Query 003537
Match_columns 812
No_of_seqs 305 out of 2338
Neff 11.3
Searched_HMMs 29240
Date Tue Mar 26 18:04:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003537.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1586-1590//hhsearch_pdb/003537hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qks_A DNA double-strand break 1.0 1 1 177.7 15.2 181 20-214 1-189 (203)
2 3auy_A DNA double-strand break 1.0 1 1 175.5 27.1 147 18-182 1-152 (371)
3 1w1w_A Structural maintenance 1.0 1 1 163.8 17.2 150 19-185 1-172 (430)
4 4ad8_A DNA repair protein RECN 1.0 1 1 160.4 28.8 119 19-166 37-157 (517)
5 3kta_A Chromosome segregation 1.0 1 1 159.5 18.9 165 19-193 1-174 (182)
6 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 155.6 11.1 139 20-171 1-148 (149)
7 1e69_A Chromosome segregation 1.0 1 1 147.7 15.0 137 20-172 1-145 (322)
8 3qkt_A DNA double-strand break 1.0 1 1 145.3 13.6 141 20-172 1-149 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 132.6 24.2 151 20-182 1-160 (365)
10 2o5v_A DNA replication and rep 1.0 1 1 123.3 20.7 121 18-167 2-122 (359)
No 1
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=177.71 Aligned_cols=181 Identities=18% Similarity=0.276 Sum_probs=129.6
Q ss_pred EEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04748998511331214888279558998289999468999999981587677665200124343297304999999707
Q 003537 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||++|.+.+|+|++|+|+|+||||+|||||++||.|+|||.+. .|+....++++.|...+.|++.|..+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~~ 78 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEEC
T ss_conf 9799999988767156299818981899928999889999999999649855--65666123330689848999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEE-CC---CCEEEEECCCCCE---EECCHHHHHHHHHHC-CCCCCCCEEEECCCHHHHHHC
Q ss_conf 977777554699289998871-89---6748996489945---313388999998663-888789935733100454210
Q 003537 100 GEDAFKPEIFGDSIIIERRIT-ES---TSTTVLKDHQGKR---VASRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~---~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~ 171 (812)
|..|.|.|.+. .+ .+.+.+...+|.. ......++.+.+..+ +.+.+...++++|+++..|+.
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~l~ 148 (203)
T 3qks_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (203)
T ss_dssp ----------TEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHHHH
T ss_pred ----------CEEEEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHH
T ss_conf ----------9999999999768987765359997289665503477689999999973987812788995875787874
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7990358999985320899999999999999989999999998
Q 003537 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEA 214 (812)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 214 (812)
.. .++...+.....+..+....+.+.+....++..+..++.
T Consensus 149 ~~--~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 149 SD--EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp CH--HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93--999999999979789999999999999999999999999
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=175.50 Aligned_cols=147 Identities=21% Similarity=0.321 Sum_probs=109.1
Q ss_pred CCEEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 78047489985113312148882795589982899994689999999815876776652001243432973049999997
Q 003537 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (812)
Q Consensus 18 ~~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (812)
|||+|.+|.|.||++|...+|+|++|+|+|+|+||||||||+|||.|+|+|.+ |+....++++.|...+.|++.|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCC--EEEEECCCCCEEECCHHHHHHHHHH-CCCCCC--CCEEEECCCHHHHHHCC
Q ss_conf 079777775546992899988718967--4899648994531338899999866-388878--99357331004542107
Q 003537 98 NRGEDAFKPEIFGDSIIIERRITESTS--TTVLKDHQGKRVASRKQELLELIDH-FNIDVE--NPCVIMSQDKSREFLHS 172 (812)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~q~~~~~~l~~ 172 (812)
.++ ..|.|.|.+..|.+ .+++ +|..++....++...+.. +|++.. .+.++++|+++..++..
T Consensus 77 ~~~----------~~~~i~r~~~~g~~~~~~~~---ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 77 VNG----------NNYKIIREYDSGRGGAKLYK---NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEEEE---TTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred ECC----------EEEEEEEEECCCCCCEEEEE---CCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHC
T ss_conf 899----------99999999768998539998---99861164789999999986959899474326617307998735
Q ss_pred CCCHHHHHHH
Q ss_conf 9903589999
Q 003537 173 GNDKDKFKFF 182 (812)
Q Consensus 173 ~~~~~~~~~~ 182 (812)
.+..+...+
T Consensus 144 -~~~~Rr~~l 152 (371)
T 3auy_A 144 -KPSEKLETV 152 (371)
T ss_dssp -CHHHHHHHH
T ss_pred -CHHHHHHHH
T ss_conf -989999999
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=163.76 Aligned_cols=150 Identities=22% Similarity=0.355 Sum_probs=113.5
Q ss_pred CEEEEEEEEEECCCCCCE-EEEEC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCC--------
Q ss_conf 804748998511331214-88827-95589982899994689999999815876776652001243432973--------
Q 003537 19 AGTITRVRLENFMCHSSL-QIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS-------- 88 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~-~i~f~-~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~-------- 88 (812)
||+|++|.+.||++|++. .++|+ +++|+|+||||+|||||++||.|++++.+. ..|+....++|+.|..
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred -----------EEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCCCC
Q ss_conf -----------04999999707977777554699289998871-896748996489945313388999998663888789
Q 003537 89 -----------YAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVEN 156 (812)
Q Consensus 89 -----------~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 156 (812)
.+.|.+.|..+ +..+.+.|.+. .+.+.|++ +|+.+ +..++..++...++....
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~----------~~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~~i~~~~ 144 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKG----------NKLVELMRIISRNGDTSYKI---DGKTV--SYKDYSIFLENENILIKA 144 (430)
T ss_dssp ---------CCEEEEEEEEEET----------TEEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTT
T ss_pred CCCCCCCCCCCCCCCEEEECCC----------CCEEEEEEEEECCCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCC
T ss_conf 2666656776311110342168----------82799999996699569999---99886--499999999857958787
Q ss_pred CEEEECCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 93573310045421079903589999853
Q 003537 157 PCVIMSQDKSREFLHSGNDKDKFKFFFKA 185 (812)
Q Consensus 157 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 185 (812)
..+++.|++...++.. .|.++...+...
T Consensus 145 ~~~~i~qg~~~~l~~~-~p~eRr~~ld~~ 172 (430)
T 1w1w_A 145 KNFLVFQGDVEQIAAQ-SPVELSRMFEEV 172 (430)
T ss_dssp CTTEECTTCTTHHHHS-CHHHHHHTC---
T ss_pred CCEEEEHHHHHHHHHC-CHHHHHHHHHHH
T ss_conf 2004665759999858-999999999998
No 4
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=160.37 Aligned_cols=119 Identities=27% Similarity=0.374 Sum_probs=95.5
Q ss_pred CEEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE-E
Q ss_conf 804748998511331214888279558998289999468999999981587677665200124343297304999999-7
Q 003537 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL-K 97 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~-~ 97 (812)
-|+|.+|.|.||+.|...+|+|++|+|+|+|+||||||||++||.|++|+++. .++|+.|...+.|++.| .
T Consensus 37 ~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~~a~v~~~f~~ 108 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEKELLVTGFWGD 108 (517)
T ss_dssp -CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCSEEEEEEEC--
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEEEEEE
T ss_conf 66642360016166301799538980799859998789999999987367768--------9982189973899999985
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCEEEECCCHH
Q ss_conf 07977777554699289998871-8967489964899453133889999986638887899357331004
Q 003537 98 NRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKS 166 (812)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 166 (812)
.++ +..+.+.|.+. .+.+.+++ +|..+ +...+.++...+ ..+..|...
T Consensus 109 ~~~---------~~~~~i~r~~~~~g~~~~~i---ng~~v--~~~~l~~~~~~l-------i~i~~q~~~ 157 (517)
T 4ad8_A 109 GDE---------SEADSASRRLSSAGRGAARL---SGEVV--SVRELQEWAQGR-------LTIHWQHSA 157 (517)
T ss_dssp ---------------CEEEEEEETTSCCEEES---SSSBC--CHHHHHHHHTTT-------EEEESGGGG
T ss_pred CCC---------CCEEEEEEEEECCCCCEEEE---CCEEC--CHHHHHHHHHHH-------EEEECCCHH
T ss_conf 489---------97699999996388838999---99988--799999996310-------688688517
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=159.49 Aligned_cols=165 Identities=24% Similarity=0.379 Sum_probs=127.5
Q ss_pred CEEEEEEEEEECCCC--CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEE
Q ss_conf 804748998511331--214888279558998289999468999999981587677665200124343297------304
Q 003537 19 AGTITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYA 90 (812)
Q Consensus 19 ~m~i~~i~i~nf~~~--~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~~ 90 (812)
||+|.+|.|.||++| ...+++|++|+|+|+||||||||||++||.|+|++.+....|+....++++.+. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf 999999707977777554699289998871-8967489964899453133889999986638887899357331004542
Q 003537 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (812)
Q Consensus 91 ~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (812)
.|.+.|.+.+.. + ...+..++|.|.+. .+...+.+ +|..+ +..++.+++..++++...+ .+++|++...+
T Consensus 81 ~v~~~f~~~~~~-~--~~~~~~~~i~r~~~~~~~~~~~i---~g~~~--~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l 151 (182)
T 3kta_A 81 EVAIYFNNEDRG-F--PIDEDEVVIRRRVYPDGRSSYWL---NGRRA--TRSEILDILTAAMISPDGY-NIVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTCC-S--SSSSSEEEEEEEECTTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTCT-TEECTTCTTHH
T ss_pred EEEEEEECCCCC-C--CCCCCEEEEEEEEEECCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCC-EEEECCCHHHH
T ss_conf 999999578765-4--56786899999999589579999---99586--8999999999859997887-79975218899
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 107990358999985320899999
Q 003537 170 LHSGNDKDKFKFFFKATLLQQVND 193 (812)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~ 193 (812)
+.. .+.++...+.....+..+..
T Consensus 152 ~~~-~~~~r~~~ld~~~g~~~~~~ 174 (182)
T 3kta_A 152 IKM-SPLERRLLIDDISGIAEYDS 174 (182)
T ss_dssp HHS-CHHHHHHHHHHHHTC-----
T ss_pred HHC-CHHHHHHHHHHHHCHHHHHH
T ss_conf 827-99999999999878588999
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=155.55 Aligned_cols=139 Identities=24% Similarity=0.382 Sum_probs=103.6
Q ss_pred EEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04748998511331214888279558998289999468999999981587677665200124343297304999999707
Q 003537 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.|.||++|.+.+|+|++|+|+|+||||+|||||++||.|+|++... .|+....++++.|...+.|++.|..+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~ 78 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEEC
T ss_conf 9787999968534866599728976999988999889999999999759854--45588788500699748999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC-C-CCEEEE-EC--CCC-CEEECCH-HHHHHHHHHCCCCCCCC--EEEECCCHHHHHH
Q ss_conf 9777775546992899988718-9-674899-64--899-4531338-89999986638887899--3573310045421
Q 003537 100 GEDAFKPEIFGDSIIIERRITE-S-TSTTVL-KD--HQG-KRVASRK-QELLELIDHFNIDVENP--CVIMSQDKSREFL 170 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~-~~~~~~-~~--~~g-~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l 170 (812)
|..|.+.|.+.. + .+.++. .+ ..+ +.+..+. +++.+.+..+ ++...+ .++++|+++..|+
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp ----------TEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHT
T ss_pred ----------CEEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHH
T ss_conf ----------999999999867888438999752689733783447668999999997-699885316898075798795
Q ss_pred C
Q ss_conf 0
Q 003537 171 H 171 (812)
Q Consensus 171 ~ 171 (812)
.
T Consensus 148 ~ 148 (149)
T 1f2t_A 148 E 148 (149)
T ss_dssp C
T ss_pred H
T ss_conf 3
No 7
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=147.66 Aligned_cols=137 Identities=26% Similarity=0.402 Sum_probs=109.7
Q ss_pred EEEEEEEEEECCCC-CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEEEE
Q ss_conf 04748998511331-214888279558998289999468999999981587677665200124343297------30499
Q 003537 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMV 92 (812)
Q Consensus 20 m~i~~i~i~nf~~~-~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~~~v 92 (812)
|+|++|+|.||++| +..+|+|++|+|+|+||||||||||++||.|++|+.+....|+....++++.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHC
Q ss_conf 9999707977777554699289998871-896748996489945313388999998663888789935733100454210
Q 003537 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (812)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (812)
++.|.+.+ .++.+.|.+. .+.+.|++ +|..+ +..++...+...|+.... +.++.|+.+..++.
T Consensus 81 ~~~f~~~~----------~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~g~~~~~-~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 81 ELVFEENG----------EEITVARELKRTGENTYYL---NGSPV--RLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVN 144 (322)
T ss_dssp EEEEESSS----------CEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHTTTSSTTTTC-CSEEEHHHHHHHHT
T ss_pred EEEEEECC----------EEEEEEEEEECCCCEEEEE---CCCCC--CHHHHHHHHHHCCCCHHH-EEEEEHHHHHHHHH
T ss_conf 99999399----------2999999998699638999---99083--499999999983998046-06674564999986
Q ss_pred C
Q ss_conf 7
Q 003537 172 S 172 (812)
Q Consensus 172 ~ 172 (812)
.
T Consensus 145 ~ 145 (322)
T 1e69_A 145 A 145 (322)
T ss_dssp C
T ss_pred C
T ss_conf 6
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=145.30 Aligned_cols=141 Identities=21% Similarity=0.350 Sum_probs=97.6
Q ss_pred EEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04748998511331214888279558998289999468999999981587677665200124343297304999999707
Q 003537 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|++|++.||++|.+.+|+|++|+|+|+||||||||||+|||.|+|++... .++....++++.|...++|.+.|..+
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9679999976217557177279983899999999789999999999648756--67677778861789808999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEECC----CCEEEEECCCCCEEE---CCHHHHHHHHHHC-CCCCCCCEEEECCCHHHHHHC
Q ss_conf 97777755469928999887189----674899648994531---3388999998663-888789935733100454210
Q 003537 100 GEDAFKPEIFGDSIIIERRITES----TSTTVLKDHQGKRVA---SRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~----~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~ 171 (812)
+ ..|.|.|.+..+ ...+.....++.... .....+..+...+ +.+.+...++++|+.+..++.
T Consensus 79 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~ 148 (339)
T 3qkt_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (339)
T ss_dssp T----------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH
T ss_conf 9----------999999998547778864378994288255423331678999999863978765425861212999872
Q ss_pred C
Q ss_conf 7
Q 003537 172 S 172 (812)
Q Consensus 172 ~ 172 (812)
.
T Consensus 149 ~ 149 (339)
T 3qkt_A 149 S 149 (339)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=132.61 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=102.1
Q ss_pred EEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04748998511331214888279558998289999468999999981587677665200124343297304999999707
Q 003537 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (812)
Q Consensus 20 m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (812)
|+|.+|.+.||++|.+.+|+|++|+++|+||||||||||++||.|+|+|....... ......++.+...+.|.+.|..+
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~-~~~~~~~~~~~~~~~v~~~f~~~ 79 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN-SYDYVNRNAVDGTARLVFQFERG 79 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS-GGGGBCTTCTTCEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEEEEEEC
T ss_conf 95489999676686661783489869999999997899999999996688655567-50455414788738999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC--CCCEEEEE--CCCCCE--EECCHHHHH-HHHHHCCCCCCC--CEEEECCCHHHHHH
Q ss_conf 9777775546992899988718--96748996--489945--313388999-998663888789--93573310045421
Q 003537 100 GEDAFKPEIFGDSIIIERRITE--STSTTVLK--DHQGKR--VASRKQELL-ELIDHFNIDVEN--PCVIMSQDKSREFL 170 (812)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~--~~~~~~~~--~~~g~~--~~~~~~~~~-~~~~~~~~~~~~--~~~~~~q~~~~~~l 170 (812)
|..|.|.|.+.. +.....+. ..+|.. +.....++. .+...+|++... .+.+++|+.+..|+
T Consensus 80 ----------g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l 149 (365)
T 3qf7_A 80 ----------GKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLL 149 (365)
T ss_dssp ----------TEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTT
T ss_pred ----------CEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf ----------9899999998526788760799983799366513676889999999979999994568997332249898
Q ss_pred CCCCCHHHHHHH
Q ss_conf 079903589999
Q 003537 171 HSGNDKDKFKFF 182 (812)
Q Consensus 171 ~~~~~~~~~~~~ 182 (812)
.. .+.++...+
T Consensus 150 ~~-~~~~r~~~l 160 (365)
T 3qf7_A 150 IS-PPSEITEII 160 (365)
T ss_dssp TS-CHHHHHHHH
T ss_pred HC-CHHHHHHHH
T ss_conf 53-926689999
No 10
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=123.26 Aligned_cols=121 Identities=22% Similarity=0.298 Sum_probs=91.4
Q ss_pred CCEEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 78047489985113312148882795589982899994689999999815876776652001243432973049999997
Q 003537 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (812)
Q Consensus 18 ~~m~i~~i~i~nf~~~~~~~i~f~~g~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (812)
.+|+|++|.+.||+.|...+++|++|+|+|+||||+||||+++||.++++|+ . |.....++|+.|...+.|.+.|.
T Consensus 2 ~~M~i~~L~l~~~~~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~---R~~~~~~lI~~g~~~~~V~~~~~ 77 (359)
T 2o5v_A 2 GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-T---DAPRIEQLIQAGETEAYVRADLQ 77 (359)
T ss_dssp CCCCEEEEEEESBTTCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-C---CCSSGGGGBCTTCSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC-C---CCCCHHHHHCCCCCCEEEEEEEE
T ss_conf 9868769998273334456999769859999999987559999998742488-7---88777987206998299999982
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 0797777755469928999887189674899648994531338899999866388878993573310045
Q 003537 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSR 167 (812)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 167 (812)
.++ ..+.+...+..+...+.+ +|..+. +.++ .| -+++++.|+.+.
T Consensus 78 ~~~----------~~~~i~~~~~~~~~~~~i---ng~~~~-----~~~l---~g----l~~v~~~p~d~~ 122 (359)
T 2o5v_A 78 QGG----------SLSIQEVGLGRGRRQLKV---DGVRAR-----TGDL---PR----GGAVWIRPEDSE 122 (359)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEE---TTEEEC-----GGGC---CS----CCEEEECTTTTH
T ss_pred CCC----------CEEEEEEEEECCCEEEEE---CCEECC-----HHHH---HC----CHHEEECCCCHH
T ss_conf 489----------669999999879669999---992867-----9998---27----023389955376
Done!