhcCCCcccccCCcccccCCCCCc-hhHHHHHH-HHcCcEEecCcchhhhhccCc
Q 003536 672 VCFTCHNFEYQG---TAPA--KEL-ASCGLDVQQLNRPDRMQDNSAHDR-INPLKGAI-VFSNIVTTVSPSYAQEGGQGL 743 (812)
Q Consensus 672 vVfTIHNleyqG---~f~~--~~L-~~~GLp~e~f~~~D~led~~~~~~-vNllK~AI-~~AD~VITVSptyAeE~G~GL 743 (812)
+|+|+|+..+.. .++. ..+ ..|+..... ...... . .... ....+..+ ..++.++++|+..++..
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~---- 150 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQL-GSYPEK-D--LSRWIWRRKRKAWADLNLTIVAPSRWLADCA---- 150 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCCCCC-CCCCcc-c--HHHHHHHHHHHHhccCCcEEEehhHHHHHHH----
Confidence 999999863211 0100 000 111110000 000000 0 0000 01111122 35678888888776651
Q ss_pred ccccccCCCCeEEEeCCCCCCCCCCCC
Q 003536 744 HSTLNFHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 744 ~~lL~~~~eKI~gIpNGID~d~WnP~t 770 (812)
......+..++.+||||||++.|.|..
T Consensus 151 ~~~~~~~~~~~~vi~ngi~~~~~~~~~ 177 (365)
T cd03825 151 RSSSLFKGIPIEVIPNGIDTTIFRPRD 177 (365)
T ss_pred HhccccCCCceEEeCCCCcccccCCCc
Confidence 111123457999999999999887753
No 41
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.06 E-value=5.1e-09 Score=107.51 Aligned_cols=187 Identities=21% Similarity=0.197 Sum_probs=103.1
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..++|. .||.+.++..|+++|++.||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~-------------------------~ 51 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV--AL-------------------------N 51 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh--hc-------------------------c
Confidence 699999988764 799999999999999999999999997754321100 00 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcC-cccchHHHHHHHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HD-WhTA~Vapl~lk~y~~~gl~~iP 671 (812)
+++....... ...... .....+.......+.....+|||||+|+ |.........+.. ..++|
T Consensus 52 ~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~-----~~~~~ 114 (375)
T cd03821 52 GVPVKLFSIN--VAYGLN----------LARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAAR-----KYGIP 114 (375)
T ss_pred Cceeeecccc--hhhhhh----------hhhhccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHH-----HhCCC
Confidence 0000000000 000000 0000111111122233356899999998 4432221121111 14799
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|+++|+.......+...+. .. .......+..+..++.++++|......... ....
T Consensus 115 ~i~~~~~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~------~~~~ 170 (375)
T cd03821 115 YVVSPHGMLDPWALPHKALK-------------KR-----LAWFLFERRLLQAAAAVHATSEQEAAEIRR------LGLK 170 (375)
T ss_pred EEEEccccccccccccchhh-------------hH-----HHHHHHHHHHHhcCCEEEECCHHHHHHHHh------hCCc
Confidence 99999976422111000000 00 001123456777899999998766554110 1245
Q ss_pred CCeEEEeCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~ 769 (812)
.++.+||||+|.+.|.|.
T Consensus 171 ~~~~vi~~~~~~~~~~~~ 188 (375)
T cd03821 171 APIAVIPNGVDIPPFAAL 188 (375)
T ss_pred ccEEEcCCCcChhccCcc
Confidence 789999999999988765
No 42
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.06 E-value=2.8e-09 Score=109.67 Aligned_cols=185 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++++..++|. .||.+..+..++++|.+.||+|+|+++.+....... .. .
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~-------------------------~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE--EV-------------------------V 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc--cc-------------------------c
Confidence 699999988886 799999999999999999999999998875432110 00 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcc-cchHHHHHHHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWh-TA~Vapl~lk~y~~~gl~~iP 671 (812)
++..+.+.. ....+.... +. +.......++ ..+|||||+|... .++++..+.+. .++|
T Consensus 52 ~~~~~~~~~----~~~~~~~~~--------~~-~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~~------~~~~ 110 (374)
T cd03817 52 VVRPFRVPT----FKYPDFRLP--------LP-IPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVARK------LGIP 110 (374)
T ss_pred ccccccccc----chhhhhhcc--------cc-HHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHHH------cCCC
Confidence 000000000 000000000 01 1122222233 4699999999743 23332222222 4799
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCch-hHHHHHHHHcCcEEecCcchhhhh-ccCccccccc
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNF 749 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~v-NllK~AI~~AD~VITVSptyAeE~-G~GL~~lL~~ 749 (812)
+|+|+|.... .+ ........ . .. ..... .+.+..+..||.++++|+..++.+ ..+
T Consensus 111 ~i~~~~~~~~--~~----~~~~~~~~-~------~~---~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~------- 167 (374)
T cd03817 111 VVATYHTMYE--DY----THYVPLGR-L------LA---RAVVRRKLSRRFYNRCDAVIAPSEKIADLLREYG------- 167 (374)
T ss_pred EEEEecCCHH--HH----HHHHhccc-c------hh---HHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhcC-------
Confidence 9999997632 00 00000000 0 00 00011 356778889999999999877651 111
Q ss_pred CCCCeEEEeCCCCCCCCCCCC
Q 003536 750 HSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 750 ~~eKI~gIpNGID~d~WnP~t 770 (812)
...++.+||||+|...+.|..
T Consensus 168 ~~~~~~vi~~~~~~~~~~~~~ 188 (374)
T cd03817 168 VKRPIEVIPTGIDLDRFEPVD 188 (374)
T ss_pred CCCceEEcCCccchhccCccc
Confidence 234699999999998887643
No 43
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=99.05 E-value=7.2e-10 Score=131.72 Aligned_cols=198 Identities=21% Similarity=0.267 Sum_probs=122.1
Q ss_pred CCCCCCc-----hHHH---HHHHHHHHHHHH-HHc--------CC-CCCEEEEcCcccchHHHHHHHHhccC-CC-----
Q 003536 612 QFYGEHD-----DFRR---FSFFSRAALELL-LQA--------GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-GL----- 667 (812)
Q Consensus 612 ~lYG~~D-----d~~R---fifFsrAaLelL-kkl--------g~-kPDIIH~HDWhTA~Vapl~lk~y~~~-gl----- 667 (812)
-+|+. | ...| ..||+.|+++.| ++. +. ++.+||+||-|++++.+-+++.+.+. |+
T Consensus 252 vLYp~-D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~A 330 (794)
T TIGR02093 252 VLYPN-DSTYEGKELRLKQQYFFVSASLQDIIRRHLETHPDLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEA 330 (794)
T ss_pred CCcCC-CCccchHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHH
Confidence 56765 3 3445 678998888754 322 22 78899999999999966666655432 21
Q ss_pred ---CCCcEEEEecCCccCC--CCChhhhhh---------cCCCccccc-----CCc---------ccccCCCCCchhHHH
Q 003536 668 ---NSARVCFTCHNFEYQG--TAPAKELAS---------CGLDVQQLN-----RPD---------RMQDNSAHDRINPLK 719 (812)
Q Consensus 668 ---~~iPvVfTIHNleyqG--~f~~~~L~~---------~GLp~e~f~-----~~D---------~led~~~~~~vNllK 719 (812)
.+.-++||.|++.+.| .||.+.+.. .+++...+. .|. -++. .....++|..
T Consensus 331 w~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii~~-~~~~~v~Ma~ 409 (794)
T TIGR02093 331 WDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEE-GQSKRVRMAN 409 (794)
T ss_pred HHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeeeec-CCCCEEehHH
Confidence 3456999999998777 456554431 122221110 010 0110 0122689999
Q ss_pred HHHHHcCcEEecCcchhhhhcc-CcccccccCCCCeEEEeCCCCCCCCCCCCchhhh---hc------------------
Q 003536 720 GAIVFSNIVTTVSPSYAQEGGQ-GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLK---VQ------------------ 777 (812)
Q Consensus 720 ~AI~~AD~VITVSptyAeE~G~-GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~---~~------------------ 777 (812)
.|+..|..|++||..|.+-... -+.......++++.-|+|||++.+|--...+.|. ..
T Consensus 410 LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~ 489 (794)
T TIGR02093 410 LAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEP 489 (794)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHh
Confidence 9999999999999999865110 0011112346889999999999999632222222 11
Q ss_pred cCcC-----C-ccchHHhHHHHH----HHhCCCCCCCCCCEEEEc
Q 003536 778 YNAN-----D-LQGKAENKESIR----KHLGLSSADARKPLVKFT 812 (812)
Q Consensus 778 Ys~d-----d-l~gK~~nK~aLq----k~lGL~~~d~d~PLVGfI 812 (812)
|..+ . ++-|..+|..|- +..|+. .||+....++|
T Consensus 490 ~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~-ldp~slfdvq~ 533 (794)
T TIGR02093 490 YADDSEFLEEFRQVKQANKQRLAAYIKEHTGVE-VDPNSIFDVQV 533 (794)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cCccccchhhh
Confidence 2111 1 346888888874 477988 58888766654
No 44
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.03 E-value=3.7e-09 Score=114.14 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=34.3
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
||+||+.-+ ..||...++..|.++|.+.||+|++++|.-
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 689998754 369999999999999999999999998753
No 45
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.03 E-value=1.3e-09 Score=129.95 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHH-----------HHcCCCCCEEEEcCcccchHHHHHHHHhccC-CC--------CCCcEEEEecCCccC
Q 003536 623 FSFFSRAALELL-----------LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPK-GL--------NSARVCFTCHNFEYQ 682 (812)
Q Consensus 623 fifFsrAaLelL-----------kklg~kPDIIH~HDWhTA~Vapl~lk~y~~~-gl--------~~iPvVfTIHNleyq 682 (812)
..||+.++++.| +.++ .+-+||+||-|++++.+-+++.+.+. |+ .+.-++||.|++.+.
T Consensus 286 Eyfl~~agv~di~r~~~~~~~~l~~l~-~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpe 364 (815)
T PRK14986 286 EYFLVSATVQDILSRHYQLHKTYDNLA-DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSE 364 (815)
T ss_pred HHHhhhHHHHHHHHHHHHhCCCHhhCC-cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChH
Confidence 578999998855 2222 45599999999999966656655432 21 345699999999887
Q ss_pred C--CCChhhhhhc-----CCC----cccc--------------cCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhh
Q 003536 683 G--TAPAKELASC-----GLD----VQQL--------------NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQ 737 (812)
Q Consensus 683 G--~f~~~~L~~~-----GLp----~e~f--------------~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAe 737 (812)
| .||.+.+..+ ++. ...+ .+..-+++ .....++|...|++.|..|++||..|.+
T Consensus 365 alE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~~~~~~~~~~~~~sii~~-~~~~~v~Ma~LAl~~S~~vNGVS~lH~e 443 (815)
T PRK14986 365 ALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDE-SNGRRVRMAWLAVVVSHKVNGVSELHSN 443 (815)
T ss_pred HhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHHhCCCcHHHHhhhhcccc-CCCCEEeeHHHHhhccchhhHHHHHHHH
Confidence 7 4565544321 110 0000 00000011 0123689999999999999999999986
Q ss_pred hhccCc-ccccccCCCCeEEEeCCCCCCCCC----CCCchhhhhc-----------------cC-cCC-----ccchHHh
Q 003536 738 EGGQGL-HSTLNFHSKKFVGILNGIDTDAWN----PATDTFLKVQ-----------------YN-AND-----LQGKAEN 789 (812)
Q Consensus 738 E~G~GL-~~lL~~~~eKI~gIpNGID~d~Wn----P~tDk~L~~~-----------------Ys-~dd-----l~gK~~n 789 (812)
.....+ .+.....++|+.-|+|||++.+|- |.-...+... |. ..+ |+-|..+
T Consensus 444 vl~~~~f~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~n 523 (815)
T PRK14986 444 LMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLEN 523 (815)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 510000 111113467888999999999997 4321222111 11 112 3458888
Q ss_pred HHHHHH----HhCCCCCCCCCCEEEEc
Q 003536 790 KESIRK----HLGLSSADARKPLVKFT 812 (812)
Q Consensus 790 K~aLqk----~lGL~~~d~d~PLVGfI 812 (812)
|..|-+ ..|+. .||+...+|++
T Consensus 524 K~~L~~~i~~~~g~~-ldp~sLfd~qa 549 (815)
T PRK14986 524 KKRLAEYIAQQLNVV-VNPKALFDVQI 549 (815)
T ss_pred HHHHHHHHHHHhCCc-cCcccceeeee
Confidence 888744 77998 58998888875
No 46
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.01 E-value=1.4e-08 Score=109.16 Aligned_cols=166 Identities=16% Similarity=0.038 Sum_probs=98.4
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEe
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
+|||++++.+ .||--.++.+|+++|.+.||+|+|+++.++.. .. .+ .
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~---~~-----------------------~ 47 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGME-AR---LV-----------------------P 47 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchh-hh---cc-----------------------c
Confidence 4899888754 36666677799999999999999998754211 00 00 0
Q ss_pred eCCeeEEEeCCCCCCCCCcCCCCCCCCc-----hHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccC
Q 003536 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHD-----DFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPK 665 (812)
Q Consensus 591 v~GV~VYfLd~~~ps~~F~R~~lYG~~D-----d~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~ 665 (812)
..|++++.++.. .+++... ....+......+.++++ ..+|||||+|.|.+++.+.+. ..
T Consensus 48 ~~g~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~ik--~~~pDvv~~~~~~~~~~~~~~-~~---- 111 (357)
T PRK00726 48 KAGIEFHFIPSG---------GLRRKGSLANLKAPFKLLKGVLQARKILK--RFKPDVVVGFGGYVSGPGGLA-AR---- 111 (357)
T ss_pred cCCCcEEEEecc---------CcCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCcchhHHHHH-HH----
Confidence 135566655421 1111100 01111111122233344 348999999999887764332 22
Q ss_pred CCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccc
Q 003536 666 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHS 745 (812)
Q Consensus 666 gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~ 745 (812)
..++|+|++.|+..+ +. ..+.....+|.++++++....
T Consensus 112 -~~~~p~v~~~~~~~~-------------------------------~~--~~r~~~~~~d~ii~~~~~~~~-------- 149 (357)
T PRK00726 112 -LLGIPLVIHEQNAVP-------------------------------GL--ANKLLARFAKKVATAFPGAFP-------- 149 (357)
T ss_pred -HcCCCEEEEcCCCCc-------------------------------cH--HHHHHHHHhchheECchhhhh--------
Confidence 247899988774210 00 123355678999988873211
Q ss_pred ccccCCCCeEEEeCCCCCCCCCCC
Q 003536 746 TLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 746 lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
..+..++++|+||||.+.|.|.
T Consensus 150 --~~~~~~i~vi~n~v~~~~~~~~ 171 (357)
T PRK00726 150 --EFFKPKAVVTGNPVREEILALA 171 (357)
T ss_pred --ccCCCCEEEECCCCChHhhccc
Confidence 1356899999999998877653
No 47
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.99 E-value=1.7e-08 Score=102.04 Aligned_cols=184 Identities=22% Similarity=0.306 Sum_probs=111.1
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..+.|. .||.+.++..|+++|.+.||+|+++++......... .. .
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~--~~-----------~-------------- 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE--EV-----------G-------------- 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee--ee-----------c--------------
Confidence 699999988776 799999999999999999999999998765322100 00 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
....+.... ....+. ......+......++. ..+||+||+|+|....... .+.. ..++|+
T Consensus 52 ~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~-~~~~-----~~~~~~ 111 (374)
T cd03801 52 GIVVVRPPP--------LLRVRR----LLLLLLLALRLRRLLR--RERFDVVHAHDWLALLAAA-LAAR-----LLGIPL 111 (374)
T ss_pred CcceecCCc--------ccccch----hHHHHHHHHHHHHHhh--hcCCcEEEEechhHHHHHH-HHHH-----hcCCcE
Confidence 000000000 000000 0111122223333343 3589999999998777632 2221 258999
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~e 752 (812)
|+++|+..+........+. ......+.+..+..+|.++++|+..++.+ .........
T Consensus 112 i~~~h~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~d~~i~~s~~~~~~~----~~~~~~~~~ 168 (374)
T cd03801 112 VLTVHGLEFGRPGNELGLL-------------------LKLARALERRALRRADRIIAVSEATREEL----RELGGVPPE 168 (374)
T ss_pred EEEeccchhhccccchhHH-------------------HHHHHHHHHHHHHhCCEEEEecHHHHHHH----HhcCCCCCC
Confidence 9999988643321100000 00011345678889999999999888761 111222346
Q ss_pred CeEEEeCCCCCCCCCC
Q 003536 753 KFVGILNGIDTDAWNP 768 (812)
Q Consensus 753 KI~gIpNGID~d~WnP 768 (812)
++.+||||+|...|.|
T Consensus 169 ~~~~i~~~~~~~~~~~ 184 (374)
T cd03801 169 KITVIPNGVDTERFRP 184 (374)
T ss_pred cEEEecCcccccccCc
Confidence 8999999999998865
No 48
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.95 E-value=1.4e-08 Score=108.85 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEe
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
+.+|+||..-. ..||...++..|+++|.+.|++++|++..... ... ..+ .
T Consensus 1 ~~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~--~~~-----------------------~ 50 (374)
T TIGR03088 1 RPLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFR--KRI-----------------------Q 50 (374)
T ss_pred CceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhH--HHH-----------------------H
Confidence 35899998754 36999999999999999999999888632211 100 000 0
Q ss_pred eCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCC
Q 003536 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (812)
Q Consensus 591 v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~i 670 (812)
..|+.++.+... .. . + + .+.....+++++ .+|||||+|..++.+. .+.... .++
T Consensus 51 ~~~i~~~~~~~~------~~-~------~---~-~~~~~l~~~l~~--~~~Divh~~~~~~~~~-~~~~~~------~~~ 104 (374)
T TIGR03088 51 RPDVAFYALHKQ------PG-K------D---V-AVYPQLYRLLRQ--LRPDIVHTRNLAALEA-QLPAAL------AGV 104 (374)
T ss_pred hcCceEEEeCCC------CC-C------C---h-HHHHHHHHHHHH--hCCCEEEEcchhHHHH-HHHHHh------cCC
Confidence 124455544310 00 0 0 1 112334445554 5899999997654332 222121 245
Q ss_pred c-EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchh-HHHHHHHHcCcEEecCcchhhhhccCcccccc
Q 003536 671 R-VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN-PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (812)
Q Consensus 671 P-vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vN-llK~AI~~AD~VITVSptyAeE~G~GL~~lL~ 748 (812)
| +++|.|+..+.. .. + .. + ... +.+.....+|.+++||+..++.+ ...+.
T Consensus 105 ~~~i~~~h~~~~~~---~~-----~---~~------~-------~~~~~~~~~~~~~~~~i~vs~~~~~~~----~~~~~ 156 (374)
T TIGR03088 105 PARIHGEHGRDVFD---LD-----G---SN------W-------KYRWLRRLYRPLIHHYVAVSRDLEDWL----RGPVK 156 (374)
T ss_pred CeEEEeecCccccc---ch-----h---hH------H-------HHHHHHHHHHhcCCeEEEeCHHHHHHH----HHhcC
Confidence 5 355555432110 00 0 00 0 011 23345567899999999877651 11122
Q ss_pred cCCCCeEEEeCCCCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~WnP~ 769 (812)
.+..++.+|+||||.+.|.|.
T Consensus 157 ~~~~~~~vi~ngvd~~~~~~~ 177 (374)
T TIGR03088 157 VPPAKIHQIYNGVDTERFHPS 177 (374)
T ss_pred CChhhEEEeccCccccccCCC
Confidence 355789999999999988875
No 49
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.94 E-value=1.5e-08 Score=111.28 Aligned_cols=172 Identities=10% Similarity=0.055 Sum_probs=101.4
Q ss_pred eEEEEecccC--CcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEe
Q 003536 513 HVIHIAAEMA--PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 513 KIL~ISsE~a--P~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
||+|+++|-. |.+..||...++.++++.|+. +|+|++-....++.... .
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~--------------------------~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTK--------------------------V 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhh--------------------------c
Confidence 8999999964 334689999999999999953 99999877664332100 0
Q ss_pred eCCeeEEEeCCCC-CCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHc-CCCCCEEEEcCcccchHHHHHHHHhccCCCC
Q 003536 591 IEGLPVYFIEPHH-PDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (812)
Q Consensus 591 v~GV~VYfLd~~~-ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkkl-g~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~ 668 (812)
.+|+.++.+.... ....|++. +. .+...|+...+.++... +..+||||+|+-. .+. ..+... +.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~-~~~-~~~~~~-----~~ 120 (380)
T PRK15484 55 NDNCDIHYIGFSRIYKRLFQKW--TR-----LDPLPYSQRILNIAHKFTITKDSVIVIHNSM-KLY-RQIRER-----AP 120 (380)
T ss_pred cCCCceEEEEeccccchhhhhh--hc-----cCchhHHHHHHHHHHhcCCCCCcEEEEeCcH-HhH-HHHHhh-----CC
Confidence 1334444442100 00011110 00 01123444444545443 4579999999833 222 122221 35
Q ss_pred CCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccc
Q 003536 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (812)
Q Consensus 669 ~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~ 748 (812)
++|+|+|+|+. +. .. .+..+++|+++|+..++.+..+
T Consensus 121 ~~~~v~~~h~~-~~----~~--------------------------------~~~~~~~ii~~S~~~~~~~~~~------ 157 (380)
T PRK15484 121 QAKLVMHMHNA-FE----PE--------------------------------LLDKNAKIIVPSQFLKKFYEER------ 157 (380)
T ss_pred CCCEEEEEecc-cC----hh--------------------------------HhccCCEEEEcCHHHHHHHHhh------
Confidence 78999999975 11 00 1123689999999877652211
Q ss_pred cCCCCeEEEeCCCCCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~WnP~t 770 (812)
.+..++.+||||||.+.|.|..
T Consensus 158 ~~~~~i~vIpngvd~~~~~~~~ 179 (380)
T PRK15484 158 LPNADISIVPNGFCLETYQSNP 179 (380)
T ss_pred CCCCCEEEecCCCCHHHcCCcc
Confidence 1346799999999998887753
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.93 E-value=1.4e-08 Score=105.32 Aligned_cols=182 Identities=18% Similarity=0.107 Sum_probs=107.8
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++++..+.|. ..||.+.++.+|+++|++.||.|+++++............ .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------~-------------- 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLR------------A-------------- 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccch------------h--------------
Confidence 688888877774 4799999999999999999999999998765432110000 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
.... +.. .... ... .++..+.......+. ..+|||||+|.+...+. . ..++|+
T Consensus 54 ~~~~--~~~-----~~~~-~~~------~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~-----~------~~~~~~ 106 (365)
T cd03809 54 ALRL--LLR-----LPRR-LLW------GLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL-----R------LRGVPV 106 (365)
T ss_pred cccc--ccc-----cccc-ccc------chhhHHHHHHHHHhh--hcCCCeeeecccccCcc-----c------CCCCCE
Confidence 0000 000 0000 000 000111111111222 26899999999875553 1 258999
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~e 752 (812)
|+++|+..+...... ..... . .....+.+..+..+|.++++|+..++. +......+..
T Consensus 107 i~~~hd~~~~~~~~~-------~~~~~------~-----~~~~~~~~~~~~~~d~~i~~s~~~~~~----~~~~~~~~~~ 164 (365)
T cd03809 107 VVTIHDLIPLRFPEY-------FSPGF------R-----RYFRRLLRRALRRADAIITVSEATKRD----LLRYLGVPPD 164 (365)
T ss_pred EEEeccchhhhCccc-------CCHHH------H-----HHHHHHHHHHHHHcCEEEEccHHHHHH----HHHHhCcCHH
Confidence 999998743221000 00000 0 001135677889999999999998876 1111222457
Q ss_pred CeEEEeCCCCCCCCCCCC
Q 003536 753 KFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 753 KI~gIpNGID~d~WnP~t 770 (812)
++.+||||+|...+.+..
T Consensus 165 ~~~vi~~~~~~~~~~~~~ 182 (365)
T cd03809 165 KIVVIPLGVDPRFRPPPA 182 (365)
T ss_pred HEEeeccccCccccCCCc
Confidence 899999999998887754
No 51
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.89 E-value=2.9e-08 Score=103.55 Aligned_cols=171 Identities=17% Similarity=0.078 Sum_probs=102.9
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||+|++..++| |...++..+.++|.+.||+|+|+++........ .. .. ...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~-----~~------------~~-------~~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLV-----HP------------ED-------RAE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCcccccc-----cc------------cc-------ccc
Confidence 69999987643 356889999999999999999999775432110 00 00 000
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
+..+. +. ........+.......++ ..+|||||+|.+........+... ..++|+
T Consensus 52 ~~~~~---------~~---------~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LARTR---------YL---------ARSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccchH---------HH---------HHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 00000 00 001111222222333333 358999999987654432333332 237899
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~e 752 (812)
++|+|+...... .. ..+.+..+..||.++++|+..++.+ ...+.....
T Consensus 107 ~~~~~~~~~~~~---------------------------~~-~~~~~~~~~~~~~vi~~s~~~~~~l----~~~~~~~~~ 154 (355)
T cd03799 107 SFTAHGKDIFRS---------------------------PD-AIDLDEKLARADFVVAISEYNRQQL----IRLLGCDPD 154 (355)
T ss_pred EEEEeccccccc---------------------------Cc-hHHHHHHHhhCCEEEECCHHHHHHH----HHhcCCCcc
Confidence 999997542110 00 0245677889999999999998871 111123567
Q ss_pred CeEEEeCCCCCCCCCCC
Q 003536 753 KFVGILNGIDTDAWNPA 769 (812)
Q Consensus 753 KI~gIpNGID~d~WnP~ 769 (812)
++.+||||+|.+.|.|.
T Consensus 155 ~~~vi~~~~d~~~~~~~ 171 (355)
T cd03799 155 KIHVVHCGVDLERFPPR 171 (355)
T ss_pred cEEEEeCCcCHHHcCCc
Confidence 89999999998888765
No 52
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.89 E-value=6.5e-08 Score=98.39 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEe
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
+.||++|.+...|- +.||...+|..|+..|+++||+|+|+|........ . ..
T Consensus 1 mkkIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-----~----------------------~~ 52 (185)
T PF09314_consen 1 MKKIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-----E----------------------FE 52 (185)
T ss_pred CceEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-----C----------------------cc
Confidence 35899999999996 78999999999999999999999999876432110 0 01
Q ss_pred eCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHH---HHcCCCCCEEEEcCcc-cchHHHHHHHHhccCC
Q 003536 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL---LQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKG 666 (812)
Q Consensus 591 v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelL---kklg~kPDIIH~HDWh-TA~Vapl~lk~y~~~g 666 (812)
..|+++..++.+. . |. ...+.|...++..++ +.-..++||||+|.-- ++++.++. +.+.
T Consensus 53 y~gv~l~~i~~~~------~----g~---~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~-r~~~--- 115 (185)
T PF09314_consen 53 YNGVRLVYIPAPK------N----GS---AESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFL-RKLR--- 115 (185)
T ss_pred cCCeEEEEeCCCC------C----Cc---hHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHH-Hhhh---
Confidence 3566766665321 1 10 122233333333333 3334578999999876 34553433 3221
Q ss_pred CCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccc
Q 003536 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHST 746 (812)
Q Consensus 667 l~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~l 746 (812)
..+.|+|+++|+++|.+. +|.. +...+. + -.++.+.++||.+|+.|+.-.+-+ ..-
T Consensus 116 ~~g~~v~vN~DGlEWkR~----KW~~---~~k~~l------------k-~~E~~avk~ad~lIaDs~~I~~y~----~~~ 171 (185)
T PF09314_consen 116 KKGGKVVVNMDGLEWKRA----KWGR---PAKKYL------------K-FSEKLAVKYADRLIADSKGIQDYI----KER 171 (185)
T ss_pred hcCCcEEECCCcchhhhh----hcCH---HHHHHH------------H-HHHHHHHHhCCEEEEcCHHHHHHH----HHH
Confidence 136799999999998753 2321 111110 1 247889999999999999865541 000
Q ss_pred cccCCCCeEEEeCCCC
Q 003536 747 LNFHSKKFVGILNGID 762 (812)
Q Consensus 747 L~~~~eKI~gIpNGID 762 (812)
. ...+...|+||-|
T Consensus 172 y--~~~~s~~IaYGad 185 (185)
T PF09314_consen 172 Y--GRKKSTFIAYGAD 185 (185)
T ss_pred c--CCCCcEEecCCCC
Confidence 1 1367899999976
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.87 E-value=3.6e-08 Score=101.42 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=38.4
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~ 556 (812)
||++|+.-++|. ..||...++..|+++|.+.||+|+|+++...
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 699999988776 4799999999999999999999999997754
No 54
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.86 E-value=8.7e-08 Score=97.66 Aligned_cols=189 Identities=23% Similarity=0.180 Sum_probs=109.4
Q ss_pred EEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCC
Q 003536 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593 (812)
Q Consensus 514 IL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~G 593 (812)
|++|+..++|. ..||.+.++..+.++|.+.||+|+|+++......... ..... . ...
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~~--------~------------~~~ 57 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLD--LLKGR--------L------------VGV 57 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchh--hcccc--------c------------ccc
Confidence 57777765543 3599999999999999999999999987654321110 00000 0 000
Q ss_pred eeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEE
Q 003536 594 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC 673 (812)
Q Consensus 594 V~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvV 673 (812)
........ ..... ....+...+......+++....+||+||+|.+.........+.. ..++|++
T Consensus 58 ~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~i 121 (377)
T cd03798 58 ERLPVLLP----VVPLL-------KGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR-----KLGIPLV 121 (377)
T ss_pred cccccCcc----hhhcc-------ccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH-----hcCCCEE
Confidence 00000000 00000 00122234445555566533569999999954332221222221 2468999
Q ss_pred EEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCC
Q 003536 674 FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKK 753 (812)
Q Consensus 674 fTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eK 753 (812)
+++|+..+...... .......+..+..||.++++|+..++.+. ... ....+
T Consensus 122 ~~~h~~~~~~~~~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~----~~~-~~~~~ 172 (377)
T cd03798 122 VTLHGSDVNLLPRK------------------------RLLRALLRRALRRADAVIAVSEALADELK----ALG-IDPEK 172 (377)
T ss_pred EEeecchhcccCch------------------------hhHHHHHHHHHhcCCeEEeCCHHHHHHHH----Hhc-CCCCc
Confidence 99998754321000 00123567788899999999999887621 111 25689
Q ss_pred eEEEeCCCCCCCCCCCC
Q 003536 754 FVGILNGIDTDAWNPAT 770 (812)
Q Consensus 754 I~gIpNGID~d~WnP~t 770 (812)
+.+|+||+|...|.|..
T Consensus 173 ~~~i~~~~~~~~~~~~~ 189 (377)
T cd03798 173 VTVIPNGVDTERFSPAD 189 (377)
T ss_pred eEEcCCCcCcccCCCcc
Confidence 99999999999888754
No 55
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.85 E-value=7e-08 Score=99.80 Aligned_cols=184 Identities=19% Similarity=0.108 Sum_probs=104.3
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+..+.|. .||.+.++..|+++|.+.||+|+++++......... . .
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~-~------------------------- 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP--A-R------------------------- 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC--C-C-------------------------
Confidence 699999988885 599999999999999999999999998754321100 0 0
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
.+.+..+..+ .+ +...+.. .. .......++ ..+||+||+|.+.........+.. ..++|+
T Consensus 51 ~~~~~~~~~~----~~-~~~~~~~-~~-------~~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~-----~~~~~~ 110 (364)
T cd03814 51 VVPVPSVPLP----GY-PEIRLAL-PP-------RRRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR-----RLGIPV 110 (364)
T ss_pred ceeecccccC----cc-cceEecc-cc-------hhhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH-----HcCCCE
Confidence 0000000000 00 0000000 00 011122233 469999999975432221222221 147999
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~e 752 (812)
|+++|+.... .. ...... . .. +. ...+.+.....+|.++++|+.+.+.+ ......
T Consensus 111 i~~~~~~~~~-~~-----~~~~~~--~------~~---~~-~~~~~~~~~~~~d~i~~~s~~~~~~~-------~~~~~~ 165 (364)
T cd03814 111 VTSYHTDFPE-YL-----RYYGLG--P------LS---WL-AWAYLRWFHNRADRVLVPSPSLADEL-------RARGFR 165 (364)
T ss_pred EEEEecChHH-Hh-----hhcccc--h------Hh---Hh-hHHHHHHHHHhCCEEEeCCHHHHHHH-------hccCCC
Confidence 9999975321 00 000000 0 00 00 01345667788999999999988751 111236
Q ss_pred CeEEEeCCCCCCCCCCCCc
Q 003536 753 KFVGILNGIDTDAWNPATD 771 (812)
Q Consensus 753 KI~gIpNGID~d~WnP~tD 771 (812)
++.+|+||+|.+.|.|...
T Consensus 166 ~~~~~~~g~~~~~~~~~~~ 184 (364)
T cd03814 166 RVRLWPRGVDTELFHPRRR 184 (364)
T ss_pred ceeecCCCccccccCcccc
Confidence 7899999999998887643
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.82 E-value=3.8e-08 Score=109.41 Aligned_cols=190 Identities=15% Similarity=0.085 Sum_probs=101.9
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEe
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~ 590 (812)
..+|++++.-+ +|....+..++++|++.||+|+|+++..+..... . . .
T Consensus 3 ~~~~~~~~~~~------~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~-~--~-----------------------~ 50 (415)
T cd03816 3 RKRVCVLVLGD------IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE-I--L-----------------------S 50 (415)
T ss_pred ccEEEEEEecc------cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH-H--h-----------------------c
Confidence 45788887733 4556667889999999999999998764321100 0 0 1
Q ss_pred eCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHH---HHH-HHHHHHHHHHcCCCCCEEEEcCcccchHH--HHHHHHhcc
Q 003536 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRF---SFF-SRAALELLLQAGKQPDIIHCHDWQTAFVA--PLYWDLYVP 664 (812)
Q Consensus 591 v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~Rf---ifF-srAaLelLkklg~kPDIIH~HDWhTA~Va--pl~lk~y~~ 664 (812)
..||.++.+....+ .+.+ . ....++ .++ ..+.+..+.+ ..+|||||+|.-.+.+++ +.++..
T Consensus 51 ~~~v~~~~~~~~~~--~~~~-----~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~--- 118 (415)
T cd03816 51 NPNITIHPLPPPPQ--RLNK-----L-PFLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL--- 118 (415)
T ss_pred CCCEEEEECCCCcc--cccc-----c-hHHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH---
Confidence 24566666643100 0000 0 001111 111 1122222222 348999999974432211 222222
Q ss_pred CCCCCCcEEEEecCCccCCCCChhhhhhcCCC-cccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCc
Q 003536 665 KGLNSARVCFTCHNFEYQGTAPAKELASCGLD-VQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGL 743 (812)
Q Consensus 665 ~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp-~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL 743 (812)
..++|+|+|+|+..+. . . ..+.. ...+. + .. .-+++...+.||+|++||+..++. +
T Consensus 119 --~~~~~~V~~~h~~~~~----~--~-~~~~~~~~~~~---~-----~~--~~~e~~~~~~ad~ii~vS~~~~~~----l 175 (415)
T cd03816 119 --LRRTKLIIDWHNYGYT----I--L-ALKLGENHPLV---R-----LA--KWYEKLFGRLADYNLCVTKAMKED----L 175 (415)
T ss_pred --HhCCeEEEEcCCchHH----H--H-hcccCCCCHHH---H-----HH--HHHHHHHhhcCCEeeecCHHHHHH----H
Confidence 1478999999975321 0 0 00100 00000 0 00 123556678899999999998876 1
Q ss_pred ccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 744 HSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 744 ~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
.. .+.+..++.+||||. ...|.|.
T Consensus 176 ~~-~~~~~~ki~vI~Ng~-~~~f~p~ 199 (415)
T cd03816 176 QQ-FNNWKIRATVLYDRP-PEQFRPL 199 (415)
T ss_pred Hh-hhccCCCeeecCCCC-HHHceeC
Confidence 11 223568999999994 4567764
No 57
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.82 E-value=9.5e-09 Score=118.95 Aligned_cols=214 Identities=21% Similarity=0.325 Sum_probs=109.9
Q ss_pred EecccCCcccCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCccccccccc--------------c--cceeEEEeeecCC
Q 003536 517 IAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDD--------------L--RALDVVVESYFDG 579 (812)
Q Consensus 517 ISsE~aP~aKvGGLGdVV~~LsKALqk-lGheV~VItPkY~~i~~~~i~~--------------L--~gv~V~V~s~fdG 579 (812)
+|||+.- |+||+=.|+..=++.+++ .|-+..+|+|....-...++.. + .|+.+.+
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~------ 73 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRY------ 73 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEE------
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEE------
Confidence 6888765 699999999998888765 5889999999865421111100 1 2333322
Q ss_pred ceeeeEEEEEeeCCeeE-EEeCCCCCCCCCcC--------------CCCCCCCchHHHHHHHHHHHHHHHHHc---C--C
Q 003536 580 RLFKNKVWVSTIEGLPV-YFIEPHHPDKFFWR--------------GQFYGEHDDFRRFSFFSRAALELLLQA---G--K 639 (812)
Q Consensus 580 ~~~~~~Vw~~~v~GV~V-YfLd~~~ps~~F~R--------------~~lYG~~Dd~~RfifFsrAaLelLkkl---g--~ 639 (812)
.-| .++|.|. +++|.. .++++ +.+.++ .+..-.+.|+.++..++..+ . .
T Consensus 74 -----GRW--lI~G~P~vIL~D~~---s~~~~ldeik~~lW~~~gIdS~~~~-~dynea~~Fgyava~fi~~f~~~~~~~ 142 (633)
T PF05693_consen 74 -----GRW--LIPGRPIVILFDFG---SFFWKLDEIKGELWELFGIDSPHGD-GDYNEAVMFGYAVAWFIEEFYKFYEEK 142 (633)
T ss_dssp -----EEE--SSTT--EEEEEEGG---GGGGGHHHHHHHHHHHH-----TT--HHHHHHHHHHHHHHHHHHHHHHH-S-S
T ss_pred -----ece--eECCcCeEEEEeCc---hHHHHHHHHHHHHHHHcCCCCCCCC-cchhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 112 2456554 455632 12222 111111 11122445666665554432 1 2
Q ss_pred CCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCC-----CCCh-hhhhhcCCCcccccCCcccccCCCCC
Q 003536 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQG-----TAPA-KELASCGLDVQQLNRPDRMQDNSAHD 713 (812)
Q Consensus 640 kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG-----~f~~-~~L~~~GLp~e~f~~~D~led~~~~~ 713 (812)
..=|.|+|+|+||.. .++++.. ...+.+|||+|.....+ +.+. +.+.. ++.+. .......+.
T Consensus 143 ~~ViaHfHEWmaG~g-ll~lr~~----~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~--~~~d~-----eA~~~~i~~ 210 (633)
T PF05693_consen 143 PKVIAHFHEWMAGVG-LLYLRKR----KPDVATVFTTHATLLGRYLAANNKDFYNNLDK--FNGDQ-----EAGERNIYH 210 (633)
T ss_dssp EEEEEEEESGGGTTH-HHHHHHT----T-SCEEEEEESS-HHHHHHTTTSS-TTTSGTT--S-HHH-----HHHHTT-HH
T ss_pred CcEEEEechHhHhHH-HHHHhcc----CCCeeEEEEecccchhhHhhcCCCcHHHHhhc--cCccc-----cccCccchH
Confidence 334889999999997 5555543 24788999999884321 1110 01100 00000 000011245
Q ss_pred chhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCC
Q 003536 714 RINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWN 767 (812)
Q Consensus 714 ~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~Wn 767 (812)
+..+++.+..+||.+||||...+.|.. .+|. +.+=.++|||+|.+.+.
T Consensus 211 k~~iEraaA~~AdvFTTVSeITa~Ea~----~LL~--r~pDvV~pNGl~v~~~~ 258 (633)
T PF05693_consen 211 KHSIERAAAHYADVFTTVSEITAKEAE----HLLK--RKPDVVTPNGLNVDKFP 258 (633)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHHHH----HHHS--S--SEE----B-GGGTS
T ss_pred HHHHHHHHHHhcCeeeehhhhHHHHHH----HHhC--CCCCEEcCCCccccccc
Confidence 567899999999999999999999821 1232 23447899999987553
No 58
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.81 E-value=1.2e-07 Score=100.62 Aligned_cols=163 Identities=18% Similarity=0.081 Sum_probs=88.8
Q ss_pred CeEEEEecccCCcccCCCHHHHH---HHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEE
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVV---AGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV---~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~ 588 (812)
|||++++. |.|-++ ..|+++|.++||+|+|+++.++.. . .. +
T Consensus 1 ~~i~~~~g---------~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~-~-~~--~---------------------- 45 (348)
T TIGR01133 1 KKVVLAAG---------GTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE-K-RL--V---------------------- 45 (348)
T ss_pred CeEEEEeC---------ccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch-h-cc--c----------------------
Confidence 68887764 444444 589999999999999998654311 0 00 0
Q ss_pred EeeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCC
Q 003536 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (812)
Q Consensus 589 ~~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~ 668 (812)
...|++++.++... +.+..++........+........++++ ..+|||||+|.+.+++.+.+. .. ..
T Consensus 46 -~~~g~~~~~i~~~~----~~~~~~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~~~-~~-----~~ 112 (348)
T TIGR01133 46 -PKAGIEFYFIPVGG----LRRKGSFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAGLA-AK-----LL 112 (348)
T ss_pred -ccCCCceEEEeccC----cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHHHH-HH-----Hc
Confidence 01355555554210 0111111000000111111123334444 368999999988766653332 22 24
Q ss_pred CCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccc
Q 003536 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (812)
Q Consensus 669 ~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~ 748 (812)
++|+|++.|+..+ +. ..+....++|.++++|+...+. +
T Consensus 113 ~~p~v~~~~~~~~-------------------------------~~--~~~~~~~~~d~ii~~~~~~~~~--------~- 150 (348)
T TIGR01133 113 GIPLFHHEQNAVP-------------------------------GL--TNKLLSRFAKKVLISFPGAKDH--------F- 150 (348)
T ss_pred CCCEEEECCCCCc-------------------------------cH--HHHHHHHHhCeeEECchhHhhc--------C-
Confidence 7888754332110 00 1234456899999999977653 1
Q ss_pred cCCCCeEEEeCCCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~WnP 768 (812)
+..+|+||+|...|.|
T Consensus 151 ----~~~~i~n~v~~~~~~~ 166 (348)
T TIGR01133 151 ----EAVLVGNPVRQEIRSL 166 (348)
T ss_pred ----CceEEcCCcCHHHhcc
Confidence 3479999999776654
No 59
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.80 E-value=1.7e-07 Score=99.65 Aligned_cols=160 Identities=16% Similarity=0.018 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK 606 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~ 606 (812)
+||--.++..|+++|.++||+|+|+++...... . .. ...|++++.++...
T Consensus 9 ~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~---~~-----------------------~~~~~~~~~~~~~~--- 58 (350)
T cd03785 9 TGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R---LV-----------------------PKAGIPLHTIPVGG--- 58 (350)
T ss_pred chhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h---cc-----------------------cccCCceEEEEecC---
Confidence 355555667999999999999999987643110 0 00 01245555554210
Q ss_pred CCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCC
Q 003536 607 FFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAP 686 (812)
Q Consensus 607 ~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~ 686 (812)
+.+...+...-....+......+.++++ ..+|||||+|.+.+++.+ .++.. ..++|+|++.|+..+
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~~-~~~a~-----~~~~p~v~~~~~~~~----- 124 (350)
T cd03785 59 -LRRKGSLKKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGPV-GLAAK-----LLGIPLVIHEQNAVP----- 124 (350)
T ss_pred -cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchHH-HHHHH-----HhCCCEEEEcCCCCc-----
Confidence 1111111000001111122223334444 358999999988766553 22222 247899876654210
Q ss_pred hhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCC
Q 003536 687 AKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 687 ~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~W 766 (812)
+ ...+.....+|.|+++|+...+. .+..++++|+||+|.+.+
T Consensus 125 --------------------------~--~~~~~~~~~~~~vi~~s~~~~~~----------~~~~~~~~i~n~v~~~~~ 166 (350)
T cd03785 125 --------------------------G--LANRLLARFADRVALSFPETAKY----------FPKDKAVVTGNPVREEIL 166 (350)
T ss_pred --------------------------c--HHHHHHHHhhCEEEEcchhhhhc----------CCCCcEEEECCCCchHHh
Confidence 0 01233456689999999976542 245789999999998877
Q ss_pred CC
Q 003536 767 NP 768 (812)
Q Consensus 767 nP 768 (812)
.|
T Consensus 167 ~~ 168 (350)
T cd03785 167 AL 168 (350)
T ss_pred hh
Confidence 65
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.80 E-value=1e-07 Score=98.90 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=98.1
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+. ++|. .||.+.++..|+++|.+.||+|+|++......... .. . . ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~---~~------------~-~---------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL---YG------------G-E---------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc---CC------------C-c---------cc
Confidence 6899976 5664 69999999999999999999999998654321100 00 0 0 00
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHH--HHHhccCCCCCC
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLY--WDLYVPKGLNSA 670 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~--lk~y~~~gl~~i 670 (812)
+... +.. +. .. ......+.++. .+|||||+|.|.+.+.+... +.... ...++
T Consensus 53 ~~~~--~~~------------~~----~~----~~~~~~~~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~--~~~~~ 106 (366)
T cd03822 53 VVRV--IVL------------DN----PL----DYRRAARAIRL--SGPDVVVIQHEYGIFGGEAGLYLLLLL--RGLGI 106 (366)
T ss_pred ceee--eec------------CC----ch----hHHHHHHHHhh--cCCCEEEEeeccccccchhhHHHHHHH--hhcCC
Confidence 0000 000 00 00 00122333443 48999999998654432111 11110 12579
Q ss_pred cEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccC
Q 003536 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFH 750 (812)
Q Consensus 671 PvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~ 750 (812)
|+|+++|+....... .....+.+..+..+|.|+++|....+++.. ...
T Consensus 107 ~~i~~~h~~~~~~~~--------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~------~~~ 154 (366)
T cd03822 107 PVVVTLHTVLLHEPR--------------------------PGDRALLRLLLRRADAVIVMSSELLRALLL------RAY 154 (366)
T ss_pred CEEEEEecCCccccc--------------------------hhhhHHHHHHHhcCCEEEEeeHHHHHHHHh------hcC
Confidence 999999987111000 000124566788999999998444433110 011
Q ss_pred CCCeEEEeCCCCCCCCCCC
Q 003536 751 SKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 751 ~eKI~gIpNGID~d~WnP~ 769 (812)
..++.+||||+|...+.+.
T Consensus 155 ~~~~~~i~~~~~~~~~~~~ 173 (366)
T cd03822 155 PEKIAVIPHGVPDPPAEPP 173 (366)
T ss_pred CCcEEEeCCCCcCcccCCc
Confidence 4799999999998776553
No 61
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.75 E-value=1.4e-07 Score=95.51 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=104.8
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++++..+. .||.+.++..|+++|.+.||+|+|+++......... .. .. ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~---~~-----------~~----------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLEL---LP-----------SN----------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccc---cc-----------cc----------hh
Confidence 6888887653 599999999999999999999999987654321100 00 00 00
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCc-ccchHHHHHHHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDW-hTA~Vapl~lk~y~~~gl~~iP 671 (812)
........ .. .+. ...+.....++++. .+||+||+|.+ .+.++ ..+... .++|
T Consensus 53 ~~~~~~~~--------~~--~~~-------~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~-~~~~~~------~~~~ 106 (353)
T cd03811 53 LIPVRVLK--------LK--SLR-------DLLAILRLRRLLRK--EKPDVVISHLTTTPNVL-ALLAAR------LGTK 106 (353)
T ss_pred hhceeeee--------cc--ccc-------chhHHHHHHHHHHh--cCCCEEEEcCccchhHH-HHHHhh------cCCc
Confidence 00000000 00 000 01122333444553 48999999998 44433 222111 2789
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|+++|+..+...... .......+..+..+|.++++|+..++.+ ........
T Consensus 107 ~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~----~~~~~~~~ 158 (353)
T cd03811 107 LIVWEHNSLSLELKRK------------------------LRLLLLIRKLYRRADKIVAVSEGVKEDL----LKLLGIPP 158 (353)
T ss_pred eEEEEcCcchhhhccc------------------------hhHHHHHHhhccccceEEEeccchhhhH----HHhhcCCc
Confidence 9999998753321100 0000245667788999999999988761 11112235
Q ss_pred CCeEEEeCCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~t 770 (812)
.++.+||||+|.+.+.+..
T Consensus 159 ~~~~vi~~~~~~~~~~~~~ 177 (353)
T cd03811 159 DKIEVIYNPIDIEEIRALA 177 (353)
T ss_pred cccEEecCCcChhhcCccc
Confidence 7899999999998887653
No 62
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.73 E-value=8.8e-08 Score=103.54 Aligned_cols=167 Identities=12% Similarity=0.136 Sum_probs=95.0
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEE
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqkl--GheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~ 589 (812)
|||++++. +.|. .||...++..|+++|.+. ||+|++++|...... . .+...... .
T Consensus 1 mkI~~~~~-~~~~--~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~---~~~~~~~~-----------~----- 57 (359)
T PRK09922 1 MKIAFIGE-AVSG--FGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-A---WLKEIKYA-----------Q----- 57 (359)
T ss_pred CeeEEecc-cccC--CCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-H---HHHhcchh-----------c-----
Confidence 89999976 4443 599999999999999999 899999998654211 0 01100000 0
Q ss_pred eeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCC
Q 003536 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (812)
Q Consensus 590 ~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~ 669 (812)
....+.+.+ +...+ . .....+++++ .+|||||||+..+.+++.++.+.+ -.+
T Consensus 58 ~~~~~~~~~---------------~~~~~---~----~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~~~----~~~ 109 (359)
T PRK09922 58 SFSNIKLSF---------------LRRAK---H----VYNFSKWLKE--TQPDIVICIDVISCLYANKARKKS----GKQ 109 (359)
T ss_pred ccccchhhh---------------hcccH---H----HHHHHHHHHh--cCCCEEEEcCHHHHHHHHHHHHHh----CCC
Confidence 000111100 00000 0 1122344553 589999999876655533332221 124
Q ss_pred CcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh-hccCcccccc
Q 003536 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLN 748 (812)
Q Consensus 670 iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~ 748 (812)
.+++.++|..... . .+ . ....+..||.++++|+...+. ...|
T Consensus 110 ~~~~~~~h~~~~~-~--------------~~-----------~-----~~~~~~~~d~~i~~S~~~~~~~~~~~------ 152 (359)
T PRK09922 110 FKIFSWPHFSLDH-K--------------KH-----------A-----ECKKITCADYHLAISSGIKEQMMARG------ 152 (359)
T ss_pred CeEEEEecCcccc-c--------------ch-----------h-----hhhhhhcCCEEEEcCHHHHHHHHHcC------
Confidence 5677777743100 0 00 0 011236799999999998776 2222
Q ss_pred cCCCCeEEEeCCCCCCCC
Q 003536 749 FHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 749 ~~~eKI~gIpNGID~d~W 766 (812)
.+..++.+||||||.+.+
T Consensus 153 ~~~~ki~vi~N~id~~~~ 170 (359)
T PRK09922 153 ISAQRISVIYNPVEIKTI 170 (359)
T ss_pred CCHHHEEEEcCCCCHHHc
Confidence 244689999999996654
No 63
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.73 E-value=3.9e-08 Score=112.16 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=42.5
Q ss_pred CCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCC-CeEEEEecCCCc
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPKYDC 557 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklG-heV~VItPkY~~ 557 (812)
++|||+++|.-|.|. ++|.+.-+.-++..|+++| |+|+||.|.|..
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~ 49 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSL 49 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCcc
Confidence 569999999999997 7999999999999999999 799999999863
No 64
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.71 E-value=8.8e-08 Score=101.35 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhH
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNl 717 (812)
..+|||||+|.+..++.+..+.+. .++|+|+|+|+.......... .+. . +.....+
T Consensus 80 ~~~~dvvh~~~~~~~~~~~~~~~~------~~~p~i~~~h~~~~~~~~~~~---~~~----------~-----~~~~~~~ 135 (367)
T cd05844 80 RHRPDLVHAHFGFDGVYALPLARR------LGVPLVVTFHGFDATTSLALL---LRS----------R-----WALYARR 135 (367)
T ss_pred hhCCCEEEeccCchHHHHHHHHHH------cCCCEEEEEeCccccccchhh---ccc----------c-----hhHHHHH
Confidence 358999999977665553332332 479999999976432110000 000 0 0001124
Q ss_pred HHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 718 LKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 718 lK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
.+..+..||.|+++|+..++. ...| .+..++.+|+||+|.+.|.|.
T Consensus 136 ~~~~~~~~d~ii~~s~~~~~~~~~~~------~~~~~i~vi~~g~d~~~~~~~ 182 (367)
T cd05844 136 RRRLARRAALFIAVSQFIRDRLLALG------FPPEKVHVHPIGVDTAKFTPA 182 (367)
T ss_pred HHHHHHhcCEEEECCHHHHHHHHHcC------CCHHHeEEecCCCCHHhcCCC
Confidence 566778999999999988776 1212 245789999999999888764
No 65
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.70 E-value=6.6e-07 Score=83.42 Aligned_cols=138 Identities=25% Similarity=0.397 Sum_probs=81.7
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+... ..++..++++|.+.|++|+|+++..+..... ...
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~----------------------------~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKYE----------------------------IIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhhh----------------------------HhC
Confidence 688887643 3468899999999999999999854321100 024
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCccc-chHHHHHHHHhccCCCCCCc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhT-A~Vapl~lk~y~~~gl~~iP 671 (812)
|++++.++.+ +.... ..+.+ ....+++++ .+|||||||...+ ++++.++.+. ...+|
T Consensus 44 ~i~~~~~~~~-------~k~~~------~~~~~--~~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~-----~~~~~ 101 (139)
T PF13477_consen 44 GIKVIRLPSP-------RKSPL------NYIKY--FRLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKL-----LKNKK 101 (139)
T ss_pred CeEEEEecCC-------CCccH------HHHHH--HHHHHHhcc--CCCCEEEEecCChHHHHHHHHHHH-----cCCCC
Confidence 5556655321 11110 11111 133444553 4799999999776 6664443332 12389
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVS 732 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVS 732 (812)
+|+|.|+..+-..-....+ .-.+.+.++..||.|++.|
T Consensus 102 ~i~~~hg~~~~~~~~~~~~-----------------------~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 102 VIYTVHGSDFYNSSKKKKL-----------------------KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred EEEEecCCeeecCCchHHH-----------------------HHHHHHHHHHhCCEEEEcC
Confidence 9999998753111000000 0125678999999999886
No 66
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.69 E-value=1.9e-07 Score=103.95 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhH
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNl 717 (812)
..+||+||||.|+++.++..+.. . +..+.|+++|+|+...... . + .. .+. ..
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~-~---~~~~~~~~~t~Hg~d~~~~---~-~---------------~~---~~~--~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLRE-L---GVLRGKIATIFHGIDISSR---E-V---------------LN---HYT--PE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHH-h---CCCCCCeEEEEcccccccc---h-h---------------hh---hhh--HH
Confidence 46899999999988766433322 1 1234577899997642110 0 0 00 011 13
Q ss_pred HHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 718 lK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
.+..+..||.|++||...++.. .. ++.+.+|+++||||||.+.|.|.
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l----~~-~g~~~~ki~vi~nGvd~~~f~~~ 214 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRL----QK-MGCPPEKIAVSRMGVDMTRFSPR 214 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHH----HH-cCCCHHHEEEcCCCCCHHHcCCC
Confidence 4556788999999999877651 11 12355789999999999988653
No 67
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.68 E-value=5.6e-07 Score=91.66 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=108.0
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++|+.. .||...++..|+++|.+.||+|+++++....... . ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----~-----------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----L-----------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----c-----------------------ccC
Confidence 68888875 4899999999999999999999999876432210 0 012
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcE
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPv 672 (812)
|+.++.++.. +.... ..+.........++++ ..+|||||+|.+.+++++.+.... ....++
T Consensus 47 ~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD-------RRGIN-----PFKDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEecccc-------ccccC-----hHhHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 4444444321 00000 0111122223344454 358999999988777664433221 135679
Q ss_pred EEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhh-ccCcccccccCC
Q 003536 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHS 751 (812)
Q Consensus 673 VfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~-G~GL~~lL~~~~ 751 (812)
++++|+..+....... . .. -...+.+..+..+|.++++|+...+.+ ..+. ..+.
T Consensus 108 i~~~~~~~~~~~~~~~-~-------~~-------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~----~~~~ 162 (359)
T cd03808 108 IYTVHGLGFVFTSGGL-K-------RR-------------LYLLLERLALRFTDKVIFQNEDDRDLALKLGI----IKKK 162 (359)
T ss_pred EEEecCcchhhccchh-H-------HH-------------HHHHHHHHHHhhccEEEEcCHHHHHHHHHhcC----CCcC
Confidence 9999987543211100 0 00 001245677888999999999988761 1111 1124
Q ss_pred CCeEEEeCCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~t 770 (812)
.++.+++||+|.+.+.|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (359)
T cd03808 163 KTVLIPGSGVDLDRFSPSP 181 (359)
T ss_pred ceEEecCCCCChhhcCccc
Confidence 6788999999998876643
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=1.5e-05 Score=95.29 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhchhhHHHHHH---HHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcch----------h
Q 003536 389 KMKLLEERLQRSDEEIHSYVQ---LYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIID----------G 455 (812)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id----------~ 455 (812)
-+..++.++.+.|+-...+-. +.=+.+..+.....-|+.+.+--.. ..|.+-+|..+ +
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA---------~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAG---------RAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHH---------HHHHHHHhhcCCCCHHHHHHHH
Confidence 345566666666665544433 3334555555555555554433111 23444444433 6
Q ss_pred hhHHhhcCcHHHHHHHHHHHhhcCcchhHhh
Q 003536 456 WLLEKKLSTSEAKLLREMVWKRNGRIRDAYM 486 (812)
Q Consensus 456 ~~l~~~~~~~e~~~l~~~v~~~~~~~~d~y~ 486 (812)
+.|..+=..++|..+|+.+-...+....+++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 7778888888999999988865555455544
No 69
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.65 E-value=4.5e-07 Score=91.93 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=102.8
Q ss_pred eEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeC
Q 003536 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~ 592 (812)
||++++..+.| .||...++..|+++|.+.||+|+|+++....... ... ..
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~------------------------~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPPF---YEL------------------------DP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc---ccc------------------------CC
Confidence 68999887665 5999999999999999999999999877653000 000 11
Q ss_pred CeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCC-Cc
Q 003536 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS-AR 671 (812)
Q Consensus 593 GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~-iP 671 (812)
++.+..+.... ..+ .+ ....+.....++++ ..+||+||+|++.... +. ... ..+ +|
T Consensus 51 ~~~~~~~~~~~----~~~--~~-------~~~~~~~~~~~~l~--~~~~d~i~~~~~~~~~---~~-~~~----~~~~~~ 107 (348)
T cd03820 51 KIKVIDLGDKR----DSK--LL-------ARFKKLRRLRKLLK--NNKPDVVISFLTSLLT---FL-ASL----GLKIVK 107 (348)
T ss_pred ccceeeccccc----ccc--hh-------ccccchHHHHHhhc--ccCCCEEEEcCchHHH---HH-HHH----hhcccc
Confidence 22222222100 000 00 00111122333344 2599999999988111 11 111 023 59
Q ss_pred EEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCC
Q 003536 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~ 751 (812)
+|++.|+........ .......+..+..+|.++++|+..+... .....
T Consensus 108 ~i~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~-------~~~~~ 155 (348)
T cd03820 108 LIVSEHNSPDAYKKR-------------------------LRRLLLRRLLYRRADAVVVLTEEDRALY-------YKKFN 155 (348)
T ss_pred EEEecCCCccchhhh-------------------------hHHHHHHHHHHhcCCEEEEeCHHHHHHh-------hccCC
Confidence 999999764221100 0001136778899999999999986321 12245
Q ss_pred CCeEEEeCCCCCCCCCCC
Q 003536 752 KKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 752 eKI~gIpNGID~d~WnP~ 769 (812)
.++.+||||+|...+.+.
T Consensus 156 ~~~~vi~~~~~~~~~~~~ 173 (348)
T cd03820 156 KNVVVIPNPLPFPPEEPS 173 (348)
T ss_pred CCeEEecCCcChhhcccc
Confidence 789999999999887654
No 70
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=98.57 E-value=9.6e-08 Score=104.77 Aligned_cols=182 Identities=19% Similarity=0.266 Sum_probs=114.7
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEee
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v 591 (812)
++|+||+.-++|- .||...+++.|++.|-++||.|.|++-.|+... |+. ..-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~--------gir------------------ylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV--------GIR------------------YLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc--------cee------------------eec
Confidence 5799999999996 799999999999999999999999999997531 110 112
Q ss_pred CCeeEEEeCCCCCCCCCcC----CCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCC
Q 003536 592 EGLPVYFIEPHHPDKFFWR----GQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (812)
Q Consensus 592 ~GV~VYfLd~~~ps~~F~R----~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl 667 (812)
+|++||+++... +.+ +.+|+. |..| +.. +++ .+..|||.|.-.++++ --.+.+ + +.
T Consensus 53 ~glkVyylp~~v----~~n~tT~ptv~~~------~Pll-r~i--~lr---E~I~ivhghs~fS~la-he~l~h-a--rt 112 (426)
T KOG1111|consen 53 NGLKVYYLPAVV----GYNQTTFPTVFSD------FPLL-RPI--LLR---ERIEIVHGHSPFSYLA-HEALMH-A--RT 112 (426)
T ss_pred CCceEEEEeeee----eecccchhhhhcc------Cccc-chh--hhh---hceEEEecCChHHHHH-HHHHHH-H--Hh
Confidence 567888776321 111 123332 1111 111 122 3789999997665554 222221 1 13
Q ss_pred CCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCccccc
Q 003536 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL 747 (812)
Q Consensus 668 ~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL 747 (812)
.+.++|||-|.+- |..+.. .-. .+ ..+...+...|++|+||.+-++- --+...
T Consensus 113 MGlktVfTdHSlf--Gfad~~--------si~------------~n--~ll~~sL~~id~~IcVshtsken--tvlr~~- 165 (426)
T KOG1111|consen 113 MGLKTVFTDHSLF--GFADIG--------SIL------------TN--KLLPLSLANIDRIICVSHTSKEN--TVLRGA- 165 (426)
T ss_pred cCceEEEeccccc--cccchh--------hhh------------hc--ceeeeeecCCCcEEEEeecCCCc--eEEEec-
Confidence 5789999999862 311110 000 01 12334556789999999987654 001111
Q ss_pred ccCCCCeEEEeCCCCCCCCCCC
Q 003536 748 NFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 748 ~~~~eKI~gIpNGID~d~WnP~ 769 (812)
....++.+|||.+++..|.|.
T Consensus 166 -L~p~kvsvIPnAv~~~~f~P~ 186 (426)
T KOG1111|consen 166 -LAPAKVSVIPNAVVTHTFTPD 186 (426)
T ss_pred -cCHhHeeeccceeeccccccC
Confidence 245899999999999999993
No 71
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.46 E-value=1.5e-06 Score=103.14 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHH-HHc---CC------CCCEEEEcCcccchHHHHHHHHhccC-CC--------CCCcEEEEecCCccCC
Q 003536 623 FSFFSRAALELL-LQA---GK------QPDIIHCHDWQTAFVAPLYWDLYVPK-GL--------NSARVCFTCHNFEYQG 683 (812)
Q Consensus 623 fifFsrAaLelL-kkl---g~------kPDIIH~HDWhTA~Vapl~lk~y~~~-gl--------~~iPvVfTIHNleyqG 683 (812)
.-||+.|++.-+ ++. +. .+-+||+||.|++++.+-.++.+++. |+ .+.-++||.|++.+.|
T Consensus 187 qyf~vsa~lqdiir~~~~~~~~~~~~~~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpea 266 (713)
T PF00343_consen 187 QYFFVSASLQDIIRRFKKSHGDLREFPDKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEA 266 (713)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGG
T ss_pred HhhhhhhHHHHHHHHHHHhCCChHHCCcceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeecccccccc
Confidence 457777777654 322 21 23499999999999966556666542 32 2345999999998888
Q ss_pred --CCChhhhhh-----------------------cCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh
Q 003536 684 --TAPAKELAS-----------------------CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE 738 (812)
Q Consensus 684 --~f~~~~L~~-----------------------~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE 738 (812)
.||.+.+.. .+.+.+.+..+.-++ ......++|...|++.|..|++||..|.+.
T Consensus 267 lE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~-~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev 345 (713)
T PF00343_consen 267 LEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIE-EGNSKRFRMANLALRGSHSVNGVSKLHGEV 345 (713)
T ss_dssp S-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEE-TSSSCEEEHHHHHHHCESEEEESSHHHHHH
T ss_pred ccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhccccc-ccchhhcchhHHHHHhcccccchHHHHHHH
Confidence 355544321 111111111110011 112357999999999999999999999875
Q ss_pred -hccCcccccccCCCCeEEEeCCCCCCCCCC
Q 003536 739 -GGQGLHSTLNFHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 739 -~G~GL~~lL~~~~eKI~gIpNGID~d~WnP 768 (812)
-..-........+.||.-|+|||++.+|--
T Consensus 346 ~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~ 376 (713)
T PF00343_consen 346 LKQMVFKDFYELWPEKFGNVTNGVHPRRWLS 376 (713)
T ss_dssp HHHTTTHHHHHHSGGGEEE----B-TCCCCC
T ss_pred HHHHHhhhhhhcCCceeeccccCccCccccc
Confidence 111111122234578999999999999964
No 72
>PLN02275 transferase, transferring glycosyl groups
Probab=98.33 E-value=5.7e-06 Score=90.67 Aligned_cols=184 Identities=12% Similarity=-0.012 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHCCC-eEEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCCC
Q 003536 528 GGLGDVVAGLGKALQKKGH-LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK 606 (812)
Q Consensus 528 GGLGdVV~~LsKALqklGh-eV~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps~ 606 (812)
+|....+..++.+++++|+ +|+|++........+ .. ...||+++.+..+ .
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~---~~-----------------------~~~~v~v~r~~~~--~- 65 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA---LL-----------------------NHPSIHIHLMVQP--R- 65 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH---Hh-----------------------cCCcEEEEECCCc--c-
Confidence 6778889999999999886 799998543211100 00 1235666665421 0
Q ss_pred CCcCCCCCCCCchHHHH-HHHHHHHHHHHHHcCCCCCEEEEcCcccchH--HHHHHHHhccCCCCCCcEEEEecCCccCC
Q 003536 607 FFWRGQFYGEHDDFRRF-SFFSRAALELLLQAGKQPDIIHCHDWQTAFV--APLYWDLYVPKGLNSARVCFTCHNFEYQG 683 (812)
Q Consensus 607 ~F~R~~lYG~~Dd~~Rf-ifFsrAaLelLkklg~kPDIIH~HDWhTA~V--apl~lk~y~~~gl~~iPvVfTIHNleyqG 683 (812)
....-..+-..-....+ +.+..+.+.++.....+|||||+|.-+..++ +..+... ..++|+|+|+|+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~~~~- 139 (371)
T PLN02275 66 LLQRLPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW-----LRRAKFVIDWHNFGYT- 139 (371)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-----HhCCCEEEEcCCccHH-
Confidence 00000000000000011 1111233333322357999999997553221 1112221 2478999999986311
Q ss_pred CCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCC
Q 003536 684 TAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDT 763 (812)
Q Consensus 684 ~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~ 763 (812)
....|...... + ..-...+++...+.||.|+++|+...+... ... ..++.+||||+ .
T Consensus 140 ------~~~~~~~~~~~-----~----~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~----~~~---g~~i~vi~n~~-~ 196 (371)
T PLN02275 140 ------LLALSLGRSHP-----L----VRLYRWYERHYGKMADGHLCVTKAMQHELD----QNW---GIRATVLYDQP-P 196 (371)
T ss_pred ------HHhcccCCCCH-----H----HHHHHHHHHHHHhhCCEEEECCHHHHHHHH----Hhc---CCCeEEECCCC-H
Confidence 00111100000 0 000012467778899999999999987610 001 11389999995 4
Q ss_pred CCCCCC
Q 003536 764 DAWNPA 769 (812)
Q Consensus 764 d~WnP~ 769 (812)
+.|.|.
T Consensus 197 ~~f~~~ 202 (371)
T PLN02275 197 EFFRPA 202 (371)
T ss_pred HHcCcC
Confidence 667664
No 73
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=98.18 E-value=8.5e-05 Score=85.25 Aligned_cols=235 Identities=19% Similarity=0.205 Sum_probs=107.5
Q ss_pred hhhhhhhHHhhhhccCCCCCCCCeEEEEeccc---------CCcccCCCHHHHHHHHHHHHHH--------CCCe----E
Q 003536 490 EKNEHEAISTFLKLTSSSISSGLHVIHIAAEM---------APVAKVGGLGDVVAGLGKALQK--------KGHL----V 548 (812)
Q Consensus 490 ~~~~~e~~~~~~~~~~~~~~~~MKIL~ISsE~---------aP~aKvGGLGdVV~~LsKALqk--------lGhe----V 548 (812)
+..+...++.|.+.... -.+|++|+... .|- +||.-.||-++++||.+ +|.+ |
T Consensus 255 ~aPdp~~LE~Fl~RiPm----vf~vvliSpHG~f~q~nvLG~pD--TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i 328 (550)
T PF00862_consen 255 EAPDPSTLEKFLSRIPM----VFNVVLISPHGYFGQENVLGRPD--TGGQVVYVLEQARALENEMLYRIKLQGLDITPKI 328 (550)
T ss_dssp HS--HHHHHHHHHHS-------SEEEEE--SS--STTSTTSSTT--SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EE
T ss_pred hCCCchHHHHHhhhcce----eEEEEEEcCccccccccccCCCC--CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 33455555665543221 25778777763 253 89999999999999975 3554 6
Q ss_pred EEEecCCCccccccc-ccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCC----CCCCcCCCCCCCCchHHHH
Q 003536 549 EIVLPKYDCMQYDRI-DDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP----DKFFWRGQFYGEHDDFRRF 623 (812)
Q Consensus 549 ~VItPkY~~i~~~~i-~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~p----s~~F~R~~lYG~~Dd~~Rf 623 (812)
.|+|+.-+....... ..++ ++.|. ++..+..|+-... .++..|..++++- ++
T Consensus 329 ~i~TRlIpd~~~t~~~q~le--------~~~gt-----------~~a~IlRvPF~~~~gi~~kwisrf~lWPyL---e~- 385 (550)
T PF00862_consen 329 DIVTRLIPDAKGTTCNQRLE--------KVSGT-----------ENARILRVPFGPEKGILRKWISRFDLWPYL---EE- 385 (550)
T ss_dssp EEEEE--TBTTCGGGTSSEE--------EETTE-----------SSEEEEEE-ESESTEEE-S---GGG-GGGH---HH-
T ss_pred eeecccccCCcCCCcccccc--------ccCCC-----------CCcEEEEecCCCCcchhhhccchhhchhhH---HH-
Confidence 777765432211000 0110 01121 1222333321100 1244555666552 12
Q ss_pred HHHHHHHHHH-HHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccC
Q 003536 624 SFFSRAALEL-LLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNR 702 (812)
Q Consensus 624 ifFsrAaLel-Lkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~ 702 (812)
|+..+... +...+..||+||.|..-++++|.++... .++|.++|-|.++-+ ++...++.++.+.
T Consensus 386 --fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek~------Ky~~s~~~w~e~e- 450 (550)
T PF00862_consen 386 --FADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK------LGVTQCFIAHSLEKT------KYEDSDLYWKEIE- 450 (550)
T ss_dssp --HHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH------HT-EEEEE-SS-HHH------HHHTTTTTSHHHH-
T ss_pred --HHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh------cCCceehhhhccccc------cccccCCCHHHHH-
Confidence 33444433 3456789999999998899997666554 389999999999522 2211122211110
Q ss_pred CcccccCCCCCchhHHHHHHHHcCcEEecCcchhhh----hc-c---------Ccccc---cccCCCCeEEEeCCCCCCC
Q 003536 703 PDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----GG-Q---------GLHST---LNFHSKKFVGILNGIDTDA 765 (812)
Q Consensus 703 ~D~led~~~~~~vNllK~AI~~AD~VITVSptyAeE----~G-~---------GL~~l---L~~~~eKI~gIpNGID~d~ 765 (812)
+.+.+..++.....|+.+||.|||-+...-.+ +| + ||-.. +....-|+.+|+.|+|.+.
T Consensus 451 ----~~Yhfs~qftAd~iamn~adfIItST~QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PGad~~i 526 (550)
T PF00862_consen 451 ----EKYHFSCQFTADLIAMNAADFIITSTYQEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPGADESI 526 (550)
T ss_dssp ----HHH-HHHHHHHHHHHHHHSSEEEESSHHHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE------TTT
T ss_pred ----hhccchhhhhHHHHHhhcCCEEEEcchHhhcCCccccCCccchhhcchHhHHhhhccccccCCcccccCCCCCcce
Confidence 00001234666789999999999865432222 11 0 11100 1123467778888888888
Q ss_pred CCCCCch
Q 003536 766 WNPATDT 772 (812)
Q Consensus 766 WnP~tDk 772 (812)
|.|.+.+
T Consensus 527 yFpyt~~ 533 (550)
T PF00862_consen 527 YFPYTEK 533 (550)
T ss_dssp S--TT-T
T ss_pred ecCCccc
Confidence 8877654
No 74
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.16 E-value=1.8e-06 Score=94.67 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=62.7
Q ss_pred CCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhh-cCCCcccccCCcccccCCCCCchhH
Q 003536 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELAS-CGLDVQQLNRPDRMQDNSAHDRINP 717 (812)
Q Consensus 639 ~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~-~GLp~e~f~~~D~led~~~~~~vNl 717 (812)
.+||+||+|....+.. ... ...++|+|++.|+....-. . .+.. .+.+...+. +++ ..-...+
T Consensus 103 ~~~D~v~~~~~~~~~~---~~~-----~~~~~p~i~~~~d~~~~~~--~-~~~~~~~~~~~~~~---~~~---~~~~~~~ 165 (397)
T TIGR03087 103 EPVDAIVVFSSAMAQY---VTP-----HVRGVPRIVDFVDVDSDKW--L-QYARTKRWPLRWIY---RRE---GRLLLAY 165 (397)
T ss_pred CCCCEEEEecccccee---ccc-----cccCCCeEeehhhHHHHHH--H-HHHhccCcchhHHH---HHH---HHHHHHH
Confidence 5899999996433221 111 1247899999998642110 0 0000 001100100 000 0000135
Q ss_pred HHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 718 lK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
++..+..||.|++||+..++.+. ........++.+||||||++.|.|.
T Consensus 166 e~~~~~~ad~vi~~S~~~~~~l~----~~~~~~~~~v~vipngvd~~~f~~~ 213 (397)
T TIGR03087 166 ERAIAARFDAATFVSRAEAELFR----RLAPEAAGRITAFPNGVDADFFSPD 213 (397)
T ss_pred HHHHHhhCCeEEEcCHHHHHHHH----HhCCCCCCCeEEeecccchhhcCCC
Confidence 67888999999999998877621 1111235789999999999988775
No 75
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.06 E-value=5.2e-05 Score=88.65 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEE-EecCCccCCCCChhhhhhcCCCcccccCCcccc
Q 003536 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQ 707 (812)
Q Consensus 629 AaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVf-TIHNleyqG~f~~~~L~~~GLp~e~f~~~D~le 707 (812)
+...+++. .+|||||+|.-.+.+.+.+... +.++|+++ |.|+ .+... ...
T Consensus 271 ~l~~~ir~--~rpDIVHt~~~~a~l~g~laA~------lagvpviv~~~h~-~~~~~-~~r------------------- 321 (578)
T PRK15490 271 HLVPHLCE--RKLDYLSVWQDGACLMIALAAL------IAGVPRIQLGLRG-LPPVV-RKR------------------- 321 (578)
T ss_pred HHHHHHHH--cCCCEEEEcCcccHHHHHHHHH------hcCCCEEEEeecc-cCCcc-hhh-------------------
Confidence 33444553 5999999999776555433322 24788754 5675 11110 000
Q ss_pred cCCCCCchhHHHHH-------HHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 003536 708 DNSAHDRINPLKGA-------IVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 708 d~~~~~~vNllK~A-------I~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~t 770 (812)
.+..+... +..+| ++++|...++. +...+..+..||++||||||+..|.|..
T Consensus 322 ------~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~----l~~~lgip~~KI~VIyNGVD~~rf~p~~ 380 (578)
T PRK15490 322 ------LFKPEYEPLYQALAVVPGVD-FMSNNHCVTRH----YADWLKLEAKHFQVVYNGVLPPSTEPSS 380 (578)
T ss_pred ------HHHHHHHHhhhhceeEecch-hhhccHHHHHH----HHHHhCCCHHHEEEEeCCcchhhcCccc
Confidence 00111112 23344 55666654443 1112334778999999999999888853
No 76
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.83 E-value=2.6e-05 Score=88.62 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=63.4
Q ss_pred CCCCCEEEEcCcc-cchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCc-h
Q 003536 638 GKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR-I 715 (812)
Q Consensus 638 g~kPDIIH~HDWh-TA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~-v 715 (812)
-.++||||+|... +++++.+.... .++|+|+|.|+....-. ...+.........+. .+ |... .
T Consensus 171 ~~~~dviH~~s~~~~g~~~~~~~~~------~~~p~I~t~Hg~~~~e~--~~~~~~~~~~~~~~~---~~----~~~~~~ 235 (475)
T cd03813 171 LPKADVYHAVSTGYAGLLGALAKAR------RGTPFLLTEHGIYTRER--KIELLQADWEMSYFR---RL----WIRFFE 235 (475)
T ss_pred CCCCCEEeccCcchHHHHHHHHHHH------hCCCEEEecCCccHHHH--HHHHHhcccchHHHH---HH----HHHHHH
Confidence 3588999999642 34443332222 48999999997532100 000000000000000 00 0000 1
Q ss_pred hHHHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 716 NPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 716 NllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
.+.+.+...||.|+++|+...+. .. ++.+..|+.+||||||++.|.|.
T Consensus 236 ~l~~~~~~~ad~Ii~~s~~~~~~~~~------~g~~~~ki~vIpNgid~~~f~~~ 284 (475)
T cd03813 236 SLGRLAYQAADRITTLYEGNRERQIE------DGADPEKIRVIPNGIDPERFAPA 284 (475)
T ss_pred HHHHHHHHhCCEEEecCHHHHHHHHH------cCCCHHHeEEeCCCcCHHHcCCc
Confidence 24567888999999999987654 11 22355799999999999988765
No 77
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.81 E-value=9.8e-05 Score=82.82 Aligned_cols=205 Identities=16% Similarity=0.087 Sum_probs=101.3
Q ss_pred cCCcccCC-CHHHHHHHHHHHHHHC--CCeEEEEecCCCcccccccccc-cceeEEEeeecCCceeeeEEEEEeeCCeeE
Q 003536 521 MAPVAKVG-GLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDL-RALDVVVESYFDGRLFKNKVWVSTIEGLPV 596 (812)
Q Consensus 521 ~aP~aKvG-GLGdVV~~LsKALqkl--GheV~VItPkY~~i~~~~i~~L-~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~V 596 (812)
+.|..-.| |-..++-+..++|++. ||+|+|+|..+........... +-+.+. ..+++++
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~-----------------~~~~~~~ 68 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIE-----------------LDRPRIV 68 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCee-----------------cCCCceE
Confidence 46777777 8889999999999998 8999999988764221000000 001110 1123333
Q ss_pred EEe--C-CCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHc-CCCCCEEEEcC-cccchHHHHHHHHhccCCCCCCc
Q 003536 597 YFI--E-PHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSAR 671 (812)
Q Consensus 597 YfL--d-~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkkl-g~kPDIIH~HD-WhTA~Vapl~lk~y~~~gl~~iP 671 (812)
+.+ . ...+.+.+.|-.++ ..++. .+...++.. +..||||=+|- |..++ ++. +. +.++|
T Consensus 69 ~~~~~~~~~~~~~~~~r~~~~--------~~~~~-~~~~~~~~~~~~~pDv~i~~~g~~~~~--~~~-~~-----~~~~~ 131 (419)
T cd03806 69 FFLLKYRKLVEASTYPRFTLL--------GQALG-SMILGLEALLKLVPDIFIDTMGYPFTY--PLV-RL-----LGGCP 131 (419)
T ss_pred EEEecceeeeccccCCceeeH--------HHHHH-HHHHHHHHHHhcCCCEEEEcCCcccHH--HHH-HH-----hcCCe
Confidence 222 0 00011112221111 11111 222223333 56899987775 44322 222 22 24789
Q ss_pred EEEEecCCccCCCCChhhhh--hcCCC----cccccCCc--ccccCCCCCch-hHHHHHHHHcCcEEecCcchhhhhccC
Q 003536 672 VCFTCHNFEYQGTAPAKELA--SCGLD----VQQLNRPD--RMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEGGQG 742 (812)
Q Consensus 672 vVfTIHNleyqG~f~~~~L~--~~GLp----~e~f~~~D--~led~~~~~~v-NllK~AI~~AD~VITVSptyAeE~G~G 742 (812)
+|+-+|-+. .+.+++. .+|.. ...+.... .+-..-++..+ -+.+.++..||.|+++|.+.++.+
T Consensus 132 ~i~y~h~P~----~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~--- 204 (419)
T cd03806 132 VGAYVHYPT----ISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHI--- 204 (419)
T ss_pred EEEEecCCc----chHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHH---
Confidence 999999432 1112221 11110 00000000 00000000001 256778889999999999887761
Q ss_pred cccccccCCCCeEEEeCCCCCCCCCC
Q 003536 743 LHSTLNFHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 743 L~~lL~~~~eKI~gIpNGID~d~WnP 768 (812)
...+. ...++.+|+||+|++.|.|
T Consensus 205 -~~~~~-~~~~~~vi~~gvd~~~~~~ 228 (419)
T cd03806 205 -RSLWK-RNTKPSIVYPPCDVEELLK 228 (419)
T ss_pred -HHHhC-cCCCcEEEcCCCCHHHhcc
Confidence 11111 1248999999999887764
No 78
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=97.79 E-value=0.00039 Score=75.89 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~ 557 (812)
+.|||+++++.+ .||-...+..|+++|.++|++|+++++.+..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~ 45 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGE 45 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHh
Confidence 468999999864 3599999999999999999998888887753
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.70 E-value=0.00018 Score=79.33 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCCCCCCCCCCchhhhhccCcCCccchHHhHHHHHHHhCCCC
Q 003536 723 VFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSS 801 (812)
Q Consensus 723 ~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~tDk~L~~~Ys~ddl~gK~~nK~aLqk~lGL~~ 801 (812)
..+|+++++|+..+++ ...| .+.++|++++||||.+.+.|.. ++..+++++||+.
T Consensus 149 ~~~d~~~~~s~~~~~~l~~~g------~~~~ki~v~g~~v~~~f~~~~~------------------~~~~~r~~~gl~~ 204 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALKRG------LEPSQIRVYGLPIRPSFARAVR------------------PKDELRRELGMDE 204 (382)
T ss_pred CCCCEEEECCHHHHHHHHHcC------CCHHHEEEECcccCHhhccCCC------------------CHHHHHHHcCCCC
Confidence 3589999999988776 2223 3568899999999876544321 3345666777763
Q ss_pred CCCCCCEEEE
Q 003536 802 ADARKPLVKF 811 (812)
Q Consensus 802 ~d~d~PLVGf 811 (812)
+.|+|++
T Consensus 205 ---~~~~il~ 211 (382)
T PLN02605 205 ---DLPAVLL 211 (382)
T ss_pred ---CCcEEEE
Confidence 4566655
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.59 E-value=0.00038 Score=67.32 Aligned_cols=37 Identities=35% Similarity=0.620 Sum_probs=32.5
Q ss_pred EEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEe
Q 003536 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 514 IL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VIt 552 (812)
|++++..+.| ..||.+.++..|++.|.+.||+|+|+.
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 5778877776 369999999999999999999999987
No 81
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.41 E-value=0.067 Score=66.71 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=26.9
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 003536 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (812)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (812)
++..+..-|...+..+--+......+-..+..+-.+.+.+..++..++..+...
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~ 728 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556665555555554444444444444444444444444444444433
No 82
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.40 E-value=0.002 Score=77.17 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCC
Q 003536 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMP 442 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 442 (812)
..++..+|.+|.|-+-+ ||..-+.- .+-|+.|+.+|..+-+|..- +.+.|-=+.|
T Consensus 175 r~~~~~~~e~e~~~~~~--~~~~~~~~-~~~~~k~k~~~k~~~~~~~~-~~~~~~~~~~ 229 (794)
T PLN02501 175 RALKTRFRELEKRSESL--EIFGGFKN-SEFVEKLKSSLKAIYKEPQE-SKDVPPLDVP 229 (794)
T ss_pred HHHHHHHHHHHhhcchH--HHhcccch-HHHHHHHHHHHHhhhcCccc-cccCCCcchH
Confidence 35677888899886655 77766665 67788888888888776654 3344444443
No 83
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=97.36 E-value=0.00076 Score=77.03 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=57.1
Q ss_pred CCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHH
Q 003536 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 718 (812)
Q Consensus 639 ~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNll 718 (812)
...|+||+||+|-.++| .+++.. ..+.|++|.+|.+- |...+..| +|. + ..+
T Consensus 130 ~~~d~iwihDyhl~llp-~~lr~~----~~~~~i~~f~Hipf-----P~~e~~~~-lp~----------------~-~~l 181 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP-QMLRER----GPDARIGFFLHIPF-----PSSEIFRC-LPW----------------R-EEL 181 (460)
T ss_pred CCCCEEEEeChhhhHHH-HHHHhh----CCCCeEEEEEeCCC-----CChHHHhh-CCC----------------h-HHH
Confidence 36699999999999885 444432 24689999999762 22111110 110 0 122
Q ss_pred HHHHHHcCcEEecCcchhhhhc------cCcc----c--ccccCCCCeEEEeCCCCCCCCCCC
Q 003536 719 KGAIVFSNIVTTVSPSYAQEGG------QGLH----S--TLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 719 K~AI~~AD~VITVSptyAeE~G------~GL~----~--lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
..++..||.|..-++.|++-|- .+.. . .+..+..++.+||||||++.|.|.
T Consensus 182 l~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~ 244 (460)
T cd03788 182 LRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKL 244 (460)
T ss_pred HHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHH
Confidence 2344445555555555543300 0000 0 011234679999999999888764
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.36 E-value=0.023 Score=67.73 Aligned_cols=193 Identities=28% Similarity=0.403 Sum_probs=113.5
Q ss_pred HhhhhhhHHHhhhhchhhhhhHhhhhhh----hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 003536 170 ALQGEINALEMRLAETDARIRVAAQEKI----HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (812)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (812)
.|+++...+.-|..+.-..+..-..+|. +|.-||.+|.+|++.++.....+ .|.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-----------~pa----------- 76 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-----------PPA----------- 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-----------ccc-----------
Confidence 3455555555555555555544444443 46677778888888887653221 111
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (812)
..++.-..|..|=..|+..++.|..++......-+.+-.|-.| .+..|.+||.++..-++
T Consensus 77 -~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~E---qEerL~ELE~~le~~~e---------------- 136 (617)
T PF15070_consen 77 -GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQE---QEERLAELEEELERLQE---------------- 136 (617)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------------
Confidence 2233334566666667777888888887766666655555433 36667777766654333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH---HhHhh---hhhhchHHH------HHHHHHHHHHHHHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES---LDEAN---IYKLSSEKM------QQYNELMQQKMKLL 393 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~ 393 (812)
..+....||+...+--.-|.-.+.||.+|..++..|+.. |-..| .+++.++.- .+|+ .|++++..+
T Consensus 137 -~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-~l~~~l~~~ 214 (617)
T PF15070_consen 137 -QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-ELQEKLHNL 214 (617)
T ss_pred -HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 223344455443333233445689999999999999984 44444 455555422 1122 467777777
Q ss_pred HHHHhhchhhHHH
Q 003536 394 EERLQRSDEEIHS 406 (812)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (812)
++++...+.|+.+
T Consensus 215 ~e~le~K~qE~~~ 227 (617)
T PF15070_consen 215 KEKLELKSQEAQS 227 (617)
T ss_pred HHHHHhhhHHHHH
Confidence 7787777776655
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.074 Score=65.29 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH--HHhhhhhhHHHhhhhchhhhhh
Q 003536 157 ALEDLHKILQEK--EALQGEINALEMRLAETDARIR 190 (812)
Q Consensus 157 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 190 (812)
-+++++.-|.++ ..++..+..++.++++...++.
T Consensus 188 ~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 188 SLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 4556666666666666655555
No 86
>PRK02224 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.099 Score=64.22 Aligned_cols=119 Identities=19% Similarity=0.336 Sum_probs=61.8
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh------------------hhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD------------------ADERVVMLEMERSSLESSLKELESKLSI 306 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (812)
+-.+..+++.++++-..++.-+.+++..+..... ..+++..+......++..+.+||..+..
T Consensus 414 l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655666655555555544431 1133334444555555556666665555
Q ss_pred chhhhhccccc---hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 003536 307 SQEDVAKLSTL---KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (812)
Q Consensus 307 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (812)
....+..+..+ +-+-..+.++++.++.+++....+.+.+ ......|+.++.+|++.+
T Consensus 494 ~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~---~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK---RERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 55554443333 2333345566666666666544444433 233345556666655555
No 87
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.078 Score=68.33 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHH
Q 003536 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHE 212 (812)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (812)
++++-..+.....++-.++. -...+..+.++..|.+.++.+|.-|+..+..++.- ..++=+++++.++..+
T Consensus 767 le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--------~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--------RTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHH
Confidence 44444444444444444433 34445555666666667777777666666655431 1334455555555555
Q ss_pred hhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 003536 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS 292 (812)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (812)
+.. +..+++.+.++-..+++.|..|+.++.++.+....+..-...|..
T Consensus 838 l~~--------------------------------l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~ 885 (1311)
T TIGR00606 838 LDT--------------------------------VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885 (1311)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 233344444444445555555544444444443333333335555
Q ss_pred HHhhHHHHHhhhhcchhhhhc
Q 003536 293 LESSLKELESKLSISQEDVAK 313 (812)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ 313 (812)
|+..|.+|...+....+.+.+
T Consensus 886 le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555554444433
No 88
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.31 E-value=0.1 Score=64.84 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHh
Q 003536 353 QELRKKVDKLEESLDEA 369 (812)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (812)
.+|+.+++.|...+++-
T Consensus 968 ~~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 968 EEARRRLKRLENKIKEL 984 (1179)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45666666666655543
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.28 E-value=0.05 Score=63.09 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=38.6
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS 307 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (812)
..+-.+++.+..+...++..++.++.++.++. +.++.+..++.+.+.+++.+..++.-+...
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777777776663 334445556666666666666665554433
No 90
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.23 E-value=0.2 Score=62.32 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=34.5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhh
Q 003536 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDAR 188 (812)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (812)
..+.++-.=+...++-+.-+++....+-..+..+-.+.+.++.++..++..+.....+
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 727 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ 727 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666665555555556666666666666666666665554433
No 91
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.15 E-value=0.14 Score=63.91 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 003536 385 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (812)
.++.++..++.++.....-=..-+.-|....++|..
T Consensus 955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~ 990 (1164)
T TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE 990 (1164)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 455566666666665544222334455555544444
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.045 Score=67.22 Aligned_cols=244 Identities=25% Similarity=0.313 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcc
Q 003536 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (812)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (812)
.+|+++..+-.+.++.|.+++.+|..|+.+ -+.+.|++ .+..||+-..++|+.-.-.
T Consensus 674 ~~l~~l~~~~~~~~~~q~el~~le~eL~~l-----e~~~~kf~--~l~~ql~l~~~~l~l~~~r---------------- 730 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKELEALERELKSL-----EAQSQKFR--DLKQQLELKLHELALLEKR---------------- 730 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHH----------------
Confidence 455666666677788888888888888877 34455555 6788888888888763111
Q ss_pred cccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhh----hHHhhHHHHHhhhhcchhhh
Q 003536 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS----SLESSLKELESKLSISQEDV 311 (812)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 311 (812)
...+.-|-+..++..++++=-.+++.| |+..-.+++-++-+.+||+--. .=++.|+||+..+-.+-.-+
T Consensus 731 ----~~~~e~~~~~~~~~~~~e~v~e~~~~I---ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 731 ----LEQNEFHKLLDDLKELLEEVEESEQQI---KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred ----HhcChHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 112223444555555544432222222 2222334444445555554221 12334445544443322211
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh-hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHH
Q 003536 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL-QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (812)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (812)
.+...-|+|-++.-..|.--..+..+++..+ +|.+.+.++++.|++.+...-. ...+.+.-..-.|+++
T Consensus 804 -------e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~---kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 804 -------EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA---KVDKVEKDVKKAQAEL 873 (1174)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHH
Confidence 1222334444443333333333444444433 3456677788888887765432 2344455678899999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHH
Q 003536 391 KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF 445 (812)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~ 445 (812)
+....++..+|.+|...+...+.-..+.++ .+-+.++ +++-+..|+.+-
T Consensus 874 ~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~----~~l~~kk--le~e~~~~~~e~ 922 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGLLTSQEKCLSEKSD----GELERKK--LEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHhhc----ccchHHH--HHhHHHHhhhhH
Confidence 999999999999998876655554444444 3333333 555566666654
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=97.05 E-value=0.26 Score=60.44 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhh
Q 003536 409 QLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (812)
.-|+..+.+.+.-+..|+++-
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666644
No 94
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.95 E-value=0.013 Score=63.72 Aligned_cols=37 Identities=32% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
+|||++++.+ +||-= +..-++++|.+.|+++.+++..
T Consensus 1 ~~ki~i~~Gg------t~G~i-~~a~l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 1 PLRIAIVAGE------VSGDL-LGAGLIRALKARAPNLEFVGVG 37 (380)
T ss_pred CceEEEEecC------cCHHH-HHHHHHHHHHhcCCCcEEEEEc
Confidence 5788877654 34422 2334999999888888888643
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.94 E-value=0.16 Score=59.74 Aligned_cols=180 Identities=20% Similarity=0.284 Sum_probs=91.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh-------hHHHHH--Hhhhhh------HHhhHHHHHhhhhcchhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD-------ERVVML--EMERSS------LESSLKELESKLSISQEDV 311 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~ 311 (812)
.+.+|.+.|+.++..++..|..|...+..+.... .++..+ ++|... |...+.+++..+..++..-
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566666666666655555555555444433222 112112 222221 3333334444444444444
Q ss_pred hccccchhhhhhHHH-------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-hhhchHHHHHHH
Q 003536 312 AKLSTLKVECKDLYE-------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQYN 383 (812)
Q Consensus 312 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 383 (812)
.++..|+.++..+-+ +++-|..-|..|.+.-|+.+.-|-+ -|-+++.|...|.+|.. .|....+..+.-
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~---aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQ---ARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433 3444555566666666666554432 22334444444444432 122223333444
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 003536 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (812)
..+++-+..-+++++.-..|++..=+-|++.-.|=|..=-.|..++
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777778888888887777778777777665444444333
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.21 Score=64.53 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=88.0
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (812)
...++.+..|-..++..|+.|..++..... +..+..++.|...++..+..+..++...++...++ +.+...|.++.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~---~~eI~~Lq~ki 866 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ---QEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334456667777777888888887775544 44667777777777777777766666655544332 33333444444
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh--h--hhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003536 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--Y--KLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (812)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (812)
.++.....+..+ .+++-++|...++.|.+.+++... . +-..+.+++..+.++++...+..+.+..-++.
T Consensus 867 ~el~~~klkl~~-------~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 867 NELKSEKLQIGT-------NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333 445666666666666666654422 1 11222233333333333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003536 405 HSYVQLYQESVKEFQDTLHSL 425 (812)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~ 425 (812)
+..++.|+..+..++.....+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444443333
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.85 E-value=0.0028 Score=67.72 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 003536 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPAT 770 (812)
Q Consensus 717 llK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~t 770 (812)
+.+.++..+|.|+++|+..++.+ .. ....+..+|+||+|.+.|.|..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~----~~---~~~~~~~vi~~~~d~~~~~~~~ 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRI----KK---YYGRDATVIYPPVDTDRFTPAE 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHH----HH---HhCCCcEEECCCCCHhhcCcCC
Confidence 34567789999999999988761 11 1124578999999999988753
No 98
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.78 E-value=1.9 Score=55.31 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 003536 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARI 189 (812)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (812)
|..|..-|...+..+.-+-.....+-..+..+....+++..++..++.++.+.+..+
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333334444444444555555555555544444433
No 99
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.74 E-value=0.55 Score=50.85 Aligned_cols=207 Identities=23% Similarity=0.395 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccccc
Q 003536 161 LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL 240 (812)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (812)
++.+-.|+..|+.+++.+...+.+...++.-... ...-++.++.+||+++-..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~---~~~~le~el~~lrk~ld~~------------------------ 115 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELA---ERKDLEEELESLRKDLDEE------------------------ 115 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------------------------
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhh------------------------
Confidence 4445555555555555555555554444333222 2335678888888766542
Q ss_pred CCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh-hhhhhhHH---HHHH---hhhhhHHhhHHHHHhhhhcchhhhhc
Q 003536 241 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS-VKDADERV---VMLE---MERSSLESSLKELESKLSISQEDVAK 313 (812)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (812)
+..-..|..+-..|+++|.|+|..-.. +.+....+ ...+ .-...|.++|+++-..... .
T Consensus 116 --------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~------~ 181 (312)
T PF00038_consen 116 --------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEE------I 181 (312)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHH------H
T ss_pred --------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHH------H
Confidence 333344555555566666666543222 22222222 1111 1133477777776544421 1
Q ss_pred cccchhhhhhHHH-HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 003536 314 LSTLKVECKDLYE-KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (812)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (812)
+..-+.|+..||. |++.++.-... ..+.+-.+-....+++.+++.|+.-|.. ++.+...
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~---~~~~~~~~~~E~~~~r~~~~~l~~el~~-----------------l~~~~~~ 241 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEK---SSEELESAKEELKELRRQIQSLQAELES-----------------LRAKNAS 241 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred Hhhhhhhhhhhcccccccccccccc---cccccchhHhHHHHHHhhhhHhhhhhhc-----------------cccchhh
Confidence 1222334446654 56666655544 3333334455667777777777766543 3333334
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 003536 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 428 (812)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (812)
||.+++.........++-|+..|.....-|..++.+
T Consensus 242 Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 242 LERQLRELEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 444444444444444444444444444444444443
No 100
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=96.73 E-value=0.0025 Score=60.99 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCHHHHHH-------HHhcchhhhHHhhcCcHHHHHHHHHHHhhcCcchhHhhhh-hhhhhhhhHHhhhhccCCCCCCCC
Q 003536 441 MPWEFWSR-------LLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMEC-KEKNEHEAISTFLKLTSSSISSGL 512 (812)
Q Consensus 441 m~~~~~~~-------lLL~id~~~l~~~~~~~e~~~l~~~v~~~~~~~~d~y~~~-~~~~~~e~~~~~~~~~~~~~~~~M 512 (812)
+.++.|.+ +|.+|+...|+.++.++++...++.|+ ..|+.||+. .+|+++ +......
T Consensus 39 iDp~lW~~~~~NPv~~L~~vs~~rL~~la~D~~fl~~~~~v~----~~f~~Ym~~~~~W~~~-----------~~~~~~~ 103 (118)
T PF11897_consen 39 IDPELWEESGHNPVRLLQEVSQERLEELAQDPEFLARYDRVY----ARFEEYMSQKPTWFQE-----------PGDTPNP 103 (118)
T ss_pred hCHHHHHHcCCCHHHHHHHCCHHHHHHHhCCHHHHHHHHHHH----HHHHHHHcCCCccccC-----------CCCCCCC
Confidence 67788874 889999999999999999999999999 999999998 799875 2234578
Q ss_pred eEEEEeccc
Q 003536 513 HVIHIAAEM 521 (812)
Q Consensus 513 KIL~ISsE~ 521 (812)
.|+|+|+||
T Consensus 104 ~IAYFSmEf 112 (118)
T PF11897_consen 104 PIAYFSMEF 112 (118)
T ss_pred CEEEEcccc
Confidence 999999998
No 101
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.70 E-value=0.34 Score=59.90 Aligned_cols=186 Identities=24% Similarity=0.342 Sum_probs=121.5
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDL 324 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 324 (812)
--.+..||+-|..|-+.-++||.+|...-.-.+- +.+|+|--.|...+.+|++....-|.-..+| ++|+..-..|
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778999999999999999999877555554 8899999999999999998887766555543 4555444333
Q ss_pred ---HHHHHH-----------HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHH
Q 003536 325 ---YEKVEN-----------LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (812)
Q Consensus 325 ---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (812)
|+-..+ +|..-...|. +.|.-.+=+|+.+-.-+..+.++==|++|+|...-+ ..+..|--|+
T Consensus 342 ~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ralkllLEnrrlt~tleelqsss~Ee~~SK~lele--ke~KnLs~k~ 417 (1195)
T KOG4643|consen 342 DGQMELLQIFSENEELENESLQVENEQLTS--DRALKLLLENRRLTGTLEELQSSSYEELISKHLELE--KEHKNLSKKH 417 (1195)
T ss_pred hhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhHhHhHHH
Confidence 443333 3333333333 668888999999999999999988888888865421 1222222233
Q ss_pred HHHHHHHhhc--------------------------------------hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 003536 391 KLLEERLQRS--------------------------------------DEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 432 (812)
Q Consensus 391 ~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (812)
+.||+|+... .++..--+.+|.+-+++.-..+..+|+.++.
T Consensus 418 e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~- 496 (1195)
T KOG4643|consen 418 EILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKS- 496 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333332222 1222333556666667776767777777666
Q ss_pred ccCCCCCCC
Q 003536 433 AVHEPVDDM 441 (812)
Q Consensus 433 ~~~~~~~~m 441 (812)
++....+.
T Consensus 497 -L~~r~~el 504 (1195)
T KOG4643|consen 497 -LNNRDLEL 504 (1195)
T ss_pred -HHHHHHHH
Confidence 77766665
No 102
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.63 E-value=0.0054 Score=68.49 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=59.0
Q ss_pred CCCCCEEEEcCcc--cchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCch
Q 003536 638 GKQPDIIHCHDWQ--TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI 715 (812)
Q Consensus 638 g~kPDIIH~HDWh--TA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~v 715 (812)
..++||+|+| |. ++++...+.+.+ ...++|.|+|+....... .+ ....
T Consensus 125 ~~~~~v~~sy-~~~~~~~~~~~l~~~~-----~~~~~i~~~Hg~d~~~~~---------~~---------------~~~~ 174 (407)
T cd04946 125 DGQGTVFYSY-WLHETAYALALLKKEY-----LRKRVISRAHGYDLYEDR---------YP---------------SGYI 174 (407)
T ss_pred ccCceEEEEe-cCchHHHHHHHHHHhc-----CCceEEEEeccchhhhhh---------cc---------------ccch
Confidence 3577888887 53 344323333332 234599999986421100 00 0112
Q ss_pred hHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCC
Q 003536 716 NPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 716 NllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP 768 (812)
.+.+..+..+|.|++||+..++. +...++....++.+|+||+|...+.+
T Consensus 175 ~~~~~~~~~~d~ii~~S~~~~~~----l~~~~~~~~~ki~vi~~gv~~~~~~~ 223 (407)
T cd04946 175 PLRRYLLSSLDAVFPCSEQGRNY----LQKRYPAYKEKIKVSYLGVSDPGIIS 223 (407)
T ss_pred HHHHHHHhcCCEEEECCHHHHHH----HHHHCCCccccEEEEECCcccccccC
Confidence 34456678999999999998776 11223345678999999999876654
No 103
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=96.62 E-value=0.087 Score=58.80 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=50.8
Q ss_pred HHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCC
Q 003536 632 ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA 711 (812)
Q Consensus 632 elLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~ 711 (812)
++++. ++||+||+|+....+. ++.... ..++|+|++.|...... ...+. +
T Consensus 118 ~~l~~--~~Pd~v~~~~~~~~~~--~l~~~~----~~~ip~vl~~~~~~~~s---~~~~~-------------------~ 167 (425)
T PRK05749 118 RFLRF--WRPKLVIIMETELWPN--LIAELK----RRGIPLVLANARLSERS---FKRYQ-------------------K 167 (425)
T ss_pred HHHHh--hCCCEEEEEecchhHH--HHHHHH----HCCCCEEEEeccCChhh---HHHHH-------------------H
Confidence 44553 6999999995432211 211110 24899998766442110 00000 0
Q ss_pred CCchhHHHHHHHHcCcEEecCcchhhhh-ccCcccccccCCCCeEEEeCC
Q 003536 712 HDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNG 760 (812)
Q Consensus 712 ~~~vNllK~AI~~AD~VITVSptyAeE~-G~GL~~lL~~~~eKI~gIpNG 760 (812)
. -.+.+..+..+|.|+++|+..++.+ ..| .+.. +++|+|+
T Consensus 168 ~--~~~~r~~~~~~d~ii~~S~~~~~~l~~~g------~~~~-i~vi~n~ 208 (425)
T PRK05749 168 F--KRFYRLLFKNIDLVLAQSEEDAERFLALG------AKNE-VTVTGNL 208 (425)
T ss_pred H--HHHHHHHHHhCCEEEECCHHHHHHHHHcC------CCCC-cEecccc
Confidence 0 1245667778999999999988862 222 2345 8888884
No 104
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.61 E-value=0.016 Score=58.80 Aligned_cols=42 Identities=19% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCC
Q 003536 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 718 lK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~W 766 (812)
...++..||..++.+.+-+..|-. .-..||.+|+-|||++.+
T Consensus 129 ~l~~l~~~D~~isPT~wQ~~~fP~-------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 129 NLLALEQADAGISPTRWQRSQFPA-------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHHhCCcCcCCCHHHHHhCCH-------HHHcCcEEeecccchhhc
Confidence 456788899866655554443221 124799999999999765
No 105
>PRK03918 chromosome segregation protein; Provisional
Probab=96.56 E-value=1.4 Score=54.07 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=6.3
Q ss_pred CcEEEEecCC
Q 003536 670 ARVCFTCHNF 679 (812)
Q Consensus 670 iPvVfTIHNl 679 (812)
..+|++.|..
T Consensus 845 ~~iiiith~~ 854 (880)
T PRK03918 845 PQVIIVSHDE 854 (880)
T ss_pred CEEEEEECCH
Confidence 3467777754
No 106
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.40 E-value=0.42 Score=63.42 Aligned_cols=135 Identities=22% Similarity=0.363 Sum_probs=102.3
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 003536 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (812)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (812)
.--+....|+..|..|+..++||..+|..+-.-+.+-+...+- .|-.+|-.|+..|+..+..--.++-.+ .-..+
T Consensus 1762 ~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~--~Learir~LE~~l~~E~~~~~e~~k~~---rk~er 1836 (1930)
T KOG0161|consen 1762 KEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIA--KLEARIRELESELEGEQRRKAEAIKGL---RKKER 1836 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHHHHHhHhhhhhHHHhHHH---HHHHH
Confidence 3345567788888899999999999999988888777775553 678899999999999887766554433 34556
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 003536 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (812)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (812)
+|-.|+.-+++ .+..-+.+|...+.+++|++.+.-.+.+..++..++..-|...--+.++
T Consensus 1837 ~vkEl~~q~ee---d~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~ 1896 (1930)
T KOG0161|consen 1837 RVKELQFQVEE---DKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEE 1896 (1930)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655 4566778888999999999999999988888888876655554444443
No 107
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.35 E-value=4.3 Score=52.29 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=5.7
Q ss_pred CCCeEEEEecC
Q 003536 544 KGHLVEIVLPK 554 (812)
Q Consensus 544 lGheV~VItPk 554 (812)
-|.++.|--|.
T Consensus 1048 ~Giei~a~ppg 1058 (1163)
T COG1196 1048 AGIEISARPPG 1058 (1163)
T ss_pred cCcEEEEECCC
Confidence 46566555443
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.34 E-value=1.7 Score=57.96 Aligned_cols=115 Identities=32% Similarity=0.428 Sum_probs=69.3
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhH--------HHHHHhh---hhhHHhhHHHHHhhhhcchhhh
Q 003536 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER--------VVMLEME---RSSLESSLKELESKLSISQEDV 311 (812)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 311 (812)
+.+-.|.+|=..+.+-+..|.+|++..+.+....+..-.+ -..||+| |..++...+.||..+..+|+.+
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344666666667777777777777777776665544322 2334444 4458888899999998888888
Q ss_pred hccccch-----------hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 003536 312 AKLSTLK-----------VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (812)
Q Consensus 312 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (812)
..+...+ .|--.+..+++.++.++..+++++. +|+..++.|+++|+
T Consensus 1058 ~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~----------eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK----------ELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 7544332 2223344555556666555555443 44555555555554
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.29 E-value=2 Score=53.08 Aligned_cols=203 Identities=25% Similarity=0.372 Sum_probs=113.0
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 003536 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (812)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (812)
.+++=||-.||-|+.|+...|++- .. .-+-+|..|..-|..||+.+-.|+.-..+-
T Consensus 339 Er~deletdlEILKaEmeekG~~~-~~-----------------------~ss~qfkqlEqqN~rLKdalVrLRDlsA~e 394 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDG-QA-----------------------ASSYQFKQLEQQNARLKDALVRLRDLSASE 394 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-cc-----------------------cchHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445566666667777776665441 01 114567777777777777666665432221
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH-------HHh
Q 003536 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI-------SVL 349 (812)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 349 (812)
.--..++-||-.-+.+.+.+|++.- ..|..++++++..++....|+|-|. .+-
T Consensus 395 ---k~d~qK~~kelE~k~sE~~eL~r~k-----------------E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 395 ---KQDHQKLQKELEKKNSELEELRRQK-----------------ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 1123344444444445555544321 1578888888888888888888774 234
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh---------------hchhhHHH------HH
Q 003536 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ---------------RSDEEIHS------YV 408 (812)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~------~~ 408 (812)
+.|=.|.+||.-||+-.+.- |.+.+.+|.|++--+.+|--|+ +-++++.+ -|
T Consensus 455 dknlnlEekVklLeetv~dl-------Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI 527 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDL-------EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTI 527 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57888999999998876543 3444455555544433332222 12222222 12
Q ss_pred HHHHHHHHHHHHHHHhhHHh---hhhhccCCCCCCCCHHHHHHHHh
Q 003536 409 QLYQESVKEFQDTLHSLKEE---SKKRAVHEPVDDMPWEFWSRLLL 451 (812)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~m~~~~~~~lLL 451 (812)
--|++.|.-.|+-|..++.+ ++..+.++|--+ |..+=.++-+
T Consensus 528 ~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~-~et~dyk~~f 572 (1243)
T KOG0971|consen 528 KKFRELVAHLQDQLQELTDQQESSEEESQQPPSVD-PETFDYKIKF 572 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc-hhhhHHHHHH
Confidence 33566666666767666654 344456666433 5555444433
No 110
>PRK11637 AmiB activator; Provisional
Probab=96.28 E-value=0.41 Score=54.64 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=57.5
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHH
Q 003536 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKL 209 (812)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (812)
.-+|+++-.-|+..++.|--+....-.+...+..+-.+.+.++.+|+.++..+++++.+|.-..+ .+.-++++++.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~---eI~~~q~~l~~~ 122 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA---SIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34677777777777777777777777777777777777777788888887777777777765433 233455555555
Q ss_pred HHHhhhc
Q 003536 210 QHELTHR 216 (812)
Q Consensus 210 ~~~~~~~ 216 (812)
+..|..+
T Consensus 123 ~~~l~~r 129 (428)
T PRK11637 123 ERLLAAQ 129 (428)
T ss_pred HHHHHHH
Confidence 5555543
No 111
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=96.25 E-value=0.021 Score=62.19 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCCCEEEEc-CcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCccc
Q 003536 628 RAALELLLQAGKQPDIIHCH-DWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM 706 (812)
Q Consensus 628 rAaLelLkklg~kPDIIH~H-DWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~l 706 (812)
....+++++ .+||+||+| ||.+++++.+.... .++|++++-++....+.+. .
T Consensus 76 ~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~------~~ipv~h~~~g~~s~~~~~------------------~- 128 (365)
T TIGR00236 76 EGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFY------LQIPVGHVEAGLRTGDRYS------------------P- 128 (365)
T ss_pred HHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHH------hCCCEEEEeCCCCcCCCCC------------------C-
Confidence 344445554 589999999 68887875444332 4899986544331111000 0
Q ss_pred ccCCCCCchhHHHHHH-HHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCC-CC
Q 003536 707 QDNSAHDRINPLKGAI-VFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGI-DT 763 (812)
Q Consensus 707 ed~~~~~~vNllK~AI-~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGI-D~ 763 (812)
+.. ...+..+ ..||.++++|+..++. ...| .+..+|++|+||+ |.
T Consensus 129 ----~~~--~~~r~~~~~~ad~~~~~s~~~~~~l~~~G------~~~~~I~vign~~~d~ 176 (365)
T TIGR00236 129 ----MPE--EINRQLTGHIADLHFAPTEQAKDNLLREN------VKADSIFVTGNTVIDA 176 (365)
T ss_pred ----Ccc--HHHHHHHHHHHHhccCCCHHHHHHHHHcC------CCcccEEEeCChHHHH
Confidence 011 1113233 4689999999999887 2223 3567899999996 54
No 112
>PLN02949 transferase, transferring glycosyl groups
Probab=96.22 E-value=0.13 Score=59.34 Aligned_cols=43 Identities=21% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCCCeEEEEecccCCcccCC-CHHHHHHHHHHHHHHCCC--eEEEEecCC
Q 003536 509 SSGLHVIHIAAEMAPVAKVG-GLGDVVAGLGKALQKKGH--LVEIVLPKY 555 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvG-GLGdVV~~LsKALqklGh--eV~VItPkY 555 (812)
.++++|+++ .|....| |-..++-+...+|++.|+ .|.|+|..+
T Consensus 31 ~~~~~v~f~----HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~ 76 (463)
T PLN02949 31 SRKRAVGFF----HPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDH 76 (463)
T ss_pred CCCcEEEEE----CCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 345678776 5666555 888999999999999999 555555443
No 113
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.22 E-value=1.6 Score=51.76 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003536 403 EIHSYVQLYQESVKEFQ 419 (812)
Q Consensus 403 ~~~~~~~~~~~~~~~~~ 419 (812)
|.++.+++-|..-+.++
T Consensus 421 Elks~lrv~qkEKEql~ 437 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQ 437 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555544443333
No 114
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.20 E-value=0.77 Score=56.47 Aligned_cols=257 Identities=20% Similarity=0.316 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccc
Q 003536 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (812)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (812)
|.+.+..+-+|.|.++.++..|...+-++..+|.---+ ..+-..+++++|...|-..|.+-..+.. . .....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~---~l~~~~eei~kL~e~L~~~g~~~~~~~~----~-~~~~~ 183 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQ---TLDKADEEIEKLQEMLQSKGLSAEAEEE----D-NEALR 183 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCcccchhh----h-hHHHH
Confidence 34566667778888888888888888777766643333 2345567888888888666655311111 0 00111
Q ss_pred ccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----------hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 003536 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----------KDADERVVMLEMERSSLESSLKELESKLSI 306 (812)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (812)
........++.|-..+.....+++.++..+..-=+...+- -.-|..+..+||--..|+.-+.-|.+++..
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1112234455555556666667766655433211111111 112345555666555567777777777766
Q ss_pred chhhhh----ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHH
Q 003536 307 SQEDVA----KLSTLKVECKDLYEKVENLQGLLAKATKQADQA----ISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (812)
Q Consensus 307 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (812)
|.+|-. .+..-+-.++..=.|++.+..-|.+..-.-.-. -..-.++.|.|.-+|.|++||..+.- ..+.
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~---~~~~ 340 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ---EAEM 340 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 666533 334444455555555666666666543111111 12345888999999999999987643 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHHHHHHHHHHHHHh
Q 003536 379 MQQYNELMQQKMKLLEERLQR---SDEEIHSYVQLYQESVKEFQDTLHS 424 (812)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (812)
||.-+|.|+.++..-+..+.. +-..+..-...|+..|.+..|.++.
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~ 389 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDK 389 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776555444322 2233344444455555554444443
No 115
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=1.9 Score=54.59 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.7
Q ss_pred ccccccccCCCccccccchhHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 003536 115 KESLVLNCDGGEELSTSQLDNLIS------MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINA 177 (812)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (812)
|++.+.+.++.+-| -=|||+|| -|.--..-+..||.-|.+-...+.-+++||.+|.+-.|+
T Consensus 240 MKPk~~~e~d~GmL--EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~ 306 (1293)
T KOG0996|consen 240 MKPKAQTENDEGML--EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNE 306 (1293)
T ss_pred cCCCCCCCCcchHH--HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555544443333 24788887 467777778899999999999999999999999887665
No 116
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=95.93 E-value=0.009 Score=68.64 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++.+.. ..-|+|.+||.|=.++| .+++.. ....++.|..|.+ ||...+-.| +|
T Consensus 116 ~fA~~i~~~~----~~~d~vwvhDYhl~l~p-~~lr~~----~~~~~igfFlHip-----fP~~e~f~~-lp-------- 172 (456)
T TIGR02400 116 LFAEALAPLL----QPGDIVWVHDYHLMLLP-AMLREL----GVQNKIGFFLHIP-----FPSSEIYRT-LP-------- 172 (456)
T ss_pred HHHHHHHHhC----CCCCEEEEecchhhHHH-HHHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CC--------
Confidence 3555554433 24489999999999884 555542 2457899999965 333222111 11
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCccc-----ccccCCCCeEEEeCCCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLHS-----TLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~~-----lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
+. .-+..|+..||.|..-++.|++.|- .|++. ....+..++.+||||||++.|.|.
T Consensus 173 ------~r---~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~ 239 (456)
T TIGR02400 173 ------WR---RELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQ 239 (456)
T ss_pred ------cH---HHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHH
Confidence 11 2345688889999999888887610 11110 112355679999999999998764
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.91 E-value=0.94 Score=54.49 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 003536 266 IKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQE 309 (812)
Q Consensus 266 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (812)
+..+...+.++. ....++..+-++.+.++..|.+++.++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444555555 34566777888888888888888888887643
No 118
>PRK01156 chromosome segregation protein; Provisional
Probab=95.85 E-value=3 Score=51.86 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 003536 388 QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (812)
++++.++.++.....++..|..+|...+.++...++.++
T Consensus 594 ~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le 632 (895)
T PRK01156 594 KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLN 632 (895)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 366677777777777677666666555555554444443
No 119
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.85 E-value=2.3 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=11.7
Q ss_pred hhhhhHHhhHHHHHhhhhcchhh
Q 003536 288 MERSSLESSLKELESKLSISQED 310 (812)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (812)
.++..+...+.+++.++.....+
T Consensus 330 ~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444
No 120
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=95.75 E-value=0.74 Score=51.18 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCHHHHH---HHHHHHHHHCCCeEEEEecCCC
Q 003536 528 GGLGDVV---AGLGKALQKKGHLVEIVLPKYD 556 (812)
Q Consensus 528 GGLGdVV---~~LsKALqklGheV~VItPkY~ 556 (812)
||.|=|+ -.++++|.+.||+|.+++..++
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 6666654 4788899999999999986654
No 121
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.70 E-value=3.5 Score=43.68 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 003536 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (812)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (812)
.++..+-.+...-..+-..++++-.|-..|+++|..||..|..++.|+..+.+.=..++---++.+.-++.|-+
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555567777888888899999999999999999888887766333333333333334443333
No 122
>PHA01630 putative group 1 glycosyl transferase
Probab=95.69 E-value=0.013 Score=64.41 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=53.5
Q ss_pred cccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHHHHH-HHHcCc
Q 003536 649 WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGA-IVFSNI 727 (812)
Q Consensus 649 WhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNllK~A-I~~AD~ 727 (812)
.||.+..+.+|+... ..++|+|+|+|... + + . ..++... ...||.
T Consensus 52 ~~~~~~~~~~~~~~~---~~~~~~v~e~~~~~--~------l-----~------------------~~~~~~~~~~~ad~ 97 (331)
T PHA01630 52 YYTIFNSMLFWKGIP---HVGKNIVFEVADTD--A------I-----S------------------HTALYFFRNQPVDE 97 (331)
T ss_pred ehhhhhHHHHHhhcc---ccCCceEEEEEeec--h------h-----h------------------HHHHHHHhhccCCE
Confidence 567666566666421 14779999999721 0 0 0 0123334 467999
Q ss_pred EEecCcchhhhh-ccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 728 VTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 728 VITVSptyAeE~-G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
|+++|+..++.+ ..|+ . ...++++||||||++.|.|.
T Consensus 98 ii~~S~~~~~~l~~~g~----~-~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 98 IVVPSQWSKNAFYTSGL----K-IPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred EEECCHHHHHHHHHcCC----C-CCCCEEEECCCCCHHHcCCC
Confidence 999999988762 2221 1 13689999999999988765
No 123
>PHA01633 putative glycosyl transferase group 1
Probab=95.66 E-value=0.22 Score=55.49 Aligned_cols=38 Identities=13% Similarity=0.380 Sum_probs=31.6
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
||-+.+++-| ..+..|+.+++.-|...|.-|++++|.+
T Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (335)
T PHA01633 1 MKTAILTMNY------SSISNVSEDIAEVLRENGEIVTITKNPF 38 (335)
T ss_pred CceEEEEech------hhhhhHHHHHHHHHHhCCcEEEEecCCc
Confidence 6777777754 5678899999999999999999998765
No 124
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.65 E-value=4 Score=52.73 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=63.4
Q ss_pred cchhhHhhhhhhhhhhcc-hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 003536 245 IHSFSKELDSLKTENLSL-KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (812)
+.....+|+.+.+.-.-- +.||+.+...++...+-...+..++++...|.++..++|+++..-...+..- +.-.+..
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~--~~~~~~~ 399 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA--FNRQQER 399 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 334455666665544443 4479999999999999999999999999999999999999887754432211 1112223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHH
Q 003536 324 LYEKVENLQGLLAKATKQADQAI 346 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (812)
.-++...++.-.+....+.+.+.
T Consensus 400 ~~~~~~~~~e~~~~~~~~~~~~~ 422 (1201)
T PF12128_consen 400 LQAQQDEIREEKAERREQIEEEY 422 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455554444444444443
No 125
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.64 E-value=2.3 Score=50.57 Aligned_cols=156 Identities=18% Similarity=0.264 Sum_probs=95.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
.+...++.+++.|..|+..|+.+++.----.+-.+++..++++...+++.+++++.++...... .+.++.++..+-+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e 390 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILK 390 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 4577788889999999999999888744434446677788888888888888777665554443 4444444444444
Q ss_pred HHHHHHHHHHHHhhhhhhHHH----HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 003536 327 KVENLQGLLAKATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (812)
+++.+..-.....+.....-. .-.+=+.++.++..++..++..++..++..-+.. -...+.++..|..+|....=
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~-~~~~~~~i~~l~~~L~~g~V 469 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEM-FFEVSDEIEALAEELEEKPI 469 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 444443333322222211100 0122244566677777777788888876654443 34667888888888887443
Q ss_pred hHHH
Q 003536 403 EIHS 406 (812)
Q Consensus 403 ~~~~ 406 (812)
-|.+
T Consensus 470 Nm~a 473 (569)
T PRK04778 470 NMEA 473 (569)
T ss_pred CHHH
Confidence 3433
No 126
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.57 E-value=3.8 Score=49.49 Aligned_cols=242 Identities=24% Similarity=0.332 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhh-----hHh-hhHHHHHHHHHHhhhcccCc
Q 003536 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI-----HVE-LLEDQLQKLQHELTHRGVSE 220 (812)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 220 (812)
+..++|-=.+--+.+.+...||+.....|..||..|++...++.......- -+| =+.++++.|+.|+-
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE------ 97 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------ 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH------
Confidence 444555555667889999999999999999999999997666654432211 112 13333344444331
Q ss_pred ccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHH
Q 003536 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKE 299 (812)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 299 (812)
.|..++...-++|- .|+.. .+-++|+..||+.-..++....|
T Consensus 98 --------------------------~L~~qlqaqv~~ne-----------~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 98 --------------------------SLEEQLQAQVENNE-----------QLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred --------------------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222221 22222 35566777776666666666666
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh---hhHHHHhh-hhHHHHHHHHHHHHHHhHhh---hh
Q 003536 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA---DQAISVLQ-QNQELRKKVDKLEESLDEAN---IY 372 (812)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~ 372 (812)
..+-|...+.|-..+|-----=+.|-+.+..||.-+-+.||.- ..|.-.-+ .+.+|.+|+..|++.|.... -+
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665655555544444332223345566666666555555542 22221111 22345555555444333221 11
Q ss_pred hh------------chHHHHHHH----------HHHHHHH---HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 373 KL------------SSEKMQQYN----------ELMQQKM---KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 373 ~~------------~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
|- ...-||||. +-|+..+ ..+=+|||.-...+...+..-....++-+..|..+..
T Consensus 221 K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~q 300 (617)
T PF15070_consen 221 KSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQ 300 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 011344443 1222221 2334566655555555555555666666666666655
Q ss_pred hhhh
Q 003536 428 ESKK 431 (812)
Q Consensus 428 ~~~~ 431 (812)
++.-
T Consensus 301 qNqq 304 (617)
T PF15070_consen 301 QNQQ 304 (617)
T ss_pred hhHH
Confidence 5543
No 127
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=95.57 E-value=0.075 Score=57.20 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCcc-cchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcc
Q 003536 627 SRAALELLLQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR 705 (812)
Q Consensus 627 srAaLelLkklg~kPDIIH~HDWh-TA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~ 705 (812)
.....+.++. .+|||||+|++. +++++ .....+ .++|+|++.|+... +.. +. +
T Consensus 77 ~~~l~~~l~~--~~pDvV~~~g~~~~~~~~-~~aa~~-----~~iPvv~~~~g~~s---~~~------~~-------~-- 130 (363)
T cd03786 77 LIGLEAVLLE--EKPDLVLVLGDTNETLAA-ALAAFK-----LGIPVAHVEAGLRS---FDR------GM-------P-- 130 (363)
T ss_pred HHHHHHHHHH--hCCCEEEEeCCchHHHHH-HHHHHH-----cCCCEEEEeccccc---CCC------CC-------C--
Confidence 3444455554 489999999643 44442 332222 48999977665321 000 00 0
Q ss_pred cccCCCCCchhHHHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCC-CCC
Q 003536 706 MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGI-DTD 764 (812)
Q Consensus 706 led~~~~~~vNllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGI-D~d 764 (812)
.. . .-+.....||.++++|+..++. ..+| .+..+|++|+||+ |..
T Consensus 131 ------~~-~-~r~~~~~~ad~~~~~s~~~~~~l~~~G------~~~~kI~vign~v~d~~ 177 (363)
T cd03786 131 ------DE-E-NRHAIDKLSDLHFAPTEEARRNLLQEG------EPPERIFVVGNTMIDAL 177 (363)
T ss_pred ------ch-H-HHHHHHHHhhhccCCCHHHHHHHHHcC------CCcccEEEECchHHHHH
Confidence 00 0 1122446789999999988776 2333 3568899999985 543
No 128
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=0.94 Score=57.13 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=57.6
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHH------HHHHHHH-HHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhh
Q 003536 130 TSQLDNLISMIRNAEKNILLLNEA------RVQALED-LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (812)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (812)
..+|++...+.++...-.+-+++. |..-|+- +++...+-..+-..|+-|+.++++..+++...+-.+-++..+
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~ 863 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKEL 863 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 345666666666554444334433 3333443 666666667777788888888888888866666677777888
Q ss_pred HHHHHHHHHHhhh
Q 003536 203 EDQLQKLQHELTH 215 (812)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (812)
++++++++.|+-.
T Consensus 864 ~~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 864 EEQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887755
No 129
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.30 E-value=3.4 Score=49.87 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=18.7
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 003536 343 DQAISVLQQNQELRKKVDKLEESLDEAN 370 (812)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (812)
.++...+.+-..++.++|.++..|..+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444456666777777777777776654
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.26 E-value=1.3 Score=54.12 Aligned_cols=94 Identities=29% Similarity=0.351 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhh----hh
Q 003536 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----SV 276 (812)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 276 (812)
-||.++++||.||.+....|.. +...++ .+.. .=..+..||..+|.||..|.+-+..|....- ..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E-LRsqis--------~l~~--~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE-LRSQIS--------SLTN--NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHh--------hccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999887666532 221111 0111 1127788999999999999998887765543 34
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 003536 277 KDADERVVMLEMERSSLESSLKELESKLS 305 (812)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (812)
...+.++....+-|..+|+.|.+-.+.-.
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777888888888888765433
No 131
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=95.24 E-value=0.15 Score=57.05 Aligned_cols=88 Identities=9% Similarity=-0.048 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCccccc
Q 003536 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (812)
Q Consensus 629 AaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led 708 (812)
.+.+.+++ .+||+|.++|..++.+ .+.+. +. ..++|+|+-+ .++ .|+
T Consensus 80 ~~~~~l~~--~kPd~vi~~g~~~~~~-~~a~a--a~--~~gip~v~~i-~P~--------~wa----------------- 126 (385)
T TIGR00215 80 EVVQLAKQ--AKPDLLVGIDAPDFNL-TKELK--KK--DPGIKIIYYI-SPQ--------VWA----------------- 126 (385)
T ss_pred HHHHHHHh--cCCCEEEEeCCCCccH-HHHHH--Hh--hCCCCEEEEe-CCc--------Hhh-----------------
Confidence 44444553 5899999999755554 23211 11 2589998544 222 111
Q ss_pred CCCCCchhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCC
Q 003536 709 NSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGI 761 (812)
Q Consensus 709 ~~~~~~vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGI 761 (812)
|.+ +-.+...+++|.|.+++|...+.+ .....+...+.|++
T Consensus 127 --w~~--~~~r~l~~~~d~v~~~~~~e~~~~--------~~~g~~~~~vGnPv 167 (385)
T TIGR00215 127 --WRK--WRAKKIEKATDFLLAILPFEKAFY--------QKKNVPCRFVGHPL 167 (385)
T ss_pred --cCc--chHHHHHHHHhHhhccCCCcHHHH--------HhcCCCEEEECCch
Confidence 111 113556678999999999866541 11223556666766
No 132
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.19 E-value=1.6 Score=52.57 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhh------h------hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHH
Q 003536 318 KVECKDLYEKVENLQGLLAKATKQA------D------QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL 385 (812)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (812)
+....+|-++...+|+-+|.|.+-- . +--+..||--|||.++.+-|.++.. + -+-++-.++.
T Consensus 543 r~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar----r--Ed~~R~Ei~~ 616 (961)
T KOG4673|consen 543 RALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR----R--EDMFRGEIED 616 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHH
Confidence 3334456667777777776665511 1 1123445556666666666555443 2 3446667788
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 003536 386 MQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (812)
||+++...|-|-+.+-.+.-+--+-.-.-|+..|.||++-.
T Consensus 617 LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~ 657 (961)
T KOG4673|consen 617 LQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAA 657 (961)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhh
Confidence 88888888888777766666555555556888888887643
No 133
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.13 E-value=4 Score=54.14 Aligned_cols=176 Identities=21% Similarity=0.257 Sum_probs=100.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh---
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD--- 323 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 323 (812)
.++.++.+++.|+-.+..-+...-..+..+++ -+++++..+.++...-|+.+..-.+++.+|.-|+-+...
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQN------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665544443333333322 233444444444444444444444444444444443333
Q ss_pred ----------------------HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh--hhhchHHH
Q 003536 324 ----------------------LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--YKLSSEKM 379 (812)
Q Consensus 324 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 379 (812)
|-++=..|...+..+.+ +......||.-|+++|+.+-.-..+-|+ .+.....|
T Consensus 1075 e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL 1151 (1822)
T KOG4674|consen 1075 ELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---RIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDL 1151 (1822)
T ss_pred HHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHH
Confidence 44444444444444333 3456788999999999998776553233 33445567
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
+...-.|+.....++-++..+-.|-..+.+-|.-+=+..++..+.|..+.+.
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777877788888887777777666666655555555555555555444
No 134
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.02 E-value=9.9 Score=45.38 Aligned_cols=298 Identities=19% Similarity=0.284 Sum_probs=132.1
Q ss_pred ccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh
Q 003536 117 SLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (812)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (812)
...-|..+-..|++.+|.++-.+|-.||.++--.+=.+. +++.+++..+.+-| .+|..+...|.+- +..-.+-
T Consensus 65 ~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e---~~~~~i~~~l~~l---~~~e~~n 138 (569)
T PRK04778 65 KFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIE---EDIEQILEELQEL---LESEEKN 138 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHH
Confidence 344455566677888899999999999988765554332 23444444333332 2233222222222 1122233
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcc-----cccccCCcccchhhHhhhhhhhhhhcchhHHHHHH
Q 003536 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN-----EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 270 (812)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (812)
+..|+-+.+....+|+.|...+.+=|...+-...+=..+- -..+..+|-.-.-.+.+..|+++-..|+..|+.+-
T Consensus 139 r~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP 218 (569)
T PRK04778 139 REEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIP 218 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666677777766655443333221100000000 00011111112334445555555555555555443
Q ss_pred HHhhhhhhhh-hHHHHH-------Hhh-----hhhHHhhHHHHHhhhhcchhhhhccc--cchhhhhhHHHHHHHHHHHH
Q 003536 271 AELNSVKDAD-ERVVML-------EME-----RSSLESSLKELESKLSISQEDVAKLS--TLKVECKDLYEKVENLQGLL 335 (812)
Q Consensus 271 ~~~~~~~~~~-~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 335 (812)
.-+..++.+= ..+..| ..+ .-.+++.+..|..++..+-+.+..|. ..+.....+-++++.|-+.|
T Consensus 219 ~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 219 ELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDIL 298 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322211 222211 111 11255666666666655544443332 22222334444444444444
Q ss_pred HH---HhhhhhhHHHHh--------hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003536 336 AK---ATKQADQAISVL--------QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (812)
Q Consensus 336 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (812)
.+ |.+.+++....+ .+|++|...++.|..| |.++-..+.. ...++++++.+++++....+.+
T Consensus 299 ekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s------Y~l~~~e~~~-~~~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 299 EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS------YTLNESELES-VRQLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc------cccCchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 222222222211 2233333333333332 2232222222 2345666777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 003536 405 HSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
......|....+++.+....+.+
T Consensus 372 ~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 372 AEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 66655566555555554444433
No 135
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.94 E-value=0.73 Score=45.64 Aligned_cols=95 Identities=32% Similarity=0.509 Sum_probs=73.0
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhh---hhhHHHHhh-hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 003536 313 KLSTLKVECKDLYEKVENLQGLLAKATKQ---ADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (812)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (812)
|+..|+.|--+|.++++.++.-+..+..+ .++=|..|+ .|+.|...||++++.|.++.-.---+++..+-++-|+.
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 45677788888888888888776655433 344444444 57888888999999999888888888888888889999
Q ss_pred HHHHHHHHHhhchhhHHHH
Q 003536 389 KMKLLEERLQRSDEEIHSY 407 (812)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~ 407 (812)
+|.+||+.|..++.-...-
T Consensus 81 riq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKET 99 (143)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999998888766553
No 136
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.85 E-value=9.8 Score=50.77 Aligned_cols=262 Identities=21% Similarity=0.280 Sum_probs=128.9
Q ss_pred cccccchhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhh
Q 003536 127 ELSTSQLDNLISMIRNA----EKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (812)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (812)
..|..+.++++.|+.-. |-|+ .|+.-+-+-++.++.+..+.+.|+-++.-|+.+|.++++.+-. .
T Consensus 1208 a~s~~e~~~i~~~v~~vNll~EsN~-~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~----------~ 1276 (1822)
T KOG4674|consen 1208 AVSDDEHKEILEKVEEVNLLRESNK-VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQE----------K 1276 (1822)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH----------H
Confidence 35677888888887644 4444 4677777778888888888888888888888888888776643 3
Q ss_pred HHHHHHHHHHhhhcccCcccchhhhhc-CCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh-h
Q 003536 203 EDQLQKLQHELTHRGVSEHSELDVFAN-QNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA-D 280 (812)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 280 (812)
...+.+|++|...---- .-++-.. .+... .....|..++..|++|=....+-|+.++.++..++++ -
T Consensus 1277 ~ael~~l~~e~~~wK~R---~q~L~~k~k~~d~--------~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k 1345 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQR---NQDLLEKYKDSDK--------NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIK 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554443221000 0000000 01111 0112333344444444444444455555555555432 3
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH-HHHhhhhHHHHH--
Q 003536 281 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA-ISVLQQNQELRK-- 357 (812)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 357 (812)
+.+-.+..+++.+...+.+++..-..--+ +|-++-++-..+.+. ++-..+- -.+.+.++.+-.
T Consensus 1346 ~qld~l~~e~~~lt~~~~ql~~~~~rL~~-------------~~~e~~~q~~el~~~-~~~~~~~~e~t~rk~e~~~~k~ 1411 (1822)
T KOG4674|consen 1346 KQLDELNNEKANLTKELEQLEDLKTRLAA-------------ALSEKNAQELELSDK-KKAHELMQEDTSRKLEKLKEKL 1411 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776654322111 122222221111111 1111110 012222222222
Q ss_pred ----HHHHHHHHHhHh-hhh---hhchHHHHHHHHHHHHHHHHHHH-HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 358 ----KVDKLEESLDEA-NIY---KLSSEKMQQYNELMQQKMKLLEE-RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 358 ----~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
.+.+|.+.|+++ .+- .-.+++++.. +..-.|..+. +.++-+++|+.-.+.|+..+..-++....+-.
T Consensus 1412 ~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e---~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~ 1487 (1822)
T KOG4674|consen 1412 ELSEELESLKEELEELQQLQATLQSETEAITKE---LFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEG 1487 (1822)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 233444555443 121 2223333332 2223333333 66777778888778887777776665544433
No 137
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.82 E-value=7.3 Score=49.86 Aligned_cols=110 Identities=25% Similarity=0.351 Sum_probs=67.6
Q ss_pred hHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-HHHHHHHHHHHHHhHhhhhhh
Q 003536 296 SLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-ELRKKVDKLEESLDEANIYKL 374 (812)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (812)
..+++|.++...|+.-.+|+.....-.+.-++.-..+.-+...-+-++.-+..|+..+ .+....-|+++ |++++....
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~ 660 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI 660 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence 4457888888888888888877776555566666666555555555666666665443 34445566666 777776665
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 003536 375 SSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (812)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (812)
+.-.....-..+.-++|.++.+++.-..|-+.
T Consensus 661 ~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~ 692 (1317)
T KOG0612|consen 661 SDSEKEALEIKLERKLKMLQNELEQENAEHHR 692 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322233345556666666666666555554
No 138
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.76 E-value=16 Score=47.42 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=30.1
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 003536 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (812)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (812)
.++..+......+|+++-..|...-.+-..+.....+.+..+.++.-|....
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555666666777777776666665555555555555554444444444433
No 139
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.63 E-value=8.3 Score=51.07 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=40.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
....++.+.|+.+-+-..++++..+..+....+++.. -....+.|+..+..+..+..+
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~----lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSV----AQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 3456777888877777777777777777666555544 355667777777777766665
No 140
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.58 E-value=4.7 Score=48.04 Aligned_cols=293 Identities=20% Similarity=0.302 Sum_probs=147.6
Q ss_pred ccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh
Q 003536 117 SLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (812)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (812)
...-|...-..|.+.++.++-.++-.||..+--.+=.+. +++.+++..+.+- ..+|+.+...|.+- +....+-
T Consensus 61 ~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~---e~~i~~i~~~l~~L---~~~e~~n 134 (560)
T PF06160_consen 61 KFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEI---EEDIKEILDELDEL---LESEEKN 134 (560)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHH
Confidence 344455666778889999999999999998766554433 3444444444433 33444444444333 2334444
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccccc-------------CCcccchhhHhhhhhhhhhhcc
Q 003536 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL-------------NNSEIHSFSKELDSLKTENLSL 262 (812)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 262 (812)
+..++-+.+....+|+.|...+.+=|...+ .++..+. .+|-.-.-.+.+..|+++-..|
T Consensus 135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~--------~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 135 REEIEELKEKYRELRKELLAHSFSYGPAIE--------ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhHH--------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 556667788888888888776555333332 2211111 1111112233344444444444
Q ss_pred hhHHHHHHHHhhhhhh-hhhHHHHH-------Hhhh-----hhHHhhHHHHHhhhhcchhhhhccccchhh--hhhHHHH
Q 003536 263 KNDIKVLKAELNSVKD-ADERVVML-------EMER-----SSLESSLKELESKLSISQEDVAKLSTLKVE--CKDLYEK 327 (812)
Q Consensus 263 ~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 327 (812)
+..|+.+-.-+..+.. -...+..| .++. -.++..+.+++.++..+-..+..|..=.++ -..+-++
T Consensus 207 ~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~ 286 (560)
T PF06160_consen 207 EEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEER 286 (560)
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444443333332221 11111111 1110 114555666666665555555444322221 2233444
Q ss_pred HHHHHHHHHH---HhhhhhhHHH--------HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 003536 328 VENLQGLLAK---ATKQADQAIS--------VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (812)
Q Consensus 328 ~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (812)
++.|-+.|.+ |.+.+++-.. +-.+|+.|...++.+..| |.++-..+..+ ..++.+++.++.+
T Consensus 287 Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s------Y~L~~~e~~~~-~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 287 IDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS------YTLNHNELEIV-RELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCchHHHHH-HHHHHHHHHHHHH
Confidence 4444444443 2222222221 123344444444444433 55655555555 3455777778888
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 003536 397 LQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (812)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (812)
+......|...-..|.....+++..+..|..-.+
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~ 393 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE 393 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777777666666665555554433
No 141
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.48 E-value=0.01 Score=71.58 Aligned_cols=203 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh-hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 003536 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQE-KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (812)
.+.....|++.|+.+...|..+++.++....-+.+. .....-+..+++.||.|+-...... .
T Consensus 201 ~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~---~-------------- 263 (713)
T PF05622_consen 201 QISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR---D-------------- 263 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------
Confidence 344566789999999999999988877333222221 1112234677788888776542210 0
Q ss_pred ccCCcccchhhHhhhhhhhhhhcch---hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 003536 239 VLNNSEIHSFSKELDSLKTENLSLK---NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (812)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (812)
.....+-.+-.++..|+.+|..|. .....||.+++...+.-+++.+||.+-......|.|++. =-.++.
T Consensus 264 -d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~-------lk~qvk 335 (713)
T PF05622_consen 264 -DLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLED-------LKRQVK 335 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 001122345678888999998777 567789999999999999999999988888877777643 223456
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 003536 316 TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 395 (812)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (812)
.|+.+++.+-+...-|..-|.++.. .-.+...++++|..|+..+.+.. ...+++..-+..|+++++.++.
T Consensus 336 ~Lee~N~~l~e~~~~LEeel~~~~~-------~~~qle~~k~qi~eLe~~l~~~~---~~~~~l~~e~~~L~ek~~~l~~ 405 (713)
T PF05622_consen 336 ELEEDNAVLLETKAMLEEELKKARA-------LKSQLEEYKKQIQELEQKLSEES---RRADKLEFENKQLEEKLEALEE 405 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777766543 33455667777777776665532 2333444455566677666654
Q ss_pred HH
Q 003536 396 RL 397 (812)
Q Consensus 396 ~~ 397 (812)
.-
T Consensus 406 ek 407 (713)
T PF05622_consen 406 EK 407 (713)
T ss_dssp --
T ss_pred HH
Confidence 43
No 142
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.47 E-value=18 Score=45.18 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=73.2
Q ss_pred HHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchh
Q 003536 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSF 248 (812)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (812)
+.+++.++.|+|-+++.. -.+|+ .-++-|+||+|+++....-+.... +.
T Consensus 361 ~q~~~ql~~le~~~~e~q----~~~qe------~~~e~eqLr~elaql~a~r~q~ek---------------------a~ 409 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQ----REAQE------NREEQEQLRNELAQLLASRTQLEK---------------------AQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 445666677777766642 22222 223445999999987444221111 00
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (812)
.. ...+...+.-.++-++.+|.++. .|..|...|-.+..+.-.++.+++.++-+++-..- +|=+.|
T Consensus 410 ~~-~ee~e~~~l~~e~ry~klkek~t----------~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~---~L~d~l 475 (980)
T KOG0980|consen 410 VL-VEEAENKALAAENRYEKLKEKYT----------ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT---NLNDQL 475 (980)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHH
Confidence 00 33444455556666777776554 46677888888899999999999888774433333 356666
Q ss_pred HHHHHHHHH
Q 003536 329 ENLQGLLAK 337 (812)
Q Consensus 329 ~~~~~~~~~ 337 (812)
|.++...+.
T Consensus 476 e~~~~~~~~ 484 (980)
T KOG0980|consen 476 EELQRAAGR 484 (980)
T ss_pred HHHHHHHHH
Confidence 666655544
No 143
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.45 E-value=5.9 Score=49.61 Aligned_cols=205 Identities=24% Similarity=0.269 Sum_probs=97.7
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhc----------h-hhhhhHhhhhhh
Q 003536 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAE----------T-DARIRVAAQEKI 197 (812)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~ 197 (812)
+..+|.+|-.-+.-++++|--.+|-=-+-+.+++++-+...+...++..|..-+.- | .+..+.--.-+.
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777776655555555554444333333333332221111 1 111111222233
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 003536 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (812)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (812)
+..-++++.+-+.+||.+.-.++-...+ -+.+-+-+..|..++.+|..+.+|-+- |+..|+.|..--
T Consensus 756 ~l~~~~~~~~~~e~el~sel~sqLt~ee---------~e~l~kLn~eI~~l~~kl~~~~~er~~----~~~rk~~le~~l 822 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGSELFSQLTPEE---------LERLSKLNKEINKLSVKLRALREERID----IETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHhHHHHHhHHHHhhcCHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445666666677776664333222211 111123355667777777777777654 333333332211
Q ss_pred --hhhhHHHHHHhh---------hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH
Q 003536 278 --DADERVVMLEME---------RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI 346 (812)
Q Consensus 278 --~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (812)
+-..|+--|+-| |+.|+..=.+|++-...-++-+++|++|+..-...-...-+++..|++|.+....-.
T Consensus 823 ~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~ 902 (1200)
T KOG0964|consen 823 NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKK 902 (1200)
T ss_pred HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222223322 223344444444444444555666666665544444445555566666655554433
No 144
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.0083 Score=68.32 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCC-----CCCh-hhhhhcCCCcccccCCcccccCCCCCc
Q 003536 641 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQG-----TAPA-KELASCGLDVQQLNRPDRMQDNSAHDR 714 (812)
Q Consensus 641 PDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG-----~f~~-~~L~~~GLp~e~f~~~D~led~~~~~~ 714 (812)
.=|-|.|+|++|..-++. +. ....+.+|||.|..--.+ .+.. ..+....++.+. + .-..|++
T Consensus 175 ~vVahFHEW~AGVgL~l~-R~----rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EA-----G--kr~IYHr 242 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVGLILC-RA----RRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEA-----G--KRQIYHR 242 (692)
T ss_pred HHHHHHHHHHhccchhee-hh----cccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhh-----c--cchhHHH
Confidence 346799999998862222 21 124677999999763221 1110 111122222211 0 0014667
Q ss_pred hhHHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCC
Q 003536 715 INPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 715 vNllK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP 768 (812)
.-++++|...|+..+|||...+-|. +.+|.. .+=.+-|||.+...|..
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EA----eHlLkR--KPD~itPNGLNV~KFsA 290 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEA----EHLLKR--KPDVITPNGLNVKKFSA 290 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHH----HHHHhc--CCCeeCCCCcceeehhH
Confidence 7899999999999999999988761 234433 45568899999887754
No 145
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.44 E-value=3.5 Score=51.00 Aligned_cols=163 Identities=25% Similarity=0.380 Sum_probs=97.0
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (812)
|.-|-..|.....++-.|..|+++|..+|..-. .-...+-.++.|.+.+..-|.+|-..+-+....|.
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~-------- 395 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN-------- 395 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334455555556666667777777777765532 23456666777777777777777666655554443
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003536 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (812)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (812)
.|..|+|+|+..|..=.++.+.+-.-|..+. =.-+.|.+-+.|++|...+ +.++.++..+ | ..+
T Consensus 396 --~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~-d~~~~~~~~~~lEea~~ek----------er~~e~l~e~--r-~~~ 459 (775)
T PF10174_consen 396 --VLQKKIENLEEQLREKDRQLDEEKERLSSQA-DSSNEDEALETLEEALREK----------ERLQERLEEQ--R-ERA 459 (775)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHH----------HHHHHHHHHH--H-HHH
Confidence 4677888888888655555555544444322 2234455666666666544 2334443322 2 344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 401 DEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
..+-...+..|+..+++....++.|-.+-.-
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsE 490 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKELSE 490 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5566666777787777777777777655333
No 146
>PF15294 Leu_zip: Leucine zipper
Probab=94.29 E-value=5.4 Score=43.85 Aligned_cols=87 Identities=33% Similarity=0.357 Sum_probs=58.4
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 003536 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (812)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (812)
+..--|.+|.+.|++||..||+-+..+-.+-.. .=+|++-|++.|++|.. ....+.+-..+..-..+-.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLS 193 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHhhhccccccccccchh
Confidence 444568899999999999999988877654433 34578889999999988 3333333333333334444
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 003536 323 DLYEKVENLQGLLAKATK 340 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (812)
+|-.+++.+..-+.++..
T Consensus 194 dLE~k~a~lK~e~ek~~~ 211 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQ 211 (278)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777777766666543
No 147
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.27 E-value=13 Score=46.63 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=65.2
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 003536 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (812)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (812)
.+..+..++..+..+..-.+++....+|...+...+...-..+...++...+++.+...+..+-++.+.|+..+..+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 351 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666555555555666666677777777777777777777777666555
Q ss_pred hhhHHHHhhhhHH-HHHHHHHHHHHHh
Q 003536 342 ADQAISVLQQNQE-LRKKVDKLEESLD 367 (812)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (812)
..+....++.... ++.+.+.++..+.
T Consensus 352 ~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 352 KNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444 5555566665554
No 148
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.22 E-value=10 Score=46.76 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=50.9
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 003536 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (812)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (812)
.||.+||.-|..++..|.|+.-+|.-.. -+.+-+|++|-+-++++-..+.. +-..+..+
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~---srlh~le~eLsAk~~eIf~~~~~------------------L~nk~~~l 178 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLN---SRLHKLEDELSAKAHDIFMIGED------------------LHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHHHH------------------HhhhhhHH
Confidence 4556666666666555555544433221 12334445555555555443322 22334567
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhh
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELN 274 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (812)
.++-++|.++-+||..+++.++.+-.++.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888776555443
No 149
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.20 E-value=0.46 Score=57.79 Aligned_cols=161 Identities=24% Similarity=0.337 Sum_probs=63.2
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh-----------hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----h
Q 003536 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD-----------ADERVVMLEMERSSLESSLKELESKLSIS----Q 308 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 308 (812)
.+..+..++...+.-+..+-..++.++.....-.. -...+..|++|...|+..+..||.++... .
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~ 541 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGE 541 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34556667777777677777777877777654322 23467778888888888888888888651 1
Q ss_pred hhhhccccc--hhhhhhHHH--HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh-h-hhhhchHHHHHH
Q 003536 309 EDVAKLSTL--KVECKDLYE--KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA-N-IYKLSSEKMQQY 382 (812)
Q Consensus 309 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 382 (812)
-+.++..-| +.-=..-|+ |-..|.. .=..|++|+.++..|++--... . +..-+..-.++.
T Consensus 542 ~~~~~trVL~lr~NP~~~~~~~k~~~l~~--------------L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e 607 (722)
T PF05557_consen 542 FNPSKTRVLHLRDNPTSKAEQIKKSTLEA--------------LQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKE 607 (722)
T ss_dssp -BTTTEEEEEESS-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTTT----------------HH
T ss_pred cCCCCceeeeeCCCcHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHH
Confidence 122222212 111111122 2222222 2235778888887665432111 1 111112222223
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003536 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSL 425 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (812)
...|+.++..+|-|.+ -.-++|...+.+|.+....|
T Consensus 608 ~~~l~~~~~~~ekr~~-------RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 608 IAELKAELASAEKRNQ-------RLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665554 46678889999998754433
No 150
>PRK09039 hypothetical protein; Validated
Probab=94.10 E-value=1 Score=50.53 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=23.9
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH
Q 003536 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK 298 (812)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (812)
|++-|..=+..+..|...|..++.++. .++.+|+-|++.+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----------~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----------AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 455555545556666666666666555 55666666555544
No 151
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.04 E-value=17 Score=43.16 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=35.0
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 003536 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINAL 178 (812)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (812)
||.-+-.=+..+.+-+-..-..|.+||.+|+..-.-.+.|..+|+..
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555667777777778899999999988877777777776643
No 152
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=93.98 E-value=0.12 Score=55.60 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=57.1
Q ss_pred CCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhHH
Q 003536 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 718 (812)
Q Consensus 639 ~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNll 718 (812)
.++|||++|--+.... +++ .. ....+.|+++|+..+....... ..+ +.......
T Consensus 98 ~~~diii~~~~~~~~~-~~~-~~-----~~~~~~i~~~h~~~~~~~~~~~-----~~~--------------~~~~~~~~ 151 (372)
T cd04949 98 TKPDVFILDRPTLDGQ-ALL-NM-----KKAAKVVVVLHSNHVSDNNDPV-----HSL--------------INNFYEYV 151 (372)
T ss_pred CCCCEEEECCccccch-hHH-hc-----cCCceEEEEEChHHhCCccccc-----ccc--------------cchhhHHH
Confidence 6899999997554443 222 21 1356789999976432211000 000 01111122
Q ss_pred HHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 719 KGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 719 K~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
...+..+|.|+++|+..++. +...+. ...++.+||||++...+.|.
T Consensus 152 ~~~~~~~d~ii~~s~~~~~~----l~~~~~-~~~~v~~ip~g~~~~~~~~~ 197 (372)
T cd04949 152 FENLDKVDGVIVATEQQKQD----LQKQFG-NYNPIYTIPVGSIDPLKLPA 197 (372)
T ss_pred HhChhhCCEEEEccHHHHHH----HHHHhC-CCCceEEEcccccChhhccc
Confidence 23456789999999987765 111111 12348999999999887763
No 153
>PRK11637 AmiB activator; Provisional
Probab=93.91 E-value=4 Score=46.71 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhcc
Q 003536 203 EDQLQKLQHELTHRG 217 (812)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (812)
.+++.++-..+...|
T Consensus 123 ~~~l~~rlra~Y~~g 137 (428)
T PRK11637 123 ERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444433
No 154
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.91 E-value=20 Score=45.45 Aligned_cols=114 Identities=22% Similarity=0.218 Sum_probs=60.7
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHHHhHh------hhhhhc
Q 003536 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEA------NIYKLS 375 (812)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 375 (812)
...+-++|...|+-|-|.|--|+|-|+.=+...++|- +-+-...-.+..|++.++-...++.+- .--.++
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 4556677777777777777777777665444433221 122223334444555555555554443 111111
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 003536 376 SE--KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (812)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (812)
.. -.++++++. +++|-+-.+|+.++-|+......+...-+.+|.
T Consensus 475 ~~~Q~~~et~el~-~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt 520 (1195)
T KOG4643|consen 475 LQDQLEAETEELL-NQIKNLNKSLNNRDLELSRLHALKNELKEQYKT 520 (1195)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123344443 348888888888888877655555444443333
No 155
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=93.88 E-value=0.29 Score=54.60 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=28.8
Q ss_pred CCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCC---eEEEE
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH---LVEIV 551 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGh---eV~VI 551 (812)
.+|||+.+++.+ .||--.++..|.+++.+.|. +|.++
T Consensus 4 ~~~~vlil~~~~-----G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 4 QNKKILIITGSF-----GNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CCceEEEEECCC-----CchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 358999999753 46888999999999998864 45543
No 156
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.80 E-value=0.017 Score=69.79 Aligned_cols=162 Identities=25% Similarity=0.369 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc------chhhh-hccccchhhhhhHHHHHHHHHHH
Q 003536 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI------SQEDV-AKLSTLKVECKDLYEKVENLQGL 334 (812)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 334 (812)
||+....|+.+|.......+.+..++-|+..|+..++..++-+.. +++|| ..|..|+.++-.+-++.-.++.-
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~ 365 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSE 365 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333344444444444444444555555555555555554442222 23343 46888899988888888888776
Q ss_pred HHHHhhhhhhHHHHhh-hhHHHHHHHHHHHHHHhHhhhhhhchHH----HHHHHHHHHHHHHHHHHHHhhchhh------
Q 003536 335 LAKATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEK----MQQYNELMQQKMKLLEERLQRSDEE------ 403 (812)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------ 403 (812)
+....... .-|+ ....+..++.+++.++....--.-..++ +.+..+.|++.++.++.-.......
T Consensus 366 ~~~l~~~~----~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 366 LRELEEEI----QELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 65533332 2222 2244566666666665544332222222 2345677777788776654443332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 404 ---IHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
+...++.|+....+.+..|..+.+
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~~ 468 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELEE 468 (722)
T ss_dssp ---------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777766555554444443
No 157
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=93.79 E-value=0.26 Score=54.35 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=59.0
Q ss_pred cCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchh
Q 003536 637 AGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN 716 (812)
Q Consensus 637 lg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vN 716 (812)
.+....|++.+.-.+..+ ... ..+.++|+.+|..-. . ++ +.+. ....
T Consensus 99 ~~~~~~i~~~~~P~~~~~----~~~-----~~~~~~Vyd~~D~~~-~-~~-------~~~~---------------~~~~ 145 (373)
T cd04950 99 LGFGRPILWYYTPYTLPV----AAL-----LQASLVVYDCVDDLS-A-FP-------GGPP---------------ELLE 145 (373)
T ss_pred cCCCCcEEEEeCccHHHH----Hhh-----cCCCeEEEEcccchh-c-cC-------CCCH---------------HHHH
Confidence 467778888874222221 121 246889999886421 1 10 1110 0114
Q ss_pred HHHHHHHHcCcEEecCcchhhhhccCcccccccCCCCeEEEeCCCCCCCCCCC
Q 003536 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 717 llK~AI~~AD~VITVSptyAeE~G~GL~~lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
+++..+..||.|+|+|+...+.. .....++++|+||+|++.|.|.
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~--------~~~~~~i~~i~ngvd~~~f~~~ 190 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAK--------RRLNPNVVLVPNGVDYEHFAAA 190 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHH--------hhCCCCEEEcccccCHHHhhcc
Confidence 57888999999999999988651 1122689999999999988764
No 158
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.76 E-value=7.5 Score=49.51 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=19.2
Q ss_pred hhhhHhhhhhhhHhh--hHHHHHHHHHHhhhc
Q 003536 187 ARIRVAAQEKIHVEL--LEDQLQKLQHELTHR 216 (812)
Q Consensus 187 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (812)
..|+--|++-...+| --+|++.|..++..+
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345555555555444 357888888888765
No 159
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.72 E-value=0.12 Score=60.09 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=55.9
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCCchhH
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~~vNl 717 (812)
..++||||++--.-... +++ .. ..++|+|+++|+..+....... ... + |...+..
T Consensus 209 ~~~~di~i~dr~~~~~~-~~~-~~-----~~~~~~v~~lH~~h~~~~~~~~---------~~~-----~----~~~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQ-AVL-EN-----KGPAKLGVVVHAEHFSESATNE---------TYI-----L----WNNYYEY 263 (500)
T ss_pred CCCCCEEEEcCCcccch-HHH-hc-----CCCceEEEEEChhhhcCccCcc---------hhH-----H----HHHHHHH
Confidence 45899999975332221 222 21 1479999999986543221000 000 0 0011111
Q ss_pred HHHHHHHcCcEEecCcchhhh----hccCcccccccCCCCeEEEeCCCCCCCCCC
Q 003536 718 LKGAIVFSNIVTTVSPSYAQE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 718 lK~AI~~AD~VITVSptyAeE----~G~GL~~lL~~~~eKI~gIpNGID~d~WnP 768 (812)
....+..+|.||++|+..++. ++. ......++.+||||++.....|
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~l~~~~~~-----~~~~~~ki~viP~g~~~~~~~~ 313 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQILKNQFKK-----YYNIEPRIYTIPVGSLDELQYP 313 (500)
T ss_pred HHhchhhCCEEEECCHHHHHHHHHHhhh-----hcCCCCcEEEEcCCCcccccCc
Confidence 123456789999999987665 110 1123578999999998655544
No 160
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.71 E-value=5.1 Score=39.79 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-hhhchHHHHHH---HHHHHHHHHHHHHHHhhch
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQY---NELMQQKMKLLEERLQRSD 401 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 401 (812)
..|+.++.-|..+...++.+--..+.+..|.++|.-||+.|+++.- -+...+++++. .+-+-.+|+.||.+.....
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4455555555555555666655566667889999999998887742 22333444322 2334445555555444433
No 161
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.70 E-value=0.018 Score=69.50 Aligned_cols=181 Identities=20% Similarity=0.377 Sum_probs=0.0
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (812)
.|.+..++..|.+|+..|......|+..++... ...+....+.++.+.|.+.++.|...+....+ .+..++.+|..
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~---~~~d~~~~~e~ 271 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE---QRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345666677777777777777777777766544 22223334445555555555555554432111 01112222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhh----------HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 003536 324 LYEKVENLQGLLAKATKQADQAISVLQQN----------QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (812)
+-..+..|+.-.+..+..|+.|-..=++- .-|...|.+.+.-|++..-||-.-..|+.-|..+.++...|
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222 22333444445566677777777777777888888888889
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 003536 394 EERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (812)
|+-++++. ...+++..|...|.+++.-++....+.
T Consensus 352 Eeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~ 386 (713)
T PF05622_consen 352 EEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRA 386 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998875 478899999999999988777654443
No 162
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=3.1 Score=45.39 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=103.6
Q ss_pred ccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHH
Q 003536 128 LSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQ 207 (812)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (812)
++.+.-+.+-.||.|.++=|-=+...--.+=.+++.+.+..+++|++++-+..+..++.+.|+- ++.++.
T Consensus 21 ~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~----------l~~eI~ 90 (265)
T COG3883 21 LTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK----------LQKEIA 90 (265)
T ss_pred cchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3444445556669999988888888888888888888888888888888888888887777663 333444
Q ss_pred HHHHHhhhcc-cCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 003536 208 KLQHELTHRG-VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (812)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (812)
.+++-+..|. .-..+.+.++.|......-|.+.... ||+.=++.+-.=|.....|-.-|+..-.+-+..++.-..+
T Consensus 91 ~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~Sk---SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 91 ELKENIVERQELLKKRARAMQVNGTATSYIDVILNSK---SFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccC---cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333331 11122333444444333333344444 5555555555555556566555555555555556666667
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhh
Q 003536 287 EMERSSLESSLKELESKLSISQEDV 311 (812)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (812)
+++-..|.+-..++|.++..-+.-.
T Consensus 168 ~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 168 EDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776655443333
No 163
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.57 E-value=1.7 Score=52.92 Aligned_cols=147 Identities=24% Similarity=0.362 Sum_probs=78.1
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhh----------hhcchhHH
Q 003536 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----------NLSLKNDI 266 (812)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 266 (812)
+.+-=|+++|++||.|++....+. +.|. +. -|.+.++.||.| -|.||+-+
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~----------~~~~-------~~---~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL 488 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESS----------SKPS-------EL---ALNEMIEKLKKEIDLEYTEAVIAMGLQERL 488 (762)
T ss_pred CCCccHHHHHHHHHHHHHhccccc----------CCCC-------Ch---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444558999999999999863221 1111 00 233445555554 36788888
Q ss_pred HHHHHHhhhhhh--------hhhHHHHHHhhhh----------hHHhhHHHHH--hhhhcchhhhhccccchhhhhh-HH
Q 003536 267 KVLKAELNSVKD--------ADERVVMLEMERS----------SLESSLKELE--SKLSISQEDVAKLSTLKVECKD-LY 325 (812)
Q Consensus 267 ~~~~~~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (812)
..|+.+++..+- .-+.+.+|..|-- .|...+.-|- ++--..-+..++-..|+.|-+. +-
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Confidence 888877777654 2233444443321 1222222111 1111112223345556665332 12
Q ss_pred H------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 003536 326 E------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365 (812)
Q Consensus 326 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (812)
+ -.+..+++++...+ +. +...-.-+++|+.||.++..-
T Consensus 569 e~~~~~~~kek~ea~~aev~~-~g-~s~~~~~~~~lkeki~~~~~E 612 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVAS-SG-ASSGDELDDDLKEKVEKMKKE 612 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHHHH
Confidence 2 34556666666666 33 333447788999999988773
No 164
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.40 E-value=3.5 Score=50.06 Aligned_cols=151 Identities=20% Similarity=0.284 Sum_probs=105.8
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 003536 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (812)
..+|-+=|.-|-+++.++...=-.-.+..|++.+|+.+-..+.++|.+.-.++.-.-+----|+ -+++ |-|
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls-dtvd--------Erl 204 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS-DTVD--------ERL 204 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccH--------HHH
Confidence 4556666778889998888877788899999999998888888887776555543322221111 1222 223
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 003536 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (812)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (812)
|.-+. .--+ .|+.-..|-..++.++.-|++++-.| ++++-.++.|++.+++|+++.++-.++++..+..|
T Consensus 205 qlhlk----erma---Ale~kn~L~~e~~s~kk~l~~~~~~k---~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~ 274 (916)
T KOG0249|consen 205 QLHLK----ERMA---ALEDKNRLEQELESVKKQLEEMRHDK---DKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTY 274 (916)
T ss_pred HHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Confidence 32222 2222 24455556666677777777766544 67888999999999999998888899999999999
Q ss_pred HHHHHHHHHH
Q 003536 412 QESVKEFQDT 421 (812)
Q Consensus 412 ~~~~~~~~~~ 421 (812)
++.+.+-+.+
T Consensus 275 ~e~~~~~~~~ 284 (916)
T KOG0249|consen 275 AERRRETETT 284 (916)
T ss_pred HHHHHhhcch
Confidence 9998887776
No 165
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.31 E-value=18 Score=46.06 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=43.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhccc
Q 003536 139 MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGV 218 (812)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (812)
-+++...|....-+.+-+|-+.++-...++.-++.+|...+-++... -+++.+.++++.|..+++=.-|
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-----------~~~e~~~~~l~~Lk~k~~W~~V 276 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-----------EQLEDLKENLEQLKAKMAWAWV 276 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666665555555555555555555554444322 2377888999999999987544
Q ss_pred C
Q 003536 219 S 219 (812)
Q Consensus 219 ~ 219 (812)
.
T Consensus 277 ~ 277 (1074)
T KOG0250|consen 277 N 277 (1074)
T ss_pred H
Confidence 4
No 166
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.29 E-value=11 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhchhhHHH
Q 003536 384 ELMQQKMKLLEERLQRSDEEIHS 406 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~ 406 (812)
+.|+++++.+++++.....++..
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 167
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=93.10 E-value=0.49 Score=51.66 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred CCCC-CEEEEcCcccch---HHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCcccccCCCCC
Q 003536 638 GKQP-DIIHCHDWQTAF---VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD 713 (812)
Q Consensus 638 g~kP-DIIH~HDWhTA~---Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D~led~~~~~ 713 (812)
+.+| ||||+|.- +.+ ....++..... .++|+|+++|...+... .. . ..
T Consensus 61 ~~~~~Dvv~~~~P-~~~~~~~~~~~~~~~k~---~~~k~i~~ihD~~~~~~-~~-----~------------------~~ 112 (333)
T PRK09814 61 SLKPGDIVIFQFP-TWNGFEFDRLFVDKLKK---KQVKIIILIHDIEPLRF-DS-----N------------------YY 112 (333)
T ss_pred cCCCCCEEEEECC-CCchHHHHHHHHHHHHH---cCCEEEEEECCcHHHhc-cc-----c------------------ch
Confidence 3566 99999973 221 10111121111 27999999998754311 00 0 00
Q ss_pred chhHHHHHHHHcCcEEecCcchhhh-hccCcccccccCCCCeEEEeCCCCC
Q 003536 714 RINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGIDT 763 (812)
Q Consensus 714 ~vNllK~AI~~AD~VITVSptyAeE-~G~GL~~lL~~~~eKI~gIpNGID~ 763 (812)
...+++..+..||.|+++|+.+++. ...|+ ...++.+++|..+.
T Consensus 113 ~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~------~~~~i~~~~~~~~~ 157 (333)
T PRK09814 113 LMKEEIDMLNLADVLIVHSKKMKDRLVEEGL------TTDKIIVQGIFDYL 157 (333)
T ss_pred hhHHHHHHHHhCCEEEECCHHHHHHHHHcCC------CcCceEeccccccc
Confidence 0235677888999999999999887 22232 34577777665543
No 168
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.83 E-value=34 Score=43.10 Aligned_cols=51 Identities=31% Similarity=0.397 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 003536 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (812)
+...+..|.+.++.+++.++..+ ...-.-.....+.++..++++.+.+...
T Consensus 495 ~~~~l~~e~~~l~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~e~l~~~~e~~ 545 (908)
T COG0419 495 EEAELREEIEELEKELRELEEEL------IELLELEEALKEELEEKLEKLENLLEEL 545 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666555544 1222223344456666777777766654
No 169
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=16 Score=46.31 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=57.9
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 003536 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (812)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (812)
..+..|+..++++..+++...-++...+.-|. ...+-+.++++.-+.++.+|++=|+.+...+++..++..-..+--
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s 370 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDS 370 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33458899999999999988888887777665 345556677777777777777777777777776666554444333
Q ss_pred hHHHHHH
Q 003536 323 DLYEKVE 329 (812)
Q Consensus 323 ~~~~~~~ 329 (812)
.++++.+
T Consensus 371 ~~~e~~e 377 (1174)
T KOG0933|consen 371 KLLEKAE 377 (1174)
T ss_pred HHHHHHH
Confidence 4444443
No 170
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=4.3 Score=48.21 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=84.3
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHh-------hHHHHHhhhhcchhhhhcccc
Q 003536 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLES-------SLKELESKLSISQEDVAKLST 316 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 316 (812)
..|+...+++.|++.|..|-+-|+ ++...+.++..|++.++.|.. .+..|+++ .|.=--+|.-
T Consensus 229 ~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k---~~~~~~~l~~ 298 (581)
T KOG0995|consen 229 YFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK---KQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 345556666666666665544444 555556666667776665443 33334333 2333345555
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 003536 317 LKVECKDLYEKVENLQGLLAKATKQADQ----AISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (812)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (812)
++.||..-=+..|.||..-+...+|++. +.-|=..|++.. +|+.-| .+|+.--|.+++++..
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~----~l~r~l----------~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN----KLKREL----------NKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHh
Confidence 6666666666666666666655555542 222222333221 122222 2333344667777777
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 003536 393 LEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (812)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (812)
++-..+..-+++.+.+.=|...+.+..-.
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666655443
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.68 E-value=18 Score=44.37 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCCeEEEEecccCCcccCCCHH--HHHHHHHHHHHHCCCeEEEEec
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLP 553 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLG--dVV~~LsKALqklGheV~VItP 553 (812)
.+-||+.|++- .||.| .++.+|+.+|+..|..|.+|=.
T Consensus 544 ~~~kvi~vts~------~~G~GKTt~a~nLA~~lA~~g~rvLlID~ 583 (754)
T TIGR01005 544 AEPEVVETQRP------RPVLGKSDIEANAAALIASGGKRALLIDA 583 (754)
T ss_pred CCceEEEeecC------CCCCChhHHHHHHHHHHHhCCCeEEEEeC
Confidence 34467767653 24444 5889999999999999999843
No 172
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.66 E-value=32 Score=43.93 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 003536 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (812)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (812)
.++++-..|-+..+++|+-|||||+-..-.+ .+.- -+++.++-+++...+++..-+ |-
T Consensus 669 ~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~--~~~k-~~l~~~~~El~~~~~~i~~~~---------------p~---- 726 (1141)
T KOG0018|consen 669 KEIQKRRKEVSSVESKIHGLEMRLKYSKLDL--EQLK-RSLEQNELELQRTESEIDEFG---------------PE---- 726 (1141)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhhC---------------ch----
Confidence 3444444577788999999999998764433 3332 666777777777666665211 11
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh----------------hhhH--HHHHHhhhhhHHhhHHHH
Q 003536 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------------ADER--VVMLEMERSSLESSLKEL 300 (812)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~ 300 (812)
+..+-.+++.. ...+..|+.+...|.+ -+|+ -....++|..++..+.-|
T Consensus 727 ------i~~i~r~l~~~-------e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 727 ------ISEIKRKLQNR-------EGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred ------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333 3334444444443322 2222 233445666677777777
Q ss_pred HhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHH
Q 003536 301 ESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (812)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (812)
|.+|.--+. +..+-...-|-..|++++.-+++..++.+-+...+... +.|+.-+ |--+++++
T Consensus 794 ~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-----------~~~e~k~--k~~~~~~~ 855 (1141)
T KOG0018|consen 794 ENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-----------EELEKKN--KSKFEKKE 855 (1141)
T ss_pred hhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-----------HHHHHHH--HHHHHHHH
Confidence 777765443 44444444777889999999988777666665554444 3333312 33334433
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 003536 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 428 (812)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (812)
..-.-....+..+=..++..+.+|.+-=..-..-..|-|+.|.+-|=+
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 333333444455555666667776664444444555666666665543
No 173
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.63 E-value=20 Score=47.69 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCC
Q 003536 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (812)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (812)
-|..-+|++-++..+|+....++..-+.+|.+.+..+ .+-.-...-|+.|.++.+.-+...... ..+.
T Consensus 280 ERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee~-----lr~q---- 347 (1486)
T PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDLEQDYQAASDHLNLVQTA-----LRQQ---- 347 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----
Confidence 4556667776777777777777777777777765554 232333445666666666554443210 0000
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 003536 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (812)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (812)
.........+..+..++....++-..++..+..+..+ +...++.+..+.++++.+...+..++.++...+..+.
T Consensus 348 ---~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeE---leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 348 ---EKIERYQADLEELEERLEEQNEVVEEADEQQEENEAR---AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111122222222222222222223222222 2334455556666666666666666666666666666
Q ss_pred ccccchhhh
Q 003536 313 KLSTLKVEC 321 (812)
Q Consensus 313 ~~~~~~~~~ 321 (812)
.+..-+.=|
T Consensus 422 ~Le~~~~~~ 430 (1486)
T PRK04863 422 ALERAKQLC 430 (1486)
T ss_pred HHHHHHHHh
Confidence 666555555
No 174
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.59 E-value=27 Score=41.41 Aligned_cols=129 Identities=24% Similarity=0.330 Sum_probs=58.0
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 003536 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (812)
|...+.|-..|+..+++|+.+|..++.--.++..=+ ....+.+..|+.+|...+....-+..-.-+ --+....|
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e---~~a~~~v~~L~~eL~~~r~eLea~~~~e~~---~k~~~~~l 370 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKERE---KEASSEVSSLEAELNKTRSELEAAKAEEEK---AKEAMSEL 370 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHhhHHHHHHHHHHHHHHHHhhhcc---hhhhHHHH
Confidence 334445556666666666666655554333322211 222333333333333333222221111111 12334445
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 003536 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (812)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (812)
..-|..++..+++|-.- -...+..+. ++++-.+.....++-.|.||+..-.++..
T Consensus 371 ~~~Lqql~~Eae~Ak~e---a~~~~~E~~-----------------~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKKE---AEEAKEEVE-----------------KAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555211 112222333 33334455566677777777777766655
No 175
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=92.52 E-value=0.17 Score=62.38 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++++.+ ..=|+|=+||.|=.++| -+++.. ..++++.|..|.+ ||...+..| +|
T Consensus 136 ~FA~~i~~~~----~~~d~vWvhDYhL~llp-~~lR~~----~~~~~igfFlHiP-----FPs~e~fr~-lp-------- 192 (797)
T PLN03063 136 MFLDVVKENY----EEGDVVWCHDYHLMFLP-QYLKEY----NNKMKVGWFLHTP-----FPSSEIYKT-LP-------- 192 (797)
T ss_pred HHHHHHHHhc----CCCCEEEEecchhhhHH-HHHHHh----CCCCcEEEEecCC-----CCCHHHHhh-CC--------
Confidence 4555554433 23389999999999984 555542 3578999999987 333222110 11
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCcc----cc-cccCCCCeEEEeCCCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLH----ST-LNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~----~l-L~~~~eKI~gIpNGID~d~WnP~ 769 (812)
.+ .-+..|+..||.|-.-+..|++-|- .|++ .+ ...+..+|.+||||||++.|.|.
T Consensus 193 --------~r-~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~ 259 (797)
T PLN03063 193 --------SR-SELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINT 259 (797)
T ss_pred --------CH-HHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHH
Confidence 00 1233466667777777777766510 0111 01 11234679999999999888653
No 176
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.19 E-value=18 Score=47.56 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=11.0
Q ss_pred CCCCCEEEEcCcccchH
Q 003536 638 GKQPDIIHCHDWQTAFV 654 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~V 654 (812)
...|++|.+.+.-+++=
T Consensus 1275 ~~~p~lilLDEp~a~lD 1291 (1353)
T TIGR02680 1275 PHAPRLILLDEAFAGVD 1291 (1353)
T ss_pred CCCCCEEEEeCccccCC
Confidence 35777888877655543
No 177
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.15 E-value=20 Score=40.09 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=28.8
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA 279 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (812)
+..|-+-+..|.+||..|+.....|+++-..+-+-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 45677889999999999999999999887755443
No 178
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.05 E-value=35 Score=41.39 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=82.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
+|.+|+..||+.+..-..+. +.++.++++..+.+..++-|...-+...+.|+..+.....|+.-- .
T Consensus 423 pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs-----------~ 488 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS-----------A 488 (594)
T ss_pred HHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-----------H
Confidence 77899999998887665554 446777888888888888888888888888888888877775421 1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (812)
-+..+-.......||-+.--.||.....||+.+..|...|.+.-
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12233334444556777777799999999999999999998753
No 179
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.05 E-value=38 Score=43.89 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh-----hHHHHHHHHHHHHH
Q 003536 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK-----DLYEKVENLQGLLA 336 (812)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 336 (812)
.-++.+...|+-|++.+++.+..+|..+..+ ..-.+|..++.|.. .+-..++.||..+.
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~-~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999888744 34445555555432 22334445554443
No 180
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.01 E-value=23 Score=42.87 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
|+..+......++ -..|..-|-|+-..+.|-+++=.|
T Consensus 473 L~~e~e~~~k~~~--Rs~Yt~RIlEIv~NI~KQk~eI~K 509 (594)
T PF05667_consen 473 LVKELEKLPKDVN--RSAYTRRILEIVKNIRKQKEEIEK 509 (594)
T ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444432 345666666666666655555444
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.88 E-value=11 Score=43.55 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=13.2
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 003536 280 DERVVMLEMERSSLESSLKELESKLSI 306 (812)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (812)
.+.+...+-++..+++.++.|+.++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444455555555555555443
No 182
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.79 E-value=8 Score=42.16 Aligned_cols=161 Identities=23% Similarity=0.351 Sum_probs=97.2
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH---HHHHHHHHHHHHHHh
Q 003536 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL---YEKVENLQGLLAKAT 339 (812)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 339 (812)
+..++.+|++|.+.++. .+++-+.|+..+.+|++++..+|++|+-|+|-+. +.. -=++.+|...|+.++
T Consensus 62 ~~~l~~ak~eLqe~eek------~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEK------EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred hHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 45667777777766654 4577888999999999999999999999999876 222 224566666666544
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchH---HHHHHH--------HHHHHHHHHHHHHHhhchhhHHHHH
Q 003536 340 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE---KMQQYN--------ELMQQKMKLLEERLQRSDEEIHSYV 408 (812)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (812)
.+ .++..|.|.+.... ...+++.. +-+..+ .-++. .+-.+. ..+.-|..++
T Consensus 134 ~~-------------qqdEldel~e~~~~-el~~l~~~~q~k~~~il~~~~~k~~~~~~~---~l~~~~-~~N~~m~kei 195 (258)
T PF15397_consen 134 DS-------------QQDELDELNEMRQM-ELASLSRKIQEKKEEILSSAAEKTQSPMQP---ALLQRT-LENQVMQKEI 195 (258)
T ss_pred HH-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchH---HHHHHH-HHHHHHHHHH
Confidence 32 12223333322211 01111110 000000 01111 111122 4567788899
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHH-HHHHHhc
Q 003536 409 QLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF-WSRLLLI 452 (812)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~-~~~lLL~ 452 (812)
..+.+.+.+|...+..|+.|-+. +...+. -|+++ +-.+|++
T Consensus 196 ~~~re~i~el~e~I~~L~~eV~~--L~~~~~-~~Re~iF~dvll~ 237 (258)
T PF15397_consen 196 VQFREEIDELEEEIPQLRAEVEQ--LQAQAQ-DPREVIFADVLLR 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhc-chHHHhhHHHhcC
Confidence 99999999999999999998887 555555 44454 4466654
No 183
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.52 E-value=6.7 Score=41.01 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=85.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
.|-..+..+-+.|.-|.++|+.|+.++-...-.-++-..++.|-..|...++.||..-....+-. .-++-|-..|-.
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~---rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA---RQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45566777778888888888888888888888888888888898889999998887654433322 233444445666
Q ss_pred HHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHHHHHHHHHHHHh-----------HhhhhhhchHHHHHHHHHHHH
Q 003536 327 KVENLQGLLAK-------ATKQADQAISVLQQNQELRKKVDKLEESLD-----------EANIYKLSSEKMQQYNELMQQ 388 (812)
Q Consensus 327 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 388 (812)
++++||.-..+ ..++..+ .-..+.+|+.+|=.-|..+- ...-++...+......+.|+.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e---L~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~ 179 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE---LATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRL 179 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666543333 2222222 22466677777633332221 111222233334444555555
Q ss_pred HHHHHHHHH
Q 003536 389 KMKLLEERL 397 (812)
Q Consensus 389 ~~~~~~~~~ 397 (812)
++-.||+.+
T Consensus 180 e~s~LEeql 188 (193)
T PF14662_consen 180 EKSRLEEQL 188 (193)
T ss_pred HHHHHHHHH
Confidence 555555554
No 184
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.44 E-value=9.7 Score=44.91 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=26.9
Q ss_pred HHHHHHHhH-hhhhhhc-------hHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003536 360 DKLEESLDE-ANIYKLS-------SEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (812)
Q Consensus 360 ~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (812)
+++-++|++ .....++ .+.+++..+.+++.+.+++..++..-.|+
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666776 3333444 36677777777777777777664433333
No 185
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.09 E-value=12 Score=41.64 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCC
Q 003536 406 SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDM 441 (812)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m 441 (812)
..+.-.+..+.+.+..+..++..-+....--|+|..
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 334444555666666666666555554455555543
No 186
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.04 E-value=30 Score=38.60 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 003536 365 SLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAV 434 (812)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (812)
....-+-...+.-.+|..|-+|+|++. .-..+.|..=..- -..=..|++++.+|..++++.++
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLd---dA~~K~~~kek~V----iniQ~~f~d~~~~L~ae~ekq~l 274 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLD---DAHNKADNKEKTV----INIQDQFQDIVKKLQAESEKQVL 274 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455567778888888654 3333333211111 11123599999999999999543
No 187
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=23 Score=43.54 Aligned_cols=166 Identities=21% Similarity=0.258 Sum_probs=111.5
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (812)
+....++..+.+.|.-| +.++.+-|..-++|-.||.......+.|.....+..+.+..+.+-.. .+-
T Consensus 457 ~t~gsA~ed~Qeqn~kL----------~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~---~~~ 523 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKL----------LQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD---KLE 523 (698)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34455666666665443 33445666677777777777777777777777777777776665433 566
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (812)
.++-+|+..+...|..+..-+ .++....+++|..=..|.=++-+.+.+|...+..+.+++.++.+...+..++.
T Consensus 524 ~~i~~leeq~~~lt~~~~~l~------~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 524 LKIGKLEEQERGLTSNESKLI------KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHhhHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777655442 35566666777777777777778888888888888888888888887766653
Q ss_pred H--HH-HHHHHHHHHHHHHHHhhHHhhh
Q 003536 406 S--YV-QLYQESVKEFQDTLHSLKEESK 430 (812)
Q Consensus 406 ~--~~-~~~~~~~~~~~~~~~~~~~~~~ 430 (812)
- +. +--++.++.+...|..+++++.
T Consensus 598 ~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 598 IEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2 22 2235566666666666665554
No 188
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=49 Score=40.79 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=94.3
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHH
Q 003536 135 NLISMIRN-AEKNILLLNEARVQALEDLHKILQEKEALQGEINAL--EMRLAETDARIRVAAQEKIHVELLEDQLQKLQH 211 (812)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (812)
+++++.++ +++=..++.+.+..--. -..|+..|.+++...+.+ .++++.-+.+.+|-...+.-++-+..++.++-.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~e~~k-~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k 414 (698)
T KOG0978|consen 336 KLRSKLLESAKKLKILLREKDRESQK-ERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDK 414 (698)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788887 66666666666555433 345677777777653332 234444455555443333334444444443332
Q ss_pred HhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 003536 212 ELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS 291 (812)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (812)
+-... ...-. +.+....-..+-+++++|..+-+++.-|-..++...++..+ -.+++..|-
T Consensus 415 ~e~~e-------~~k~~------~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed---~Qeqn~kL~---- 474 (698)
T KOG0978|consen 415 EERSE-------IRKQA------LDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED---MQEQNQKLL---- 474 (698)
T ss_pred HHHHH-------HHhhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----
Confidence 22211 00000 00001111234466677776666665455555544444433 333333332
Q ss_pred hHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH
Q 003536 292 SLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQE 354 (812)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (812)
.+++.+--..=.=+++.-......+.|-++-..|...+...+.+++.......++++
T Consensus 475 ------~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee 531 (698)
T KOG0978|consen 475 ------QELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE 531 (698)
T ss_pred ------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223344444455566677777777777777766666666555554443
No 189
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.78 E-value=2.9 Score=48.28 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (812)
.++..|+..++....+.......-.+...|++.++-.++
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~ 369 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKS 369 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333444455555544443
No 190
>PRK01156 chromosome segregation protein; Provisional
Probab=90.74 E-value=54 Score=41.07 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=18.6
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 278 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (812)
+.....++..+.++=..|++.+..++.++.....
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 504 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKK 504 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665555555556555555554433
No 191
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.69 E-value=11 Score=42.75 Aligned_cols=137 Identities=24% Similarity=0.391 Sum_probs=66.7
Q ss_pred HHhhhhhhhhhHHHHHHhhh----------------hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 003536 271 AELNSVKDADERVVMLEMER----------------SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (812)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (812)
..+..+++-|.||..||+=- ..|-.+|.+|++|++.-+. .+|..++-.-+.|-.+.+.|.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~-- 281 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA-- 281 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH--
Confidence 35677778888888777632 1244567777777766532 344443333333333333322
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhc----hHHHHHHHHHHHHHHHHHHHHHhh---chhhHHHH
Q 003536 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS----SEKMQQYNELMQQKMKLLEERLQR---SDEEIHSY 407 (812)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 407 (812)
++.+ + ..+..+...||+.|=+.|..-.-+--. .+.|+.++ -||+.+..+=.+|.. .-.+|.+.
T Consensus 282 --~~~~----~---~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 282 --EKRK----E---AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred --hccc----c---ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 123345556777776666554333221 12222222 234444444444433 33455555
Q ss_pred HHHHHHHHHHHHHH
Q 003536 408 VQLYQESVKEFQDT 421 (812)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (812)
+.-+...+...+..
T Consensus 352 l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 352 LKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566665555554
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.68 E-value=5 Score=49.83 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=78.8
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 003536 269 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISV 348 (812)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (812)
+-.+|.++. -|-...|-+|-..+.-..++|+.+..+||+-+...+- -.+.+-|-|.+||+.|.-.++|.....--
T Consensus 480 ~~EQL~Esn--~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdq---TI~KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 480 MNEQLQESN--RELELDLREELDMAKGARKELQKRVEAAQETVYDRDQ---TIKKFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 334444432 3445667788888888899999999999998776543 33457789999999998888877777666
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 003536 349 LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (812)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (812)
++|..-+. .+.-.||.---.-.-|-.-+.++++.+|=++++-.
T Consensus 555 s~q~~s~~----------~et~dyk~~fa~skayaraie~QlrqiEv~~a~rh 597 (1243)
T KOG0971|consen 555 SQQPPSVD----------PETFDYKIKFAESKAYARAIEMQLRQIEVAQANRH 597 (1243)
T ss_pred hcCCCCCc----------hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665322 12223332222223377778888888888776543
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=12 Score=44.52 Aligned_cols=135 Identities=24% Similarity=0.325 Sum_probs=100.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
.-.+|+++-+.||--||+-|..|..+ .++.++.+..|..+-++|.|+.-.+.|+| ++|.+--..=-|
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~---l~eke~sl~dlkehassLas~glk~ds~L----------k~leIalEqkkE 394 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAE---LTEKESSLIDLKEHASSLASAGLKRDSKL----------KSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHHHHHHHHH
Confidence 45788999999999999999999984 46778889999999999888877776654 444442112246
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (812)
+.-.+.+.|-+|.+.+|.|- +--.-.|+++.|+ .+++-|+--|-+.|..++.+-+=.|.+|.--..-|
T Consensus 395 ec~kme~qLkkAh~~~ddar-~~pe~~d~i~~le------~e~~~y~de~~kaqaevdrlLeilkeveneKnDkd 462 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDAR-MNPEFADQIKQLE------KEASYYRDECGKAQAEVDRLLEILKEVENEKNDKD 462 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhh-cChhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 67778899999999999984 3344455555555 37888888888999999888887777775443333
No 194
>PLN02939 transferase, transferring glycosyl groups
Probab=90.52 E-value=7.3 Score=49.27 Aligned_cols=151 Identities=25% Similarity=0.315 Sum_probs=75.0
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhh---hHHhhHHHHHhhhhcchhh--------hhccccch
Q 003536 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS---SLESSLKELESKLSISQED--------VAKLSTLK 318 (812)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 318 (812)
++++.+..|---|...|+-|+..|++ ||.++...-.++. .|+..|..|-..++.--++ ..+|.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRLSE---TDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhh---hhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHH
Confidence 45666666666677777777766654 3333322222221 1333333333333333322 23344444
Q ss_pred hhhhhHHHHHHHHHHHHHHHhh-----------------------------hhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 003536 319 VECKDLYEKVENLQGLLAKATK-----------------------------QADQAISVLQQNQELRKKVDKLEESLDEA 369 (812)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (812)
-|-+-|-+-++.|..-|...++ |+|-+-+.--|..-+-.||+.|+..|+.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (977)
T PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRA 312 (977)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333222 22322222223344777778887777766
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003536 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (812)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (812)
.---.-.--+-+-|.-||.||..||+.|.+.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (977)
T PLN02939 313 TNQVEKAALVLDQNQDLRDKVDKLEASLKEANVS 346 (977)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHh
Confidence 4332222222334566788888888888876644
No 195
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=90.49 E-value=1.4 Score=48.69 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=28.6
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
|||++++. |. .|=+.. +-.|+++|.++||+|+++++..
T Consensus 1 mrIl~~~~---p~--~GHv~P-~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI---GS--RGDVQP-LVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC---CC--cchHHH-HHHHHHHHHHCCCeEEEeeCHh
Confidence 89999875 21 233333 4589999999999999998764
No 196
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=90.31 E-value=0.46 Score=57.76 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++++.+ ..-|+|-+||.|-.++| .+++.. ....|+-|..|.+-+.+ .+..| +|.
T Consensus 122 ~fA~~~~~~~----~~~d~vwvhDYhl~l~p-~~lr~~----~~~~~igfFlH~pfP~~-----~~f~~-lp~------- 179 (726)
T PRK14501 122 RFAEAIAAIA----RPGDVVWVHDYQLMLLP-AMLRER----LPDARIGFFLHIPFPSF-----EVFRL-LPW------- 179 (726)
T ss_pred HHHHHHHHhc----CCCCEEEEeCchhhhHH-HHHHhh----CCCCcEEEEeeCCCCCh-----HHHhh-CCC-------
Confidence 4555554433 24499999999999994 455432 24688999999874332 11111 110
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCcc---c--ccccCCCCeEEEeCCCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLH---S--TLNFHSKKFVGILNGIDTDAWNPA 769 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~---~--lL~~~~eKI~gIpNGID~d~WnP~ 769 (812)
-.-+..++..||.|-.=+..|++.|- .|+. . .+..+..++.+||||||++.|.|.
T Consensus 180 ----------~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~ 245 (726)
T PRK14501 180 ----------REEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNS 245 (726)
T ss_pred ----------hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHH
Confidence 01223345555555555555544300 0000 0 011233568999999999988764
No 197
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.29 E-value=17 Score=39.23 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhh-hHHHHHHHHHHHHHHhH
Q 003536 324 LYEKVENLQGLLAKATKQADQAISVLQQ-NQELRKKVDKLEESLDE 368 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 368 (812)
+-+++..++..+..+.+.++.++..+.+ -+.+..|-+.|.+-|..
T Consensus 129 l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 129 LKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3344444444444444445555444444 45566666666655544
No 198
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.17 E-value=9.3 Score=44.67 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=66.8
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 003536 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (812)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (812)
.+..-+|-+..+.+.||++|.-|-+-|+.....=...+.++|+-..|...---++++...|++|. |+=.-+++.|+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~---~~~~g~l~kl~~ 337 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS---QEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 34555677788888888888888888777766666677777777777777777888888888774 444556666666
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhh
Q 003536 320 ECKDLYEKVENLQGLLAKATKQA 342 (812)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ 342 (812)
||.--=+.++.||+-.|...+|.
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 66544444444444444443333
No 199
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.14 E-value=35 Score=38.01 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=62.4
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-
Q 003536 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI- 371 (812)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 371 (812)
+..+|.|+..++..-.+.-.+ +..|-..|-+|...|-...+. + ++.+.-+-...+|+-++ +++-|+.+..
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k---~~~eN~~L~eKlK~l~eQye~---r-E~~~~~~~k~keLE~Ql--~~AKl~q~~~~ 182 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIK---LREENEELREKLKSLIEQYEL---R-EEHFEKLLKQKELEVQL--AEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhHHHHHHHH--HHHHHHHHHHH
Confidence 566777777777655555444 333323344444333333332 2 22222222344444333 2222332221
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 003536 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (812)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (812)
.+-..++.+++.+.|=.+...++ .|.....+...||.+|.+-.++||+||.+
T Consensus 183 ~~~e~~k~~~~~~~~l~~~~~~~-~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 183 AEQEKEKAKQEKEILLEEAAQVQ-TLKETEKELREQLNLYSEKFEEFQDTLNK 234 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444455553333333222 35556778899999999999999999864
No 200
>PF13514 AAA_27: AAA domain
Probab=89.77 E-value=74 Score=41.16 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=10.8
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q 003536 348 VLQQNQELRKKVDKLEESL 366 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (812)
-.++...++.++..++..|
T Consensus 852 ~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 852 RAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655
No 201
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.60 E-value=21 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=24.5
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (812)
...++.|..|++..-.+|+...+.+...++.-+.+
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~ 767 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHI 767 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888888887777776666655544
No 202
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.60 E-value=9.9 Score=42.28 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=11.1
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhh
Q 003536 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (812)
++.++.+-..+++.++.+++++....+
T Consensus 153 i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 153 IKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333
No 203
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=89.51 E-value=0.93 Score=55.50 Aligned_cols=105 Identities=25% Similarity=0.393 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhh-------------hh-------hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhc--hHHHHHH
Q 003536 325 YEKVENLQGLLAKATKQ-------------AD-------QAISVLQQNQELRKKVDKLEESLDEANIYKLS--SEKMQQY 382 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 382 (812)
-++.+.++..|.++++. .| ....+.-+..+.++||+++=.++.- +.+.+. ....++.
T Consensus 152 ~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f-~~~~~p~~~~~p~e~ 230 (759)
T PF01496_consen 152 REKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGF-ERYDLPEDEGTPEEA 230 (759)
T ss_dssp HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT---B----GGGGG-HHH
T ss_pred hhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCc-eecCCCCccccHHHH
Confidence 46888899999988876 11 1223333445567777777666532 333332 2245566
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 003536 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (812)
-..++++++.+++.++...+++.+.+.-|.+.+.+..+.+.+.++..+
T Consensus 231 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 278 (759)
T PF01496_consen 231 IKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYE 278 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999888888887777777766554433
No 204
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.46 E-value=31 Score=41.72 Aligned_cols=114 Identities=24% Similarity=0.354 Sum_probs=78.9
Q ss_pred hhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhH
Q 003536 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSK 250 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (812)
.+.+|+.+=..|+-+.. ++.-+|.+.+-||+.++.-..+ ..+ ...+.+|....
T Consensus 233 k~aev~lim~eLe~aq~----------ri~~lE~e~e~L~~ql~~~N~~------------~~~-----~~~~~i~~~~~ 285 (629)
T KOG0963|consen 233 KAAEVSLIMTELEDAQQ----------RIVFLEREVEQLREQLAKANSS------------KKL-----AKIDDIDALGS 285 (629)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhh------------hhh-----ccCCchHHHHH
Confidence 34445555445544433 3445677777788777663211 111 13456889999
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 003536 251 ELDSLKTENLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (812)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (812)
-|+..-.||..|-+||+.+++.+.+--++ -.-|..||+|-....+.|.+|+.+|-. +.|.-
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~-~sDYe 347 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS-RSDYE 347 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHH
Confidence 99999999999999999999988765444 356788999999999999999888754 34443
No 205
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.43 E-value=27 Score=41.36 Aligned_cols=158 Identities=25% Similarity=0.270 Sum_probs=99.6
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHH----Hhh---hhcchhhhhcccc-
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKEL----ESK---LSISQEDVAKLST- 316 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~- 316 (812)
-+|-+-|..+++||+.|+...--+|++-.-+.+-+..++ +++||-.-++..++-+ ++| ++.-|+..+||-.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778899999999999999999998877777777777 7788766655554433 443 5556777666544
Q ss_pred ---chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh----------hhhhchHHHHHHH
Q 003536 317 ---LKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN----------IYKLSSEKMQQYN 383 (812)
Q Consensus 317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 383 (812)
++-+-+.+--.+|.|..+|.-+...-++ .-....++++|--.+.+-|.||- .-+.+++..+.+-
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q---l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ---LTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 3333344433445555555433322222 23456778888887777777763 2234444444443
Q ss_pred ------HHHHHHHHHHHHHHhhchhhHHH
Q 003536 384 ------ELMQQKMKLLEERLQRSDEEIHS 406 (812)
Q Consensus 384 ------~~~~~~~~~~~~~~~~~~~~~~~ 406 (812)
.+.+||+.+.++.=..-|+++-.
T Consensus 319 ~~fp~~~~aae~i~lt~r~~~qldee~s~ 347 (596)
T KOG4360|consen 319 HHFPQLSLAAEKIELTMRKNLQLDEEASQ 347 (596)
T ss_pred hhCChhhHHHHHHHHhhhhhhcccccccc
Confidence 56777788777666666666543
No 206
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.39 E-value=10 Score=39.61 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHH
Q 003536 383 NELMQQKMKLLEERLQRSDEEIHSYVQ 409 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (812)
|-+|++|++.+.+.+..-+.++.+.+.
T Consensus 145 n~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777776554
No 207
>PRK11281 hypothetical protein; Provisional
Probab=89.33 E-value=22 Score=45.97 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003536 406 SYVQLYQESVKEFQDTLHSL 425 (812)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ 425 (812)
+.+++++=.+.+.++.|...
T Consensus 363 Adlrl~~f~~~q~~~~l~~~ 382 (1113)
T PRK11281 363 ADLRLEQFEINQQRDALFQP 382 (1113)
T ss_pred HHHHHHHHHHHHHHHHhcCh
Confidence 45777777777777766443
No 208
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.28 E-value=9 Score=37.21 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=70.5
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 003536 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (812)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (812)
+++.|+.|.-.++..+.....++....+ .++........+=...|..+.-=-+|+-.|..++-++..+-..+..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333222 2334444445555556666766667788888888877776666666
Q ss_pred HHHHHHHHhhhhhhHHHH-hhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 003536 331 LQGLLAKATKQADQAISV-LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (812)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (812)
|+.-.+.|....+.+-.. -.+-..|.+.++.++. +++.|..-|.+|++++..+
T Consensus 78 l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~----------r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWEEQKEQLEKELSELEQ----------RIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 666666655554433221 2233344444444433 4566777888888877643
No 209
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.12 E-value=21 Score=44.05 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=25.2
Q ss_pred hhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 003536 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (812)
||+++..|...++++. -++.+.--.+|.+-+|||++|+-++
T Consensus 434 Le~elekLk~eilKAk-----~s~~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 434 LEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred HHHHHHHHHHHHHhcc-----cccCCCCChHHHHHHHHHHHHHHHH
Confidence 5555555555555551 1233444456778889888888775
No 210
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.12 E-value=43 Score=39.00 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHh
Q 003536 138 SMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHEL 213 (812)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (812)
.-+.+++++|--++...-..=+...+..++.-.+..+|+.++..|.+|...++...+ ...-++..|++|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~---~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK---QIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 446777888877777666555555565556566666666666666666555544333 2334455566665544
No 211
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.79 E-value=88 Score=40.75 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=34.7
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 003536 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 311 (812)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (812)
....|..|-..++..+..++.++- ..+.+..-+.+.|..+...+..+|.++..-|+-+
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~---s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~i 231 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQL---SANNRQELARLRSELAKKRSQQLDAYLQALRNQL 231 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777765 3445555555555555555555555544444433
No 212
>PRK11281 hypothetical protein; Provisional
Probab=88.64 E-value=83 Score=41.02 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=32.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 003536 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 410 (812)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (812)
..++++--+.+.++++.+-++|++=.+..|.++.-.+.+
T Consensus 395 ~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l 433 (1113)
T PRK11281 395 SEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINL 433 (1113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777778888999999999999999999888776666
No 213
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.48 E-value=10 Score=42.21 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=40.6
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
.|...++.|+++...|...++.+..-+. ...++...|++|...|++...+ ....|..+|..++.+-...-.
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~Lk~~~~e------~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLP---KLRERKAELEEELENLKQLVEE------IESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh------hhhcCHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443332221 2223334444444444444444 445666677777766666666
Q ss_pred HHHHHHHHHHH
Q 003536 327 KVENLQGLLAK 337 (812)
Q Consensus 327 ~~~~~~~~~~~ 337 (812)
+++..+..|+.
T Consensus 224 ~i~~~k~~l~e 234 (325)
T PF08317_consen 224 EIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 214
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.48 E-value=28 Score=42.76 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=13.5
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHH
Q 003536 397 LQRSDEEIHSYVQLYQESVKEFQDT 421 (812)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (812)
+.+-.+|....=++|+..+..++.+
T Consensus 378 ~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 378 LDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666666666553
No 215
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.47 E-value=7.3 Score=43.28 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhchh
Q 003536 138 SMIRNAEKNILLLNEA-----RVQALEDLHKILQE-KEALQGEINALEMRLAETD 186 (812)
Q Consensus 138 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (812)
..++|.-.+-.+...+ |.+-++.|...|.+ .+.|+...+.|...++..+
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555543 55666666555543 4566666666666555544
No 216
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.33 E-value=32 Score=42.80 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.4
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLK 298 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 298 (812)
.+.-..|-.|||.|+..+-.++.+|-+. .--++.+-.|||+|+-+..-++
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3445567778888887777666666554 3445666778888876554433
No 217
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.21 E-value=5.1 Score=45.52 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (812)
.+...|+..++....+..+.-..-.+...|+++++-.+.
T Consensus 318 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~ 356 (444)
T TIGR03017 318 QREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQR 356 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444544444443333334455566666655444
No 218
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.97 E-value=29 Score=44.06 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 003536 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (812)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (812)
+.|...+.|..+|++.-..||..+....+.+.---+ .++-++-.+|.+|......+-.|-- ...-|..
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~---~~~~l~kdVE~~rer~~~~~~Ie~l------~~k~~~v--- 241 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED---EIDKLEKDVERVRERERKKSKIELL------EKKKKWV--- 241 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHhcccc---
Confidence 346777888899999999999999887776653333 4567888899999888876554310 0111110
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 003536 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (812)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (812)
..--...|++.++..--.+|.++..+..+.. ......-.||.|++.+.+..+.+-.-+-.+-+.+-++..
T Consensus 242 -----~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~---pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e-- 311 (1072)
T KOG0979|consen 242 -----EYKKHDREYNAYKQAKDRAKKELRKLEKEIK---PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE-- 311 (1072)
T ss_pred -----chHhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0112255667777666666666666655433 333444455555555555555544444443333222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH-HHHHHHHHHH
Q 003536 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN-ELMQQKMKLL 393 (812)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (812)
.-+..=++|+.++.-|..+.+++++--. .=+-.++-++.+++-|.+++++.-.-+++|..+ +.+|.+..-+
T Consensus 312 -k~~~~~~~v~~~~~~le~lk~~~~~rq~---~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~ 383 (1072)
T KOG0979|consen 312 -KLKEIEDEVEEKKNKLESLKKAAEKRQK---RIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKL 383 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhh
Confidence 0012233455555555555555554311 223456777888888999999888888776443 3344443333
No 219
>PRK09039 hypothetical protein; Validated
Probab=87.48 E-value=18 Score=40.70 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 003536 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (812)
.+++.++..|++.|.+... .+++ .+.-..+|+++|..|+.++..-..+|.+ -++..++.|..+..|.
T Consensus 112 ~~~~~~~~~l~~~L~~~k~--~~se-~~~~V~~L~~qI~aLr~Qla~le~~L~~----ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQ--VSAR-ALAQVELLNQQIAALRRQLAALEAALDA----SEKRDRESQAKIADLG 178 (343)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3556666666666655432 2222 2334577888888888876655555444 3444455555555554
No 220
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.30 E-value=89 Score=40.75 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=26.4
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 278 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (812)
+.+++++..|+++.-+|++++++++.++-.+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 466788888888899999988888877766655
No 221
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.24 E-value=44 Score=40.12 Aligned_cols=178 Identities=20% Similarity=0.298 Sum_probs=91.9
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhH-HHHHhhhhcchhhhhccccchh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSL-KELESKLSISQEDVAKLSTLKV 319 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (812)
+-.+-.|+..||.||--|.++|..+|.+|+.- -+...++-.|..|...+...- .+++.....++-|.. .....
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~ 241 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence 44678899999999999999999999877642 355667778888888776332 345555555566654 23332
Q ss_pred hhhh-HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHH---HHHHHHHHHHHHHHH
Q 003536 320 ECKD-LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY-KLSSEKM---QQYNELMQQKMKLLE 394 (812)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~ 394 (812)
+.++ |..-+..+++.-+.--.+..+.+- .-.++||+++..+-+.++.. -..-|.+ +.-..-|+.|+-.||
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE-----~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE 316 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIE-----SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc
Confidence 2221 223333333333331111111111 12678899988765555432 1222222 222233555665555
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 003536 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (812)
.|-......|.-+=-.-.+.-.-|..+|+....+-
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEI 351 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 55444444433322111233334444444433333
No 222
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=87.04 E-value=2.4 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCC
Q 003536 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNl 679 (812)
..+.||||.|.--+.++.-.++. + ...++++|||=|++
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~h--A--~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILH--A--RTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHH--H--HhCCCcEEeecccc
Confidence 35889999998766665222221 1 13589999999987
No 223
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.95 E-value=73 Score=37.75 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=44.1
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 003536 250 KELDSLKTENLSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (812)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (812)
.|++.|+.|...+++.|+.|..++.. ..+..+.-..++.|+..++.-+++++..+.... .+ ..||.-.+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~-e~e~~l~~~el 346 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPEL------TT-EAELRLYYQEL 346 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------ch-HHHHHHHHHHH
Confidence 55666666666666666666666522 223333344566677777777777776654322 22 55666566555
Q ss_pred HHHHHHH
Q 003536 329 ENLQGLL 335 (812)
Q Consensus 329 ~~~~~~~ 335 (812)
..++.=+
T Consensus 347 ~~~~ee~ 353 (511)
T PF09787_consen 347 YHYREEL 353 (511)
T ss_pred HHHHHHH
Confidence 5555433
No 224
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=86.89 E-value=43 Score=35.03 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=56.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHHHHHHHH---HHHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHH
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLY-QESVKEFQDTL 422 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 422 (812)
+++..|.+.+.++++.+.++..... +-..+|+++.+.- +++++...+.++....+.|..-+.-+ ..-+.+|..+|
T Consensus 113 ~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l 192 (216)
T cd07627 113 LWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSV 192 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666665431 2235666655544 56788888888988888888877776 66788888888
Q ss_pred HhhHHh
Q 003536 423 HSLKEE 428 (812)
Q Consensus 423 ~~~~~~ 428 (812)
....+-
T Consensus 193 ~~~~e~ 198 (216)
T cd07627 193 EIYLES 198 (216)
T ss_pred HHHHHH
Confidence 776553
No 225
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.78 E-value=26 Score=39.42 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=33.0
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV 284 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (812)
-++|+.-|...|++|..|+.++..|+++|.+...--+-++
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3588999999999999999999999999887765544333
No 226
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.51 E-value=1.3e+02 Score=40.09 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=56.6
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 003536 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (812)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (812)
.+.++++.++..++..+.....++.-+ ....+.++.+++.++.++..- ..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~l~~~~~~l------------------------~~~~a 328 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEEREL---DARTEALEREADALRTRLEAL------------------------QGSPA 328 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh------------------------cCCHH
Confidence 344555666666666666655554322 223456677777777777653 12223
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 003536 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (812)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (812)
....++++.++.+...+..++.....++.. -..+...++.+...++..+.+.+..+..+
T Consensus 329 ~~~~~eL~el~~ql~~~~~~a~~~~~~~~~---a~~~~e~~~~~~~~~~~r~~~~~~~l~~~ 387 (1353)
T TIGR02680 329 YQDAEELERARADAEALQAAAADARQAIRE---AESRLEEERRRLDEEAGRLDDAERELRAA 387 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777655555555544444322 23333333444333444444444443333
No 227
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.89 E-value=16 Score=43.45 Aligned_cols=41 Identities=41% Similarity=0.474 Sum_probs=25.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHH
Q 003536 316 TLKVECKDLYEKVENLQGLLAK-------ATKQADQAISVLQQNQELR 356 (812)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 356 (812)
.|+.|.+.|-|.+|-|...++. |.+|-+.|...|++-.+-+
T Consensus 198 glkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk 245 (772)
T KOG0999|consen 198 GLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK 245 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555565655555544443 4568888888888766533
No 228
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.64 E-value=92 Score=37.62 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=15.1
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhh
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (812)
.+++..+..|+--|+.++..++.+++.
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665555555543
No 229
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.59 E-value=58 Score=35.31 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 003536 282 RVVMLEMERSSLESSLKELESKLSISQEDV 311 (812)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (812)
.+..++.+-+.+++-|+++..|...++...
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554444444
No 230
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=85.22 E-value=54 Score=34.60 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=62.8
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHH---HHHHHHHHHHHhhchhhHHHHHHHH-H
Q 003536 337 KATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM---QQKMKLLEERLQRSDEEIHSYVQLY-Q 412 (812)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~ 412 (812)
.+..--.+=.-+++..|.++..+++.++.++...... .++|+++.+.-+ ++++.....++...-.-|..-+.-+ .
T Consensus 110 svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~-~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~ 188 (224)
T cd07623 110 AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG-RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEK 188 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444577888888888888888776665432 356776555544 6777778888888887777777666 5
Q ss_pred HHHHHHHHHHHhhHHhhhh
Q 003536 413 ESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~ 431 (812)
+-+.+|..+|...-+..-.
T Consensus 189 erv~dfk~~l~~~le~~i~ 207 (224)
T cd07623 189 NRVKDFKDIIIKYLESLLN 207 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888887776665443
No 231
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.19 E-value=49 Score=35.08 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=25.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003536 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSL 425 (812)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (812)
-.|+.|...+.||-...+-++..+..+|+.|.+.
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456667888888888888888888888877653
No 232
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.16 E-value=8.5 Score=40.89 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 003536 160 DLHKILQEKEALQGEINAL 178 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (812)
.+.....+++.|+.+|+.+
T Consensus 28 ~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666543
No 233
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=97 Score=37.41 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=67.8
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcc
Q 003536 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (812)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (812)
..+-+.|+.+|.+|-..|.+|-..+--||+ .+.++||+. +
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAe--yGL~lLeeK-~------------------------------------- 46 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAE--YGLELLEEK-E------------------------------------- 46 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-H-------------------------------------
Confidence 456677888888888888887665555555 455666432 1
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (812)
.|-+.|+.|..|--+.+..|+.+|+.+-...-.-.++. +++.|-++|+.|-..=+. =+.++-.|+-|-|
T Consensus 47 --~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~-------yl~kI~eleneLK 117 (772)
T KOG0999|consen 47 --DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEY-------YLQKILELENELK 117 (772)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence 23333444444444444455555555544444444433 346666776544322111 2233444555555
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 003536 323 DLYEKVENLQGLLAKATK 340 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (812)
.+-..+++.|.=.++.++
T Consensus 118 q~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 565666666655555443
No 234
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=84.99 E-value=34 Score=36.32 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=71.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
++...++.++.|.-.+=+.=..|-..|.... +.+..+.++ +....+.++..+..+|... ..++.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v---~~l~~~~~~---~~~~~K~~~~~~~k~qk~~----------~~~~~ 120 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEA---EKLEEFREK---QKEERKKTEDIMKRSQKNK----------KELYK 120 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 5666677777776665555444444444321 112222211 2333344443333333222 13556
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh--hHHHHHHHHHHHHHHhHh--------hhhhhchHHHHHHHHHHHHHHHHHHHH
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQ--NQELRKKVDKLEESLDEA--------NIYKLSSEKMQQYNELMQQKMKLLEER 396 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (812)
+|+..+.--..+-+.++.|..-+.. +.--.++++|++.-+..+ +-|+...++++.++..-.+++...=..
T Consensus 121 ~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~ 200 (239)
T cd07647 121 KTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555555554322111 101134556666555554 456667777777777777777766666
Q ss_pred Hhhchhh
Q 003536 397 LQRSDEE 403 (812)
Q Consensus 397 ~~~~~~~ 403 (812)
||.-+++
T Consensus 201 ~Q~lEe~ 207 (239)
T cd07647 201 FQNMEEE 207 (239)
T ss_pred HHHHHHH
Confidence 6666654
No 235
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.46 E-value=22 Score=39.69 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=35.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL-YEK 327 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (812)
..||+.+|++=..+..+|+..+.++.+ ++.|.+.+++.+.+...+....++.+.++....-+|+.| -..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e----------~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEE----------LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345555554444444444444444332 233344444444444444444444444444444555555 344
Q ss_pred HHHHHHHHH
Q 003536 328 VENLQGLLA 336 (812)
Q Consensus 328 ~~~~~~~~~ 336 (812)
|.+|++.+.
T Consensus 273 i~~Lk~~~~ 281 (312)
T smart00787 273 IEKLKEQLK 281 (312)
T ss_pred HHHHHHHHH
Confidence 444444433
No 236
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=46 Score=41.81 Aligned_cols=233 Identities=21% Similarity=0.260 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc-ccCcccchhhhhcCCCCcccc
Q 003536 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-GVSEHSELDVFANQNEPANED 237 (812)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (812)
.+.++.++.+..++..+..||-|++-..+.+-- .-.+++.+-.++.-. ..+.....+ ......|
T Consensus 557 q~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e----------~~se~e~~l~~l~l~~el~~~~~~d-----~ls~mkd 621 (984)
T COG4717 557 QHWQQLRKALDQLEAAYEALEGRFAAAEAAMAE----------WQSEWEEALDELGLSRELSPEQQLD-----ILSTMKD 621 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHhccCCccCCcHHHHH-----HHHHHHH
Confidence 467788888888888888888888776554321 223445555555433 111111111 0111222
Q ss_pred cccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 003536 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQEDVAKLST 316 (812)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (812)
...-+-.+|.|..+..-|++|-...-+-.+.|-+.+ +....+.+.. -.++=|...+ ..-|..-.++|.+..--.-
T Consensus 622 ~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e---~~~Ee~r~~le~~~~~t~E 697 (984)
T COG4717 622 LKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAE---LQKEEARLALEGNIERTKE 697 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHH---HhhHHHHHHHhhhHHHHHH
Confidence 222334455555555555555544444444444433 2222222211 1111111100 0011111222222221111
Q ss_pred chhhhhhHHHH-HHHHHHHHHHHhhhhh----hHHHHhhhhHHHHHHHHHHHHHHh--HhhhhhhchHHHHHHHHHHHHH
Q 003536 317 LKVECKDLYEK-VENLQGLLAKATKQAD----QAISVLQQNQELRKKVDKLEESLD--EANIYKLSSEKMQQYNELMQQK 389 (812)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 389 (812)
+..+-++=-++ =..+-+|+|+++---+ +|+.--+|.++...++..+++.|+ -+.-|.++.+..|..-- ...
T Consensus 698 l~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E 775 (984)
T COG4717 698 LNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEE 775 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHH
Confidence 11111111111 2245678887764433 466778999999999999999999 67788888875543322 344
Q ss_pred HHHHHHHHhhchhh---HHHHHHHHH
Q 003536 390 MKLLEERLQRSDEE---IHSYVQLYQ 412 (812)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~~~~~~~ 412 (812)
..++|+++..-++| ++++|..-.
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~~~~ 801 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVAALS 801 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667666666654 667665543
No 237
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.34 E-value=1.1e+02 Score=37.61 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch--hh----HHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHH
Q 003536 377 EKMQQYNELMQQKMKLLEERLQRSD--EE----IHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLL 450 (812)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lL 450 (812)
.+|..+.+.+|+++..+..+++-+. +. +-.++..|...+-+..+.++.+++--|..+ ...-.+|
T Consensus 308 s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea----------~srk~il 377 (660)
T KOG4302|consen 308 SNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEA----------LSRKEIL 377 (660)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 3466677888888999988888887 44 445667777778888877777776655422 2445788
Q ss_pred hcchhhh
Q 003536 451 LIIDGWL 457 (812)
Q Consensus 451 L~id~~~ 457 (812)
-+||.|.
T Consensus 378 ~~ve~W~ 384 (660)
T KOG4302|consen 378 ERVEKWE 384 (660)
T ss_pred HHHHHHH
Confidence 8999997
No 238
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.26 E-value=1.2e+02 Score=37.61 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=54.2
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh--hhhhh--hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 003536 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS--VKDAD--ERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (812)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (812)
.+-..||.|-..|+.+.+.|...-.-++.||.+|.. +++++ ...-.|.-|...+-....++-..+...|+|+....
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK 526 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456679999999999999999888899999999985 34433 33445555655555555566566666778776543
No 239
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.21 E-value=44 Score=38.69 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=19.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (812)
.+..+++.++..-..++..+..|++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777667777777777666654
No 240
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.13 E-value=1.4e+02 Score=39.14 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHHHC
Q 003536 527 VGGLGDVVAGLGKALQKK 544 (812)
Q Consensus 527 vGGLGdVV~~LsKALqkl 544 (812)
.+||..-+.++-+.+..+
T Consensus 1733 L~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1733 LAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhHHHHHHHHHHHHhhh
Confidence 356666666666665543
No 241
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.13 E-value=47 Score=34.76 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=18.8
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHh
Q 003536 244 EIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (812)
.+|.-.+|+.+||+.-+-.++....+...+
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777776666666665555544
No 242
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.72 E-value=9.3 Score=37.14 Aligned_cols=56 Identities=38% Similarity=0.457 Sum_probs=35.0
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhh
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKL 304 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (812)
.++|..+|+|.-.++..|..|+++.......= ..-...+.++..|+..+.+++.++
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777655432 222334444445555555555443
No 243
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.27 E-value=21 Score=41.42 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=40.9
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 003536 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (812)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (812)
.-++.-|-.+|++.|+-|--+..++.+.-.++.++-+..+++-..++.|+...
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888777777777777776554
No 244
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.20 E-value=15 Score=45.07 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHH----HHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchh
Q 003536 380 QQYNELMQQKMKLLEERLQRSDEEIH----SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDG 455 (812)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~ 455 (812)
++..+.||.++...+.||+++.++|- +|..-+.....|.+.-|+.+-+--.+ +++--.+-=|+|--+|+=.++.
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~r--L~~L~~D~Lpef~arF~~llN~ 852 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLAR--LQTLTEDALPEFLARFQELLNR 852 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHH--HHhhhhhhHHHHHHHHHHHhhh
Confidence 56778899999999999999999974 44455555555555555555544443 4444444445676666543343
Q ss_pred h
Q 003536 456 W 456 (812)
Q Consensus 456 ~ 456 (812)
+
T Consensus 853 ~ 853 (1104)
T COG4913 853 S 853 (1104)
T ss_pred c
Confidence 3
No 245
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=83.14 E-value=28 Score=33.93 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=26.8
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (812)
..++..+-++-..+.++++..+..+..+......+...
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 34566666677778888888888888877776665543
No 246
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.06 E-value=1.6e+02 Score=38.19 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=20.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (812)
+...++..++.+-..++..+.....++..+.....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (1047)
T PRK10246 294 PHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRA 328 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666555443333
No 247
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=82.98 E-value=6.5 Score=41.66 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=87.4
Q ss_pred CccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHH
Q 003536 125 GEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLED 204 (812)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (812)
..++++-|-|-+++.|.++ +| -+++.+.+-+.-|+..+. .+| -..-
T Consensus 56 ~~Gf~~kQAETIt~aiT~v------~n----dsl~~vsk~~vtkaqq~~----v~~--------------------QQ~~ 101 (220)
T KOG3156|consen 56 AAGFDSKQAETITSAITTV------LN----DSLETVSKELVTKAQQEK----VSY--------------------QQKV 101 (220)
T ss_pred HcCCChhhHHHHHHHHHHH------Hc----ccHHHHHHHHHHHHHHHH----HHH--------------------HHHH
Confidence 4567778888888888763 33 357777776665554432 111 2345
Q ss_pred HHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH-
Q 003536 205 QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV- 283 (812)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (812)
.+-|+|.+|-+ ..-.||..|+.||-.||+||+.+|+.|.+--.+.-.=
T Consensus 102 ~f~kiRsel~S-------------------------------~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~ 150 (220)
T KOG3156|consen 102 DFAKIRSELVS-------------------------------IERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEF 150 (220)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 56788888876 3356899999999999999999999997654332211
Q ss_pred ---HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 003536 284 ---VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (812)
Q Consensus 284 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (812)
.-|||=|--=+++-.+|--+ +++ ..+=..|.+|..+++.+.-|.-|.
T Consensus 151 rLdLNLEkgr~~d~~~~~~l~~~---------e~s------~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 151 RLDLNLEKGRIKDESSSHDLQIK---------EIS------TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred eeecchhhccccchhhhcchhHh---------HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344332222222222222 111 123367888888888877776654
No 248
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.85 E-value=71 Score=34.10 Aligned_cols=155 Identities=21% Similarity=0.342 Sum_probs=88.3
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 003536 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (812)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (812)
+++.|..|...|. +++-.|+-...+=.+.++..+..|..++..--.+ +...++.-+..|-+++..|...+..-..+
T Consensus 39 i~e~i~~Le~~l~--~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 39 IKEQIQKLEKALE--AEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3555555555555566777777776555433222 44555555667777777777777665544
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 003536 342 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (812)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (812)
-.+.+ -..++.|.++|..|.+.++.-.......+ .+=++.|++-.......|..-.......+.++...
T Consensus 115 r~~~i--e~~~~~l~~~l~~l~~~~~~Er~~R~erE---------~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 115 RPQDI--EELNQELVRELNELQEAFENERNEREERE---------ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34567788888888888877665554443 11233344444444444444444455555666666
Q ss_pred HHhhHHhhhh
Q 003536 422 LHSLKEESKK 431 (812)
Q Consensus 422 ~~~~~~~~~~ 431 (812)
|+.++....+
T Consensus 184 le~~~~~~~~ 193 (247)
T PF06705_consen 184 LEEVKRRREK 193 (247)
T ss_pred HHHHHHHHhh
Confidence 6666654433
No 249
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.40 E-value=0.41 Score=59.52 Aligned_cols=61 Identities=26% Similarity=0.468 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSIS 307 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (812)
.+...+..++.+|..|.++|.-|...++. |.+-+.....||.|...|...|.|+|..+...
T Consensus 423 e~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~ 487 (859)
T PF01576_consen 423 ELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE 487 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888777665 34445555556666666655666665555443
No 250
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.24 E-value=41 Score=42.03 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (812)
+..+..+|..++.||..|.+.++ +-++-|..|.++++..++.+.+|-.+|...+-+. ++||||---+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~----------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken---~~Lkye~~~~ 160 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQ----------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN---SSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44668888999999988877653 3345566677777777777777777776665443 4567776555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 003536 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (812)
.+.+|---.=.+--++-||-| --|+.+=-+||-|||+--
T Consensus 161 ~keleir~~E~~~~~~~ae~a---~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAA---SKQHLESVKKIAKLEAEC 199 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 555543332233333333333 567778889999999854
No 251
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.62 E-value=39 Score=40.52 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=53.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 003536 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (812)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (812)
-.-.|..||..|-.||.-|+.... .++..--.+.|.|-+.+...|.+-.+..+.++ .|.+.||+.++.
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~--~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e----------~ei~kl~~e~~e 124 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVG--RETSGIKAKYEAELATARKLLDETARERAKLE----------IEITKLREELKE 124 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHH
Confidence 344577888888888888876543 34444445666666666666666655554444 444556777777
Q ss_pred HHHHHHHHhhhhhhH
Q 003536 331 LQGLLAKATKQADQA 345 (812)
Q Consensus 331 ~~~~~~~~~~~~~~~ 345 (812)
|...++++++.+..+
T Consensus 125 lr~~~~~~~k~~~~~ 139 (546)
T KOG0977|consen 125 LRKKLEKAEKERRGA 139 (546)
T ss_pred HHHHHHHHHHHHhhh
Confidence 777777766655544
No 252
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.17 E-value=30 Score=38.02 Aligned_cols=135 Identities=21% Similarity=0.313 Sum_probs=78.9
Q ss_pred ccchhHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHH
Q 003536 130 TSQLDNLISMIRNAEK-NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQK 208 (812)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (812)
+.=|+=|.+.|+-..+ ++.-|...++ ..+..++...|..+=++.=|.++|-|.-...+...+ .+..+.+-+.
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl---~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~----~~~~e~eke~ 197 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESDL---KEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ----HETREEEKEE 197 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3446677777877766 4676776664 456677888888888888888888774221111111 1122222222
Q ss_pred HHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHh
Q 003536 209 LQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEM 288 (812)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (812)
.+..|. ..-.|++.+.+|=......+..++. .++++-.|+..|+.
T Consensus 198 ~~r~l~--------------------------------~~~~ELe~~~EeL~~~Eke~~e~~~---~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 198 KDRKLE--------------------------------LKKEELEELEEELKQKEKEVKEIKE---RITEMKGRLGELEM 242 (269)
T ss_pred HHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 222221 2234444444443333333333443 34677888999999
Q ss_pred hhhhHHhhHHHHHhhhhc
Q 003536 289 ERSSLESSLKELESKLSI 306 (812)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ 306 (812)
|++-|...+..+.||.--
T Consensus 243 ~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 243 ESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887776543
No 253
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.04 E-value=28 Score=36.15 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=62.6
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---------HHHhhhhHHHHHHHHH
Q 003536 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA---------ISVLQQNQELRKKVDK 361 (812)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 361 (812)
..|+..|+|||..+..+...+...-..+.. +-.+++.++....+-.++|..| ...|.+-.+++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~---le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKR---LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999998888888877766653 4555555555555555555555 3444444555555555
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003536 362 LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (812)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (812)
|+..+.. .....+.|...+..++.+++..-.+
T Consensus 103 l~~~~~~----------~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 103 LEQQLDQ----------AEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 3344556666666666666554443
No 254
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=80.74 E-value=6.7 Score=46.18 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCC
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNl 679 (812)
.|+.++++.+ ..=|+|=+||.|-.++| .+++.. ....++-|-.|.+
T Consensus 121 ~FA~~i~~~~----~~~d~vWVhDYhL~llp-~~LR~~----~~~~~IgfFlHiP 166 (487)
T TIGR02398 121 AFAEAACLEA----AEGATVWVHDYNLWLVP-GYIRQL----RPDLKIAFFHHTP 166 (487)
T ss_pred HHHHHHHHhc----CCCCEEEEecchhhHHH-HHHHHh----CCCCeEEEEeeCC
Confidence 4555554432 23489999999999984 445432 2467899999987
No 255
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.70 E-value=77 Score=36.13 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhHh-hhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003536 352 NQELRKKVDKLEESLDEA-NIYKLSSEKMQQYNELMQQKMKLLEERL 397 (812)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (812)
-++|+.++..++..|.+. ..|.-..-+++. ++.++..++..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~----l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKR----AQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHHH
Confidence 357888999999888885 457777776654 444444455444
No 256
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.94 E-value=1.4e+02 Score=36.30 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=20.7
Q ss_pred EEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEec
Q 003536 515 IHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (812)
Q Consensus 515 L~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItP 553 (812)
.+|=.|+--- .+|..+..|+..-+.|.+ .+.|.+||-
T Consensus 456 tlIFDEVD~G-IsG~~A~aVg~~L~~Ls~-~~QVl~VTH 492 (557)
T COG0497 456 TLIFDEVDTG-ISGRVAQAVGKKLRRLSE-HHQVLCVTH 492 (557)
T ss_pred eEEEecccCC-CChHHHHHHHHHHHHHhc-CceEEEEec
Confidence 3444676321 145555666655555553 478888873
No 257
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=79.61 E-value=45 Score=42.72 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=23.6
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHH
Q 003536 359 VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (812)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (812)
+++|+.+|.......---+.|-++|+++-+|-|..=
T Consensus 1287 l~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP 1322 (1439)
T PF12252_consen 1287 LDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYP 1322 (1439)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 566777777666555556667778887766655443
No 258
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=79.42 E-value=26 Score=39.43 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=30.1
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i 558 (812)
|||++=... +| -.-+-..+.+.|.++||+|.|.++.|+..
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~ 40 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDET 40 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchH
Confidence 677655432 22 35677889999999999999999998753
No 259
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.15 E-value=1.7e+02 Score=36.24 Aligned_cols=215 Identities=21% Similarity=0.315 Sum_probs=103.5
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccc-
Q 003536 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLS- 315 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~- 315 (812)
.|..+.+|-|.||.|--+||+.+..---. ++.++-||-|..|--|-..| ..-++.|-.|.-.+..=+.|++
T Consensus 417 Kvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge 495 (961)
T KOG4673|consen 417 KVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGE 495 (961)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 35556677777777777666655431111 46778888887665443322 1223333333322222122221
Q ss_pred -------------cc---hhh-hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH-------hhh
Q 003536 316 -------------TL---KVE-CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE-------ANI 371 (812)
Q Consensus 316 -------------~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 371 (812)
.. |-| -|.+.|-|+.+++.+.+ |-+-..-.=..-.+|+.+.-.+++++.+ +|.
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r---q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR---QKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 11 111 12346666777776665 2222211111112333333333343333 333
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHh
Q 003536 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL 451 (812)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL 451 (812)
-| -+..++--.-+-|+|.-|-.-|++..+..---=+.+++.+.+.|.-|..-..-. ++.....| +-..-||.
T Consensus 573 lk--Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~-----eel~q~v~-~TTrPLlR 644 (961)
T KOG4673|consen 573 LK--QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRC-----EELIQQVP-ETTRPLLR 644 (961)
T ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcc-ccccHHHH
Confidence 33 223333444455666666666776666555555666777777777665332222 22222232 22334565
Q ss_pred cchhhhHHhhcCcHHHHHHHHHHHhhc
Q 003536 452 IIDGWLLEKKLSTSEAKLLREMVWKRN 478 (812)
Q Consensus 452 ~id~~~l~~~~~~~e~~~l~~~v~~~~ 478 (812)
-|..+. ..+.-+...|+|.
T Consensus 645 QIE~lQ--------~tl~~~~tawere 663 (961)
T KOG4673|consen 645 QIEALQ--------ETLSKAATAWERE 663 (961)
T ss_pred HHHHHH--------HHHhhhhhHHHHH
Confidence 576664 5556666778773
No 260
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=79.10 E-value=23 Score=38.44 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=34.1
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
|+|++|+-=.+|++ .||++.-+.+|.+.+.+.-+.|..|++.
T Consensus 1 ~~V~ll~EGtYPyv-~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPYV-RGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCCC-CCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 79999976679994 8999999999999997755555556665
No 261
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=79.04 E-value=83 Score=32.50 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHHHH---HHHHHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHH
Q 003536 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDT 421 (812)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 421 (812)
..+.+.+.+.+.+++.++.++.+... +-+.+++++ ..+.+++++..++.++....+.+..-++-|. +-+.+|+.+
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777666665 334455543 3445566777777777777777777665553 456677777
Q ss_pred HHhhHH
Q 003536 422 LHSLKE 427 (812)
Q Consensus 422 ~~~~~~ 427 (812)
|....+
T Consensus 212 l~~~~~ 217 (236)
T PF09325_consen 212 LEEYAE 217 (236)
T ss_pred HHHHHH
Confidence 665543
No 262
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.94 E-value=35 Score=39.93 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=40.0
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 003536 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMK 391 (812)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (812)
++|...+.....+-.++.+|+..+..+.....-+..-+ +.++.|++++...|.+-. .-..+|++--+..+.|+|
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~---~q~q~k~~k~~kel~~~~---E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL---QQLQTKLKKCQKELKEER---EENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHH
Confidence 33444444333444444444443333322222222223 345556666655554432 223445555566777888
Q ss_pred HHHHHHhhc
Q 003536 392 LLEERLQRS 400 (812)
Q Consensus 392 ~~~~~~~~~ 400 (812)
.+|+|..+.
T Consensus 421 ~~~e~~~~~ 429 (493)
T KOG0804|consen 421 ELEEREKEA 429 (493)
T ss_pred HHHHHHHHH
Confidence 888776543
No 263
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.90 E-value=85 Score=40.39 Aligned_cols=143 Identities=20% Similarity=0.291 Sum_probs=83.5
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-----
Q 003536 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK----- 313 (812)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (812)
+.+|.|-..+..++.+=-.+|.++..++.+|.. ..+...++..++++-...+..+++|+.+.-..+..|-+
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ 762 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRR 762 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566666666666655666666655555533 33455566677777777788888888877777665532
Q ss_pred --cccchhhhhhHH----HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHH
Q 003536 314 --LSTLKVECKDLY----EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (812)
Q Consensus 314 --~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (812)
+.-..||=..+. .|.-.++..++++.+|.| +..| +|.+++|.+++.+++..... .+.+++-.+.+-
T Consensus 763 igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~----fe~~-~d~~~~ve~~~~~v~~~~~~---~~~~~~~e~~~~ 834 (1141)
T KOG0018|consen 763 IGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD----FEKQ-KDTQRRVERWERSVEDLEKE---IEGLKKDEEAAE 834 (1141)
T ss_pred cCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----heec-ccHHHHHHHHHHHHHHHHHh---HHhhHHHHHHHH
Confidence 112233322332 233334455555555543 4445 99999999999998876543 344444444454
Q ss_pred HHHHHH
Q 003536 388 QKMKLL 393 (812)
Q Consensus 388 ~~~~~~ 393 (812)
..+...
T Consensus 835 k~i~e~ 840 (1141)
T KOG0018|consen 835 KIIAEI 840 (1141)
T ss_pred HHHhhH
Confidence 444444
No 264
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.73 E-value=44 Score=41.37 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=68.7
Q ss_pred HHhhhhhhHHHhhh----hchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcc
Q 003536 169 EALQGEINALEMRL----AETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (812)
Q Consensus 169 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (812)
.+||.++..+..-+ +|.|-=..+...-+-..+.+|.|...||.||..--..|-
T Consensus 37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~----------------------- 93 (717)
T PF09730_consen 37 LELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA----------------------- 93 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 34444444433333 333333445555566677888888888888876433321
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (812)
.|-.+++.|.+||.+|...+-.||+-=.++-..---+..|+.|-..|.+.|.|+.
T Consensus 94 --rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 94 --RLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred --HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999988888777666555556666666666666655443
No 265
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.06 E-value=56 Score=41.89 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=55.9
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH
Q 003536 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK 358 (812)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (812)
..++....|+|+......|++||-+ +++++..|.. -.+.+.-.+..+.+|..+
T Consensus 432 see~y~~~e~e~~~~~~~ieele~e------------------------l~~~~~~l~~---~~e~~~~~~~~~~~l~~~ 484 (1041)
T KOG0243|consen 432 SEERYTQEEKEKKEMAEQIEELEEE------------------------LENLEKQLKD---LTELYMNQLEIKELLKEE 484 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHH---HHHHHhhHHHHHHHHHHH
Confidence 4566666666776666666666543 3333333333 222233345555666666
Q ss_pred HHHHHHHHhHhhhhhhch-HHHHHHHHH------HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 003536 359 VDKLEESLDEANIYKLSS-EKMQQYNEL------MQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (812)
.+++++-|..-+-.=.+- +.+++.+.. .-++.+..|+-++.-..+++.+++--+..+.-|..-|+...
T Consensus 485 ~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 485 KEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 666665555443322221 122222222 12233334444444455555555444444444444444333
No 266
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.02 E-value=1.9e+02 Score=36.10 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhh-----HhhhHHHHHHHHHHhhhc
Q 003536 163 KILQEKEALQGEINALEMRLAETDARIRVAAQEKIH-----VELLEDQLQKLQHELTHR 216 (812)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 216 (812)
-+-.|..-|+.++..|-..|.|. .|+|--++.... ...=-+|--.||.||.+.
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~-~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEA-ARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555554 334333322111 001113334678888884
No 267
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.86 E-value=1.6e+02 Score=37.55 Aligned_cols=267 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HhhhhhhHHHhhhhchhhhhhHhhhh---hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccc
Q 003536 170 ALQGEINALEMRLAETDARIRVAAQE---KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (812)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (812)
+.|...|+|.--.-.-.-+.|..++- .+++..+-.|+++|+.+|......
T Consensus 300 n~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~--------------------------- 352 (913)
T KOG0244|consen 300 NAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGD--------------------------- 352 (913)
T ss_pred hhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh------------------hHHHHHHhhhhh----------------
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD------------------ERVVMLEMERSS---------------- 292 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---------------- 292 (812)
.+..|+++|++||+.|..++..+-.++.+.-.+- .++-..-..-..
T Consensus 353 ~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 432 (913)
T KOG0244|consen 353 ELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKP 432 (913)
T ss_pred cchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcc
Q ss_pred ---------------------------------------HHhhHHHHHhhhhcchhhhhcccc-----------------
Q 003536 293 ---------------------------------------LESSLKELESKLSISQEDVAKLST----------------- 316 (812)
Q Consensus 293 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----------------- 316 (812)
|...|++++.++..-++-+-+...
T Consensus 433 ~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~ 512 (913)
T KOG0244|consen 433 LEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSG 512 (913)
T ss_pred ccccccccccccccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhh
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHhh-hhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHH
Q 003536 317 -LKVECKDLYEKVENLQGLLAKATK-QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (812)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (812)
|..|-.++...-+.|..-|...+. .+-.+=---++-++|+.++++|+.-|.+-.----...+.....-.+.+.+.-++
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k 592 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAK 592 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhhHHhhcCcHHHHHHHHHH
Q 003536 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMV 474 (812)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~l~~~~~~~e~~~l~~~v 474 (812)
...-+--..+..--..+++.-..--..+.-+|+..-++..++|...+-.....-+|. -..++|+.+.+
T Consensus 593 ~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~----------~kt~eas~~~k-- 660 (913)
T KOG0244|consen 593 GQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQ----------RKTEEASAANK-- 660 (913)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHH----------HHHHHHHHHHH--
Q ss_pred H
Q 003536 475 W 475 (812)
Q Consensus 475 ~ 475 (812)
|
T Consensus 661 r 661 (913)
T KOG0244|consen 661 R 661 (913)
T ss_pred H
No 268
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=77.71 E-value=1e+02 Score=36.30 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=54.5
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh----------cch
Q 003536 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS----------ISQ 308 (812)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 308 (812)
+..++.+|.+.+||..+|-|--.-++|++.+..+ +-.|+.+--.+|+..++||+... +++
T Consensus 298 ~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q----------~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~ 367 (554)
T KOG4677|consen 298 IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQ----------YTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASI 367 (554)
T ss_pred cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhh
Confidence 4567779999999999999999999999887654 34455566666777777776553 345
Q ss_pred hhhhccccchhhhhh
Q 003536 309 EDVAKLSTLKVECKD 323 (812)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (812)
..+-.+-++++||--
T Consensus 368 ~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 368 LNMPLVLTLFYECFY 382 (554)
T ss_pred hhchHHHHHHHHHHH
Confidence 555556677888843
No 269
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.00 E-value=1.5e+02 Score=37.47 Aligned_cols=69 Identities=32% Similarity=0.398 Sum_probs=43.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh------------------------hhhhhHHHHHHhhhhhHHhhHHHHHh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV------------------------KDADERVVMLEMERSSLESSLKELES 302 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (812)
+.-+|++.++.||-.|+++-+-+-.+|..- +...+-+..+-++-+...+++.++++
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~ 813 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQS 813 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 345778888888887776665555555221 12234555566666667777777877
Q ss_pred hhhcchhhhhccc
Q 003536 303 KLSISQEDVAKLS 315 (812)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (812)
++..-+++...+-
T Consensus 814 e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 814 ELTQLKEQIQTLL 826 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 270
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=76.72 E-value=7.9 Score=40.60 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=33.8
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc-chhhhhccccchhhhhhH
Q 003536 273 LNSVKDADERVVMLEMERSSLESSLKELESKLSI-SQEDVAKLSTLKVECKDL 324 (812)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 324 (812)
.+....+|--.+.|++|-+.|++.|...|..-.. ...+-++...++.|...|
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL 140 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Confidence 3445677778888998888888888887777666 333334445555553333
No 271
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=76.70 E-value=47 Score=37.68 Aligned_cols=111 Identities=17% Similarity=0.060 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCe-EEEEecCCCcccccccccccceeEEEeeecCCceeeeEEEEEeeCCeeEEEeCCCCCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHL-VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGhe-V~VItPkY~~i~~~~i~~L~gv~V~V~s~fdG~~~~~~Vw~~~v~GV~VYfLd~~~ps 605 (812)
+||-=..+..|+++|.++|++ |.++.-.++.. . .+ ....++++++|+..
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e-~----~l----------------------~~~~~~~~~~I~~~--- 59 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWEQVIVLGTGDGLE-A----FL----------------------VKQYGIEFELIPSG--- 59 (357)
T ss_pred CccchhHHHHHHHHHHhhCccEEEEecccccce-e----ee----------------------ccccCceEEEEecc---
Confidence 577777788999999999996 55553332211 0 00 01235667777642
Q ss_pred CCCcCCCCCCCCchHHHHHHHHHHHH---HHHHHcCCCCCEEEEc-CcccchHHHHHHHHhccCCCCCCcEEEEecCCc
Q 003536 606 KFFWRGQFYGEHDDFRRFSFFSRAAL---ELLLQAGKQPDIIHCH-DWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE 680 (812)
Q Consensus 606 ~~F~R~~lYG~~Dd~~RfifFsrAaL---elLkklg~kPDIIH~H-DWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNle 680 (812)
.+.|...+. +.....++.++.. +.|+ ..+||+|-+= ...++++ ++... +.++|++..--|..
T Consensus 60 -~~~~~~~~~---~~~~~~~~~~~~~~a~~il~--~~kPd~vig~Ggyvs~P~--~~Aa~-----~~~iPv~ihEqn~~ 125 (357)
T COG0707 60 -GLRRKGSLK---LLKAPFKLLKGVLQARKILK--KLKPDVVIGTGGYVSGPV--GIAAK-----LLGIPVIIHEQNAV 125 (357)
T ss_pred -cccccCcHH---HHHHHHHHHHHHHHHHHHHH--HcCCCEEEecCCccccHH--HHHHH-----hCCCCEEEEecCCC
Confidence 122222221 2222233444443 3344 4699998884 4455554 44332 25799987776664
No 272
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.59 E-value=5.8 Score=39.81 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=41.5
Q ss_pred CcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh------hhHHHHHHhhhhhHHhhHHHHHh
Q 003536 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA------DERVVMLEMERSSLESSLKELES 302 (812)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 302 (812)
...+..+..++..|++|...|+.++..|+++|...... ...+..|+.|...|++.|..|.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888888888888888876533 34445555555555555555543
No 273
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=76.53 E-value=1.4e+02 Score=33.85 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=102.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCccc
Q 003536 143 AEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHS 222 (812)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (812)
+|+-|-.|-+--++..+..-+++.+-.-||.+ -+|..+.++-.|.-..+++.-+-|+.|=.||-.-
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k--------~~t~~kek~~~Q~l~kt~larsKLeelCRelQr~------ 88 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVLQVK--------DLTEKKEKRNNQILLKTELARSKLEELCRELQRA------ 88 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45555566565555555555555555444443 2455566666776666677777777666665431
Q ss_pred chhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHH
Q 003536 223 ELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLK 298 (812)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 298 (812)
..++|+||+. .+| ..|-+| .-+..+|+
T Consensus 89 -----------------------------nk~~keE~~~------q~k--------------~eEerRkea~~~fqvtL~ 119 (391)
T KOG1850|consen 89 -----------------------------NKQTKEEACA------QMK--------------KEEERRKEAVEQFQVTLK 119 (391)
T ss_pred -----------------------------HHHHHHHHHH------HHH--------------HHHHHHHHHHHHHHhHHH
Confidence 1244555542 111 111111 12566777
Q ss_pred HHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHhhhhHHHHHHHHH-HHHHHhHhhhhhh
Q 003536 299 ELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVLQQNQELRKKVDK-LEESLDEANIYKL 374 (812)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 374 (812)
|++..|+.-..-..+|..--. .|-+|.-.|-..+..-.++.|+-+ -+-.|..+-+..+++ |-+-++++.+-.-
T Consensus 120 diqktla~~~~~n~klre~Ni---eL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~ 196 (391)
T KOG1850|consen 120 DIQKTLAEGRSKNDKLREDNI---ELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQEK 196 (391)
T ss_pred HHHHHHHhcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777655544444433222 255555444444443333333221 122222222222222 2333444433221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 003536 375 SSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (812)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (812)
.+ ..-..++-|+.. +...........++-+|.+-..|||.+|.+
T Consensus 197 ~~----glEKd~lak~~~--e~~~~~e~qlK~ql~lY~aKyeefq~tl~K 240 (391)
T KOG1850|consen 197 KS----GLEKDELAKIML--EEMKQVEGQLKEQLALYMAKYEEFQTTLAK 240 (391)
T ss_pred Hh----hhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122222221 223345566777888999999999999875
No 274
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.44 E-value=6 Score=41.66 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=12.9
Q ss_pred HHhhhhhhHHHhhhhchhhh
Q 003536 169 EALQGEINALEMRLAETDAR 188 (812)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (812)
.+||.++..|+.+|++.+..
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35666677777777776544
No 275
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.31 E-value=61 Score=34.73 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=55.5
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 003536 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (812)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (812)
.-.|+-.++|+++.|..+-.-+.++-..+.. +..+++.++...++-.++|..| +...|.+|-+++=.=+.+|+
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~---~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQ---LERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHH
Confidence 3568889999999999999988888888774 8889999999888888888888 55566666555544444443
No 276
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.14 E-value=1.3e+02 Score=32.70 Aligned_cols=173 Identities=15% Similarity=0.263 Sum_probs=77.2
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHh----hHHHHHhhhhcchhhhhccc-cchh
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLES----SLKELESKLSISQEDVAKLS-TLKV 319 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (812)
...+......+..+..+|..|+..+++. .+-+.++..|..|..++.. .+++|.+++. ...-+ ... +-.
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~-e~~~~~~- 164 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTV-EVDQFRS- 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-cccce-eeccccc-
Confidence 3344444566667777777777666543 2334556666666666543 4555555443 11000 111 111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh--h--hhchHHHHHHHHHHHHHHHHHHH
Q 003536 320 ECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--Y--KLSSEKMQQYNELMQQKMKLLEE 395 (812)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 395 (812)
.+|-..+..+++-.+... ++.- -+-..-.+.|+..+.......+- - +--...++.-..-|+.++..++.
T Consensus 165 --~dL~~~L~eiR~~ye~~~---~~~~--~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 165 --SDLSAALREIRAQYEEIA---QKNR--EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp ----HHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchhhhhhHHHHHHHHH---hhhh--hhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 123333333333222211 1100 01112234455554443332111 0 11111122223344444555555
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
+.......|...-.-|...+..|+..+..+..+-..
T Consensus 238 ~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 238 KNASLERQLRELEQRLDEEREEYQAEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 555555555555567788888888888888776655
No 277
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=74.94 E-value=41 Score=38.14 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
+||+|.+-+.++++|.+.||+|+++.+.
T Consensus 104 iGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 104 VGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred EcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 3889999999999999999999999764
No 278
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.85 E-value=29 Score=35.11 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc
Q 003536 275 SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK 313 (812)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (812)
++.+...++..+++|...++..+.++++.+...+.+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666655555444433
No 279
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=74.59 E-value=1.3e+02 Score=32.41 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHH---HHHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHH
Q 003536 347 SVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLY-QESVKEFQDTL 422 (812)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 422 (812)
-++++.|..+.-+.+.++.++...- ...++|+++..+- .+.++...+..|+...+-|..-|.-+ .+-+.+|..+|
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~-~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQY-ANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555444321 1236777766544 45677777777777777777777666 55677777777
Q ss_pred HhhHHhhhhhccCCCCCCCCHHHHHHHH
Q 003536 423 HSLKEESKKRAVHEPVDDMPWEFWSRLL 450 (812)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~m~~~~~~~lL 450 (812)
....+..-....+ | -+.|-.||
T Consensus 209 ~~fles~ie~qke-----~-ie~We~f~ 230 (234)
T cd07664 209 IKYLESLVQTQQQ-----L-IKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHH-----H-HHHHHHhh
Confidence 6655443321111 1 36677766
No 280
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.85 E-value=1.6e+02 Score=35.25 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=27.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh---hHHHHHHhhhhhHHh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD---ERVVMLEMERSSLES 295 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 295 (812)
.+..++..++++...+...++.++.++.++...+ .--..|+.|+..|..
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n 223 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSN 223 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhC
Confidence 3455666666666666677777776666555433 223445555555443
No 281
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.22 E-value=43 Score=37.47 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=29.4
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (812)
...|...++.|+.+...|..+++-+..-+. +..++...|..|...|.+...+++
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKP---KLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556666666666666666655543322 333455555555555555555544
No 282
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.19 E-value=1.3e+02 Score=31.94 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 003536 326 EKVENLQGLLAKATKQADQA 345 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~ 345 (812)
.|+..++.-|++|..+++.+
T Consensus 120 rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444444555554444443
No 283
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.08 E-value=87 Score=38.85 Aligned_cols=48 Identities=15% Similarity=0.394 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHH-HH---HHHHHHHHHHhhHHhhhh
Q 003536 383 NELMQQKMKLLEERLQRSDEEIHSYVQLY-QE---SVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 431 (812)
-..|+..+|.-||+++....|++ .++-| ++ .++.....|..+.+.+..
T Consensus 554 ~~~lr~elk~kee~~~~~e~~~~-~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 554 LKKLRRELKQKEEQIRELESELQ-ELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777773 35566 33 455555666666665554
No 284
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.04 E-value=1.2e+02 Score=39.03 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 003536 376 SEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (812)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (812)
-.++-++++++.|| ...-++..-.++.--++.|++-=-+|.+
T Consensus 407 kr~~~~~~~~~~~k---~~~~l~~~~~d~~dAy~wlrenr~~FK~ 448 (1072)
T KOG0979|consen 407 KRKLKQNSDLNRQK---RYRVLRQGSSDAYDAYQWLRENRSEFKD 448 (1072)
T ss_pred HHHHHHHhhhhhhh---HHHHhccCchHHHHHHHHHHHCHHHhcc
Confidence 34566788899998 4555666777888889999988778876
No 285
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=72.83 E-value=1.3e+02 Score=31.52 Aligned_cols=147 Identities=29% Similarity=0.362 Sum_probs=86.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhh--------------HHHhhhhchhhhhhHhhhhhh
Q 003536 136 LISMIRNAEKNILLLNEARVQALEDLHKILQ----EKEALQGEIN--------------ALEMRLAETDARIRVAAQEKI 197 (812)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 197 (812)
+|.-++|...=|.-|-=-|.+|-+.+..+=. -|..||.+.+ .|...|+-++ .
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAE----------t 71 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAE----------T 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHH----------H
Confidence 4566777777777777777777777655433 3455553332 3334444333 3
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 003536 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (812)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (812)
+.-+||.||+-.|+-+.+.... .+.+ +-.. .+|..|.. .| -.++.
T Consensus 72 RCslLEKQLeyMRkmv~~ae~e----------------------r~~~--le~q-~~l~~e~~---~~-------~~~~~ 116 (178)
T PF14073_consen 72 RCSLLEKQLEYMRKMVESAEKE----------------------RNAV--LEQQ-VSLQRERQ---QD-------QSELQ 116 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------hhHH--HHHH-HHHHHHhc---cc-------hhhHH
Confidence 4559999999999887763111 0100 0111 11222211 11 22334
Q ss_pred hhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 003536 278 DADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (812)
Q Consensus 278 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (812)
..-+.+-+||+|+..| +..+++||.||..- +-..|-+.||.+.||--|+.
T Consensus 117 ~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE----------ehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE----------EHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHH
Confidence 4557788899988775 57788999887543 23456678999999887764
No 286
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=72.78 E-value=1.2e+02 Score=31.95 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=27.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhh-hh-hhhhhHHHHHHhhhhhHHhhHHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELN-SV-KDADERVVMLEMERSSLESSLKEL 300 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 300 (812)
++...++.++.|.-.+=+.=..+-..|. .| .....+...++++|..++.....+
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~ 112 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKL 112 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555555554 22 234445555555555544444333
No 287
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.62 E-value=28 Score=35.29 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=6.8
Q ss_pred HhhhhhhhhhhcchhHHH
Q 003536 250 KELDSLKTENLSLKNDIK 267 (812)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (812)
+|++.+.+....+...+.
T Consensus 95 ~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 95 EELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 288
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.43 E-value=12 Score=42.14 Aligned_cols=105 Identities=28% Similarity=0.298 Sum_probs=65.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (812)
..|...||.||-+||..++.||.++... |.|+- . +++-+++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerL----------E~e~l--~---------------------------s~V~E~v 71 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERL----------ENEML--R---------------------------SHVCEDV 71 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHH----------HHHhh--h---------------------------hhhhhHH
Confidence 3577889999999999999999987554 22211 0 1466888
Q ss_pred HHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003536 329 ENLQGLLAKATKQADQA-ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (812)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (812)
+..|...++++|-.+.+ ..++-|..++ ++.+.-|...--|++=|.++.+-.| +.+++--
T Consensus 72 et~dv~~d~i~Kimnk~Re~vlfq~d~~-----------------~ld~~lLARve~LlRlK~e~~~~~f---~k~~~~l 131 (420)
T PF07407_consen 72 ETNDVIYDKIVKIMNKMRELVLFQRDDL-----------------KLDSVLLARVETLLRLKDEQPSAEF---DKDSHPL 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-----------------cccHHHHHHHHHHHHhhhhcccccc---cchhhhH
Confidence 88888888888777776 2333222221 2233334444457777777776543 4556666
Q ss_pred HHHHH
Q 003536 408 VQLYQ 412 (812)
Q Consensus 408 ~~~~~ 412 (812)
|.-|-
T Consensus 132 Ig~Yf 136 (420)
T PF07407_consen 132 IGRYF 136 (420)
T ss_pred Hhhhc
Confidence 65553
No 289
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.10 E-value=77 Score=31.78 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 003536 155 VQALEDLHKILQEKEALQGEINALEMRLAET 185 (812)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (812)
.+..+.|..+-.++.-|+..|--||.-|..+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776443
No 290
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=71.88 E-value=9.9 Score=34.07 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (812)
.....++.|+.||-.||=-|-||...|...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999843
No 291
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.76 E-value=28 Score=42.75 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEe
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VIt 552 (812)
.+-||+.|++-. | .-|=-.++.+|+.+|+..|..|.+|=
T Consensus 529 ~~~kvI~vtS~~-~---g~GKTtva~nLA~~la~~G~rVLlID 567 (726)
T PRK09841 529 TENNILMITGAT-P---DSGKTFVSSTLAAVIAQSDQKVLFID 567 (726)
T ss_pred CCCeEEEEecCC-C---CCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 345777787632 1 12445689999999999999999884
No 292
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.20 E-value=50 Score=32.51 Aligned_cols=41 Identities=39% Similarity=0.447 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH---HHHHHHHH
Q 003536 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKK---VDKLEESL 366 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 366 (812)
+..+...+.+-+.+..+.+.+- --+..+++++| +++|++.|
T Consensus 106 ~~~~~k~~kee~~klk~~~~~~--~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 106 LEAKLKQEKEELQKLKNQLQQR--KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444433333333 22456677664 56666554
No 293
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.10 E-value=3.2e+02 Score=35.42 Aligned_cols=138 Identities=18% Similarity=0.281 Sum_probs=80.3
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh----------hHHHHh
Q 003536 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD----------QAISVL 349 (812)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 349 (812)
...+..=++.|......|.+++++....+...+++.|.-- ++-++-..+..-|..++++.. |--..=
T Consensus 313 q~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~---~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 313 QDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYN---SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3445555667777888899999999998888888877544 466666666666666555322 222222
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
..+--+|..+-+|...+... +.....||..-+-|....+..-+++++-+..|.. -..-|.+|.+-+..+|.
T Consensus 390 eRDkwir~ei~~l~~~i~~~---ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e----~~~r~~~~~~~~~~~k~ 460 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDT---KEQENILQKEIEDLESELKEKLEEIKELESSINE----TKGRMEEFDAENTELKR 460 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hhhHHHHHHHHHHHHHH
Confidence 33445667777776666543 3445555555555555555554555544444442 13445566555544443
No 294
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.00 E-value=1.1e+02 Score=35.57 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 003536 323 DLYEKVENLQGLLAKATKQAD 343 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~ 343 (812)
.+...+..|+..++.+..+..
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666665555443
No 295
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.74 E-value=2.2e+02 Score=33.45 Aligned_cols=214 Identities=19% Similarity=0.281 Sum_probs=110.7
Q ss_pred cccccchhHHH-------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhHHHhhhhchhhhhhHhhhh
Q 003536 127 ELSTSQLDNLI-------SMIRNAEKNILLLNEARVQALEDLHKILQE----KEALQGEINALEMRLAETDARIRVAAQE 195 (812)
Q Consensus 127 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (812)
++-++-+.||+ .-|=.|==|.-++-.+|.+-.++.---+.. +-.+-.++..+.+.+-..|..-. ..
T Consensus 95 ~v~dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~---~d 171 (446)
T KOG4438|consen 95 GVLDFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVE---ED 171 (446)
T ss_pred CcCCCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cc
Confidence 45677777776 344455567777777777655443222222 22333345566666666654322 22
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc-chhhHhhhhhhhhhhcchhH-HHHHHHHh
Q 003536 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI-HSFSKELDSLKTENLSLKND-IKVLKAEL 273 (812)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 273 (812)
-.-+.=+|++.+.|.+-|..- -.. -++..+.+..|..+.+++++ +.++|-..
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd--------------------------~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv 225 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKD--------------------------FNQQMSLLAEYNKMKKSSTSEKNKILNALKLLV 225 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 223344566666555444331 001 14566677777777776654 34555544
Q ss_pred hhhhhhhhHHH------------HHHhhhhh---HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHH
Q 003536 274 NSVKDADERVV------------MLEMERSS---LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKA 338 (812)
Q Consensus 274 ~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (812)
..+.++.+.+. .+++=+-. ..++..+|+.|-.+-++-|.-+.+++-|-+++..++.....-+
T Consensus 226 ~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~--- 302 (446)
T KOG4438|consen 226 VTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY--- 302 (446)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 44444433211 11111111 3345555666555555555555555555444444433332212
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhh
Q 003536 339 TKQADQAISVLQQNQELRKKVDKLEESLDEANIYK 373 (812)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (812)
+.-+.++..|.+|..|.++....+.-++.+.+..
T Consensus 303 -d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e 336 (446)
T KOG4438|consen 303 -DSLETKVVELKEILELEDQIELNQLELEKLKMFE 336 (446)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788999999888876666666555443
No 296
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.32 E-value=1.6e+02 Score=31.67 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=35.9
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhcc-ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 003536 287 EMERSSLESSLKELESKLSISQEDVAKL-STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 353 (812)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (812)
+.|-..-+.-|.....-|..-+.+...| ..+...-.+.-.|+..|+++|..|..+..+|-.+...|+
T Consensus 152 e~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444443334343333 333333334556777778888887777777776666655
No 297
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.31 E-value=96 Score=36.25 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=46.5
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh--------hhhH
Q 003536 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE--------CKDL 324 (812)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 324 (812)
..||-|-..|-|.++.=.+.|.+ .--+|+-+||.|...|..+| |=+.---....||+++-....+ ..-|
T Consensus 182 eQLRre~V~lentlEQEqEalvN--~LwKrmdkLe~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l 258 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVN--SLWKRMDKLEQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKL 258 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-cCcccCCCchhhhhcCccccCchHHHHHHHHHHH
Confidence 56666666666666655444432 34567777888777777666 3333333455667665333221 1123
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003536 325 YEKVENLQGLLAKATKQ 341 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (812)
...||.|+..|..|.++
T Consensus 259 ~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555444
No 298
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.54 E-value=60 Score=36.40 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhhhcc----cCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHh
Q 003536 201 LLEDQLQKLQHELTHRG----VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (812)
Q Consensus 201 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (812)
.||++-..||.|.++-. .-|.....+ +.+ ....+..-+..|-.|++||..-.+||+...+.|..|-+++
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-v~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQL-VLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHH-HHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766542 111111111 110 0112223355566777777777777777777666665554
No 299
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.40 E-value=36 Score=39.88 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=30.9
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (812)
+..+.+|+..+||+|+.|..+....+.++.+..+..+
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3356888999999999999999999999887776655
No 300
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.20 E-value=46 Score=35.57 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHH
Q 003536 356 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (812)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (812)
++.|++|++.|..+.+. .+||++..-+.++
T Consensus 130 ~~Rl~~L~~~l~~~dv~--~~ek~r~vlea~~ 159 (251)
T PF11932_consen 130 QERLARLRAMLDDADVS--LAEKFRRVLEAYQ 159 (251)
T ss_pred HHHHHHHHHhhhccCCC--HHHHHHHHHHHHH
Confidence 34455555555555554 2344444444443
No 301
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.08 E-value=97 Score=35.55 Aligned_cols=124 Identities=26% Similarity=0.322 Sum_probs=79.8
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
+..-+..++.+=..+.++|.....+...... ..+.+......-..|-..+.++.++-..++.-|.++ |++.
T Consensus 23 ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i------t~dI-- 94 (383)
T PF04100_consen 23 LDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI------TRDI-- 94 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--
Confidence 3444455555555555666555444443222 234444444444556666666666666666665443 3333
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHH
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM 386 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (812)
.-||.|.+..-.+|.+|..=|-|-.-|++|+..+.. .-|+....-|+-.++++
T Consensus 95 ------k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 95 ------KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQYKEIASLLQAVKELL 147 (383)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 248999999999999999999999999999998875 55776666565555555
No 302
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.00 E-value=72 Score=35.65 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=40.1
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 003536 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (812)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (812)
--.+..+..+.+.|+..+.+...++..+.. ..+.....+...|--.++.-+.+++.+..+.++|
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776665432 2345555555566666666666666666665555
No 303
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.93 E-value=3.6e+02 Score=35.14 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=13.7
Q ss_pred hHhhhhhhhhhhcchhHHH
Q 003536 249 SKELDSLKTENLSLKNDIK 267 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (812)
..+|.++++|..-++.-|.
T Consensus 496 ~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 496 NKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888777776643
No 304
>PF13514 AAA_27: AAA domain
Probab=68.88 E-value=3.6e+02 Score=35.13 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=38.1
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 003536 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (812)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (812)
...++|+.|...+..+......+-.++.|...+...+..+..+|-
T Consensus 283 ~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 283 AHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346778888888888888888888899999998888888888887
No 305
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=68.41 E-value=37 Score=35.84 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=42.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhh---hHHHHhh-hhHHHHHHHHHHHHHHhHhh
Q 003536 315 STLKVECKDLYEKVENLQGLLAKATKQAD---QAISVLQ-QNQELRKKVDKLEESLDEAN 370 (812)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (812)
..|+.|...|.++...++.-|.-|++-++ .++-|+. .++.+..+++.++.+|.+|.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555666788888888888888777666 4555554 67888889999999999883
No 306
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.02 E-value=83 Score=31.56 Aligned_cols=89 Identities=27% Similarity=0.343 Sum_probs=52.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhH-----------HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER-----------VVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (812)
....+|...+.++.+|++-|.+|..+|..+...-+. +..|+-|-+.+.+.+++|+..|..-. ++-.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~---sEk~ 83 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR---SEKE 83 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 446778888899999999999998888665443332 22334444444444444444443332 2223
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH
Q 003536 316 TLKVECKDLYEKVENLQGLLAKA 338 (812)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~ 338 (812)
.|.-+|..+.++|..|.......
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455666666666666555443
No 307
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.85 E-value=59 Score=34.56 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=24.6
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhh-----hhhHHHHHHhhhhhHHhhHHHHH
Q 003536 252 LDSLKTENLSLKNDIKVLKAELNSVKD-----ADERVVMLEMERSSLESSLKELE 301 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 301 (812)
|..++.+...++.+.+.|+.++.+.-+ .-..+..+..|...++..+..|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 76 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLR 76 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666555544 33334444444444444444333
No 308
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=67.79 E-value=94 Score=35.50 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQ 351 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (812)
.+..+++-+..+..+..++-.-+..
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~ 252 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNL 252 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666666666666555544
No 309
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=67.54 E-value=7.7 Score=37.54 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.9
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
|||+++. .|+....--++-...|..+.+++||+|.++.|.-
T Consensus 1 Mki~fvm---Dpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVM---DPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEE---S-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEe---CCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 7999985 4553333335677789999999999999999874
No 310
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.40 E-value=2.9e+02 Score=33.22 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=56.9
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 003536 251 ELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (812)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (812)
.|..+-.|.-+|-+.++.|+..++.|. --..++..+||+|+-|+.-..+ +...-+.-|-++..|-.+-+.--...+
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~---e~~e~rk~v~k~~~l~q~~~~~~~eL~ 308 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE---ETTEKRKAVKKRDDLIQSRKQVSFELE 308 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788899999999999999998 6778899999999998876544 445555555555555554333333333
Q ss_pred HHHHHH
Q 003536 330 NLQGLL 335 (812)
Q Consensus 330 ~~~~~~ 335 (812)
.+++.+
T Consensus 309 K~kde~ 314 (613)
T KOG0992|consen 309 KAKDEI 314 (613)
T ss_pred HHHHHH
Confidence 444433
No 311
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.24 E-value=3.1e+02 Score=33.37 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 003536 144 EKNILLLNEARVQ----ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (812)
Q Consensus 144 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (812)
|.-|.+|..-|++ -+|.++..-+|...|..+||.|..-|.|. |.++--|+++.++-..+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ek-----------------e~sl~dlkehassLas~ 374 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEK-----------------ESSLIDLKEHASSLASA 374 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 5668888887775 35666666777788888888887755544 33444455554442111
Q ss_pred cccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh---hhhhhhHHHHHHhhhhhHHhh
Q 003536 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS---VKDADERVVMLEMERSSLESS 296 (812)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 296 (812)
.+-.++.+-++--.|.+=+||---|-.++..-+..+++ -.++++++.-||+|++-.+
T Consensus 375 ------------------glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~-- 434 (654)
T KOG4809|consen 375 ------------------GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR-- 434 (654)
T ss_pred ------------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH--
Confidence 01224445566666777788877777776655555544 3578999999999987654
Q ss_pred HHHHHhhhhcchhhhhccccchhhhhhHH-H---HHHHHH-HHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh
Q 003536 297 LKELESKLSISQEDVAKLSTLKVECKDLY-E---KVENLQ-GLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI 371 (812)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (812)
..+.-+|+-|-.+-++--||+++- + |+..|. ..++ |. ..+.-|-+++-+.+|-. -..|+++..
T Consensus 435 -----de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kd----qn-kkvaNlkHk~q~Ekkk~--aq~lee~rr 502 (654)
T KOG4809|consen 435 -----DECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD----QN-KKVANLKHKQQLEKKKN--AQLLEEVRR 502 (654)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhh----hh-hHHhhHHHHHHHHHHHH--HHHHHHHHH
Confidence 344567777777777777777662 2 233332 1122 11 12223333333332210 011222222
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
..-+--. ++---+..+-+..||.--|.- .++.+-++.-|+|..|...-|..|.-+..+
T Consensus 503 red~~~d-~sqhlq~eel~~alektkQel-~~tkarl~stqqslaEke~HL~nLr~errk 560 (654)
T KOG4809|consen 503 REDSMAD-NSQHLQIEELMNALEKTKQEL-DATKARLASTQQSLAEKEAHLANLRIERRK 560 (654)
T ss_pred HHhhhcc-hHHHHHHHHHHHHHHHHhhCh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 011112334444444433433 346677777788888877777777665443
No 312
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.54 E-value=2.8e+02 Score=32.66 Aligned_cols=120 Identities=24% Similarity=0.368 Sum_probs=68.2
Q ss_pred hhhHhhhhhhhhhhcch----hHHHHHHHHhhhhhhhhhHHHHHHhhhh-------hHHhhHHHHHhhhhcchhhhhccc
Q 003536 247 SFSKELDSLKTENLSLK----NDIKVLKAELNSVKDADERVVMLEMERS-------SLESSLKELESKLSISQEDVAKLS 315 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (812)
+|+.-++.||-|-.-|. ..-+|+..+|- ..+.+||.+-- .|.-.--+||-++..-|+-+..
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm------~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN-- 204 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLM------NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN-- 204 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH--
Confidence 56778888886654433 33345555443 23333433322 2444455677777666665432
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHh---------------------hhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh
Q 003536 316 TLKVECKDLYEKVENLQGLLAKAT---------------------KQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (812)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (812)
.||.+...|..=-+-.. ..-|.|....-.-+-||..|..|..-|..|- |-
T Consensus 205 -------~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq--k~ 275 (552)
T KOG2129|consen 205 -------SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ--KS 275 (552)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 47877777654222222 2345555555556677888888888887664 55
Q ss_pred chHHHHHHH
Q 003536 375 SSEKMQQYN 383 (812)
Q Consensus 375 ~~~~~~~~~ 383 (812)
-.+|++||-
T Consensus 276 ~~ek~~qy~ 284 (552)
T KOG2129|consen 276 YQEKLMQYR 284 (552)
T ss_pred HHHHHHHHH
Confidence 567777763
No 313
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.16 E-value=28 Score=40.18 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHh
Q 003536 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (812)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (812)
..+..+.+|+..+|++...|..+++.||.++
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999854
No 314
>PF13166 AAA_13: AAA domain
Probab=65.08 E-value=3.2e+02 Score=33.21 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHhhhhhhc
Q 003536 355 LRKKVDKLEESLDEANIYKLS 375 (812)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (812)
+.++.++++..+....++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~ 409 (712)
T PF13166_consen 389 LKKEQNELKDKLWLHLIAKLK 409 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444
No 315
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=64.98 E-value=1.1e+02 Score=33.17 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.0
Q ss_pred HCCCeEEEEecCCC
Q 003536 543 KKGHLVEIVLPKYD 556 (812)
Q Consensus 543 klGheV~VItPkY~ 556 (812)
+.|..|.|..+.|+
T Consensus 256 ~~G~~v~v~~~~~~ 269 (334)
T TIGR00998 256 RIGQPVTIRSDLYG 269 (334)
T ss_pred CCCCEEEEEEecCC
Confidence 46888888776664
No 316
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.47 E-value=89 Score=32.87 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=63.6
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHHHhHh
Q 003536 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEA 369 (812)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 369 (812)
..|+-.++||+..|..+...+..+-..+. -+-.+++.++...++-.++|..| +-..+.||-+.. .+-...-+.+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k---~~e~~~~~~~~~~~~~~~~A~~A--l~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKK---ELERRVSRLEAQVADWQEKAELA--LSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888777766554 35567777777777777777777 445666665543 2222222333
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003536 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (812)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (812)
..++.+-+.++...+.|+.++..|+..++..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555443
No 317
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.02 E-value=49 Score=32.28 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 003536 287 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (812)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (812)
+++|..+...|-.|-......++-..++..|+.+++++-.+-+++-.||..
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444433333333333333333444444555555555555555555554
No 318
>PRK11519 tyrosine kinase; Provisional
Probab=63.97 E-value=54 Score=40.33 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEe
Q 003536 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 510 ~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VIt 552 (812)
.+-||+.|++-. | .-|=..++.+|+.+++..|+.|.+|-
T Consensus 524 ~~~kvi~vts~~-~---geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 524 AQNNVLMMTGVS-P---SIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred CCceEEEEECCC-C---CCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345788888732 1 13555689999999999999999984
No 319
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=63.82 E-value=3.4e+02 Score=33.75 Aligned_cols=94 Identities=23% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccc
Q 003536 167 EKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (812)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (812)
..-.+|..+..+.|.|.++...++.+...+--. ...+..++.+........... ...+
T Consensus 108 ~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 165 (670)
T KOG0239|consen 108 LLSELQSNLSELNMALLESVEELSQAEEDNPSI---FVSLLELAQENRGLYLDLSKV-------------------TPEN 165 (670)
T ss_pred hccccccchhhhhhhhhhhhHhhhhhhcccccH---HHHHHHHHhhhcccccccccc-------------------chhh
Confidence 344577788888888888877666554433322 233555555554432221110 1111
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (812)
..+ .++....+...+-+|+..+.++|..|.++-++.
T Consensus 166 ~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 166 SLS-LLDLALKESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred hHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 334444556667778888888888888777653
No 320
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=63.68 E-value=99 Score=33.63 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.2
Q ss_pred CC-CHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 527 VG-GLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 527 vG-GLGdVV~~LsKALqklGheV~VItPk 554 (812)
.| |-..-+..++.+|.+ ||+|.+++..
T Consensus 9 ~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 9 EGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred cCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 46 777778889999999 9999998744
No 321
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=62.98 E-value=1.1e+02 Score=27.07 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh------hc
Q 003536 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ------RS 400 (812)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 400 (812)
.+..++..++...+.-.+......+..++++++|.|-. .+.+....++.+++.++.... .+
T Consensus 15 ~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~-------------~i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 15 DIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTD-------------EIKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 33333344444333333333333322346666665543 233444566677777777642 33
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 003536 401 DEEIHSYVQLYQESVKEFQDTL 422 (812)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (812)
..+..-.-..|....+.|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 4445555556777778888754
No 322
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.97 E-value=3.4e+02 Score=32.74 Aligned_cols=176 Identities=18% Similarity=0.298 Sum_probs=95.2
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc----chhhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST----LKVECK 322 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 322 (812)
.+..-++-+++.|..|+..++.++..-.--.+-.+....++++...|+.....+...+..-+.--|.+.. +.-.+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 5577788889999999999999987664444455566677777777777666666665554433332211 111112
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch-
Q 003536 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD- 401 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (812)
.+-+....+...|+...+.-..|-- +=+.++.++...+-.++..|+-.++.+=++ +-.....++..+...|...-
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~---~l~~~~~~l~~ikR~lek~nLPGlp~~y~~-~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEARE---KLQKLKQKLREIKRRLEKSNLPGLPEDYLD-YFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHHHHHHHHHhcCCc
Confidence 2222222222222222222222211 113455566666667777777777655332 33445566666666665443
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhH
Q 003536 402 --EEIHSYVQLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (812)
.+|+.++..=+..|..+.+..+.+.
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444433
No 323
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.73 E-value=1.8e+02 Score=29.59 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.3
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhh
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (812)
-.+++.++.|+..|+.|++.|+++|.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999988888776
No 324
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.55 E-value=38 Score=32.99 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=40.5
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (812)
|+.+--|+..++.|...|...=..+..++......-+.+....++...|+..+++|+.|...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556665555555556666666666666666667777777777788887776544
No 325
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=61.69 E-value=15 Score=33.99 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=55.3
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (812)
+...|++.+.+.=...+.+++..-..|....-++|.-..||+|...|.+.+...|.+|..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999988754
No 326
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.22 E-value=2.2e+02 Score=29.93 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 003536 325 YEKVENLQGLLAKATKQAD 343 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ 343 (812)
-.|+.+|...|++...|..
T Consensus 149 EkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 327
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.12 E-value=1.2e+02 Score=31.11 Aligned_cols=105 Identities=23% Similarity=0.362 Sum_probs=66.9
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 003536 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (812)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (812)
.=....|.|.-.++.+++.+|.++..+-+ .+-.|++.--.....|.+.-..|..-- +.|-+.-|+++.
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~---evD~Le~~er~aR~rL~eVS~~f~~ys---------E~dik~AYe~A~ 87 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIE---EVDKLEKRERQARQRLAEVSRNFDRYS---------EEDIKEAYEEAH 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC---------HHHHHHHHHHHH
Confidence 33456788888899999999988776654 455566666666677777666664322 235568999999
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 003536 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (812)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (812)
.+|..|.-...+-.+ +-..-.+|++.+..|++.++.|
T Consensus 88 ~lQ~~L~~~re~E~q---Lr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 88 ELQVRLAMLREREKQ---LRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 999988764444332 2333444555555555554443
No 328
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.06 E-value=32 Score=38.31 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHHCCCe
Q 003536 528 GGLGDVVAGLGKALQKKGHL 547 (812)
Q Consensus 528 GGLGdVV~~LsKALqklGhe 547 (812)
.|+|..|--|..-..+.|+.
T Consensus 173 AA~Gq~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 173 AAWGQTALLLQTLAKKLNFK 192 (314)
T ss_dssp HHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 57777776666555566654
No 329
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=61.00 E-value=1.2e+02 Score=33.16 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=43.7
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc---------hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 003536 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL---------KVECKDLYEKVENLQGLLAKATKQADQAISV 348 (812)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (812)
.....+..+..+++.|+..++.++.++..++.++..--.- --.|+...++++..+.-|+.+.++.+.++.-
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666677777777777777777777666554322111 1456666777777776666655555544444
Q ss_pred hh
Q 003536 349 LQ 350 (812)
Q Consensus 349 ~~ 350 (812)
++
T Consensus 212 l~ 213 (301)
T PF14362_consen 212 LD 213 (301)
T ss_pred HH
Confidence 43
No 330
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.78 E-value=4.4e+02 Score=33.32 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=42.3
Q ss_pred HhhcCcchhHhhhhhhhh--hhhhHHhh-----h--hccCCCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCC
Q 003536 475 WKRNGRIRDAYMECKEKN--EHEAISTF-----L--KLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG 545 (812)
Q Consensus 475 ~~~~~~~~d~y~~~~~~~--~~e~~~~~-----~--~~~~~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklG 545 (812)
|..|.....+|.+..... .+|.+.-+ + .++.+....|.-=-.|-.|.+ .-|--.+++..-.++.+.|
T Consensus 975 ~r~dgs~iety~dS~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF----~R~s~~~a~~~i~~f~~fg 1050 (1104)
T COG4913 975 EREDGSVIETYTDSQGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAF----SRSSHVVAGRIIAAFREFG 1050 (1104)
T ss_pred eccCCceeeeeecCCCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhh----ccCCHHHHHHHHHHHHHcC
Confidence 445566666776643322 23333322 1 122222333322222334543 2355667778888999999
Q ss_pred CeEEEEecCC
Q 003536 546 HLVEIVLPKY 555 (812)
Q Consensus 546 heV~VItPkY 555 (812)
....++||.-
T Consensus 1051 lh~v~iTPlk 1060 (1104)
T COG4913 1051 LHAVFITPLK 1060 (1104)
T ss_pred ceEEEechHH
Confidence 9999999973
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=60.73 E-value=2e+02 Score=30.69 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=58.1
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH-HHHHHHHHhHh
Q 003536 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK-VDKLEESLDEA 369 (812)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 369 (812)
..|+-.++|||..+......+...-..+ +-+-.+++.++...++-..+|..| +-..+.||-++ +.+=...-+.+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~---k~~er~~~~~~~~~~~~e~kA~~A--l~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEK---KQLTRRIEQAEAQQVEWQEKAELA--LRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777766655544433 346666777777777766666666 44455565544 11111122233
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003536 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (812)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (812)
.-++-..+..+...+.|++++..|+..+...-..
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555555555544433
No 332
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.24 E-value=26 Score=36.09 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh
Q 003536 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR 190 (812)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (812)
+.....-++|......+..++.++..+...|.+.++.+.
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~ 112 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS 112 (194)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhhhhHH
Confidence 444455577788888888888888888887777766544
No 333
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.12 E-value=2.9 Score=52.24 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 003536 282 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 361 (812)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (812)
....||++|..|+..++||-.+|..+-....+-+.-.+ ..|=.+|..|+.-|+.-.. .+.+..+.+-+
T Consensus 708 ~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i--~kLE~ri~eLE~~Le~E~r----------~~~~~~k~~rk 775 (859)
T PF01576_consen 708 HNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQI--AKLEARIRELEEELESEQR----------RRAEAQKQLRK 775 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHH--HHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 45568999999999999999999998877766543333 2455788899988887333 23344444444
Q ss_pred HHHHHhHhhh----hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 003536 362 LEESLDEANI----YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (812)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (812)
++..+++... .+-..+.+|...+.|+.|||.+...+...-++......-|.
T Consensus 776 ~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~R 830 (859)
T PF01576_consen 776 LERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYR 830 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444444432 23334556777789999999999999888888776665554
No 334
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.93 E-value=59 Score=36.65 Aligned_cols=129 Identities=19% Similarity=0.300 Sum_probs=71.8
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHH--hhhhhHHhhHHHHHhhhhcchhhhhccccchhhh
Q 003536 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE--MERSSLESSLKELESKLSISQEDVAKLSTLKVEC 321 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (812)
....|..|+..||..=..++-||..|+..+....-.++.+..-. .||+.|=..|..
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk---------------------- 137 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEK---------------------- 137 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHH----------------------
Confidence 34467777778887777778888888887776554443222211 444444333322
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhh----hhchHHHHHHHHHHHHHHHHHHHHH
Q 003536 322 KDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY----KLSSEKMQQYNELMQQKMKLLEERL 397 (812)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (812)
++++.+.|+.=+...+.--+. +...-...+.|++.|-.-|--.--. =..-+.+--.|..|+++++.+++-.
T Consensus 138 --~~~q~~qLe~d~qs~lDEkeE---l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 138 --LREQIEQLERDLQSLLDEKEE---LVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333332222222 3445566788888887666432111 1124555567888898888887755
Q ss_pred hh
Q 003536 398 QR 399 (812)
Q Consensus 398 ~~ 399 (812)
.-
T Consensus 213 ~l 214 (319)
T PF09789_consen 213 EL 214 (319)
T ss_pred HH
Confidence 43
No 335
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.68 E-value=2.9e+02 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (812)
+|..-+..-|+||..|.-|.++|..++.+....-+
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~e 121 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCE 121 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHH
Confidence 56777888999999999999999988776654443
No 336
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.19 E-value=3.6e+02 Score=31.75 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 003536 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (812)
-+....+..+++.....-++....++.-++++..+.+..+.+
T Consensus 362 ~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~ 403 (503)
T KOG2273|consen 362 AEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQL 403 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333333344444444444445555556666555554443
No 337
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.14 E-value=1.1e+02 Score=32.27 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHh
Q 003536 270 KAELNSVKDADERVVMLEMERSSLESSLKELES 302 (812)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (812)
...|+.....-+++-.||+|-+.|++.|.++..
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666777777777777777766666553
No 338
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.04 E-value=4.2e+02 Score=32.59 Aligned_cols=189 Identities=23% Similarity=0.331 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCc
Q 003536 155 VQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPA 234 (812)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (812)
..-|++++.-+...+.+|..|.-|+-|+++...++...... .+.+.+..+++ +
T Consensus 127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~--~a~~~e~~~~q---~---------------------- 179 (629)
T KOG0963|consen 127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN--AANETEEKLEQ---E---------------------- 179 (629)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---H----------------------
Confidence 34578888888889999999999999999998776654431 12233222221 1
Q ss_pred ccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHH----hhhhhHHhhHHHHHhhhhc
Q 003536 235 NEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLE----MERSSLESSLKELESKLSI 306 (812)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 306 (812)
.-+-...|+.+++.++.-++.+...++.. ..|...++.++ .|-+..-+-+.=+=..|..
T Consensus 180 -------------~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~ 246 (629)
T KOG0963|consen 180 -------------WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELED 246 (629)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 12233445555555555555555444332 22222222221 1122222212111222222
Q ss_pred chhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh--------HHHHhhh----hHHHHHHHHHHHHHHhHhhhhhh
Q 003536 307 SQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ--------AISVLQQ----NQELRKKVDKLEESLDEANIYKL 374 (812)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 374 (812)
||.-+ -.+...|+.|...|.+++--.+. ..++|.| ++.|-.-|..+++||.+.- .-
T Consensus 247 aq~ri----------~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~--e~ 314 (629)
T KOG0963|consen 247 AQQRI----------VFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER--EK 314 (629)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 22211 13556667777777666543333 3455543 4556666777777776542 23
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 003536 375 SSEKMQQYNELMQQKMKLLEE 395 (812)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ 395 (812)
++..|++.+..+..+..-+|+
T Consensus 315 ~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEE 335 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554
No 339
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=59.01 E-value=1.5e+02 Score=34.35 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhhHHHhhhhchhhhhhHhh
Q 003536 153 ARVQALEDL-HKILQEKEALQGEINALEMRLAETDARIRVAA 193 (812)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (812)
++..+.... +-+..+.++|+.++...|++.+.-.++..+..
T Consensus 188 ~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~ 229 (458)
T COG3206 188 AQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD 229 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 344444333 34445667888888888888888777776655
No 340
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=58.89 E-value=2.5e+02 Score=29.79 Aligned_cols=183 Identities=18% Similarity=0.302 Sum_probs=94.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh-ccccchhhhhhHHHHHHHHHHHHHHHhh
Q 003536 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA-KLSTLKVECKDLYEKVENLQGLLAKATK 340 (812)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (812)
|+..+...-++.....-|++.+-.--+.|+.|.+-.+.|+.+-...-..++ -+...+-.||. |...++.+.+
T Consensus 20 lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~-------l~~~i~~~~~ 92 (215)
T PF07083_consen 20 LKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKE-------LIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHH
Confidence 455666666666667778888888889999998888888876554433332 23333344444 4444444444
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhHhh-hhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 003536 341 QADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (812)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (812)
..+.-+-...+ +.-..|.+.+.+-+++.. -|.+....+.. +...+-..-=-.+...-++|.+.|.--.+..++..
T Consensus 93 ~I~~~ik~~Ee-~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~---~~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~ 168 (215)
T PF07083_consen 93 KIDEQIKEFEE-KEKEEKREKIKEYFEEMAEEYGVDPEPFER---IIKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIK 168 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHhh---hcchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 344556677766665432 23333332221 11111110011122233444444443333333333
Q ss_pred HHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhhHHhhcCc
Q 003536 420 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLST 464 (812)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~l~~~~~~ 464 (812)
.....+.+. +.. -.||++-|.++|- +|..|..++..
T Consensus 169 ~~~~~i~~~----A~~---~~l~~~~yi~~l~--~g~~l~eil~~ 204 (215)
T PF07083_consen 169 AAKQAIEEK----AEE---YGLPADPYIRMLD--YGKTLAEILKQ 204 (215)
T ss_pred HHHHHHHHH----HHH---cCCCcHHHHHHHH--cCCCHHHHHHH
Confidence 322222222 121 5699999999887 56665555443
No 341
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=57.92 E-value=2.3e+02 Score=29.22 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 003536 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (812)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (812)
|-..++++.-|++...+.+++-.. ++.=.+|+++++..++++.
T Consensus 134 ~~~~~~a~~~l~kkk~~~~kl~~~---~~~~~~k~~~~~~ei~~~~ 176 (236)
T PF09325_consen 134 LIEYQNAEKELQKKKAQLEKLKAS---GKNRQDKVEQAENEIEEAE 176 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc---chhhhHHHHHHHHHHHHHH
Confidence 444455555555555555444221 1111455666665555543
No 342
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=57.59 E-value=2.8e+02 Score=32.93 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHhhhhcchhhhhccccchhh----hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhh
Q 003536 298 KELESKLSISQEDVAKLSTLKVE----CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYK 373 (812)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (812)
+--|++|+.|-+ ++||.|++| -.-|-+.-..||.+|..++.-+.-|=-+| =.|.+.=+.+.+.+
T Consensus 380 kG~~~rF~~sla--aEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll----------vrl~eaeea~~~a~ 447 (488)
T PF06548_consen 380 KGAESRFINSLA--AEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL----------VRLREAEEAASVAQ 447 (488)
T ss_pred ccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH----------HHHHhHHHHHHHHH
Confidence 334666665543 578888874 33455566778888876554443332222 23555555566667
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003536 374 LSSEKMQQYNELMQQKMKLLEERL 397 (812)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~ 397 (812)
-..-..+|.|+.+-++|..|..+.
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888887776554
No 343
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=57.34 E-value=64 Score=32.83 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=51.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHHHHHHHHhhH
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYV-QLYQESVKEFQDTLHSLK 426 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 426 (812)
+..+|+++.+++++|.+.|..+ +|....-.+.-.|.+.+..+...++|...+ ++|-..++-+++.-..|.
T Consensus 79 L~k~~Pev~~qa~~l~e~lQ~~---------vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~ 149 (155)
T PF07464_consen 79 LRKANPEVEKQANELQEKLQSA---------VQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLH 149 (155)
T ss_dssp GGG-SHHHHHT-SSSHHHHHHH---------HHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447999999999999998765 455666677778889999999999999988 899888888877766665
Q ss_pred H
Q 003536 427 E 427 (812)
Q Consensus 427 ~ 427 (812)
.
T Consensus 150 ~ 150 (155)
T PF07464_consen 150 E 150 (155)
T ss_dssp H
T ss_pred H
Confidence 3
No 344
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.27 E-value=69 Score=30.95 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=32.9
Q ss_pred hhcchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 003536 259 NLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQ 308 (812)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (812)
+|.++.|...++..+..-.+ .+.++-.|||....|+..+++++.+|..+.
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666654433 345677777777777777777777765543
No 345
>PRK10869 recombination and repair protein; Provisional
Probab=57.23 E-value=4.2e+02 Score=31.96 Aligned_cols=21 Identities=5% Similarity=0.196 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhchhhHH
Q 003536 385 LMQQKMKLLEERLQRSDEEIH 405 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (812)
.|+++++.++..+...-.++.
T Consensus 345 ~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 345 TLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444
No 346
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.59 E-value=18 Score=43.59 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=36.1
Q ss_pred CcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 003536 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (812)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (812)
...|-.|..|...|+.+++.||..|+.|+.+|.......+.-....+|-.-++..+..||.+|.
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666655544444444444445555555555443
No 347
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.25 E-value=4.9e+02 Score=32.49 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=16.7
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhh
Q 003536 314 LSTLKVECKDLYEKVENLQGLLAKATKQA 342 (812)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (812)
++.++-+|+..=+++.-+-..+.+-.++-
T Consensus 167 ~s~~q~e~~~~~~~~~~~~s~l~~~eke~ 195 (716)
T KOG4593|consen 167 LSELQWEVMLQEMRAKRLHSELQNEEKEL 195 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555554443
No 348
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=56.08 E-value=6.4e+02 Score=33.75 Aligned_cols=148 Identities=23% Similarity=0.255 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH----HHhhhhcchhhhhccccchhhhhhHHHHHHHHHH---
Q 003536 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE----LESKLSISQEDVAKLSTLKVECKDLYEKVENLQG--- 333 (812)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 333 (812)
..--+|+-+..+|..--+..-.+..+-+|.+.+..++.. +|+..-..+++.-.++-++- +|..+.+.+.
T Consensus 799 ~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~----~~~e~k~~~~~~~ 874 (1294)
T KOG0962|consen 799 LREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN----LRNELKEEKQKIE 874 (1294)
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344567778888877555555666677777775555544 44444444444444444432 4433333333
Q ss_pred -HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 003536 334 -LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM-QQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (812)
Q Consensus 334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (812)
.|..+.+--++.. -|+ -+....+-++.++++...--+.+.+.. ..|.+++.++=- -++-.|...++|++++...
T Consensus 875 ~~l~~~~qle~~~~-~l~--e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 875 RSLARLQQLEEDIE-ELS--EEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred HHHHHHHhhHHHHH-HHH--HHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 3333332222221 111 122223334444444444444444333 334444444322 5555677778888777665
Q ss_pred HHHHH
Q 003536 412 QESVK 416 (812)
Q Consensus 412 ~~~~~ 416 (812)
...++
T Consensus 951 ~~~~~ 955 (1294)
T KOG0962|consen 951 HQIYK 955 (1294)
T ss_pred HHHHH
Confidence 55543
No 349
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.02 E-value=31 Score=37.36 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=69.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhh--hhh--hchHHHHHHHHHHHHHHHHHHHHHh------------------------
Q 003536 347 SVLQQNQELRKKVDKLEESLDEAN--IYK--LSSEKMQQYNELMQQKMKLLEERLQ------------------------ 398 (812)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 398 (812)
+|-.|-.-+|.++-.||+.|.... +.+ --.++||.=|.-|=+|++=|-.-=.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPG 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCCCCC
Confidence 477888889999999999886543 222 2334666666677777776643221
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhhHHhhcCc
Q 003536 399 -RSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLST 464 (812)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~l~~~~~~ 464 (812)
.+|.|...|=+.|++++-=|.+-= +.|..++ ...||+ |.|+.+.+-+++|..+.+.
T Consensus 163 ~~~d~e~~rY~~~YE~~l~PF~~F~---~~E~~R~-----~~~L~~--~eR~~ls~~r~vL~nr~~R 219 (248)
T PF08172_consen 163 GSSDVESNRYSSAYEESLNPFAAFR---KRERQRR-----YKRLSP--PERIFLSLTRFVLSNRTTR 219 (248)
T ss_pred CCCchhHHHHHHHHHhccChHHHHh---HhhHHHH-----HhcCCh--HHHHHHHHHHHHhcChhhH
Confidence 246677789999999986554411 1233332 334754 8888887788877655544
No 350
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.48 E-value=52 Score=35.20 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.2
Q ss_pred ccchhhHhhhhhhh
Q 003536 244 EIHSFSKELDSLKT 257 (812)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (812)
.+|.+..++..++.
T Consensus 115 R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 115 RLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHh
Confidence 36777788887776
No 351
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.28 E-value=4.3e+02 Score=31.50 Aligned_cols=142 Identities=29% Similarity=0.266 Sum_probs=67.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh-hHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK-DLY 325 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 325 (812)
+--+|++++.++|-..-+-....|+.+. .+..||-+|+.++...++||. +.- +.+.-+|-. +==
T Consensus 228 se~ee~eel~eq~eeneel~ae~kqh~v-------~~~ales~~sq~~e~~selE~-llk-------lkerl~e~l~dge 292 (521)
T KOG1937|consen 228 SEEEEVEELTEQNEENEELQAEYKQHLV-------EYKALESKRSQFEEQNSELEK-LLK-------LKERLIEALDDGE 292 (521)
T ss_pred ccchhHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHH-HHH-------hHHHHHHhcCChH
Confidence 4456667777766655333333444443 345677778888888888873 322 222222210 112
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH----HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKK----VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (812)
+-++.|+.+|....++. +..-+|-+|-|.- .-.|.+.|+ .-..-++ . -.++..+|--++.-+
T Consensus 293 ayLaKL~~~l~~~~~~~---~~ltqqwed~R~pll~kkl~Lr~~l~---~~e~e~~-------e-~~~IqeleqdL~a~~ 358 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQM---EELTQQWEDTRQPLLQKKLQLREELK---NLETEDE-------E-IRRIQELEQDLEAVD 358 (521)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHh---cccchHH-------H-HHHHHHHHHHHHHHH
Confidence 33444455554433332 2233444443322 222222221 1111111 1 134556677777777
Q ss_pred hhHHHHHHHHHHHHHH
Q 003536 402 EEIHSYVQLYQESVKE 417 (812)
Q Consensus 402 ~~~~~~~~~~~~~~~~ 417 (812)
+||++-..+|.....+
T Consensus 359 eei~~~eel~~~Lrse 374 (521)
T KOG1937|consen 359 EEIESNEELAEKLRSE 374 (521)
T ss_pred HHHHhhHHHHHHHHHH
Confidence 7777766666554443
No 352
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=55.28 E-value=5.6e+02 Score=32.79 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=48.1
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHH---HHHHH----HHHHHHHHHHHHh--------hhhhhHHHh-----hhhchhhh
Q 003536 129 STSQLDNLISMIRNAEKNILLLNEA---RVQAL----EDLHKILQEKEAL--------QGEINALEM-----RLAETDAR 188 (812)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~ 188 (812)
-..-....-+|+-|..+|.-.--+. |-.-| ++++++-.++|+- |.+..+.|+ -..|..++
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556678888888876544332 22223 3555555444433 233333333 23344555
Q ss_pred hhHhhhhhhhHhhhHHHHHHHH-HHhhhcccC
Q 003536 189 IRVAAQEKIHVELLEDQLQKLQ-HELTHRGVS 219 (812)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 219 (812)
-...-++.|+...+.++++.+. .|+-.+|..
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k 652 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGK 652 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666777777777776665 444444433
No 353
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=54.00 E-value=6.2e+02 Score=32.95 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=10.1
Q ss_pred CCCCCEEEEcCcccch
Q 003536 638 GKQPDIIHCHDWQTAF 653 (812)
Q Consensus 638 g~kPDIIH~HDWhTA~ 653 (812)
+.+||++-+-+.-+++
T Consensus 973 ~~~~~~l~lDEp~~~l 988 (1047)
T PRK10246 973 KTRIDSLFLDEGFGTL 988 (1047)
T ss_pred CCCCCEEEEeCCCCcC
Confidence 3467877777755443
No 354
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=53.86 E-value=2.3e+02 Score=31.36 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=7.3
Q ss_pred HCCCeEEEEecC
Q 003536 543 KKGHLVEIVLPK 554 (812)
Q Consensus 543 klGheV~VItPk 554 (812)
+.|..|.|....
T Consensus 260 ~~Gq~v~i~~~~ 271 (346)
T PRK10476 260 RVGDCATVYSMI 271 (346)
T ss_pred CCCCEEEEEEec
Confidence 357777775433
No 355
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=53.69 E-value=1.9e+02 Score=33.29 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (812)
.+++.++..|+.+..+-.+++ -..=+..+.+++.+...|+. +++.+ --+..+|++..++.||..+ +.
T Consensus 305 ~~l~~~~q~L~~l~~rL~~a~--~~~L~~~~~~L~~l~~rL~~-----lsP~~---~L~r~~qrL~~L~~rL~~a---~~ 371 (438)
T PRK00286 305 RLLAQQQQRLDRLQQRLQRAL--ERRLRLAKQRLERLSQRLQQ-----QNPQR---RIERAQQRLEQLEQRLRRA---MR 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh-----cCHHH---HHHHHHHHHHHHHHHHHHH---HH
Confidence 345555555666555555552 23334455667777776653 23332 2356778888888887644 44
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003536 406 SYVQLYQESVKEFQDTL 422 (812)
Q Consensus 406 ~~~~~~~~~~~~~~~~~ 422 (812)
..++-++..++.....|
T Consensus 372 ~~L~~~~~rL~~l~~rL 388 (438)
T PRK00286 372 RQLKRKRQRLEALAQQL 388 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444433
No 356
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.41 E-value=5.3e+02 Score=32.01 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=27.8
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 003536 286 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (812)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (812)
|+++-..+++.|.+.|.++...+..- ++-.+..|-....+.+..|+..+..+..+
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~-~~~d~~~ea~~~l~~~~~l~~ql~~l~~~ 326 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQR-DSVDLNLEAKAVLEQIVNVDNQLNELTFR 326 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555554444331 23334455556677777777666555433
No 357
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.97 E-value=4.7e+02 Score=31.29 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=9.5
Q ss_pred HHHHHhhhhhHHhhHHHHHhhh
Q 003536 283 VVMLEMERSSLESSLKELESKL 304 (812)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ 304 (812)
+..+..+.+.+++.+++++.++
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 358
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=52.75 E-value=6.1e+02 Score=32.49 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=54.9
Q ss_pred hhhHhhhHHHHHHHHHHhhhc-----ccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHH
Q 003536 196 KIHVELLEDQLQKLQHELTHR-----GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 270 (812)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (812)
-|.--|++-+++.||+|+.+- .-.+|....++..+..|.++- |- -.|+=|+.+.+|- ..|+
T Consensus 1084 ei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiek----Dm---caselfneheeeS-------~ifd 1149 (1424)
T KOG4572|consen 1084 EIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEK----DM---CASELFNEHEEES-------GIFD 1149 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccch----hH---HHHHHHHHhhhhc-------chHH
Confidence 345557888999999999764 233333334444444333221 11 2233334333333 3467
Q ss_pred HHhhhhhhhhhHHHHHHh---hhhh-----HHhhHHHHHhh
Q 003536 271 AELNSVKDADERVVMLEM---ERSS-----LESSLKELESK 303 (812)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~ 303 (812)
++++.++..-+--+..+| |.+. ++++|+++|..
T Consensus 1150 aa~nKiakiHe~AfEieknlkeQaielank~dpeLraiead 1190 (1424)
T KOG4572|consen 1150 AAGNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEAD 1190 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHhh
Confidence 788888888888888887 4332 56777777754
No 359
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.64 E-value=4.6e+02 Score=33.17 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=47.9
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHHHHH
Q 003536 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENLQGL 334 (812)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (812)
+.-|.+-|+.+..-+..+-.....+..+.-+++.++..+.-.++.-... +.+......++.+-..+-...++|..-
T Consensus 532 kadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~ 611 (769)
T PF05911_consen 532 KADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEME 611 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444445555444444333321111 222222222222222332223344455
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 003536 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (812)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (812)
|.+++.+.+..-. |=+++..++..|+.-|+.++
T Consensus 612 L~~~~d~lE~~~~---qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 612 LASCQDQLESLKN---QLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5565555554432 33566666666666666443
No 360
>PLN02842 nucleotide kinase
Probab=52.35 E-value=77 Score=37.88 Aligned_cols=145 Identities=14% Similarity=0.219 Sum_probs=88.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhh--HHhhcCcHHHHHHHHH
Q 003536 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWL--LEKKLSTSEAKLLREM 473 (812)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~--l~~~~~~~e~~~l~~~ 473 (812)
|.....+-|+.-++.|.+..+..-+ .-..+......+.=+.++|..++-.|+... .++++...-++...+
T Consensus 150 R~DD~eE~IkkRL~~Y~~~t~pIl~-------~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~~~~~~~~~~~~- 221 (505)
T PLN02842 150 RPDDTEEKVKARLQIYKKNAEAILS-------TYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDATKMIKTKKASPVQD- 221 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhHHH-------hcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhhhhcccccccchhh-
Confidence 3333444555555555555433222 222222333343345667777665555442 245555554444433
Q ss_pred HHhhcCcchhHhhh-------hhhhhhhhhHHh-hhhccCCCCCCCCeEEEEecccCC---cccCCCHHHHHHHHHHHHH
Q 003536 474 VWKRNGRIRDAYME-------CKEKNEHEAIST-FLKLTSSSISSGLHVIHIAAEMAP---VAKVGGLGDVVAGLGKALQ 542 (812)
Q Consensus 474 v~~~~~~~~d~y~~-------~~~~~~~e~~~~-~~~~~~~~~~~~MKIL~ISsE~aP---~aKvGGLGdVV~~LsKALq 542 (812)
.| +-.++++. ++.||=.++..+ ...+.. +..+|+|-..-+|..| ...+|++=.+|..++-.++
T Consensus 222 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~ 295 (505)
T PLN02842 222 KW----RGIPTRLNNIPHSREIRAYFYDDVLQATQRAVND--GRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFA 295 (505)
T ss_pred hh----ccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhC--CcceEEEEEecCccccccccccchhHHHHHHHHHHHHh
Confidence 35 66677764 456775555544 344433 4577888888899877 2357999899999999999
Q ss_pred HCCCeEEEEecC
Q 003536 543 KKGHLVEIVLPK 554 (812)
Q Consensus 543 klGheV~VItPk 554 (812)
+.|-.|.|+.|.
T Consensus 296 ~~~~~~kv~~~~ 307 (505)
T PLN02842 296 DDGKRVKVCVQG 307 (505)
T ss_pred hcCCceEEEecC
Confidence 999999999887
No 361
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.33 E-value=48 Score=33.29 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 003536 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (812)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (812)
..+.+..|+++.+.|++.|+.|.+.++..+- ...+..|+.||..+-++++.|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777888888777765542 23445556666666666666554
No 362
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.24 E-value=5e+02 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=18.6
Q ss_pred cCCcccCCCHHHHHHHHHHHHHH--CCCeEEEEe
Q 003536 521 MAPVAKVGGLGDVVAGLGKALQK--KGHLVEIVL 552 (812)
Q Consensus 521 ~aP~aKvGGLGdVV~~LsKALqk--lGheV~VIt 552 (812)
|.|. -+..+|..++...... .|++|.|+.
T Consensus 368 f~p~---~sQ~~VF~e~~~lv~S~lDGYnVCIFA 398 (670)
T KOG0239|consen 368 FGPL---ASQDDVFEEVSPLVQSALDGYNVCIFA 398 (670)
T ss_pred cCCc---ccHHHHHHHHHHHHHHHhcCcceeEEE
Confidence 4554 3566666666655543 489998885
No 363
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.14 E-value=2.6e+02 Score=28.05 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=45.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhh-chHHHHH---HHHHHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHH
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIYKL-SSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDTL 422 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 422 (812)
++.+.+.+++.+.+.++.++......- ...++++ -...+++.++.++.++......+...+.-+. .-+.+|+.+|
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655555433211 2233322 2334556666777777777777766655443 3566677776
Q ss_pred HhhHHhh
Q 003536 423 HSLKEES 429 (812)
Q Consensus 423 ~~~~~~~ 429 (812)
..+-...
T Consensus 195 ~~~~~~q 201 (218)
T cd07596 195 KEFARLQ 201 (218)
T ss_pred HHHHHHH
Confidence 6655443
No 364
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.36 E-value=3.5e+02 Score=29.30 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=49.2
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHH---HHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHH
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE---LMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDTLH 423 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 423 (812)
+.++.|+++..+.+.++.++.-.- ...++|+++... -+++|+...+.+|+....-|..-+.-++ +-+++|..++.
T Consensus 131 ~~~~~~~~~~~l~kKr~~~~Kl~~-~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~ 209 (234)
T cd07665 131 TWQRWQDAQAMLQKKREAEARLLW-ANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHII 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444333211 124677776543 4567888999999998888888776665 45777777665
Q ss_pred hhHH
Q 003536 424 SLKE 427 (812)
Q Consensus 424 ~~~~ 427 (812)
.-.+
T Consensus 210 ~fle 213 (234)
T cd07665 210 KYLE 213 (234)
T ss_pred HHHH
Confidence 5443
No 365
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=51.27 E-value=4e+02 Score=31.42 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=27.5
Q ss_pred ccchhhHhhhhhhhh----hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 003536 244 EIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (812)
Q Consensus 244 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (812)
.|.+|-.||.+||.= ....+.+|..++.++..++...-. ..---.|+.++++-+.|. .
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~-~~~~~~R~~~~~~k~~L~-----------------~ 213 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTN-ASGDSNRAYMESGKKKLS-----------------E 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHH-----------------H
Confidence 344445555555432 223456677777777766662211 113456777777766654 4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhh
Q 003536 320 ECKDLYEKVENLQGLLAKATKQAD 343 (812)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~ 343 (812)
+|..|-.+|+.||++.+...+-+-
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~ 237 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVV 237 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888766543
No 366
>COG4550 Predicted membrane protein [Function unknown]
Probab=50.56 E-value=2.6e+02 Score=27.51 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 003536 324 LYEKVENLQGLLAKA-----TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (812)
Q Consensus 324 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (812)
.-.++.+|...+..+ -+||+. -+-+||.+..+|++++..=++|.-++- +.+ ++-+|..|.+.+
T Consensus 7 i~~~a~~la~~ik~teeV~~fq~aE~---qin~n~~v~~~~~~iK~lQKeAVn~q~----y~K-----~eAlkqses~i~ 74 (120)
T COG4550 7 ILKQADNLANKIKETEEVKFFQQAEA---QINANQKVKTKVDEIKKLQKEAVNLQH----YDK-----EEALKQSESKID 74 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhHHHHH----hhH-----HHHHHHHHHHHH
Confidence 444555555554432 234554 467899999999999999999986542 211 244566666666
Q ss_pred hchhhHHH--HHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 399 RSDEEIHS--YVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 399 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
.-..+|.+ -|+-|+.|..+--|.|.-+..+-+.
T Consensus 75 ~le~ei~~~PlVeefr~sq~daNdLlQ~it~tie~ 109 (120)
T COG4550 75 ELEAEIDHLPLVEEFRTSQEDANDLLQYITKTIET 109 (120)
T ss_pred HHHHHHhcCchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66666655 3666666666666655555544433
No 367
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=50.18 E-value=3.7e+02 Score=29.86 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc------hhh------hhccccchhhhhhHHHHHHHH-----HH
Q 003536 271 AELNSVKDADERVVMLEMERSSLESSLKELESKLSIS------QED------VAKLSTLKVECKDLYEKVENL-----QG 333 (812)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~-----~~ 333 (812)
+.|.++......-..|-+||..+=.-+.+..++|+-. ..| +.++..|+-|+..|..+...+ .-
T Consensus 6 ~~l~~~~~~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~V 85 (268)
T PF11802_consen 6 QDLDDVEDVTDAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEV 85 (268)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHH
Q ss_pred HHHHHhhhhhhHHHHhhhh-HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHH
Q 003536 334 LLAKATKQADQAISVLQQN-QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL-QRSDEEIHSYVQLY 411 (812)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 411 (812)
|+.-+..+-++-+.=|+.. ...+.|-++|++.|++ .+...+.-||..+-|..+.+.|+... .-|+.-+..-+.-+
T Consensus 86 L~~lgkeelqkl~~eLe~vLs~~q~KnekLke~Ler---Eq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K 162 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLER---EQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTK 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 003536 412 QESVKEFQDTL 422 (812)
Q Consensus 412 ~~~~~~~~~~~ 422 (812)
..-+++|+..|
T Consensus 163 ~~~~k~~~e~L 173 (268)
T PF11802_consen 163 IEKIKEYKEKL 173 (268)
T ss_pred HHHHHHHHHHH
No 368
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=50.10 E-value=3.5e+02 Score=28.92 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (812)
++...+..+..+.-.+-+.-..+-..|..+ .+.......+++.|-.+...-..++.++..+-..+.|-. .+|+ .++
T Consensus 62 s~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK-~~Y~--~~c 138 (234)
T cd07652 62 SFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAK-ARYD--SLA 138 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHH--HHH
Confidence 334445555444443333333333333222 222334445556666555555555555555554444422 2232 344
Q ss_pred HHHHHHHHH--HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003536 326 EKVENLQGL--LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (812)
Q Consensus 326 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (812)
+..|.++.. =.+..--........++-.++++|++..+..... .+-+.....-+-|+-.+-+-++.|-+-..++|.-
T Consensus 139 ~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~-~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~ 217 (234)
T cd07652 139 DDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYAS-KVNAAQALRQELLSRHRPEAVKDLFDLILEIDAA 217 (234)
T ss_pred HHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 444443321 0000000112233445556888888876543321 1222222222223445666677777777788888
Q ss_pred HHHHHHHHH
Q 003536 404 IHSYVQLYQ 412 (812)
Q Consensus 404 ~~~~~~~~~ 412 (812)
+.-+++=|+
T Consensus 218 l~~~~~~~~ 226 (234)
T cd07652 218 LRLQYQKYA 226 (234)
T ss_pred HHHHHHHHh
Confidence 888777775
No 369
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.58 E-value=2e+02 Score=27.88 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=14.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhH
Q 003536 348 VLQQNQELRKKVDKLEESLDE 368 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (812)
+-+.--+|+.+|+.+...|+.
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777777665
No 370
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=49.33 E-value=4.4e+02 Score=29.82 Aligned_cols=179 Identities=22% Similarity=0.339 Sum_probs=88.3
Q ss_pred hhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhccc------CcccchhhhhcCCCCcccccccCCcc
Q 003536 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGV------SEHSELDVFANQNEPANEDLVLNNSE 244 (812)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (812)
-.|++|+|.+.-+-...++. .+|-.-+-||.++|-.|.-|+..-- +..+++.+-+.... |--
T Consensus 61 y~~QLn~L~aENt~L~SkLe---~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~r---------dEw 128 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLE---KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRAR---------DEW 128 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHH---HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHh---------hHH
Confidence 34555565554444433333 3455567788899999988886411 11111111110000 000
Q ss_pred cc---hhhHhhhhhhhhhhcchhH-------HHHHHHHhhhhhhh----hhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 003536 245 IH---SFSKELDSLKTENLSLKND-------IKVLKAELNSVKDA----DERVVMLEMERSSLESSLKELESKLSISQED 310 (812)
Q Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (812)
+| -+.-+++.||..|-.|-.. +..|+.+|..+.++ .=-+-.+.++.+.-...++|||......++.
T Consensus 129 ~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~k 208 (305)
T PF14915_consen 129 VRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDK 208 (305)
T ss_pred HHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00 0111233344444443332 23334444333322 1123344556666777788999988888888
Q ss_pred hhccccchhhhhhHHHHHHH-------HHHHHHHHhhhhhh-HHHHhhhhHHHHHHHHHHHH
Q 003536 311 VAKLSTLKVECKDLYEKVEN-------LQGLLAKATKQADQ-AISVLQQNQELRKKVDKLEE 364 (812)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 364 (812)
|++--. +.|| +-|++.. |+..|+.|-+.++. --+|..-...+++-|.+|.+
T Consensus 209 v~k~~~-Kqes--~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~a 267 (305)
T PF14915_consen 209 VNKYIG-KQES--LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQA 267 (305)
T ss_pred HHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 887544 4443 3333333 55677777777763 22344333445555555544
No 371
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=49.27 E-value=4.9e+02 Score=30.38 Aligned_cols=101 Identities=26% Similarity=0.194 Sum_probs=59.3
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc---------hhhhhccccchhhhhhHHHHHH
Q 003536 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS---------QEDVAKLSTLKVECKDLYEKVE 329 (812)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 329 (812)
--.|.+|...|-.... ++-+..-.|++.-+.-+.++++||+++... |-||-+++.+..=--.|-..|-
T Consensus 157 kd~L~~dn~~Le~l~~---~n~~~~~~L~~yI~agel~~eel~~~i~~~~~~ka~~~~q~~v~~v~~~~~~~~~L~qRv~ 233 (386)
T COG3853 157 KDELTRDNKMLELLYE---KNREYFEHLEKYIAAGELKDEELETEIIPELKTKAESGNQMDVQQVNELTLFINRLEQRVY 233 (386)
T ss_pred hHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666655443 345677789999999999999998765432 3334444444433223334444
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 003536 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (812)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (812)
.|+..+-=|-..+-|--++-.-|++|.+||+..
T Consensus 234 Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~sa 266 (386)
T COG3853 234 DLLLARMVALQTAPQIRLIQRNNQELIEKIQSA 266 (386)
T ss_pred HHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHH
Confidence 454444444444444444555688888888763
No 372
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.02 E-value=3.9e+02 Score=29.17 Aligned_cols=45 Identities=9% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHHHHHhhHHh
Q 003536 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEE 428 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 428 (812)
+.|..+|+.++.++..-++++..-+..++.- ..||.++|..+-..
T Consensus 177 ~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~ 222 (240)
T cd07667 177 PKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADK 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666655555432 34566666655443
No 373
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=48.63 E-value=8.2e+02 Score=32.82 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=20.8
Q ss_pred hhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 003536 295 SSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 343 (812)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (812)
..+.++.+++-.+-.++-.+.-++.|=-.+.++...+...+.++.+-..
T Consensus 802 k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~ 850 (1294)
T KOG0962|consen 802 KEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVI 850 (1294)
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444445544444444333
No 374
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=48.56 E-value=2.9e+02 Score=28.24 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=40.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (812)
..-+.|+++-.+|...+.+++.|+..-... ....++|+..-..+ |.++... +| .++-|+++|+.
T Consensus 33 ~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L------~~q~~~ek~~r~~~----e~~l~~~-Ed-----~~~~e~k~L~~ 96 (158)
T PF09744_consen 33 RVLELLESLASRNQEHEVELELLREDNEQL------ETQYEREKELRKQA----EEELLEL-ED-----QWRQERKDLQS 96 (158)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHH----HHHHHHH-HH-----HHHHHHHHHHH
Confidence 445667777777776666666666532211 22233333332222 2222211 23 34678889999
Q ss_pred HHHHHHHHHHH
Q 003536 327 KVENLQGLLAK 337 (812)
Q Consensus 327 ~~~~~~~~~~~ 337 (812)
+|+.|+..-..
T Consensus 97 ~v~~Le~e~r~ 107 (158)
T PF09744_consen 97 QVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHH
Confidence 99998875433
No 375
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=48.49 E-value=26 Score=39.25 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=37.9
Q ss_pred CCCCCeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 003536 508 ISSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (812)
Q Consensus 508 ~~~~MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VItPkY~~i 558 (812)
...+..|+-|.. ..+||.|. +|.-|++.|.++|+.|.|+++.|+..
T Consensus 31 ~~~~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 31 YRLPVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred CCCCCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 455666776665 25899997 89999999999999999999999864
No 376
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=48.29 E-value=22 Score=42.67 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=17.5
Q ss_pred ccchhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Q 003536 130 TSQLDNLISMIRNAEKN-ILLLNEARVQALEDLHKILQ 166 (812)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (812)
+.+-|+..+|.--+-.- --.=-.-|-.-..|..|.++
T Consensus 245 ~~eaEEvAtfyA~mle~ey~tk~vF~~NFf~Dwrk~m~ 282 (759)
T KOG0981|consen 245 TPEAEEVATFYAAMLEHEYATKEVFRKNFFNDWRKVMT 282 (759)
T ss_pred CHHHHHHHHHHHHHHhcchhccHHHHHHHHHHHHHHhh
Confidence 44556766665432110 01111234555666667776
No 377
>PRK11519 tyrosine kinase; Provisional
Probab=48.26 E-value=6.3e+02 Score=31.35 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 003536 285 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (812)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (812)
-|+++-..++..|.+.|.++...+.. ..+-.+..|-+...+.+..++..+..
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~-~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQD-KDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554443 22223444545555555555554444
No 378
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.08 E-value=2.6e+02 Score=32.06 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHhcchhhhHHhhcCc
Q 003536 385 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLST 464 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~lLL~id~~~l~~~~~~ 464 (812)
.-++|++..+|+|..--..++..+.+|..-++| .|.+++. .+--..++.++.--+. ++-+|+-=+. =+..
T Consensus 246 ~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n-~~~~~~D~~~~~~~~l--~kq~l~~~A~----d~ai 315 (365)
T KOG2391|consen 246 IGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAEN-LEALDIDEAIECTAPL--YKQILECYAL----DLAI 315 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhcc-CcCCCchhhhhccchH--HHHHHHhhhh----hhHH
Confidence 346788888888888888999999999999988 5555555 3332333333322122 2222211111 1334
Q ss_pred HHHHHHHHHHHhhcCcchhHhhh
Q 003536 465 SEAKLLREMVWKRNGRIRDAYME 487 (812)
Q Consensus 465 ~e~~~l~~~v~~~~~~~~d~y~~ 487 (812)
||+..--++..++-.-.++.|+.
T Consensus 316 eD~i~~L~~~~r~G~i~l~~yLr 338 (365)
T KOG2391|consen 316 EDAIYSLGKSLRDGVIDLDQYLR 338 (365)
T ss_pred HHHHHHHHHHHhcCeeeHHHHHH
Confidence 55544445555566678889985
No 379
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.05 E-value=6.2e+02 Score=31.23 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh-hhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 003536 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (812)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (812)
|++.++..-..+.-+. +++++=...-..++ +++..|.+-...++. -|+.+-+++..--.-..+++-.+.++||.
T Consensus 108 ~~~~~~~~~~~~~~~~---~~~e~e~~~~~~k~--~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 108 AKDTYEVLCAKSNYLH---RCQEKESLKEKEKR--KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhhhcccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444333333 34444433333333 677777776665553 46666666665566677778778777776
Q ss_pred chh----hHHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 003536 400 SDE----EIHSYVQLYQESVKEFQDTLHSLKEESKKR 432 (812)
Q Consensus 400 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (812)
-.+ .++.-+.+|+..+.+-....+..-++=+..
T Consensus 183 ~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~ 219 (611)
T KOG2398|consen 183 IEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLT 219 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Confidence 544 466667788887777666666655555543
No 380
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=47.56 E-value=28 Score=32.51 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=20.5
Q ss_pred CCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 003536 528 GGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 528 GGLGdV--V~~LsKALqklGheV~VItPk 554 (812)
|.-|++ .-.|+++|.++||+|++.++.
T Consensus 7 Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 555554 458899999999999998865
No 381
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.39 E-value=1.6e+02 Score=36.73 Aligned_cols=124 Identities=26% Similarity=0.224 Sum_probs=69.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCc
Q 003536 141 RNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSE 220 (812)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (812)
+|-|||- -|+.-=..|=++|.+-+. -++|-.---.|..|+++.-+.-.-...--.+++-++.+++.+-.||-.-.--+
T Consensus 109 q~eekn~-slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 109 QNEEKNR-SLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE 186 (916)
T ss_pred hhHHhhh-hhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 445544556666776666 55554433445555655533333333334556667777777777765431111
Q ss_pred ccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 003536 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (812)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (812)
. +|... +..-.+.+- +-|+.-+.|-|--++|++.|-+++..++..-
T Consensus 187 e------mneeh-----~~rlsdtvd---ErlqlhlkermaAle~kn~L~~e~~s~kk~l 232 (916)
T KOG0249|consen 187 K------MNEEH-----NKRLSDTVD---ERLQLHLKERMAALEDKNRLEQELESVKKQL 232 (916)
T ss_pred H------hhhhh-----ccccccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11100 001122222 6677778899999999999999888887543
No 382
>PLN00016 RNA-binding protein; Provisional
Probab=47.38 E-value=21 Score=39.69 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 508 ~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
...+++|+.++. +.||.|.+-..|++.|.+.||+|+++....
T Consensus 49 ~~~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 49 AVEKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 344577886654 358888888899999999999999998764
No 383
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.14 E-value=2.2e+02 Score=31.53 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=89.4
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 003536 143 AEKNILLLNEA-RVQALEDLHKILQEKEALQGE--INALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (812)
Q Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (812)
.-.|..|=|+. |-.=|+-|=.|. +.||.. -++=+.+|.+.++-++--.-.++.|.-|...|+.+...--..
T Consensus 112 IAsNc~lkS~~~RS~yLe~Lc~II---qeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~--- 185 (269)
T PF05278_consen 112 IASNCKLKSQQFRSYYLECLCDII---QELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIY--- 185 (269)
T ss_pred HhhccccCcHHHHHHHHHHHHHHH---HHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH---
Confidence 34566665543 444444444444 445542 255578888999988888889999999988888765432211
Q ss_pred cccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 003536 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 299 (812)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (812)
........|-...+.+++..+.+|... .+-+...|+|-+.+...+.+
T Consensus 186 ------------------------------~~~~~~e~eke~~~r~l~~~~~ELe~~---~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 186 ------------------------------DQHETREEEKEEKDRKLELKKEELEEL---EEELKQKEKEVKEIKERITE 232 (269)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 111222223333344566666655443 55666777777777777777
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 003536 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (812)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (812)
+=.+|..+....++++.-= ..++-||++++
T Consensus 233 ~~~rl~~l~~~~~~l~k~~---~~~~sKV~kf~ 262 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSKTI---KSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 7777777766666655322 23677777764
No 384
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=47.08 E-value=27 Score=36.20 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
+||.|.+-..|++.|.+.||+|.++.+.
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3778888899999999999999988654
No 385
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.97 E-value=1.8e+02 Score=35.39 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 003536 159 EDLHKILQEKEALQGEINALEMRLAETDARI 189 (812)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (812)
++++++..+-.+|+.+++.|+.++++...++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 386
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.94 E-value=73 Score=28.86 Aligned_cols=46 Identities=30% Similarity=0.353 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 003536 261 SLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSI 306 (812)
Q Consensus 261 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (812)
.++.|...+...|.. .+..+..+-.|+++...++..+++++.+|-+
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444432 2334455666666667777777777766654
No 387
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.79 E-value=1.4e+02 Score=26.71 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 003536 337 KATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (812)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (812)
..-.++.+| ++..+-|+.+|+.|++.-.... -.-+.|++.|..|++.-....+|++.
T Consensus 8 ~LE~ki~~a---veti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 8 QLEEKIQQA---VETIALLQMENEELKEKNNELK---EENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355555 3445667777777776432222 33455667777777777666666653
No 388
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.61 E-value=2.5e+02 Score=29.23 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (812)
.|...++|++++.+|++.|+ ...+..++.+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~--~~~~~Dp~~i 137 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE--KYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCHHHH
Confidence 45556667777777777776 3333445444
No 389
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=46.58 E-value=3.5e+02 Score=31.57 Aligned_cols=134 Identities=31% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhh-hhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccc
Q 003536 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (812)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (812)
+++|+.|+.----|+..+..|+.++-.-=.=|--+-| |+.+.+.||+||..|. ||-|
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt-eLqQ--------------------- 323 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT-ELQQ--------------------- 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---------------------
Q ss_pred ccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 003536 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (812)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (812)
|.|.-||++|... +||+.-.--||+ ||++.-+..-|.-++||.-
T Consensus 324 ---------------------------nEi~nLKqElasm---eervaYQsyERa------RdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 324 ---------------------------NEIANLKQELASM---EERVAYQSYERA------RDIQEALESCQTRISKLEL 367 (455)
T ss_pred ---------------------------HHHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhH-HHHHHH--HHHHHHHHhhhhhhHHHHh
Q 003536 317 LKVECKDL-YEKVEN--LQGLLAKATKQADQAISVL 349 (812)
Q Consensus 317 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 349 (812)
.+.+-.-. -|-++| -+.||.++-|-.=.-..||
T Consensus 368 ~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~Vl 403 (455)
T KOG3850|consen 368 QQQQQQVVQLEGLENAVARRLLGKFINIILALMTVL 403 (455)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
No 390
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=46.39 E-value=2.9e+02 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhhhhh
Q 003536 265 DIKVLKAELNSVKDAD 280 (812)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (812)
|+..++..+...+...
T Consensus 31 d~~~~~~~l~~~~~~~ 46 (213)
T cd00176 31 DLESVEALLKKHEALE 46 (213)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5555555554444333
No 391
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.05 E-value=4.6e+02 Score=29.14 Aligned_cols=173 Identities=27% Similarity=0.330 Sum_probs=95.6
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 003536 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (812)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (812)
+|-.--|.=-+.+|...+.++.+|.++.+. ...+|+| |++.|.++|-+...++.++-.|. +|-..+-||.|
T Consensus 13 eE~~ywk~l~~~ykq~f~~~reEl~EFQeg---SrE~Eae---lesqL~q~etrnrdl~t~nqrl~---~E~e~~Kek~e 83 (333)
T KOG1853|consen 13 EEDQYWKLLHHEYKQHFLQMREELNEFQEG---SREIEAE---LESQLDQLETRNRDLETRNQRLT---TEQERNKEKQE 83 (333)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333334444577888888889999888754 4455554 78888888888888888877654 33334555544
Q ss_pred HHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHH---H---hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 003536 330 NLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEES---L---DEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (812)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (812)
.-.....+ |..+----|.| -..||+-|.+||.. | +.|.||-+ +++.|--..--++..-||.-|.+
T Consensus 84 ~q~~q~y~---q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sl--eDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 84 DQRVQFYQ---QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSL--EDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhH
Confidence 43333222 22111111111 12344555555431 2 34555533 33333333333455556655432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhc--cCCCCCCCCHH
Q 003536 400 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRA--VHEPVDDMPWE 444 (812)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~m~~~ 444 (812)
- +..-+||.+..+--..|..|-..+. -+.|---||++
T Consensus 159 k--------e~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss 197 (333)
T KOG1853|consen 159 K--------EVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSS 197 (333)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccc
Confidence 1 2235677777777667776666655 34566678876
No 392
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=45.50 E-value=3e+02 Score=26.79 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 003536 383 NELMQQKMKLLEERL 397 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (812)
.+.|-.++..+.+++
T Consensus 161 ~~~l~~~~~~l~~~l 175 (202)
T PF01442_consen 161 RESLEEKAEELKETL 175 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444444
No 393
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=45.15 E-value=5.1e+02 Score=29.44 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHhcchhhhHHhhcCcHHHHHHHHHHHhhcCcchhHhhhhhhhhhhhhHHhhhhccCCCCCCCCeE
Q 003536 435 HEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHV 514 (812)
Q Consensus 435 ~~~~~~m~~~~~~~lLL~id~~~l~~~~~~~e~~~l~~~v~~~~~~~~d~y~~~~~~~~~e~~~~~~~~~~~~~~~~MKI 514 (812)
+-.|-++|.-+|.. | -++.+...+ +.-...|+.+|-.. ++..-+....+.+.+.+. . +.++|
T Consensus 32 d~~v~~~~~~~~~~-l---~~~I~~~R~--~~~~~~Y~~igg~s------PL~~~T~~q~~~L~~~L~---~---~~~~V 93 (320)
T COG0276 32 DRRVIELPRPLWYP-L---AGIILPLRL--KKVAKNYESIGGKS------PLNVITRAQAAALEERLD---L---PDFKV 93 (320)
T ss_pred CCCCCCCchhhhhh-h---hhhhhhhcc--HHHHHHHHHhcCCC------ccHHHHHHHHHHHHHHhC---C---CCccE
Confidence 44566788888886 3 344433322 23457889999444 333333334444554443 2 14444
Q ss_pred EEEeccc-CCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 003536 515 IHIAAEM-APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (812)
Q Consensus 515 L~ISsE~-aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~ 557 (812)
. +++.| .|+ +.+-..+|.+.|.+=.|+.|.|+.
T Consensus 94 ~-~amry~~P~---------i~~~v~~l~~~gv~~iv~~pLyPq 127 (320)
T COG0276 94 Y-LAMRYGPPF---------IEEAVEELKKDGVERIVVLPLYPQ 127 (320)
T ss_pred E-EeecCCCCc---------HHHHHHHHHHcCCCeEEEEECCcc
Confidence 4 55555 565 334446677789888888888863
No 394
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=44.72 E-value=77 Score=37.71 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+..+++..+ .=|+|=+||.|=.++ |.+++.. ....++.|+.|.+ ||...+..| +|.
T Consensus 136 ~FAd~i~~~~~----~gDiIWVhDYhL~L~-P~mlR~~----~~~~~IgfFlHiP-----fPssEvfr~-lP~------- 193 (486)
T COG0380 136 KFADKIVEIYE----PGDIIWVHDYHLLLV-PQMLRER----IPDAKIGFFLHIP-----FPSSEVFRC-LPW------- 193 (486)
T ss_pred HHHHHHHHhcC----CCCEEEEEechhhhh-HHHHHHh----CCCceEEEEEeCC-----CCCHHHHhh-Cch-------
Confidence 45554444332 339999999999888 4555542 2356899999976 333322211 111
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhh--------c-cCccc-ccc---cCCCCeEEEeCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG--------G-QGLHS-TLN---FHSKKFVGILNGIDTDAWN 767 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~--------G-~GL~~-lL~---~~~eKI~gIpNGID~d~Wn 767 (812)
. .=...|+..||.|-.=++.|++-| + .|..+ ..+ .+..++..+|=|||+..+.
T Consensus 194 -------r---~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~ 259 (486)
T COG0380 194 -------R---EEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFE 259 (486)
T ss_pred -------H---HHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHH
Confidence 0 112346667777777777777651 0 00000 011 1235677888899986653
No 395
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=44.71 E-value=5.3e+02 Score=29.49 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=9.5
Q ss_pred HCCCeEEEEecCCC
Q 003536 543 KKGHLVEIVLPKYD 556 (812)
Q Consensus 543 klGheV~VItPkY~ 556 (812)
+.|-.|.|....|+
T Consensus 309 ~~G~~v~v~~~~~~ 322 (421)
T TIGR03794 309 RPGMSVQITPSTVK 322 (421)
T ss_pred CCCCEEEEEEcccc
Confidence 46678888766554
No 396
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.55 E-value=1.3e+02 Score=28.38 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=26.7
Q ss_pred hcchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 003536 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLS 305 (812)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (812)
+.++.|....+..|.. +...+.++..|++.-..|+..+++++++|.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555565555554433 223356666666666666666666666654
No 397
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.19 E-value=3.6e+02 Score=27.32 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=27.9
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (812)
-.+++.+|..|..++.-+..+..+|....+..+-+-.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~ 41 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL 41 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 3467788888888888888888888777776665443
No 398
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.10 E-value=3.6e+02 Score=30.83 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003536 381 QYNELMQQKMKLLEERLQ 398 (812)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (812)
+--+.++..++.||+|+.
T Consensus 368 ~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 368 ENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333455555666666554
No 399
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=43.56 E-value=3.7e+02 Score=29.50 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 003536 356 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (812)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (812)
++++++.+..++...+++..-+..+.--+..+.+++..+.++.
T Consensus 127 ~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 127 QNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556555555444444444445555554444
No 400
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=43.42 E-value=5.2e+02 Score=28.97 Aligned_cols=181 Identities=21% Similarity=0.230 Sum_probs=88.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-LESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 327 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (812)
+.-++.|.+|=..|.+++..+..++.+.+..--..+.--.++.. +..++.+++..+..-...+ . .+|+.
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l---~-------~L~~~ 75 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSL---P-------ELDEA 75 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHH
Confidence 45577788888888888888888888887766666655555443 3333444444433222211 1 23333
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003536 328 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (812)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (812)
.+....-.++....-..+..++.+++.|.+=+ .|-..++.+.-...-.|. ..+..-++.|..|+.. ..-++
T Consensus 76 ~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diL-ElP~Lm~~ci~~g~y~eA-----Lel~~~~~~L~~~~~~-~~lv~-- 146 (338)
T PF04124_consen 76 CQRFSSKAQKISEERKKASLLLENHDRLLDIL-ELPQLMDTCIRNGNYSEA-----LELSAHVRRLQSRFPN-IPLVK-- 146 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhcccHhhH-----HHHHHHHHHHHHhccC-chhHH--
Confidence 33333333332233334444444444433221 112222222111111111 2344556666666654 12222
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHH-HHHHHhcchh
Q 003536 408 VQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF-WSRLLLIIDG 455 (812)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~-~~~lLL~id~ 455 (812)
.+.++....-+..+..|... +..| =.+|.-+ +-.+|-|++.
T Consensus 147 -~i~~ev~~~~~~ml~~Li~~-----L~~~-l~l~~~ik~v~~Lrrl~~ 188 (338)
T PF04124_consen 147 -SIAQEVEAALQQMLSQLINQ-----LRTP-LKLPACIKTVGYLRRLPV 188 (338)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-----HcCc-ccHHHHHHHHHHHHHhcc
Confidence 23344445556666666653 5555 3455555 6677877743
No 401
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=43.38 E-value=33 Score=40.50 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.5
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
-||+.++ |. ..+.--.++..++++|+++||+|+|++|..
T Consensus 21 ~kIl~~~----P~-~~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVF----PT-PAYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEc----CC-CCCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4577664 32 246677889999999999999999999864
No 402
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=43.35 E-value=4.1e+02 Score=27.85 Aligned_cols=100 Identities=27% Similarity=0.431 Sum_probs=52.4
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHhh-----hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH
Q 003536 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVLQ-----QNQELRKKVDKLEESLDEANIYKLSSEKMQQYN 383 (812)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (812)
++|+..+--|.-|=...+..+.++.+|.+.-..+. ..|+ .+-+++-|.+||+-.=. -+-+|..--
T Consensus 64 ~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~-------E~~rLt~~Q 136 (178)
T PF14073_consen 64 SQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEK-------EYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 45555666788888889999999988765433221 1111 13345544444432111 112222222
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 003536 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTL 422 (812)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (812)
-+-.-||+.||++|++--++ =.+.|+--.++|--|
T Consensus 137 ~~ae~Ki~~LE~KL~eEehq----RKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 137 SLAETKIKELEEKLQEEEHQ----RKLVQDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhH
Confidence 34456778888888754332 233444445555433
No 403
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.91 E-value=93 Score=33.82 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 003536 315 STLKVECKDLYEKVENLQGLLAKATKQADQA 345 (812)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (812)
.+|+-|-..||||+-=||..=.+++...+.+
T Consensus 117 ~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~ 147 (248)
T PF08172_consen 117 ESLRADNVKLYEKIRYLQSYNNKGSGSSSSA 147 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCccc
Confidence 3455555569999999998876544443333
No 404
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.68 E-value=7.9e+02 Score=30.90 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 003536 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (812)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (812)
|..+..+|++.+..|+.+..--+-++|.-+-.+.-|.....++..|...+.+
T Consensus 386 qea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~R 437 (739)
T PF07111_consen 386 QEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNR 437 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456678888888888877766667775555555555555555555555544
No 405
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.65 E-value=30 Score=34.55 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
+|| |.++...++.|.+.|++|+||.|..
T Consensus 19 vGG-G~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 19 IGG-GKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred ECC-CHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 355 8889999999999999999998764
No 406
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.58 E-value=1.4e+02 Score=31.16 Aligned_cols=95 Identities=24% Similarity=0.317 Sum_probs=58.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (812)
++|+..|..+|.-|-+ .+..|.++++..++.|++|-|-|+.-+- --++-.|+-||+..-+++
T Consensus 78 ~eel~~ld~~i~~l~e-----------------k~q~l~~t~s~veaEik~L~s~Lt~eem-Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTE-----------------KVQSLQQTCSYVEAEIKELSSALTTEEM-QEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666666655544433 3445567788889999999888765321 123455788999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 003536 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE 363 (812)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (812)
+++.+-..-.|...-.+ |-...|+-.+.-.|.+
T Consensus 140 ~~~k~g~~~vtpedk~~--v~~~y~~~~~~wrk~k 172 (201)
T KOG4603|consen 140 KNIKAGTNHVTPEDKEQ--VYREYQKYCKEWRKRK 172 (201)
T ss_pred HHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHH
Confidence 99877555555444444 4444554444444433
No 407
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.55 E-value=8e+02 Score=31.46 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHH
Q 003536 382 YNELMQQKMKLLEERLQRSDEEIH 405 (812)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~ 405 (812)
.+....||.-.|-+|++..+-.|.
T Consensus 849 e~~~ieq~ls~l~~~~k~~~nli~ 872 (970)
T KOG0946|consen 849 ELKLIEQKLSNLQEKIKFGNNLIK 872 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344555555556566655554443
No 408
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.44 E-value=43 Score=31.06 Aligned_cols=19 Identities=21% Similarity=0.634 Sum_probs=12.8
Q ss_pred HhhhHHHHHHHHHHhhhcc
Q 003536 199 VELLEDQLQKLQHELTHRG 217 (812)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ 217 (812)
+.++-+..+..+.-+..|+
T Consensus 4 ik~ir~n~e~v~~~l~~R~ 22 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG 22 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCHHHHHHHHHHcC
Confidence 3345556777777888776
No 409
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.19 E-value=19 Score=32.64 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.4
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhh
Q 003536 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (812)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (812)
++.|.+||..||..|+.|+++|...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999988877543
No 410
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.81 E-value=31 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 528 GGLGdVV~~LsKALqklGheV~VItPk 554 (812)
-|+|.+-+.+++.|.+.||+|.+|-..
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 488999999999999999999999544
No 411
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=41.77 E-value=1e+02 Score=28.46 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=48.2
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR-SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
|+||+.+-++.+. +|+ .-+|.|+|.||.+.++ -+.||..-|+-+.=+..++...|...+.
T Consensus 2 KleKi~~eieK~k------~Ki----ae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 2 KLEKIRAEIEKTK------EKI----AELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred hHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6777777777664 455 5678899999988765 4789999999999899999999888776
No 412
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.67 E-value=5e+02 Score=28.33 Aligned_cols=67 Identities=10% Similarity=0.397 Sum_probs=43.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHh
Q 003536 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE-SVKEFQDTLHS 424 (812)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 424 (812)
|+.+.+..|-.++++++-|... .++ .+.+.+.++.+|++.+.....|+.-++-++. -+.+|..++.+
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~-----~~d-----r~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANK-----KAD-----RDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTD 221 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777666652 232 2578889999999999988888765554443 23444444443
No 413
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=41.41 E-value=4.3e+02 Score=27.46 Aligned_cols=91 Identities=19% Similarity=0.361 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHH-Hhhh-hHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003536 323 DLYEKVENLQGLLAKATKQADQAIS-VLQQ-NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (812)
++|+--.+-=.+...++|+.+++-+ +|-| +.-+-+.|+.|+..+..- +.. .+++.++.+|.|-. ..
T Consensus 12 a~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~--~~~-------~s~~~~~~vk~L~k---~~ 79 (165)
T PF09602_consen 12 AFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQF--KRE-------FSDLYEEYVKQLRK---AT 79 (165)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHH---HH
Confidence 5788888888888888999988743 3333 333677788888888764 333 33455555555533 44
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 003536 401 DEEIHSYVQLYQESVKEFQDTLHSL 425 (812)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (812)
.+.+..++.-|++-.+|.-.-++.|
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666665555544433
No 414
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=41.37 E-value=35 Score=36.97 Aligned_cols=34 Identities=38% Similarity=0.622 Sum_probs=27.6
Q ss_pred CeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEE
Q 003536 512 LHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIV 551 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VI 551 (812)
|+|+-|.+ | -||.|. ++.+|+-+|++.|..|.+|
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 56665654 2 488886 8899999999999999998
No 415
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.19 E-value=7e+02 Score=29.84 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=17.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHH
Q 003536 343 DQAISVLQQNQELRKKVDKLEES 365 (812)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ 365 (812)
+.|..+-|.|..+.+++|||+..
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888764
No 416
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=41.02 E-value=46 Score=37.91 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHhhhhhh
Q 003536 356 RKKVDKLEESLDEANIYKL 374 (812)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (812)
..+++.||......||-=+
T Consensus 178 ~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhhccCCceeEE
Confidence 4557777877788776543
No 417
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=40.97 E-value=9 Score=46.20 Aligned_cols=154 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred CcccchhhHhhhhhhhhhh-------cchhHHHHHHHHhhhhhh--hhhHHHHH----HhhhhhHHhhHHHHHhhhhcch
Q 003536 242 NSEIHSFSKELDSLKTENL-------SLKNDIKVLKAELNSVKD--ADERVVML----EMERSSLESSLKELESKLSISQ 308 (812)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 308 (812)
...+..|..+++.|++|-. .+++.|..+-.+|..-.+ ..+..+.- +....+-.+.|..|+..+..-+
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~ 220 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELE 220 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 3456666666666666654 455555555555544432 12221111 1122222333333333332222
Q ss_pred h----hhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHH
Q 003536 309 E----DVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE 384 (812)
Q Consensus 309 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (812)
+ -..++..|...|..||++.+.=+.--+.-. ........+--..++..|++|++ +...+|..+.+
T Consensus 221 ~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~--~~~~~ls~~~i~~l~~El~RL~~---------lK~~~lk~~I~ 289 (619)
T PF03999_consen 221 EEKEEREEKLQELREKIEELWNRLDVPEEEREAFL--EENSGLSLDTIEALEEELERLEE---------LKKQNLKEFIE 289 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh--hccCcchHHHHHHHHHHHHHHHH---------HHHHhHHHHHH
Confidence 1 224455566666667766553322222100 00011111111224444444443 23344455555
Q ss_pred HHHHHHHHHHHHHhhchhhHHH
Q 003536 385 LMQQKMKLLEERLQRSDEEIHS 406 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~ 406 (812)
-.++++..+=..++-|+++...
T Consensus 290 ~~R~ei~elWd~~~~s~eer~~ 311 (619)
T PF03999_consen 290 KKRQEIEELWDKCHYSEEERQA 311 (619)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHH
Confidence 5555555555555555555544
No 418
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.79 E-value=98 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH
Q 003536 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (812)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (812)
+|-+-...||.+++.+.++.. ..-.++..|.++|+.|-+.++.
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 588889999999988554432 4667888888888888887764
No 419
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=40.72 E-value=41 Score=37.97 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=36.8
Q ss_pred CCCCeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 003536 509 SSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VItPkY~~i 558 (812)
..+..|+-|.. ..+||.|. +|.-|++.|.++|+.|.|+++.|+..
T Consensus 53 ~~pvPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 53 RLGVPVVVVGN-----VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred cCCCCEEEECC-----ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 34566666654 35899997 89999999999999999999999863
No 420
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=40.64 E-value=4.9e+02 Score=27.94 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=35.0
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhhcch
Q 003536 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLSISQ 308 (812)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 308 (812)
|..++.+|+.++.-|..-+++|..+...=.+. ..|.....+|++.+-.++
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~ 132 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSS 132 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCC
Confidence 45788889999999998888888777654443 346777777877776655
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.61 E-value=37 Score=33.55 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 529 GLGdVV~~LsKALqklGheV~VItPk 554 (812)
|+|.+-..+++.|.+.||+|+++-+.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccc
Confidence 78899999999999999999998644
No 422
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.58 E-value=4.4e+02 Score=27.37 Aligned_cols=86 Identities=21% Similarity=0.277 Sum_probs=52.9
Q ss_pred hcchhHHHHHHHHhhhhhh----hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHH
Q 003536 260 LSLKNDIKVLKAELNSVKD----ADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENL 331 (812)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 331 (812)
..|+.-|..+...+..+.. .--.-..++++...++..+.+++.+...| ++|.+.---.+. ..+-+.++.|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k--~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK--ADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3344444444444433322 23334567888888888888888886655 556654333222 2456788888
Q ss_pred HHHHHHHhhhhhhHHH
Q 003536 332 QGLLAKATKQADQAIS 347 (812)
Q Consensus 332 ~~~~~~~~~~~~~~~~ 347 (812)
+..++.++.++++.-.
T Consensus 104 ~~~~~~~~~~~~~l~~ 119 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKE 119 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887777543
No 423
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=40.56 E-value=77 Score=40.10 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++++.+.. .=|+|=+||.|-.++| .+++.. +...++-|..|.+ ||...+..| +|
T Consensus 189 ~FA~~v~~~~~~---~~d~VWVhDYhL~llP-~~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP-------- 246 (854)
T PLN02205 189 IFADRIMEVINP---EDDFVWIHDYHLMVLP-TFLRKR----FNRVKLGFFLHSP-----FPSSEIYKT-LP-------- 246 (854)
T ss_pred HHHHHHHHHhCC---CCCEEEEeCchhhHHH-HHHHhh----CCCCcEEEEecCC-----CCChHHHhh-CC--------
Confidence 466666554421 1289999999998884 555432 3578999999977 443322110 11
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCccc-----ccc----cCCCCeEEEeCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLHS-----TLN----FHSKKFVGILNGIDTDAW 766 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~~-----lL~----~~~eKI~gIpNGID~d~W 766 (812)
+. .-+..|+..||.|-.-+..|++-|- .|++. .+. -+..++...|=|||++.|
T Consensus 247 ------~r---~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~ 314 (854)
T PLN02205 247 ------IR---EELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQL 314 (854)
T ss_pred ------cH---HHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHH
Confidence 01 1234577778888888888876510 01110 011 133457778889998765
No 424
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=40.21 E-value=5e+02 Score=27.86 Aligned_cols=82 Identities=29% Similarity=0.373 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccc
Q 003536 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANED 237 (812)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (812)
++.|+..|+-..+--.+-..||+||-- =||.+|+.||..=.+.+...+
T Consensus 5 v~~LQ~AL~~LQaa~ekRE~lE~rLR~----------------~lE~EL~~lr~qq~~~~~~~~---------------- 52 (205)
T PF12240_consen 5 VERLQQALAQLQAACEKREQLERRLRT----------------RLERELESLRAQQRQGNSSGS---------------- 52 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhccCCCCCC----------------
Confidence 456666666666655666677777632 278899999865444322210
Q ss_pred cccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhh
Q 003536 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESS 296 (812)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (812)
+ ..+ .++..|+..| .|-+|+|..||-|..-.+..
T Consensus 53 -----~-~~~----------------~~~~~L~~~L---rEkEErILaLEad~~kWEqk 86 (205)
T PF12240_consen 53 -----S-SPS----------------NNASNLKELL---REKEERILALEADMTKWEQK 86 (205)
T ss_pred -----C-CCC----------------CcHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 0 001 4556666664 45688888888776655443
No 425
>PLN02778 3,5-epimerase/4-reductase
Probab=40.09 E-value=46 Score=36.04 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=30.1
Q ss_pred cCCCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEe
Q 003536 504 TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 504 ~~~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VIt 552 (812)
.+.+....|||+. +||-|-+-..|++.|.+.|++|++..
T Consensus 2 ~~~~~~~~~kiLV----------tG~tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 2 NGTAGSATLKFLI----------YGKTGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCCCCCCeEEE----------ECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3556677899884 37777777888999999999997643
No 426
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=39.88 E-value=8.3e+02 Score=30.36 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=71.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHH-HHHHHH
Q 003536 134 DNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQL-QKLQHE 212 (812)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (812)
-.+..-++.++|++.---|-++.+||++...++|+-+.|+. ++++|+---. |..-|-+-..++.+-=- .+++.+
T Consensus 6 ~~~~~~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~---y~~~l~~l~~--k~~~q~~~~d~v~~~~~~q~~~~~ 80 (640)
T KOG3565|consen 6 RSVLRELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKE---YEEKLRSLCK--KFEFQSKSGDEVAESVSGQPLFSE 80 (640)
T ss_pred HHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHH---HHHHHHHhhh--HhhcCCcccchHHHHhccCcchhH
Confidence 34566778899999999999999999999999999888765 4555543322 22222222222210000 011111
Q ss_pred hhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 003536 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (812)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (812)
+.+ ..+.+...++.|+.||+..|..+++....+.+++...
T Consensus 81 ~lq----------------------------~~~~i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~ 120 (640)
T KOG3565|consen 81 LLQ----------------------------RAQQIATRLEILKIEDEEVKKSLEATLKTSLDLVAQR 120 (640)
T ss_pred HHH----------------------------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1346677788888899999988888877766655543
No 427
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.71 E-value=3.1e+02 Score=25.37 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003536 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (812)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (812)
+.|..++|.||.++..-.-..-....+..-...|+..-..|.++|..+....
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 3466667777766665443333334444444555555555555555555443
No 428
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.59 E-value=39 Score=29.06 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=34.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 293 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (812)
.+..++..|+.+...++...+.|+.++...+.+.+++..+-+++-++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 55677777777777777777888888888767888887777766543
No 429
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.98 E-value=8.9e+02 Score=30.42 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=34.5
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHh
Q 003536 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVA 192 (812)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (812)
....+.++-+-|.|-+|=+ +--++++=+..+++ .++.+-+.+.+.-+|-.|++..++...
T Consensus 177 ~~~~~~~~~s~l~~~eke~---~~~~~ql~~~~q~~-~~~~~~l~e~~~~~qq~a~~~~ql~~~ 236 (716)
T KOG4593|consen 177 QEMRAKRLHSELQNEEKEL---DRQHKQLQEENQKI-QELQASLEERADHEQQNAELEQQLSLS 236 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 3445667777788888743 44445544444444 344444456666667777766665544
No 430
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.86 E-value=52 Score=36.68 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=36.6
Q ss_pred CCCCeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 003536 509 SSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VItPkY~~i 558 (812)
..+..|+-|.. ..+||.|. ++.-|++.|.++|+.|.|+++.|+..
T Consensus 25 ~~~vPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 71 (311)
T TIGR00682 25 RAPVPVVIVGN-----LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSK 71 (311)
T ss_pred cCCCCEEEEec-----cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 34556666654 25799997 89999999999999999999999863
No 431
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=38.67 E-value=37 Score=35.23 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
+|| |.++...++.|.+.|++|+||.|.+
T Consensus 16 IGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 16 VGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 366 8999999999999999999999865
No 432
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=38.45 E-value=71 Score=37.83 Aligned_cols=111 Identities=17% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++++.++ .-|+|=+||.|-.++| -+++.. ....++-|-.|.+ ||...+..+ +|
T Consensus 112 ~FA~~v~~~~~----~~D~VWVHDYhL~llp-~~LR~~----~~~~~IgFFlHiP-----FPs~eifr~-LP-------- 168 (474)
T PRK10117 112 LLADKLLPLLK----DDDIIWIHDYHLLPFA-SELRKR----GVNNRIGFFLHIP-----FPTPEIFNA-LP-------- 168 (474)
T ss_pred HHHHHHHHhcC----CCCEEEEeccHhhHHH-HHHHHh----CCCCcEEEEEeCC-----CCChHHHhh-CC--------
Confidence 46655554432 3489999999999984 445542 2467899999987 333222110 11
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCccc----cc--ccCCCCeEEEeCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLHS----TL--NFHSKKFVGILNGIDTDAWN 767 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~~----lL--~~~~eKI~gIpNGID~d~Wn 767 (812)
.+ .-+..|+..||.|-.=++.|++-|- .|++. .+ ..+..++...|=|||++.|.
T Consensus 169 --------~r-~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~ 234 (474)
T PRK10117 169 --------PH-DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIA 234 (474)
T ss_pred --------Ch-HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHH
Confidence 11 1234466677777777777765410 01110 01 11234577888899987654
No 433
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.43 E-value=2.1e+02 Score=30.88 Aligned_cols=84 Identities=11% Similarity=0.196 Sum_probs=52.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh-hhHH
Q 003536 268 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA-DQAI 346 (812)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (812)
.+..++..+.+++.+|..+++|...|...=...+..|..-++|+..|... -.-+....++. +.+.
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i--------------Ikqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI--------------IKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 34556667777778888888888888888777888887778887653322 11122222222 2233
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 003536 347 SVLQQNQELRKKVDKLEES 365 (812)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ 365 (812)
....+..-|.+.||++..+
T Consensus 85 r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777555
No 434
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=38.39 E-value=1.4e+02 Score=36.20 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHhHhhhhhhch---HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 003536 361 KLEESLDEANIYKLSS---EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 361 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (812)
++.+-|+..+..+++- ..-++.-+.++++++.+++.++..++++.++..-|.....+..+.|...++-.
T Consensus 192 ~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (646)
T PRK05771 192 EVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA 263 (646)
T ss_pred HHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555432 22355667888888999999999999999988888877776666665444433
No 435
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.20 E-value=1.6e+02 Score=27.48 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh-------HhhhhhhhHhhhHHHHHHHHHHhhhcccCcc
Q 003536 149 LLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR-------VAAQEKIHVELLEDQLQKLQHELTHRGVSEH 221 (812)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (812)
+.......+.++.+.|+.| ..++.++|.|+.=..++..|-. +......-.+++..+|--.+..-..
T Consensus 11 ~~~~l~~~~~~Ef~~I~~E-r~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~------ 83 (109)
T PF03980_consen 11 MIEFLEENCKKEFEEILEE-RDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKERE------ 83 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHH------
Q ss_pred cchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHH
Q 003536 222 SELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE 272 (812)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (812)
.|...++.+..||..|.+.|+.++++
T Consensus 84 -------------------------~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 84 -------------------------QLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhhcC
No 436
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=38.18 E-value=52 Score=36.18 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=13.8
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 003536 249 SKELDSLKTENLSLKNDIKVLKAELNSV 276 (812)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (812)
.++..-|+.|..-.|+|+..++......
T Consensus 215 r~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 215 RNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3444444555555555555555544443
No 437
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=38.05 E-value=2.9e+02 Score=31.45 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHhhhhchhh
Q 003536 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEIN--ALEMRLAETDA 187 (812)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 187 (812)
+.-|-+++.|-+.|+..+- +|-.++..+|...+..+++-+ +|..|++-++|
T Consensus 85 ~~~iKsvFSne~qdl~~Mk----~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEA 137 (323)
T PF08537_consen 85 WSSIKSVFSNEEQDLTRMK----NACTNINSRLPNRERKSGREERRLLKDRILRSEA 137 (323)
T ss_pred HHHHHHHhCccHHHHHHHH----HHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHH
Confidence 4556677777777776554 356678888888777776654 66777666644
No 438
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=37.91 E-value=55 Score=33.13 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.4
Q ss_pred CCeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEEe
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VIt 552 (812)
.|||+.|++- -||.|. ++..|+.+|+..|+.|.+|=
T Consensus 16 ~~kvI~v~s~------kgG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 16 EIKVLLITSV------KPGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CCcEEEEecC------CCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3788877752 366665 89999999999999998873
No 439
>PRK10869 recombination and repair protein; Provisional
Probab=37.53 E-value=8.1e+02 Score=29.57 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=29.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 003536 373 KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (812)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (812)
.+.++.|...+++|. .+..|+.+...+-+++..|.+-.+...+++..
T Consensus 292 ~~dp~~l~~ie~Rl~-~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 292 DLDPNRLAELEQRLS-KQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 456666666666654 46666777777777777766666666555444
No 440
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.47 E-value=4.9e+02 Score=27.86 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 003536 377 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (812)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (812)
+.++.||+.++..+...+..+....++|.+--.+.++.+--...+++.|+.
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777766666666666666665555566666644
No 441
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=37.18 E-value=1.2e+02 Score=38.97 Aligned_cols=112 Identities=22% Similarity=0.376 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHhccCCCCCCcEEEEecCCccCCCCChhhhhhcCCCcccccCCc
Q 003536 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (812)
Q Consensus 625 fFsrAaLelLkklg~kPDIIH~HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNleyqG~f~~~~L~~~GLp~e~f~~~D 704 (812)
.|+.++++.. ..=|+|=+||.|-.++ |.+++.. ....++-|-.|.+ ||...+..| +|
T Consensus 220 ~FA~~i~~~~----~~gD~VWVHDYHL~Ll-P~~LR~~----~p~~~IGfFlHiP-----FPs~Eifr~-LP-------- 276 (934)
T PLN03064 220 MFADVVNEHY----EEGDVVWCHDYHLMFL-PKCLKEY----NSNMKVGWFLHTP-----FPSSEIHRT-LP-------- 276 (934)
T ss_pred HHHHHHHHhc----CCCCEEEEecchhhHH-HHHHHHh----CCCCcEEEEecCC-----CCChHHHhh-CC--------
Confidence 3555554433 2338999999999998 4555542 3578999999977 333222111 11
Q ss_pred ccccCCCCCchhHHHHHHHHcCcEEecCcchhhhhc------cCccc---cccc--CCCCeEEEeCCCCCCCCCC
Q 003536 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG------QGLHS---TLNF--HSKKFVGILNGIDTDAWNP 768 (812)
Q Consensus 705 ~led~~~~~~vNllK~AI~~AD~VITVSptyAeE~G------~GL~~---lL~~--~~eKI~gIpNGID~d~WnP 768 (812)
.+ .-+..|+..||.|-.=+..|++-|- .|++. .+.. +..++.+.|-|||++.|.+
T Consensus 277 --------~r-~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~ 342 (934)
T PLN03064 277 --------SR-SELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIR 342 (934)
T ss_pred --------cH-HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHH
Confidence 11 1234566777777777777776510 01111 0111 1234668899999988864
No 442
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.13 E-value=43 Score=34.94 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=28.3
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~ 557 (812)
||||....-. =-+.-+..|.++|.+.||+|+|+.|....
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 7888776642 22344677888997788999999999764
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.11 E-value=5.2e+02 Score=32.43 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=16.6
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHh
Q 003536 343 DQAISVLQQNQELRKKVDKLEESLD 367 (812)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (812)
|..-.+.+....|.++++++-.++.
T Consensus 600 eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333346667778888888877774
No 444
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.07 E-value=88 Score=34.19 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcC
Q 003536 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQ 230 (812)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (812)
..||.||+.++.+++... |...+ .--.+|++|++||......+++ |.+..+-+.+
T Consensus 67 ~~L~~ev~~~~~~~~s~~-~~~~t-----~~~~ie~~l~~l~~~aG~v~V~-G~Gl~ITi~d 121 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR-RSVLT-----DDAALEDRLEKLRMLAGSVPVT-GPGLVITIDD 121 (247)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHh-----HHHHHHHHHHHHHHHhccCCCc-CCcEEEEecC
Confidence 345555555555554433 22222 2236788999999999998887 4555444433
No 445
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.93 E-value=1.9e+02 Score=32.34 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=21.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (812)
.+..++..+.+|..++++.+.....+|.....|.
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455666666777777777777777666655543
No 446
>PRK10037 cell division protein; Provisional
Probab=36.89 E-value=47 Score=34.98 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=26.4
Q ss_pred CeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEE
Q 003536 512 LHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIV 551 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VI 551 (812)
|+|+-|+.. =||.|. .+..|+.+|+++|+.|.+|
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 555545442 389887 5789999999999999998
No 447
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.50 E-value=5.2e+02 Score=34.48 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc--------
Q 003536 145 KNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-------- 216 (812)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (812)
|.|.|-.+.|+ +|+.-..--|.|+-|+..=.+=-.|.+.-|..|.+|-.|.==--.+|+..-+.|..+
T Consensus 1062 ~wislteelr~----eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi 1137 (1320)
T PLN03188 1062 KWISLAEELRT----ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGI 1137 (1320)
T ss_pred hheechHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhh----hhcchhHHHHHHHHhhhhhhhhhH
Q 003536 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADER 282 (812)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 282 (812)
|+-- ...-.+.+|.-|+..||-| ...||+.=..|+.+|.+.||.-.
T Consensus 1138 ~dvkkaaakag~kg-------------------~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~- 1197 (1320)
T PLN03188 1138 DDVKKAAARAGVRG-------------------AESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ- 1197 (1320)
T ss_pred HHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 003536 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (812)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (812)
+-=|-+=.|..-=..+|---+.|..+.|.|..+-+++|||
T Consensus 1198 ----------------------------------------aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1198 ----------------------------------------AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 003536 363 E 363 (812)
Q Consensus 363 ~ 363 (812)
+
T Consensus 1238 k 1238 (1320)
T PLN03188 1238 K 1238 (1320)
T ss_pred H
No 448
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=36.50 E-value=1.3e+02 Score=30.14 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=21.3
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHHHhhhhhh
Q 003536 293 LESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAKATKQADQ 344 (812)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (812)
-+++++.|++.+..-.-=+.++..+..|.-.- .+..+.|..+|.+|.+=+++
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k 84 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEK 84 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34445555554443333333333333332222 34444444444444444433
No 449
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=36.27 E-value=1.4e+02 Score=30.39 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH--HHHHHHH-HHHHhHhhhhhhchHHHHHHHH
Q 003536 308 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL--RKKVDKL-EESLDEANIYKLSSEKMQQYNE 384 (812)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 384 (812)
...+-+|+|++.=|.++..|.+.|+.++.....-...--+.|+..=+- ..=+-+. +.-|..........+.++++.+
T Consensus 55 ~~~~~~lsPie~Aie~i~~k~~eL~~~~~~~~~~~~~L~~~L~G~v~a~VngG~~~y~~~Fl~~~~~~~~~~~~~~~L~~ 134 (178)
T PF06920_consen 55 SKEEIELSPIENAIEDIEKKNKELEELINSYKPNINPLQMLLQGSVDAAVNGGPSKYAEAFLSPEYLHPEDKELVEKLKE 134 (178)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHS-SSS-TTHHHHHHHSSCHHCSHCCHHHHHHHHH
T ss_pred ccCcEEcCHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhcccccccccCchHHHHHHHcCccccCcccHHHHHHHHH
Confidence 345668999999999999999999988877541111111111110000 0001111 3333333334555667778888
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 003536 385 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKE 417 (812)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (812)
++.+.+..+++-|..-..=+.....-|++.+++
T Consensus 135 ~~~~~~~~~~~~L~~h~~~~~~~~~~lh~~le~ 167 (178)
T PF06920_consen 135 AFIDQLIVLERALELHKKLCSPEQRPLHEELES 167 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCChhHHHHHHHHHH
Confidence 888999888888876555444433334444433
No 450
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=36.13 E-value=5.5e+02 Score=27.14 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=59.8
Q ss_pred HhhhhhhhhhHHHHHHh--------hhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 003536 272 ELNSVKDADERVVMLEM--------ERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 343 (812)
Q Consensus 272 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (812)
-+...-+|+++...+.. .+.+=+..=+=||.=-.-+.+|++.+..|-. ++=+||++|+.+++--.+-..
T Consensus 27 ~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvi---nlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 27 AIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVI---NLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455566776654432 2333333334455555568899999999877 688999999998887443322
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhH
Q 003536 344 QAISVLQQNQELRKKVDKLEESLDE 368 (812)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (812)
.-+.|++.+.+.|-++|.-|..
T Consensus 104 ---~q~eq~~~~~~~v~~~~q~~~~ 125 (189)
T TIGR02132 104 ---AQQEQAPALKKDVTKLKQDIKS 125 (189)
T ss_pred ---HHHhhCchHHhHHHHHHHHHHH
Confidence 3456788888888888876653
No 451
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.03 E-value=59 Score=32.83 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=41.1
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchh
Q 003536 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQE 309 (812)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (812)
....+|...|+.+|..+|.|++.+--.||+.. +|++...-+++.|+.+.......+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999998764 5666666677766666666555444
No 452
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.01 E-value=41 Score=31.12 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=38.7
Q ss_pred hhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHh
Q 003536 172 QGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE 251 (812)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (812)
+.||.-+|.+++..-.++....----..+|-.++-+.|-+|+..- ...++..-++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l-------------------------~~~l~~~E~e 58 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNEL-------------------------KEKLENNEKE 58 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHH-------------------------HHHhhccHHH
Confidence 456777777777766666554444444555555555555554431 2224455788
Q ss_pred hhhhhhhhh
Q 003536 252 LDSLKTENL 260 (812)
Q Consensus 252 ~~~~~~~~~ 260 (812)
|..||.||.
T Consensus 59 L~~LrkENr 67 (85)
T PF15188_consen 59 LKLLRKENR 67 (85)
T ss_pred HHHHHHhhh
Confidence 999999985
No 453
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=35.80 E-value=1.5e+02 Score=36.38 Aligned_cols=145 Identities=20% Similarity=0.258 Sum_probs=76.7
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchh------hhhccccchhhhhh----HHHHHHHHHHHHHHHhhh-----hh
Q 003536 279 ADERVVMLEMERSSLESSLKELESKLSISQE------DVAKLSTLKVECKD----LYEKVENLQGLLAKATKQ-----AD 343 (812)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~ 343 (812)
.++....++.+.+.+++.+++++..+.+.+. |++-+...+..--. --++.+.+...++....- -.
T Consensus 111 ~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (660)
T COG1269 111 VEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEA 190 (660)
T ss_pred hhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhccchhhHhhcccceEEEEeeeehhhhhhHHHhhcccccchhhhcccc
Confidence 5666666666667777777777766655442 22222222211000 122333333333332221 01
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH--HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 003536 344 QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM--QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (812)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (812)
....|.-.-.+.-++|++.-+++ ....++.+..+. .++-.-+.++++..+..++.-..++..+.+.|+..+..-...
T Consensus 191 ~~~~v~~~~~~~~~~v~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 269 (660)
T COG1269 191 SVVIVVAHGAEDLDKVSKILNEL-GFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREI 269 (660)
T ss_pred ceEEEEEecccchHHHHHHHHhC-CcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223334455677766666 344444444432 445556677777777777777788888888888777776666
Q ss_pred HHh
Q 003536 422 LHS 424 (812)
Q Consensus 422 ~~~ 424 (812)
|+.
T Consensus 270 l~~ 272 (660)
T COG1269 270 LEI 272 (660)
T ss_pred HHH
Confidence 554
No 454
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=35.65 E-value=54 Score=37.90 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 506 ~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
.-+.++|||+. +||-|-+-..|++.|.+.|++|+++...
T Consensus 115 ~~~~~~mkILV----------TGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 115 GIGRKRLRIVV----------TGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred ccccCCCEEEE----------ECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33567799773 4888899999999999999999988643
No 455
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=35.64 E-value=60 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=36.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhH
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSL 297 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (812)
+|-.||+-+|||-..+|.|+++-+.....++ |.++-.||--.-||...
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q~---ekiflmekkfe~lekky 115 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQA---EKIFLMEKKFETLEKKY 115 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHH
Confidence 6789999999999999999999887665544 56666666555555433
No 456
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=35.40 E-value=7.7e+02 Score=29.74 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccc
Q 003536 167 EKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (812)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (812)
++|+|.+.|..|..|+.++.+++.=..+.+.. +..
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~-df~-------------------------------------------- 42 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYS-DFS-------------------------------------------- 42 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------------------------------------
Q ss_pred hhhHhhhhhhhhhhcchhHH-HHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 003536 247 SFSKELDSLKTENLSLKNDI-KVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (812)
+.......|-+.=..|.+|| ..++.+..+. ....+.....|...|...|++.+.-+ .+-
T Consensus 43 ~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~--i~~~l~~a~~e~~~L~~eL~~~~~~l------------------~~L 102 (593)
T PF06248_consen 43 PSLQSAKDLIERSKSLAREINDLLQSEIENE--IQPQLRDAAEELQELKRELEENEQLL------------------EVL 102 (593)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
Q ss_pred HHHHHHHHHHHHHh--hhhhhHHHHhhhhHHHHHHHHHH-HHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003536 326 EKVENLQGLLAKAT--KQADQAISVLQQNQELRKKVDKL-EESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (812)
Q Consensus 326 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (812)
+.+..+..+|+.+. ....+.+...+.=.+++..++.+ .....+..|++.=..++....+.+++.+-..=+++
T Consensus 103 ~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~l 177 (593)
T PF06248_consen 103 EQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERL 177 (593)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 457
>PRK13411 molecular chaperone DnaK; Provisional
Probab=35.29 E-value=1.7e+02 Score=35.71 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 003536 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 304 (812)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (812)
.++|+.++.++...++.|+....++.-+..||+-+-+++.++
T Consensus 504 ~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 504 SNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444444444
No 458
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=35.26 E-value=6.5e+02 Score=27.76 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (812)
+.+..|...+.+|..-.+++-.++.++..=+-.++.|++.++++.--+++++.+
T Consensus 250 ~~~~~L~~~l~kak~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~~~~ 303 (335)
T PF08429_consen 250 PSLDKLKDALQKAKEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKLEEL 303 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCCchH
Confidence 446667777777776666666666665555556777888888777777777644
No 459
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.14 E-value=3.3e+02 Score=30.67 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc--
Q 003536 139 MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-- 216 (812)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (812)
||.||+ |.--+-.=+-.++.+-...|+++..+.-|--.+ ..+++--...|--...+..++..||.+|.++
T Consensus 97 Mv~naQ-----LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 97 MVSNAQ-----LDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHhh-----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhhcCCCCcccccccCCcccchhhHh--------hhhhhhhhhcchhHHHHHHHHhhhhhh
Q 003536 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE--------LDSLKTENLSLKNDIKVLKAELNSVKD 278 (812)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (812)
+. ..++..-+...+++...-.+-.....|.|... |.-|-.|+-.|-+.|.-||.+|.+...
T Consensus 169 li~khGlVlv~~-~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 169 LIEKHGLVLVPD-ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHCCeeeCCC-CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhHHHHHHhhhhhH--------------------HhhHHHHHhhhhcchhhhhcc
Q 003536 279 ADERVVMLEMERSSL--------------------ESSLKELESKLSISQEDVAKL 314 (812)
Q Consensus 279 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 314 (812)
..+.-. --.+-..| ...|.|+-.||.-|--|+.-|
T Consensus 248 ~~~~~~-~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQeit~~ 302 (302)
T PF09738_consen 248 EGRRQK-SSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEITTL 302 (302)
T ss_pred cccccc-ccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhhccC
No 460
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.61 E-value=6.1e+02 Score=28.20 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhh-hhhhHhhhHHHHHHH
Q 003536 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKL 209 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 209 (812)
.++++..+...++++|+.++..+.+....|+...+ =+-+-+++++++..+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666654432 122445666665544
No 461
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.56 E-value=6.7e+02 Score=27.78 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003536 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (812)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (812)
-.|.++|+.|..+-. +.+..+++..+.-...|+.+.+..-++|.+.
T Consensus 123 a~L~rqlq~lk~~qq---------dEldel~e~~~~el~~l~~~~q~k~~~il~~ 168 (258)
T PF15397_consen 123 ANLVRQLQQLKDSQQ---------DELDELNEMRQMELASLSRKIQEKKEEILSS 168 (258)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555443 4455677788888888888888888888873
No 462
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.53 E-value=1.9e+02 Score=31.38 Aligned_cols=92 Identities=34% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 003536 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (812)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (812)
|-|-||.|.+.+|.+|.+ +.+|...|-..+.+||+++.+-|+ ..|.+--.-..|...+++
T Consensus 129 ~~~d~ke~~ee~kekl~E----------~~~EkeeL~~eleele~e~ee~~e----------rlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 129 EYMDLKEDYEELKEKLEE----------LQKEKEELLKELEELEAEYEEVQE----------RLKRLEVENSRLEEMLKK 188 (290)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhhhHHHHhhhhHHHHHHHHHHH---HHHhHhhhhhhchHHH
Q 003536 338 ATKQADQAISVLQQNQELRKKVDKLE---ESLDEANIYKLSSEKM 379 (812)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 379 (812)
.....-+|+++.|.|+ +++++-.|+++-++.+
T Consensus 189 ----------l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~ 223 (290)
T COG4026 189 ----------LPGEVYDLKKRWDELEPGVELPEEELISDLVKETL 223 (290)
T ss_pred ----------chhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
No 463
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.42 E-value=1.7e+02 Score=35.21 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=14.9
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 003536 287 EMERSSLESSLKELESKLSISQEDVAKLST 316 (812)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (812)
+.|...|+..-.|.+.-|..||++.-+|-+
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444555555555555555543
No 464
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=34.33 E-value=1.8e+02 Score=34.84 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCCCCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHH---------CCCeEEEEecCCCcccccc-----cccccc-e
Q 003536 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK---------KGHLVEIVLPKYDCMQYDR-----IDDLRA-L 569 (812)
Q Consensus 505 ~~~~~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqk---------lGheV~VItPkY~~i~~~~-----i~~L~g-v 569 (812)
+.+..+.++++++... ...||..+-+-+-+-++.. .|+.|.+++-.+..+.... ...+++ .
T Consensus 28 ~t~~~~~~~~~~~~~~----~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~ 103 (495)
T KOG0853|consen 28 STPEKPFEHVTFIHPD----LGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTP 103 (495)
T ss_pred ccccccchhheeeccc----cccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCC
Confidence 5567788899988654 3569999988888888888 9999999997776542110 011222 2
Q ss_pred eEEE-eeecCCceeeeEEEEE--eeCCeeEEEeCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCEEEE
Q 003536 570 DVVV-ESYFDGRLFKNKVWVS--TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHC 646 (812)
Q Consensus 570 ~V~V-~s~fdG~~~~~~Vw~~--~v~GV~VYfLd~~~ps~~F~R~~lYG~~Dd~~RfifFsrAaLelLkklg~kPDIIH~ 646 (812)
.+.+ ....+...- ..+.. ...++.+.++... +. +.+...++..- .-|..++..+++..+. ||++|-
T Consensus 104 ~i~vv~~~lP~~~~--~~~~~~~~~~~~~il~~~~~-~~-~k~~~~~d~~i------~d~~~~~~~l~~~~~~-p~~~~~ 172 (495)
T KOG0853|consen 104 PILVVGDWLPRAMG--QFLEQVAGCAYLRILRIPFG-IL-FKWAEKVDPII------EDFVSACVPLLKQLSG-PDVIIK 172 (495)
T ss_pred ceEEEEeecCcccc--hhhhhhhccceeEEEEeccc-hh-hhhhhhhceee------cchHHHHHHHHHHhcC-Ccccce
Confidence 2221 111111110 00111 1234555555421 00 00010111110 1133444455555544 999999
Q ss_pred cCcccchHHHHHHHHhccCCCCCCcEEEEecCCc
Q 003536 647 HDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE 680 (812)
Q Consensus 647 HDWhTA~Vapl~lk~y~~~gl~~iPvVfTIHNle 680 (812)
|-|-+.+...++... .+++-+++-|.++
T Consensus 173 i~~~~h~~~~lla~r------~g~~~~l~~~~l~ 200 (495)
T KOG0853|consen 173 IYFYCHFPDSLLAKR------LGVLKVLYRHALD 200 (495)
T ss_pred eEEeccchHHHhccc------cCccceeehhhhh
Confidence 999998885554321 3577788888764
No 465
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.11 E-value=7.3e+02 Score=28.01 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=19.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003536 141 RNAEKNILLLNEARVQALEDLHKILQEKEALQGEI 175 (812)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (812)
.+..++|-.+++-|--.-..+..+..+.++|-.++
T Consensus 16 ~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kv 50 (294)
T COG1340 16 KQLKEEIEELKEKRDELRKEASELAEKRDELNAKV 50 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777555455554444444444443
No 466
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.06 E-value=34 Score=27.92 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=13.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAEL 273 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (812)
+|..+.+.|+.||..|+..+..|+.++
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555443
No 467
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.99 E-value=6.2e+02 Score=27.12 Aligned_cols=8 Identities=63% Similarity=1.186 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 003536 406 SYVQLYQE 413 (812)
Q Consensus 406 ~~~~~~~~ 413 (812)
+||+.|+.
T Consensus 185 nYvqMy~r 192 (202)
T PF06818_consen 185 NYVQMYQR 192 (202)
T ss_pred HHHHHHHH
Confidence 57777764
No 468
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.85 E-value=4.6e+02 Score=27.62 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=28.7
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHH
Q 003536 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (812)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (812)
+-.+-++.+.|++|-.-...-|..+|+-..+|..-|..-+.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 33556777777777777777788888877777766664443
No 469
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.80 E-value=51 Score=33.94 Aligned_cols=51 Identities=37% Similarity=0.528 Sum_probs=19.7
Q ss_pred hhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhh
Q 003536 133 LDNLISMIR-NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI 197 (812)
Q Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (812)
||||=.+.- -.|+|.+|=++ |.|||.|+-+++-|.--+. |-++.++.|++.
T Consensus 2 LeD~EsklN~AIERnalLE~E------------LdEKE~L~~~~QRLkDE~R--DLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE------------LDEKENLREEVQRLKDELR--DLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 566666553 34666665433 3788888888877766665 334444555444
No 470
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.78 E-value=8.1e+02 Score=28.44 Aligned_cols=125 Identities=23% Similarity=0.328 Sum_probs=61.8
Q ss_pred HhhhhhhhhhHHHHHHhhhhhHHhhHH--------------HHHhhhhcchhhhhcc-ccchhhhhhHHHHHHHHHHHHH
Q 003536 272 ELNSVKDADERVVMLEMERSSLESSLK--------------ELESKLSISQEDVAKL-STLKVECKDLYEKVENLQGLLA 336 (812)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 336 (812)
.....++.|.-..+|||||..|...|. .||++|..-..---.+ +-|-.|||...-|...+..
T Consensus 130 haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegq--- 206 (561)
T KOG1103|consen 130 HAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQ--- 206 (561)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 345567777888888888887765442 1222222111111111 1234455543333222211
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh---------HhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003536 337 KATKQADQAISVLQQNQELRKKVDKLEESLD---------EANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (812)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (812)
.|++- .-+++.=...+.++++++. ||.+.|+-+| +....++|+-++...|.|-.--.+|+.|.
T Consensus 207 ----KA~ei---~Lklekdksr~~k~eee~aaERerglqteaqvek~i~E-fdiEre~LRAel~ree~r~K~lKeEmeSL 278 (561)
T KOG1103|consen 207 ----KAEEI---MLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEE-FDIEREFLRAELEREEKRQKMLKEEMESL 278 (561)
T ss_pred ----hHHHH---HHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2222222223555665543 3555555433 44467788888888887776666666663
No 471
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=3e+02 Score=27.15 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccc
Q 003536 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLV 239 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (812)
.++..+++-..||.++..+.|+...-++.++-.....--.+.+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l------------------------------------- 49 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL------------------------------------- 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh-HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 003536 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE-RVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (812)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (812)
..|..|--.+- |.+.|-+-..++.+|.+-+++-| |+..|++.-..++..+++|.+++..+..+-....+
T Consensus 50 ~eD~~vYk~VG--------~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~~ 119 (119)
T COG1382 50 DEDAPVYKKVG--------NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGGG 119 (119)
T ss_pred CcccHHHHHhh--------hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
No 472
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.59 E-value=2.5e+02 Score=33.19 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=39.9
Q ss_pred hhhhHHHHHHhhhhhH--------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 003536 278 DADERVVMLEMERSSL--------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (812)
Q Consensus 278 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (812)
+.-|-..+|.|-|+.+ -+|+.|...|+.+|..-.+++.++-.|--.=|..+|.|=
T Consensus 365 ~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~lc 427 (575)
T KOG4403|consen 365 EAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESLC 427 (575)
T ss_pred HHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555677888875 467888888888888888888888777555677776653
No 473
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.54 E-value=9.2e+02 Score=28.98 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhh
Q 003536 404 IHSYVQLYQESVKEFQDTLHSLKEES 429 (812)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (812)
|.+-+.=.++.++.|+..++.+-.++
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~~ 163 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGKE 163 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666555554443
No 474
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.23 E-value=59 Score=32.49 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
+++|++|+ .|-+.++.++..+++..|.+|++++|..
T Consensus 2 gl~i~~vG---------D~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVG---------DGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEES---------STTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEEC---------CCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 56777664 1347999999999999999999999986
No 475
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.17 E-value=1.1e+03 Score=29.75 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=24.8
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 003536 390 MKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 428 (812)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (812)
+....+.|+....++.--+++-+..|.++...|..++..
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~ 465 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKES 465 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 444556666677777777777777776666666655543
No 476
>CHL00194 ycf39 Ycf39; Provisional
Probab=33.03 E-value=59 Score=35.15 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
+||.|.+-..|+++|.+.||+|+++.+..
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 47788888889999999999999998653
No 477
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.91 E-value=4.1e+02 Score=24.73 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003536 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (812)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (812)
.+...||.-+...+.+-.+.-.-+..|.+..+.+..|+ ..+.+|+.--. =++..-+..+...+...-+.+.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~------vfv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN------VLVKQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh------HHhhccHHHHHHHHHHHHHHHH
Confidence 33344444444444343333333344444433333333 56667665443 1334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHh
Q 003536 406 SYVQLYQESVKEFQDTLHSLKEE 428 (812)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (812)
+-+.-+...++..+..+..++.+
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 478
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=32.89 E-value=5.5e+02 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 003536 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (812)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (812)
-..|++++...|+|+..+-+.-+.-|+.|-..+..|=..
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~~ 158 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPTN 158 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 345667788888888888777777777777777777553
No 479
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.88 E-value=9.3e+02 Score=28.88 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=46.9
Q ss_pred cchhHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhHHH-hhhhchhhhhhHhhhhhhhHhhhHHH
Q 003536 131 SQLDNLISMIRNAEKNILLLNEA----RVQALEDLHKILQEKEALQGEINALE-MRLAETDARIRVAAQEKIHVELLEDQ 205 (812)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (812)
.-|.-|.+.|.+..+|++-|-|- |+--++...+.+.+++.+.-+ --| .|+.|+.+-+.-.+++ .+-.|+.
T Consensus 293 ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e--~~e~~~IqeleqdL~a~~ee---i~~~eel 367 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE--DEEIRRIQELEQDLEAVDEE---IESNEEL 367 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHH---HHhhHHH
Confidence 45788899999999999988763 444444444444444433211 111 3455555555444442 2234566
Q ss_pred HHHHHHHhhh
Q 003536 206 LQKLQHELTH 215 (812)
Q Consensus 206 ~~~~~~~~~~ 215 (812)
-++||+||..
T Consensus 368 ~~~Lrsele~ 377 (521)
T KOG1937|consen 368 AEKLRSELEK 377 (521)
T ss_pred HHHHHHHHhc
Confidence 6888888865
No 480
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=32.68 E-value=91 Score=30.29 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.1
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCe-EEEEe
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHL-VEIVL 552 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGhe-V~VIt 552 (812)
|||+++.. .+|+ .+-.+.-+.++++++...||+ |.|+.
T Consensus 1 m~~~iv~~-~~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVT-GPAY--GTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEc-CCCC--CCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 78887765 4676 466678899999999999999 47764
No 481
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=32.24 E-value=6.7e+02 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=14.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhh
Q 003536 247 SFSKELDSLKTENLSLKNDIKVLKAELN 274 (812)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (812)
+|...++.++.|.-.+=+-=..|...|.
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L~ 85 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTLR 85 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666665544444444444443
No 482
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.18 E-value=5.7e+02 Score=26.23 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 003536 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (812)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (812)
|-.+...+.+-.+=.+.+.+|-+.++.++..+...++++=+ .|+-|+..--+.|+.|+.
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~----------evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIE----------EVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 55667778888888899999999999999999998888722 366777777788888876
No 483
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=32.06 E-value=48 Score=36.48 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=33.1
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
|||+++. .|+....--.+-...|..+.+++||+|.++.|..
T Consensus 1 m~~~~~~---~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQM---DPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEe---CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 7888885 5665555556778889999999999999999875
No 484
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=31.83 E-value=1.7e+02 Score=33.68 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=15.9
Q ss_pred hhhHhhhHHHHHHHHHHhhhc
Q 003536 196 KIHVELLEDQLQKLQHELTHR 216 (812)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (812)
..+++.+++++++|..+|+..
T Consensus 22 ~~~l~~~~~~~~~le~~~~~p 42 (364)
T TIGR00020 22 SLDPEKKKARLEELEKEMEDP 42 (364)
T ss_pred hCCHHHHHHHHHHHHHHhcCC
Confidence 455667788888888888764
No 485
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.79 E-value=6.1e+02 Score=28.48 Aligned_cols=111 Identities=26% Similarity=0.319 Sum_probs=55.3
Q ss_pred hhhhhhhhHHHHHHhhhhh----HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 003536 274 NSVKDADERVVMLEMERSS----LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL 349 (812)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (812)
-.+.+.+--+-+|.|||-- ||+.=.-|+++-....++-.+.++|+-|-..|-|-.++|+.--++.+.-
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd-------- 89 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD-------- 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH--------
Confidence 3445555555566666654 3443344444444555566677777777666666666554433332110
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003536 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (812)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (812)
-|-=.-+|--||.-|..+.- -.+.|.|.+|+++.-|.+|-...
T Consensus 90 --lq~Ke~qv~~lEgQl~s~Kk----------qie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 90 --LQVKESQVNFLEGQLNSCKK----------QIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred --HhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 01111234445544433321 23556666666666666554433
No 486
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.76 E-value=6.5e+02 Score=29.04 Aligned_cols=146 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhh
Q 003536 151 NEARVQALEDLH----KILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDV 226 (812)
Q Consensus 151 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (812)
||.+..|-.-|+ ||...-|-|..=-..+|.|--|+ .|-+.+.+-|-.||-..|.-++..+..
T Consensus 63 ~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~-------~qL~~qnqkL~nqL~~~~~vf~k~k~~------- 128 (401)
T PF06785_consen 63 KQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQES-------EQLQSQNQKLKNQLFHVREVFMKTKGD------- 128 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHhcch-------
Q ss_pred hhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh--------------
Q 003536 227 FANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-------------- 292 (812)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 292 (812)
.+-|-.-+..++|||.-|+-.+++++.+ ..|-+|+...|-+|-+.
T Consensus 129 ------------------~q~LE~li~~~~EEn~~lqlqL~~l~~e---~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 129 ------------------IQHLEGLIRHLREENQCLQLQLDALQQE---CGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred ------------------HHhhHHH------------------HHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 003536 293 ------------------LESSLKE------------------LESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (812)
Q Consensus 293 ------------------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (812)
||+.++| ++++=..+-.||. +.+-.|-|..-.||||..+
T Consensus 188 tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~--~ql~selkkivf~~enie~ 262 (401)
T PF06785_consen 188 TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVP--KQLVSELKKIVFKVENIEA 262 (401)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhH--HHHHHHHHHHHHHHhhHHH
No 487
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.70 E-value=2.4e+02 Score=25.06 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=44.1
Q ss_pred hhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 003536 254 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (812)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (812)
.|..|+.+|++++..+-.+++... .-...|-+||.+..++|.+ .-.+|..|-++++.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~---~~~k~L~~ERd~~~~~l~~-----------------a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHE---IENKRLRRERDSAERQLGD-----------------AYEENNKLKEENEALRK 61 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 577888888888888877765443 3445666788877666654 23456677788888877
Q ss_pred HHHH
Q 003536 334 LLAK 337 (812)
Q Consensus 334 ~~~~ 337 (812)
-|+.
T Consensus 62 el~~ 65 (69)
T PF14197_consen 62 ELEE 65 (69)
T ss_pred HHHH
Confidence 6654
No 488
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=31.63 E-value=69 Score=33.93 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=26.9
Q ss_pred CeEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEE
Q 003536 512 LHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIV 551 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VI 551 (812)
|+|+-|+.. | ||.|. .+..|+-+|+++|..|.|+
T Consensus 1 M~iI~v~n~-----K-GGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 1 MKLLTFCSF-----K-GGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred CeEEEEECC-----C-CCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 566666552 3 88887 5778899999999999888
No 489
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.55 E-value=2.2e+02 Score=26.34 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 003536 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (812)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (812)
|+-|.+.|..+...++...+++-.+..+|..+...=.+.++-+.-+..-+-.+.-+|.++..+..++..
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888887777766544444444444444455556666777666666544
No 490
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=31.30 E-value=56 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.9
Q ss_pred CeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCCCccc
Q 003536 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQ 559 (812)
Q Consensus 512 MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY~~i~ 559 (812)
|||+.|++ +| .+-..+.+.+.++||+|+.|.+.-..++
T Consensus 1 mKIaiIgA-------sG---~~Gs~i~~EA~~RGHeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGA-------SG---KAGSRILKEALKRGHEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEec-------Cc---hhHHHHHHHHHhCCCeeEEEEeChHhcc
Confidence 78998875 34 4445677888899999999998765553
No 491
>PF13166 AAA_13: AAA domain
Probab=31.06 E-value=1e+03 Score=28.90 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=6.9
Q ss_pred EEEEcCcc
Q 003536 643 IIHCHDWQ 650 (812)
Q Consensus 643 IIH~HDWh 650 (812)
||=.||++
T Consensus 565 iIlTHn~~ 572 (712)
T PF13166_consen 565 IILTHNLY 572 (712)
T ss_pred EEEeCcHH
Confidence 88999976
No 492
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.04 E-value=71 Score=34.86 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.8
Q ss_pred CCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 003536 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (812)
Q Consensus 511 ~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPkY 555 (812)
+|||++| |+|.+-+.+++.|.+.||+|+++.+.-
T Consensus 4 ~m~I~ii-----------G~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAIL-----------GAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEE-----------CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5788766 567888899999999999999987653
No 493
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=31.02 E-value=5e+02 Score=27.79 Aligned_cols=78 Identities=28% Similarity=0.349 Sum_probs=50.5
Q ss_pred HhhhhHHHHHHHHH-HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHH----HHHH
Q 003536 348 VLQQNQELRKKVDK-LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD-EEIHSYVQLYQESVKE----FQDT 421 (812)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~ 421 (812)
.|.+.| ++-||. |+.||.=+-++--.-+-+ -.|.+-+..|..-+++.| .++.+.|+-|-.+-|. +...
T Consensus 25 al~~~~--~k~ve~lLd~sL~LLD~c~~~rd~l----l~lKe~v~eLqsalRRr~~~~~~~~i~sy~~~rKk~kK~i~K~ 98 (231)
T PF03087_consen 25 ALSHHQ--EKWVEELLDGSLRLLDACGTFRDAL----LQLKEHVQELQSALRRRDDGSIESEIASYIRSRKKAKKEIAKL 98 (231)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 677775 788988888876666644 677788888998899888 4455555555555544 4444
Q ss_pred HHhhHHhhhh
Q 003536 422 LHSLKEESKK 431 (812)
Q Consensus 422 ~~~~~~~~~~ 431 (812)
+..+|.-..+
T Consensus 99 ~~~lk~~~~~ 108 (231)
T PF03087_consen 99 LRSLKRMSNK 108 (231)
T ss_pred HHHHHhhhcc
Confidence 4444544443
No 494
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=30.90 E-value=69 Score=35.01 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCCeEEEEecccCCcccCCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 003536 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (812)
Q Consensus 509 ~~~MKIL~ISsE~aP~aKvGGLGdVV~~LsKALqklGheV~VItPk 554 (812)
+..|+|++|.. |++|- .++..|++.||+|+++.+.
T Consensus 3 ~~~m~I~IiG~--------GaiG~---~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGT--------GAIGG---FYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEeC
Confidence 34689987742 66665 4556788889999999864
No 495
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=30.75 E-value=5.1e+02 Score=25.22 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhH----HHHHHHH-------HHHHHHhHhhhhhhchH---HHHHHHHHHHHHHHHHHH
Q 003536 330 NLQGLLAKATKQADQAISVLQQNQ----ELRKKVD-------KLEESLDEANIYKLSSE---KMQQYNELMQQKMKLLEE 395 (812)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 395 (812)
.|+.+|+-+...-|+|...|.+-+ ..+.+++ ..+..+.+.....++.. ..+.|-+.|.+.|.....
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655554322 2222333 33333333333334444 445667778888888888
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 003536 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (812)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (812)
.+.....++.-.-+.|.+..++-. ++++|++-..
T Consensus 86 ~v~~~~~~ve~~r~~~~ea~~~~k-~~ekLker~~ 119 (146)
T PRK07720 86 LVMQAREQMNRKQQDLTEKNIEVK-KYEKMKEKKQ 119 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888888777777777766643 5777776543
No 496
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.63 E-value=1.7e+02 Score=28.01 Aligned_cols=45 Identities=33% Similarity=0.552 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 003536 382 YNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (812)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (812)
-.+.|...+..++++++.+..++.. +...+++..+-+..||+|.|
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~----l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEK----LKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 3466777788888888888777766 46667777777788887764
No 497
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=30.52 E-value=8.6e+02 Score=27.74 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=53.6
Q ss_pred cccchhHHHHHHHhhhh-h----HHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHh
Q 003536 129 STSQLDNLISMIRNAEK-N----ILLLNEA---RVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVE 200 (812)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (812)
.+..+-|.||-++..-- | .-++-+. ...+.+.++++|.|-.+|-.|+..+.. | -++|.++|..-.
T Consensus 56 ~s~dfsD~i~k~~r~~y~~~s~~yEm~G~G~~~kETp~qK~qRll~Ev~eL~~eve~ik~-----d--k~~a~Eek~t~~ 128 (371)
T KOG3958|consen 56 TSSDFSDRIGKKRRHGYGNNSYVYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKT-----D--KESATEEKLTPV 128 (371)
T ss_pred CcccchHHHHhhhhhccCCCcceeeeeccCcCcccCHHHHHHHHHHHHHHHHHHHHHHhh-----c--hhhhhhhhcchH
Confidence 34556677776653211 1 1112221 346777888888888888777665543 3 457889999999
Q ss_pred hhHHHHHHHHHHhhh
Q 003536 201 LLEDQLQKLQHELTH 215 (812)
Q Consensus 201 ~~~~~~~~~~~~~~~ 215 (812)
++-.+|+.|+++|-.
T Consensus 129 l~A~vla~lkk~l~a 143 (371)
T KOG3958|consen 129 LLAKVLAALKKQLVA 143 (371)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
No 498
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=30.18 E-value=65 Score=33.59 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 003536 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (812)
Q Consensus 527 vGGLGdVV~~LsKALqklGheV~VItPkY~ 556 (812)
+|| |.++..-++.|.+.|..|+|+.|...
T Consensus 15 vGg-G~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 15 VGG-GDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred ECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 355 88888999999999999999998754
No 499
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=30.15 E-value=62 Score=35.57 Aligned_cols=34 Identities=35% Similarity=0.617 Sum_probs=24.6
Q ss_pred eEEEEecccCCcccCCCHHH--HHHHHHHHHHHCCCeEEEEe
Q 003536 513 HVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVL 552 (812)
Q Consensus 513 KIL~ISsE~aP~aKvGGLGd--VV~~LsKALqklGheV~VIt 552 (812)
||+.|++| | ||.|. ++..|+-+|+++|+.|.++=
T Consensus 1 HiIvV~sg-----K-GGvGKSTva~~lA~aLa~~G~kVg~lD 36 (261)
T PF09140_consen 1 HIIVVGSG-----K-GGVGKSTVAVNLAVALARMGKKVGLLD 36 (261)
T ss_dssp EEEEEE-S-----S-TTTTHHHHHHHHHHHHHCTT--EEEEE
T ss_pred CEEEEecC-----C-CCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46667765 3 77765 88899999999999999984
No 500
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.11 E-value=1.4e+02 Score=25.75 Aligned_cols=56 Identities=32% Similarity=0.511 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhch----hhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 003536 160 DLHKILQEKEALQGEINALEMRLAET----DARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (812)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (812)
++.+.-++.+.++++|..++.+|+-- -|--.|-.+++...+-++.++++|+..|..
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888889999999998853 344445566777777778888888777653
Done!