BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003537
(812 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96SB8|SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens
GN=SMC6 PE=1 SV=2
Length = 1091
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 217/785 (27%), Positives = 398/785 (50%), Gaps = 47/785 (5%)
Query: 20 GTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
G I + L+NFMCHS L + G VNF+ G NGSGKSA+LTAL + G RA T R ++
Sbjct: 46 GIIESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSS 105
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137
LK F+K G + A + + L+NRG+DAFK ++G+SI+I++ I+ + + + LK G V+
Sbjct: 106 LKGFVKDGQNSADISITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSATGSVVS 165
Query: 138 SRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQS 197
+RK+EL+ ++DHFNI V+NP +++Q+ S++FL S N+ DK+KFF KAT L+Q+ +
Sbjct: 166 TRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSY 225
Query: 198 IYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYD 257
I + + + E + +++ E + + +++ + + +L+ LK ++AW+ V +
Sbjct: 226 IMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAWAVVNE 285
Query: 258 VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR-- 315
+++QL I+ +DR R K++ + L +K +I +EK SE
Sbjct: 286 IEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAE----QKYKDIQDKLEKISEETNA 341
Query: 316 RRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLE-------QQVHDIQEQHV 368
R + + + K++ E E++ N S +N K L+ +++ ++++
Sbjct: 342 RAPECMALKADVVAKKRAYNEAEVLYNRS-----LNEYKALKKDDEQLCKRIEELKKSTD 396
Query: 369 RNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYD 428
++ + E E + K+ L+ + A + + +E + + K+K E +I E D
Sbjct: 397 QSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDVK 456
Query: 429 KKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIE---RHHHKFKSPPIGPIGSHVTL 485
+ +++EL+ +T+++ FG + V +LL AI+ R H F P+GP+G+ + L
Sbjct: 457 HALSYNQRQLKELKDSKTDRLKRFGPN-VPALLEAIDDAYRQGH-FTYKPVGPLGACIHL 514
Query: 486 VNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCARE---ANYNHLQIIIYDFSRPRLS 542
+ + A A+E + LL A+ +H D +L+ + + II+ +F
Sbjct: 515 RDPE-LALAIESCLKGLLQAYCCHNHADERVLQALMKRFYLPGTSRPPIIVSEFRNEIYD 573
Query: 543 LPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRIS-NL 601
+ H H PT L+ L+ DN V N L+DM E +L+++ V +AV Q+ N
Sbjct: 574 VRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVMQSQKPPKNC 633
Query: 602 KEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAA-------LHVQEE 654
+E +T DG ++F+ G + + R L D +I DLE L++Q+
Sbjct: 634 REAFTADGDQVFA-GRYYS----SENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQH 688
Query: 655 AQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSAS 714
K + +EE L+ Q H + +K + R +S+ ++++ + D
Sbjct: 689 LSALEKDIKHNEELLKRCQLHYKELKMKI----RKNISEIRELENIEEHQSVDIATLEDE 744
Query: 715 AVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEA 774
A + S+ + ++E +++++ +E L+ EAE K + +K L E A D
Sbjct: 745 AQENKSK-MKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNL 803
Query: 775 AEKEL 779
A+ E+
Sbjct: 804 ADSEV 808
>sp|Q6P9I7|SMC6_XENLA Structural maintenance of chromosomes protein 6 OS=Xenopus laevis
GN=smc6 PE=2 SV=1
Length = 1128
Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 180/627 (28%), Positives = 337/627 (53%), Gaps = 37/627 (5%)
Query: 7 SSESGYGPQRSGAGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIA 65
+S+SG G G I + L NFMCHS L G VNF+ G NGSGKSA+LTAL +
Sbjct: 76 ASQSGTG----DVGIIESIFLRNFMCHSMLGPFRFGPNVNFVIGNNGSGKSAVLTALIVG 131
Query: 66 FGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTST 125
G +A T R +++K F+K G ++A + + L+NRG+DA+KP++FG+SI +++R+T S
Sbjct: 132 LGGKAAITNRGSSIKGFVKEGQTFAEISITLRNRGQDAYKPDVFGNSITVQQRLTTDGSR 191
Query: 126 TV-LKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFK 184
T LK G V+++K+EL ++DHFNI V+NP +++Q+ S+ FL S N+ DK+KFF K
Sbjct: 192 TYKLKSATGAVVSNKKEELTAILDHFNIQVDNPVSVLTQEMSKHFLQSKNESDKYKFFMK 251
Query: 185 ATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQ 244
AT L+Q+ + I ++ V ++ +E + + + +++ + E+ + L+
Sbjct: 252 ATQLEQMKEDYSYIMETKSRTHDQVENGGERLRDLRQECIQKEERFKSIASLGEMKEKLE 311
Query: 245 RLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEI 304
LK K+AW+ V + ++Q+K +I + R + + KI+ + + + F K+ E+
Sbjct: 312 DLKNKMAWALVTESEKQIKPFIEQISTEEGRTVKYEQKIEECQGKVINAEEKFRAKQEEL 371
Query: 305 AVMVEKT-----------SEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRV 353
+ ++ +V++++ +S L + ++EL+ L R+ + K R+
Sbjct: 372 DKITQEAVALKPQGIGLKEDVQKKRKSYNESEVLYNRHRMELK-RLERDAEQLHK---RI 427
Query: 354 KGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKE 413
+ L++ + E Q E ++I ++K L + N + + ++ E+ ++
Sbjct: 428 EELKKSADNDSESEKMARQKEINQIRERMKALHDKDITTNQQIHQFQQAIEKYKEERARI 487
Query: 414 KNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHH--KF 471
NE R I +E + + +++EL + +T+++ FG + + +LL AI+ +F
Sbjct: 488 GNEERNIKQRLEQH-------KRQLKELHESKTDRLKRFGQN-MPALLAAIDEADKLGRF 539
Query: 472 KSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGC-ARE-ANYNHL 529
+ P+GP+G+ + L + + A AVE + L+ AF +H+D +L+ +RE
Sbjct: 540 RKKPVGPLGACIHLKDQE-LALAVESCLKGLMFAFCCDNHQDERMLQNIMSREYPRGRRP 598
Query: 530 QIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVG 589
QII+ +F + H HPT L+ L+ D+P V N L+DM E ++++ D
Sbjct: 599 QIIVNEFIDHVYDVRQRATFHPDHPTVLTALEIDHPVVTNCLIDMRGIETILIIKGKDEA 658
Query: 590 KAVAFEQRIS--NLKEVYTLDGHKMFS 614
+ + ++R N +E +T +G ++++
Sbjct: 659 REI-MQKRAPPRNCREAFTGEGDQVYT 684
>sp|Q924W5|SMC6_MOUSE Structural maintenance of chromosomes protein 6 OS=Mus musculus
GN=Smc6 PE=2 SV=1
Length = 1097
Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 209/780 (26%), Positives = 399/780 (51%), Gaps = 35/780 (4%)
Query: 19 AGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA 77
G I ++L NFMCHS L + G VNF+ G NGSGKSA+LTAL + G +A T R +
Sbjct: 51 VGIIESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGS 110
Query: 78 TLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136
+LK F+K G + A + + L+NRG+DAF+ ++GDSI++++ I+ + + + LK +G V
Sbjct: 111 SLKGFVKAGQNSADISITLRNRGDDAFRANVYGDSIVVQQHISVDGSRSYKLKSEKGTVV 170
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQ 196
++RK+EL+ ++DHFNI V+NP +++Q+ S++FL S N+ DK+KFF KAT L+Q+ +
Sbjct: 171 STRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYS 230
Query: 197 SIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 256
I + + + E + +++ E + + +N+ + + +L+ LK ++AW+ V
Sbjct: 231 YIMETKERTKEQINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYLKHEMAWAVVN 290
Query: 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR- 315
++++QL I+ ++R + K++ + L KK +I +EK SE
Sbjct: 291 EIEKQLNAIRDNIKIGEERAAKLDRKMEEQQVRLNDAE----KKYKDIQDKLEKISEETN 346
Query: 316 -RRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG--LEQQVHDIQEQHVRNTQ 372
R + + + + + + E++ N S + + G L +++ ++++ ++ +
Sbjct: 347 ARAPECMALKTDVIARTRAFNDAEVLYNRSLNEYKALKKDGEQLCKRIEELKKSTDQSLE 406
Query: 373 AEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCR 432
E E + ++ L+ ++ A + +E + + K+K E R+ E +
Sbjct: 407 PERLERQKRICWLKEKVKALQDQEHTVNQEAEQFEQAIEKDKQEHGRVRKEDIEVRHALN 466
Query: 433 EIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHK--FKSPPIGPIGSHVTLVNGDT 490
+ +++EL+ +T+++ FG V +LL AI+ + + F PIGP+G+ + L + +
Sbjct: 467 YNQRQLKELKDSKTDRLKRFGP-HVPALLEAIDDAYRRRQFTHKPIGPLGACIHLRDPE- 524
Query: 491 WAPAVEQAIGRLLNAFIVTDHKDALLLRGCARE---ANYNHLQIIIYDFSRPRLSLPHHM 547
A A+E + LL A+ +H D +L+ ++ + QII+ +F +
Sbjct: 525 LALAIESCLKGLLQAYCCHNHADERVLQSLMKKFYPPGTSRPQIIVSEFRDEVYDVRLRA 584
Query: 548 LPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRIS-NLKEVYT 606
H + PT L+ L+ DN V N L+DM S E +L+++ V +AV Q+ N +E +T
Sbjct: 585 AYHPEFPTVLTALEIDNAVVANSLIDMRSIETVLLIKNNSVARAVMQSQKPPKNCREAFT 644
Query: 607 LDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERA-------ALHVQEEAQQCR 659
DG ++F+ G + + R L D +I DLE + +Q+
Sbjct: 645 ADGDQVFA-GRYYS----SESTRPKFLSRDVDSEISDLETEIENKKGHIITLQQRLSALE 699
Query: 660 KRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEI 719
K + +EE L+ Q H + +K + R +S+ ++++ + D A +E
Sbjct: 700 KDIKRNEELLKRCQLHYKEIKMKI----RKNISEIRELENIEEHQSVDIATLEDEA-EEN 754
Query: 720 SQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKEL 779
++ +++ +++++ +E L+ EAE K + +KL L E A D A+ E+
Sbjct: 755 KIKMQMVEKNMEQQKENMENLKSLKIEAENKYDTIKLKINQLSELADPLKDELNLADSEV 814
>sp|Q802R8|SMC6_TAKRU Structural maintenance of chromosomes protein 6 OS=Takifugu
rubripes GN=smc6 PE=2 SV=1
Length = 1090
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 206/779 (26%), Positives = 393/779 (50%), Gaps = 74/779 (9%)
Query: 17 SGAGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR 75
S G + + L NFMCH++L G VNFI G+NGSGKSAILT L +A G A+ T R
Sbjct: 50 SDVGIVKSITLNNFMCHANLGPFAFGSNVNFIVGKNGSGKSAILTGLIVALGGNAQATNR 109
Query: 76 AATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGK 134
++LK F+K G S+A+V + L N G+DA+KPE++G +I+I+++IT E T LK G
Sbjct: 110 GSSLKGFVKEGESFAVVSITLNNIGKDAYKPEVYGQAIVIDQKITREGIRTYKLKSQSGH 169
Query: 135 RVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDL 194
++++K++L+ ++D++NI V NP I++Q+ S+ FLHS +K+KFF KAT L+Q+ D
Sbjct: 170 IISTKKEDLVTILDYYNIQVNNPVTILTQEMSKYFLHSKGGAEKYKFFMKATQLEQMKDD 229
Query: 195 LQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSW 254
I + + V + +K +++ E + + +++ V E+ L+ LKK++AW+
Sbjct: 230 FVHIKSTKSVTVDKVEQHSECLKDLKRDYLEKEDRYKSLASVNEMYTKLEELKKQMAWAL 289
Query: 255 VYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEV 314
V +V+++ + K+E + + K+D KKK E+A +K S
Sbjct: 290 VGEVEKEFEPMKEKLESDRCATNKFNEKVDE------------WKKKVEVAEGKQKQS-- 335
Query: 315 RRRKDELQQSISLATKEKLELEGELVRNTSYMQK---MVNRVKGL--------EQQVHDI 363
+ +E+ Q +S + E + E+ R + ++ V+R K + Q I
Sbjct: 336 HEQLEEITQQVSELQSKCTEFKTEVQRRNADLKSCEVTVHRHKAILRDLEKDKAQLSSKI 395
Query: 364 QEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIR----- 418
+ + +QA +E +A+++ + +I+AA L + S L +++ + ++ R
Sbjct: 396 NDLSLSISQATGAESQARMERI-AQIEAA---LEDLTHHTSTLGQQIEQYQHSYRHAIEG 451
Query: 419 --RISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHK--FKSP 474
++ E+E K R +++ ++ ++N++ F GD++ +LL AI+ H K FK
Sbjct: 452 QGKMKRELEGLQKSIDANRRQLQSMESSRSNRLQRF-GDQMPALLAAIDEAHKKGQFKHR 510
Query: 475 PIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREA-NYNHLQIII 533
P GP+G ++L + + A ++E + L+ AF ++ D +L+ + + II
Sbjct: 511 PRGPLGYLISLKDPE-LALSIEICLKNLVQAFTCDNYDDERVLKSLMTKVLQHGRRPAII 569
Query: 534 YDFSRPRL-SLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRD-YDVGKA 591
P++ + + H +P+ L L+ ++P V N L+D + E +L+++ + +
Sbjct: 570 TSRFFPKVHDVSVRAVNHPDYPSVLQALEIEDPVVANCLIDQRAIECILLIKNRTEARRV 629
Query: 592 VAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLER----- 646
+ N ++++G ++F+ S + R L +E I+ L+R
Sbjct: 630 MQGRNPPQNCTSAFSVEGDQIFTNRSYTA-----DQTRANFLSKDVEEGIRHLKREMETQ 684
Query: 647 --AALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704
A H+Q++ + K ++++ L+ Q Q+ + E M +L D+KN
Sbjct: 685 KVQAAHIQQQIRSTDKNISENQDLLRRTQTEQK-------TTEVKTMKLQLELTDLKN-- 735
Query: 705 AADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLS--FQSL 761
P + + E+ N ++E ++ + +++ + EA+ K + KL+ F SL
Sbjct: 736 ---VEEPQSEDLAELKSAFENAEQEYKQHKQLIDT---AAEEADVKKVETKLTPLFTSL 788
>sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes protein 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc6 PE=1 SV=1
Length = 1140
Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 193/673 (28%), Positives = 335/673 (49%), Gaps = 118/673 (17%)
Query: 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
G I + L NFMCH SL+I G +NF+ G NGSGKSAILT L I G +A T RA
Sbjct: 94 VGVIECIHLVNFMCHDSLKINFGPRINFVIGHNGSGKSAILTGLTICLGAKASNTNRAPN 153
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRI-TESTSTTVLKDHQGKRVA 137
+K +K G +YA + V + NRG +A++PEI+G SI IER I E +S L+ G ++
Sbjct: 154 MKSLVKQGKNYARISVTISNRGFEAYQPEIYGKSITIERTIRREGSSEYRLRSFNGTVIS 213
Query: 138 SRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVND---- 193
+++ EL + DH + ++NP I++QD +R+FL + + K+K++ F K L+Q+ +
Sbjct: 214 TKRDELDNICDHMGLQIDNPMNILTQDTARQFLGNSSPKEKYQLFMKGIQLKQLEENYSL 273
Query: 194 LLQSIYNHLNKGDALVLELEAT----IKPTEKELSELQRKIRNMEHVEEITQDLQRLKKK 249
+ QS+ N N VL + T + E+E L + R E++ + L++ K +
Sbjct: 274 IEQSLINTKN-----VLGNKKTGVSYLAKKEEEYKLLWEQSRETENLHNL---LEQKKGE 325
Query: 250 LAWSWVYDVDRQL----------------KEQTL------------KIEKLKDRIPRCQA 281
+ W+ V +V+++L ++ L KI ++ I R +
Sbjct: 326 MVWAQVVEVEKELLLAEKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKEEVIGRAKG 385
Query: 282 KIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT------KEKLEL 335
+ D+ S E + F ++E+ ++V +K ++Q SI+ A +E+L
Sbjct: 386 ETDTTKSKFEDIVKTFDGYRSEM-------NDVDIQKRDIQNSINAAKSCLDVYREQLNT 438
Query: 336 EGELVRN--TSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAAN 393
E N S ++K N L++++ D+ EQ V E+E+K +L
Sbjct: 439 ERARENNLGGSQIEKRANESNNLQREIADLSEQIV--------ELESKRNDLH------- 483
Query: 394 ITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFG 453
S + E L+ L+K+ + +ISD+ E ++ L+ Q +KV+AFG
Sbjct: 484 ---SALLEMGGNLTSLLTKKDSIANKISDQSE-----------HLKVLEDVQRDKVSAFG 529
Query: 454 GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKD 513
+ + LL+ I R +F+ PP GP+G ++T V W +E+ +G ++N FIV H D
Sbjct: 530 KN-MPQLLKLITR-ETRFQHPPKGPMGKYMT-VKEQKWHLIIERILGNVINGFIVRSHHD 586
Query: 514 ALLLRGCAREANYNHLQIII-----YDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVI 568
L+L+ R++N H +++ +D+S P +++PT L +++ D+ V+
Sbjct: 587 QLILKELMRQSNC-HATVVVGKYDPFDYSSGE--------PDSQYPTVLKIIKFDDDEVL 637
Query: 569 NVLVDMGSAERQVLVRDYDVGKAVAFEQR-ISNLKEVYTLD------GHKMFS---RGSV 618
+ L++ E+ +L+ D +A A+ +R I+N+ + Y LD G ++ S +
Sbjct: 638 HTLINHLGIEKMLLIEDRR--EAEAYMKRGIANVTQCYALDPRNRGYGFRIVSTQRSSGI 695
Query: 619 QTILPLNRRLRTG 631
+ P NR R G
Sbjct: 696 SKVTPWNRPPRIG 708
>sp|Q12749|SMC6_YEAST Structural maintenance of chromosomes protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC6 PE=1
SV=1
Length = 1114
Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 328/643 (51%), Gaps = 99/643 (15%)
Query: 4 YRFSSESGYGPQ-----RSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAI 58
+R SS+ Q S +G I +V L NFMCH ++ELG +NFI G NGSGKSAI
Sbjct: 59 FRSSSDVATADQDNFLEESPSGYIKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAI 118
Query: 59 LTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERR 118
LTA+ I G +A T R ++LKD I+ GC A + + L N A++ IFG+ II+ER
Sbjct: 119 LTAITIGLGAKASETNRGSSLKDLIREGCYSAKIILHLDNSKYGAYQQGIFGNEIIVERI 178
Query: 119 IT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKD 177
I + ++ L+ GK ++++K+++ ++D+F++ V NP +SQD +R FL + +D
Sbjct: 179 IKRDGPASFSLRSENGKEISNKKKDIQTVVDYFSVPVSNPMCFLSQDAARSFLTASTSQD 238
Query: 178 KFKFFFKATLLQQVN-DLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHV 236
K+ F K TLLQ++ +LL + H + + + L LE +K + E + ++ +R +
Sbjct: 239 KYSHFMKGTLLQEITENLLYASAIHDSAQENMALHLE-NLKSLKAEYEDAKKLLRELNQT 297
Query: 237 EEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDC 296
++ + L+ K W +D + T + L++ I Q K+D
Sbjct: 298 SDLNERKMLLQAKSLW-----ID--VAHNTDACKNLENEISGIQQKVD------------ 338
Query: 297 FMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGL 356
E T ++R R++++++ S T + +++ +++ Y+ + + +
Sbjct: 339 ------------EVTEKIRNRQEKIERYTSDGTTIEAQIDAKVI----YVNEKDSEHQNA 382
Query: 357 EQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNE 416
+ + D++ + + ++ ++E ++ + + + ++DA N T++ ++EE L++++ +K++
Sbjct: 383 RELLRDVKSRFEKE-KSNQAEAQSNIDQGRKKVDALNKTIAHLEEE---LTKEMGGDKDQ 438
Query: 417 IRRISDEIEDYDKKCREIR----------------------SEIRELQQHQTNKVT---- 450
+R+ +++E ++K RE+ SE+R + + NK
Sbjct: 439 MRQELEQLEKANEKLREVNNSLVVSLQDVKNEERDIQHERESELRTISRSIQNKKVELQN 498
Query: 451 -AFGGDRVI--------SLLRAIERHHHKFKSPPIGPIGSHVTLVNG-DTWAPAVEQAIG 500
A G D + LLR IE+ ++F++P IGP+GS VT+ G + W ++++AI
Sbjct: 499 IAKGNDTFLMNFDRNMDRLLRTIEQRKNEFETPAIGPLGSLVTIRKGFEKWTRSIQRAIS 558
Query: 501 RLLNAFIVTDHKDALLLRGCAREANY-NHLQIIIY-----DFSRPRLSLPHHMLPHTKHP 554
LNAF+V++ KD L R R +++ I+ Y D+S+ R H +P
Sbjct: 559 SSLNAFVVSNPKDNRLFRDIMRSCGIRSNIPIVTYCLSQFDYSKGR--------AHGNYP 610
Query: 555 TTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQR 597
T + L+ P + + VD+ ER VL+ D + +A F QR
Sbjct: 611 TIVDALEFSKPEIECLFVDLSRIERIVLIEDKN--EARNFLQR 651
>sp|Q54I56|SMC6_DICDI Structural maintenance of chromosomes protein 6 OS=Dictyostelium
discoideum GN=smc6 PE=3 SV=1
Length = 1185
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 164/581 (28%), Positives = 310/581 (53%), Gaps = 33/581 (5%)
Query: 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
AG I + LENFMCH +++ VNFI G+NGSGKSA+L AL + G +A T R +
Sbjct: 146 AGIIESITLENFMCHRHFKLDFCSNVNFIAGENGSGKSAVLIALIVCLGAKAGFTNRGSK 205
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTV-LKDHQGKRVA 137
L D +K + A++ V+L+N+G++AFKPE +G S+IIERRI+ + S+ +KD+ GK V+
Sbjct: 206 LSDLVKAETNTAVITVKLRNQGQEAFKPEKYGKSVIIERRISRTGSSGYKVKDYNGKTVS 265
Query: 138 SRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQS 197
+ ++ +++ FNI ++NP I++QD SR+FL+S +DK+K F AT L ++ +
Sbjct: 266 DKFNDVSLILEQFNIQIDNPMSILTQDTSRQFLNSAGPQDKYKSFLMATQLDKMTKDYTT 325
Query: 198 IYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYD 257
I H++K ++ + I+ EK++ E ++ ++++ + + + + K +LAWS+V +
Sbjct: 326 IREHIDKIKDMLSQKVVVIQELEKKVREYNKEYKDLQQMVGLERKISEFKNQLAWSFVVE 385
Query: 258 VDRQLKEQTLKIEKLKDR-----IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTS 312
+R+ K + ++ + ++R I + I++ + +E + K +I ++
Sbjct: 386 SEREAKRKEKQVAEAEERSFDNDIRKVDETIETYNKSIEDI-------KKDIKEFTDQIK 438
Query: 313 EVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVR--N 370
++K+ + I +E+ +++ ++ N Q+ R Q +++I+E++ + N
Sbjct: 439 IQEQKKETNNREILTIEREEAKIQTQIEANNKKRQQRKQRRHLQLQSINEIKERNAQLAN 498
Query: 371 TQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK 430
Q++ EI+ K ++ + +++A L + KE+ E L ++ R I+ ++ +++
Sbjct: 499 NQSKLDEIKKKGQQ-KLQLEARKEELIKEKEDLMRDRENLKRDHQNQRTITQQM---NRE 554
Query: 431 CREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDT 490
+R ++ L+ Q + A+G + L IE F PIGPIG + + N ++
Sbjct: 555 YEGLRVQLNNLRSTQKGENQAYGKG-MTDFLHKIEASRRNFSKLPIGPIGLSLKIKN-ES 612
Query: 491 WAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSR-PRLSLPHHML 548
WA A+E AI + L F+V D + L+ H I D+++ P + + +
Sbjct: 613 WAFAIESAISKATLRNFLVFSIPDGITLQKLG------HQFGIKVDYTKIPETTEVYKTV 666
Query: 549 PHTK-HP---TTLSVLQSDNPTVINVLVDMGSAERQVLVRD 585
H + P T L VL S + +IN L+D E+ L D
Sbjct: 667 EHDELDPSLATVLRVLDSPSHFIINFLIDTKKVEQIGLGND 707
>sp|O13710|SMC5_SCHPO Structural maintenance of chromosomes protein 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc5 PE=1 SV=3
Length = 1076
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I R++L NF+ + ++ G ++N I G NG+GKS I++A+CI G K RA
Sbjct: 22 GSIVRIKLVNFVTYDYCELFPGPYLNLIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKEA 81
Query: 80 KDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASR 139
++FIK G + A +E+E+K R + +++ I R+I++ S++ R A
Sbjct: 82 REFIKYGKNTATIEIEMKYRDD---------ETVTITRQISQDKSSSF----SINREACA 128
Query: 140 KQELLELIDHFNIDVENPCVIMSQDKSREF 169
+ L+D FN+ + N C + QD+ EF
Sbjct: 129 TSSITSLMDTFNVQLNNLCHFLPQDRVAEF 158
>sp|Q5ZJY5|SMC5_CHICK Structural maintenance of chromosomes protein 5 OS=Gallus gallus
GN=SMC5 PE=2 SV=1
Length = 1065
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 13 GPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72
G RS G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 23 GKPRSVEGSIVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSF 82
Query: 73 TQRAATLKDFIKTGCSYAMVEVELKNRGEDAFK-PEIFGDSIIIERRITESTSTTVLKDH 131
RA + F+K GC +VE+EL FK PE +III R I T+T+ H
Sbjct: 83 LGRAEKVGLFVKQGCLKGLVEIEL-------FKVPE----NIIITREIQVVTNTSTW--H 129
Query: 132 QGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
+++ + K + E + NI V+N C + QDK EF
Sbjct: 130 INRKLTTLKT-VEEQVAALNIQVDNLCQFLPQDKVGEF 166
>sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens
GN=SMC5 PE=1 SV=2
Length = 1101
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 22/161 (13%)
Query: 15 QRSGA---GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK 71
Q SG G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 43 QSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPA 102
Query: 72 GTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTT---VL 128
RA + F+K GCS MVE+EL F+ +++I R I + + + +
Sbjct: 103 FMGRADKVGFFVKRGCSRGMVEIEL-------FRA---SGNLVITREIDVAKNQSFWFIN 152
Query: 129 KDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
K +++ K + NI V N C + QDK EF
Sbjct: 153 KKSTTQKIVEEK------VAALNIQVGNLCQFLPQDKVGEF 187
>sp|Q8CG46|SMC5_MOUSE Structural maintenance of chromosomes protein 5 OS=Mus musculus
GN=Smc5 PE=2 SV=1
Length = 1101
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 24/163 (14%)
Query: 14 PQRSGA---GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70
P+ SG G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 42 PRPSGTFVEGSIVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKP 101
Query: 71 KGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKD 130
RA + F+K GCS +VE+EL F+ ++II R I V+K+
Sbjct: 102 AFMGRADKVGFFVKRGCSKGLVEIEL-------FRT---SGNLIITREI------DVIKN 145
Query: 131 HQ----GKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
K+ ++K + E + NI V N C + QDK EF
Sbjct: 146 QSFWFINKKPVTQKI-VEEQVAALNIQVGNLCQFLPQDKVGEF 187
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosomes protein 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC5 PE=1
SV=1
Length = 1093
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I ++RL++F+ ++ + L +N I G NGSGKS + A+C+ + + R+ +
Sbjct: 40 GSIIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKV 99
Query: 80 KDFIKTGCSYAMVEVELKNRGE--DAFKPEIFGDSIIIERRITEST--STTVLKDHQGKR 135
+DFIK G + +E+ LKN D + ++I I R IT S S ++ D+Q
Sbjct: 100 EDFIKNGQDVSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVSE 159
Query: 136 VASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
+ L+ NI ++N C +SQ++ EF
Sbjct: 160 SVVKT-----LVAQLNIQLDNLCQFLSQERVEEF 188
>sp|Q805A1|SMC5_XENLA Structural maintenance of chromosomes protein 5 OS=Xenopus laevis
GN=smc5 PE=2 SV=1
Length = 1065
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I R+++ENF+ + ++ G ++N I G NG+GKS+I+ A+C+ + RA +
Sbjct: 29 GSIVRIKMENFLTYDQCEVFPGPYLNMIVGANGTGKSSIVCAICLGLAGKTAFIGRADKV 88
Query: 80 KDFIKTGCSYAMVEVEL-KNRGEDAFKPEIFGDSIIIERRITESTSTTVLK-DHQGKRVA 137
++K GC VE+EL K G ++II+R I + + +V +H+ +
Sbjct: 89 GFYVKRGCQKGFVELELYKTSG-----------NVIIKREIQVANNQSVWYINHKSATLK 137
Query: 138 SRKQELLELIDHFNIDVENPCVI 160
+ + E + NI V N C I
Sbjct: 138 T----VEEQVPALNIQVGNLCPI 156
>sp|O58687|RAD50_PYRHO DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=rad50 PE=3 SV=1
Length = 879
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 172/377 (45%), Gaps = 55/377 (14%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I RV ++NF H + +IE +N I GQNG+GKS++L A+ + + R +
Sbjct: 3 IERVIVQNFRSHKNSEIEFKPGINLIIGQNGAGKSSLLDAILVGLYWSKRMRLRGLKKDE 62
Query: 82 FIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQ 141
F +TG A++E+ + ED K ++ D + + + LK G+ +
Sbjct: 63 FTRTGTRGAIIEITFE---EDGTKYKVLRDF---------ARNVSYLKRLDGREWRHVTE 110
Query: 142 ELLELIDHFNIDVENP------CVIMSQDKSREFLHSGNDKDKF-KFFFKATLLQQVNDL 194
+E + F ID P + + Q + L S +DK K L++ D
Sbjct: 111 TSMESVSSF-IDRIIPYNVFLNAIYVRQGQIDAILESDETRDKIVKEILNLDKLEKAYDN 169
Query: 195 LQSIYNHLN----KGDALVLE---LEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLK 247
L I ++ + + +++ +E I+ EK +E+ +IRN I+ +L RL+
Sbjct: 170 LGKIRKYIKYSIEEKEKFIMKTENIEDLIRTQEKSFTEVLNEIRN------ISSNLPRLR 223
Query: 248 KKL------------AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRD 295
++L ++ + ++ +L E K +L++RI + ++ I+ + + L +
Sbjct: 224 RELEGIKEEVKTLEATFNSITELKLRLGELNGKKGRLEERIRQLESGIEEKRKKSKELEE 283
Query: 296 C------FMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKM 349
KK+ E ++E E +K+EL++ + + + +L+ E+ R +
Sbjct: 284 VVKELPELEKKETEYRRLIEFKDEYLVKKNELEKRLGILSN-RLQ---EVKRKIKDAESK 339
Query: 350 VNRVKGLEQQVHDIQEQ 366
V R++ +E+++ +IQE+
Sbjct: 340 VARIRWIEERLKEIQEK 356
>sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5 OS=Takifugu
rubripes GN=smc5 PE=2 SV=1
Length = 1092
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 10 SGYGPQRSGA-------GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTAL 62
SG+ P GA G+I R+ + NF+ + ++ G +N I G NG+GKS+I+ A+
Sbjct: 27 SGHRP--CGAEVEGRMDGSILRITMRNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAI 84
Query: 63 CIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITES 122
C+ + R + ++K GC +E+EL +K G +++I R I
Sbjct: 85 CLGLAGKTAVLGRGDKVGLYVKRGCQKGSIEIEL-------YK---HGGNLVITREIHVE 134
Query: 123 TSTTVLKDHQGKRVASRKQELL-ELIDHFNIDVENPCVIMSQDKSREF 169
+ + H R Q+ + E + + I V N C + Q+K EF
Sbjct: 135 NNQS----HWMINGKQRNQKAVEEEVKNLCIQVSNLCQFLPQEKVGEF 178
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rad50 PE=3 SV=2
Length = 879
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+ +ENF+ H IE VN I G NG+GKS+I+ A I+F K + A +D
Sbjct: 3 IRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDA--ISFSLFRKSLRDAKKQED 60
Query: 82 FIKTGCSYAMVEVELKNRG 100
IK G A V + L+N+G
Sbjct: 61 LIKRGAGRATVTLYLENKG 79
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 94/436 (21%), Positives = 197/436 (45%), Gaps = 47/436 (10%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKNRG 100
N ITG NGSGKS IL A+C G T RA L+D I + G + A V + NR
Sbjct: 28 NAITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQAGITRASVTIVFNNR- 86
Query: 101 EDAFKPEIFGD--SIIIERR-ITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP 157
+ A P F + + + R+ I TS ++ H+ + +Q + L +++ NP
Sbjct: 87 DPASSPIGFENHPQVSVTRQIIMGGTSKYLINGHR-----ALQQNVQNLFQSVQLNINNP 141
Query: 158 CVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217
++ Q + + L+ + +A+ + + + + + + +A V E+ ++
Sbjct: 142 NFLIMQGRITKVLNM-KATEILSMIEEASGTRMFEERKEKAFRTMQRKEAKVEEINTLLR 200
Query: 218 -PTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRI 276
E L++L+ + + + I DL+RL L ++ Y + +LK+E+L
Sbjct: 201 EEIEPRLTKLRTEKKTFLEYQHIYNDLERL-SHLCTAYDY------YKLSLKVEELT--- 250
Query: 277 PRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELE 336
QA +HS + + K E+ ++ EK +++ +DE + +S+++ L+ +
Sbjct: 251 --VQA--SQKHSHIAEMESSLQTSKQEVLILKEK---IKKIEDERMRQMSVSSDRTLDSQ 303
Query: 337 GELVR-NTSYMQKMVN-RVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANI 394
+ V N + + + + LE++ D+Q+ + + E+E L+ + +D
Sbjct: 304 LQTVNENITRISTSIELKNTALEEEHGDLQQ-----IRGKAKELETLLRGKRKRLDEVLS 358
Query: 395 TLSRMKEEDSALSEKLSKEKNEIRRISDEIE-------DYDKKCREIRSEIRELQ-QHQT 446
+ K+E ++S+ ++ I ++ + Y +K E R + + + + +T
Sbjct: 359 VYEKRKDEHQSISKDFKSQEELISSLTTGLSTTEGHETGYSRKLHEARDTLNDFKAEKET 418
Query: 447 NKVTAFGGDRVISLLR 462
N++ G ++ ISL +
Sbjct: 419 NRLKLEGLNKQISLTK 434
>sp|O33600|RAD50_SULAC DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=rad50 PE=3 SV=1
Length = 886
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I +RL+NF+ H ++ +N I G NG+GKS+I+ I FG + + ++
Sbjct: 3 IREIRLQNFLSHEDTTVKFEGSINVIIGNNGAGKSSIIDG--ILFGLFKRTNRDIGKNEE 60
Query: 82 FIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQ 141
IK G K G+ + K EI GD+ +I+R + E++ T+ +GK + +Q
Sbjct: 61 LIKKG----------KKSGQVSIKFEINGDTYLIDRNVGETSRDTISLLKEGKIITLARQ 110
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 27 LENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI 83
++ F +++ + + +W N ITG NGSGKS IL A+C G + T RA++L+D I
Sbjct: 8 IDGFKSYATRTV-ITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRASSLQDLI 66
Query: 84 ----KTGCSYAMVEVELKNRGEDAFKPEIFGDS--IIIERRIT-ESTSTTVLKDHQGKRV 136
+ G + A V + N + + P F +S I + R++ TS ++ H+ +
Sbjct: 67 YKRGQAGVTKASVTIVFDN-TDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGHRAPQ- 124
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171
Q +L+L +++ NP ++ Q K + L+
Sbjct: 125 ----QSVLQLFQSVQLNINNPNFLIMQGKITKVLN 155
>sp|P58302|RAD50_THEVO DNA double-strand break repair Rad50 ATPase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=rad50 PE=3 SV=1
Length = 895
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+RL NF+ HS I +N I GQNG+GKS+I+ A+ A +R +D
Sbjct: 3 IERIRLRNFLSHSDSDIYFDTGINMIIGQNGAGKSSIVDAIRFALFS----DKRTRRTED 58
Query: 82 FIKTGCSYAMVEVELKNRG 100
IK G Y VE+ ++ G
Sbjct: 59 MIKKGERYMEVELYFRSEG 77
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 181/859 (21%), Positives = 364/859 (42%), Gaps = 114/859 (13%)
Query: 36 LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAM 91
+ ++ + V + G NGSGKS I A+ G ++ + R ++D I G +
Sbjct: 18 ISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFAGSDSRKRLNL 77
Query: 92 VEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFN 151
EV L +D F P F + + + RR+ S + L ++Q R L ++ID F
Sbjct: 78 AEVTLTLDNDDHFLPIDFHE-VSVTRRVYRSGESEFLINNQPCR-------LKDIIDLF- 128
Query: 152 IDV---ENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQ------QVNDLLQSIYNHL 202
+D + I+SQ K E L S + + F A +L+ + + L ++L
Sbjct: 129 MDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNL 188
Query: 203 NKGDALVLELEATIKPTEKELS---ELQRKIRNMEHVE--EITQDLQRLKKKLAWSWVYD 257
N+ + ++ ELE ++P + + S + K + +EHVE D++ L K WS + +
Sbjct: 189 NRVEDILHELEGQVEPLKIQASIAKDYLEKKKELEHVEIALTAYDIEELHGK--WSTLKE 246
Query: 258 VDRQLKEQTL-----------KIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAV 306
+ KE+ L KIE +D+I +D +L + K + V
Sbjct: 247 KVQMAKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEV 306
Query: 307 MVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQ 366
+ E+ + +++L+++I +++ L+ EL + + + + VK L QV + Q+
Sbjct: 307 LKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQA 366
Query: 367 -HVRNTQAEE----------------SEIEAKLKELQCEIDAANITLSRMK-------EE 402
+ N EE + I +L+ L ++ + +TL R+ +E
Sbjct: 367 LSLHNENVEEKIEQLKSDYFELLNSQASIRNELQLLDDQMSQSAVTLQRLADNNEKHLQE 426
Query: 403 DSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQ-QHQTNKVTAFGGDRVISLL 461
+S + + + E RI EI R+++++ + + Q++ N+ + + +
Sbjct: 427 RHDISARKAACETEFARIEQEIHSQVGAYRDMQTKYEQKKRQYEKNESALYQAYQYVQQA 486
Query: 462 RA----IERHHHKFKS------------PPIGPI-GSHVTLVNGD-TWAPAVEQAIGRLL 503
R+ +E F +G I G+ + L++ + + A+E A+G
Sbjct: 487 RSKKDMLETMQGDFSGFYQGVKEVLKAKERLGGIRGAVLELISTEQKYETAIEIALGASA 546
Query: 504 NAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSV---L 560
+ D + A ++ ++ + R R +H + L V L
Sbjct: 547 QHVVTDDEQSARKAIQYLKQNSFGRATFLPLSVIRDRQLQSRDAETAARHSSFLGVASEL 606
Query: 561 QSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSV-- 618
+ +P +V+ ++ VL+ + D+ A + + + + TL+G + GS+
Sbjct: 607 VTFDPAYRSVIQNLLGT---VLITE-DLKGANELAKLLGHRYRIVTLEGDVVNPGGSMTG 662
Query: 619 -------QTILPLNRRLR--TGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERL 669
++L +R L T RL +EK LE+ ++ Q K+ D E
Sbjct: 663 GAVKKKNNSLLGRSRELEDVTKRLA-EMEEKTALLEQEVKTLKHSIQDMEKKLADLRETG 721
Query: 670 QDLQQHQQNVKRRCFS---AERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNI 726
+ L+ QQ+VK + + AE+N ++ L D + S +++ ++ +E+S +
Sbjct: 722 EGLRLKQQDVKGQLYELQVAEKN-INTHLELYDQEKSALSESDEERKVRKRKLEEELSAV 780
Query: 727 QEEIQEKEIILEKL------QFSMNEAEA-KVEDLKLSFQSLCESAKEEVDTFEAAEKEL 779
E++++ E +++L Q S E+ + ++ +LK++ ++ K E D +KEL
Sbjct: 781 SEKMKQLEEDIDRLTKQKQTQSSTKESLSNELTELKIAAAKKEQACKGEEDNLARLKKEL 840
Query: 780 MEIEKNLQTSESVSYSFLN 798
E E L+ ++ SFL
Sbjct: 841 TETELALKEAKE-DLSFLT 858
>sp|Q9HLR8|RAD50_THEAC DNA double-strand break repair Rad50 ATPase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rad50 PE=3 SV=1
Length = 896
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+RL NF+ H +I VN I G NG+GKS+I+ A+ A G +R ++D
Sbjct: 3 IDRIRLINFLSHEDSEIFFDTGVNIIVGHNGAGKSSIIDAIRFALF----GDKRTKKIED 58
Query: 82 FIKTGCSYAMVEVELKNRG 100
I+ G VE+E ++ G
Sbjct: 59 MIRKGAKSLEVEMEFRHGG 77
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 154/676 (22%), Positives = 276/676 (40%), Gaps = 120/676 (17%)
Query: 22 ITRVRLENFMCHSSLQ-IELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
I R+ NF + I + +N I+G NGSGKS I L G ++ RA L
Sbjct: 5 IERIEAHNFKSFRRKKVINFTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRADRLS 64
Query: 81 DFIKTG----CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRV 136
D + G CS V + R +D G S++IERR+ G V
Sbjct: 65 DLVSKGSGNECS-----VSVTFRSDD-------GRSLVIERRLVIEDEPKSYYYVNG--V 110
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKA-----TLLQQV 191
SR E+ E + I+ ++ D + +SG ++ K + +++V
Sbjct: 111 RSRLSEIDETLASMGINFGTYSFVLQGDINDFISYSGQERRKLIERISGVDQFDSEIERV 170
Query: 192 NDLLQSIYNHLNKGDALVLELEATIK--PTEKELSE-----LQRKIRNMEHVEEIT-QDL 243
++++ ++ ++ E ++ TEKE E L+RK R++E+ E + ++
Sbjct: 171 KADIEAVSRNMEINQTIIDEKRQNLERLRTEKEKKERYDALLKRK-RDVEYTEILNRKNA 229
Query: 244 QRLKKKLAWSWVYDVDR---QLKEQTLKIEKLKD--RIPR--CQAKIDSRHSI-LESLRD 295
+K+ + D+ + QL+E+ +EK + RI R +ID S + ++
Sbjct: 230 MERQKRTIEGQISDLTKEIAQLEERRSDLEKRSEAIRIRREDVAKRIDDLTSGEMNRVKT 289
Query: 296 CFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG 355
+ +IA + E R ++L+++I+ E+ + E+ +++ R +
Sbjct: 290 DLHSVEVDIAKIRGIIDEKNRNMEKLEETIAKYESERDSTDREIEDLDRQIEEKAKRKRA 349
Query: 356 LEQQVHDIQEQH---VRNTQAE---ESEIEAKLKELQCEIDA--------------ANIT 395
LE + D+++++ QAE +E K KE Q +ID N
Sbjct: 350 LEDRYADLKKRYDDLFSRAQAEAVDAAETRRKSKEYQEKIDGLGREIEELKAAGSQMNAD 409
Query: 396 LSRMKEEDSALSEK-------------LSKEKNE-IRRISDEIEDYDKKCREIRSEIREL 441
L+ + ++ +AL E+ +KE +E + + S + D K +I I +L
Sbjct: 410 LAVLLQKKAALEERKEDLDLKIRTSEWKAKETSEDMGKYSRKYYDLKAKYDQINDRISDL 469
Query: 442 QQHQTNKVTA--FGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVN-GDTWAPAVEQA 498
+ + K + RV +R ++ + G IG L++ G+ + AVE A
Sbjct: 470 KSEISEKEASAKIASSRVPEYVRNVKMLEESVE----GVIGLVRDLISYGEKYVKAVESA 525
Query: 499 IGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKH---PT 555
G LNA +V KD + + C +QI+ + R P LP K P
Sbjct: 526 GGGRLNAVVV---KDDAVAKEC--------IQIL-----KDRKISPMTFLPLNKMRDPPA 569
Query: 556 TLSVLQ-SDNPTVINVLVDMGSAERQ------------VLVRDYDVGKAVAFEQRISNLK 602
V + S +P + +L+D E Q +LV+D D G+ R+ +
Sbjct: 570 QRDVGKISKDPGYLGILMDFVDFEDQYRSAVYYAIRDTILVQDIDAGR------RLMGIF 623
Query: 603 EVYTLDGHKMFSRGSV 618
+ TLDG GS+
Sbjct: 624 RLVTLDGDIFDPGGSI 639
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 16 RSGAGTITRVRLENFMCHSSLQIELGEWVNF--ITGQNGSGKSAILTALCIAFGCRAKGT 73
+S +G I ++ +ENF + Q+ +G + +F I G NGSGKS ++ A+ G R G
Sbjct: 5 QSPSGKILQLEMENFKSYKGHQL-VGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT-GQ 62
Query: 74 QRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTT 126
R + LKD I YA + + + RG AF ++ +E R T S ++
Sbjct: 63 LRGSQLKDLI-----YAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSA 110
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I RV++EN HSS +IE E +N + G NG+GK+ +L A+ +A R +
Sbjct: 2 IERVKIENLRSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRT-----FRSYDH 56
Query: 82 FIKTGCSYAMVEV 94
I+ G A+VEV
Sbjct: 57 MIREGERRAVVEV 69
>sp|O29230|RAD50_ARCFU DNA double-strand break repair Rad50 ATPase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rad50 PE=3 SV=1
Length = 886
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 25 VRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK 84
++++NF HS +IE +N I G+NG+GKS+IL A+ +AF T R D ++
Sbjct: 7 LQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAILVAFYGLKPATLRK---NDLVR 63
Query: 85 TGCSYAMVEVELKNRGED-AFKPEIFGDSIIIERRITESTST 125
S + + G+D + G+SI+ + I E S
Sbjct: 64 VNSSGYSLSLTFSLNGDDYTISRKSNGESILTGKEIVEGDSN 105
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 211 ELEATIKPTEKELSELQRKIR--NMEHVEEITQDLQRLKKKL-AWSWVYDVDRQLKEQTL 267
E+E +K E E EL RKIR E +EE+ +++Q L+ W + D + +L+ +
Sbjct: 559 EIEEALKNVESERGELHRKIREEGFESLEELEREVQSLRPFYNKWLELKDAESRLESELK 618
Query: 268 KIEKLKDRIPRCQAKIDSRHSILESLR 294
+ EKL+D I AK++ + E +R
Sbjct: 619 RREKLEDEISEAIAKLEEANGKAEEIR 645
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 22 ITRVRLENFMC---HSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
I + L+ F H+ + ++ N ITG NGSGKS IL ++C G RA +
Sbjct: 3 IKSIHLDGFKSYQKHTDI-LDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAKS 61
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFG----DSIIIERRIT-ESTSTTVLKDHQG 133
+ + I G + A+V+V N + + FG D I+++R IT ++T +
Sbjct: 62 MHELISHGGTKAIVQVRFDNTDK---RCSPFGMEHLDEIVVQRIITAQATGKGCATSYTL 118
Query: 134 KRVASRKQELLELIDHFNIDVENPCVIMSQ 163
A+ ++ + ++V NP ++ Q
Sbjct: 119 NGHAATNGKMQDFFRGVGLNVNNPHFLIMQ 148
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=rad50 PE=3 SV=1
Length = 864
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 181/433 (41%), Gaps = 95/433 (21%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
I ++ L NF+ H +I+ +N I GQNG+GKS+I+ + + F ++G
Sbjct: 3 IDKITLTNFLSHEHSEIQFMGEINVIVGQNGAGKSSIIDGIVFSLFRTHSRGNN-----D 57
Query: 81 DFIKTGCSYAMVEVELKNRGEDAFKPEIFGD-------------------SIIIERRITE 121
+ I+ G + V + L N + K EI D + ++ I +
Sbjct: 58 NLIRKGSNRGSVTLYLSNEKD---KIEIIRDIRSTTEDRLIRNQFPIARSATVVSNEIEK 114
Query: 122 --------STSTTVLKDHQGKRVASRKQEL------LELIDHFNIDVENPCVIMS---QD 164
+ ST +++ + ++ QE+ LELI+ ID P V ++
Sbjct: 115 ILGIDKDIALSTIIVRQGELDKILENFQEIMGKILKLELIEKL-IDSRGPIVEFRKNLEN 173
Query: 165 KSREFLHSGNDKDKFKFFF-------------KATLLQQVNDLLQSI------YNHLNKG 205
K RE D + FK K L ++ +L + I ++ K
Sbjct: 174 KLRELDRIEQDYNNFKKTVEEKRARVLELKKDKEKLEDEIKNLEKRIKDIKDQFDEYEKK 233
Query: 206 DALVLELEATIKPTEKELSELQRKI-------RNMEHVEEITQDLQRLKK-KLAWSWVYD 257
L+L T+K E EL+EL R I NM+ +E+ +L+ L+ KL +
Sbjct: 234 RNQYLKLTTTLKIKEGELNELNRSIEELRKQTENMDQLEKEINELENLRNIKLKFEKYEV 293
Query: 258 VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRR 317
+ + E + + L+ I + I ++K E+ K E+ R+
Sbjct: 294 LAKSHTEMSANVINLEKEIEEYEKAI---------------RRKEELEPKYLKYKELERK 338
Query: 318 KDEL----QQSISLAT--KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNT 371
+EL QQ + L + KL L+ L ++ S + +++V LEQ+V + +++ + N
Sbjct: 339 LEELQPKYQQYLKLKSDLDSKLNLKERLEKDASELSNDIDKVNSLEQKVEETRKKQL-NL 397
Query: 372 QAEESEIEAKLKE 384
+A+ +++E+ + E
Sbjct: 398 RAQLAKVESLISE 410
>sp|D4GUK1|RAD50_HALVD DNA double-strand break repair Rad50 ATPase OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=rad50 PE=1 SV=1
Length = 893
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
TR+ + NF + +++L + V I G NGSGKS++L A A +G +A A TL+
Sbjct: 3 FTRIAIRNFKPYEDAELDLRDGVTVIHGVNGSGKSSLLEACFFALYGSKAL----AGTLE 58
Query: 81 DFIKTGCSYAMVEVELKNRG 100
D + TG A + +E + G
Sbjct: 59 DVVTTGADDAEITLEFVHDG 78
>sp|P62134|RAD50_METMP DNA double-strand break repair Rad50 ATPase OS=Methanococcus
maripaludis (strain S2 / LL) GN=rad50 PE=3 SV=1
Length = 993
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
I +++ENF H + I + + I GQNGSGKS+I A+ A F R + ++
Sbjct: 3 IKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR----IE 58
Query: 81 DFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERR 118
+ ++ G + VE+E E+ G++ +++R+
Sbjct: 59 NLMQQGAASFSVELEF----------EMMGNTYLVKRK 86
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 22 ITRVRLENFMCHSSL--QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I ++ +E F + + +I LGE + G NG+GKS I A+ A G + RA L
Sbjct: 7 IEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKALRAKNL 66
Query: 80 KDFI--KTG--CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 120
I K G +A VEV KN G AF E + ++I R+++
Sbjct: 67 SYLIFSKNGQKADHAYVEVHFKNLG--AFPVE--DEEVVISRKVS 107
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 102/462 (22%), Positives = 189/462 (40%), Gaps = 59/462 (12%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKN-- 98
N ITG NGSGKS IL ++C G RA+ L+D + + G + A V + N
Sbjct: 28 NAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNSD 87
Query: 99 RGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPC 158
+ + E+ D I + R++ L + V + + +L ++V NP
Sbjct: 88 KKQSPLGFEVH-DEITVTRQVVIGGRNKYLING----VNANNTRVQDLFCSVGLNVNNPH 142
Query: 159 VIMSQDKSREFLH-------------SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKG 205
++ Q + + L+ +G ++K +++ L+ I L +
Sbjct: 143 FLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEE- 201
Query: 206 DALVLELEATIKPTEKELS---ELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQL 262
E+ TI+ ++E S E Q+ +R +EH+ + Q L LA +L
Sbjct: 202 -----EITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL---LAEDTKVRSAEEL 253
Query: 263 KEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKT-SEVRRRKDEL 321
KE K+ KL++ + KI + + +E L K+ I +E +E +R +
Sbjct: 254 KEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKS 313
Query: 322 QQSISLATK-------EKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAE 374
Q + L K ++ ELE +V ++ + VK + +H +QE ++ +A
Sbjct: 314 QSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLHALQEASNKDAEA- 372
Query: 375 ESEIEAKLKELQCEIDAANITLSRMKEEDSA---LSEKLSKEKNEIRRISDEIEDYDKKC 431
L Q +A + LS ED A L+ ++ KN+I + E + K
Sbjct: 373 -------LAAAQQHFNAVSAGLS--SNEDGAEATLAGQMMACKNDISKAQTEAKQAQMKL 423
Query: 432 REIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKS 473
+ + E++ Q + + D+ L A++R K ++
Sbjct: 424 KHAQQELKNKQAEVKKMDSGYRKDQ--EALEAVKRLKEKLEA 463
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair Rad50 ATPase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rad50 PE=3 SV=1
Length = 880
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I V++ NF H + + +N I GQNGSGKS++L A+ + K R +
Sbjct: 3 IEEVKVYNFRSHEETVVRFRKGINLIIGQNGSGKSSLLDAILVGLYWSKKLRLRGLKKDE 62
Query: 82 FIKTGCSYAM-VEVELKN 98
F + G +E++ +N
Sbjct: 63 FRRIGGKGGTRIEIKFEN 80
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 180/449 (40%), Gaps = 59/449 (13%)
Query: 20 GTITRVRLENFMCHSSL-QIELGEWVNF--ITGQNGSGKSAILTALCIAFGCRAKGTQRA 76
G + + L NF + + ++ GE NF I G NGSGKS ++ A+ G R+ R+
Sbjct: 2 GRLVGLELSNFKSYRGVTKVGFGE-SNFTSIIGPNGSGKSNMMDAISFVLGVRSNHL-RS 59
Query: 77 ATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIF--------GDSIIIERRITESTSTTVL 128
LKD I G + N G + P+ G+ ++ RI T
Sbjct: 60 NILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSY 119
Query: 129 KDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLL 188
K GK V+ + ++I +EN +++ K++ FL D ++ L
Sbjct: 120 K-IDGKTVSYK---------DYSIFLENENILI---KAKNFLVFQGDVEQIAAQSPVELS 166
Query: 189 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEK---------ELSELQRKIRNMEHVEEI 239
+ ++ SI + + + TE EL + I E +
Sbjct: 167 RMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKEGINKNEEYRKQ 226
Query: 240 TQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMK 299
L+K A +Y +++Q +E T K+ L I + KI++ L+ + F+K
Sbjct: 227 LDKKNELQKFQALWQLYHLEQQKEELTDKLSALNSEISSLKGKINNEMKSLQRSKSSFVK 286
Query: 300 KKAEIAVMVEKTSEVRRRKDEL----------QQS----ISLATKEKLELEGELVRNTSY 345
+ A I+ K + + K++L QQ+ IS K L+ +L R +Y
Sbjct: 287 ESAVISKQKSKLDYIFKDKEKLVSDLRLIKVPQQAAGKRISHIEKRIESLQKDLQRQKTY 346
Query: 346 MQKMVNRVKGLEQQVHDIQE---QHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEE 402
+++ ++K + + +E Q RN + E LK C + + E
Sbjct: 347 VERFETQLKVVTRSKEAFEEEIKQSARNYDKFKLN-ENDLKTYNC------LHEKYLTEG 399
Query: 403 DSALSEKLSKEKNEIRRISDEIEDYDKKC 431
S L EK++ N+ R I +E+E ++K+
Sbjct: 400 GSILEEKIAVLNNDKREIQEELERFNKRA 428
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 22 ITRVRLENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
I + LE F ++ + E+ ++ N ITG NGSGKS IL ++C G RA++
Sbjct: 3 IKSIVLEGFKSYAQ-RTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASS 61
Query: 79 LKDFI----KTGCSYAMVEVELKNRGEDAFKPEIF--GDSIIIERRITESTSTTVLKDHQ 132
L+D + + G + A V + N + P F D I I R++ L +
Sbjct: 62 LQDLVYKNGQAGVNKATVSITFDN-SDKKNSPLGFENNDEITITRQVIVGGRNKYLIN-- 118
Query: 133 GKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171
G ++ + + +L ++V NP ++ Q + + L+
Sbjct: 119 GMNASNNR--VQDLFGSVGLNVNNPHFLIMQGQITKVLN 155
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 22 ITRVRLENFMCHSSLQIELG--EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I + LE F +++ + G N ITG NGSGKS IL ++C G RAA L
Sbjct: 3 IKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 80 KDFI----KTGCSYAMVEVELKN 98
++ + + G + A V V N
Sbjct: 63 QELVYKQGQAGITRATVSVTFDN 85
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 22 ITRVRLENFMCHSSLQIELG--EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I + LE F +++ + G N ITG NGSGKS IL ++C G RAA L
Sbjct: 3 IKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 80 KDFI----KTGCSYAMVEVELKN 98
++ + + G + A V V N
Sbjct: 63 QELVYKQGQAGITKATVSVTFDN 85
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 22 ITRVRLENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAK 71
IT++ +ENF ++ Q E+G + + + G NGSGKS ++ A+ FG RAK
Sbjct: 160 ITKMVMENFKSYAGAQ-EVGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGYRAK 211
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=rad50 PE=3 SV=1
Length = 883
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66
I ++ +++F H+ ++ +N I GQNGSGKS+IL AL +
Sbjct: 3 IEKLIIKDFRSHALTKVNFSSGINLIIGQNGSGKSSILDALLVGL 47
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 45/245 (18%)
Query: 36 LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAM 91
+++ELG+ ++ + G NGSGKS + A+ G ++ R + ++D I +G S M
Sbjct: 26 VKLELGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGSKMEDVIFSGSSVRRPVGM 85
Query: 92 VEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGK----RVASRKQELLELI 147
EV L P + + II R V +D +G+ R + R +++ EL
Sbjct: 86 AEVSLFFDNSTGIFPLEYQEVIITRR---------VYRDGEGQYFINRSSCRLKDIHELF 136
Query: 148 DHFNIDVENPCVI----------MSQDKSREFLHSGNDKDKFKFFFKATL---------L 188
E +I + ++ R + + K++ + L L
Sbjct: 137 MDTGAGKEGFSIIGQGRVEEILNLRSEERRTLIEEASGITKYRMRKREALKRLDETEHNL 196
Query: 189 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKK 248
+++ D+L I L LE +ATI EL+ Q+ + +E + DL+ ++
Sbjct: 197 ERIRDILAEIEGQLGP-----LEEQATIAREAVELTTEQKAL----EIEIVAFDLKEVRH 247
Query: 249 KLAWS 253
KL S
Sbjct: 248 KLTTS 252
>sp|Q58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rad50 PE=1 SV=1
Length = 1005
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRA---------K 71
+ +R+ NF H + +I+ + + I G+NGSGKS+I A+ A FG + K
Sbjct: 5 LKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYDTIITK 64
Query: 72 GTQRAATLKDFIKTGCSYAMV 92
G + DF G +Y ++
Sbjct: 65 GKKSVYVELDFEVNGNNYKII 85
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 96/474 (20%), Positives = 200/474 (42%), Gaps = 80/474 (16%)
Query: 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
+ R+ L +F + I ++G NGSGKS IL AL G RA L
Sbjct: 4 VKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAERLP 63
Query: 81 DFIKT------GCSYAMVEVELK-NRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQ 132
D + G S A V V + + GE+ +P + +I+ E T T LK +
Sbjct: 64 DLVNNTFKGNRGSSEASVSVTFELHDGENLSEPGANHNGNGNGAKISKEWTVTRRLKVTK 123
Query: 133 GKRVASRK---------QELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFF- 182
G +S EL E ++ I E +++ D +R + + N K++ +
Sbjct: 124 GGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQGDVTR--IITMNSKERREIID 181
Query: 183 -------FKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEH 235
F ++ + + L + + + + ELE T L+R + +
Sbjct: 182 ELAGVAEFDRKIV-KTKETLTEVQDREERCQIIATELERT----------LERLAADRQK 230
Query: 236 VEEITQDLQRLKKKLAWSWVYD---VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILES 292
E+ Q++++K W+ V V++Q ++ ++E+ +++ + Q +D R +++
Sbjct: 231 AEKYQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQRSQAIQT 290
Query: 293 LRDCFMKKKAEIAVMVE--------KTSEVRRRKDELQQSISLATKEKLELEGELVRNTS 344
+ K A++ + E + + + ++D+LQQ + +G+ R +
Sbjct: 291 QQTELEKLNAQVKALGEEEQLAVAAQLATQKAQRDQLQQRYN---------DGD--RQIT 339
Query: 345 YMQKMVNRVKG-----LEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRM 399
Q+ V +++ +Q +H QE+ NTQ L +L+ + + L ++
Sbjct: 340 NHQQQVGQIQAEISQSQQQFLHIQQEKSFHNTQT--------LPQLEAAVQTSQQQLEQL 391
Query: 400 KEEDSAL---SEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVT 450
+ + A+ SE +E+ ++ R ++++D + RS++ +L++ Q +T
Sbjct: 392 RHQAQAIASASEAWVQEQTQLSRTVNQLQD---ELIPQRSQLAQLEERQQQLLT 442
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 22 ITRVRLENFMCHSS--LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I ++ L+ F + + + I + I G NGSGKS I A+ G + RA+ +
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63
Query: 80 KDFIKTG------CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQG 133
D I G YA V + N ED P I D ++I RR+ ++ + G
Sbjct: 64 SDLIFAGSKNEPPAKYAEVAIYFNN--EDRGFP-IDEDEVVIRRRVYPDGRSSYWLN--G 118
Query: 134 KRVASRKQELLELIDHFNIDVENPCVIMSQD 164
+R + E+L+++ I + +++ D
Sbjct: 119 RRAT--RSEILDILTAAMISPDGYNIVLQGD 147
Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 69/310 (22%)
Query: 221 KELSELQRKI----RNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRI 276
K++ E+ KI RN+E +E +D QR +LA + +L++ +IEK K I
Sbjct: 298 KKIGEVTSKIELTKRNIEVAKEELEDAQR---RLAKT-----KEELRKVLSEIEKSKGAI 349
Query: 277 PRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEV-------RRRKDELQQSISLAT 329
R + + D+ L + KK+ E V+V K E+ R D + + + T
Sbjct: 350 TRWKKRRDA-------LINEIKKKEEERNVLVVKLGEIDKTFGAAREEFDSVVKELEETT 402
Query: 330 KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQ------HVRNTQAEESEIEAKLK 383
++ E+EG + R +K+ +R+ L ++ I+E+ V + +AE SEIE KL
Sbjct: 403 RKMYEIEGNIRRLQEEKEKLHSRILFLRAKLPGIKEKINEFKAVVEDKRAEISEIEGKLS 462
Query: 384 ELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK--CREIRSEIREL 441
+Q + R+K E +++ + NE+ ++S E+E +++ E + E+R
Sbjct: 463 TIQAK---------RIKVE-----KEIEAKSNELEKVSKELESSERELIAAEAQREVRGN 508
Query: 442 QQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGR 501
+ + K + GG I + + V + +A A+E A+G
Sbjct: 509 RAAEELKRSGIGG---------------------IYGTLAELIKVKDEAYALAIEVALGN 547
Query: 502 LLNAFIVTDH 511
+ +V D
Sbjct: 548 RADNVVVEDE 557
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKNRG 100
N ITG NGSGKS +L A+C G R L + I + G + V ++ N
Sbjct: 28 NAITGLNGSGKSNVLDAICFVMGINNLNLIRVNRLDELIYKQGQAGITKGSVTIKFNNEE 87
Query: 101 EDAFKPEIFGD--SIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP 157
+ + E + D +I I R+I + +L H K +++ + +++ NP
Sbjct: 88 KPSPLQEPYRDMKNITITRQIVLGGRNRYLLNSHNAK-----PKDISDFFQSLKLNINNP 142
Query: 158 CVIMSQDK 165
++ Q K
Sbjct: 143 HFLIMQGK 150
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKN 98
N ITG NGSGKS IL ++C G RA+ L+D + + G + A V + N
Sbjct: 28 NAITGLNGSGKSNILDSICFLLGISNLTQVRASNLQDLVYKNGQAGITKATVSITFDN 85
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKNRG 100
N ITG NGSGKS IL ++C G RA+ L+D + + G + A V + N
Sbjct: 28 NAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNSD 87
Query: 101 EDAFKPEIFG----DSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVEN 156
+ K G D I + R++ L + V + + +L ++V N
Sbjct: 88 K---KQSPLGFEAHDEITVTRQVVIGGRNKYLING----VNANNTRVQDLFCSVGLNVNN 140
Query: 157 PCVIMSQDKSREFLH 171
P ++ Q + + L+
Sbjct: 141 PHFLIMQGRITKVLN 155
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 100/482 (20%), Positives = 213/482 (44%), Gaps = 84/482 (17%)
Query: 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
+I+ + L+NF + ++++ + I G NGSGKS + +C G + + RA
Sbjct: 3 SISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
Query: 81 DFIK--TG--CSYAMVEVELKNRGED----------AFKPEIFGDSII------IERRIT 120
I G YA V + N + K ++ GD+ +E++ T
Sbjct: 63 QLITYHNGKRADYAEVTLFFDNINREIPIDSDKVGICRKVKLNGDNNYYVVWYEVEKQNT 122
Query: 121 E-STSTTVLKDHQGKRVASR----KQELLELIDHFNIDVENPCVIMSQDKSREFLHSGND 175
+ +T ++ K + +V R K E+L+L+ ++ + P +I+ D R S N+
Sbjct: 123 KINTESSQKKTSKASKVEKRRRMKKNEVLDLLSKISLIADGPNIILQGDLLRIIDTSPNE 182
Query: 176 KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME- 234
+ K +L +V + V E + + +KELS+ + I ++
Sbjct: 183 RRK--------ILDEV---------------SGVAEFDEKSEKAKKELSQAREYIEKIDI 219
Query: 235 HVEEITQDLQRLKKKLAWSWVYDV-DRQLKE-----QTLKIEKLKDRIPRCQAKIDSRHS 288
+ E+ +L++LKK+ + Y V +++LK + K+E LK + + +I++
Sbjct: 220 RINEVRANLEKLKKEKEDAEKYTVYNKKLKVTKYILTSKKVEFLKMVLDETKDEIEA--- 276
Query: 289 ILESLRDCFMKK----KAEIAVMVEKTSEVRRRKD--------ELQQSISLATKEKLELE 336
L+ ++C+++ +EI + K +E+ + EL +SI ELE
Sbjct: 277 -LKETKNCYIQDISNIDSEIIGLKVKINELVNELNEKGSEEVMELHKSIK-------ELE 328
Query: 337 GELVRNTSYMQKMVNRVKGL----EQQVHDIQE--QHVRNTQAEESEIEAKLKELQCEID 390
L + + ++ ++ +K E + +D+ E + + N + + + EA+ K L EI+
Sbjct: 329 VNLNNDKNALENAIDDLKHTLKMEESKNNDLNETKEKINNIRIDTLKKEAEAKVLIKEIE 388
Query: 391 AANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVT 450
N ++++ ++ KN+ ++S+ I D K+ +++E+ +L+ N+
Sbjct: 389 KLNEERQNLEKKVEQSESQVKALKNQESKLSERINDTQKELYGLKNELNQLENTLNNRTF 448
Query: 451 AF 452
+
Sbjct: 449 DY 450
>sp|P62135|RAD50_NANEQ DNA double-strand break repair Rad50 ATPase OS=Nanoarchaeum
equitans (strain Kin4-M) GN=rad50 PE=3 SV=1
Length = 786
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
+ +V L N HS + + + +N I G NGSGK+ ++ ++ +A FG A +
Sbjct: 4 VKKVILNNVKTHSKREFDFEKGINLILGPNGSGKTTLVESIFLALFGG------DFARVI 57
Query: 81 DFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRK 140
D+ K G + + L+++G K ++E S+ L D K++AS
Sbjct: 58 DYFKKGEKTMAITLILEDKG----KTYRIRRKWVLENNAKLVESSLELIDTIPKKLASDH 113
Query: 141 QELLELIDH-FNID 153
+LL+ I H F +D
Sbjct: 114 NKLLQQIKHLFGLD 127
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
T+ ++ L+NF L +++ + I G NGSGKS I+ A+ G + RA
Sbjct: 3 TLEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFS 62
Query: 81 DFIK--TGCSYAMVEVELKNRGE-DAFKPEIFGDSIIIERRITESTST---TVLKDH-QG 133
I G EV L E +AF + D + I RRI S T V K++ +
Sbjct: 63 GLITYHNGKRADFAEVCLYFTNENNAFN--VNADKVGILRRIKSSGETDYYLVWKENDKE 120
Query: 134 KRVASRKQELLEL 146
KR K E+++L
Sbjct: 121 KRKKMTKHEIIDL 133
>sp|Q7UQV4|SMC_RHOBA Chromosome partition protein Smc OS=Rhodopirellula baltica (strain
SH1) GN=smc PE=3 SV=2
Length = 1192
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 91/428 (21%), Positives = 178/428 (41%), Gaps = 70/428 (16%)
Query: 42 EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG------CSYAMVEVE 95
+ + + G NGSGKS I+ A+ G ++ + R + D I G A +
Sbjct: 23 DGITVVVGPNGSGKSNIVDAMKWVLGSQSAKSLRGKDMSDVIFKGSQTRGPAGAAEATII 82
Query: 96 LKNRGE----DAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFN 151
N G DA PE+ + RR+ S L + Q A R +++ LI
Sbjct: 83 FDNTGGQMPVDA--PEVH-----VTRRVYRSGEGEYLINQQ----AVRLKDVKALIRGTG 131
Query: 152 IDVENPCVIMSQDKSREFLHSGNDKDKFKFF--------FKATLLQQVNDLLQSIYNHLN 203
I ++ +I Q K L + N KD+ F FKA + + L+ + +L
Sbjct: 132 IGIDAYSLI-EQGKVDRMLQA-NAKDRRAIFEEAAGISRFKAKKV-EAERRLERVQTNLT 188
Query: 204 KGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLK 263
+ +V E+ +K L+ + E + + L+ L+ +AW+ + +L
Sbjct: 189 RLGDIVDEVATRLKT-------LKSQAGKAERYRQASDRLKELRTVVAWNDWLTLSTELN 241
Query: 264 EQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQ 323
E T ++E + +H ++LR+ +++ + ++ ++ R E +Q
Sbjct: 242 EATTQLEAAQ-----------RQHRKADTLRESLEEQRQAAEMQLQTIADAAR---EAEQ 287
Query: 324 SISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLK 383
S S EL GE+ R + ++ +EQ+ I H R +A +E + +
Sbjct: 288 SRS-------ELSGEIARIGGRRES--DQTTLVEQRRTLI--GHYRRLRAMRTEAGSAIA 336
Query: 384 ELQCEIDA---ANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRE 440
+L+ I A A L+ ++++ +++ K E+ + RI +D R+ + +R
Sbjct: 337 DLRKTIAALEVAEAELADVQQKKESIAAKRDVEQATVHRIESARDDLQ---RDHLAAVRR 393
Query: 441 LQQHQTNK 448
+ +H+ N+
Sbjct: 394 VAEHEANR 401
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,181,084
Number of Sequences: 539616
Number of extensions: 11333611
Number of successful extensions: 82705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 2578
Number of HSP's that attempted gapping in prelim test: 63750
Number of HSP's gapped (non-prelim): 16024
length of query: 812
length of database: 191,569,459
effective HSP length: 126
effective length of query: 686
effective length of database: 123,577,843
effective search space: 84774400298
effective search space used: 84774400298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)