Your job contains 1 sequence.
>003540
MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEIKPLAA
RRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKLRRGDEV
TFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLV
RDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCH
PLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVD
DVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAAT
TLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALL
LTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGT
LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA
DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL
VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL
EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKN
WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR
EKVLKQFSEDNNIMVSDSSFLKDFFSLVDGLN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003540
(812 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 1448 7.0e-290 2
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 1028 4.3e-191 5
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 305 2.4e-55 4
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 287 3.0e-43 2
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 269 2.9e-41 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 225 1.1e-38 6
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 394 1.0e-35 1
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 309 1.0e-32 4
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 307 7.2e-32 4
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 307 7.3e-32 4
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 203 7.3e-32 5
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 189 9.7e-32 7
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 202 6.6e-31 4
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 298 7.7e-31 4
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 319 2.4e-30 3
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 265 4.8e-30 4
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 278 9.1e-30 3
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 248 2.0e-29 4
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 314 1.0e-28 3
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 254 1.2e-28 4
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 218 2.5e-28 4
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 304 5.0e-28 3
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 258 5.3e-27 5
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 177 4.3e-25 4
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 203 6.7e-24 3
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 175 9.9e-24 3
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 175 9.9e-24 3
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 195 1.2e-23 5
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 195 1.2e-23 5
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 131 5.1e-23 6
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 187 6.0e-23 3
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 238 9.2e-23 3
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 186 9.7e-23 3
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 182 2.0e-22 3
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 185 2.5e-22 3
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 185 2.5e-22 3
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 187 3.0e-22 3
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 179 2.3e-21 3
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 171 3.7e-21 5
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 140 1.4e-20 5
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 141 1.7e-20 5
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 140 5.2e-20 5
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 119 5.3e-20 7
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 140 2.6e-19 5
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 140 2.8e-19 5
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 156 3.3e-19 4
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 153 4.0e-19 5
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 222 7.2e-19 4
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 139 9.8e-19 5
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 146 4.1e-18 4
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 195 4.3e-18 5
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 210 4.5e-18 4
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 126 2.6e-17 5
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 142 6.5e-17 5
CGD|CAL0001763 - symbol:orf19.1871 species:5476 "Candida ... 128 1.1e-16 4
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 171 1.3e-16 5
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 110 2.0e-16 5
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 188 4.3e-15 2
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 131 4.8e-15 5
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 101 6.2e-15 5
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 167 4.1e-14 4
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 114 1.5e-13 4
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 111 3.1e-13 5
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 124 3.8e-13 4
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 124 4.1e-13 4
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 127 5.3e-13 4
UNIPROTKB|F1N166 - symbol:SMARCA1 "Uncharacterized protei... 124 7.3e-13 4
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 109 1.2e-12 5
GENEDB_PFALCIPARUM|PF08_0048 - symbol:PF08_0048 "ATP-depe... 130 1.4e-12 4
UNIPROTKB|C0H4W3 - symbol:PF08_0048 "Probable ATP-depende... 130 1.4e-12 4
UNIPROTKB|J9NX47 - symbol:SMARCAD1 "Uncharacterized prote... 114 1.7e-12 4
UNIPROTKB|E2RG62 - symbol:SMARCAD1 "Uncharacterized prote... 114 1.7e-12 4
UNIPROTKB|J9PA79 - symbol:SMARCAD1 "Uncharacterized prote... 114 1.7e-12 4
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 124 1.7e-12 4
UNIPROTKB|I3LDG1 - symbol:LOC100738357 "Uncharacterized p... 161 2.0e-12 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 112 2.4e-12 5
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 121 2.5e-12 4
UNIPROTKB|F1RWW3 - symbol:SMARCAD1 "Uncharacterized prote... 114 2.7e-12 4
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 147 2.9e-12 3
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 112 3.3e-12 5
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 112 3.3e-12 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 111 3.4e-12 6
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 114 3.5e-12 4
UNIPROTKB|G4N1L6 - symbol:MGG_07487 "ATP-dependent DNA he... 109 4.7e-12 6
RGD|1309640 - symbol:Smarcad1 "SWI/SNF-related, matrix-as... 106 4.7e-12 4
UNIPROTKB|Q9H4L7 - symbol:SMARCAD1 "SWI/SNF-related matri... 114 5.3e-12 4
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 125 5.4e-12 5
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 119 5.6e-12 4
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 119 5.6e-12 4
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 119 5.6e-12 4
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 120 7.0e-12 4
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 119 8.7e-12 4
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 119 8.7e-12 4
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 123 9.3e-12 4
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 125 9.9e-12 4
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 122 1.0e-11 4
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 120 1.3e-11 4
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 119 1.4e-11 5
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 162 1.4e-11 5
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 121 1.5e-11 4
WARNING: Descriptions of 440 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 1448 (514.8 bits), Expect = 7.0e-290, Sum P(2) = 7.0e-290
Identities = 303/521 (58%), Positives = 370/521 (71%)
Query: 1 MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEIK-PLA 59
MGTKV+D+++STVRSVVG ++S+MDIIRALHMANHDP AAINIIFDTP+F P++ P
Sbjct: 1 MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSFAKPDVATPTP 60
Query: 60 ARRKLIISKENEIRASS--ENGTLA---------EAIAEGYSE---GSEWWFVGWGDVPA 105
+ ++ ++ + ++G++ E++ G E G+EWWFVG ++
Sbjct: 61 SGSNGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAG 120
Query: 106 MSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSK-SFVRARQAVVPCSEIVRFSTKDAGE 164
+ST KGRKL+ GDE+ FTFP S P K F R R A+ S+IVRFSTKD+GE
Sbjct: 121 LSTCKGRKLKSGDELVFTFP-HSKGLKPETTPGKRGFGRGRPALRGASDIVRFSTKDSGE 179
Query: 165 IGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATS 224
IGRIP+EW+RCLLPLVRDKK+ I G CKSAPE L IMDTI+LS+ VYINSSMF+KH ATS
Sbjct: 180 IGRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATS 239
Query: 225 LKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLL 284
K SN+AE+S + HPLPNLFRLLG+ PFKKAEFTP D Y++KRPL SKDG + SLL
Sbjct: 240 FKTASNTAEES--MFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIPTSLL 297
Query: 285 HANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALH 344
NK K + N ++ + ISD D+DNIVGVG SS ++EME P TL CELRPYQKQALH
Sbjct: 298 QLNKVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKEMETPHTLLCELRPYQKQALH 357
Query: 345 WMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404
WM QLEKG C DEAAT LHPCWEAY L D+RELVVYLN+F+G+ATI FPSTLQMARGGIL
Sbjct: 358 WMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGIL 417
Query: 405 ADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISD-QSPNLMKKEPKSL 463
ADAMGLGKTVMTI+LLL HS + +G + D I + D SP + K K L
Sbjct: 418 ADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISS-SVDDLTSPPV--KATKFL 474
Query: 464 SIDK-LIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEEG 503
DK L++Q + L NGG LI+CPMTLLGQW I+ + G
Sbjct: 475 GFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPG 515
Score = 1360 (483.8 bits), Expect = 7.0e-290, Sum P(2) = 7.0e-290
Identities = 255/303 (84%), Positives = 281/303 (92%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
WNKL+QKP+EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPAD +VIYCEL+E
Sbjct: 630 WNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSE 689
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
+E+DFY+ALFKRSKVKFDQFVEQG++LHNYASILELLLRLRQCCDHPFLVMSRGDT +YS
Sbjct: 690 SERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYS 749
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
DLNKL+KRFL G S+ LE E KDVPS A+VQEVVEEL+KGEQGECPICLEA EDAVLTPC
Sbjct: 750 DLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPC 809
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLL 731
AHRLCRECLL SW+ TSGLCPVCR T+S+Q+LITAPT SRFQVD+EKNWVES+KI LL
Sbjct: 810 AHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRFQVDVEKNWVESSKITALL 869
Query: 732 KELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN 791
+ELE L SGSKSILFSQWTAFLDLLQIPLSRNN F+RLDGTL+QQQREKVLK+FSED
Sbjct: 870 EELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDG 929
Query: 792 NIM 794
+I+
Sbjct: 930 SIL 932
Score = 40 (19.1 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 675 LCRECLLGSWKT 686
+C LLG WKT
Sbjct: 495 VCPMTLLGQWKT 506
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 1028 (366.9 bits), Expect = 4.3e-191, Sum P(5) = 4.3e-191
Identities = 190/300 (63%), Positives = 244/300 (81%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W+KLIQKPYE GD RGLKL+++IL+P+MLRRTK + D+EG IL LPP D+QVI CE +E
Sbjct: 879 WSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSE 938
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
AE+DFY ALFKRSKV+FDQFV QG++LHNYA+ILELLLRLRQCC+HPFLVMSR D+Q Y+
Sbjct: 939 AERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYA 998
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
DL+ LA+RFL + +++ ++ PSRAY++EV+++L+ G ECPICLE+ +D VLTPC
Sbjct: 999 DLDSLARRFLDNNPDSVS---QNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPC 1055
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLL 731
AHR+CRECLL SW++P+ GLCP+CR + R +LI+ PT S F+VD+ KNW ES+K++ LL
Sbjct: 1056 AHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELL 1115
Query: 732 KELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE 789
K LE + SGS KSI+FSQWT+FLDLL+IPL R FLR DG L Q+ REKVLK+F+E
Sbjct: 1116 KCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNE 1175
Score = 680 (244.4 bits), Expect = 4.3e-191, Sum P(5) = 4.3e-191
Identities = 151/309 (48%), Positives = 197/309 (63%)
Query: 120 VTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPL 179
VT T K ++ + +F + VP IVRFSTK GEIGR+P EWS + L
Sbjct: 404 VTATSTSKGRKLEDNEIVNFTFSSVAKWKVP--NIVRFSTKRCGEIGRLPMEWSNWAVSL 461
Query: 180 VRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLC 239
+R KV++LG C +AP L +M I+L + YI+SS+F ++ + GS+ +S
Sbjct: 462 LRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIHSSIFTDVSKSTWRIGSSPNLEST--L 519
Query: 240 HPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLH-ANKSKVQSAKVND 298
HPL LF+ L I P++KAEFTP +L +RKR L+ +D A+LL A + K +
Sbjct: 520 HPLLQLFKHLTIKPYQKAEFTPEELNSRKRSLNLEDDYDERAALLAIAKRRKGCQQSLEQ 579
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEA 358
D E +S ++ +VG S +EEME PSTL C LRPYQKQAL+WM + EKG +++A
Sbjct: 580 NKDEEEAPESYMNRVVGAADSYNLEEMEAPSTLTCNLRPYQKQALYWMSESEKGIDVEKA 639
Query: 359 ATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIA 418
A TLHPCWEAYR+ DER +YLN FSGEATI+FP+ QMARGGILADAMGLGKTVMTIA
Sbjct: 640 AETLHPCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMARGGILADAMGLGKTVMTIA 699
Query: 419 LLLTHSQRG 427
L+L RG
Sbjct: 700 LILARPGRG 708
Score = 86 (35.3 bits), Expect = 4.3e-191, Sum P(5) = 4.3e-191
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 436 SQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
++P G E D+ N K+ K + + T GGTLIICPM LL QW
Sbjct: 703 ARPGRGNPENEDVLVADVNADKRNRKEIHM----ALTTVKAKGGTLIICPMALLSQW 755
Score = 80 (33.2 bits), Expect = 4.3e-191, Sum P(5) = 4.3e-191
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 94 EWWFVGWGDVPAMSTSKGRKLRRGDEVTFTF 124
+W+ VG V A STSKGRKL + V FTF
Sbjct: 395 DWYLVGRSLVTATSTSKGRKLEDNEIVNFTF 425
Score = 38 (18.4 bits), Expect = 4.3e-191, Sum P(5) = 4.3e-191
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 46 DTPNFKTPEIKPLAARRKLIISKENE 71
D N K ++P L+++KE E
Sbjct: 133 DDCNVKVEVVEPELLVENLVVAKEEE 158
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 305 (112.4 bits), Expect = 2.4e-55, Sum P(4) = 2.4e-55
Identities = 112/394 (28%), Positives = 186/394 (47%)
Query: 59 AARRKLIISKENEIRASSENG--TLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKL-R 115
A+R + + + +ENG ++ E I+ + + + +G V A +T G L +
Sbjct: 158 ASRPSPLHTSREQGTGPAENGADSVTEPISRSKLQPARRYLGAFG-VEAWATRSGIGLIK 216
Query: 116 RGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRC 175
GD V +S LS++ + +R Q + RF+ EIGR+P E +
Sbjct: 217 HGDTVNIE-RARS-QPLSTRGRTGK-LRVNQKG---DVLTRFTNTAGQEIGRLPRETAEW 270
Query: 176 LLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRK---------HHATSLK 226
+ L+ K E G C AP+ L + DTI L +R ++ F+ + AT++
Sbjct: 271 VSTLLDQKICEFRGVCVFAPDRLRVNDTIYLQLRCFMRIEAFQPKELPQKQDDNRATTIF 330
Query: 227 AGSNSAEDS-VSLCH-PLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLL 284
SAE+ + L L LF +G+ K+ T D ++R K+G A +
Sbjct: 331 EQEESAEEKQLRLRQVALVQLFDEIGL----KST-TQDDEIKKQR----KEGLLRAAEMA 381
Query: 285 HANKSKVQSAKVNDVDDVEP--ISDSDVDNIVGVGYSSEIE--EMEPPSTLKCELRPYQK 340
K+ + D D EP + +D + S + E +PPS+ +LR YQK
Sbjct: 382 DQEAKKLAKSGNTDSGDEEPAELEQDQLDALYKKAQSFDFSMPEAQPPSSFAMDLRKYQK 441
Query: 341 QALHWMVQLEKGRCLDEAATTLHPCWEAY----RLLDERELVV-------YLNAFSGEAT 389
QAL+WM+ EK + ++HP WE Y + +D+++L + Y+N +SGE +
Sbjct: 442 QALYWMLSKEKDK-KSGREVSIHPLWEEYDWPLKDVDDKDLPIIEGINHFYVNPYSGELS 500
Query: 390 IEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
++FP+ Q GGILAD MGLGKT+ ++L+ +H
Sbjct: 501 LDFPAQEQHCLGGILADEMGLGKTIEMLSLVHSH 534
Score = 273 (101.2 bits), Expect = 2.4e-55, Sum P(4) = 2.4e-55
Identities = 62/187 (33%), Positives = 97/187 (51%)
Query: 492 WNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELT 550
W I P+E + R + +VQ++L+P++LRRTKS EG P++ LP +++ EL
Sbjct: 711 WKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELI 770
Query: 551 EAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRG----- 605
E E++ Y ++ R+K F+ V G +L +Y++I LLRLRQ C HP L ++
Sbjct: 771 EQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADE 830
Query: 606 -----------DTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQG 654
D +D DL +L RF +S+A + PS + + ++Q G
Sbjct: 831 EDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAG 890
Query: 655 ECPICLE 661
ECPIC E
Sbjct: 891 ECPICSE 897
Score = 214 (80.4 bits), Expect = 1.2e-45, Sum P(4) = 1.2e-45
Identities = 101/396 (25%), Positives = 169/396 (42%)
Query: 15 SVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP--NFKTP---EIKPLAARRKLIISKE 69
S+VG + S + + +++ AIN+ FD N +P + L+ R S+
Sbjct: 104 SIVGEQVSPETLSQIRKLSDGSLEKAINVYFDGSWKNAGSPGSSQTTLLSCERNA--SRP 161
Query: 70 NEIRASSENGTL-----AEAIAEGYSEGS---EWWFVGWGDVPAMSTSKGRKL-RRGDEV 120
+ + S E GT A+++ E S ++G V A +T G L + GD V
Sbjct: 162 SPLHTSREQGTGPAENGADSVTEPISRSKLQPARRYLGAFGVEAWATRSGIGLIKHGDTV 221
Query: 121 TFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLV 180
+S LS++ + +R Q + RF+ EIGR+P E + + L+
Sbjct: 222 NIE-RARS-QPLSTRGRTGK-LRVNQKG---DVLTRFTNTAGQEIGRLPRETAEWVSTLL 275
Query: 181 RDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRK---------HHATSLKAGSNS 231
K E G C AP+ L + DTI L +R ++ F+ + AT++ S
Sbjct: 276 DQKICEFRGVCVFAPDRLRVNDTIYLQLRCFMRIEAFQPKELPQKQDDNRATTIFEQEES 335
Query: 232 AEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKV 291
AE+ + L +L K T D ++R K+G A + K+
Sbjct: 336 AEEKQLRLRQVA-LVQLFDEIGLKST--TQDDEIKKQR----KEGLLRAAEMADQEAKKL 388
Query: 292 QSAKVNDVDDVEP--ISDSDVDNIVGVGYSSEIE--EMEPPSTLKCELRPYQKQALHWMV 347
+ D D EP + +D + S + E +PPS+ +LR YQKQAL+WM+
Sbjct: 389 AKSGNTDSGDEEPAELEQDQLDALYKKAQSFDFSMPEAQPPSSFAMDLRKYQKQALYWML 448
Query: 348 QLEKGRCLDEAATTLHPCWEAY----RLLDERELVV 379
EK + ++HP WE Y + +D+++L +
Sbjct: 449 SKEKDK-KSGREVSIHPLWEEYDWPLKDVDDKDLPI 483
Score = 139 (54.0 bits), Expect = 2.4e-55, Sum P(4) = 2.4e-55
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S KI LL L + +G+KS++FSQ+T+FLDL+ L++ I F+RLDGT+ Q+ R +V
Sbjct: 998 SAKIHALLAHLVRVP-AGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEV 1056
Query: 784 LKQFSE 789
L QF++
Sbjct: 1057 LAQFTK 1062
Score = 127 (49.8 bits), Expect = 1.1e-41, Sum P(4) = 1.1e-41
Identities = 32/104 (30%), Positives = 48/104 (46%)
Query: 606 DTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEA-FE 664
D +D DL +L RF +S+A + PS + + ++Q GECPIC E
Sbjct: 842 DLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEPMI 901
Query: 665 DAVLTPCAHRLCRECLLGSWKTPTS-GL---CPVCRKTISRQDL 704
D +T C H C+ CL + G+ C CR ++ QD+
Sbjct: 902 DPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDI 945
Score = 54 (24.1 bits), Expect = 1.1e-41, Sum P(4) = 1.1e-41
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
TL++ PM+LL QW K G + L + K + LR S P ++L
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVL-MYYGNEKNVNLREM-CSAGNAAAPNMIL 616
Score = 45 (20.9 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 16 VVGPEFSNMDIIRALHMANH--DPAAAINIIFDTPNFKTPEIKPLAA--RRKLIISKENE 71
+ P F + +++RA+ + +P ++ T + KTPE +PL +R + I K
Sbjct: 715 ITAP-FESKEVVRAISVVQTVLEPL----VLRRTKSMKTPEGEPLVPLPKRTIRIEKVEL 769
Query: 72 IRASSE 77
I E
Sbjct: 770 IEQERE 775
Score = 40 (19.1 bits), Expect = 2.4e-55, Sum P(4) = 2.4e-55
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 685 KTPTSGLCPVCRKTISRQDLITA 707
+T ++G CP+C + +TA
Sbjct: 885 QTESAGECPICSEEPMIDPAVTA 907
Score = 39 (18.8 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 548 ELTEAEKDFYEALFKRSKVKFD 569
E E E+D +AL+K+++ FD
Sbjct: 400 EPAELEQDQLDALYKKAQ-SFD 420
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 287 (106.1 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 78/265 (29%), Positives = 127/265 (47%)
Query: 492 WNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELT 550
W + PY+ D + L +VQSIL+ ++LRRTK + DR G I+ LPP +++ Y + +
Sbjct: 713 WQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFS 772
Query: 551 EAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCDHPFLVMSRGDTQD 609
++E+ Y++L+ ++K + + G + NY +IL LLLRLRQ CCD L +++
Sbjct: 773 DSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSET 832
Query: 610 YSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL-EAFEDAVL 668
+ D ++F N K +PS + ++ + ECPIC E ++ +L
Sbjct: 833 FDDFEFSVEQF-NSLINQFVVTGKPIPSDILKIDTLKSFE-ALITECPICCNEPIQNPLL 890
Query: 669 TPCAHRLCRECL-----LGSWKTPTSGLCPVCRKTISRQDLITA------PTGSRFQVDI 717
C H C +CL + LC CR+ + QD+ T S V
Sbjct: 891 LNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGE 950
Query: 718 EKNW-----VESTKIAVLLKELENL 737
E W ++S K+ LL +L L
Sbjct: 951 EVKWKYWNRLQSVKLNGLLGQLRQL 975
Score = 261 (96.9 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 113/430 (26%), Positives = 187/430 (43%)
Query: 20 EFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEIKPLAARRKLIISKENEIRASSENG 79
+ SN ++ L + + A+N + + N + ++ + + I KE ++ S N
Sbjct: 135 QLSNTVSVKDLSINRNTNKKALNAVSPSLNLSSN-----SSVQDVSIDKEEMMKKQSRNA 189
Query: 80 -TLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKG-RKLRRGDEVTFTFPLKSFNSLSSKFP 137
T + I + + ++G V A ST+ G R L+ G+ + S S S
Sbjct: 190 LTPLDFIMK---KNELMKYIGCFGVEAYSTASGTRTLQAGERIYLERQKLSIKSQSRNSR 246
Query: 138 SKSFVRARQAVVPC-SEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPE 196
KS + + + C S IVRF D EIG++P E + + L+ C +
Sbjct: 247 KKSKLLSINS--SCYSNIVRFCNSDHHEIGKLPTEVASVISTLMEQGFWSFEAICIYSDN 304
Query: 197 VLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFR--LLGITPF 254
++ + L + +IN + + + A ++ E+ L R LL + +
Sbjct: 305 IIRFGSNVTLQVYCFINVNHPSLNRSPFTLATNSMQEEEEHLKASFAQNKRDHLLRLFTW 364
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHA---NKSKVQSAKVNDVDDVEPISDSDV- 310
E D T K + D +SL A + S + + D +DV +SD
Sbjct: 365 IALEPDLEDCNT-KESIHIDDILKT-SSLPEARDESNSDLTPSSTEDEEDV--VSDQLAI 420
Query: 311 --DNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEA 368
D + G +E+ PST +LR YQKQAL+WM E+G D +A LHP W
Sbjct: 421 LYDKVKTSG--AELPSAPKPSTFALDLREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSR 478
Query: 369 YRLLDERELV-------------VYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVM 415
+R + E Y+N ++GE T+ FP+++ RGGILAD MGLGKT+
Sbjct: 479 FRFPKDSEFPEFFKCSSDDDNTHFYVNLYTGETTMLFPNSMPYHRGGILADEMGLGKTIE 538
Query: 416 TIALLLTHSQ 425
++L+ HS+
Sbjct: 539 VLSLI--HSR 546
Score = 132 (51.5 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 691 LCPVCRKTISRQDLITA------PTGSRFQVDIEKNW-----VESTKIAVLLKELENLCL 739
LC CR+ + QD+ T S V E W ++S K+ LL +L L
Sbjct: 918 LCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVKWKYWNRLQSVKLNGLLGQLRQLTH 977
Query: 740 SGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
S K ++FSQ+T FLD++ L + + R DGT++QQ R L+ F D ++
Sbjct: 978 SSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDV 1033
Score = 55 (24.4 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
TL++ PM+LL QW+ K +G + + KP+ L+ D P++++
Sbjct: 572 TLVVAPMSLLDQWHSEACK-VSQGTKFRSMIYYGSEKPLDLK--SCVIDTSTAPLIII 626
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 269 (99.8 bits), Expect = 2.9e-41, Sum P(5) = 2.9e-41
Identities = 72/253 (28%), Positives = 123/253 (48%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P W + P+E+ + L +V+SIL+PI LRRTKS + G+P++ LP ++
Sbjct: 644 PWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQK-KNGKPLVELPAKEVV 702
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ + + E+ Y+ R+ F + ++ G++L Y IL +LRLRQ C H L+
Sbjct: 703 IEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGG 762
Query: 604 RGDTQDY---SDLNKLAKRFLKG-SSNALE-GEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ D ++ ++ ++FL N + D DV + Y + +++ E+ EC I
Sbjct: 763 AHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMY--NLYGKIK--EENECSI 818
Query: 659 CLEA---FEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTISRQDLI---TAP 708
C + + + V+TPCAH C C+L + LCP CR IS+ L P
Sbjct: 819 CTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPISKYQLFRIRNQP 878
Query: 709 T-GSRFQVDIEKN 720
T G+ + +K+
Sbjct: 879 TKGNEIRFHTQKD 891
Score = 122 (48.0 bits), Expect = 2.9e-41, Sum P(5) = 2.9e-41
Identities = 59/234 (25%), Positives = 96/234 (41%)
Query: 135 KFPSK---SFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEIL--G 189
K P K + + + + S IVR + EIGRIP +W+R L PL D + +
Sbjct: 165 KIPGKVKLKRITTKNSTMANSAIVRVYHNER-EIGRIPEDWTRILSPLF-DLNIAVFEAS 222
Query: 190 CCKSAPEVLGIMDTIVLSIRVYINSSMFRKH-HATSLKAGSNSAEDSVSLCHPLPNLFRL 248
+ L D+ V+ I VY+ +S F K+ AT + S RL
Sbjct: 223 VLEETKSRLSTGDSFVIEIEVYLTNSSFAKNLDATENPIDLKKSNFDYSKESESEAALRL 282
Query: 249 LGITPFKKAEFTPSDLYTRK--RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPIS 306
+F S+L+ R +PL D ++ + S ++N D P+
Sbjct: 283 --------RQFAISNLFDRLAIKPLKVNDDT--------EDEEDISSQEINSGDVEHPVP 326
Query: 307 DSDVDNIVGVGYSS-EIEEME-------PPS-TLKCELRPYQKQALHWMVQLEK 351
+ ++D + S+ +++ +E PP +LR YQK L WM+ EK
Sbjct: 327 EINLDQMKEFYQSNNQLKILEGLPETTTPPKENFALDLRSYQKHGLSWMLAREK 380
Score = 117 (46.2 bits), Expect = 2.9e-41, Sum P(5) = 2.9e-41
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 361 TLHPCWEAYR-----------LLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
T++P W Y+ ++ E Y N ++GE ++E P RGGILAD MG
Sbjct: 407 TMNPLWRKYKWPYATEATQDPTQNQTEKYFYANMYNGELSLEKPVIKSSLRGGILADEMG 466
Query: 410 LGKTVMTIALL 420
LGKT+ T+AL+
Sbjct: 467 LGKTIATLALV 477
Score = 102 (41.0 bits), Expect = 2.9e-41, Sum P(5) = 2.9e-41
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSG--SKSILFSQWTAFLDLLQIPLSRN 764
AP S FQ+ + S+KI L++ L+ L SK I+FSQ++++LD++Q L
Sbjct: 892 APDYS-FQLYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLA 950
Query: 765 NIPFL--RLDGTLNQQQREKVLKQFSE 789
+ F+ + DG LN R K+L+ F++
Sbjct: 951 SEEFIVFKFDGRLNMNDRTKLLESFNQ 977
Score = 53 (23.7 bits), Expect = 2.9e-41, Sum P(5) = 2.9e-41
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 480 TLIICPMTLLGQWNKLIQK 498
TLI+ PM+LL QW +K
Sbjct: 499 TLIVVPMSLLFQWKSEFEK 517
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 225 (84.3 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 49/125 (39%), Positives = 71/125 (56%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
WN+ I KP + D+ G ++ +L I+LRR K PIL LP + + +E
Sbjct: 1185 WNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINN-TPILKLPDRTIMIKRDIFSE 1243
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ--D 609
E+ Y+ L+K +K KF+ + G +L NYA +LE+LLRLRQ CDHP+LV + D D
Sbjct: 1244 EEEQIYQDLWKTAKTKFNNLFQSGSLLKNYAHVLEMLLRLRQVCDHPYLVQKKQDNNNDD 1303
Query: 610 YSDLN 614
+D N
Sbjct: 1304 AADNN 1308
Score = 183 (69.5 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 720 NWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQ 777
NW STKI LL EL + + SK ++FSQWT+ LDLL+ PL+ N F+RLDG + Q
Sbjct: 1665 NWKSSTKIDSLLDELNKVFKNEPDSKCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQ 1724
Query: 778 QQREKVLKQFSEDNNI 793
+QRE +K+F E+ N+
Sbjct: 1725 KQREVAIKRFKEEPNV 1740
Score = 86 (35.3 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 366 WEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQ 425
W +R L E E ++ L G + F +GG+L D MG+GKT+ IA +L +
Sbjct: 855 WMHHRELSEPEEIISLVDLDGSKDLSF------VKGGLLCDDMGMGKTIEIIATILANKS 908
Query: 426 RGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI 465
++ S + ++ Y+ ++ + N +++ +L +
Sbjct: 909 NYPINS-SSDIENNNNNNNNYNNNNNNTNQVQQSNCTLIV 947
Score = 76 (31.8 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 648 LQKG-EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698
L KG + EC IC+E E+ +T C H C C+ + T L P T
Sbjct: 1360 LGKGIKDQECTICMETLENPSITTCGHFFCTLCIQKNLIADTK-LVPTINNT 1410
Score = 73 (30.8 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 324 EMEPPSTLKCELRPYQKQALHWM 346
EM+ P K LR YQ+QAL+WM
Sbjct: 834 EMDEPKQFKLTLRTYQRQALYWM 856
Score = 55 (24.4 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 480 TLIICPMTLLGQWNKLI 496
TLI+CP+++L QW+ I
Sbjct: 944 TLIVCPVSVLQQWHSEI 960
Score = 42 (19.8 bits), Expect = 3.1e-35, Sum P(6) = 3.1e-35
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 691 LCPVCRKTISRQDL 704
LCP+C+++I + +
Sbjct: 1590 LCPICKQSIKQSTI 1603
Score = 41 (19.5 bits), Expect = 3.9e-35, Sum P(6) = 3.9e-35
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 656 CPICLEAFEDAVLTPCAHR 674
CPIC ++ + + + P + +
Sbjct: 1591 CPICKQSIKQSTIKPISFK 1609
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 394 (143.8 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 99/303 (32%), Positives = 156/303 (51%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 78 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 136
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H +L+ T S
Sbjct: 137 EERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLL-----TNAVS 191
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
A F G+ E K + + L G EC ICL++ V+T C
Sbjct: 192 SNGPSA--FSLGNDTPEELRKKLIRKMKLI------LSSGSDEECAICLDSLTVPVITHC 243
Query: 672 AHRLCRECLLGSWKTPTS-GLCPVCRKTISRQDLITAPTGSRFQVDIEKN----WVESTK 726
AH C+ C+ + CP+CR I +L+ P D EK W S+K
Sbjct: 244 AHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPP-EELARDSEKKSDMEWTSSSK 302
Query: 727 IAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVL 784
I L+ L +L KS++ SQ+T FL L++IPL + F RLDG++ Q++R + +
Sbjct: 303 INALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESI 362
Query: 785 KQF 787
+ F
Sbjct: 363 QCF 365
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 309 (113.8 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 92/301 (30%), Positives = 151/301 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L+E
Sbjct: 608 WYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSE 666
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L ++ G +
Sbjct: 667 EERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHL-LTNGMSSSGP 725
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
+ + K L + K + S +E L C F PC
Sbjct: 726 SRSDTPEELRK----MLIEKMKIILSSGSDEECAICLDSLTFPVITHCAHVF----CKPC 777
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS-RFQVDIEKN--WVESTKIA 728
+C+ ++ S + P + CP+CR I +L+ P D E + W S+KI
Sbjct: 778 ---ICQ--VIHS-EQPHAK-CPLCRNEIHGDNLLECPPEELACDSDKESSMEWKSSSKIN 830
Query: 729 VLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
L+ L L KS++ SQ+T FL L++ PL + F RLDG++ Q++R + +++
Sbjct: 831 ALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQR 890
Query: 787 F 787
F
Sbjct: 891 F 891
Score = 94 (38.1 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 35/105 (33%), Positives = 49/105 (46%)
Query: 357 EAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMT 416
E + L P WE +L Y N + + E P + GGILAD MGLGKT+
Sbjct: 255 ENSKELPPFWE-----QRNDL--YYNTITNFSVKERPENVH---GGILADDMGLGKTLTA 304
Query: 417 IALLLTHSQRGGLSGIQSASQPSDGGIEGYD--ISDQSPNLMKKE 459
IA++LT+ G + + + G E D I + N+ KKE
Sbjct: 305 IAVILTNFD-DGRPLLSKRGKKNHPGKEYKDETIKRRGSNMDKKE 348
Score = 78 (32.5 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
EMEP ++ L P+QKQAL WM+ E + L P WE
Sbjct: 229 EMEPAEAIETPLLPHQKQALAWMIARENSK-------ELPPFWE 265
Score = 52 (23.4 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLIICP+++L W
Sbjct: 472 TLIICPLSVLSNW 484
Score = 37 (18.1 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 319 SSEIEEMEPPSTLKCELRPYQ 339
S EIE E P +K +L+ Q
Sbjct: 397 SEEIETSELPQKMKGKLKNVQ 417
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 307 (113.1 bits), Expect = 7.2e-32, Sum P(4) = 7.2e-32
Identities = 90/301 (29%), Positives = 152/301 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 612 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 670
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H L+ + G + S
Sbjct: 671 EERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNAGSSSGPS 730
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
N + K L + K + S +E L C F PC
Sbjct: 731 G-NDTPEELRK----KLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVF----CKPC 781
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS-RFQVDIEKN--WVESTKIA 728
+C+ ++ + + P + CP+CR I +L+ P + + N W S+KI
Sbjct: 782 ---ICQ--VIQN-EQPHAK-CPLCRNDIHGDNLLECPPEELACDTEKKSNTEWTSSSKIN 834
Query: 729 VLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
L+ L +L KS++ SQ+T FL L++ PL + F RLDG++ Q++R + ++
Sbjct: 835 ALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQC 894
Query: 787 F 787
F
Sbjct: 895 F 895
Score = 86 (35.3 bits), Expect = 7.2e-32, Sum P(4) = 7.2e-32
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 357 EAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMT 416
E + L P WE +L Y N + + + P + GGILAD MGLGKT+
Sbjct: 255 ENSKDLPPFWE-----QRNDL--YYNTITNFSEKDRPENVH---GGILADDMGLGKTLTA 304
Query: 417 IALLLTHSQRG 427
IA++LT+ G
Sbjct: 305 IAVILTNFHDG 315
Score = 80 (33.2 bits), Expect = 7.2e-32, Sum P(4) = 7.2e-32
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCL 355
EMEP ++ L P+QKQAL WMV E + L
Sbjct: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSKDL 260
Score = 52 (23.4 bits), Expect = 7.2e-32, Sum P(4) = 7.2e-32
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLIICP+++L W
Sbjct: 476 TLIICPLSVLSNW 488
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 307 (113.1 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 92/306 (30%), Positives = 155/306 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 614 WHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 672
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL----VMSRGDT 607
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L V S G +
Sbjct: 673 EERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLANAVSSSGPS 732
Query: 608 QDYSDLNKLAKRFLKGSSNALE-GEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDA 666
+ + +L K+ +K L G D++ ++ L P+
Sbjct: 733 GNDTP-EELRKKLIKKMKLILSSGSDEECAI------CLDSLM------APVITHCAH-V 778
Query: 667 VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS-RFQVDIEKN--WVE 723
PC +C+ ++ + + P + CP+CR I LI P + + N W
Sbjct: 779 FCKPC---ICQ--VIQN-EQPHAK-CPLCRNDIHGDSLIECPPEELACNTEKKSNMEWTS 831
Query: 724 STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S+KI L+ L +L KS++ SQ+T FL L++ PL + F RLDG++ Q++R
Sbjct: 832 SSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRV 891
Query: 782 KVLKQF 787
+ ++ F
Sbjct: 892 ESIQCF 897
Score = 85 (35.0 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 374 ERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
E+ +Y N + + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 265 EQRSDLYYNTITNFSEKDRPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
Score = 81 (33.6 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
+EMEP ++ L P+QKQAL WMV E +E L P WE
Sbjct: 228 QEMEPAEAIETPLLPHQKQALAWMVSRENS---EE----LPPFWE 265
Score = 52 (23.4 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLIICP+++L W
Sbjct: 478 TLIICPLSVLSNW 490
Score = 38 (18.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 283 LLHANKSKVQSAKVNDVDD 301
+L S V+S+K DV+D
Sbjct: 455 MLKRGASAVESSKKTDVED 473
Score = 38 (18.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 319 SSEIEEMEP---PSTLKCELRPYQKQ 341
SS+ EE+EP P +K +L+ Q +
Sbjct: 397 SSDSEEVEPSELPQKMKGKLKRTQSE 422
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 203 (76.5 bits), Expect = 7.3e-32, Sum P(5) = 7.3e-32
Identities = 44/106 (41%), Positives = 64/106 (60%)
Query: 496 IQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD 555
I+ P +G K +Q++L+ IMLRRTK T +G+PI+ LPP + + + + E+
Sbjct: 538 IKGPISRNSLQGYKKLQAVLRAIMLRRTKG-TLLDGQPIINLPPKTINLSQVDFSVEERS 596
Query: 556 FYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
FY L S+ +F + G + NYA+IL +LLRLRQ CDHP LV
Sbjct: 597 FYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLV 642
Score = 135 (52.6 bits), Expect = 7.3e-32, Sum P(5) = 7.3e-32
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
K+I+FSQWT LDL+++ L N+I F RLDGT++ R++ +K+FS D ++
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDV 878
Score = 104 (41.7 bits), Expect = 7.3e-32, Sum P(5) = 7.3e-32
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEP 460
GGILAD GLGKTV TIAL+L L S +Q ++ ++ D D+S N +K P
Sbjct: 249 GGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEA-LD-LDADDESENAFEK-P 305
Query: 461 KS 462
+S
Sbjct: 306 ES 307
Score = 85 (35.0 bits), Expect = 7.3e-32, Sum P(5) = 7.3e-32
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 612 DLNKLAKRFLKGSSNALEGED-KDVPSRAYVQEVVEELQKGEQGE-CPICLEAFEDAVLT 669
D +L KR+ S + E K +P +++V L + E C +C + ED V+T
Sbjct: 637 DHPQLVKRYNSDSVGKVSEEAVKKLPK----EDLVSLLSRLESSPICCVCHDPPEDPVVT 692
Query: 670 PCAHRLCRECLLGSWKTPTSGLCPV--CRKTISRQDLITAPT 709
C H C +C+ + T CP CR+ ++ + + T
Sbjct: 693 LCGHIFCYQCV-SDYITGDEDTCPAPRCREQLAHDVVFSKST 733
Score = 62 (26.9 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 436 SQPSDG-GIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW-N 493
S+ S+G G+ G D K E S S K ++ GTLI+CP +++ QW
Sbjct: 307 SKASNGSGVNG----DSGIKKAKGEEASTSTRKFNRKRPA---AGTLIVCPASVVRQWAR 359
Query: 494 KLIQKPYEE 502
+L +K +E
Sbjct: 360 ELDEKVTDE 368
Score = 47 (21.6 bits), Expect = 7.3e-32, Sum P(5) = 7.3e-32
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 327 PPSTLKCELRPYQKQALHWMVQLE 350
P L L +QK AL WM Q E
Sbjct: 218 PAGLLSVPLMKHQKIALAWMFQKE 241
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 612 DLNKLAKRFLKGSSNALEGEDK 633
DL+ L FL GSS+ G K
Sbjct: 36 DLSTLRPHFLSGSSSGANGHTK 57
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 189 (71.6 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 489 LGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSST-DREGRPILVLPPADMQVIYC 547
L W KLI +P + L+L++ ++ PI+LRR KS D + LP + +++Y
Sbjct: 1202 LKTWRKLIDRP------KNLELLKKVINPILLRREKSEILDFK------LPKKNKEIVYL 1249
Query: 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+ E E D Y+ LF ++ + +G IL NYA++L LLLRLRQCCDH L+
Sbjct: 1250 DFNENEADDYDTLFSVAQETLQKISCRGGILKNYATVLALLLRLRQCCDHFHLI 1303
Score = 169 (64.5 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 54/178 (30%), Positives = 86/178 (48%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYR---LLDERELV-VYL 381
E P +LK +L+ +QK+ L WM+ E+ + + + W Y+ ++ E V Y
Sbjct: 905 EAPDSLKSQLKHHQKEGLWWMLGREQKPFITYNMS-VEEYWRLYKTSPIVGEAASVEFYY 963
Query: 382 NAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDG 441
N + ++ P + GG+L D MGLGKTVM+IAL++++ + S +
Sbjct: 964 NCICDKISLTPPKSKHKIAGGLLCDEMGLGKTVMSIALIMSNHP------VFSTHRQQK- 1016
Query: 442 GIEGYD-ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
E YD I DQ L + + S K + + TLIICP +L+ QW I+K
Sbjct: 1017 --EAYDEIKDQ---LRNRNQQLRSFQKSVPKPKA-----TLIICPPSLVSQWKSEIKK 1064
Score = 127 (49.8 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 724 STKIAVLLKELENLCLSGS-----KSILFSQWTAFLDLLQIPLSRN----NIPFLRLDGT 774
STK+ LL +++N + K ++ SQWT+ LDL++ L +N N ++R DG
Sbjct: 1453 STKVKTLLGDIQNDLIDNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGR 1512
Query: 775 LNQQQREKVLKQFSEDNNI 793
+ QQ++K +KQ +ED+++
Sbjct: 1513 CSHQQKDKAIKQLNEDDDV 1531
Score = 58 (25.5 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSG-----LCPVCRKTISRQD 703
C C + + V C H C +C + P + LCP C + QD
Sbjct: 1314 CNSCKDIAVNPVKNHCGHDFCLDCFEDLVRNPDNNNNRVSLCPECDSELILQD 1366
Score = 53 (23.7 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 608 QDYSDLNKLAKRFLKGSSNALEGEDKDVPS 637
++ S+L K K L S+N +E E KD PS
Sbjct: 86 EEVSEL-KPTKTGLNDSTNEIESEKKDTPS 114
Score = 46 (21.3 bits), Expect = 1.0e-31, Sum P(6) = 1.0e-31
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 296 VNDVDDVEPISD-SDVDNIVGVGYSSEIEE 324
+N+++D+ ISD SD D Y E+EE
Sbjct: 343 LNEIEDLNKISDNSDEDE-----YEEELEE 367
Score = 45 (20.9 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 256 KAEFTPSDLYTRKRPLDSKDGCGLHASLLHANK 288
K E P DL+ +K L ++ L + L H K
Sbjct: 887 KNEINPRDLFVKKALLTTEAPDSLKSQLKHHQK 919
Score = 41 (19.5 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 20/101 (19%), Positives = 43/101 (42%)
Query: 91 EGSEWWFV--GWGDVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAV 148
+ EW + P + +K + + G+++ F + K P KSF+ +
Sbjct: 710 DSKEWLLLLKSIDQCPLLIDTKCKNIINGEKLYFRYE-------PEKLP-KSFLPKTENR 761
Query: 149 VPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILG 189
+P + + S + G +G + + +LPL+R + + G
Sbjct: 762 LPFTCYSQESKEFYGFLGFPSVDLNALILPLIRKNYIRLGG 802
Score = 41 (19.5 bits), Expect = 5.7e-19, Sum P(6) = 5.7e-19
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 451 QSPNLMKKEPKSLSIDKLIKQT 472
QSP L K P S S+ + T
Sbjct: 511 QSPQLKSKSPLSKSVSPVSSST 532
Score = 40 (19.1 bits), Expect = 9.7e-32, Sum P(7) = 9.7e-32
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 51 KTPE--IKPLAARRKLIISKENEIRASSEN 78
KT E +KP+ R L+I E EIR N
Sbjct: 225 KTEETTVKPIKPR--LVIRNELEIRTKHLN 252
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 202 (76.2 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 51/133 (38%), Positives = 73/133 (54%)
Query: 492 WNKLIQKP---YEE---GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVI 545
WNK + KP Y G + L +LK I+LRRTK + L LPP + +
Sbjct: 446 WNKYVAKPITVYGSFGLGKRAMILLKHKVLKDILLRRTKLGRAAD----LALPPRIITLR 501
Query: 546 YCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM--- 602
L E D+YE+L+K S+ +F+ ++E G +++NYA I +LL RLRQ DHP+LV+
Sbjct: 502 RDTLDVKEFDYYESLYKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSN 561
Query: 603 SRGDTQDYSDLNK 615
S G + D NK
Sbjct: 562 SSGANANLVDENK 574
Score = 181 (68.8 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 52/163 (31%), Positives = 83/163 (50%)
Query: 644 VVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703
+V+E K EQ EC +C + ED V+T CAH C+ CL+G + CP C K ++
Sbjct: 569 LVDE-NKSEQ-ECGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCSKLLTVDW 626
Query: 704 LITAPTGSR--------FQVDIEKNWVE------STKIAVLLKELENLC-LSGS-KSILF 747
A T + F+ N ++ STKI L +E+ + GS K+I+F
Sbjct: 627 TTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVF 686
Query: 748 SQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSED 790
SQ+T+FLDL+ L + + ++L G++ R+ + +F ED
Sbjct: 687 SQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKED 729
Score = 79 (32.9 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQ 425
Q GGILAD MG+GKT+ I+L+L +
Sbjct: 155 QSVAGGILADEMGMGKTIQAISLVLARRE 183
Score = 61 (26.5 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 478 GGTLIICPMTLLGQWNKLIQKPYEEGDER-----GLKLVQSILKPIM----LRRTKSSTD 528
G TL++CP+ + QW I + G + G K ++I K M + T S+ +
Sbjct: 194 GCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNI-KEFMNYDFVLTTYSTVE 252
Query: 529 REGRPILVLPPADMQVIYCELTEAEKDFY 557
E R ++ P+ +Q YC K FY
Sbjct: 253 SEYRRNIM--PSKVQCAYCS-----KSFY 274
Score = 58 (25.5 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEK 351
E EPPS L L YQK+ L W + E+
Sbjct: 127 ETAEPPSDLIMPLLRYQKEFLAWATKQEQ 155
Score = 39 (18.8 bits), Expect = 5.8e-29, Sum P(4) = 5.8e-29
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 301 DVEPISDSDVDNIVGVGYSSEIEEME 326
D EP + S D+ +G + + EE E
Sbjct: 28 DEEPYAISSDDDSIGSEFQGDEEEEE 53
Score = 37 (18.1 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 338 YQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATI 390
Y+ + +E G ++ A + +D LVVY N+ A +
Sbjct: 517 YKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANL 569
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 298 (110.0 bits), Expect = 7.7e-31, Sum P(4) = 7.7e-31
Identities = 90/306 (29%), Positives = 156/306 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 616 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 674
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL----VMSRGDT 607
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H L V S G +
Sbjct: 675 EERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNAVSSSGPS 734
Query: 608 QDYSDLNKLAKRFLKGSSNALE-GEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDA 666
+ + +L K+ +K L G D++ ++ L P+
Sbjct: 735 GNDTP-EELRKKLIKKMKLILSSGSDEECAI------CLDSLT------VPVITHCAH-V 780
Query: 667 VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS-RFQVDIEKN--WVE 723
PC +C+ ++ + + P + CP+CR I +L+ P + + N W
Sbjct: 781 FCKPC---ICQ--VIQN-EQPHAK-CPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTS 833
Query: 724 STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S+KI L+ L +L KS++ SQ+T FL L++ PL + F RLDG++ Q++R
Sbjct: 834 SSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRV 893
Query: 782 KVLKQF 787
+ ++ F
Sbjct: 894 ESIQCF 899
Score = 85 (35.0 bits), Expect = 7.7e-31, Sum P(4) = 7.7e-31
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 374 ERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
E+ +Y N + + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 265 EQRSDLYYNTITNFSEKDRPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
Score = 79 (32.9 bits), Expect = 7.7e-31, Sum P(4) = 7.7e-31
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
EMEP ++ L P+QKQAL WMV E + L P WE
Sbjct: 229 EMEPAEAVETPLLPHQKQALAWMVSRENSK-------ELPPFWE 265
Score = 54 (24.1 bits), Expect = 7.7e-31, Sum P(4) = 7.7e-31
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 448 ISDQSPNLMKKE-PKSLSIDKLIKQTNTLINGGT-LIICPMTLLGQW 492
++ +P + KK K S + K+T+ T LIICP+++L W
Sbjct: 446 LTSSTPTMKKKMLKKGASAVEGSKKTDVEERPRTTLIICPLSVLSNW 492
Score = 41 (19.5 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 223 TSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRK 268
TS KA + E S C P++ + G + K+E + S RK
Sbjct: 346 TSEKADGLTKEMEGSRCSGEPSISDVKGKNKYPKSELSSSRPKRRK 391
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 319 (117.4 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 83/264 (31%), Positives = 133/264 (50%)
Query: 531 GRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLR 590
GR ++ LP + V Y L+ E++ YE + K ++ ++G + NYA +L +L+R
Sbjct: 592 GRTLVQLPERRVFVQYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMR 651
Query: 591 LRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQK 650
LRQCC HP LV G+ Y+ + + G ++ R +Q++ L
Sbjct: 652 LRQCCCHPSLV---GN---YTAAD-------------VPGTPSELRERL-IQKITLVLNS 691
Query: 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTS-GLCPVCRKTISRQDLITAPT 709
G EC ICL++ V+T CAH CR C+ ++ CP+CR I ++L+ P
Sbjct: 692 GSDEECAICLDSLRQPVITYCAHVFCRPCICEVIRSEKEQAKCPLCRAQIKTKELVEYP- 750
Query: 710 GSRFQV--DIEKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNN 765
G + + D +NW S+K L+ L L KS++ SQ+T FLD+L++ L
Sbjct: 751 GEQAETRSDTGENWRSSSKALALMSNLLKLRNEDPTVKSMVVSQFTGFLDVLEVALREYG 810
Query: 766 IPFLRLDGTLNQQQREKVLKQFSE 789
F RLDG+L Q+ R K ++ F +
Sbjct: 811 FSFTRLDGSLIQRARAKAIEDFQD 834
Score = 214 (80.4 bits), Expect = 8.5e-19, Sum P(3) = 8.5e-19
Identities = 46/117 (39%), Positives = 71/117 (60%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P + W+++IQ+P GD GLK +Q+++K I LRRTK+S GR ++ LP + V
Sbjct: 547 PFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVG-GRTLVQLPERRVFV 605
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
Y L+ E++ YE + K ++ ++G + NYA +L +L+RLRQCC HP LV
Sbjct: 606 QYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCCCHPSLV 662
Score = 96 (38.9 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 29/83 (34%), Positives = 41/83 (49%)
Query: 357 EAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMT 416
E + L P WE + L Y N + A + P + GGILAD MGLGKT+ T
Sbjct: 241 ENSNDLPPFWEENKGL-------YFNVLTNFAVKKRP---EKVLGGILADDMGLGKTLTT 290
Query: 417 IALLLTHSQRGGLSGIQSASQPS 439
IAL++++ G ++ PS
Sbjct: 291 IALIVSNFHNGKPLPLEKCKGPS 313
Score = 62 (26.9 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
+EMEP + L +QKQAL WM E + L P WE
Sbjct: 214 KEMEPAEAVCTPLLSHQKQALSWMSSREN-------SNDLPPFWE 251
Score = 51 (23.0 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLI+CP+++L W
Sbjct: 418 TLIVCPLSVLSNW 430
Score = 40 (19.1 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 356 DEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
++A++ LH +LDE +V NA +A +E S
Sbjct: 480 NKASSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQS 518
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 265 (98.3 bits), Expect = 4.8e-30, Sum P(4) = 4.8e-30
Identities = 61/176 (34%), Positives = 102/176 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E+ + ++ +LK ++LRRTK S +G+PI +PP + ++ +E E + Y+AL ++
Sbjct: 700 EKAMTQLRILLKAVLLRRTKHSKI-DGKPIFDIPPRFSEKVHAVFSEDELELYKALEAKT 758
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGS 624
+++F++++E G + NY++IL LLLRLRQ C HP L+ D+S KL
Sbjct: 759 QLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLIT------DFSV--KL-------- 802
Query: 625 SNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLT-PCAHRLCREC 679
+ A EG D + + EVV L+ E ECP+C++A ++ ++ PC H C EC
Sbjct: 803 NEASEGVDFIANAEQFSNEVVARLRDNENLECPVCIDAVDNPIIFFPCGHGTCSEC 858
Score = 126 (49.4 bits), Expect = 4.8e-30, Sum P(4) = 4.8e-30
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 717 IEKNWVESTKIAV---LLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDG 773
+EK W+ S KI +++++E + K I+FSQ+T+ LDLL+IP++R + R DG
Sbjct: 994 LEKTWITSAKIEKTMEIIRDIERRD-NNEKIIIFSQFTSLLDLLEIPIAREGHRYRRYDG 1052
Query: 774 TLNQQQREKVLKQFSED 790
++ R + F++D
Sbjct: 1053 SMKPADRNSAVLDFTDD 1069
Score = 80 (33.2 bits), Expect = 4.8e-30, Sum P(4) = 4.8e-30
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 400 RGGILADAMGLGKTVMTIALLLT 422
+GGILAD MGLGKT+ IAL+++
Sbjct: 491 KGGILADDMGLGKTIQAIALMVS 513
Score = 58 (25.5 bits), Expect = 9.5e-28, Sum P(3) = 9.5e-28
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 420 LLTHSQRGGLSGIQSASQ-PSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLING 478
LL H Q+ GL+ ++S + GGI D+ + K +++++ + + ++
Sbjct: 471 LLDH-QKLGLAWMRSKEECDQKGGILADDMG------LGKTIQAIAL-MVSRPSSDPERK 522
Query: 479 GTLIICPMTLLGQWNKLIQKPYEEG 503
TLII P+ L+ QW + I+K G
Sbjct: 523 TTLIIAPVALMQQWKREIEKMLSPG 547
Score = 44 (20.5 bits), Expect = 4.8e-30, Sum P(4) = 4.8e-30
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEK 351
P+ LK L +QK L WM E+
Sbjct: 464 PAALKYPLLDHQKLGLAWMRSKEE 487
Score = 39 (18.8 bits), Expect = 8.7e-26, Sum P(3) = 8.7e-26
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 206 LSIRVYINSSMFRKHHATSLKAGSNSAED 234
L IR Y N F++ + LK + ++
Sbjct: 672 LRIRPYANLDRFKRDFSAPLKTNNKHLQE 700
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 278 (102.9 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 86/303 (28%), Positives = 147/303 (48%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
+N ++ +P D L+Q+++ I LRR K G L LP +V+ +
Sbjct: 584 FNSVLIRPLMSDDPDSRLLLQALMSTICLRRRKDM----GFVNLRLPTLTSRVLRIKFHP 639
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
EK+ Y+ +K F + Y+ +LE++LRLRQ C+H L +R
Sbjct: 640 HEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHLLEVILRLRQVCNHWALAKNR------- 692
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
L+KLA K + L ++ +A +Q++++ ++ Q CPICL+ E V+T C
Sbjct: 693 -LDKLAAILDKHQTVPLTPDN----IKA-LQDMLQ-IRIESQEICPICLDILETPVITAC 745
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQV--DIEKNWVE-STKIA 728
AH +C+ CP+CR I + + AP + D+ + S+KI
Sbjct: 746 AHAFDHDCI--EQVIVRQHKCPICRAEIENKSSLVAPAADLGENTDDVSADPDNPSSKIE 803
Query: 729 VLLKELE-NLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQF 787
L+K L + + +K+++FSQWT+FL L++ L I F R+DG + R++ +++F
Sbjct: 804 ALIKILTAHGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQFARIDGKMTSIARDRSMRRF 863
Query: 788 SED 790
S D
Sbjct: 864 STD 866
Score = 141 (54.7 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 45/133 (33%), Positives = 66/133 (49%)
Query: 296 VNDVDDVEPISDSDVDNIVGVGYSSEIEEM---EPPSTLKCELRPYQKQALHWMVQLEKG 352
+N P + V G+ S++E M E PS+L L PYQ+Q L WM+ E
Sbjct: 314 INQSSTFNPREINRVTESFGLK-ESDLENMPMVESPSSLSTTLLPYQRQGLAWMISKENP 372
Query: 353 RCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGK 412
L + + W+ +E + N + +T PS +A GGILAD MGLGK
Sbjct: 373 G-LPTSDNDVVQLWK-------KEGNKFTNIATNFSTTAPPS---LASGGILADDMGLGK 421
Query: 413 TVMTIALLLTHSQ 425
T+ I+L+L++SQ
Sbjct: 422 TIQIISLILSNSQ 434
Score = 45 (20.9 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 480 TLIICPMTLLGQWNKLIQK 498
TLII P+ ++ W IQ+
Sbjct: 444 TLIISPVGIMSNWRNQIQE 462
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 248 (92.4 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 58/170 (34%), Positives = 88/170 (51%)
Query: 496 IQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD 555
I+ P +G + +Q+ILK +MLRRTK S +G+PI+ LPP +++ + T E+D
Sbjct: 854 IKNPITRNPVKGYQKLQAILKTVMLRRTKGSL-LDGKPIISLPPKSIELRKVDFTVEERD 912
Query: 556 FYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNK 615
FY L S+ +F ++ E G + NY +IL +LLRLRQ CDHP LV S +
Sbjct: 913 FYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGL 972
Query: 616 LAKRFLKGSSNALEGEDKDVPSRA--------YVQEVVEELQKGEQGECP 657
K+ +S A+ G D P A + ++ + E G+ CP
Sbjct: 973 AKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDSNHCP 1022
Score = 115 (45.5 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 739 LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788
++G K+I+FSQWT L+LL+ L ++I + RLDGT++ R+K ++ F+
Sbjct: 1121 VAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFN 1170
Score = 103 (41.3 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEP 460
GGILAD GLGKTV TIAL+L + + +++ +E + + +P
Sbjct: 579 GGILADDQGLGKTVSTIALILKERSKPA-QACEESTKKEIFDLES-ETGECAPLKPSGRS 636
Query: 461 KSLSIDKLIKQTNTL-------ING----GTLIICPMTLLGQW-NKLIQKPYEEGD 504
K +L+ N + + G GTL++CP +++ QW ++L +K E +
Sbjct: 637 KHFEHSQLLSNENKVGGDSVGKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEAN 692
Score = 80 (33.2 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV--C--RKTIS 700
C IC +A EDAV + C H C++C+ T S CP C R TIS
Sbjct: 986 CGICNDAPEDAVASVCGHVFCKQCIYERL-TGDSNHCPFANCNVRLTIS 1033
Score = 47 (21.6 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLI 482
SD N+M P + +D + KQ + +I+ +++
Sbjct: 130 SDPDGNMMAFNPVNCDVDTVSKQDDKIIDSKSML 163
Score = 46 (21.3 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLE 350
E + P L L +Q+ AL WM Q E
Sbjct: 544 EAILPDGVLTVPLLRHQRIALSWMAQKE 571
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 314 (115.6 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 90/301 (29%), Positives = 154/301 (51%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 614 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 672
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H +L+ + + S
Sbjct: 673 EERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPS 732
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
N + K L + K + S +E L C F PC
Sbjct: 733 G-NDTPEELRK----KLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVF----CKPC 783
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKN---WVESTKIA 728
+C+ ++ + + P + CP+CR I +L+ P + +K+ W S+KI
Sbjct: 784 ---ICQ--VIQN-EQPHAK-CPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKIN 836
Query: 729 VLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
L+ L +L KS++ SQ+T FL L++IPL + F RLDG++ Q++R + ++
Sbjct: 837 ALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQC 896
Query: 787 F 787
F
Sbjct: 897 F 897
Score = 86 (35.3 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 357 EAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMT 416
E + L P WE +L Y N + + + P + GGILAD MGLGKT+
Sbjct: 255 ENSKELPPFWE-----QRNDL--YYNTITNFSEKDRPENVH---GGILADDMGLGKTLTA 304
Query: 417 IALLLTHSQRG 427
IA++LT+ G
Sbjct: 305 IAVILTNFHDG 315
Score = 80 (33.2 bits), Expect = 4.4e-28, Sum P(3) = 4.4e-28
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
EMEP ++ L P+QKQAL WMV E + L P WE
Sbjct: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSK-------ELPPFWE 265
Score = 52 (23.4 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLIICP+++L W
Sbjct: 478 TLIICPLSVLSNW 490
Score = 39 (18.8 bits), Expect = 7.5e-24, Sum P(3) = 7.5e-24
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 319 SSEIEEMEPPSTLKCELRPYQKQ 341
S EIE E P +K +L+ Q +
Sbjct: 400 SEEIETSELPQKMKGKLKNVQSE 422
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 254 (94.5 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 71/248 (28%), Positives = 129/248 (52%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
+K + +LK ++LRRTK+ T +G+PIL LPP +L+ +E +FY L ++++
Sbjct: 614 MKRFRGLLKAVLLRRTKN-TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQ 672
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNA 627
+++++G I +Y S+L LLLRLRQ C HP+L+++R D +D +
Sbjct: 673 MRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDND--------------S 718
Query: 628 LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDA-VLTPCAHRLCRECLLG---- 682
+ +++ + ++ Y E V L+ E +C +C++ + ++ PC H LCRECL
Sbjct: 719 FQAKNRAIYNQIY-PEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
Query: 683 ----SWKTPTSGL---CPVCRKTISRQDLITAPTGSRFQ-----VDIEKNWVESTKIAVL 730
+ +T + C VC + I + L++ R+ VD + N + + I+ L
Sbjct: 778 SEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDAD-NKLRTENISEL 836
Query: 731 L-KELENL 737
L K+ N+
Sbjct: 837 LPKQYSNI 844
Score = 110 (43.8 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 719 KNWVESTKIAVLLKELENLCLSG--SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLN 776
K+W STKI L ++ + K ++FSQ+ +FL+L +P + I +L G L+
Sbjct: 859 KHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLS 918
Query: 777 QQQREKVLKQFSEDNNI 793
+R + L F D N+
Sbjct: 919 TAERNQALINFEVDPNV 935
Score = 85 (35.0 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 400 RGGILADAMGLGKTVMTIALLLT 422
+GGILAD MGLGKTV +ALL+T
Sbjct: 410 KGGILADDMGLGKTVQALALLVT 432
Score = 55 (24.4 bits), Expect = 8.0e-25, Sum P(3) = 8.0e-25
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 417 IALLLTHSQRGGLSGIQSASQPSD-GGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTL 475
I L+ H Q+ GL ++ + S GGI D+ + K ++L++ + + +
Sbjct: 387 IPTLMEH-QKEGLMWLKRLEESSKKGGILADDMG------LGKTVQALAL-LVTRPPESK 438
Query: 476 INGGTLIICPMTLLGQW-NKLIQK 498
TLII P++LL QW N+++ K
Sbjct: 439 SVKTTLIITPVSLLQQWHNEILTK 462
Score = 50 (22.7 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQ 341
+L +N KVQ + ++++ D D + +V I E P + L +QK+
Sbjct: 344 NLSDSNNQKVQDDQQQQLEEL--FKDLD-EQLVN---DPTIREGTPAGLIPT-LMEHQKE 396
Query: 342 ALHWMVQLEK 351
L W+ +LE+
Sbjct: 397 GLMWLKRLEE 406
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 218 (81.8 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 51/137 (37%), Positives = 79/137 (57%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P + + I+ P +G K +Q++L+ IMLRRTK T +G+PI+ LPP + +
Sbjct: 598 PYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKG-TLLDGKPIINLPPKVVNL 656
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
+ + AE+ FY+ L S+ +F + + G + NYA+IL LLLRLRQ CDHP LV R
Sbjct: 657 SQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLV-KR 715
Query: 605 GDTQDYSDLNKLAKRFL 621
++ +++ A R L
Sbjct: 716 YNSDPVGKVSEAAVRRL 732
Score = 122 (48.0 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
K+I+FSQWT LDL+++ + + I F RLDGT++ R++ +K+FS+ ++
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDV 944
Score = 92 (37.4 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPN 454
GGILAD GLGKTV TIAL+L L S Q ++ + D D+S N
Sbjct: 304 GGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALV--LDADDESDN 355
Score = 83 (34.3 bits), Expect = 5.3e-14, Sum P(4) = 5.3e-14
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 612 DLNKLAKRFLKGSSNAL-EGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTP 670
D +L KR+ + E + +P A ++ L+ C C E E V+T
Sbjct: 708 DHPQLVKRYNSDPVGKVSEAAVRRLPREAR-SRLINRLESSS-AICYECNEPPEKPVVTL 765
Query: 671 CAHRLCRECLLGSWKTPTSGLCPV--CRKTISRQDLITAPTGSR 712
C H C EC+L + T CPV C++ ++R D++ + + R
Sbjct: 766 CGHIFCYECVL-EYITGDENTCPVPRCKQQLAR-DVVFSESSLR 807
Score = 67 (28.6 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 278 GLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSE-IEEME-PPSTLKCEL 335
G AS+LH S + +D P +D + + ++ + E + PP TL L
Sbjct: 222 GTSASVLHHAGSSDPMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPL 281
Query: 336 RPYQKQALHWMVQLE 350
+QK AL WM Q E
Sbjct: 282 MRHQKIALAWMFQKE 296
Score = 61 (26.5 bits), Expect = 3.6e-25, Sum P(4) = 3.6e-25
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 432 IQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQ 491
+ S S+ S G D +D S ++ K E + + Q GTLI+CP +++ Q
Sbjct: 370 VSSNSETSVLSACGNDENDSS-DMEKAEDEEANSSTRAFQWKRPA-AGTLIVCPASVVRQ 427
Query: 492 W-NKLIQKPYEE 502
W +L +K EE
Sbjct: 428 WARELDEKVSEE 439
Score = 46 (21.3 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 684 WKTPTSGLCPVCRKTISRQ 702
WK P +G VC ++ RQ
Sbjct: 409 WKRPAAGTLIVCPASVVRQ 427
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 304 (112.1 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 91/312 (29%), Positives = 149/312 (47%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P T W+++IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + +
Sbjct: 602 PFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIK-GKPVLELPERKVFI 660
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
+ L+ E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L +
Sbjct: 661 QHITLSVEERKIYQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQICCHVHLPTNG 720
Query: 605 GDTQD--YSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEA 662
+ D SD + ++ L + D + + + C
Sbjct: 721 TSSSDPSRSDTPEELRKMLVTKMKLILSSGSDEECSICLDSLTFPV-------ITHCAHV 773
Query: 663 FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT-----GSRFQVDI 717
F PC C + + P + CP+CR I +L+ P S + D+
Sbjct: 774 F----CKPCI------CQVIQREQPHAK-CPLCRSNIHGHNLLECPPEELACDSDNKSDM 822
Query: 718 EKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL 775
E W S+KI L+ L L KS++ SQ+T FL L++ PL + F RLDG++
Sbjct: 823 E--WTSSSKINALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSM 880
Query: 776 NQQQREKVLKQF 787
Q++R + ++ F
Sbjct: 881 AQKKRVESIQCF 892
Score = 90 (36.7 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 357 EAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMT 416
E + L P WE L ++ +Y N + + E P + GGILAD MGLGKT+
Sbjct: 254 ENSKELPPFWE---LRND----LYYNTITNFSVKERPENVH---GGILADDMGLGKTLTA 303
Query: 417 IALLLTHSQRG 427
IA++LT+ G
Sbjct: 304 IAVILTNFDDG 314
Score = 77 (32.2 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWE 367
EMEP ++ L P+QKQAL WM+ E + L P WE
Sbjct: 228 EMEPAEAVETPLLPHQKQALAWMIARENSK-------ELPPFWE 264
Score = 52 (23.4 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 480 TLIICPMTLLGQW 492
TLIICP+++L W
Sbjct: 473 TLIICPLSVLSNW 485
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 258 (95.9 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 63/178 (35%), Positives = 99/178 (55%)
Query: 483 ICPMTLLGQWNKLIQKPYEEGDERGLKL--VQSILKPIMLRRTKSSTDREGRPILVLPPA 540
I P + WNK I Y ++ L L V+ I PI+LRRTK S + G I+ LP
Sbjct: 935 IKPYGTIEWWNKEIVD-YVNKNKLNLALDVVRKISSPILLRRTKKSKTKNGNSIISLPKK 993
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
++ + E + E+DFY A+F RSK KFD ++ G +L +Y+ +L+LLLRLRQCC HP L
Sbjct: 994 NIHLEKLEFSLEEEDFYRAIFYRSKTKFDTYMHDGNVLSHYSHVLQLLLRLRQCCSHPLL 1053
Query: 601 VMSRGDTQDYS--DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEV-VEELQKGEQGE 655
+ S+ ++++ D+N LK ++ + D D+ Y+ V+++ K E +
Sbjct: 1054 LFSKPFFEEWNKDDMNDA----LKNKTDKEDNGD-DLKKSEYMNNTDVKKVFKSENNK 1106
Score = 164 (62.8 bits), Expect = 7.6e-17, Sum P(5) = 7.6e-17
Identities = 54/194 (27%), Positives = 94/194 (48%)
Query: 603 SRGDTQDYSDL-NKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLE 661
S+ D + +++ N L F+ GS+ + + D D Y +E+ E L+ G +C ICLE
Sbjct: 1119 SKVDHSNENNIGNNLIYNFILGSTKS-KNIDDD-----YSKEL-EILKNGNVMQCCICLE 1171
Query: 662 AFEDAVLTPCAHRLCRECLLGSWKTP--TSGLCPVCRKTISRQDLIT-----APTGSRFQ 714
+++ C H +C++C + CP C IS + L T +P +
Sbjct: 1172 DATYPLISKCLHIMCKKCADDYFHLTQIADKKCPQCDNYISLKSLKTLQENKSPLDELLK 1231
Query: 715 VDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
+ N+V STK+ L + ++N + ++FSQW FL +++ L+ NI DG+
Sbjct: 1232 KMKKDNFVYSTKLKKLFEHVQNDMQNELHIVVFSQWIGFLKIIEKLLNLYNIANKIYDGS 1291
Query: 775 LNQQQREKVLKQFS 788
L +QR+ L F+
Sbjct: 1292 LTFEQRKATLNWFN 1305
Score = 110 (43.8 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 362 LHPCWEAYRLLD-----ERELVV------YLNAFSGEATIEFPSTLQMARGGILADAMGL 410
L+P WE + + E++ +V Y+N +G ++ +P + RGGILAD MGL
Sbjct: 630 LNPLWEEHAFIPNIKIYEKDKLVCILKYFYVNKLTGAFSLTYPQFVPPFRGGILADEMGL 689
Query: 411 GKTVMTIALLLTH 423
GKT+ +I L+ TH
Sbjct: 690 GKTIQSIGLI-TH 701
Score = 78 (32.5 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 454 NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEEG 503
NL K+ + I+ IK + GGTL+I P+ L+ QW + I++ +EG
Sbjct: 714 NLENKKNFTYLIENTIKGVH-FKRGGTLVIAPLALIYQWKEEIERHTKEG 762
Score = 45 (20.9 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 277 CGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVD-------NIVGV------GYSSE-I 322
C H +L + K K + + ++ +S+++++ N+V V GY E
Sbjct: 389 CTPHKALGYIESKKTIGTKEEE-EIIDSLSENEIEEKNEEATNLVFVEEKFRGGYLLEDF 447
Query: 323 EEMEPPST-LKCELRPYQKQALHWMVQLE 350
EE+ P K L+ YQ + + WM E
Sbjct: 448 EEIYPNEYYFKPMLKTYQAEGVWWMYTRE 476
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 245 LFRLLGITPFKKAEFTPSDL--YTRKRPLD 272
LFR LGI P+ E+ ++ Y K L+
Sbjct: 929 LFRFLGIKPYGTIEWWNKEIVDYVNKNKLN 958
Score = 41 (19.5 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 34 NHDPAAAINIIFDTPNFKTPEIKPLAARRKLIISKENE 71
N + ++ I II D N+K +IK + + SK+ E
Sbjct: 64 NKEMSSDIEIIEDIGNYKYEKIKLEKLKEHQLNSKKAE 101
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 177 (67.4 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 64/241 (26%), Positives = 107/241 (44%)
Query: 265 YTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEE 324
+ RK L K ++ N ++ + N+ +D E +D DN+V ++++
Sbjct: 508 FQRKGSLQIKGSGDINFGFASINNNESLDSNNNNNEDNESYIRNDCDNLV----RKKLDK 563
Query: 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAF 384
+E P L+ +L +QK+ + WM + E + T L W Y L + Y N+F
Sbjct: 564 IEQPEWLRSKLLEHQKEGIWWMRKRELEPFITNGQT-LSEHWSIY-LSKSSGVTFYYNSF 621
Query: 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIE 444
+ T+ P + GG+L D MGLGKT+M ++L L + I S+ + I
Sbjct: 622 CDKITMFEPKGRKSISGGMLCDKMGLGKTLMILSLSLKNHP------IYSSHE-----IH 670
Query: 445 GYDISDQSPNLMKKEPK---------SLSIDKLIKQTNTLINGGTLIICPMTLLGQW-NK 494
++D P L+K+ K LS T + TL+I P ++L QW N+
Sbjct: 671 KEILNDIKPQLIKRRKKYFIGTDSSSDLSSSSSSSPTKITLPKSTLVILPFSVLKQWRNQ 730
Query: 495 L 495
L
Sbjct: 731 L 731
Score = 159 (61.0 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 33/112 (29%), Positives = 61/112 (54%)
Query: 489 LGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCE 548
+ W KL++ ++ +++ K+++ L PI+L R+K + + ++I E
Sbjct: 909 IATWRKLVESIQDQSEKK--KILKKYLNPIILSRSKKDVRIQQNQVYE------EIIELE 960
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ E D Y +FK S F++ ++G + H+Y +L L+LRLR+CCDH L
Sbjct: 961 FDQNESDAYSLVFKDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSL 1012
Score = 100 (40.3 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 717 IEKNWVESTKIAV--LLKELENLCLSGS-KSILFSQWTAFLDLLQIPLSRNN----IPFL 769
I++N + S K + ++ L+N K I+FS WT FLDL++ L N+ + F
Sbjct: 1306 IDENEINSLKNSQKNIIANLKNAKGKNQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFC 1365
Query: 770 RLDGTLNQQQREKVLKQFSEDNN 792
R+DG L +RE ++ F +N
Sbjct: 1366 RIDGKLPISKREAIIDSFQAKSN 1388
Score = 44 (20.5 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYAS 583
+++ Y+ L K+ K FD+F E L + +S
Sbjct: 1094 QQEKYKQLKKKQKDLFDKFKEDSTTLSSSSS 1124
Score = 44 (20.5 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 608 QDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVE-ELQKGE 652
QD S+ K+ K++L + +D + +E++E E + E
Sbjct: 920 QDQSEKKKILKKYLNPIILSRSKKDVRIQQNQVYEEIIELEFDQNE 965
Score = 42 (19.8 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 656 CPICLEAF-----EDAVLTPCAHRLCRECLL 681
C C E E+ +++ C H C+ C +
Sbjct: 1027 CSSCFEEIPSPHNENLLISDCDHLYCKACYI 1057
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 724 STKIAVLLKELENLCLSGSK 743
STKI LLK+++ + +
Sbjct: 1166 STKIKALLKDIQETMIGNDE 1185
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 203 (76.5 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 66/207 (31%), Positives = 102/207 (49%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGL-KLVQSILKPIMLRRTKS----STDREGRP-I 534
L I P W I P +G+E + K ++ +L IMLRRTK+ + ++G
Sbjct: 430 LHINPFNDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGA 489
Query: 535 LVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQC 594
L L + + C+ E+E+DFY L + + FV G++ NY +IL LLLRLRQ
Sbjct: 490 LKLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQA 549
Query: 595 CDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALE-GEDKDVPSRAYVQEVVEELQKGEQ 653
C+HP + + + QD N L G++N + D+DV A + E VE + ++
Sbjct: 550 CNHPQSLNFQFE-QDVDAFNAL-----DGAANTNKLASDQDVDDLANLLETVE-IGSRKK 602
Query: 654 GECPICLEAFEDAVLTPCAH-RLCREC 679
C IC+ A L P H + C++C
Sbjct: 603 SFCTICM-----AELPPDFHEKKCKDC 624
Score = 114 (45.2 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 718 EKNWVESTKIAVLLKEL------ENLCLSG-SKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+K +S+KI +LK L E+ + G K+I+FSQ+T FLD++ + L + I F+R
Sbjct: 640 DKTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVR 699
Query: 771 LDGTLNQQQREKVLKQFSEDN 791
DG +N + REK L D+
Sbjct: 700 YDGRMNNRAREKSLDLLRSDS 720
Score = 92 (37.4 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 370 RLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
RLLD + V L T+ S A GGILAD MGLGKT+ IAL+L+H
Sbjct: 232 RLLDHQ--VQGLTWLKSRETVSKSS----ASGGILADDMGLGKTIQMIALILSH 279
Score = 55 (24.4 bits), Expect = 4.3e-20, Sum P(3) = 4.3e-20
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 420 LLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK-EPKSLSIDKLIKQTNTLING 478
LL H Q GL+ ++S S G ++D L K + +L + + + I
Sbjct: 233 LLDH-QVQGLTWLKSRETVSKSSASGGILADDM-GLGKTIQMIALILSHPLPKKKHSIKS 290
Query: 479 GTLIICPMTLLGQWNKLIQ 497
TL++ P++L+ QW +Q
Sbjct: 291 -TLVVAPLSLIKQWESEVQ 308
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 175 (66.7 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 48/149 (32%), Positives = 77/149 (51%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN 382
E+++ P+ + LRPYQ +A++WM+ E LH W LD + +Y N
Sbjct: 296 EDVQHPALIPI-LRPYQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDG--VKIYYN 352
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGG 442
F+G E+P GGILAD MGLGKTV +AL+LTH+ R + + P +G
Sbjct: 353 PFTGCVIREYPFAGPQWPGGILADEMGLGKTVEVLALILTHT-REDIKQ-DDLTLP-EGE 409
Query: 443 IEGYDISDQSPNLMKKEPKSLSIDKLIKQ 471
+ + + Q P+ K+ K+ ++ +K+
Sbjct: 410 LVNFFVPPQ-PSQGSKKKKTREMELKLKE 437
Score = 159 (61.0 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 46/152 (30%), Positives = 77/152 (50%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL---LGSWKTPT--SGL-CPVCRKTISRQDL--- 704
CPIC + AVLT C H C EC+ + + T S + C +CR+T S +++
Sbjct: 1431 CPICARQLGKQWAVLT-CGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYV 1489
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLS 762
TA T ++ + DI STK+ +++ L+ + G+KS++FS W LD++ L
Sbjct: 1490 FTAETANQ-EDDIPVKGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALY 1548
Query: 763 RNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
NN+ F +++G Q+ K + NI+
Sbjct: 1549 DNNMTFSQINGISKFQENLSAFK-YDPKINIL 1579
Score = 86 (35.3 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 35/125 (28%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++L+ +PY + + L S++ IM R K + + +PP + + +
Sbjct: 876 WDQLLYRPYCRKNSQPL---YSLIAKIMWRSAKKDVIDQ----IQIPPQTENIHWLHFSP 928
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +AL K K+ D ++ + SIL LLRLRQ C HP V
Sbjct: 929 VERHFYHRQHEVCCQDALAKLRKIS-DWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
Query: 602 MSRGD 606
RG+
Sbjct: 988 --RGE 990
Score = 45 (20.9 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 478 GGTLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
G TLII P ++ QW I + R L + Q + K
Sbjct: 716 GATLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 753
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 175 (66.7 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 48/149 (32%), Positives = 77/149 (51%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN 382
E+++ P+ + LRPYQ +A++WM+ E LH W LD + +Y N
Sbjct: 291 EDVQHPALIPI-LRPYQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDG--VKIYYN 347
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGG 442
F+G E+P GGILAD MGLGKTV +AL+LTH+ R + + P +G
Sbjct: 348 PFTGCVIREYPFAGPQWPGGILADEMGLGKTVEVLALILTHT-REDIKQ-DDLTLP-EGE 404
Query: 443 IEGYDISDQSPNLMKKEPKSLSIDKLIKQ 471
+ + + Q P+ K+ K+ ++ +K+
Sbjct: 405 LVNFFVPPQ-PSQGSKKKKTREMELKLKE 432
Score = 159 (61.0 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 46/152 (30%), Positives = 77/152 (50%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL---LGSWKTPT--SGL-CPVCRKTISRQDL--- 704
CPIC + AVLT C H C EC+ + + T S + C +CR+T S +++
Sbjct: 1431 CPICARQLGKQWAVLT-CGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYV 1489
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLS 762
TA T ++ + DI STK+ +++ L+ + G+KS++FS W LD++ L
Sbjct: 1490 FTAETANQ-EDDIPVKGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALY 1548
Query: 763 RNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
NN+ F +++G Q+ K + NI+
Sbjct: 1549 DNNMTFSQINGISKFQENLSAFK-YDPKINIL 1579
Score = 86 (35.3 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 35/125 (28%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++L+ +PY + + L S++ IM R K + + +PP + + +
Sbjct: 876 WDQLLYRPYCRKNSQPL---YSLIAKIMWRSAKKDVIDQ----IQIPPQTENIHWLHFSP 928
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +AL K K+ D ++ + SIL LLRLRQ C HP V
Sbjct: 929 VERHFYHRQHEVCCQDALAKLRKIS-DWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
Query: 602 MSRGD 606
RG+
Sbjct: 988 --RGE 990
Score = 45 (20.9 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 478 GGTLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
G TLII P ++ QW I + R L + Q + K
Sbjct: 716 GATLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 753
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 195 (73.7 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 492 WNKLIQKPYEEGDERG--LK----LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVI 545
+NK I KP + RG L L +L I+LRRTK E + + L P +++
Sbjct: 1132 FNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKG----ERKSDINLKPLIIKIR 1187
Query: 546 YCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602
+L++ EKDFYE+L+K++ +F+ +V +LHNYA I +LL RLRQ DHP+L++
Sbjct: 1188 KDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFDLLSRLRQAADHPYLII 1244
Score = 110 (43.8 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 42/145 (28%), Positives = 66/145 (45%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVV 379
S+++EM P +K +L+ + + EK LD + Y L+ +EL
Sbjct: 167 SKLKEMAKPYEIKNDLKCRNSFEMLINEENEKINSLDYL--NVEKKITNYNLIIPKELKY 224
Query: 380 YLNAFSGEATIEFPSTLQMA--RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQ 437
L + E I + +M+ +GGILAD MG+GKT+ I L+L + L I+ +
Sbjct: 225 DLLQYQKEG-IYWMINQEMSNVKGGILADEMGMGKTIQAITLILCQ-KLNKLKEIKKDER 282
Query: 438 PSDGGIEGYDISDQSPNLMKKEPKS 462
D GY D+ KK+ KS
Sbjct: 283 SDDHDKVGYKNDDEEDEKKKKKKKS 307
Score = 104 (41.7 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 724 STKIAVLLKELENLCLS-GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
STKI + +E++N+ + K ++FSQ+ + LDL++ L ++NI +L G ++ R
Sbjct: 1476 STKIEAVYEEVQNVINNTDDKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNN 1535
Query: 783 VLKQFSEDNNI 793
+L F++D +
Sbjct: 1536 ILYNFNQDKQL 1546
Score = 54 (24.1 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 476 INGGTLIICPMTLLGQWNKLIQKPYEE 502
+ G TLII P+ + QW I+K +E
Sbjct: 439 LKGQTLIIAPVAAVMQWKSEIEKFVDE 465
Score = 46 (21.3 bits), Expect = 2.3e-16, Sum P(5) = 2.3e-16
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV 314
SL H N K + K N + DS++D IV
Sbjct: 598 SLNHNNTKKNKGKKNNQIKQRNAQKDSNIDVIV 630
Score = 45 (20.9 bits), Expect = 2.3e-16, Sum P(5) = 2.3e-16
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQ--SPNLMKKEPKSLSIDKLIKQTNTLINGG 479
T ++ SG+ + + G+ D+ +KKE + SI+K K + + GG
Sbjct: 798 TETEEKDTSGVHNEDGDTSMGVTNQKGKDKFCKERKIKKEDEKSSIEKKRKTVDVISVGG 857
Score = 44 (20.5 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 691 LCPVCRKTISRQDLITAPTGSRFQVDIEKNWVES 724
+C +C + + +++ I+ F K ++ES
Sbjct: 1273 VCGICLENVQKRNNISTKCNHNFHKSCLKQYIES 1306
Score = 42 (19.8 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIE-EMEPPSTLKCELRPYQK 340
S++ Q+ K+N +DV + D +N++ V I+ E +K K
Sbjct: 368 SVILIESDDTQNEKMNHKNDVMAENKIDTENVLNVKKIKNIKKECVNNKKIKNNNNNNNK 427
Query: 341 QAL--HWMVQLEKGRCLDEAATTLHPCW--EAYRLLDERELVVYLNAFSGEATI 390
+ + KG+ L A W E + +DE L VY+ + G + I
Sbjct: 428 SNFKKNDFINKLKGQTLIIAPVAAVMQWKSEIEKFVDENILNVYV--YHGNSKI 479
Score = 39 (18.8 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 257 AEFTPSDLYTRKRPLDSKDGCGLH 280
A++ +LY + KD G+H
Sbjct: 786 AKYIRKELYDENTETEEKDTSGVH 809
Score = 39 (18.8 bits), Expect = 9.9e-08, Sum P(5) = 9.9e-08
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS 637
GD + LNK +G++ ++GE ++ S
Sbjct: 857 GDVKRDMSLNKRRNTTNRGTTMKIKGETREYAS 889
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 195 (73.7 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 492 WNKLIQKPYEEGDERG--LK----LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVI 545
+NK I KP + RG L L +L I+LRRTK E + + L P +++
Sbjct: 1132 FNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKG----ERKSDINLKPLIIKIR 1187
Query: 546 YCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602
+L++ EKDFYE+L+K++ +F+ +V +LHNYA I +LL RLRQ DHP+L++
Sbjct: 1188 KDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFDLLSRLRQAADHPYLII 1244
Score = 110 (43.8 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 42/145 (28%), Positives = 66/145 (45%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVV 379
S+++EM P +K +L+ + + EK LD + Y L+ +EL
Sbjct: 167 SKLKEMAKPYEIKNDLKCRNSFEMLINEENEKINSLDYL--NVEKKITNYNLIIPKELKY 224
Query: 380 YLNAFSGEATIEFPSTLQMA--RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQ 437
L + E I + +M+ +GGILAD MG+GKT+ I L+L + L I+ +
Sbjct: 225 DLLQYQKEG-IYWMINQEMSNVKGGILADEMGMGKTIQAITLILCQ-KLNKLKEIKKDER 282
Query: 438 PSDGGIEGYDISDQSPNLMKKEPKS 462
D GY D+ KK+ KS
Sbjct: 283 SDDHDKVGYKNDDEEDEKKKKKKKS 307
Score = 104 (41.7 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 724 STKIAVLLKELENLCLS-GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
STKI + +E++N+ + K ++FSQ+ + LDL++ L ++NI +L G ++ R
Sbjct: 1476 STKIEAVYEEVQNVINNTDDKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNN 1535
Query: 783 VLKQFSEDNNI 793
+L F++D +
Sbjct: 1536 ILYNFNQDKQL 1546
Score = 54 (24.1 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 476 INGGTLIICPMTLLGQWNKLIQKPYEE 502
+ G TLII P+ + QW I+K +E
Sbjct: 439 LKGQTLIIAPVAAVMQWKSEIEKFVDE 465
Score = 46 (21.3 bits), Expect = 2.3e-16, Sum P(5) = 2.3e-16
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV 314
SL H N K + K N + DS++D IV
Sbjct: 598 SLNHNNTKKNKGKKNNQIKQRNAQKDSNIDVIV 630
Score = 45 (20.9 bits), Expect = 2.3e-16, Sum P(5) = 2.3e-16
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQ--SPNLMKKEPKSLSIDKLIKQTNTLINGG 479
T ++ SG+ + + G+ D+ +KKE + SI+K K + + GG
Sbjct: 798 TETEEKDTSGVHNEDGDTSMGVTNQKGKDKFCKERKIKKEDEKSSIEKKRKTVDVISVGG 857
Score = 44 (20.5 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 691 LCPVCRKTISRQDLITAPTGSRFQVDIEKNWVES 724
+C +C + + +++ I+ F K ++ES
Sbjct: 1273 VCGICLENVQKRNNISTKCNHNFHKSCLKQYIES 1306
Score = 42 (19.8 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIE-EMEPPSTLKCELRPYQK 340
S++ Q+ K+N +DV + D +N++ V I+ E +K K
Sbjct: 368 SVILIESDDTQNEKMNHKNDVMAENKIDTENVLNVKKIKNIKKECVNNKKIKNNNNNNNK 427
Query: 341 QAL--HWMVQLEKGRCLDEAATTLHPCW--EAYRLLDERELVVYLNAFSGEATI 390
+ + KG+ L A W E + +DE L VY+ + G + I
Sbjct: 428 SNFKKNDFINKLKGQTLIIAPVAAVMQWKSEIEKFVDENILNVYV--YHGNSKI 479
Score = 39 (18.8 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 257 AEFTPSDLYTRKRPLDSKDGCGLH 280
A++ +LY + KD G+H
Sbjct: 786 AKYIRKELYDENTETEEKDTSGVH 809
Score = 39 (18.8 bits), Expect = 9.9e-08, Sum P(5) = 9.9e-08
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS 637
GD + LNK +G++ ++GE ++ S
Sbjct: 857 GDVKRDMSLNKRRNTTNRGTTMKIKGETREYAS 889
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 131 (51.2 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENLCL-SGS-KSILFSQWTAFLDLLQIPLSRNNIP 767
G F+V++ + ESTKI+ LL ELE + SGS KS++ SQWT+ L ++ + L R
Sbjct: 977 GKSFKVELFDDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVALHLKRCGFT 1036
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ +DG++N +QR +++ F+
Sbjct: 1037 YATIDGSVNPKQRMDLVEAFN 1057
Score = 127 (49.8 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 494 KLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
KL + + G ++G + + + + ++LRRTK D G+P++VLP Q+ + +L+E E
Sbjct: 793 KLWKSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHRKFQLHHLKLSEDE 852
Query: 554 KDFYEALFKRSKVKFDQFVEQ 574
+ Y LF RS++ ++++
Sbjct: 853 ETVYSVLFARSRLALQYYLKR 873
Score = 90 (36.7 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQ 425
Q RGGILAD MGLGKT+ IAL+LT +
Sbjct: 591 QKPRGGILADDMGLGKTLTMIALILTQKK 619
Score = 65 (27.9 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLE 350
E P+ LK L P+QKQAL W++ E
Sbjct: 565 EDPAGLKISLLPHQKQALAWLLWRE 589
Score = 64 (27.6 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 457 KKEPKSLSIDKLIKQTNT-LINGGTLIICPMTLLGQWNKLIQK 498
K++ ++ ++ L K ++ + GTLIICP +L+ W ++K
Sbjct: 621 KEKDETTALTWLSKNDSSEFTSHGTLIICPASLIHHWKNEVEK 663
Score = 60 (26.2 bits), Expect = 5.1e-23, Sum P(6) = 5.1e-23
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGD 606
IL LLRLRQCC H L+ S D
Sbjct: 917 ILSQLLRLRQCCCHLSLLKSALD 939
Score = 37 (18.1 bits), Expect = 2.4e-20, Sum P(6) = 2.4e-20
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 446 YDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLI 496
YDI + +L+ KE + D+ I N + G + P+ L W +LI
Sbjct: 690 YDIVITTYSLLAKEIPTAKQDEQIPGANPSVEGTS---SPL-LRVVWARLI 736
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 187 (70.9 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
LRPYQ++A++WM+Q E R + LH W ++ L +Y N ++G E+P+
Sbjct: 309 LRPYQREAVNWMLQQEHFRSAPASENALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPN 366
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQ--S 452
GGILAD MGLGKTV +AL+LTH+++ Q A +G + Y I Q
Sbjct: 367 AGPQLLGGILADEMGLGKTVEVLALILTHTRQDVK---QDALTLPEGKVVNYFIPSQYSG 423
Query: 453 PNLMKKEPKSLSID 466
N+ E + + +
Sbjct: 424 ENVKNTETQHMEFE 437
Score = 147 (56.8 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
Identities = 45/153 (29%), Positives = 74/153 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDL- 704
CPIC + AVLT C H C EC+ +GS ++ C +CR+T S +++
Sbjct: 1437 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRSSIK--CAICRQTTSHKEIS 1493
Query: 705 --ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIP 760
T+ S+ + DI STK+ +++ L + L G+K+++FS W LD++
Sbjct: 1494 YVFTSEKASQ-EEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKA 1552
Query: 761 LSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
L+ NN+ F ++ Q+ L F D I
Sbjct: 1553 LTDNNMEFAQISRVKTFQEN---LSAFKHDPQI 1582
Score = 78 (32.5 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
Identities = 33/125 (26%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ +PY + + + L S + I+ R K + + +PP ++ + +
Sbjct: 881 WVRLLYRPYCKKNPQPL---YSFIAKILWRSAKKDVIDQ----IQIPPQTEEIHWLHFSP 933
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +A+ K K+ D ++ + SIL LLRLRQ C HP V
Sbjct: 934 VERHFYHRQHEVCCQDAVVKLRKIS-DWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 992
Query: 602 MSRGD 606
RG+
Sbjct: 993 --RGE 995
Score = 39 (18.8 bits), Expect = 6.1e-19, Sum P(3) = 6.1e-19
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 758
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 238 (88.8 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
Identities = 60/211 (28%), Positives = 111/211 (52%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + P+E + ++ +V +IL+P++LRRTK D++G+P++ LPP ++
Sbjct: 731 PWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVV 790
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ ++++ Y+ L +++V + +G +L Y++IL +LRLRQ C HP L+ S
Sbjct: 791 IKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGS 850
Query: 604 RGDT-QDYSDLNKLA-KRFLK-GSSNALEGEDKDVP-SRAYVQEVVEELQ------KGEQ 653
+ + +D S NKL ++ ++ S + E D S+ + +++ L+ K Q
Sbjct: 851 QDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQ 910
Query: 654 G-ECPICLEA---FEDAVLTPCAHRLCRECL 680
EC IC + A+ T C H C +CL
Sbjct: 911 SLECSICTTEPMDLDKALFTECGHSFCEKCL 941
Score = 150 (57.9 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 57/202 (28%), Positives = 95/202 (47%)
Query: 607 TQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEEL--QKGEQG-ECPICLEA- 662
T+ +L+ L + + N+ E+ D A +Q + + K Q EC IC
Sbjct: 866 TEQTVELDSLMRVVSERFDNSFSKEELD----AMIQRLKVKYPDNKSFQSLECSICTTEP 921
Query: 663 --FEDAVLTPCAHRLCRECLLGSWKTPTS---GL-CPVCRKTISRQDLITAPTGSRFQVD 716
+ A+ T C H C +CL + S GL CP CR I L+ + +
Sbjct: 922 MDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALVQTNSNSKN 981
Query: 717 IE-KNWV---ESTKIAVLLKELENL--CLSGSKSILFSQWTAFLDLLQIPL----SRNNI 766
+E K + +S+KI LLKEL+ L +G + ++FSQ++ +LD+L+ L S++
Sbjct: 982 LEFKPYSPASKSSKITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVA 1041
Query: 767 PFLRLDGTLNQQQREKVLKQFS 788
+ DG L+ ++R VL F+
Sbjct: 1042 KIYKFDGRLSLKERTSVLADFA 1063
Score = 100 (40.3 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 374 ERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
E + Y N SGE ++ P M +GGIL+D MGLGKTV +L+L+
Sbjct: 500 EDGIFFYANLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLVLS 548
Score = 64 (27.6 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 97 FVGWGDVPAMSTSKG-RKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIV 155
F+G V M+T R L+ G ++ +S +S+ S R R+ S +
Sbjct: 175 FIGALQVTGMATRPTVRPLKYGSQMKLK---RSSEEISATKVYDS--RGRKKASMASLVR 229
Query: 156 RFSTKDAGEIGRIPHEWSRCLLPLVRDKKV--EI-LGCCKSAPEVLGIMDTIVLSIRVYI 212
F + EIGR+ + ++ L PL+ ++ E+ L C + + L I D+ +L + ++
Sbjct: 230 IFDIQYDREIGRVSEDIAQILYPLLSSHEISFEVTLIFCDN--KRLSIGDSFILQLDCFL 287
Query: 213 NSSMFRKHH 221
S +F + +
Sbjct: 288 TSLIFEERN 296
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 186 (70.5 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 48/150 (32%), Positives = 77/150 (51%)
Query: 319 SSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELV 378
S +++ P L LRPYQ++A++WM+Q E + + LH W ++ L
Sbjct: 295 SIQVDVQHP--ALTPVLRPYQREAVNWMLQQEHFKSTPASENALHFLWR--EIVTSEGLK 350
Query: 379 VYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQP 438
+Y N ++G E+P+ GGILAD MGLGKTV +AL+LTH+++ Q A
Sbjct: 351 LYYNPYTGCIIREYPNAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVK---QDALTL 407
Query: 439 SDGGIEGYDISDQ--SPNLMKKEPKSLSID 466
+G + Y I N+ K E +++ +
Sbjct: 408 PEGEVVNYFIPSHYSGGNVKKTETQNMEFE 437
Score = 147 (56.8 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 45/154 (29%), Positives = 76/154 (49%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDL- 704
CPIC + AVLT C H C EC+ +GS ++ S C +CR+T S +++
Sbjct: 1437 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRS--SIRCAICRQTTSHKEIS 1493
Query: 705 --ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIP 760
T+ S+ + DI STK+ +++ L + L G+K+++FS W LD++
Sbjct: 1494 YVFTSEKASQ-EEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKA 1552
Query: 761 LSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
L+ NN+ F ++ Q+ K + NI+
Sbjct: 1553 LTDNNMEFAQISRVKTFQENLSAFK-YDPQINIL 1585
Score = 77 (32.2 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 33/125 (26%), Positives = 54/125 (43%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ +PY ++ + S + IM R K + + +PP + + +
Sbjct: 881 WVRLLYRPY---CKKNPHFLYSFIAKIMWRSAKKDVIDQ----IQIPPQTEETHWLHFSP 933
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +A+ K K+ D ++ + SIL LLRLRQ C HP V
Sbjct: 934 VERHFYHRQHEVCCQDAVVKLRKIS-DWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 992
Query: 602 MSRGD 606
RG+
Sbjct: 993 --RGE 995
Score = 48 (22.0 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 26/129 (20%), Positives = 54/129 (41%)
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
A + +I E A + + E L + K + + LH +++ELL HP
Sbjct: 1036 AGIHIIKGEYALAAELYREVLRSSEEHKEKLKTDSLQRLHATHNLMELLT-----AKHPG 1090
Query: 600 LVMSRGDTQDYSDLNKLAKRFL-KGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ + D + + +L + ++ K ++ E + +P VQ+ + +LQ+ P
Sbjct: 1091 IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALLP----VQQTIRDLQRKIHSNSPW 1146
Query: 659 CLEAFEDAV 667
L + A+
Sbjct: 1147 WLNVIQRAI 1155
Score = 39 (18.8 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 758
Score = 39 (18.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 303 EPISDSDVDNIVGVGYSSE-IEEMEPPSTLKCELRPYQK 340
EP+S D V +SSE +E++E K ++ YQK
Sbjct: 168 EPVSICDKGIQVESSFSSEMLEDLEWLQKKK-RIKLYQK 205
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 182 (69.1 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 38/103 (36%), Positives = 62/103 (60%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNA 383
+++ P+ + LRPYQ++A++WM+Q E R LH W ++ +L +Y N
Sbjct: 296 DVQHPALIPV-LRPYQREAVNWMLQQEHFRSAPTNENALHFLWR--EIVTPEDLKLYYNP 352
Query: 384 FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR 426
++G ++P+ GGILAD MGLGKTV +AL+LTH+++
Sbjct: 353 YTGCIIRDYPNAGPQLLGGILADEMGLGKTVEVLALILTHTRQ 395
Score = 147 (56.8 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 45/153 (29%), Positives = 74/153 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDL- 704
CPIC + AVLT C H C EC+ +GS ++ C +CR+T S +++
Sbjct: 1434 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRSSIK--CAICRQTTSHKEIS 1490
Query: 705 --ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIP 760
T+ S+ + DI STK+ +++ L + L G+K+++FS W LD++
Sbjct: 1491 YVFTSEKASQ-EEDIPVKGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKA 1549
Query: 761 LSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
L+ NN+ F ++ Q+ L F D I
Sbjct: 1550 LTDNNMEFAQISRVKTFQEN---LSAFKHDPQI 1579
Score = 78 (32.5 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 33/125 (26%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ +PY + + + L S + I+ R K + + +PP ++ + +
Sbjct: 878 WVRLLYRPYCKKNPQHL---YSFIAKILWRSAKKDVIDQ----IQIPPQTEEIHWLHFSP 930
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +A+ K K+ D ++ + SIL LLRLRQ C HP V
Sbjct: 931 VERHFYHRQHEVCCQDAVVKLRKIS-DWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 989
Query: 602 MSRGD 606
RG+
Sbjct: 990 --RGE 992
Score = 48 (22.0 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 27/129 (20%), Positives = 54/129 (41%)
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
A + +I E A + + E L + K + + LH +++ELL+ HP
Sbjct: 1033 AGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLV-----AKHPG 1087
Query: 600 LVMSRGDTQDYSDLNKLAKRFL-KGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ + D + + +L + ++ K ++ E + P VQ+ ++ELQ+ P
Sbjct: 1088 IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALQP----VQQTIKELQRKIYSNSPW 1143
Query: 659 CLEAFEDAV 667
L A+
Sbjct: 1144 WLNVIHRAI 1152
Score = 41 (19.5 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 213 NSSMFRKHHATSLKAGSNSAEDSVS 237
N S FRK TS K G ++S
Sbjct: 574 NRSKFRKKPVTSTKKGKGQPNINLS 598
Score = 41 (19.5 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 283 LLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQA 342
L++ N S+ + + + EPIS D V +S EI E K ++ YQK
Sbjct: 149 LIYVN-SECEDVEKQEKGLNEPISTCDKGIRVESSFSGEILEDLGWLQKKRRIKLYQKPE 207
Query: 343 LHWMVQL 349
+ M+++
Sbjct: 208 GNHMIKV 214
Score = 39 (18.8 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 720 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 755
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 185 (70.2 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 47/137 (34%), Positives = 76/137 (55%)
Query: 298 DVDDVEPISDS-DVDNI---VGVGYSSEIE----EMEPPSTLKCELRPYQKQALHWMVQL 349
D DD E + D+D + V + E + +++ P+ + LRPYQ++A++WM+Q
Sbjct: 260 DEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPALIPV-LRPYQREAVNWMLQQ 318
Query: 350 EKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
E R + LH W ++ L +Y N ++G E+P++ GGILAD MG
Sbjct: 319 ECFRSSPATESALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMG 376
Query: 410 LGKTVMTIALLLTHSQR 426
LGKTV +AL+LTH+++
Sbjct: 377 LGKTVEVLALILTHTRQ 393
Score = 147 (56.8 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 42/153 (27%), Positives = 74/153 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC+ +GS ++ C +CR+T S +++
Sbjct: 1432 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRSSIK--CAICRQTTSHKEIS 1488
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1489 YVFTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1548
Query: 762 SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
+ NN+ F ++ Q+ K+ + N ++
Sbjct: 1549 TDNNMEFAQISRVKTFQENLSAFKRDPQINILL 1581
Score = 74 (31.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 33/124 (26%), Positives = 54/124 (43%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ +PY + + + L S + I+ R K + + +PP ++ + +
Sbjct: 876 WVRLLYRPYCKKNPQHL---YSFIAKILWRSAKKDVIDQ----IQIPPQTEEIHWLHFSP 928
Query: 552 AEKDFY----EALFKRSKVKFDQFVEQGRILHNY-----ASILELLLRLRQCCDHPFLVM 602
E+ FY E + VK + + L + SIL LLRLRQ C HP V
Sbjct: 929 VERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV- 987
Query: 603 SRGD 606
RG+
Sbjct: 988 -RGE 990
Score = 49 (22.3 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 27/129 (20%), Positives = 53/129 (41%)
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
A + +I E A + + E L + K + + LH +++ELL+ HP
Sbjct: 1031 AGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLI-----ARHPG 1085
Query: 600 LVMSRGDTQDYSDLNKLAKRFL-KGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ + D + + +L + ++ K ++ E + P VQ+ + ELQ+ P
Sbjct: 1086 IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYP----VQQTIHELQRKIHSNSPW 1141
Query: 659 CLEAFEDAV 667
L A+
Sbjct: 1142 WLNVIHRAI 1150
Score = 40 (19.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 346 MVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN-AFSGEATIEF 392
M++ E+G D A TT W ER + L+ A S +EF
Sbjct: 1272 MIEDEEGLVDDRAPTTTRGLWAISET--ERSMKAILSFAKSHRFDVEF 1317
Score = 39 (18.8 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 753
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 185 (70.2 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 47/137 (34%), Positives = 76/137 (55%)
Query: 298 DVDDVEPISDS-DVDNI---VGVGYSSEIE----EMEPPSTLKCELRPYQKQALHWMVQL 349
D DD E + D+D + V + E + +++ P+ + LRPYQ++A++WM+Q
Sbjct: 260 DEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPALIPV-LRPYQREAVNWMLQQ 318
Query: 350 EKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
E R + LH W ++ L +Y N ++G E+P++ GGILAD MG
Sbjct: 319 ECFRSSPATESALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMG 376
Query: 410 LGKTVMTIALLLTHSQR 426
LGKTV +AL+LTH+++
Sbjct: 377 LGKTVEVLALILTHTRQ 393
Score = 147 (56.8 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 42/153 (27%), Positives = 74/153 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC+ +GS ++ C +CR+T S +++
Sbjct: 1436 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRSSIK--CAICRQTTSHKEIS 1492
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1493 YVFTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
Query: 762 SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
+ NN+ F ++ Q+ K+ + N ++
Sbjct: 1553 TDNNMEFAQISRVKTFQENLSAFKRDPQINILL 1585
Score = 74 (31.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 33/124 (26%), Positives = 54/124 (43%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ +PY + + + L S + I+ R K + + +PP ++ + +
Sbjct: 876 WVRLLYRPYCKKNPQHL---YSFIAKILWRSAKKDVIDQ----IQIPPQTEEIHWLHFSP 928
Query: 552 AEKDFY----EALFKRSKVKFDQFVEQGRILHNY-----ASILELLLRLRQCCDHPFLVM 602
E+ FY E + VK + + L + SIL LLRLRQ C HP V
Sbjct: 929 VERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV- 987
Query: 603 SRGD 606
RG+
Sbjct: 988 -RGE 990
Score = 50 (22.7 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 35/186 (18%), Positives = 74/186 (39%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP--ADM 542
P + G++ L QK +E+ + L + ++ + + R ++ A +
Sbjct: 984 PQAVRGEFLPL-QKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGI 1042
Query: 543 QVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602
+I E A + + E L + K + + LH +++ELL+ HP +
Sbjct: 1043 HIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLI-----ARHPGIPP 1097
Query: 603 SRGDTQDYSDLNKLAKRFL-KGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLE 661
+ D + + +L + ++ K ++ E + P VQ+ + ELQ+ P L
Sbjct: 1098 TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYP----VQQTIHELQRKIHSNSPWWLN 1153
Query: 662 AFEDAV 667
A+
Sbjct: 1154 VIHRAI 1159
Score = 40 (19.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 346 MVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN-AFSGEATIEF 392
M++ E+G D A TT W ER + L+ A S +EF
Sbjct: 1276 MIEDEEGLVDDRAPTTTRGLWAISET--ERSMKAILSFAKSHRFDVEF 1321
Score = 39 (18.8 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 753
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 187 (70.9 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 46/130 (35%), Positives = 71/130 (54%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNA 383
+++ P+ + LRPYQ++A++WM+Q E+ R A +LH W ++ L +Y N
Sbjct: 289 DVQHPALIPV-LRPYQREAVNWMLQQEQFRSAPPADNSLHFLWR--EIVTPDGLKLYYNP 345
Query: 384 FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGI 443
++G +FP GGILAD MGLGKTV +AL+LTH+++ Q A +G +
Sbjct: 346 YTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVK---QDALTLPEGKV 402
Query: 444 EGYDISDQSP 453
Y I P
Sbjct: 403 VNYFIPTHCP 412
Score = 140 (54.3 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 43/150 (28%), Positives = 73/150 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCREC---LLGSWKTPT--SGL-CPVCRKTISRQDLITA 707
CPIC + AVLT C H C EC ++ + + S + C +CR+T S +++
Sbjct: 1423 CPICARQLGKQWAVLT-CGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYV 1481
Query: 708 PTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSR 763
T + + DI STK+ +++ L + L G+K+++FS W LD++ L+
Sbjct: 1482 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTD 1541
Query: 764 NNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
NN+ F ++ Q+ L F D +I
Sbjct: 1542 NNMEFTQISRIKTFQEN---LSAFKYDPHI 1568
Score = 78 (32.5 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ PY + + + L S + IM R K + + +PP ++ + +
Sbjct: 867 WIRLLYHPYCKKNPQHL---YSFIAKIMWRSAKKDVIDQ----IQIPPQTEEMHWLHFSP 919
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +A+ K K+ D ++ + +SIL LLRLRQ C HP V
Sbjct: 920 VERHFYHRQHEVCCQDAIVKLRKIS-DWALKLSSLDRRTVSSILYPLLRLRQACCHPQAV 978
Query: 602 MSRGD 606
RG+
Sbjct: 979 --RGE 981
Score = 39 (18.8 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 709 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 744
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 179 (68.1 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 59/184 (32%), Positives = 92/184 (50%)
Query: 283 LLHANKSKVQSAKVNDV---DDVEPISD---SDVDNI---VGVGYSSEIE----EMEPPS 329
LL K+ S + DV D+ E S+ D+D + V + E + +++ P+
Sbjct: 234 LLKRVMGKLYSLSIPDVLEEDEEESESEPEGQDIDELYQFVKRTHQQEAKSVQVDVQHPA 293
Query: 330 TLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEAT 389
+ LRPYQ++A++WM+Q E+ R A +LH W ++ L +Y N ++G
Sbjct: 294 LIPV-LRPYQREAVNWMLQQEQFRSTP-ADNSLHFLWR--EIVTPDGLNLYYNPYTGCII 349
Query: 390 IEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDIS 449
+FP GGILAD MGLGKTV +AL+LTH+++ Q A +G + Y I
Sbjct: 350 RDFPHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVR---QDALTLPEGKVVNYFIP 406
Query: 450 DQSP 453
P
Sbjct: 407 THCP 410
Score = 141 (54.7 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 42/151 (27%), Positives = 73/151 (48%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCREC---LLGSWKTPT--SGL-CPVCRKTISRQDLITA 707
CPIC + AVLT C H C EC ++ + + S + C +CR+T S +++
Sbjct: 1450 CPICARQLGKQWAVLT-CGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYV 1508
Query: 708 PTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSR 763
T + + DI STK+ +++ L + L G+K+++FS W LD++ L+
Sbjct: 1509 FTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLKDPGAKALVFSTWQDVLDIISKALTD 1568
Query: 764 NNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794
NN+ F ++ Q+ K + NI+
Sbjct: 1569 NNMGFTQISRIKTFQENLSAFK-YDPQINIL 1598
Score = 77 (32.2 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W +L+ PY + + + L S + IM R K + + +PP ++ + +
Sbjct: 874 WIRLLYHPYCKKNPQHL---YSFIAKIMWRSAKKDVIDQ----IQIPPQTEEMHWLHFSP 926
Query: 552 AEKDFY---------EALFKRSKVKFDQFVEQGRI-LHNYASILELLLRLRQCCDHPFLV 601
E+ FY +A+ K K+ D ++ + +SIL LLRLRQ C HP V
Sbjct: 927 VERHFYHRQHEVCCQDAVVKLRKIS-DWALKLSSLDRRTVSSILYPLLRLRQACCHPQAV 985
Query: 602 MSRGD 606
RG+
Sbjct: 986 --RGE 988
Score = 42 (19.8 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 257 AEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAK---VNDVDDVEPIS-DSDVD 311
+E+ PSD+Y D D + A KS+ K + + +P++ DS V+
Sbjct: 540 SEYMPSDIYDDDNDNDDDDDDDPYYYYCKARKSRKLKKKPVLLTKKEKGQPVNLDSQVE 598
Score = 39 (18.8 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILK 516
TLII P ++ QW I + R L + Q + K
Sbjct: 716 TLIISPSSICHQWVDEINRHVRSSSLRVL-VYQGVKK 751
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 171 (65.3 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 48/149 (32%), Positives = 70/149 (46%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS--------RQDL-IT 706
C IC + EDA+ + C H CR C + CP C +S QD +T
Sbjct: 737 CCICDDTAEDAIKSQCKHEFCRACASSYVNSTPQPTCPRCHIVLSIDLEQPEIEQDQEMT 796
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRN 764
++ +E NW STK+ +L+ L+ L S KSI+FSQ+T L L++ L R
Sbjct: 797 KKNSIINRIRME-NWTSSTKMEMLVHSLQKLRSDNSSHKSIIFSQFTGMLQLIEWRLRRA 855
Query: 765 NIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
I + LDG++ QR + F NN+
Sbjct: 856 GITTVMLDGSMTPAQRAASIDHFM--NNV 882
Score = 134 (52.2 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 35/101 (34%), Positives = 57/101 (56%)
Query: 506 RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSK 565
R L+L+ S IMLRR K ++ + LP ++ + E EKD ++ ++
Sbjct: 635 RKLRLLTS---KIMLRRQK----KDHMDSMELPLKEIIIDRQFFGEVEKDLAGSIMHNNQ 687
Query: 566 VKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGD 606
KFD +V QG +L+NYA+I LL ++RQ DHP L++ + +
Sbjct: 688 RKFDTYVAQGVVLNNYANIFGLLSQMRQVADHPDLILKKNN 728
Score = 71 (30.1 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 400 RGGILADAMGLGKTVMTIALLLT 422
+GG+L D MGLGKT+ ++L+++
Sbjct: 403 KGGLLGDEMGLGKTIQAVSLVMS 425
Score = 54 (24.1 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEK 351
P+ + L+P+Q Q L WM +E+
Sbjct: 376 PTNISRNLKPFQLQGLAWMKAMEQ 399
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
+L++ P L QW IQ Y EG + + S K + TK+ + +G ++++
Sbjct: 433 SLVLAPPVALMQWMSEIQS-YTEGTLKTIVYHGSNAKT--KKMTKA--ELKGYDVIIMSY 487
Query: 540 ADMQVIYCE 548
+Q +Y +
Sbjct: 488 NSLQSMYAK 496
Score = 46 (21.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 519 MLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSK 565
M RRT+SS R G+ VL D+ ++ E A K KR +
Sbjct: 1 MTRRTRSSLARAGK---VLADDDVDIL-AEEASASKASLGGKLKRDR 43
Score = 41 (19.5 bits), Expect = 3.7e-21, Sum P(5) = 3.7e-21
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 56 KPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKLR 115
+P+ RRK++ + + SE+ + S+ E G GD P+ + ++R
Sbjct: 272 QPIPKRRKIVPRATLVLDSESESSAPPSEWTD--SDDDE----GLGDAPSETPRAVTRVR 325
Query: 116 RG 117
RG
Sbjct: 326 RG 327
Score = 41 (19.5 bits), Expect = 6.2e-17, Sum P(3) = 6.2e-17
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 87 EGYSEGSEWWFVGWGDVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKF 136
+ Y+EG+ V G S +K +K+ + + + + S+NSL S +
Sbjct: 450 QSYTEGTLKTIVYHG-----SNAKTKKMTKAELKGYDVIIMSYNSLQSMY 494
Score = 39 (18.8 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 238 LCHPLPNLFRLL-GITPFKKAEFTPSDLYTRKRPLDSKDGCGL 279
L +P+ R L G F+K S + R++ D D L
Sbjct: 617 LLNPIQTYGRTLKGAEAFRKLRLLTSKIMLRRQKKDHMDSMEL 659
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 140 (54.3 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
G+ F D+ + ESTK++ LL EL+ + C KS++ SQWT+ L ++ + L R +
Sbjct: 981 GTAFNTDLFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLK 1040
Query: 768 FLRLDGTLNQQQREKVLKQFSED 790
+ LDG++N +QR V+++F+ +
Sbjct: 1041 YSMLDGSVNPKQRMDVVEEFNNN 1063
Score = 109 (43.4 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W + ++G +R L +S+L LRRTK D G+P++ LP MQ+ +L+
Sbjct: 797 WKYQVDNNTKKGGDRLSLLTRSLL----LRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSA 852
Query: 552 AEKDFYEALFKRSKVKFDQFVEQ 574
E+ Y LF RS+ ++++
Sbjct: 853 EEQSVYNVLFARSRSTLQSYLKR 875
Score = 86 (35.3 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQ 425
GGILAD MGLGKT+ IAL+LT Q
Sbjct: 593 GGILADDMGLGKTLTMIALILTQKQ 617
Score = 75 (31.5 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 40/146 (27%), Positives = 65/146 (44%)
Query: 224 SLKAGSNSAEDSVSLC-HPLPNLFRLLG----ITPF-----KKAEFTPSDLYTRKRPLDS 273
+++ G NSA S C PLPN F G ITP K + S + L S
Sbjct: 450 TIEKGENSA--SGGRCGEPLPNSFSRPGGTKLITPLPLGDHKAGTSSSSHSHPSAAALGS 507
Query: 274 KD----GCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEM--EP 327
+ G G+++ + + ++ ++ V ISD+ ++++ S E+ E
Sbjct: 508 SEYFGHGFGMNSGVQNLYGGRMTEVRIRAVHSA--ISDA-INHLHKSLESCPTEQAVAED 564
Query: 328 PSTLKCELRPYQKQALHWMVQLEKGR 353
PS LK L +Q+QAL W++ E R
Sbjct: 565 PSGLKVPLLLHQRQALAWLLWRESQR 590
Score = 66 (28.3 bits), Expect = 2.7e-16, Sum P(5) = 2.7e-16
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 456 MKKEPKSLSIDK-LIKQTNTLING-GTLIICPMTLLGQWNKLIQKPYEEGDER 506
MK E S ++ L + +T+I TLIICP +L+ W K I + G R
Sbjct: 618 MKTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLR 670
Score = 62 (26.9 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 582 ASILELLLRLRQCCDH 597
A +L +LLRLRQCC H
Sbjct: 919 AHVLSMLLRLRQCCCH 934
Score = 45 (20.9 bits), Expect = 1.4e-17, Sum P(5) = 1.4e-17
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEP 327
+K++V+ + D V SDSD D +V V YSS E EP
Sbjct: 331 SKTQVRPSLEKPADGV---SDSDRDKVVLV-YSSS-NEGEP 366
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 141 (54.7 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 52/189 (27%), Positives = 94/189 (49%)
Query: 603 SRGDTQDYSDLNKLAKRFLK-GSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLE 661
SRG+ S N ++ L+ GS E D P R+ ++ +L + Q C + L
Sbjct: 875 SRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSP-RSSTVHILSQLLRLRQCCCHLSL- 932
Query: 662 AFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNW 721
+ A L P L E L+ S + S L + S + G+ F++++ +
Sbjct: 933 -LKSA-LDPM--ELKGEGLVLSLEEQLSALT-LSELRDSEPSSTVSLNGTFFKMELFEGM 987
Query: 722 VESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQ 779
ESTKI+ LL ELE + + + KS++ SQWT L ++ + L ++ + + +DG++N +Q
Sbjct: 988 RESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQ 1047
Query: 780 REKVLKQFS 788
R +++ F+
Sbjct: 1048 RMDLVEAFN 1056
Score = 122 (48.0 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G ++G + + + K ++LRRTK D GRP+++LP Q+ + +L+E E+ Y
Sbjct: 799 DNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
Query: 561 FKRSKVKFDQFVEQ 574
F RS+ ++++
Sbjct: 859 FARSRSALQSYLKR 872
Score = 86 (35.3 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQR 426
Q +GGILAD MGLGKT+ IAL+LT +
Sbjct: 587 QKPQGGILADDMGLGKTLTMIALILTQKNQ 616
Score = 68 (29.0 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 454 NLMKKEPK--SLSIDKLIKQTNT-LINGGTLIICPMTLLGQWNKLIQK 498
N KKE K S ++ L K + + GTLIICP +L+ W ++K
Sbjct: 615 NQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEK 662
Score = 61 (26.5 bits), Expect = 1.9e-12, Sum P(5) = 1.9e-12
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGDTQD 609
IL LLRLRQCC H L+ S D +
Sbjct: 916 ILSQLLRLRQCCCHLSLLKSALDPME 941
Score = 54 (24.1 bits), Expect = 1.7e-20, Sum P(5) = 1.7e-20
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLE 350
E P+ LK L +QKQAL W++ E
Sbjct: 561 EDPAGLKVPLLLHQKQALAWLLWRE 585
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 140 (54.3 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
G+ F D+ + ESTK++ LL EL+ + C KS++ SQWT+ L ++ + L R +
Sbjct: 964 GTAFNTDLFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLK 1023
Query: 768 FLRLDGTLNQQQREKVLKQFSED 790
+ LDG++N +QR V+++F+ +
Sbjct: 1024 YSMLDGSVNPKQRMDVVEEFNNN 1046
Score = 109 (43.4 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W + ++G +R L +S+L LRRTK D G+P++ LP MQ+ +L+
Sbjct: 780 WKYQVDNNTKKGGDRLSLLTRSLL----LRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSA 835
Query: 552 AEKDFYEALFKRSKVKFDQFVEQ 574
E+ Y LF RS+ ++++
Sbjct: 836 EEQSVYNVLFARSRSTLQSYLKR 858
Score = 86 (35.3 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQ 425
GGILAD MGLGKT+ IAL+LT Q
Sbjct: 576 GGILADDMGLGKTLTMIALILTQKQ 600
Score = 69 (29.3 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 40/129 (31%), Positives = 57/129 (44%)
Query: 228 GSNSAEDSVSLC-HPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHA 286
G NSA S C PLPN F G T TP L K S + G+ +L
Sbjct: 459 GENSA--SGGRCGEPLPNSFSRPGGTKL----ITPLPLGDHKAGTSSMNS-GVQ-NLYGG 510
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEM--EPPSTLKCELRPYQKQALH 344
++V+ V+ ISD+ ++++ S E+ E PS LK L +Q+QAL
Sbjct: 511 RMTEVRIRAVHSA-----ISDA-INHLHKSLESCPTEQAVAEDPSGLKVPLLLHQRQALA 564
Query: 345 WMVQLEKGR 353
W++ E R
Sbjct: 565 WLLWRESQR 573
Score = 66 (28.3 bits), Expect = 9.7e-16, Sum P(5) = 9.7e-16
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 456 MKKEPKSLSIDK-LIKQTNTLING-GTLIICPMTLLGQWNKLIQKPYEEGDER 506
MK E S ++ L + +T+I TLIICP +L+ W K I + G R
Sbjct: 601 MKTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLR 653
Score = 62 (26.9 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 582 ASILELLLRLRQCCDH 597
A +L +LLRLRQCC H
Sbjct: 902 AHVLSMLLRLRQCCCH 917
Score = 45 (20.9 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEP 327
+K++V+ + D V SDSD D +V V YSS E EP
Sbjct: 331 SKTQVRPSLEKPADGV---SDSDRDKVVLV-YSSS-NEGEP 366
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 119 (46.9 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 494 KLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+L + + G ++G + + + K ++LRRTK D G+P+++LP V +L+E E
Sbjct: 778 QLWKSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVMLPQRQFHVHRLKLSEDE 837
Query: 554 KDFYEALFKRSKVKFDQFVEQGR 576
++ Y L +S+ +++ GR
Sbjct: 838 ENVYSVLLAKSRSALQSYLKAGR 860
Score = 118 (46.6 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLC-LSGS-KSILFSQWTAFLDLLQIPLS 762
I + G RF+ ++ N S+KI+ LL ELE + SGS KS++ SQWT+ L ++ L
Sbjct: 959 IISLNGERFKAELFDNTRASSKISSLLVELEAIRGNSGSQKSVIVSQWTSMLQIVAWHLK 1018
Query: 763 RNNIPFLRLDGTLNQQQREKVLKQFSEDNN 792
+ + + ++G++ +QR +++ F+ +
Sbjct: 1019 KRGLTYATINGSVRPKQRMDLVEAFNSSRS 1048
Score = 89 (36.4 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQR 426
Q GGILAD MGLGKT+ IAL+LT R
Sbjct: 571 QKPHGGILADDMGLGKTLTMIALILTQKNR 600
Score = 71 (30.1 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 457 KKEPKSLSIDKLIKQ-TNTLINGGTLIICPMTLLGQWNKLIQK 498
K+E K++++ L K + + GTLIICP +L+ W + K
Sbjct: 604 KEEDKNVALTWLSKDDSREFTSRGTLIICPASLIHHWKNEVMK 646
Score = 57 (25.1 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGD 606
+L LLRLRQCC H L+ S D
Sbjct: 904 LLTRLLRLRQCCCHLSLLKSALD 926
Score = 54 (24.1 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLE 350
E P+ LK L +QKQAL W++ E
Sbjct: 545 EDPAGLKVPLLLHQKQALAWLLWRE 569
Score = 37 (18.1 bits), Expect = 5.3e-20, Sum P(7) = 5.3e-20
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVND 298
K+A+ P ++++ P+ SK G H S H+ + + K +D
Sbjct: 260 KEAKPLPRIIHSQN-PV-SKPQKGEHVSKEHSKSWEAREIKASD 301
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 434 SASQPSDGGIEGYDISDQSPNLMKKEPKSL 463
S S IE + + +S L +KE K L
Sbjct: 236 SGSLQVKSNIESHHVEKKSEPLREKEAKPL 265
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 140 (54.3 bits), Expect = 2.6e-19, Sum P(5) = 2.6e-19
Identities = 30/81 (37%), Positives = 56/81 (69%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENLCL-SGS-KSILFSQWTAFLDLLQIPLSRNNIP 767
G+ F+V++ + +STKI+ LL ELE + SGS KS++ SQWT+ L+++ + L R+ +
Sbjct: 961 GTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHRVT 1020
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ +DG++N +QR +++ F+
Sbjct: 1021 YATIDGSVNPKQRMDLVEAFN 1041
Score = 115 (45.5 bits), Expect = 2.6e-19, Sum P(5) = 2.6e-19
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G ++G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y L
Sbjct: 783 DNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVL 842
Query: 561 FKRSKVKFDQFVEQ 574
F RS+ ++++
Sbjct: 843 FARSRSDLQSYLKR 856
Score = 82 (33.9 bits), Expect = 2.6e-19, Sum P(5) = 2.6e-19
Identities = 35/130 (26%), Positives = 60/130 (46%)
Query: 304 PISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALH--WMVQLEKGRCLDEAATT 361
P+ D+ + +G + +E+ S +C P + LH W V E +DE +
Sbjct: 476 PLQGQDLQPLASLGLKAARQEIAGGSG-QCRGGPTSQDRLHSVWKVTSE---AIDELHRS 531
Query: 362 LHPCWEAYRLLDER---ELVVYLNAFSGEATIEFPSTLQMARGGIL--ADAMGLGKTVMT 416
L + + ++ ++ + L+ A + + + Q GGIL AD MGLGKT+
Sbjct: 532 LESRPDETAVAEDPAGLKVPLLLHQKQALAWLLWRES-QKPPGGILFPADDMGLGKTLTM 590
Query: 417 IALLLTHSQR 426
IAL+LT +
Sbjct: 591 IALILTQKNQ 600
Score = 62 (26.9 bits), Expect = 2.6e-19, Sum P(5) = 2.6e-19
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 457 KKEPKSLSIDKLIK-QTNTLINGGTLIICPMTLLGQWNKLIQK 498
K++ K+ S L K ++ + TLIICP +L+ W +QK
Sbjct: 604 KEKDKTTSSTWLSKTDSSEFTSHRTLIICPASLIHHWKNEVQK 646
Score = 60 (26.2 bits), Expect = 2.6e-19, Sum P(5) = 2.6e-19
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGD 606
IL LLRLRQCC H L+ S D
Sbjct: 901 ILSQLLRLRQCCCHLSLLKSALD 923
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 632 DKDVPSRAYVQE---VVEELQKGEQGE 655
+KD+ S V+E V+E Q+GE+ E
Sbjct: 178 EKDLSSGLVVKEKPSAVQEKQRGEKTE 204
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 140 (54.3 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 30/81 (37%), Positives = 56/81 (69%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENLCL-SGS-KSILFSQWTAFLDLLQIPLSRNNIP 767
G+ F+V++ + +STKI+ LL ELE + SGS KS++ SQWT+ L+++ + L R+ +
Sbjct: 983 GTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHRVT 1042
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ +DG++N +QR +++ F+
Sbjct: 1043 YATIDGSVNPKQRMDLVEAFN 1063
Score = 115 (45.5 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G ++G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y L
Sbjct: 805 DNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVL 864
Query: 561 FKRSKVKFDQFVEQ 574
F RS+ ++++
Sbjct: 865 FARSRSDLQSYLKR 878
Score = 82 (33.9 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 35/130 (26%), Positives = 60/130 (46%)
Query: 304 PISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALH--WMVQLEKGRCLDEAATT 361
P+ D+ + +G + +E+ S +C P + LH W V E +DE +
Sbjct: 498 PLQGQDLQPLASLGLKAARQEIAGGSG-QCRGGPTSQDRLHSVWKVTSE---AIDELHRS 553
Query: 362 LHPCWEAYRLLDER---ELVVYLNAFSGEATIEFPSTLQMARGGIL--ADAMGLGKTVMT 416
L + + ++ ++ + L+ A + + + Q GGIL AD MGLGKT+
Sbjct: 554 LESRPDETAVAEDPAGLKVPLLLHQKQALAWLLWRES-QKPPGGILFPADDMGLGKTLTM 612
Query: 417 IALLLTHSQR 426
IAL+LT +
Sbjct: 613 IALILTQKNQ 622
Score = 62 (26.9 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 457 KKEPKSLSIDKLIK-QTNTLINGGTLIICPMTLLGQWNKLIQK 498
K++ K+ S L K ++ + TLIICP +L+ W +QK
Sbjct: 626 KEKDKTTSSTWLSKTDSSEFTSHRTLIICPASLIHHWKNEVQK 668
Score = 60 (26.2 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGD 606
IL LLRLRQCC H L+ S D
Sbjct: 923 ILSQLLRLRQCCCHLSLLKSALD 945
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 632 DKDVPSRAYVQE---VVEELQKGEQGE 655
+KD+ S V+E V+E Q+GE+ E
Sbjct: 178 EKDLSSGLVVKEKPSAVQEKQRGEKTE 204
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 156 (60.0 bits), Expect = 3.3e-19, Sum P(4) = 3.3e-19
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM---SRG 605
L+ E DFYE+L+K SK FD +++ G +++NYA I LL+RLRQ DHP+LV G
Sbjct: 388 LSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYSSPSG 447
Query: 606 DTQDYSDLNKLAK 618
+ D NK K
Sbjct: 448 ANANLLDANKNEK 460
Score = 108 (43.1 bits), Expect = 3.3e-19, Sum P(4) = 3.3e-19
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 724 STKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
STKI L +E+ + +K+I+FSQ+T+FLDL+ L ++ + ++L G++++ ++
Sbjct: 506 STKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKD 565
Query: 782 KVLKQFSED 790
LK F E+
Sbjct: 566 AALKNFKEE 574
Score = 94 (38.1 bits), Expect = 3.3e-19, Sum P(4) = 3.3e-19
Identities = 41/147 (27%), Positives = 65/147 (44%)
Query: 280 HASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQ 339
H + + + S+ ++ K +V D + +V V + I P+ K R +Q
Sbjct: 45 HKNAILPSSSQDENLKEEEVPDDDDSVGGEVQGEVNA--NDYIPNPAAPANTK---RKWQ 99
Query: 340 KQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDER-ELVVYLNAFSGEATIEFPSTLQM 398
+ VQ+ + DE + E + LD L+ Y F ATI+ L
Sbjct: 100 --IMKEKVQMTEDDDFDEQNAVIAEAAE--QPLDLIIPLLKYQKEFLAWATIQ---ELSA 152
Query: 399 ARGGILADAMGLGKTVMTIALLLTHSQ 425
RGGILAD MG+GKT+ I+L+L +
Sbjct: 153 VRGGILADEMGMGKTIQAISLVLARRE 179
Score = 46 (21.3 bits), Expect = 3.3e-19, Sum P(4) = 3.3e-19
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 478 GGTLIICPMTLLGQWNKLIQKPYEEGDERGLK 509
G TL++ P L QW I + G R L+
Sbjct: 190 GHTLVLVPPVALSQWLDEISRLTSPGSTRVLQ 221
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 153 (58.9 bits), Expect = 4.0e-19, Sum P(5) = 4.0e-19
Identities = 58/194 (29%), Positives = 89/194 (45%)
Query: 500 YEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYE 558
Y+E D + +K +Q +LK I+LRRTK S +G PIL LP + Y L E +Y+
Sbjct: 651 YDEYDVKESMKKIQVLLKSILLRRTKDSLI-DGVPILNLPEKHVLSDYVTLENDELAYYQ 709
Query: 559 ALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV--------MSRGDTQDY 610
++ R + + + G N A L LLLRLRQ C H +LV + + +
Sbjct: 710 SIESRVQKAAKKIL--GEHTKN-APALTLLLRLRQACCHSYLVEIGEYRAKVKDSEAEAS 766
Query: 611 SDLNKLAKR-FLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAF--EDAV 667
+ +KL R L + N E + V S + + E CP+C + E ++
Sbjct: 767 ASNSKLDWRSMLNNARNLKESVKQQVHS--LIGSLNGEGNIENTPACPVCFDNIDIESSL 824
Query: 668 LT--PCAHRLCREC 679
L C H +C+ C
Sbjct: 825 LIFGECGHIICKGC 838
Score = 111 (44.1 bits), Expect = 4.0e-19, Sum P(5) = 4.0e-19
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 741 GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIM 794
G K I+FSQ+T+ DL+ + L +I FLR DGT++ + V+K+F + + N++
Sbjct: 944 GEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFYQSSKNVL 998
Score = 87 (35.7 bits), Expect = 4.0e-19, Sum P(5) = 4.0e-19
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 399 ARGGILADAMGLGKTVMTIALLL 421
A+GGILAD MGLGKT+ T+AL++
Sbjct: 444 AKGGILADDMGLGKTIQTLALMM 466
Score = 66 (28.3 bits), Expect = 4.0e-19, Sum P(5) = 4.0e-19
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 305 ISDSDVDNIV-GVGYSSEIEE-MEP-PSTLKCELRPYQKQALHWMVQLEKGR 353
+ +S++ +++ + ++EE +EP P LK L +Q+ L WM ++E +
Sbjct: 392 VDESEIKDLIDNIRPDEDLEEGLEPTPPELKVNLLKHQRMGLTWMKRMEASK 443
Score = 49 (22.3 bits), Expect = 2.4e-15, Sum P(5) = 2.4e-15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 463 LSIDKLIKQTNTLI---NGGTLIICPMTLLGQW 492
+ + K I QT L+ G LI+ P++LL QW
Sbjct: 453 MGLGKTI-QTLALMMVSKGSNLIVAPVSLLRQW 484
Score = 46 (21.3 bits), Expect = 2.5e-08, Sum P(5) = 2.5e-08
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 656 CPICLEAF--EDAVLT--PCAHRLCRECLLGSWKTPTSG-----------LCPVCRKTIS 700
CP+C + E ++L C H +C+ C ++ +G C C+KT+
Sbjct: 811 CPVCFDNIDIESSLLIFGECGHIICKGCCNTFFENCNAGDDDDESPHRIGECKDCQKTVK 870
Query: 701 RQDL 704
++
Sbjct: 871 EHNM 874
Score = 38 (18.4 bits), Expect = 4.0e-19, Sum P(5) = 4.0e-19
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 62 RKLIISKENEIRASSENGTLAEAIAEGYSEGS 93
R L++S+ + GTL++A+ + S G+
Sbjct: 281 RDLVVSQVAIEKFKKNIGTLSKALTQAVSLGN 312
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 222 (83.2 bits), Expect = 7.2e-19, Sum P(4) = 7.2e-19
Identities = 61/169 (36%), Positives = 89/169 (52%)
Query: 494 KLIQK-PYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
K IQK YE + K V S+LK IMLRRTK E L LPP ++V E
Sbjct: 487 KPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKL----ERADDLGLPPRVVEVRKDLFNEE 542
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM-SRGDTQDYS 611
E+D Y++L+ SK KF+ ++ +G +L+NYA+I +L+ R+RQ DHP LV+ S+ T D
Sbjct: 543 EEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVDIE 602
Query: 612 DLNKLAKRFL-KGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPIC 659
+ + + + + +A+E R V E + GE CP C
Sbjct: 603 NQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSC 651
Score = 160 (61.4 bits), Expect = 3.7e-12, Sum P(4) = 3.7e-12
Identities = 53/163 (32%), Positives = 76/163 (46%)
Query: 647 ELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL---CPVCRKTISRQD 703
+++ E C IC E +DA+ + C H CR C+ G CP C +S D
Sbjct: 600 DIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSI-D 658
Query: 704 LITAPTGSRFQVDIEKN-----------WVESTKIAVLLKELENLCLSGS--KSILFSQW 750
L +AP F + KN W STKI L++EL L KSI+FSQ+
Sbjct: 659 L-SAPALEDFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQF 717
Query: 751 TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
T+ LDL+ L + ++LDG + + R ++ FS D NI
Sbjct: 718 TSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINI 760
Score = 92 (37.4 bits), Expect = 7.2e-19, Sum P(4) = 7.2e-19
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 367 EAYRLLDERELVVYLNAFSGEATIEFPSTLQMA-RGGILADAMGLGKTVMTIALLLTHSQ 425
E ++ +ELV+ L F E + GGILAD MG+GKT+ TIALLL+
Sbjct: 241 EVKQIEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSEP- 299
Query: 426 RG 427
RG
Sbjct: 300 RG 301
Score = 62 (26.9 bits), Expect = 7.6e-16, Sum P(4) = 7.6e-16
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLE 350
E++++E P L L P+Q++ ++W+ + E
Sbjct: 241 EVKQIEQPKELVLNLLPFQREGVYWLKRQE 270
Score = 48 (22.0 bits), Expect = 7.2e-19, Sum P(4) = 7.2e-19
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 56 KPLAARRKLIISKENEIRASSENGTLAEAIAEGYSE-GSEWWFVGWGDVPAMSTSKGRKL 114
+PL+ +KLII N SS++ T +I++ + GS V S+++ R L
Sbjct: 58 EPLSTNKKLIIQSNN---TSSQHSTPPLSISDTSTHTGSSTDNVEANPNTGFSSARKRSL 114
Query: 115 RRGDEVTFTFPLKS 128
R + PL S
Sbjct: 115 RSSNLKKKFVPLSS 128
Score = 39 (18.8 bits), Expect = 7.2e-19, Sum P(4) = 7.2e-19
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 480 TLIICPMTLLGQWNKLI 496
TL++ P+ + QW + I
Sbjct: 304 TLVVAPVVAIMQWKEEI 320
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 139 (54.0 bits), Expect = 9.8e-19, Sum P(5) = 9.8e-19
Identities = 49/186 (26%), Positives = 91/186 (48%)
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFE 664
G + D + +++A+ F S D PS +V + L+ +C L +
Sbjct: 857 GRSPD-NPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLR-----QCCCHLSLLK 910
Query: 665 DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVES 724
A L P L E L+ S + S L + + +S + G+ F+ ++ + S
Sbjct: 911 SA-LDPT--ELESEGLVLSLEEQLSALT-LSKVDVSEPSPTVSLNGTCFKAELFDDTRRS 966
Query: 725 TKIAVLLKELENLCLS-GS-KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
TK++ LL ELE + GS KS++ SQWT+ L ++ + L +N + + +DG++N +QR
Sbjct: 967 TKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMD 1026
Query: 783 VLKQFS 788
+++ F+
Sbjct: 1027 LVEAFN 1032
Score = 107 (42.7 bits), Expect = 9.8e-19, Sum P(5) = 9.8e-19
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G +G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y+
Sbjct: 775 DNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIF 834
Query: 561 FKRSKVKFDQFV--EQGRILHN 580
RS+ ++ ++GR H+
Sbjct: 835 LARSRSALQSYLKRQEGRGSHH 856
Score = 85 (35.0 bits), Expect = 9.8e-19, Sum P(5) = 9.8e-19
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLT 422
Q +GGILAD MGLGKT+ IAL+LT
Sbjct: 563 QKPQGGILADDMGLGKTLTMIALILT 588
Score = 68 (29.0 bits), Expect = 9.8e-19, Sum P(5) = 9.8e-19
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 457 KKEPKSLSIDKLIKQTNTLI-NGGTLIICPMTLLGQWNKLIQK 498
K++ +S + L K +++ + GTLI+CP +L+ W ++K
Sbjct: 596 KEKERSEPVTWLSKNDSSVFTSSGTLIVCPASLIHHWKNEVEK 638
Score = 63 (27.2 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 33/122 (27%), Positives = 47/122 (38%)
Query: 495 LIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTD-REGRPILVLPPADMQVIYCELTEAE 553
L+++ ++ D G LV + L R K S D R I + Y + E
Sbjct: 793 LLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSYLKRQEGR 852
Query: 554 KDFY----EALFKRSKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSR 604
+ + F R +F V QG + +L LLRLRQCC H L+ S
Sbjct: 853 GSHHGRSPDNPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLRQCCCHLSLLKSA 912
Query: 605 GD 606
D
Sbjct: 913 LD 914
Score = 54 (24.1 bits), Expect = 9.8e-19, Sum P(5) = 9.8e-19
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLE 350
E P+ LK L +QKQAL W++ E
Sbjct: 537 EDPAGLKVPLLLHQKQALAWLLWRE 561
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 146 (56.5 bits), Expect = 4.1e-18, Sum P(4) = 4.1e-18
Identities = 62/214 (28%), Positives = 87/214 (40%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKL--VQSILKPIMLRRTKS------------S 526
L I P L W I +P G GL + +Q +LK M RRTK
Sbjct: 549 LRIKPYNDLANWKDQITRPLANG-RGGLAIERLQVVLKAFMKRRTKDVLKLNANLKPGEE 607
Query: 527 TDREGR-PILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASIL 585
D E + P + ++ + + EK+FYE L +R+ ++ + +I +YA L
Sbjct: 608 ADGEKKNPGFQIVKREVVKVAVDFMPGEKNFYERLEQRTDNSLEKMMGDSKI--DYAGAL 665
Query: 586 ELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVV 645
LLLRLRQCC+HP LV R D D+ SS+ + E DV VV
Sbjct: 666 TLLLRLRQCCNHPDLV--RSDLAKDKDVLLQTGTSNSQSSSKKQDELDDVADLFGALSVV 723
Query: 646 EELQKGEQGECPICLEAFEDAVLTPCAHRLCREC 679
+ +C IC T R C +C
Sbjct: 724 SK-------KCDICQMTLSQVESTGGGSR-CSDC 749
Score = 114 (45.2 bits), Expect = 4.1e-18, Sum P(4) = 4.1e-18
Identities = 40/105 (38%), Positives = 51/105 (48%)
Query: 398 MARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDI-SDQSPNLM 456
+ +GGILAD MGLGKTV IAL+LT+ + S Q A D E D S +S NL
Sbjct: 354 LPKGGILADDMGLGKTVQAIALMLTNQKPKDGSRRQPALSDHDRKPEDTDEESAESRNL- 412
Query: 457 KKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYE 501
PK LS TL++ P+ L+ QW I+ E
Sbjct: 413 ---PKGLS-------------KSTLVVAPLALIKQWESEIKTKVE 441
Score = 89 (36.4 bits), Expect = 4.1e-18, Sum P(4) = 4.1e-18
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 716 DIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL 775
D E + STKI L+K L K I+FS +T+ LD ++ LSR I + R DG++
Sbjct: 891 DDENQVLPSTKIRQLMKILRREA-PDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYDGSM 949
Query: 776 NQQQREKVLKQ 786
RE L++
Sbjct: 950 RNDLREASLEK 960
Score = 56 (24.8 bits), Expect = 4.1e-18, Sum P(4) = 4.1e-18
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 297 NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPST---LKCELRPYQKQALHWMVQLEKG 352
N+ D+ E + D + G + E+ + L+ +L P+Q+Q ++WM E G
Sbjct: 285 NETDEQE-VEDEKDGSDAGSETEEDSEDEDDDGVVEGLRVQLLPHQRQGVNWMCAKEIG 342
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 195 (73.7 bits), Expect = 4.3e-18, Sum P(5) = 4.3e-18
Identities = 52/157 (33%), Positives = 82/157 (52%)
Query: 507 GLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKV 566
G ++S+L +MLRRTK E L LPP +++ E EKD Y++L+ SK
Sbjct: 487 GFNNLRSLLDHVMLRRTKI----ERADDLGLPPRVVEIRRDFFNEEEKDLYQSLYSDSKR 542
Query: 567 KFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR-GDTQDYSDLNKLAKRFL--KG 623
KF+ +V +G +L+NYA+I L+ R+RQ DHP LV+ R G ++++ + L
Sbjct: 543 KFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGVIMCQLCDDE 602
Query: 624 SSNALEGEDKDVPSRAYVQEVVEELQKGEQG-ECPIC 659
+ +E + R +QE +E ECP+C
Sbjct: 603 AEEPIESKCHHRFCRMCIQEYMESFMGASNKLECPVC 639
Score = 139 (54.0 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
Identities = 50/190 (26%), Positives = 87/190 (45%)
Query: 609 DYSDLNKLAKRFLKGSSNALEGE-DKDVPSRAYVQEVVEELQ-KGEQGECPICLEAFEDA 666
D+ DL + KR SNA+ E D + + E E ++ K C +C++ + ++
Sbjct: 572 DHPDL--VLKRV---GSNAISNEIDGVIMCQLCDDEAEEPIESKCHHRFCRMCIQEYMES 626
Query: 667 VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA-PTGSRFQVDIEKNWVEST 725
+ C C +G V + ++ ++ +G+ W ST
Sbjct: 627 FMGASNKLECPVCHIGLSIDLEQPAIEVDEELFTKASIVNRIKSGAH-----GGEWRSST 681
Query: 726 KIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
KI L++EL L KSI+FSQ+T+ LDL+Q L R ++L G+++ QQR+
Sbjct: 682 KIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNT 741
Query: 784 LKQFSEDNNI 793
+K F E+ +
Sbjct: 742 IKHFMENTEV 751
Score = 80 (33.2 bits), Expect = 4.3e-18, Sum P(5) = 4.3e-18
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRG 427
GGILAD MG+GKT+ TI L + +G
Sbjct: 261 GGILADEMGMGKTIQTIGLFMHDRSKG 287
Score = 59 (25.8 bits), Expect = 4.3e-18, Sum P(5) = 4.3e-18
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKG 352
E E P + +L P+Q + L+W+++ E G
Sbjct: 228 ERAEHPPGMTIKLLPFQLEGLNWLIKQEDG 257
Score = 52 (23.4 bits), Expect = 4.3e-18, Sum P(5) = 4.3e-18
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 297 NDVDDVEPISDSDVDNIVG 315
NDV D E SDSD NI G
Sbjct: 6 NDVADNESSSDSDTSNIGG 24
Score = 48 (22.0 bits), Expect = 4.3e-18, Sum P(5) = 4.3e-18
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 478 GGTLIICPMTLLGQWNKLIQKPYEEG 503
G L+I P L QW I+K E G
Sbjct: 287 GPNLVIGPTVALMQWKNEIEKHTEPG 312
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 210 (79.0 bits), Expect = 4.5e-18, Sum P(4) = 4.5e-18
Identities = 59/169 (34%), Positives = 87/169 (51%)
Query: 494 KLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
K IQK EG +Q++LK IMLRRTK E L LPP + V E
Sbjct: 416 KNIQKFGVEGPGLESFNNIQTLLKNIMLRRTKV----ERADDLGLPPRIVTVRRDFFNEE 471
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSD 612
EKD Y +L+ SK K++ FVE+G +L+NYA+I L+ R+RQ DHP LV+ R + D
Sbjct: 472 EKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVLKRLNNFPGDD 531
Query: 613 LNKLAKRFLKGSSNA-LEGEDKDVPSRAYVQEVVEE-LQKGEQGECPIC 659
+ + + + +E + R ++E VE ++ + CP+C
Sbjct: 532 IGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVC 580
Score = 162 (62.1 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 48/153 (31%), Positives = 80/153 (52%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECL---LGSWKTPTSGL-CPVCRKTIS---RQDLITAP 708
C +C + E+ + + C H+ CR C+ + S+ + L CPVC +S Q +
Sbjct: 537 CQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPALEVD 596
Query: 709 TGS-RFQ-----VDIEKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIP 760
S + Q +++ W STKI L++EL L + KSI+FSQ+T+ LDL++
Sbjct: 597 LDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWR 656
Query: 761 LSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
L R ++L G+++ QR++ +K F NNI
Sbjct: 657 LKRAGFQTVKLQGSMSPTQRDETIKYFM--NNI 687
Score = 83 (34.3 bits), Expect = 4.5e-18, Sum P(4) = 4.5e-18
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
GG+LAD MG+GKT+ TIALL+
Sbjct: 205 GGVLADEMGMGKTIQTIALLM 225
Score = 56 (24.8 bits), Expect = 4.5e-18, Sum P(4) = 4.5e-18
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEK 351
+ + P + +L P+Q + LHW++ E+
Sbjct: 172 QRSKQPDGMTIKLLPFQLEGLHWLISQEE 200
Score = 44 (20.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 244 NLFRLLGITPFKKAEFTPSDLYTRKRPLDSK---DGCGLHASLLHAN 287
+L R L I PF K T D ++ + D C H + H N
Sbjct: 363 SLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCS-HVIMQHTN 408
Score = 43 (20.2 bits), Expect = 4.5e-18, Sum P(4) = 4.5e-18
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 473 NTLINGGTLIICPMTLLGQWNKLIQK 498
N L +L++ P L QW I++
Sbjct: 226 NDLTKSPSLVVAPTVALMQWKNEIEQ 251
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 126 (49.4 bits), Expect = 2.6e-17, Sum P(5) = 2.6e-17
Identities = 37/101 (36%), Positives = 56/101 (55%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
++ RGGILAD MGLGKT+ I+ +L ++ + S+G E D SD +
Sbjct: 456 KLPRGGILADDMGLGKTLTMISSVLA---------CKNGQEMSEGKDESSD-SDSEDDKN 505
Query: 457 KKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQ 497
KK KS++ K + +T GGTL++CP +LL QW ++
Sbjct: 506 KKR-KSVTGWKSKGRKDTR-RGGTLVVCPASLLRQWESEVE 544
Score = 120 (47.3 bits), Expect = 2.6e-17, Sum P(5) = 2.6e-17
Identities = 25/71 (35%), Positives = 48/71 (67%)
Query: 724 STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S+KI ++++ L+ L S K+I+ SQWT+ LD+L+ LS++ + L L+GT+ + R+
Sbjct: 889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQ 948
Query: 782 KVLKQFSEDNN 792
++ +F++ NN
Sbjct: 949 DIVNEFNDRNN 959
Score = 102 (41.0 bits), Expect = 2.6e-17, Sum P(5) = 2.6e-17
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P L W K I G R L L ++K +MLRRTK+ +G+ + LP ++++
Sbjct: 653 PFDDLHTWKKWIDNKSAGGQNR-LNL---LMKSLMLRRTKAQLQSDGK-LNSLPNKELRL 707
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQ 574
I L + E + Y+ + S+ F QF+ Q
Sbjct: 708 IEISLDKEEMNVYQTVMTYSRTLFAQFLHQ 737
Score = 65 (27.9 bits), Expect = 1.2e-13, Sum P(5) = 1.2e-13
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQD 609
KD A +K + KF + + + ++ IL LLLRLRQ C HP L+ + D ++
Sbjct: 760 KDPNGAYYKMHE-KFARMAGSKKEVKSH-DILVLLLRLRQICCHPGLIDAMLDGEE 813
Score = 51 (23.0 bits), Expect = 2.6e-17, Sum P(5) = 2.6e-17
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 326 EPPSTLKCELRPYQKQALHWMVQLEK 351
E P LK L +QK AL WM E+
Sbjct: 430 EDPVGLKVSLMNHQKHALAWMSWRER 455
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 263 DLYTRKRPLDSKDGCG-------LHASLLHANKSKVQS-AKVNDVDDVE 303
DL+T K+ +D+K G + + +L K+++QS K+N + + E
Sbjct: 656 DLHTWKKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKE 704
Score = 39 (18.8 bits), Expect = 2.6e-17, Sum P(5) = 2.6e-17
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEME 326
N Q ++ ++ D V P + + +G+ SE EE E
Sbjct: 77 NSQNSQESEDSEDDSVRPSARNTKRKPLGIPSDSEDEEDE 116
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 376 ELVV--YLNAFSGEATIEFPSTLQMARGGILADAMG 409
E VV Y F+G + ST+ A +L D+ G
Sbjct: 162 EAVVPRYTTQFAGNIQNDLHSTIGAADSEVLDDSSG 197
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 142 (55.0 bits), Expect = 6.5e-17, Sum P(5) = 6.5e-17
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCW-EAYRLLDERELVVYLNAFSGEAT 389
L EL P+Q + L WM + E+ + L + L P W L D+R +VY+N G T
Sbjct: 214 LSSELLPFQMRVLEWMKRREEEKFL--TSNDLPPLWYHCKSLFDDR--MVYVNHVYGYMT 269
Query: 390 IEFPSTLQMA----RGGILADAMGLGKTVMTIALLLTH 423
T +A RGGILAD MG+GKT+ + L+L H
Sbjct: 270 FSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHH 307
Score = 88 (36.0 bits), Expect = 6.5e-17, Sum P(5) = 6.5e-17
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 638 RAYVQEVVEELQ-KGEQGE-CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695
R Y+ + E + K E + C IC + + +T C H C CL +W +S CP+C
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCL-EAWLKHSSS-CPMC 1129
Query: 696 RKTISRQD 703
+ +++ +
Sbjct: 1130 KTKLNKNN 1137
Score = 84 (34.6 bits), Expect = 6.5e-17, Sum P(5) = 6.5e-17
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
K ++FSQW LD+L N I F+R DG + + LK+F E+ ++
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDG----KSKNTCLKRFKEERSL 1252
Score = 73 (30.8 bits), Expect = 6.5e-17, Sum P(5) = 6.5e-17
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 518 IMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRI 577
++ R +K + E L LPP + L+ E+ Y+ L + F ++
Sbjct: 505 LVCRHSKQDVEEE----LKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHFFKDRNLD 560
Query: 578 LHNYASILELLLRLRQCCDHP 598
L + S+ L+RLRQ C HP
Sbjct: 561 LCDEESMRRWLVRLRQACCHP 581
Score = 52 (23.4 bits), Expect = 6.5e-17, Sum P(5) = 6.5e-17
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQW 492
+ D+++ + N + TLII P T+L QW
Sbjct: 318 TFDQVVGK-NVKYSKATLIITPSTILDQW 345
Score = 47 (21.6 bits), Expect = 7.1e-13, Sum P(5) = 7.1e-13
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 699 ISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWT 751
+SR L+ A S + KN E +I + KE +C K + Q T
Sbjct: 911 VSR--LLDASNRSTSSFETSKNMEEYERIDAMAKEQSRICQKLEKELSIIQLT 961
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 128 (50.1 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 43/159 (27%), Positives = 75/159 (47%)
Query: 488 LLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547
L+ + + QK EE +L Q +L+P +LRR K +++ +P ++YC
Sbjct: 1039 LIDENERTTQKMDEETRNTVARLHQ-VLRPYLLRRLKKDVEKQ------MPGKYEHIVYC 1091
Query: 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL------- 600
L++ ++ Y+ R+K K + + G N+ SI+ L++LR+ C+HP L
Sbjct: 1092 RLSKRQRFLYDDFMSRAKTK--ETLASG----NFLSIINCLMQLRKVCNHPDLFEVRPIV 1145
Query: 601 ---VMSRGDTQDYSDLNKLAKR-FLKGSSNALEGEDKDV 635
M R Y N+L KR F K + + + + DV
Sbjct: 1146 TSFAMPRSIPSYYQSTNELVKRQFNKDETVSFQALNLDV 1184
Score = 99 (39.9 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+A LL+EL + G ++++F+Q T LD+L+ L+ + ++RLDG + R+ + +
Sbjct: 1370 KLATLLQELTS---QGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTE 1426
Query: 786 QFSEDNNI 793
+F+ D I
Sbjct: 1427 KFNRDPKI 1434
Score = 97 (39.2 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 272 DSKDGCGLHASLLHANKSKVQSA----KVNDVDDVEPISDSDVDNI-VGVGYSSEIEEME 326
D +D + ++ + + + S+ +VN ++ I+ +D D+ V + S+++++
Sbjct: 755 DEEDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKDVP 814
Query: 327 PPSTLKCELRPYQKQALHWMVQL 349
PS L+ LRPYQKQ L+W+ L
Sbjct: 815 IPSLLRGTLRPYQKQGLNWLASL 837
Score = 75 (31.5 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 844 GILADEMGLGKTIQTISLL 862
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 171 (65.3 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 65/214 (30%), Positives = 105/214 (49%)
Query: 491 QWNKLIQKPYEEGDERG-LKLVQSILKPIMLRRTKSSTDR-EGRPILVLPPADMQVIYCE 548
Q NK Q Y+ D + L+ V+ +L IMLRR+K+ D+ +G+P+L LPP ++V
Sbjct: 1174 QRNKQYQ--YDNEDRKNALRKVRVLLNAIMLRRSKA--DKIDGKPLLELPPKIVEVDESR 1229
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ 608
L E FY AL +++ + + +Y+S+L LLLRLRQ C H LV+ G+ +
Sbjct: 1230 LKGEELKFYTALESKNQALAKKLLNNST-RGSYSSVLTLLLRLRQACCHSELVVM-GEKK 1287
Query: 609 DYSDLNKLAK-RFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFED-- 665
++ K+A + + L + + A Q V+ + C C+E E
Sbjct: 1288 --AEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQ-VITSMNSMT---CFWCMEQLEPEA 1341
Query: 666 -AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698
+VLT C H +C C+ + S + P +KT
Sbjct: 1342 MSVLTGCGHLICDTCIEPFIEE--SSMLPQAKKT 1373
Score = 98 (39.6 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 724 STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRN-NIPFLRLDGTLNQQQR 780
STKI ++ ++ + + K I+FSQ+T F ++L+ L N P+L+ G++N Q+R
Sbjct: 1442 STKIEQCIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRR 1501
Query: 781 EKVLKQFSED 790
V+ +F D
Sbjct: 1502 SDVINEFYRD 1511
Score = 81 (33.6 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 400 RGGILADAMGLGKTVMTIALLLTH 423
+GG+LAD MGLGKT+ IAL+L +
Sbjct: 963 KGGLLADDMGLGKTIQAIALMLAN 986
Score = 51 (23.0 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 328 PSTLKCELRPYQKQALHWMVQLE 350
P + L +Q+ LHW++Q+E
Sbjct: 936 PEDMTVNLLKHQRLGLHWLLQVE 958
Score = 42 (19.8 bits), Expect = 0.00095, Sum P(5) = 0.00095
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 616 LAKRFLKGSSNALEGEDKDVPSRAYVQ 642
LA F K L+GE +P+ ++Q
Sbjct: 1054 LANEFKKHWPKKLDGEQNQLPAVPHIQ 1080
Score = 37 (18.1 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 188 LGCCKSAPEVL 198
L CCK+ E+L
Sbjct: 495 LSCCKTNSEIL 505
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 110 (43.8 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 21/81 (25%), Positives = 46/81 (56%)
Query: 494 KLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
KL + + G +RG + + + + ++LRRTK D G+P++ LP ++ +L+E E
Sbjct: 776 KLWKAQVDNGSKRGGERLNILTRALLLRRTKDQLDATGKPLVSLPDRTCEIHRLKLSEDE 835
Query: 554 KDFYEALFKRSKVKFDQFVEQ 574
+ Y+ +F +S+ ++++
Sbjct: 836 QAVYDVVFAQSRSTLQNYLKR 856
Score = 110 (43.8 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 710 GSRFQVDIEKNWVESTKIAVLLKELENLCLSGS--KS-ILFSQWTAFLDLLQIPLSRNNI 766
GS F ++ ++ ESTKI+ +L E + + + KS ++ SQWT+ L ++ + L + +
Sbjct: 961 GSHFSSELFQDTRESTKISSILTESDFIHSDRNCQKSFVIVSQWTSMLKIVAVHLEKMGL 1020
Query: 767 PFLRLDGTLNQQQREKVLKQFS 788
F +DGT+N ++R ++++F+
Sbjct: 1021 KFAVIDGTVNPKRRMDLVEEFN 1042
Score = 80 (33.2 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQR 426
GGILAD MGLGKT+ IAL+L+ ++
Sbjct: 581 GGILADDMGLGKTLTMIALILSQKKK 606
Score = 70 (29.7 bits), Expect = 5.9e-13, Sum P(4) = 5.9e-13
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 420 LLTHSQRGGLSGIQSASQPSDGGIEGYDIS-----DQSPNLMKKEPKSLSIDKLI-KQTN 473
LL H +R + +Q GGI D+ ++ ++ K +++ I K +
Sbjct: 560 LLPHQKRALTWLLWRETQKPCGGILADDMGLGKTLTMIALILSQKKKDEKLEEWISKHGS 619
Query: 474 TLI-NGGTLIICPMTLLGQWNKLIQK 498
+++ + GTLIICP +L+ W K I K
Sbjct: 620 SIVASQGTLIICPASLVHHWKKEIDK 645
Score = 66 (28.3 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGDTQDYSDL 613
IL LLLRLRQCC H L+ T D S+L
Sbjct: 901 ILSLLLRLRQCCCHLSLLKK---TLDQSEL 927
Score = 66 (28.3 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLE 350
+E E P LK EL P+QK+AL W++ E
Sbjct: 545 TENTEAHDPKGLKVELLPHQKRALTWLLWRE 575
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 188 (71.2 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 89/334 (26%), Positives = 139/334 (41%)
Query: 481 LIICPMTLLGQWNKLIQKPYEE--GD--ERGLKLVQSILKPIMLRRTKSSTDREGRPILV 536
L I P + + K I +P + D E LK ++ +L + RRTK T PI+
Sbjct: 443 LRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKE-TRVNNLPIVN 501
Query: 537 LPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCD 596
LPP ++ + L E+ Y ++ D + L Y +L LLRLRQ C
Sbjct: 502 LPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCC 561
Query: 597 HPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGEC 656
HP+LV S + D N R + NA + D P +E + + C
Sbjct: 562 HPWLVKS--SSLD----NSFRIRDSENVRNACKSLD---PL------TIERIATLQDFNC 606
Query: 657 PICLE-AFEDAVLTPCAHRLCRECL-------LGSWKTPTS-GLCPVCRKTISRQDLITA 707
+CL+ + PC H C+EC+ GS T T CP+CR I + L+ A
Sbjct: 607 SVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDA 666
Query: 708 --------PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSI--LFSQWTAFLDLL 757
P S Q++++ N S + ++ L+ + +K S+W + L
Sbjct: 667 TILQAIHGPLNSLKQLELDMNQSFSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLN 726
Query: 758 QIPLSRNNIPFLRLDGTLNQQQREKVL--KQFSE 789
Q +R I LD + ++ EK+L QFS+
Sbjct: 727 Q---ARQTI----LD-IIGSKRNEKILVYSQFSQ 752
Score = 97 (39.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 721 WVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQ 778
W S+K+ + + ++ S K +++SQ++ +L L+ L NI +R DGT++
Sbjct: 719 WKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSAN 778
Query: 779 QREKVLKQFSEDNNIM 794
QR+K L F+ D +++
Sbjct: 779 QRQKSLHSFNNDKDVL 794
Score = 92 (37.4 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 386 GEATIEFPSTLQMAR-GGILADAMGLGKTVMTIALLLTHSQRGGL 429
G A +E S Q ++ GG++AD MGLGKT+ TIALLLT + L
Sbjct: 257 GHAWME--SMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPL 299
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 131 (51.2 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 489 LGQWNKLIQKPYEEG-DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547
LGQ+ + P E+ DE ++ VQ + P +LRRTK ++ L LP Q YC
Sbjct: 631 LGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTK----KDQTVALNLPDKQEQKAYC 686
Query: 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
LT + YE L + + Q VE + IL +L +L+Q C+HP L + +
Sbjct: 687 PLTGEQASLYEQLVQDTL----QNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEP 742
Query: 608 QD 609
+D
Sbjct: 743 KD 744
Score = 85 (35.0 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 268 KRPLDSKDGCGLHASLLHANKSKVQSAKVNDVD-DVEPISDSDVDNIVGVGYSSEIEEME 326
K L+ KD H S + + + ND++ +++ + ++ +G +I +++
Sbjct: 386 KYGLEMKDVLQQHLSNTAETEIVEEDSPFNDIEIELDGYYEELFQKLLHIG---DIPKVD 442
Query: 327 PPSTLKCELRPYQKQALHWMVQLEK 351
PS+L LRPYQ+ + W++ L K
Sbjct: 443 VPSSLHATLRPYQQHGIEWLLYLRK 467
Score = 70 (29.7 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 18/71 (25%), Positives = 43/71 (60%)
Query: 719 KNWVE-STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN-NIPFLRLDGTLN 776
K+ +E S K + L++ +EN+ ++F+Q+ ++L+ L + L L+G++
Sbjct: 743 KDIIERSMKTSTLMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVP 802
Query: 777 QQQREKVLKQF 787
+++R+K+++QF
Sbjct: 803 KKERDKMIEQF 813
Score = 66 (28.3 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
G +LAD MGLGK++ TI LL
Sbjct: 471 GALLADDMGLGKSIQTITYLL 491
Score = 59 (25.8 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 469 IKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
IK+ N L G LI+ P ++LG W K ++
Sbjct: 493 IKENN-LQTGPALIVAPTSVLGNWQKEFER 521
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 101 (40.6 bits), Expect = 6.2e-15, Sum P(5) = 6.2e-15
Identities = 32/99 (32%), Positives = 49/99 (49%)
Query: 489 LGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCE 548
L QW K + + G + + I+KP+MLRRTK G + LP +++I +
Sbjct: 506 LQQWKKNLNESM-----LGHRRLNFIIKPLMLRRTKQKLQASG-DMPALPSLKIELICVQ 559
Query: 549 LTEAEKDFYEALFKRSKVKFDQFV---EQGRILHNYASI 584
L++ E Y+ L SK F QF+ E+G NY S+
Sbjct: 560 LSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSL 598
Score = 95 (38.5 bits), Expect = 6.2e-15, Sum P(5) = 6.2e-15
Identities = 45/165 (27%), Positives = 72/165 (43%)
Query: 272 DSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSE-IEEMEPP-- 328
++K+ C L LH K + + + D + + + + + +SE ++ E P
Sbjct: 96 ETKELCDLK---LHLEKLNARLEALGEFLDTLRLREDQQE--IKIEDNSELVDHTEQPKW 150
Query: 329 STLKCELRPYQKQALHWMVQL--EKGRCLDEAATTLHPCWEAYRLLD-ERE---LVVYLN 382
S L L Y+++A H Q K +D T P + D E++ L+V L
Sbjct: 151 SNLYSGLNRYRQKANHTAAQFYQHKSNIIDSLKTLYEPIQPRPAIDDLEKQPALLLVRLL 210
Query: 383 AFSGEAT--IEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQ 425
++F Q GGILAD MGLGKT+ IAL+L +
Sbjct: 211 KHQQSCLKWMQFRER-QKISGGILADDMGLGKTLSMIALILASEE 254
Score = 88 (36.0 bits), Expect = 6.2e-15, Sum P(5) = 6.2e-15
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 724 STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ +++ +LE L L+G+ K I+ SQW ++L +++ L + L +G L ++RE
Sbjct: 769 SAKLKMVIDKLEEL-LTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKERE 827
Query: 782 KVLKQFSEDN 791
VL+ F+ +N
Sbjct: 828 IVLRDFNANN 837
Score = 67 (28.6 bits), Expect = 6.2e-15, Sum P(5) = 6.2e-15
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 439 SDGGIEGYDISDQSPNLMKK--EPKSLSIDKLIKQTNTLING-----GTLIICPMTLLGQ 491
+D G + + D+ +L+ K EP+ S D+ + L NG TL++CPM+++ Q
Sbjct: 328 NDAGDKAV-VEDEQKDLLAKTPEPEVFSSDE---EEEHLSNGRYPSANTLVVCPMSVMCQ 383
Query: 492 W 492
W
Sbjct: 384 W 384
Score = 62 (26.9 bits), Expect = 6.2e-15, Sum P(5) = 6.2e-15
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 576 RILHNYASILELLLRLRQCCDHPFLV--MSRG 605
+IL Y IL LLLRLRQ C HP L+ M RG
Sbjct: 632 KILGIY--ILVLLLRLRQFCCHPGLMIGMLRG 661
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 167 (63.8 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 53/201 (26%), Positives = 104/201 (51%)
Query: 444 EGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPM-TLLG--QWNKLIQKPY 500
E + + ++S L E +S S D L+ T T + T + + L Q++ L Q
Sbjct: 655 EAHRLKNKSCKLTI-ELRSYSFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFSNLDQFLL 713
Query: 501 EEGDERG---LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD + ++ +Q+ILKP +LRR K ++ + P + ++ ELT +K +Y
Sbjct: 714 EYGDLKESSQVESLQAILKPYLLRRMKERVEKS------IAPKEETIVEVELTTVQKKYY 767
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV--MSRGDTQDYSDLNK 615
A+++++ F F+ +G + S+L +++ LR+CC+HP+L + + +T D ++
Sbjct: 768 RAIYEKN---FS-FLRKGGKSNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQ 823
Query: 616 LAKRFLKGSSNALEGEDKDVP 636
+ ++ ++ S L DK +P
Sbjct: 824 IFQKLIQASGK-LVLIDKLLP 843
Score = 93 (37.8 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ ++ K L L L K ++FSQ + LD+L L+ P R+DG++ R+
Sbjct: 832 SGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAA 891
Query: 784 LKQFSEDNN 792
+ +FS+ ++
Sbjct: 892 IDRFSKPDS 900
Score = 71 (30.1 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 400 RGGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
R IL D MGLGKTV ++++L T + G+ G
Sbjct: 528 RNSILGDEMGLGKTVQSVSILETLRKVHGIRG 559
Score = 47 (21.6 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 334 ELRPYQKQALHWM 346
+LRPYQ + L+W+
Sbjct: 508 KLRPYQLEGLNWL 520
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 114 (45.2 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 39/157 (24%), Positives = 75/157 (47%)
Query: 493 NKLIQKPYEEGDERGLKL----VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCE 548
+K+I+ G ++ K + +L+P +LRR K+ +++ +P ++YC+
Sbjct: 899 DKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADVEKQ------MPAKYEHIVYCK 952
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL-------- 600
L++ ++ Y+ R++ K + G N+ SI+ L++LR+ C+HP L
Sbjct: 953 LSKRQRFLYDDFMSRAQTKAT--LASG----NFMSIVNCLMQLRKVCNHPNLFEVRPILT 1006
Query: 601 --VMSRGDTQDYSDLNK-LAKRFLKGSSNALEGEDKD 634
V+ DY D+ + L K F K +N + D D
Sbjct: 1007 SFVLEHCVASDYKDVERTLLKLFKK--NNQVNRVDLD 1041
Score = 104 (41.7 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 27/89 (30%), Positives = 52/89 (58%)
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN 764
I P S Q D K K+A+LL++L++ +G ++++F+Q T LD+L+ L+ +
Sbjct: 1233 IAFPDKSLLQYDCGK----LQKLAILLQQLKD---NGHRALIFTQMTKVLDVLEQFLNYH 1285
Query: 765 NIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
++RLDG + R+ + ++F+ D+ I
Sbjct: 1286 GYLYMRLDGATKIEDRQILTERFNTDSRI 1314
Score = 75 (31.5 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 717 GILADEMGLGKTIQTISLL 735
Score = 74 (31.1 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 292 QSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
Q+ +D+ DVE +++ V + ++ PS L+ LR YQKQ L+W+ L
Sbjct: 658 QNENRDDIKDVEEDAETKVQE-----EQLSVVDVPVPSLLRGNLRTYQKQGLNWLASL 710
Score = 51 (23.0 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 279 LHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEME 326
L A L N S +D +DV SD D+D+ + S E EE++
Sbjct: 459 LEAQLNQVNDDGRSSTPSSDSNDVLSESDDDMDDELSTS-SDEDEEVD 505
Score = 50 (22.7 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 428 GLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLI 482
GLS + + SDG ++ D D + N E + L D++ T G +
Sbjct: 601 GLSALFGKGEESDGDLDLDDSEDFTVNSSSVEGEELEKDQVDNSAATFERAGDFV 655
Score = 41 (19.5 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 271 LDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSS 320
LD + +S++ +S + S+ N+ + E +SD D VG S+
Sbjct: 557 LDKHESSSSESSVMTGEESSIYSSSENESQN-ENDRESD-DKTPSVGLSA 604
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 111 (44.1 bits), Expect = 3.1e-13, Sum P(5) = 3.1e-13
Identities = 29/113 (25%), Positives = 60/113 (53%)
Query: 488 LLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547
L +W + Q E+ E ++ + S+L P +LRR K+ ++ +LP + V Y
Sbjct: 368 LFDEWFE--QNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKS-----LLPKIETNV-YV 419
Query: 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+T+ + +Y++L ++ + V G+ +L ++++LR+CC+HP+L
Sbjct: 420 GMTDMQIQWYKSLLEKDIDAVNGAV--GK-REGKTRLLNIVMQLRKCCNHPYL 469
Score = 93 (37.8 bits), Expect = 3.1e-13, Sum P(5) = 3.1e-13
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D E S K+ +L K L+ L GS+ ++FSQ + LD+L+ +
Sbjct: 473 AEPGPPYTTD-EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDF 531
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNN 792
+ R+DG+ + ++R + + ++++ N+
Sbjct: 532 EYCRIDGSTSHEERIEAIDEYNKPNS 557
Score = 87 (35.7 bits), Expect = 3.1e-13, Sum P(5) = 3.1e-13
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
+ LDS D L S + S K +D E ++D + + IV Y +I E P
Sbjct: 120 KQLDS-DANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEE-EEIVDT-YQEDIFVSESP 176
Query: 329 STLKC-ELRPYQKQALHWMVQLEKGR 353
S +K +LR YQ Q L+W++ L + +
Sbjct: 177 SFVKSGKLRDYQVQGLNWLISLHENK 202
Score = 69 (29.3 bits), Expect = 3.1e-13, Sum P(5) = 3.1e-13
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+ L
Sbjct: 205 GILADEMGLGKTLQTISFL 223
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(5) = 3.1e-13
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I G LII P + L W +
Sbjct: 232 IEGPFLIIVPKSTLDNWRR 250
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 124 (48.7 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 303 GDQKLVERLHAVLKPFLLRRIKAEVEKS------LPPKKEVKIYLGLSKMQREWYTRILM 356
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 357 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 389
Score = 99 (39.9 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ +LFSQ T LD+L+ + RLDG ++RE+
Sbjct: 409 SGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 468
Query: 784 LKQFSEDNN 792
+ F+ N+
Sbjct: 469 IDTFNAPNS 477
Score = 76 (31.8 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 128 GILADEMGLGKTLQTIALL 146
Score = 55 (24.4 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
E PS +K LR YQ + L+WM+ L E G
Sbjct: 97 ESPSYVKGGTLRDYQVRGLNWMISLYENG 125
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 124 (48.7 bits), Expect = 4.1e-13, Sum P(4) = 4.1e-13
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 99 (39.9 bits), Expect = 4.1e-13, Sum P(4) = 4.1e-13
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE+
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 547
Query: 784 LKQFSEDNN 792
++ F+ N+
Sbjct: 548 IEAFNVPNS 556
Score = 76 (31.8 bits), Expect = 4.1e-13, Sum P(4) = 4.1e-13
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 50 (22.7 bits), Expect = 4.1e-13, Sum P(4) = 4.1e-13
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
RP KD SL+ A + + + +D E +S+S + V V + E+ P
Sbjct: 130 RPRIKKDD---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNVCVRF-----EVSPS 179
Query: 329 STLKCELRPYQKQALHWMVQL-EKG 352
LR YQ + L+W++ L E G
Sbjct: 180 YVKGGPLRDYQIRGLNWLISLYENG 204
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 127 (49.8 bits), Expect = 5.3e-13, Sum P(4) = 5.3e-13
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L +G + +LFSQ T +DLL+I LS N+ +LRLDG+ QR +
Sbjct: 694 SGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGIL 753
Query: 784 LKQFSEDNN 792
LKQF+E ++
Sbjct: 754 LKQFNEPDS 762
Score = 94 (38.1 bits), Expect = 5.3e-13, Sum P(4) = 5.3e-13
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 504 DERGLKLVQS---ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
DE L ++ +++P +LRR KS ++ LP ++ C+++ +K +Y+ +
Sbjct: 589 DEEELLIINRLHHVIRPFLLRRKKSEVEK------FLPGKTQVILKCDMSAWQKLYYKQV 642
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+V + + L N L ++LR+CC+HP+L
Sbjct: 643 TDVGRVGLHSGNGKSKSLQN------LTMQLRKCCNHPYL 676
Score = 76 (31.8 bits), Expect = 5.3e-13, Sum P(4) = 5.3e-13
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIAL+
Sbjct: 407 GILADEMGLGKTIQTIALI 425
Score = 57 (25.1 bits), Expect = 5.3e-13, Sum P(4) = 5.3e-13
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 318 YSSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL 349
+S + + + PS L+ ELR YQ + L WMV L
Sbjct: 368 HSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSL 400
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 631 EDKDVPSRAYVQEVVEE 647
E+K+VP AY E E+
Sbjct: 916 EEKEVPEWAYTSETQED 932
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 124 (48.7 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHTVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 104 (41.7 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE++
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEI 547
Query: 784 LKQF 787
LK F
Sbjct: 548 LKDF 551
Score = 76 (31.8 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 49 (22.3 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 300 DDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
+D E +S+S + V V + E+ P LR YQ + L+W++ L E G
Sbjct: 156 EDEELLSESRKTSNVCVRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 204
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 109 (43.4 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV--MSRGDT-QD 609
E FY L S+ KF+++ G + + A +L +LLRLRQ C+HP LV S DT +
Sbjct: 309 EWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRK 368
Query: 610 YSDLNKLAKR 619
SD ++A R
Sbjct: 369 MSDGVRVAPR 378
Score = 77 (32.2 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDG 441
GGILAD GLGKT+ TI+L+L + + Q S G
Sbjct: 76 GGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSGG 116
Score = 77 (32.2 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 440 DGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQKP 499
D G+ G IS S L++K KS S + K N+ GGTLI+CP +++ QW + +++
Sbjct: 82 DQGL-GKTISTISLILLQKL-KSQSKQRKRKGQNS---GGTLIVCPASVVKQWAREVKE- 135
Query: 500 YEEGDERGLKLVQSILKPIMLRRTKSSTD 528
+ DE L S+L RTK T+
Sbjct: 136 -KVSDEHKL----SVLVHHGSHRTKDPTE 159
Score = 71 (30.1 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTK 524
P + +++ I+ P ++ G K +Q+IL+ IMLRRTK
Sbjct: 269 PYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 66 (28.3 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 647 ELQKGEQGECPICLEAFEDAVLTPCAHRLCRECL 680
+L K C +C + +D V+T C H C EC+
Sbjct: 386 DLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECV 419
Score = 56 (24.8 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 327 PPSTLKCELRPYQKQALHWMVQLEK 351
PP L L +QK AL+WM + EK
Sbjct: 45 PPGVLTVPLMRHQKIALNWMRKKEK 69
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGR 532
D++GL S + I+L++ KS + + R
Sbjct: 81 DDQGLGKTISTISLILLQKLKSQSKQRKR 109
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 130 (50.8 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ L K L G+K +LF+Q+ LD+L+I L+ N F+RLDG+ +QR+K+
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 784 LKQFSEDNNI 793
+ +F+ D +I
Sbjct: 1827 VTKFNNDKSI 1836
Score = 94 (38.1 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 24/105 (22%), Positives = 51/105 (48%)
Query: 493 NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
N I+K + + + ++++P +LRR K + ++E +P +I C+LT
Sbjct: 856 NLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKE------MPNKYEHIIKCKLTRR 909
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
++ Y+ V+ + G NY ++ +L++LR+ C+H
Sbjct: 910 QQILYDEFINNKNVQ--NTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 71 (30.1 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 297 NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
ND ++ E +DSD ++ + E + P +K LR YQ LHW++ L K
Sbjct: 624 NDDNNNEHKNDSDDNDDILTCNMDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYK 678
Score = 67 (28.6 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ I+LL
Sbjct: 683 GILADEMGLGKTLQCISLL 701
Score = 47 (21.6 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQTNTLIN 477
SD N++ LSI KL+ Q+N L N
Sbjct: 1267 SDYPTNIINHRNAFLSILKLLNQSNPLNN 1295
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 447 DISDQSPNLMKKE--PKS-LSI-DKLIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEE 502
D+ N + KE PK+ LS D+ + + N + +L I P +N+ + K EE
Sbjct: 1369 DVHSYIYNSIYKEYIPKNILSFSDEFLTELNNNYDILSLYIDPYNRYKSYNEYLYKMKEE 1428
Query: 503 G 503
G
Sbjct: 1429 G 1429
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 130 (50.8 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ L K L G+K +LF+Q+ LD+L+I L+ N F+RLDG+ +QR+K+
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 784 LKQFSEDNNI 793
+ +F+ D +I
Sbjct: 1827 VTKFNNDKSI 1836
Score = 94 (38.1 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 24/105 (22%), Positives = 51/105 (48%)
Query: 493 NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
N I+K + + + ++++P +LRR K + ++E +P +I C+LT
Sbjct: 856 NLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKE------MPNKYEHIIKCKLTRR 909
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
++ Y+ V+ + G NY ++ +L++LR+ C+H
Sbjct: 910 QQILYDEFINNKNVQ--NTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 71 (30.1 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 297 NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
ND ++ E +DSD ++ + E + P +K LR YQ LHW++ L K
Sbjct: 624 NDDNNNEHKNDSDDNDDILTCNMDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYK 678
Score = 67 (28.6 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ I+LL
Sbjct: 683 GILADEMGLGKTLQCISLL 701
Score = 47 (21.6 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQTNTLIN 477
SD N++ LSI KL+ Q+N L N
Sbjct: 1267 SDYPTNIINHRNAFLSILKLLNQSNPLNN 1295
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 447 DISDQSPNLMKKE--PKS-LSI-DKLIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEE 502
D+ N + KE PK+ LS D+ + + N + +L I P +N+ + K EE
Sbjct: 1369 DVHSYIYNSIYKEYIPKNILSFSDEFLTELNNNYDILSLYIDPYNRYKSYNEYLYKMKEE 1428
Query: 503 G 503
G
Sbjct: 1429 G 1429
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 114 (45.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 841 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDI 922
Score = 96 (38.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP Q+ C ++E ++
Sbjct: 700 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDQIELCAMSEKQEQL 750
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + +E+ + N ++++LR+ +HP L
Sbjct: 751 YLGLFNRLKKSINN-IEKSTEMCN------VMMQLRKMANHPLL 787
Score = 72 (30.4 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 518 GILADEMGLGKTIQAIAFLAYLYQEG 543
Score = 67 (28.6 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G IE+ PS L
Sbjct: 436 GLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQ---PSILN 492
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 493 QSLSLKPYQKVGLNWLALVHK 513
Score = 44 (20.5 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 443 IEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTL 475
I+G I S ++++ ++L + LI+ T+T+
Sbjct: 154 IKGSKIRHLSREFLRRQCRTLHLKNLIESTSTM 186
Score = 43 (20.2 bits), Expect = 4.1e-10, Sum P(4) = 4.1e-10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
++D E S SDV + + YSS E ME
Sbjct: 355 IEDSEYDSGSDVGSSLDEDYSSGEEVME 382
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 114 (45.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 841 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDI 922
Score = 96 (38.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP Q+ C ++E ++
Sbjct: 700 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDQIELCAMSEKQEQL 750
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + +E+ + N ++++LR+ +HP L
Sbjct: 751 YLGLFNRLKKSINN-IEKSTEMCN------VMMQLRKMANHPLL 787
Score = 72 (30.4 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 518 GILADEMGLGKTIQAIAFLAYLYQEG 543
Score = 67 (28.6 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G IE+ PS L
Sbjct: 436 GLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQ---PSILN 492
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 493 QSLSLKPYQKVGLNWLALVHK 513
Score = 43 (20.2 bits), Expect = 4.1e-10, Sum P(4) = 4.1e-10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
++D E S SDV + + YSS E ME
Sbjct: 355 IEDSEYDSGSDVGSSLDEDYSSGEEVME 382
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 114 (45.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 841 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDI 922
Score = 96 (38.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP Q+ C ++E ++
Sbjct: 700 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDQIELCAMSEKQEQL 750
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + +E+ + N ++++LR+ +HP L
Sbjct: 751 YLGLFNRLKKSINN-IEKSTEMCN------VMMQLRKMANHPLL 787
Score = 72 (30.4 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 518 GILADEMGLGKTIQAIAFLAYLYQEG 543
Score = 67 (28.6 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G IE+ PS L
Sbjct: 436 GLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQ---PSILN 492
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 493 QSLSLKPYQKVGLNWLALVHK 513
Score = 43 (20.2 bits), Expect = 4.1e-10, Sum P(4) = 4.1e-10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
++D E S SDV + + YSS E ME
Sbjct: 355 IEDSEYDSGSDVGSSLDEDYSSGEEVME 382
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 124 (48.7 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 99 (39.9 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE+
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 547
Query: 784 LKQFSEDNN 792
++ F+ N+
Sbjct: 548 IEAFNVPNS 556
Score = 76 (31.8 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 50 (22.7 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
RP KD SL+ A + + + +D E +S+S + V V + E+ P
Sbjct: 130 RPRIKKDD---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNVCVRF-----EVSPS 179
Query: 329 STLKCELRPYQKQALHWMVQL-EKG 352
LR YQ + L+W++ L E G
Sbjct: 180 YVKGGPLRDYQIRGLNWLISLYENG 204
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 161 (61.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y
Sbjct: 80 EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYY 133
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 134 RAILEKN---FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLI 173
Score = 79 (32.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 206 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 265
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 266 RFCKPDS 272
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 112 (44.5 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 24/100 (24%), Positives = 54/100 (54%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
EE ++ +K + ++L+P +LRR KS + +LP ++ +Y ++ +K +Y+ +
Sbjct: 391 EEDQDKIVKQLHTVLQPFLLRRIKSDVETS-----LLPKKELN-LYVGMSSMQKKWYKKI 444
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
++ D + +L ++++LR+CC+HP+L
Sbjct: 445 LEKD---LDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYL 481
Score = 87 (35.7 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 291 VQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLE 350
V+ K +D E + + D D+ S E + E P+ + +LRPYQ Q ++W+V L
Sbjct: 156 VRRRKTEHEEDAELLKEEDSDD----DESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLH 211
Query: 351 KGR 353
K +
Sbjct: 212 KNK 214
Score = 84 (34.6 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D E + K+ VL K L+ L GS+ ++FSQ + LD+L+ N
Sbjct: 485 AEPGPPYTTD-EHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNY 543
Query: 767 PFLRLDGTLNQQQREKVLKQFS 788
+ R+DG+ + R + + ++
Sbjct: 544 EYCRIDGSTAHEDRIQAIDDYN 565
Score = 69 (29.3 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+ L
Sbjct: 217 GILADEMGLGKTLQTISFL 235
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
I G L+I P + L W + I +
Sbjct: 244 IPGPFLVIAPKSTLNNWLREINR 266
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 121 (47.7 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 26/98 (26%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 338 GDQKLVERLHAVLRPFLLRRIKAEVEKS------LPPKKEVKIYLGLSKMQREWYTRILM 391
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 392 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 424
Score = 92 (37.4 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
+ S K+ L K L + GS+ ++FSQ T LD+L+ + RLDG + RE
Sbjct: 442 INSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEARE 501
Query: 782 KVLKQFSEDNN 792
+ + F+ N+
Sbjct: 502 QAIDAFNAPNS 512
Score = 76 (31.8 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 164 GILADEMGLGKTLQTIALL 182
Score = 58 (25.5 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 300 DDVEPISDS-DVDNIVGVGYSSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+D E +S+S DN++ + E PS +K LR YQ + L+WM+ L E G
Sbjct: 113 EDEELLSESRKADNVL-------VRFEESPSYIKNGTLRDYQIRGLNWMISLYENG 161
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 114 (45.2 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 844 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 902
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 903 LDGKTQISERIHLIDEFNTDMDI 925
Score = 94 (38.1 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP Q+ C ++E ++
Sbjct: 703 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDQIELCAMSEKQEQL 753
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + +E+ + N ++++LR+ +HP L
Sbjct: 754 YLGLFNRLKKSINN-MEKNTEMCN------VMMQLRKMANHPLL 790
Score = 72 (30.4 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 521 GILADEMGLGKTIQAIAFLAYLYQEG 546
Score = 67 (28.6 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G IE+ PS L
Sbjct: 439 GLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQ---PSILN 495
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 496 QSLSLKPYQKVGLNWLALVHK 516
Score = 43 (20.2 bits), Expect = 6.5e-10, Sum P(4) = 6.5e-10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
++D E S SDV + + YSS E ME
Sbjct: 358 IEDSEYDSGSDVGSSLDEDYSSGEEVME 385
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 147 (56.8 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 44/125 (35%), Positives = 64/125 (51%)
Query: 303 EPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLD----EA 358
E I S D ++G +I ++ P ELRPYQ++A +WMVQ E+G + E
Sbjct: 266 EAIKPSKTDAMLG----DDIADLLP------ELRPYQRRAAYWMVQRERGDPITLGDKED 315
Query: 359 ATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIA 418
+ P + LD + +LN FSG ++ +GGILAD MGLGKTV +A
Sbjct: 316 NQFISPLSISVGFLDSATKM-FLNPFSGNISLTPEYFSPRIQGGILADEMGLGKTVELLA 374
Query: 419 LLLTH 423
+ +H
Sbjct: 375 CIFSH 379
Score = 95 (38.5 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 33/130 (25%), Positives = 56/130 (43%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P + W ++I+ PYE D + ++ K +M R +K E L LPP + V
Sbjct: 656 PFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE----LQLPPQEECV 711
Query: 545 IYCELTEAEKDFYE------ALFKRSKVKF--DQFVEQGR-------ILH-NYASILELL 588
+ + + E+ FY + R ++ +++G + H A +L L
Sbjct: 712 SWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSL 771
Query: 589 LRLRQCCDHP 598
L+LRQ C HP
Sbjct: 772 LKLRQACCHP 781
Score = 67 (28.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 691 LCPVCRK-TISRQ-----DLITAPTGSRFQVDIEKNWVES----TKIAVLLKELENLCLS 740
+CP+CR+ T R D + + + D E + V TKI + + + + S
Sbjct: 1387 MCPICRQHTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRILWIKSS 1446
Query: 741 G--SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQ 778
+K ++FS W LD+L+ + N+I +R+ G Q
Sbjct: 1447 DPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQ 1486
Score = 62 (26.9 bits), Expect = 6.9e-09, Sum P(5) = 6.9e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 KLIKQTNTLIN-GGTLIICPMTLLGQWNKLIQK 498
+L++ T + I+ G TLI+CP +L QW+ I +
Sbjct: 488 ELLQVTASPISTGATLIVCPAPILPQWHSEITR 520
Score = 43 (20.2 bits), Expect = 6.9e-09, Sum P(5) = 6.9e-09
Identities = 29/136 (21%), Positives = 58/136 (42%)
Query: 573 EQGRILHNYASI--LELLLRLRQCCDHPFL-VMSRGDTQDYSDLNKLAKRFLKGSSNALE 629
+Q ++L Y I + L+LR+ D + + R + S LN K + S +++
Sbjct: 1234 DQAQLLRAYDEINMSTMRLQLRESEDDTSIYALGRDELDVASVLNTNDKFMAQSSLLSIK 1293
Query: 630 GEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTS 689
G+ + Y++ +++ QK ++ E P + V E LL K +
Sbjct: 1294 GKLR------YLKGLMKSKQK-QESESPDLSSPIHETVDASDPAEQESENLL---KRDEA 1343
Query: 690 GLCPVCRKTISRQDLI 705
CP+C + + Q ++
Sbjct: 1344 --CPICHEILRNQKMV 1357
Score = 43 (20.2 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPP--ADMQVIYCELTEAEKDFYEALFKRSK--- 565
++ IL +++++T+S + R ++V A + ++ E +EA + EAL +
Sbjct: 798 MEEILM-VLVKKTQSEGEEALRVLIVALNGIAAIAMLKQEFSEAVSLYKEALSITEEHAE 856
Query: 566 -VKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGS 624
+ D + ILHN A IL + ++ D +D D ++ +KR
Sbjct: 857 DFRLDPLLNI-HILHNLAEILPMAKSYGGKLSASGRPETKIDVKD-DDHHRASKR---QR 911
Query: 625 SNALEGEDKDVPSRAYVQEVVEELQKG--EQGEC 656
N LE D + +E + G + GEC
Sbjct: 912 INELESLTHDSSETVHQREAIAP-DNGLKKDGEC 944
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(5) = 6.9e-09
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 545 IYCELTEAEKDFYEALFKRSK 565
I+CEL E +++ LF+ +K
Sbjct: 1102 IHCELDELFQEYEARLFRLNK 1122
Score = 41 (19.5 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 436 SQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLI 482
SQ + +G + Q N +KE KS+ + L+ Q NG L+
Sbjct: 1485 SQTAISKFKGSEKETQKTNSHQKEEKSIQVLLLLVQHGA--NGLNLL 1529
Score = 37 (18.1 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 717 IEKNWVESTKIAVLLKELENLCLSGS 742
+E N +T++A+ L C++G+
Sbjct: 611 VESNAAAATEMALRLYTKHRWCITGT 636
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 112 (44.5 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 41/125 (32%), Positives = 62/125 (49%)
Query: 484 CPMTLLGQ---WNKLIQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
C LLG +NK + E GD +K++ + P +LRRTK+ E LPP
Sbjct: 804 CLPGLLGTTAYFNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTE------LPP 857
Query: 540 ADMQVIYCELTEAEKDFYEA--LFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCD 596
EL + +++ YE+ L K++ + F QG + ++ L+ LL+LRQ CCD
Sbjct: 858 KTEIYQSLELEKDQRNLYESIRLSMEKKIR-ELFATQG-VAGSHIEFLDALLKLRQACCD 915
Query: 597 HPFLV 601
P LV
Sbjct: 916 -PRLV 919
Score = 87 (35.7 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GGILAD MGLGKT+ T+A LL Q +G
Sbjct: 652 GGILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Score = 71 (30.1 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEK 351
P+ L+ ELRPYQ+Q L+W+ L++
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKE 648
Score = 64 (27.6 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT--LNQQQRE 781
+ K+ L + L + G K ++FSQ+T+ L L++ L I + +L G L Q Q +
Sbjct: 930 NAKLNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQVQID 989
Query: 782 K 782
K
Sbjct: 990 K 990
Score = 54 (24.1 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 480 TLIICPMTLLGQWNK 494
+LIICP +L+G W K
Sbjct: 687 SLIICPTSLVGNWAK 701
Score = 39 (18.8 bits), Expect = 9.3e-10, Sum P(5) = 9.3e-10
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 641 VQEVVEELQKGEQGECPICLE 661
V+E ++E+Q+ +QG LE
Sbjct: 1057 VEEKIQEMQQHKQGLADSILE 1077
Score = 39 (18.8 bits), Expect = 4.1e-09, Sum P(5) = 4.1e-09
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 375 RELVVYLNAFSGEATIEFPSTLQ 397
R+L L F+G + P+ LQ
Sbjct: 607 RQLAAKLEQFTGVVAVTAPTQLQ 629
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 393 PSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDIS 449
P+T Q+ + A A+ + + +T+A + G + ++ + + GG Y I+
Sbjct: 365 PNTTQLKTTTLHAQAITISQPYVTLAFIYGDVVLSGNAAKEALTLVTQGGTT-YQIN 420
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 112 (44.5 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 41/125 (32%), Positives = 62/125 (49%)
Query: 484 CPMTLLGQ---WNKLIQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
C LLG +NK + E GD +K++ + P +LRRTK+ E LPP
Sbjct: 804 CLPGLLGTTAYFNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTE------LPP 857
Query: 540 ADMQVIYCELTEAEKDFYEA--LFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCD 596
EL + +++ YE+ L K++ + F QG + ++ L+ LL+LRQ CCD
Sbjct: 858 KTEIYQSLELEKDQRNLYESIRLSMEKKIR-ELFATQG-VAGSHIEFLDALLKLRQACCD 915
Query: 597 HPFLV 601
P LV
Sbjct: 916 -PRLV 919
Score = 87 (35.7 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GGILAD MGLGKT+ T+A LL Q +G
Sbjct: 652 GGILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Score = 71 (30.1 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEK 351
P+ L+ ELRPYQ+Q L+W+ L++
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKE 648
Score = 64 (27.6 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT--LNQQQRE 781
+ K+ L + L + G K ++FSQ+T+ L L++ L I + +L G L Q Q +
Sbjct: 930 NAKLNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQVQID 989
Query: 782 K 782
K
Sbjct: 990 K 990
Score = 54 (24.1 bits), Expect = 3.3e-12, Sum P(5) = 3.3e-12
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 480 TLIICPMTLLGQWNK 494
+LIICP +L+G W K
Sbjct: 687 SLIICPTSLVGNWAK 701
Score = 39 (18.8 bits), Expect = 9.3e-10, Sum P(5) = 9.3e-10
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 641 VQEVVEELQKGEQGECPICLE 661
V+E ++E+Q+ +QG LE
Sbjct: 1057 VEEKIQEMQQHKQGLADSILE 1077
Score = 39 (18.8 bits), Expect = 4.1e-09, Sum P(5) = 4.1e-09
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 375 RELVVYLNAFSGEATIEFPSTLQ 397
R+L L F+G + P+ LQ
Sbjct: 607 RQLAAKLEQFTGVVAVTAPTQLQ 629
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 393 PSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDIS 449
P+T Q+ + A A+ + + +T+A + G + ++ + + GG Y I+
Sbjct: 365 PNTTQLKTTTLHAQAITISQPYVTLAFIYGDVVLSGNAAKEALTLVTQGGTT-YQIN 420
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 111 (44.1 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 362 LHPCWEAYRLLDERELVVYLNAFSGEATI------EFPSTLQMARGGILADAMGLGKTVM 415
+HP W + L+D+RE + N F+G T+ + L + GGILAD MGLGKTV
Sbjct: 510 IHPIWSRF-LVDKREF--FYNQFTGRLTLKEVLLSDKKDDLSLM-GGILADEMGLGKTVE 565
Query: 416 TIALLLTH 423
+ L+L+H
Sbjct: 566 FLGLVLSH 573
Score = 86 (35.3 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 652 EQGECPICLEAF-EDAVLTPCAHRLCRECLLGSW-KTPTSGL--CPVCRKTISRQDLITA 707
E+ C IC E F ++ V+ C H C +C++ K P CP+CR + +++
Sbjct: 1561 EKSICAICQEVFGKNVVMLLCGHSFCYDCVMFMIEKVPNCRTIQCPICRARSNIEEISYL 1620
Query: 708 PTGSRFQVDIEKNWVES---TKIAVLLKELENLCLSGSKSI 745
T ++ + V+ TKI L++ + N+ K+I
Sbjct: 1621 STDKENGELVDNSNVKGSYGTKIESLVQSVINIQKKSIKTI 1661
Score = 71 (30.1 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 39/159 (24%), Positives = 68/159 (42%)
Query: 492 WNKLIQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA---DMQVIYC 547
WN +I Y G++ L I+ +M+R +K+ E L LP D +++
Sbjct: 913 WNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSKAMIRNE----LQLPNQYDNDTKLLRF 968
Query: 548 ELTEA---EKDFYEALFKRSKVKFDQFVEQGRILHNYA-----SILELLLRLRQCCDHPF 599
+ EA +K E + +++ F ++ GR + + + SIL LL LRQ C H F
Sbjct: 969 SMVEAHYYQKKANECS-QEARLLFQKYFRGGRSIQDISISHLNSILAPLLVLRQTCQH-F 1026
Query: 600 LVMSRGD---TQDYSDLNKLAKRFLKGSSNALEGEDKDV 635
V T + +L R ++ ++ + K V
Sbjct: 1027 QVGGHAVKPLTMSTMTMEQLLDRLIENATIEAKNHQKSV 1065
Score = 69 (29.3 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
K I+FSQW L+++ L N I F + E + QF +D N+
Sbjct: 1702 KIIIFSQWADVLEIISRALKENEIQFAK--AVHRGSSFEMAINQFRKDPNV 1750
Score = 54 (24.1 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 311 DNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLD 356
DN+ + EI + + + L+PYQ +A++WM+ E +D
Sbjct: 436 DNVKMDSDAVEISKSKFNGQMISTLKPYQLKAVNWMLNRELNPKID 481
Score = 51 (23.0 bits), Expect = 2.9e-10, Sum P(6) = 2.9e-10
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 611 SDLNKLAKRFLKGSSNALEG-EDKDVPSRAYVQEVVEELQKGEQGECPIC 659
+DL K F+K + L +KDV +E ++ Q+ + E P+C
Sbjct: 1297 TDLLKYRVNFIKTLTPLLHSFTEKDVEISINCRECCDKTQRTQNLESPVC 1346
Score = 50 (22.7 bits), Expect = 3.4e-12, Sum P(6) = 3.4e-12
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 474 TLING-GTLIICPMTLLGQWNKLIQK 498
TL+ TLI+ P T+ QW + I K
Sbjct: 755 TLVGSRATLIVAPNTIFTQWQEEIVK 780
Score = 44 (20.5 bits), Expect = 1.4e-09, Sum P(6) = 1.4e-09
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 577 ILHNYASI-LELLLRLRQCCD 596
+LH++ +E+ + R+CCD
Sbjct: 1313 LLHSFTEKDVEISINCRECCD 1333
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 543 QVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLR 590
+ I C + A + E + + + + V+ + +Y + +E L++
Sbjct: 1601 RTIQCPICRARSNIEEISYLSTDKENGELVDNSNVKGSYGTKIESLVQ 1648
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 114 (45.2 bits), Expect = 3.5e-12, Sum P(4) = 3.5e-12
Identities = 25/98 (25%), Positives = 58/98 (59%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD + ++ + ++L+P +LRR K+ ++ +LP +++ IY L++ ++++Y +
Sbjct: 359 GDTKLVERLHTVLRPFLLRRIKADVEKS-----LLPKKEIK-IYVGLSKMQREWYTKILM 412
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 413 KD---IDILNSAGKM--DKMRLLNVLMQLRKCCNHPYL 445
Score = 105 (42.0 bits), Expect = 3.5e-12, Sum P(4) = 3.5e-12
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D+ V S K+ VL K L L GS+ ++FSQ T LD+L+ N
Sbjct: 449 AEPGPPYTTDLHLV-VNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 507
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNN 792
+ RLDG ++R+ + F+E N+
Sbjct: 508 GYCRLDGQTPHEERQISINAFNEPNS 533
Score = 73 (30.8 bits), Expect = 3.5e-12, Sum P(4) = 3.5e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 184 GILADEMGLGKTLQTISLL 202
Score = 54 (24.1 bits), Expect = 3.5e-12, Sum P(4) = 3.5e-12
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 261 PSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDV--DNIVGVGY 318
P+ T PL K G + K + SA N E D ++ +N
Sbjct: 91 PAAQKTPTSPLKMKPG---RPRIKKDEKQNLLSAGDNRHRRTEQEEDEELLSENSKATSV 147
Query: 319 SSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ ++ PS +K +LR YQ + L+W++ L E G
Sbjct: 148 CTRFDDS--PSYVKTGKLRDYQVRGLNWLISLYENG 181
>UNIPROTKB|G4N1L6 [details] [associations]
symbol:MGG_07487 "ATP-dependent DNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 GO:GO:0005524
EMBL:CM001233 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15710
RefSeq:XP_003711395.1 ProteinModelPortal:G4N1L6
EnsemblFungi:MGG_07487T0 GeneID:2683407 KEGG:mgr:MGG_07487
Uniprot:G4N1L6
Length = 1514
Score = 109 (43.4 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 51/174 (29%), Positives = 84/174 (48%)
Query: 283 LLHANKSK--VQSAKVNDVDDVEPISDSDVDNIVGVGYSS--EIEEMEPPSTLKCELRPY 338
L+HA++++ + SA + + VE S+ +S+ EI M LK L P+
Sbjct: 194 LVHAHEARRAILSAVLPGLP-VET-SEGSPQEFYKAAHSTKPEIFNMSIQG-LKAVLYPF 250
Query: 339 QKQALHWMVQLEKGRC-LDEAATTLHPCWEAYRLLDE--RELV-VYLNAFSGEATIE--- 391
Q++A+ W++ E R AA +EA R + EL ++ N+F ++
Sbjct: 251 QRRAVRWLLGREGVRWEAGSAAWATVASYEAPRQVPPGFTELRDMHGNSFYASDLLDVAT 310
Query: 392 -----FPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR-GGLSGI-QSASQP 438
P + +GGIL++ MGLGKT+ I L+L HS G + G+ +A QP
Sbjct: 311 RDIDSIPYRVDAIKGGILSEEMGLGKTLEMIGLILLHSAPPGSVVGVGDNAQQP 364
Score = 102 (41.0 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 28/109 (25%), Positives = 47/109 (43%)
Query: 598 PF-LVMSRGDTQDYSDLNKLAKRFLKGSSNAL-EGEDKDVPSRAYVQEVVEELQKGEQGE 655
PF +++ + +D + + A LK L + +K Y+ + K E
Sbjct: 1101 PFDVILDKDGERDEAAMTH-AMHVLKNEEERLAQIVEKVGTEHRYLINLKNAGDKEESRI 1159
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704
CPIC + V+T C H+ ++CLL W CP C++ + R L
Sbjct: 1160 CPICQTEITNGVMTMCGHQFDKDCLL-EWLKRAPN-CPTCKRGVQRYQL 1206
Score = 73 (30.8 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 724 STKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
+TK+ +++ + L LS G+KSI+FSQ+T F +L ++ I F + G N +R
Sbjct: 1274 TTKVDAIVRHILWLRLSEPGAKSIIFSQYTGFFGVLSAAFTKYQIGFSSI-GEHNGIERF 1332
Query: 782 K 782
K
Sbjct: 1333 K 1333
Score = 53 (23.7 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 26/93 (27%), Positives = 38/93 (40%)
Query: 513 SILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFV 572
+I + LR +K E L LP VI E +Y+ LF+R VK
Sbjct: 547 AIFNTLALRHSKQLVRDE----LDLPLQKRYVINIPFNAVEDQYYQRLFRRL-VKNCDLN 601
Query: 573 EQGRIL------HNYASILELLL-RLRQCCDHP 598
EQG + +Y +++ L LR+ HP
Sbjct: 602 EQGEPMVDDWDPKDYTAVMRNCLDTLRKAALHP 634
Score = 51 (23.0 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 478 GGTLIICPMTLLGQW 492
G TLII P TL QW
Sbjct: 370 GATLIITPTTLRAQW 384
Score = 46 (21.3 bits), Expect = 4.7e-12, Sum P(6) = 4.7e-12
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 28 RALHMANHDPAAAINIIFDTPNFKTPEIKPLAARRK 63
+ +H+A P A+ D + EI+P A RRK
Sbjct: 23 KPIHIARDFPIEALAFFRDFGDDDVIEIEPPAKRRK 58
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 106 (42.4 bits), Expect = 4.7e-12, Sum P(4) = 4.7e-12
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 713 FQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLD 772
+Q+D++ ++S K L L L G + +LFSQ+T LD+L++ L + +LRLD
Sbjct: 841 YQLDMDLI-LDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLD 899
Query: 773 GTLNQQQREKVLKQFSEDNNI 793
G +R ++ +F+ D +I
Sbjct: 900 GKTQISERIHLIDEFNTDMDI 920
Score = 99 (39.9 bits), Expect = 4.7e-12, Sum P(4) = 4.7e-12
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K + +LPP Q+ C ++E ++
Sbjct: 698 QSIYEK--ER-IAHAKQIIKPFILRRVKEEV------LKLLPPKKDQIELCAMSEKQEQL 748
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + L + ++++LR+ +HP L
Sbjct: 749 YSGLFNRLKKSINN-------LEKNTEMCNVMMQLRKMANHPLL 785
Score = 72 (30.4 bits), Expect = 4.7e-12, Sum P(4) = 4.7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 516 GILADEMGLGKTIQAIAFLAYLFQEG 541
Score = 68 (29.0 bits), Expect = 4.7e-12, Sum P(4) = 4.7e-12
Identities = 29/112 (25%), Positives = 48/112 (42%)
Query: 247 RLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKV-----NDVDD 301
+++ + PF E L+T+ ++ GL L+ K+ +Q V N +D
Sbjct: 412 KIIELRPFNNWE----TLFTKMSKIN-----GLSEDLIWNCKTVIQERDVVIRLMNKCED 462
Query: 302 VEPISDSDVDNIVGVGYSSEIEEMEPPSTLK--CELRPYQKQALHWMVQLEK 351
+ V + G G IE+ PS L L+PYQK L+W+ + K
Sbjct: 463 ISNKLTKQVTMLTGNGGGWNIEQ---PSLLNQSLSLKPYQKVGLNWLALVHK 511
Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
V+D E S SD + + YSS E ME
Sbjct: 353 VEDSEYDSGSDAGSSLDEDYSSCEEVME 380
Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 303 EPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQAL 343
EP D + ++ ++I E+E S L+ +L+ + Q L
Sbjct: 125 EPSEDEESHDLPSATRRNDISELEDLSELE-DLKDAKLQTL 164
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 114 (45.2 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 841 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDI 922
Score = 91 (37.1 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 28/104 (26%), Positives = 49/104 (47%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP ++ C ++E ++
Sbjct: 700 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDRIELCAMSEKQEQL 750
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + L + ++++LR+ +HP L
Sbjct: 751 YLGLFNRLKKSINN-------LEKNTEMCNVMMQLRKMANHPLL 787
Score = 72 (30.4 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 518 GILADEMGLGKTIQAIAFLAYLYQEG 543
Score = 67 (28.6 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G IE+ PS L
Sbjct: 436 GLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQ---PSILN 492
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 493 QSLSLKPYQKVGLNWLALVHK 513
Score = 44 (20.5 bits), Expect = 1.0e-09, Sum P(4) = 1.0e-09
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
V+D E S SDV + + YSS E ME
Sbjct: 355 VEDSEYDSGSDVGSSLDEDYSSGEEVME 382
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 125 (49.1 bits), Expect = 5.4e-12, Sum P(5) = 5.4e-12
Identities = 32/130 (24%), Positives = 68/130 (52%)
Query: 494 KLIQKPYEEGDERGLKLV---QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELT 550
++++ E D+ ++V ++L+P +LRR K+ +++ +P V+YC L+
Sbjct: 1028 QILEHGRETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQ------MPGKYEHVVYCRLS 1081
Query: 551 EAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
+ ++ Y+ R++ K + + G NY SI+ L++LR+ C+HP L +R + +
Sbjct: 1082 KRQRYLYDGFMSRAQTK--ETLASG----NYLSIINCLMQLRKVCNHPDLFETRPISTSF 1135
Query: 611 SDLNKLAKRF 620
+ +A F
Sbjct: 1136 AMPRSVATEF 1145
Score = 111 (44.1 bits), Expect = 5.4e-12, Sum P(5) = 5.4e-12
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ L K L +L G ++++F+Q T LD+L+ L+ + +LRLDGT +QR+ +
Sbjct: 1374 KLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTD 1433
Query: 786 QFSEDNNIM 794
+F+ DN I+
Sbjct: 1434 RFNNDNRIL 1442
Score = 79 (32.9 bits), Expect = 5.4e-12, Sum P(5) = 5.4e-12
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKT+ TIALL + G+ G
Sbjct: 846 GILADEMGLGKTIQTIALLAHLAVEHGVWG 875
Score = 41 (19.5 bits), Expect = 5.4e-12, Sum P(5) = 5.4e-12
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 328 PSTLKCELRPYQKQALHWMVQL 349
P L+ LR YQ L W+ L
Sbjct: 818 PHLLRGTLREYQHFGLDWLAGL 839
Score = 39 (18.8 bits), Expect = 5.4e-12, Sum P(5) = 5.4e-12
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 255 KKAEFTPSDLYTRKRPLDS 273
++AE PSDL P++S
Sbjct: 18 ERAEPVPSDLLPNNSPVNS 36
Score = 37 (18.1 bits), Expect = 8.5e-12, Sum P(5) = 8.5e-12
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 144 ARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
A+ C+E+ R KD +I R E R
Sbjct: 367 AKSLAAACAEVWRKRNKDPEDILREQQEEMR 397
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 119 (46.9 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 376 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 429
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 430 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 462
Score = 100 (40.3 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R++
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQES 541
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 542 INAYNEPNS 550
Score = 73 (30.8 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENG 198
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 424 SQRGGLSGIQSASQPSDGGIEGYD------ISDQSPNLMKK--EPKSLSIDKL 468
S +GG G+ + + PS G D D SP K+ EP +K+
Sbjct: 32 SNKGGPEGVAAQATPSAAGSGPADSEMEEVFDDASPGKQKEIQEPDPTYEEKM 84
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 119 (46.9 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 376 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 429
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 430 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 462
Score = 100 (40.3 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R++
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQES 541
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 542 INAYNEPNS 550
Score = 73 (30.8 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENG 198
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 119 (46.9 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 376 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 429
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 430 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 462
Score = 100 (40.3 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R++
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQES 541
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 542 INAYNEPNS 550
Score = 73 (30.8 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENG 198
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 120 (47.3 bits), Expect = 7.0e-12, Sum P(4) = 7.0e-12
Identities = 37/129 (28%), Positives = 63/129 (48%)
Query: 296 VN-DVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRC 354
VN +V E ++D+ + + + + EM+PP+ + L +QKQAL +M + E R
Sbjct: 434 VNYEVRSAEEVTDAVMKMFDQLQSADNLPEMDPPAVVTTPLLRHQKQALWFMTEKEAPRK 493
Query: 355 LDEAATTLHPCW-EAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKT 413
+ W E Y ++ Y SG + P + GG+LAD MGLGKT
Sbjct: 494 FGPKEEDNNSLWREEYSANGTKK---YREVISGIVLDQEPP---QSLGGLLADMMGLGKT 547
Query: 414 VMTIALLLT 422
+ ++L+++
Sbjct: 548 LSILSLVIS 556
Score = 117 (46.2 bits), Expect = 7.0e-12, Sum P(4) = 7.0e-12
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIP-FLRLDGTLNQQQREKVLKQFSEDNN 792
KS++FS WT+ LDL++I L + + RLDGT++ R K L F +DNN
Sbjct: 1016 KSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRDDNN 1066
Score = 68 (29.0 bits), Expect = 7.0e-12, Sum P(4) = 7.0e-12
Identities = 51/220 (23%), Positives = 86/220 (39%)
Query: 483 ICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADM 542
I P ++N I ++ GD L ++ ++ LRR K D LP
Sbjct: 717 IYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDSFTLRRVKDKID--------LPARHD 768
Query: 543 QVIYCELTEAEKDFYEALFKRSKVKF------DQFVEQGRILHNYASILELLLRLRQCCD 596
+++ E +E+E +E K S V D+ +GR+ H+ IL+ ++ LRQ
Sbjct: 769 KIVMLEFSESEAQLHEFFRKESNVMMRVIAGEDKSKMKGRMYHH---ILKAMMILRQISA 825
Query: 597 HPFLVMSRGDTQDYSDLNKL-AKRFLKG-SSNALEGEDKDVPSRAYVQEV---------- 644
H ++ + L+ A +G S++A+ + K +QE
Sbjct: 826 HGKELLDSDERARIKGLSVHDAIDLEEGPSADAVATDKKAYEMFTLMQESSADMCAICSK 885
Query: 645 -VEELQKGEQGEC-PICLEAFEDAVLTPCAHRLCRECLLG 682
+EE G P ++ A + PC LC EC G
Sbjct: 886 RLEEPNPDANGSSVPGKVDII--AFILPCFDVLCPECFSG 923
Score = 40 (19.1 bits), Expect = 7.0e-12, Sum P(4) = 7.0e-12
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 480 TLIICPMTLLGQWNKLIQKPYEEG 503
TL++ P++ + W +++ +G
Sbjct: 586 TLLVAPLSTVNNWVSQVKEHLRDG 609
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 119 (46.9 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 375 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 428
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 429 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 461
Score = 98 (39.6 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R+
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDS 540
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 541 INAYNEPNS 549
Score = 73 (30.8 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 200 GILADEMGLGKTLQTISLL 218
Score = 52 (23.4 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENG 197
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 119 (46.9 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 375 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 428
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 429 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 461
Score = 98 (39.6 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R+
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDS 540
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 541 INAYNEPNS 549
Score = 73 (30.8 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 200 GILADEMGLGKTLQTISLL 218
Score = 52 (23.4 bits), Expect = 8.7e-12, Sum P(4) = 8.7e-12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENG 197
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 123 (48.4 bits), Expect = 9.3e-12, Sum P(4) = 9.3e-12
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P F++D E+ S K +L + L L + G K +LFSQ T LD+L N
Sbjct: 583 PVTQEFKID-EELVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFN 641
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ +REK + F+ D ++
Sbjct: 642 FSRLDGSMSYTEREKNMHSFNTDPDV 667
Score = 80 (33.2 bits), Expect = 9.3e-12, Sum P(4) = 9.3e-12
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L++ ++ FY A+
Sbjct: 430 KEREQNVLHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLSKKQEVFYTAI 483
Query: 561 FKRS 564
R+
Sbjct: 484 VNRT 487
Score = 76 (31.8 bits), Expect = 9.3e-12, Sum P(4) = 9.3e-12
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKTV IA + QRG
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRG 269
Score = 58 (25.5 bits), Expect = 9.3e-12, Sum P(4) = 9.3e-12
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 587 LLLRLRQCCDHPFLV 601
+++ LR+CC+HP+L+
Sbjct: 563 IMMLLRKCCNHPYLI 577
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 125 (49.1 bits), Expect = 9.9e-12, Sum P(4) = 9.9e-12
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 383 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 436
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 437 KD---IDVLNSSGKM--DKMRLLNILMQLRKCCNHPYL 469
Score = 91 (37.1 bits), Expect = 9.9e-12, Sum P(4) = 9.9e-12
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ L K L + GS+ ++FSQ T LD+L+ + RLDG ++RE+
Sbjct: 489 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEA 548
Query: 784 LKQFSEDNN 792
+ F+ N+
Sbjct: 549 IDAFNAPNS 557
Score = 76 (31.8 bits), Expect = 9.9e-12, Sum P(4) = 9.9e-12
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 208 GILADEMGLGKTLQTIALL 226
Score = 49 (22.3 bits), Expect = 9.9e-12, Sum P(4) = 9.9e-12
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 300 DDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
+D E +S+S + V V + E+ P LR YQ + L+W++ L E G
Sbjct: 157 EDEELLSESRKTSNVCVRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 205
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 122 (48.0 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P F+VD E+ S K +L + L L G K +LFSQ T LD+L N
Sbjct: 561 PVTQEFKVD-EELVTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFN 619
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ +REK + F+ D ++
Sbjct: 620 FSRLDGSMSYSEREKNIHSFNTDPDV 645
Score = 80 (33.2 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L++ ++ FY A+
Sbjct: 408 KEREQNVLHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLSKKQEIFYTAI 461
Query: 561 FKRS 564
R+
Sbjct: 462 VNRT 465
Score = 76 (31.8 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKTV IA + QRG
Sbjct: 222 GILADEMGLGKTVQCIATIALMIQRG 247
Score = 58 (25.5 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 587 LLLRLRQCCDHPFLV 601
+++ LR+CC+HP+L+
Sbjct: 541 IMMLLRKCCNHPYLI 555
Score = 38 (18.4 bits), Expect = 5.8e-08, Sum P(4) = 5.8e-08
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 360 TTLHPCWEAYRLLDE 374
TTL C+ Y ++DE
Sbjct: 319 TTLQNCYWKYLIVDE 333
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 120 (47.3 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 361 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 414
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 415 KD---IDILNSAGKL--DKMRLLNILMQLRKCCNHPYL 447
Score = 92 (37.4 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R+
Sbjct: 467 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQAS 526
Query: 784 LKQFSE 789
+ ++E
Sbjct: 527 INAYNE 532
Score = 73 (30.8 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 186 GILADEMGLGKTLQTISLL 204
Score = 55 (24.4 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
E PS +K +LR YQ + L+W++ L E G
Sbjct: 155 ESPSYVKWGKLRDYQVRGLNWLISLYENG 183
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 119 (46.9 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 376 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 429
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 430 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 462
Score = 98 (39.6 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R+
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDS 541
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 542 INAYNEPNS 550
Score = 73 (30.8 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
+ PS +K +LR YQ + L+W++ L E G
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENG 198
Score = 38 (18.4 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 53 PEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEG 92
PE P + N G A+A+A S G
Sbjct: 13 PESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAASAG 52
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 162 (62.1 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y
Sbjct: 580 EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYY 633
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 634 RAILEKN---FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLI 673
Score = 79 (32.9 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 706 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 765
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 766 RFCKPDS 772
Score = 60 (26.2 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +I L
Sbjct: 405 ILADEMGLGKTIQSITFL 422
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I+G LII P++ + W +
Sbjct: 430 IHGPFLIIAPLSTITNWER 448
Score = 39 (18.8 bits), Expect = 1.4e-11, Sum P(5) = 1.4e-11
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 382 QLREYQLEGMNWLL 395
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 121 (47.7 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P F++D E+ S K +L + L L G K +LFSQ T LD+L N
Sbjct: 584 PVTQEFKID-EELVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFN 642
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ +REK + F+ D ++
Sbjct: 643 FSRLDGSMSYSEREKNMHSFNTDPDV 668
Score = 80 (33.2 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L++ ++ FY A+
Sbjct: 431 KEREQNVLHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLSKKQEIFYTAI 484
Query: 561 FKRS 564
R+
Sbjct: 485 VNRT 488
Score = 76 (31.8 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKTV IA + QRG
Sbjct: 245 GILADEMGLGKTVQCIATIALMIQRG 270
Score = 58 (25.5 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 587 LLLRLRQCCDHPFLV 601
+++ LR+CC+HP+L+
Sbjct: 564 IMMLLRKCCNHPYLI 578
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 122 (48.0 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 37/121 (30%), Positives = 57/121 (47%)
Query: 498 KPYEEGDERGLKLVQSILK---PIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554
K + E G ++S+ K P MLRR K + LPP +Q YCEL++ +K
Sbjct: 1510 KTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSD------LPPKIIQDYYCELSDLQK 1563
Query: 555 DFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLN 614
Y+ K K V QG + + L +R+ C+HP LVMS + Y+++N
Sbjct: 1564 KLYKDFAKTQKETIKTDV-QGSEKEGKTHVFQALQYMRKLCNHPALVMSEQHPK-YAEIN 1621
Query: 615 K 615
+
Sbjct: 1622 Q 1622
Score = 92 (37.4 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 18/58 (31%), Positives = 38/58 (65%)
Query: 739 LSGSKSILFSQWTAFLDLLQIPLSRNNIP---FLRLDGTLNQQQREKVLKQFSEDNNI 793
+S ++++F Q LD+++ L R +P F+RLDG+ + + R+ ++++F+ED +I
Sbjct: 1684 ISEHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSI 1741
Score = 67 (28.6 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 307 DSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
D + D I + ++I+ + P T+K LR YQ++ ++W+ L K
Sbjct: 1274 DRERDFIQQMMDPTKIKSFDLPVTIKATLRKYQQEGVNWLAFLNK 1318
Score = 62 (26.9 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 402 GILADAMGLGKTVMTIALL 420
GIL D MGLGKT+ TI ++
Sbjct: 1323 GILCDDMGLGKTLQTICIV 1341
Score = 53 (23.7 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 480 TLIICPMTLLGQWNKLIQK 498
+L+ICP +L+G W + I +
Sbjct: 1365 SLVICPPSLIGHWEQEINQ 1383
Score = 39 (18.8 bits), Expect = 4.2e-09, Sum P(5) = 4.2e-09
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 275 DGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCE 334
D LH L+ +K+ ++K +D+D + +D + + SS I + E S L E
Sbjct: 136 DSFSLH-ELIKCG-TKLLASKSDDIDPEDYTNDVTLLGRIKRHRSSIIPKEETKSDLSKE 193
Query: 335 LRP 337
P
Sbjct: 194 SSP 196
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(6) = 1.9e-11
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 127 KSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPH---EWSRCLLPLVRDK 183
K ++ S P+K+F+ +V+P + + G I + H +LP V
Sbjct: 1164 KCLATICSVVPAKAFIFIVNSVLPMLKNAGDVKQRQGAIETVYHISAAMGASILPYVMFL 1223
Query: 184 KVEILG 189
V ++G
Sbjct: 1224 IVPVMG 1229
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 112 (44.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +L+P +LRR K +++ LP ++ C L++ ++ Y+ R K +
Sbjct: 769 LHKVLRPFILRRLKKEVEKQ------LPEKTEHIVNCSLSKRQRYLYDDFMSRRSTK--E 820
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
++ G N S+L ++++LR+CC+HP L R
Sbjct: 821 NLKSG----NMMSVLNIVMQLRKCCNHPNLFEPR 850
Score = 105 (42.0 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+AVLL++L L + ++F+Q + LD+LQ LS + + RLDGT +QR+ ++++
Sbjct: 1193 LAVLLRQLY---LYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMER 1249
Query: 787 FSEDNNI 793
F+ D +
Sbjct: 1250 FNADPKV 1256
Score = 75 (31.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 579 GILADEMGLGKTIQTISLL 597
Score = 61 (26.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 255 KKAEFTPSDLYTRKRPLD--SKDGCGL-HASLLHANKSKVQSAKVND-VDDVEPISDSDV 310
+K + SDL T ++ D ++DG G H L + + K+ S ++ ++ I++ +
Sbjct: 474 QKPSTSSSDL-TAEQLQDPTAEDGNGDGHGVLENVDYVKLNSQDSDERQQELANIAEEAL 532
Query: 311 DNIVGVGYSSEIEEME-P-PSTLKCELRPYQKQALHWMVQL-EK 351
GY+ E +++ P P ++ +LR YQ L WMV L EK
Sbjct: 533 -KFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEK 575
Score = 38 (18.4 bits), Expect = 8.3e-05, Sum P(4) = 8.3e-05
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 760 PLSRNNIPFLRLDGTLNQQQR 780
P+S N +P L T QQR
Sbjct: 2200 PMSSNVVPVRVLPATQQGQQR 2220
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 151 (58.2 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E ++ +QSILKP+MLRR K ++ L P +I ELT+ +K +Y
Sbjct: 1044 EFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKN------LAPKQETIIEVELTDVQKKYY 1097
Query: 558 EALFKRSKVKFDQFVEQGRILH-NYASILELLLRLRQCCDHPFLV 601
A+ +R+ F F+ G + N ++L ++ LR+CC+HP+L+
Sbjct: 1098 RAILERN---FS-FLSMGATQNSNVPNLLNTMMELRKCCNHPYLI 1138
Score = 81 (33.6 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ +L K L L G K ++FSQ LD+L+ L + R+DG + R+ +
Sbjct: 1171 KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1230
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1231 RFSKPDS 1237
Score = 75 (31.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 44/161 (27%), Positives = 69/161 (42%)
Query: 279 LHASLLHANKSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-C 333
+H L + Q + D+ EP + +VD I+ +S + + EP +K C
Sbjct: 730 IHQKLKRFKTKQAQMRNLFQEDE-EPFNPDYVEVDRILDESHSVDKDNGEPVVYYLVKWC 788
Query: 334 ELRPYQKQALHWMVQLEKGRCLD----EAAT-----TLHPCWEAYRLLDERELVVYLNAF 384
L PY+ +++G+ + E+ T P A++ LDE Y N
Sbjct: 789 SL-PYEDATWELKEDVDEGKVEEFRKIESRQPRLKRTPRPAASAWKKLDES--TEYKNGN 845
Query: 385 S-GEATIEFPSTLQM----ARGGILADAMGLGKTVMTIALL 420
E +E + L + ILAD MGLGKT+ +IALL
Sbjct: 846 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALL 886
Score = 45 (20.9 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 137 PSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPE 196
P S V A++P V ++ +IPHE S P+ + + A
Sbjct: 57 PILSDVVTDPALIPTPVSVPLQNLQTQQLSQIPHEVSVASAPISIQPSLSVASNSSGAAT 116
Query: 197 VL 198
VL
Sbjct: 117 VL 118
Score = 39 (18.8 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 23/98 (23%), Positives = 41/98 (41%)
Query: 657 PICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ-----DLITAPTGS 711
P+ ++ +D +L LC + G W + + + T+S + DL +
Sbjct: 2168 PLRVDWPKDRILINRIENLCSLVITGHWPSGRRYISDIQLNTVSDEHELGDDLGYSRVAR 2227
Query: 712 RFQVDIEKNWVES--TKIAV-LLKELENLCLSGSKSIL 746
+ + +E ++ V LLKE E L L+ SK L
Sbjct: 2228 KINSTLSAEALEGQESEFTVKLLKE-EGLKLTFSKQAL 2264
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 123 (48.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR 780
W++S K+ L + L +G + ++FSQ+ +D+L++ L ++ F+RLDGT + + R
Sbjct: 922 WMDSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDR 981
Query: 781 EKVLKQFSEDNNI 793
+ ++ F E+ +I
Sbjct: 982 QSIMDTFHENTDI 994
Score = 104 (41.7 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 46/160 (28%), Positives = 79/160 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ +S+LKP +LRR K ++ LP +V YCE+ A+++ YE ++++VK
Sbjct: 776 IERAKSMLKPFVLRRKKHQ-------VIDLPAKISRVEYCEMNAAQREIYE--HEKNEVK 826
Query: 568 FDQFVEQ---GRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSD--LNKLAKRFLK 622
+ +E G+ N ++ +L++LRQ HP L + Y+D L K++K L+
Sbjct: 827 --KLLEDRAAGKKTGNKSA--NILMKLRQAAIHPLL-----HRRHYNDKILTKMSKACLQ 877
Query: 623 GSSNALEGEDKDVPSRAYVQEVVEELQKGEQGEC-PICLE 661
A + D P Y E+LQ EC +C+E
Sbjct: 878 EEKWA----ESD-PKLIY-----EDLQPYNDFECHQLCVE 907
Score = 68 (29.0 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPS 439
ILAD MGLGKT IA L H G+ G PS
Sbjct: 586 ILADDMGLGKTCQVIAFL-AHLYEKGIKGPHLVVVPS 621
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 114 (45.2 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
+ FQ+D++ ++S K VL L L G + +LFSQ+T LD+L++ L + +LR
Sbjct: 843 NNFQLDMDLI-LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 901
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG +R ++ +F+ D +I
Sbjct: 902 LDGKTQISERIHLIDEFNTDMDI 924
Score = 89 (36.4 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 29/104 (27%), Positives = 52/104 (50%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP ++ C ++E ++
Sbjct: 702 QSIYEK--ER-IAHAKQIIKPFILRRVKEEVLKQ------LPPKKDRIELCAMSEKQEQL 752
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + +E+ + N ++++LR+ +HP L
Sbjct: 753 YMNLFNRLKKSINN-MEKNTEMCN------VMMQLRKMANHPLL 789
Score = 72 (30.4 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 520 GILADEMGLGKTIQAIAFLAYLYQEG 545
Score = 62 (26.9 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G E+ PS L
Sbjct: 438 GLSEDLIWHCKTLIQERDVVIKLMNKCEDISNKLTKQVTMLTGNGGGWNTEQ---PSILN 494
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 495 QSLSLKPYQKVGLNWLALVHK 515
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(5) = 1.6e-09
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
++D E S SDV + + YSS E ME
Sbjct: 357 IEDSEYDSGSDVGSSLDEDYSSGEEVME 384
Score = 41 (19.5 bits), Expect = 1.6e-09, Sum P(5) = 1.6e-09
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 334 ELRPYQK-QALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYL 381
ELRP+ +AL ++ K L E W L+ ER++V+ L
Sbjct: 419 ELRPFNSWEAL--FTKMSKTNGLSEDLI-----WHCKTLIQERDVVIKL 460
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 135 (52.6 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 50/157 (31%), Positives = 77/157 (49%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDRE-GRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
+E+ LK + ILKP MLRR K + E G I + +YC+LT+ +K Y+AL
Sbjct: 1053 NEQQLKRLHMILKPFMLRRVKKNVQSELGEKI-------EKEVYCDLTQRQKILYQAL-- 1103
Query: 563 RSKVKFDQFVEQGRIL---HNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKR 619
R ++ + +E+ IL ASI+ L+++ R+ C+HP L R D + L +K
Sbjct: 1104 RRQISIAELLEKA-ILGGDDTVASIMNLVMQFRKVCNHPDL-FEREDVRSPLSLATWSKS 1161
Query: 620 FLKGSSNALEGEDKDVP--SRAYVQEVVEELQKGEQG 654
EG DVP +R ++ + L EQG
Sbjct: 1162 IYINR----EGNFLDVPYNTRNFITFSIPRLLY-EQG 1193
Score = 74 (31.1 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 23/96 (23%), Positives = 48/96 (50%)
Query: 693 PVCRKTISRQDLITAPTGSRFQVDIEKNWV-ESTKIAVLLKELENLCLSGSKSILFSQWT 751
P+ RK + I + S ++ ++ +S K++ L K L L + + +++ Q T
Sbjct: 1396 PIPRKPLLPSFGIAKGSYSNVRIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMT 1455
Query: 752 AFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQF 787
+DL++ L+ +LRLDG+ QR ++ ++
Sbjct: 1456 RMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEW 1491
Score = 68 (29.0 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 402 GILADAMGLGKTVMTIALLL----THSQRGGLSGIQSAS 436
GILAD MGLGKTV +I+++ TH+ G I AS
Sbjct: 863 GILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPAS 901
Score = 67 (28.6 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 280 HASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQ 339
H+ L AN+ + + +D+++ E + N V + E+++ P L C+L+ YQ
Sbjct: 795 HSQLFDANRQQSPNNSSSDMNEGE----MNFQNPTLVN-AFEVKQ---PKMLMCKLKEYQ 846
Query: 340 KQALHWMVQL-EKG 352
+ L+W+ L E+G
Sbjct: 847 LKGLNWLANLYEQG 860
Score = 53 (23.7 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488
L G+ + + GI G ++D+ + K +S+S+ + +T+ I G L+I P +
Sbjct: 847 LKGLNWLANLYEQGINGI-LADEMG--LGKTVQSISVMAYLAETHN-IWGPFLVIAPAST 902
Query: 489 LGQWNKLIQK 498
L W + I +
Sbjct: 903 LHNWQQEITR 912
Score = 46 (21.3 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 430 SGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGT 480
+ +QSA SDG + S ++P + K KL T+ NG T
Sbjct: 509 ASLQSAGVASDG-----ESSPETPLTKASKSKKAKASKLANDTSKNANGET 554
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 107 (42.7 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
+E L + ILKP MLRR K + E +P +YC LT +K Y+++ R
Sbjct: 1372 NEHQLNRLHMILKPFMLRRIKRDVENE------MPSKTEVEVYCNLTHRQKKLYQSI--R 1423
Query: 564 SKVKFDQ------FVEQGRILHNYASILELLLRLRQCCDHP 598
S + + F EQG + +++ +++ R+ C+HP
Sbjct: 1424 SNISITELLGGASFSEQGSM----KALMNFVMQFRKVCNHP 1460
Score = 95 (38.5 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 719 KNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQ 778
K+ +S K+ VL K L++L + G + +++SQ+T +++L+ + +LRLDG+
Sbjct: 1761 KSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLD 1820
Query: 779 QREKVLKQFSEDNNI 793
R ++ F D +I
Sbjct: 1821 DRRDMVDDFQSDPSI 1835
Score = 77 (32.2 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 16/58 (27%), Positives = 35/58 (60%)
Query: 292 QSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
+S V+D V+ + D+++ + G+S+ + ++ P+ L +L+PYQ + + W+V L
Sbjct: 1120 ESLAVSDKMMVDGLPMIDMNSSIPPGFSTA-DTLKQPTILNADLKPYQLKGMTWIVNL 1176
Score = 71 (30.1 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ +IA+L
Sbjct: 1183 GILADEMGLGKTIQSIAVL 1201
Score = 42 (19.8 bits), Expect = 7.7e-05, Sum P(4) = 7.7e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
D + + LV+ + ++ T E P VLPP+ Q++ L E
Sbjct: 1692 DCKEISLVKLTMNGLITNETTKELS-ESLPT-VLPPSSNQIVLDNLKE 1737
Score = 37 (18.1 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 306 SDSDVDNIVGVGYSSEIEEMEP 327
SDSDVD SS I + P
Sbjct: 551 SDSDVDFSTTPTLSSHISKYSP 572
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 125 (49.1 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 358 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 411
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 412 KD---IDVLNSSGKM--DKMRLLNILMQLRKCCNHPYL 444
Score = 85 (35.0 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE
Sbjct: 464 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERE 521
Score = 76 (31.8 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 183 GILADEMGLGKTLQTIALL 201
Score = 49 (22.3 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 257 AEFTPSDLYTRK--RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV 314
A+ +P+ K RP KD SL+ A + + + +D E +S+S + V
Sbjct: 92 AQKSPTSPLNMKLGRPRIKKDE---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNV 146
Query: 315 GVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
+ + E+ P LR YQ + L+W++ L E G
Sbjct: 147 CIRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 180
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 110 (43.8 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
++S K+++L + L +L G + +LFSQ+T LD+L++ L + + RLDG+ R
Sbjct: 779 LDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRI 838
Query: 782 KVLKQFSEDNNI 793
++ QF+ D +I
Sbjct: 839 GLIDQFNTDQDI 850
Score = 97 (39.2 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 37/126 (29%), Positives = 63/126 (50%)
Query: 514 ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVE 573
I+KP +LRR KS ++ LP + QV +C ++E +++ Y AL K+K E
Sbjct: 644 IMKPFILRRVKSEVLKQ------LPAKEEQVEFCAMSERQQELYSALLH--KLKHSSNGE 695
Query: 574 QGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKR--FLKGSSNALEGE 631
+ R L N ++++LR+ +HP L T+ ++KL + + + AL E
Sbjct: 696 K-RELTN------VMMQLRKMSNHPLLHRQFYTTEKLKAMSKLMLKEPSHRDADPALIKE 748
Query: 632 DKDVPS 637
D +V S
Sbjct: 749 DMEVLS 754
Score = 70 (29.7 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPS 439
GILAD MGLGKT+ I+ L H + G G + P+
Sbjct: 450 GILADEMGLGKTIQAISFL-AHLYQEGNHGPHLITVPA 486
Score = 57 (25.1 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 26/107 (24%), Positives = 46/107 (42%)
Query: 247 RLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPIS 306
++ + PFK + D R+ L ++ G L K +K ++ V+ I
Sbjct: 347 KITELRPFKTWKDL-DDAMRRRNGLSAELLAGCREVLKEREVVKGLMSKCEEIS-VKLIQ 404
Query: 307 DSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGR 353
D V ++ G S + ST +L+PYQ L+W+V L + +
Sbjct: 405 D--VTQVMDKGPGSMTQPEILSSTF--QLKPYQLIGLNWLVLLHQNK 447
Score = 54 (24.1 bits), Expect = 7.9e-11, Sum P(4) = 7.9e-11
Identities = 38/146 (26%), Positives = 62/146 (42%)
Query: 231 SAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSK 290
S +DS P + R+ P +A+ T L + +P S+ G S A +
Sbjct: 224 SEDDSSQTSTPAKHTRRVAETRP--QAQVTK--LSSPPKPKPSRPLDGTRTSQRIAKQPI 279
Query: 291 VQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLE 350
+ AK V E SDS+ + G+ S + E S LK E+ + + A + L
Sbjct: 280 L--AKYTYVSSEEECSDSEASVVNGLLDSDSDQSEETLSKLKTEILCFFQSASVDELTLI 337
Query: 351 KGRCLDEAA--TTLHPCWEAYRLLDE 374
G L +A T L P ++ ++ LD+
Sbjct: 338 AGCSLKKAQKITELRP-FKTWKDLDD 362
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 117 (46.2 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P F++D E+ S K +L + L L G K +LFSQ T+ LD+L +
Sbjct: 583 PVTQEFKID-EELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFN 641
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ +REK + F+ D +
Sbjct: 642 FSRLDGSMSYSEREKNMHSFNTDPEV 667
Score = 80 (33.2 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L++ ++ FY A+
Sbjct: 430 KEREQNVLHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLSKKQEIFYTAI 483
Query: 561 FKRS 564
R+
Sbjct: 484 VNRT 487
Score = 76 (31.8 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKTV IA + QRG
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRG 269
Score = 58 (25.5 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 587 LLLRLRQCCDHPFLV 601
+++ LR+CC+HP+L+
Sbjct: 563 IMMLLRKCCNHPYLI 577
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 125 (49.1 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 379 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 432
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 433 KD---IDVLNSSGKM--DKMRLLNILMQLRKCCNHPYL 465
Score = 85 (35.0 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE
Sbjct: 485 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERE 542
Score = 76 (31.8 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 204 GILADEMGLGKTLQTIALL 222
Score = 49 (22.3 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 257 AEFTPSDLYTRK--RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV 314
A+ +P+ K RP KD SL+ A + + + +D E +S+S + V
Sbjct: 113 AQKSPTSPLNMKLGRPRIKKDE---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNV 167
Query: 315 GVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
+ + E+ P LR YQ + L+W++ L E G
Sbjct: 168 CIRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 201
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 114 (45.2 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 25/98 (25%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP +Y L++ +++++
Sbjct: 391 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKVYLGLSKMQREWWYTKIL 444
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 445 MKDI--DVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 478
Score = 93 (37.8 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK- 782
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++REK
Sbjct: 498 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKK 557
Query: 783 -VLKQFSEDNN 792
++ F+ N+
Sbjct: 558 EAIEAFNAPNS 568
Score = 76 (31.8 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 216 GILADEMGLGKTLQTIALL 234
Score = 53 (23.7 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 257 AEFTPSDLYTRK--RPLDSKDGCGLHASLLHANKS-KVQSAKVNDVDDVEPISDSDVDNI 313
A+ +P+ K RP KD SL+ A + + + +D E +S+S +
Sbjct: 122 AQKSPTSPLNMKLGRPRIKKDD---KQSLISAGEYFSYRHRRTEQEEDEELLSESRKTSN 178
Query: 314 VGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
V V + E+ P LR YQ + L+W++ L E G
Sbjct: 179 VCVRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 213
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 124 (48.7 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 85 (35.0 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERE 545
Score = 76 (31.8 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 50 (22.7 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
RP KD SL+ A + + + +D E +S+S + V V + E+ P
Sbjct: 130 RPRIKKDD---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNVCVRF-----EVSPS 179
Query: 329 STLKCELRPYQKQALHWMVQL-EKG 352
LR YQ + L+W++ L E G
Sbjct: 180 YVKGGPLRDYQIRGLNWLISLYENG 204
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 124 (48.7 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 85 (35.0 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERE 545
Score = 76 (31.8 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 50 (22.7 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
RP KD SL+ A + + + +D E +S+S + V V + E+ P
Sbjct: 130 RPRIKKDD---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNVCVRF-----EVSPS 179
Query: 329 STLKCELRPYQKQALHWMVQL-EKG 352
LR YQ + L+W++ L E G
Sbjct: 180 YVKGGPLRDYQIRGLNWLISLYENG 204
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 124 (48.7 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 382 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 435
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 436 KD---IDVLNSAGKM--DKMRLLNILMQLRKCCNHPYL 468
Score = 85 (35.0 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
S K+ VL K L L GS+ ++FSQ T LD+L+ + RLDG ++RE
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERE 545
Score = 76 (31.8 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 50 (22.7 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 269 RPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPP 328
RP KD SL+ A + + + +D E +S+S + V V + E+ P
Sbjct: 130 RPRIKKDD---KQSLISAGDYRHR--RTEQEEDEELLSESRKTSNVCVRF-----EVSPS 179
Query: 329 STLKCELRPYQKQALHWMVQL-EKG 352
LR YQ + L+W++ L E G
Sbjct: 180 YVKGGPLRDYQIRGLNWLISLYENG 204
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 109 (43.4 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+A+L K L L GS+ ++FSQ T LD+L+ N + RLDG + R +
Sbjct: 430 SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQ 489
Query: 784 LKQFSEDNN 792
+++F+ DN+
Sbjct: 490 IQEFNMDNS 498
Score = 96 (38.9 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 24/98 (24%), Positives = 53/98 (54%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD+ + + ++LKP +LRR K+ ++ + P +M+ I+ L++ ++D+Y +
Sbjct: 324 GDDALITRLHAVLKPFLLRRLKAEVEKR-----LKPKKEMK-IFVGLSKMQRDWYTKVLL 377
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L++LR+C +HP+L
Sbjct: 378 KD---IDVVNGAGKV--EKMRLQNILMQLRKCTNHPYL 410
Score = 73 (30.8 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 149 GILADEMGLGKTLQTISLL 167
Score = 56 (24.8 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 288 KSKVQSAKVNDVDDVEPISD---------SDVDNIVGVGYSSEIEEMEP-PSTLKC-ELR 336
K K + K+ D D + ++D D + + + EI + P+ +K E+R
Sbjct: 70 KPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMR 129
Query: 337 PYQKQALHWMVQL-EKG 352
YQ + L+WM+ L E G
Sbjct: 130 DYQIRGLNWMISLYENG 146
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 144 (55.7 bits), Expect = 6.0e-11, Sum P(5) = 6.0e-11
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 632 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 685
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 686 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 718
Score = 80 (33.2 bits), Expect = 6.0e-11, Sum P(5) = 6.0e-11
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 751 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 810
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 811 RFSKPDS 817
Score = 70 (29.7 bits), Expect = 6.0e-11, Sum P(5) = 6.0e-11
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 331 EDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 389
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 390 REFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 449
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 450 ILADEMGLGKTIQSIAFL 467
Score = 52 (23.4 bits), Expect = 6.0e-11, Sum P(5) = 6.0e-11
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 70 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 129
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS S +SK KS + VV + R ++ D ++ +P + R
Sbjct: 130 EEKPKKSKTSGTSKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 181
Score = 43 (20.2 bits), Expect = 6.0e-11, Sum P(5) = 6.0e-11
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 463 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 493
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 109 (43.4 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 717 IEKNWVEST--KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
IE N + T K+++L K L L S+ +LFSQ T LD++ N P+LR+DG+
Sbjct: 616 IEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGS 675
Query: 775 LNQQQREKVLKQFSEDNN 792
+R+ + QF+E N+
Sbjct: 676 TPGDERQVRINQFNEPNS 693
Score = 96 (38.9 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +ILKP MLRR K ++ LPP I+ +++ +K Y + ++ D
Sbjct: 529 LHTILKPFMLRRLKVEVEQS------LPPKREIYIFVGMSKLQKKLYSDILSKN---IDV 579
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ + +L +L++LR+CC+HP+L
Sbjct: 580 L---NAMTGSKNQMLNILMQLRKCCNHPYL 606
Score = 73 (30.8 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 343 GILADEMGLGKTLQTISLL 361
Score = 55 (24.4 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 325 MEPPSTLKCELRPYQKQALHWMVQL 349
++ P + ++PYQ + L+W+ QL
Sbjct: 312 LKQPMNINGTMKPYQLEGLNWLYQL 336
Score = 48 (22.0 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 473 NTLINGGTLIICPMTLLGQWNKLIQK 498
N I ++IICP + L W + I+K
Sbjct: 367 NKNIKKKSIIICPRSTLDNWYEEIKK 392
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 109 (43.4 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 717 IEKNWVEST--KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
IE N + T K+++L K L L S+ +LFSQ T LD++ N P+LR+DG+
Sbjct: 616 IEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGS 675
Query: 775 LNQQQREKVLKQFSEDNN 792
+R+ + QF+E N+
Sbjct: 676 TPGDERQVRINQFNEPNS 693
Score = 96 (38.9 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +ILKP MLRR K ++ LPP I+ +++ +K Y + ++ D
Sbjct: 529 LHTILKPFMLRRLKVEVEQS------LPPKREIYIFVGMSKLQKKLYSDILSKN---IDV 579
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ + +L +L++LR+CC+HP+L
Sbjct: 580 L---NAMTGSKNQMLNILMQLRKCCNHPYL 606
Score = 73 (30.8 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 343 GILADEMGLGKTLQTISLL 361
Score = 55 (24.4 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 325 MEPPSTLKCELRPYQKQALHWMVQL 349
++ P + ++PYQ + L+W+ QL
Sbjct: 312 LKQPMNINGTMKPYQLEGLNWLYQL 336
Score = 48 (22.0 bits), Expect = 6.7e-11, Sum P(5) = 6.7e-11
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 473 NTLINGGTLIICPMTLLGQWNKLIQK 498
N I ++IICP + L W + I+K
Sbjct: 367 NKNIKKKSIIICPRSTLDNWYEEIKK 392
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 115 (45.5 bits), Expect = 7.1e-11, Sum P(5) = 7.1e-11
Identities = 29/116 (25%), Positives = 62/116 (53%)
Query: 492 W-NKLIQKPYEEGDERGLKLVQSI------LKPIMLRRTKSSTDREGRPILVLPPADMQV 544
W +K + + EEG + + + ++ L+P +LRR K+ +++ +P V
Sbjct: 642 WFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKTEVEKQ------MPAKYEHV 695
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+YC+L++ ++ Y+ R++ + + + G N+ SI+ L++LR+ C+HP L
Sbjct: 696 VYCQLSKRQRFLYDDFINRARTR--EILASG----NFMSIINCLMQLRKVCNHPNL 745
Score = 104 (41.7 bits), Expect = 7.1e-11, Sum P(5) = 7.1e-11
Identities = 23/68 (33%), Positives = 44/68 (64%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ VL + L++L +G + ++F+Q T LD+L+ L+ + +LRLDG +QR+ + +
Sbjct: 992 KLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTE 1051
Query: 786 QFSEDNNI 793
+F+ D+ I
Sbjct: 1052 RFNNDDKI 1059
Score = 78 (32.5 bits), Expect = 7.1e-11, Sum P(5) = 7.1e-11
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 468 GILADEMGLGKTIQTIALL 486
Score = 44 (20.5 bits), Expect = 7.1e-11, Sum P(5) = 7.1e-11
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQL 349
+++ P + LR YQ+ L W+ L
Sbjct: 436 KIQVPFLFRGTLREYQQYGLEWLTAL 461
Score = 37 (18.1 bits), Expect = 7.1e-11, Sum P(5) = 7.1e-11
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 288 KSKVQSAKVNDVDDVEPISDSDVDN 312
K+ + + + D EP+S D +N
Sbjct: 274 KNIEREEEAEETSDDEPLSSEDEEN 298
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 106 (42.4 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 713 FQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLD 772
+Q+D++ ++S K L L L G + +LFSQ+T LD+L++ L + +LRLD
Sbjct: 838 YQLDMDLI-LDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLD 896
Query: 773 GTLNQQQREKVLKQFSEDNNI 793
G +R ++ +F+ D +I
Sbjct: 897 GKTQISERIHLIDEFNTDMDI 917
Score = 95 (38.5 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 28/104 (26%), Positives = 49/104 (47%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K + +LPP ++ C ++E ++
Sbjct: 695 QSIYEK--ER-IAHAKQIIKPFILRRVKEEV------LKLLPPKKDRIELCAMSEKQEQL 745
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y LF R K + L + ++++LR+ +HP L
Sbjct: 746 YSGLFNRLKKSINN-------LEKNTEMCNVMMQLRKMANHPLL 782
Score = 72 (30.4 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 513 GILADEMGLGKTIQAIAFLAYLFQEG 538
Score = 60 (26.2 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 278 GLHASLLHANKSKVQSAKV-----NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
GL L+ K+ +Q V N +D+ V + G G E+ PS L
Sbjct: 431 GLSEDLIWNCKTVIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNREQ---PSLLN 487
Query: 333 --CELRPYQKQALHWMVQLEK 351
L+PYQK L+W+ + K
Sbjct: 488 QSLSLKPYQKVGLNWLALVHK 508
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 299 VDDVEPISDSDVDNIVGVGYSSEIEEME 326
V+D E S SD + + YSS E ME
Sbjct: 350 VEDSEYDSGSDAGSSLDEDYSSCEEVME 377
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 144 (55.7 bits), Expect = 9.9e-11, Sum P(4) = 9.9e-11
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 241 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 294
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 295 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 327
Score = 80 (33.2 bits), Expect = 9.9e-11, Sum P(4) = 9.9e-11
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 360 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 419
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 420 RFSKPDS 426
Score = 64 (27.6 bits), Expect = 9.9e-11, Sum P(4) = 9.9e-11
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 59 ILADEMGLGKTIQSIAFL 76
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(4) = 1.2e-08
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 72 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 102
Score = 38 (18.4 bits), Expect = 9.9e-11, Sum P(4) = 9.9e-11
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 36 QLREYQLEGVNWLL 49
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 122 (48.0 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 34/114 (29%), Positives = 53/114 (46%)
Query: 498 KPYEEGDERGLKLVQSILK---PIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554
K + E G+ ++++ K P MLRR K + LPP +Q YCEL + +K
Sbjct: 1480 KTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSD------LPPKIIQDYYCELGDLQK 1533
Query: 555 DFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ 608
Y K+ K ++ +E I I + L +R+ C+HP LV+S Q
Sbjct: 1534 QLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQ 1587
Score = 96 (38.9 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 19/63 (30%), Positives = 44/63 (69%)
Query: 734 LENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP---FLRLDGTLNQQQREKVLKQFSED 790
++N+ +S ++++F Q LD+++ L + +P ++RLDG+++ + R+KV+++F+ED
Sbjct: 1640 IQNV-ISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNED 1698
Query: 791 NNI 793
+I
Sbjct: 1699 PSI 1701
Score = 63 (27.2 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 402 GILADAMGLGKTVMTIALL 420
GIL D MGLGKT+ TI ++
Sbjct: 1293 GILCDDMGLGKTLQTICII 1311
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
S+ + + P +K LR YQ+ ++W+ L K
Sbjct: 1257 SKAKPFKLPIAIKATLRKYQQDGVNWLAFLNK 1288
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(5) = 1.1e-10
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 480 TLIICPMTLLGQW 492
+LIICP +L G W
Sbjct: 1335 SLIICPPSLTGHW 1347
Score = 41 (19.5 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 12 TVRSVVGPEFSNMDIIRALHMANHDPAAAIN 42
TVR + P+ S+ DII + + A +N
Sbjct: 1368 TVRLTLRPQLSDADIIVTSYDVARNDLAVLN 1398
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 133 (51.9 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 33/98 (33%), Positives = 57/98 (58%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
D++ KL Q ILKP+MLRR K ++ L P + +I +L++ +K FY A+ +R
Sbjct: 1405 DDQVQKL-QEILKPMMLRRLKEDVEKS------LGPKEETIIEVQLSDMQKKFYRAILER 1457
Query: 564 SKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+ F + G + S++ +++ LR+CC+HPFL+
Sbjct: 1458 N---FSHLCK-GT---SAPSLMNVMMELRKCCNHPFLI 1488
Score = 104 (41.7 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ ++ K L L G K ++FSQ LDLL+ L + PF R+DG + R+
Sbjct: 1520 SGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAA 1579
Query: 784 LKQFSEDNN 792
+ +FS++N+
Sbjct: 1580 IDRFSKENS 1588
Score = 67 (28.6 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 399 ARGGILADAMGLGKTVMTIALL 420
A+ ILAD MGLGKTV TI L
Sbjct: 1215 AQNCILADEMGLGKTVQTITFL 1236
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 425 QRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK------EPKSLSIDKLI 469
++GG G + A + G+EG D+ + K +P ++ ++K++
Sbjct: 940 KKGG-GGKKKADPTDEAGVEGAKSDDEDDEFLMKIDTPAPDPNAMVVEKIL 989
Score = 45 (20.9 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 299 VDDVEPISDSDVDNIVGVGYS-SEIEEME 326
VD P+ D++N GV + E EE++
Sbjct: 815 VDQSTPVKADDIENFAGVEETFGEEEEVQ 843
Score = 39 (18.8 bits), Expect = 4.4e-10, Sum P(4) = 4.4e-10
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 315 GVGYSSEIEEMEPPSTLKCELRPYQKQ 341
G+G S+ MEP ++ P Q Q
Sbjct: 577 GIGVSTAPASMEPSQSVDQSAPPSQAQ 603
Score = 38 (18.4 bits), Expect = 5.6e-10, Sum P(4) = 5.6e-10
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 67 SKENEIRASSENGTLAEAIAEGYSEGSE 94
S+E + ENG E++ G S S+
Sbjct: 1017 SEEKVKKEPKENGENGESVGNGESSKSK 1044
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 125 (49.1 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 27/98 (27%), Positives = 56/98 (57%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + ++LKP +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 359 GDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKILM 412
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 413 KD---IDVLNSSGKM--DKMRLLNILMQLRKCCNHPYL 445
Score = 80 (33.2 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ L K L + GS+ ++FSQ T LD+L+ + RLDG ++RE +
Sbjct: 465 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENL 524
Score = 76 (31.8 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 184 GILADEMGLGKTLQTIALL 202
Score = 49 (22.3 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 300 DDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
+D E +S+S + V V + E+ P LR YQ + L+W++ L E G
Sbjct: 133 EDEELLSESRKTSNVCVRF-----EVSPSYVKGGPLRDYQIRGLNWLISLYENG 181
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 144 (55.7 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 968 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1021
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1022 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1054
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1088 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1147
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1148 RFSKPDS 1154
Score = 70 (29.7 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 667 EDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 725
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 726 REFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 785
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 786 ILADEMGLGKTIQSIAFL 803
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 406 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 465
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS S +SK KS + VV + R ++ D ++ +P + R
Sbjct: 466 EEKPKKSKTSGTSKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 517
Score = 44 (20.5 bits), Expect = 2.9e-07, Sum P(4) = 2.9e-07
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 281 ASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQK 340
A+L A ++ Q AKV + ++ IV SS+ + +PPST L Q+
Sbjct: 275 AALTQAKNAQGQPAKVVTIQ-LQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQ 333
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 799 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 829
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 491 QWNKLIQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPAD--MQVIYC 547
Q+ KL + P E+ G+ +L+ +KP +LRRTK E LPP +Q +
Sbjct: 848 QFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATE------LPPKTEIIQTLRI 901
Query: 548 ELTEAEKDFYEA--LFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRG 605
E +AE YE+ L S++K D ++G + + +L+ LL+LRQ C+HP L+ G
Sbjct: 902 EGKQAE--LYESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLKLEG 957
Score = 86 (35.3 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLS 430
GILAD MGLGKT+ T+A LL Q+G L+
Sbjct: 683 GILADDMGLGKTIQTLAHLLIEKQQGRLT 711
Score = 78 (32.5 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L++ L G K ++FSQ+T+ L L++ L I +++L G+ + R++
Sbjct: 963 QSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTK--RQE 1020
Query: 783 VLKQF 787
V+ +F
Sbjct: 1021 VVDKF 1025
Score = 51 (23.0 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWM 346
++ + P L LR YQ Q L+W+
Sbjct: 648 QVTTIPVPEGLNATLRTYQHQGLNWL 673
Score = 39 (18.8 bits), Expect = 6.7e-07, Sum P(5) = 6.7e-07
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 642 QEVVEELQKGE 652
QEVV++ Q+GE
Sbjct: 1019 QEVVDKFQRGE 1029
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 15 SVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50
S +G E+S +I + + AN + A + + T +
Sbjct: 163 SSIGSEYSASSLINSAY-ANDEDVAVLTELMRTNQY 197
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 491 QWNKLIQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPAD--MQVIYC 547
Q+ KL + P E+ G+ +L+ +KP +LRRTK E LPP +Q +
Sbjct: 848 QFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATE------LPPKTEIIQTLRI 901
Query: 548 ELTEAEKDFYEA--LFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRG 605
E +AE YE+ L S++K D ++G + + +L+ LL+LRQ C+HP L+ G
Sbjct: 902 EGKQAE--LYESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLKLEG 957
Score = 86 (35.3 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLS 430
GILAD MGLGKT+ T+A LL Q+G L+
Sbjct: 683 GILADDMGLGKTIQTLAHLLIEKQQGRLT 711
Score = 78 (32.5 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L++ L G K ++FSQ+T+ L L++ L I +++L G+ + R++
Sbjct: 963 QSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTK--RQE 1020
Query: 783 VLKQF 787
V+ +F
Sbjct: 1021 VVDKF 1025
Score = 51 (23.0 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWM 346
++ + P L LR YQ Q L+W+
Sbjct: 648 QVTTIPVPEGLNATLRTYQHQGLNWL 673
Score = 39 (18.8 bits), Expect = 6.7e-07, Sum P(5) = 6.7e-07
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 642 QEVVEELQKGE 652
QEVV++ Q+GE
Sbjct: 1019 QEVVDKFQRGE 1029
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 15 SVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50
S +G E+S +I + + AN + A + + T +
Sbjct: 163 SSIGSEYSASSLINSAY-ANDEDVAVLTELMRTNQY 197
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 110 (43.8 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 27/100 (27%), Positives = 57/100 (57%)
Query: 502 EGDERGL-KLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
E D++ + + + +L+P +LRR KS ++ G LPP ++ +++ +K +Y+AL
Sbjct: 388 ENDQQEVVQQLHKVLRPFLLRRLKSDVEK-G-----LPPKKETILKVGMSQMQKQYYKAL 441
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
++ + E+ R+L+ + ++LR+CC+HP+L
Sbjct: 442 LQKDLEVVNGGGERKRLLN-------IAMQLRKCCNHPYL 474
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 402 GILADAMGLGKTVMTIALLL-THSQRG 427
GILAD MGLGKT+ TI+LL H RG
Sbjct: 215 GILADEMGLGKTLQTISLLAYLHEYRG 241
Score = 75 (31.5 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ +L K L L S+ ++FSQ T LD+L+ L + R+DG +R+ ++
Sbjct: 496 KMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIE 555
Query: 786 QFSE 789
+++
Sbjct: 556 AYNK 559
Score = 66 (28.3 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 293 SAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EK 351
S+K+ + ++ E + IVG G + + + P+ ++ +LR YQ L+W+++L E
Sbjct: 155 SSKLTEEEEDEECLKEEEGGIVGSGGTRLLTQ---PACIQGKLRDYQLAGLNWLIRLYEN 211
Query: 352 G 352
G
Sbjct: 212 G 212
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 144 (55.7 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1135 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1194
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1195 RFSKPDS 1201
Score = 70 (29.7 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 714 EDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 772
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 773 REFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 832
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 833 ILADEMGLGKTIQSIAFL 850
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 453 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 512
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS S +SK KS + VV + R ++ D ++ +P + R
Sbjct: 513 EEKPKKSKTSGTSKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 564
Score = 44 (20.5 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 281 ASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQK 340
A+L A ++ Q AKV + ++ IV SS+ + +PPST L Q+
Sbjct: 322 AALTQAKNAQGQPAKVVTIQ-LQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVALSSVQQ 380
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 846 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 876
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 144 (55.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1134 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1193
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1194 RFSKPDS 1200
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 714 EDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 772
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 773 REFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 832
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 833 ILADEMGLGKTIQSIAFL 850
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 453 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLK 512
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS S +SK KS + VV + R ++ D ++ +P + R
Sbjct: 513 EEKPKKSKTSGASKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 564
Score = 44 (20.5 bits), Expect = 3.1e-07, Sum P(4) = 3.1e-07
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 281 ASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQK 340
A+L A ++ Q AKV + ++ IV SS+ + +PPST L Q+
Sbjct: 322 AALTQAKNAQGQPAKVVTIQ-LQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQ 380
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 846 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 876
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 144 (55.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1134 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1193
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1194 RFSKPDS 1200
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 714 EDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 772
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 773 REFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 832
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 833 ILADEMGLGKTIQSIAFL 850
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 453 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 512
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS + +SK KS + VV + R ++ D ++ +P + R
Sbjct: 513 EEKPKKSKTAAASKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 564
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 846 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 876
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 144 (55.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1017 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1070
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1071 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1103
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1136 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1195
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1196 RFSKPDS 1202
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 716 EDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 774
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 775 REFKRIQSRHPELRRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 834
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 835 ILADEMGLGKTIQSIAFL 852
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 455 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 514
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS + +SK KS + VV + R ++ D ++ +P + R
Sbjct: 515 EEKPKKSKTAAASKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 566
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 848 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 878
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 144 (55.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 ---FS-FLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1135 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1194
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1195 RFSKPDS 1201
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 35/138 (25%), Positives = 57/138 (41%)
Query: 300 DDVEPISDS--DVDNIVGVGYSSEIEEMEPPS--TLK-CELRPYQKQALHWMVQLEKGRC 354
+D EP + +VD I+ +S + + EP +K C L PY+ +++G+
Sbjct: 714 EDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSL-PYEDSTWELKEDVDEGKI 772
Query: 355 LD-EAATTLHP-----------CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
+ + + HP W+ L E + L + E +
Sbjct: 773 REFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC 832
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +IA L
Sbjct: 833 ILADEMGLGKTIQSIAFL 850
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEGSEWW--FVGWGDVPAMSTSK-GRKLRR----GDEVT 121
E++ + N +AEAIA + G + + ++P++ + G K RR G+ +
Sbjct: 453 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK 512
Query: 122 FTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSR 174
P KS S +SK KS + VV + R ++ D ++ +P + R
Sbjct: 513 EEKPKKSKTSGTSKTKGKSKLNTITPVVG-KKRKRNTSSDNSDVEVMPAQSPR 564
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I+G L+I P++ + W +
Sbjct: 846 SIAFLQEVYNVGIHGPFLVIAPLSTITNWER 876
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 148 (57.2 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P+ + FQ+ E W+++TK+ L K L N +G + +LFSQ+T LD+LQ+ + N+
Sbjct: 745 PSINSFQLKDEP-WMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLK 803
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
FLR DG+ R+ ++ QF D +I
Sbjct: 804 FLRFDGSTQVDFRQDLIDQFYADESI 829
Score = 68 (29.0 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E+ + + ++ P +LRR KS + LP + +CE +E E+ Y+ +
Sbjct: 597 EQRVSRAKMMMAPFVLRRKKSQV------LDALPKKTRIIEFCEFSEEERRRYDDFASKQ 650
Query: 565 KVK--FDQFVEQGRILHNYASILE-------LLLRLRQCCDHPFL 600
V D+ V + + N A++ + +L++LR+ DHP L
Sbjct: 651 SVNSLLDENVMKTNLDTN-ANLAKKKSTAGFVLVQLRKLADHPML 694
Score = 67 (28.6 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 397 QMARGGILADAMGLGKTVMTIA 418
++ GILAD MGLGKT TIA
Sbjct: 403 ELKLAGILADEMGLGKTCQTIA 424
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 458 KEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
K ++++ L+ N ING L+I P + + W
Sbjct: 418 KTCQTIAFFSLLMDKN--INGPHLVIAPASTMENW 450
Score = 39 (18.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 542 MQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYAS-ILELLLRLRQCCDHPFL 600
+ VI+ E DF AL +V + + +L S +L+ L + + + F
Sbjct: 576 LDVIFTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDALPKKTRIIE--FC 633
Query: 601 VMSRGDTQDYSD 612
S + + Y D
Sbjct: 634 EFSEEERRRYDD 645
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 162 (62.1 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y
Sbjct: 455 EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYY 508
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 509 RAILEKN---FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 79 (32.9 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 581 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 640
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 641 RFCKPDS 647
Score = 60 (26.2 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +I L
Sbjct: 280 ILADEMGLGKTIQSITFL 297
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I+G LII P++ + W +
Sbjct: 305 IHGPFLIIAPLSTITNWER 323
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 257 QLREYQLEGMNWLL 270
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 162 (62.1 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y
Sbjct: 455 EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYY 508
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 509 RAILEKN---FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 79 (32.9 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 581 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 640
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 641 RFCKPDS 647
Score = 60 (26.2 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +I L
Sbjct: 280 ILADEMGLGKTIQSITFL 297
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I+G LII P++ + W +
Sbjct: 305 IHGPFLIIAPLSTITNWER 323
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 257 QLREYQLEGMNWLL 270
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 107 (42.7 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G +G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y+
Sbjct: 779 DNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVPLPARSCQLHRLKLSEDERAVYDVF 838
Query: 561 FKRSKVKFDQFV--EQGRILH 579
RS+ ++ ++GR H
Sbjct: 839 LARSRSALQSYLKRQEGRGSH 859
Score = 87 (35.7 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 40/160 (25%), Positives = 71/160 (44%)
Query: 271 LDSKDGCGLHASLLHANKSKV-QSAKVNDVDDV--EPISDSDVDNIVGVGYSSEIEEMEP 327
L + G + S +SKV ++A + V +P+ + +G + +E P
Sbjct: 438 LSPEQGTRENCSSQEPEQSKVTETAAAGPLHLVPPQPLPRPHIQPAASLGLKASRQET-P 496
Query: 328 PSTLKCELRPYQKQALH--WMVQLEKGRCLDEAATTLHPCWEAYRLLDER---ELVVYLN 382
+C + L+ W + E +DE +L C + ++ ++ + L+
Sbjct: 497 EGASQCSGGHTNEHRLYNVWKITSE---AIDELHRSLESCPGKTAVAEDPAGLKVPLLLH 553
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
A + + + Q +GGILAD MGLGKT+ IAL+LT
Sbjct: 554 QKQALAWLLWRES-QKPQGGILADDMGLGKTLTMIALILT 592
Score = 73 (30.8 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 457 KKEPKSLSIDKLIKQTNTLING-GTLIICPMTLLGQWNKLIQK 498
K++ +SL + L K +++ GTLI+CP +L+ W I+K
Sbjct: 600 KEKDRSLPVMWLSKNDSSVFTSTGTLIVCPASLIHHWKNEIEK 642
Score = 58 (25.5 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 584 ILELLLRLRQCCDHPFLVMS 603
+L LLRLRQCC H L+ S
Sbjct: 896 VLSQLLRLRQCCCHLSLLKS 915
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 103 (41.3 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
+E L+ + ILKP MLRR K +E L + ++C+LT ++ Y L R
Sbjct: 1009 NEDQLRRLHMILKPFMLRRVKKHVQQE------LGDKVEKDVFCDLTYRQRALYTNL--R 1060
Query: 564 SKVKFDQFVEQGRILHNYAS--ILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAK 618
++V +E+ + S ++ L+++ R+ C+HP L R +T+ L A+
Sbjct: 1061 NRVSIMDLIEKAAVGDETDSTTLMNLVMQFRKVCNHPDL-FERAETKSPFSLAHFAE 1116
Score = 94 (38.1 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 34/111 (30%), Positives = 53/111 (47%)
Query: 686 TPTSGLCPVCRKTIS---RQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGS 742
TP S L P+ + IS R I P+ RF D K K+ LL+EL+ G
Sbjct: 1287 TPYS-LPPMLPEPISTKGRYTHIEVPSMRRFVTDSGK----LAKLDELLRELK---AGGH 1338
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ +L+ Q T +DL++ L+ N + RLDG+ + R + F + +I
Sbjct: 1339 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDI 1389
Score = 72 (30.4 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 272 DSKDGCGLHASLLHANKSKVQSA--KVNDVDD-----VEPISDSDVD--NIVGVGYSSEI 322
D++D L + + +S VQ A + DD ++ + DS+++ N +G +I
Sbjct: 730 DAEDDTALRQAAMANAQSAVQKAQERARAFDDPNKSTMDTMDDSELNFQNPTSLG---DI 786
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E + P+ L +L+ YQ + L+W+V L E+G
Sbjct: 787 E-ISQPTMLTAKLKEYQLKGLNWLVNLYEQG 816
Score = 66 (28.3 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ +I+++
Sbjct: 819 GILADEMGLGKTIQSISVM 837
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488
L G+ + GI G ++D+ + K +S+S+ + + + I G L+I P +
Sbjct: 803 LKGLNWLVNLYEQGINGI-LADEMG--LGKTIQSISVMAYLAEVHN-IWGPFLVIAPAST 858
Query: 489 LGQWNKLIQK 498
L W + I K
Sbjct: 859 LHNWQQEITK 868
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 101 (40.6 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 31/111 (27%), Positives = 55/111 (49%)
Query: 689 SGLCPVCRKTISRQDLITA-PTGSRFQVDIEKN-----WVESTKIAVLLKELENLCLSGS 742
SGL + RK + DL + P + D ++ W S K+ V+ L+ G
Sbjct: 793 SGLVAL-RKICNHPDLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVVESLLKIWHKQGQ 851
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ +LFSQ LD+L++ L +L++DGT R+ ++ +++ED +I
Sbjct: 852 RVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSI 902
Score = 98 (39.6 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR KS L LP + QV++C LTE + Y+ F SK
Sbjct: 729 VLRDTINPYLLRRMKSDVKMS----LSLPDKNEQVLFCRLTEEQHKVYQN-FIDSK---- 779
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
E RIL+ I L+ LR+ C+HP L
Sbjct: 780 ---EVYRILNGDMQIFSGLVALRKICNHPDL 807
Score = 71 (30.1 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 401 GGILADAMGLGKTVMTIALL--LTHSQ 425
GGIL D MGLGKT+ IA L L++S+
Sbjct: 523 GGILGDEMGLGKTIQIIAFLAGLSYSK 549
Score = 57 (25.1 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G T+I+CP T++ QW K
Sbjct: 563 GPTIIVCPTTVMHQWVK 579
Score = 45 (20.9 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 51 KTPEIKPLAAR---RKLIISKENEIRASSENGTLAEAIAEG 88
K E+ P+ R +K ++ +ENE S +G AEA G
Sbjct: 401 KDYELNPMLKRWKRQKKVMVQENEDDFSPSSGEEAEAACGG 441
Score = 43 (20.2 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 331 LKCELRPYQKQALHWM--VQLEKGR 353
LK ++ QK+ALH+ V L KG+
Sbjct: 335 LKKHIKKLQKRALHFQGRVGLPKGK 359
Score = 42 (19.8 bits), Expect = 4.3e-10, Sum P(6) = 4.3e-10
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
+E ++ + P L +L YQ+ + W+ +L
Sbjct: 488 AEFDDFKMPGFLFRKLFKYQQTGVRWLWEL 517
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 373 DERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGI 432
D++E+ + G +E + G A A G V L H R + +
Sbjct: 30 DKQEMTIKQED-DGNMEVEESLPSCSSANGPSASAEGRSSEVPKRGPALLHIDRHQIQTV 88
Query: 433 QSASQPSD-GGIEGYDISDQ 451
+ ++Q + G+ G D+ DQ
Sbjct: 89 EPSAQALELQGL-GVDVYDQ 107
>UNIPROTKB|H7C2W2 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 EMBL:AL356599
EMBL:AL451145 HGNC:HGNC:19336 Ensembl:ENST00000433355 Bgee:H7C2W2
Uniprot:H7C2W2
Length = 449
Score = 185 (70.2 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 47/137 (34%), Positives = 76/137 (55%)
Query: 298 DVDDVEPISDS-DVDNI---VGVGYSSEIE----EMEPPSTLKCELRPYQKQALHWMVQL 349
D DD E + D+D + V + E + +++ P+ + LRPYQ++A++WM+Q
Sbjct: 238 DEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPALIPV-LRPYQREAVNWMLQQ 296
Query: 350 EKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
E R + LH W ++ L +Y N ++G E+P++ GGILAD MG
Sbjct: 297 ECFRSSPATESALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMG 354
Query: 410 LGKTVMTIALLLTHSQR 426
LGKTV +AL+LTH+++
Sbjct: 355 LGKTVEVLALILTHTRQ 371
Score = 37 (18.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 593 QCCDHPFLVMSRGDTQDYSDLNKLAKR 619
QC +PF D D + N+ KR
Sbjct: 416 QCPPYPFTFSYTCDDTDSCERNEWKKR 442
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 121 (47.7 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 719 KNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQ 778
KN S K++ ++ LENL G + ++FSQ L+L+Q L+ N FLR+DGT
Sbjct: 726 KNDSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAP 785
Query: 779 QREKVLKQFSE 789
R K +++F E
Sbjct: 786 DRLKTVEEFQE 796
Score = 87 (35.7 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 29/96 (30%), Positives = 43/96 (44%)
Query: 509 KLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKF 568
K ++ ++P LRR KS + L D V++ LT ++ YEA F S++
Sbjct: 601 KNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEA-FLNSEIVL 659
Query: 569 DQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
F G S L L L++ CDHP L+ R
Sbjct: 660 SAF--DG-------SPLAALTILKKICDHPLLLTKR 686
Score = 74 (31.1 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 36/136 (26%), Positives = 63/136 (46%)
Query: 293 SAKVNDVDDVEPISDSDVDNIVGVGY-SSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
+AK+ D+D+ D D D ++ G ++E++ +P + + Y +++L
Sbjct: 305 AAKLRDLDE----DDDDDDCLILSGKKAAEMKINKPARSYNAKRHGYDERSLE------- 353
Query: 352 GRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLG 411
DE + TL +Y L + ++Y + G + T +GGIL D MGLG
Sbjct: 354 ----DEGSITLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHT--QGKGGILGDDMGLG 407
Query: 412 KTVMTIALL--LTHSQ 425
KT+ + L L HS+
Sbjct: 408 KTMQICSFLAGLFHSK 423
Score = 68 (29.0 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 29/95 (30%), Positives = 39/95 (41%)
Query: 401 GGILADAMGLGKTVM-TIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKE 459
G I + L T+ IA +L QR GL+ + S GGI G D+ +
Sbjct: 356 GSITLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSF 415
Query: 460 PKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
L KLIK+ L++ P TLL W K
Sbjct: 416 LAGLFHSKLIKRA--------LVVAPKTLLPHWMK 442
Score = 48 (22.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 366 WEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402
W+ Y +LDE L+ N ++ +E PS+ ++ G
Sbjct: 509 WD-YMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISG 544
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 124 (48.7 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 38/130 (29%), Positives = 64/130 (49%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDRE-GRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
DE+ L+ + ILKP MLRR K + E G + + D +YC+LT +K Y+ L
Sbjct: 883 DEQQLRRLHMILKPFMLRRIKKNVQSELGDKVEI----D---VYCDLTTRQKKLYQQLRS 935
Query: 563 RSKVKFDQFVE-QGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKR-- 619
+ + +E + + +S+ L+++ R+ C+HP L R D K A+
Sbjct: 936 QISMSDTDLLELESNSTSSDSSLANLVMQFRKVCNHPDL-FERADVNSPFSFGKFAETGS 994
Query: 620 FLKGSSNALE 629
FL+ +N L+
Sbjct: 995 FLR-ETNELD 1003
Score = 71 (30.1 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
ES K+A L + L +L G + +++ Q T + + + L+ + ++RLDG+ + R +
Sbjct: 1234 ESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRRE 1293
Query: 783 VLKQFSEDNNI 793
+++ + + I
Sbjct: 1294 MVQAWQTNPEI 1304
Score = 69 (29.3 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKTV +I++L
Sbjct: 693 GILADEMGLGKTVQSISVL 711
Score = 65 (27.9 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 328 PSTLKCELRPYQKQALHWMVQL-EKG 352
P+ LKC L+ YQ + L+W+ L E+G
Sbjct: 665 PNMLKCTLKEYQLKGLNWLANLYEQG 690
Score = 49 (22.3 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488
L G+ + + GI G ++D+ + K +S+S+ + +T + G L++ P +
Sbjct: 677 LKGLNWLANLYEQGINGI-LADEMG--LGKTVQSISVLAYLAETYNMW-GPFLVVTPAST 732
Query: 489 LGQWNKLIQK 498
L W + I K
Sbjct: 733 LHNWQQEITK 742
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 98 (39.6 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 27/107 (25%), Positives = 55/107 (51%)
Query: 502 EGDERGLKLV----QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
EG E+ K V ++L+P +LRR K +++ LP VI+C L++ +++ Y
Sbjct: 734 EGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQ------LPSKHEHVIFCRLSKRQRNLY 787
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
E ++ + + G ++ ++ ++++LR+ C+HP L R
Sbjct: 788 EDFIASTETQAT--LTSG----SFFGMISIIMQLRKVCNHPDLFEGR 828
Score = 95 (38.5 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 26/103 (25%), Positives = 56/103 (54%)
Query: 691 LCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQW 750
L P+ + RQ + P Q D K ++A+LL++L+ G ++++F+Q
Sbjct: 1050 LSPIRPAIVRRQ--VYFPDRRLIQFDCGK----LQELAMLLRKLK---FGGHRALIFTQM 1100
Query: 751 TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
T LD+L+ ++ ++RLDG+ ++R+ ++++F+ + I
Sbjct: 1101 TKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKI 1143
Score = 83 (34.3 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+MTIALL
Sbjct: 557 GILADEMGLGKTIMTIALL 575
Score = 61 (26.5 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 294 AKVNDVDDVEPISDSDVD----NIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
A+ ND D + I+D+ G YS+ + P LK LR YQ L W+V +
Sbjct: 491 AEDNDKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTM 550
Query: 350 -EK 351
EK
Sbjct: 551 YEK 553
Score = 39 (18.8 bits), Expect = 8.3e-08, Sum P(4) = 8.3e-08
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 304 PISDSDVDNIVGVG 317
P+ D + DN+ VG
Sbjct: 291 PVKDENQDNLASVG 304
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 111 (44.1 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 714 QVDIEKNWV-ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLD 772
Q +EK + +S K +L K L ++ G + +LFSQ+T LD++++ L + ++RLD
Sbjct: 819 QYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLD 878
Query: 773 GTLNQQQREKVLKQFSEDNNI 793
G +R ++ +F+ D +I
Sbjct: 879 GKTQISERIHLIDEFNTDMDI 899
Score = 91 (37.1 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 512 QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQF 571
+ I+KP +LRR KS ++ LPP ++ +C++++ ++ Y L + K D
Sbjct: 689 KQIMKPFILRRVKSEVLKQ------LPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSIDA- 741
Query: 572 VEQGRILHNYASILELLLRLRQCCDHPFL 600
E+ L N +++ LR+ +HP L
Sbjct: 742 TEKNSELCN------VMMHLRKMANHPLL 764
Score = 68 (29.0 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 29/76 (38%), Positives = 36/76 (47%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPS---DGGIEGYDISDQSPNLM--- 456
ILAD MGLGKTV IA L H G SG P+ D I ++ S N++
Sbjct: 496 ILADEMGLGKTVQAIAFL-AHLYVTGDSGPHLVVVPASTMDNWIREFNQWCPSMNILLYY 554
Query: 457 --KKEPKSLSIDKLIK 470
++E K L D L K
Sbjct: 555 GSQEERKHLRYDILNK 570
Score = 55 (24.4 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 325 MEPPSTLK--CELRPYQKQALHWMVQLEK 351
+E PS + L+PYQK L+W+ L K
Sbjct: 462 IEQPSIMSENLVLKPYQKIGLNWLALLHK 490
Score = 51 (23.0 bits), Expect = 3.6e-06, Sum P(5) = 3.6e-06
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 550 TEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH-PFLVMSRGDTQ 608
++A+ + +F++ ++ + + + IL S E+L +L D F MS+ Q
Sbjct: 669 SKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKS--EVLKQLPPKQDKIKFCQMSKKQEQ 726
Query: 609 DYSDL-NKLAK 618
YSDL NKL K
Sbjct: 727 LYSDLLNKLKK 737
Score = 43 (20.2 bits), Expect = 7.7e-09, Sum P(5) = 7.7e-09
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 334 ELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYL 381
ELRP+ W EK + + L W+ L+ ERE+V+ L
Sbjct: 393 ELRPFSS----WESLFEKMTKSNGLSEDL--IWDCQTLIKEREVVMKL 434
Score = 38 (18.4 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 67 SKENEIRASSENGTLAEAIAEGYSEGSE 94
+ +N +A ++NG + + YSE ++
Sbjct: 300 ANQNSNKAMAQNGVKKKGKGKKYSENAK 327
Score = 38 (18.4 bits), Expect = 5.9e-10, Sum P(5) = 5.9e-10
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 288 KSKVQSAKVNDVDDVEPI-SDSDVDNIVGVGYSSEIEEME 326
K ++AK D D+E S SD + + YSS E++E
Sbjct: 320 KKYSENAK-RDTRDLESEESASDAGSCLDEDYSSGDEKLE 358
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 95 (38.5 bits), Expect = 6.4e-10, Sum P(5) = 6.4e-10
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K + L G K +++SQ+ LDL++ N+ R+DG++N + R+
Sbjct: 602 SGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQ 661
Query: 784 LKQFSEDNN 792
L++F+ +
Sbjct: 662 LEKFNSSKD 670
Score = 85 (35.0 bits), Expect = 6.4e-10, Sum P(5) = 6.4e-10
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 493 NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
NKLI +E + + + +ILKP +LRR K +LPP +I C +T A
Sbjct: 430 NKLIN---DELQKNLISNLHTILKPFLLRRLKKVVLAN-----ILPPKREYIINCPMTSA 481
Query: 553 EKDFYEALFKRSKVKFDQFVE 573
++ FY+A K+K F E
Sbjct: 482 QEKFYKAGLN-GKLKKTMFKE 501
Score = 75 (31.5 bits), Expect = 6.4e-10, Sum P(5) = 6.4e-10
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKTV +IALL
Sbjct: 243 GILADEMGLGKTVQSIALL 261
Score = 68 (29.0 bits), Expect = 6.4e-10, Sum P(5) = 6.4e-10
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWM 346
+ SK + K + D + D G + +P C L+PYQ + L+W+
Sbjct: 174 HSSKKRKTKKKSITDFFKKQKKNEDTTTQNGAPDDAAIKQPRLLKNCILKPYQLEGLNWL 233
Query: 347 VQL-EKG 352
+ L E G
Sbjct: 234 ITLYENG 240
Score = 37 (18.1 bits), Expect = 6.4e-10, Sum P(5) = 6.4e-10
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 102 DVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKD 161
D + S +L D T + LK N + S + A + +E+ +TKD
Sbjct: 106 DTKSEQKSLDDELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLLHRSNEVANANTKD 165
Score = 37 (18.1 bits), Expect = 4.1e-07, Sum P(4) = 4.1e-07
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 286 ANKSKVQSAKVNDVD-DVEPISDSDVDN 312
+N + +VND+ D+ SDSD+D+
Sbjct: 29 SNGVNYREKEVNDLTADISD-SDSDLDS 55
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(5) = 0.00022
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 608 QDYSDLNKLAKRFLKGSSN 626
+D+ DLN A + GS N
Sbjct: 636 EDWCDLNSFATFRIDGSVN 654
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 102 (41.0 bits), Expect = 7.2e-10, Sum P(4) = 7.2e-10
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 689 SGLCPVCRKTISRQDLITA-PT------GSRFQVDIEKNWVESTKIAVLLKELENLCLSG 741
SGL + RK + DL + P G + D W S K+ V+ L+ G
Sbjct: 786 SGLVAL-RKICNHPDLFSGGPKNFKGIPGEELEEDQFGYWKRSGKMIVVESLLKIWHKQG 844
Query: 742 SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ +LFSQ LD+L++ L +L++DGT R+ ++ +++ED +I
Sbjct: 845 QRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASI 896
Score = 96 (38.9 bits), Expect = 7.2e-10, Sum P(4) = 7.2e-10
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR KS L LP + QV++C LT+ + Y+ F SK
Sbjct: 722 VLRDTINPYLLRRMKSDVKMS----LSLPDKNEQVLFCRLTDEQHKVYQN-FIDSK---- 772
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
E RIL+ I L+ LR+ C+HP L
Sbjct: 773 ---EVYRILNGEMQIFSGLVALRKICNHPDL 800
Score = 75 (31.5 bits), Expect = 7.2e-10, Sum P(4) = 7.2e-10
Identities = 38/151 (25%), Positives = 68/151 (45%)
Query: 286 ANKSKVQSAKVNDVDD-VEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALH 344
+++ + + V D+DD P S + + G G ++ Y KQ L
Sbjct: 401 SHRKRQKKVTVQDIDDDFFPSSGEEAEGTGGGGGGRKVARCRDDGD-----EDYYKQRLR 455
Query: 345 -W-MVQLE-KGRCL---DEAATTLHPCWEAYRLLDERELVVYLNAFSGEAT-IEFPSTLQ 397
W ++L+ K +CL D++ + E +++ ++ F + T + + L
Sbjct: 456 RWNKLRLQDKEKCLKLEDDSEESDAEFDEGFKMPG----FLFKKLFKYQQTGVRWLWELH 511
Query: 398 MAR-GGILADAMGLGKTVMTIALL--LTHSQ 425
+ GGIL D MGLGKT+ IA L L++S+
Sbjct: 512 CQQAGGILGDEMGLGKTIQIIAFLAGLSYSK 542
Score = 57 (25.1 bits), Expect = 7.2e-10, Sum P(4) = 7.2e-10
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G T+I+CP T++ QW K
Sbjct: 556 GPTIIVCPTTVMHQWVK 572
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 158 (60.7 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 61/246 (24%), Positives = 115/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 215 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 274
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 275 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 328
Query: 481 LIICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L G++ E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 329 ELFSLLHFLEPGRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 383
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 384 -LAPKEETIIEVELTNIQKKYYRAILEKN---F-AFLSKGGGQANVPNLLNTMMELRKCC 438
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 439 NHPYLI 444
Score = 86 (35.3 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 477 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 536
Query: 786 QFSEDNN 792
+FS ++
Sbjct: 537 RFSRPDS 543
Score = 37 (18.1 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 153 KLREYQLEGVNWLL 166
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 118 (46.6 bits), Expect = 8.5e-10, Sum P(5) = 8.5e-10
Identities = 50/180 (27%), Positives = 81/180 (45%)
Query: 549 LTEAEKDFYEALFKRSKV--KFDQFVEQGRILHNYASILELLLRLRQCCDH--PFLVMSR 604
LT+ K+ + +++K+ ++ VE R N + LE +L+Q D P+ S
Sbjct: 961 LTKVLKNVTDISTEQTKIASNLEREVEMFRDTMN--NRLEYYRQLQQISDTVAPYDEEST 1018
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRA-YVQEVVEELQKGEQGE-CPICLEA 662
G D L L+ A+E + + ++ Y+ + +E E + C IC
Sbjct: 1019 GKPLDRG----LFAEKLE-QEKAMEEKISSLKAKGRYLIHLRDETSPDENSKICIICQGT 1073
Query: 663 FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL--ITAPTGSRFQVDIEKN 720
FE VLT C H+ C++CL W+ + CPVC+K + D IT F V EK+
Sbjct: 1074 FEIGVLTVCGHKYCKDCLRLWWRQHRT--CPVCKKRLGANDFYQITYKP-QEFVVQEEKS 1130
Score = 81 (33.6 bits), Expect = 8.5e-10, Sum P(5) = 8.5e-10
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 332 KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYR--LLDERELVVYLNA---FSG 386
+CEL P+Q++A+ W++ E G+ L+ + P + L D + + + F+
Sbjct: 198 ECELFPFQRRAVRWLLNRE-GKELNSNGQVV-PLENRSKIGLPDSFQQITDADGKVCFAS 255
Query: 387 EATIEFPSTL-------QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPS 439
+ L + +GG+LA+ MGLGKTV I+L+ + R L ++ ++P
Sbjct: 256 HLYMVVTRDLSGWYNVNEHLKGGVLAEEMGLGKTVEMISLMCLN--RRILRPEETFAEPG 313
Query: 440 DGGI 443
G+
Sbjct: 314 SNGL 317
Score = 60 (26.2 bits), Expect = 8.5e-10, Sum P(5) = 8.5e-10
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 477 NGGTLIICPMTLLGQWNKLIQ 497
+G TLII P +LGQW + I+
Sbjct: 320 SGATLIITPPVILGQWKQEIE 340
Score = 57 (25.1 bits), Expect = 8.5e-10, Sum P(5) = 8.5e-10
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 741 GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLD 772
G++SI+FSQ+ FLD L R I + +D
Sbjct: 1185 GAQSIVFSQYKGFLDYLANAFRRFKIGYSSVD 1216
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 65 IISKENEIRASSENGTLAEAIAEGYSEGS--EW 95
++ + NE++ + G+L AIAE S GS EW
Sbjct: 913 VMKRRNEVKPGPDLGSLRGAIAELRSLGSSLEW 945
Score = 53 (23.7 bits), Expect = 8.5e-10, Sum P(5) = 8.5e-10
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 509 KLVQSILKPIMLRRTKSSTDREG----RPILVLPPADMQVIYCELTEAEKDFYEALFK 562
+L + KP++ R + T R R L LPP VI T E+ Y L++
Sbjct: 479 RLCDATFKPVLARIVNTITLRHSKNFIREELHLPPQKRIVITVPFTAVEEQSYRQLYE 536
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 148 (57.2 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 35/104 (33%), Positives = 61/104 (58%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y
Sbjct: 1110 EFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYY 1163
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1164 RAILEKN---FS-FLAKGAGQANVPNLLNTMMELRKCCNHPYLI 1203
Score = 78 (32.5 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L + G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1236 KLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1295
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1296 RFSKPDS 1302
Score = 66 (28.3 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 400 RGGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
R ILAD MGLGKT+ +I L R G+ G
Sbjct: 932 RNCILADEMGLGKTIQSITFL-EEIYRTGIKG 962
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + T I G LII P++ + W +
Sbjct: 948 SITFLEEIYRTGIKGPFLIIAPLSTIANWER 978
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 103 (41.3 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 689 SGLCPVCRKTISRQDLITA-PTGSRFQVD--IEKN----WVESTKIAVLLKELENLCLSG 741
SGL + RK + DL + P + D +E++ W S K+ V+ L+ G
Sbjct: 797 SGLIAL-RKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQG 855
Query: 742 SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ +LFSQ LD+L++ L +L++DGT R+ ++ +++ED +I
Sbjct: 856 QRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI 907
Score = 98 (39.6 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR KS L LP + QV++C LT+ + Y+ F SK
Sbjct: 733 VLRDTINPYLLRRMKSDVKMS----LSLPDKNEQVLFCRLTDEQHKVYQN-FVDSK---- 783
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
E RIL+ I L+ LR+ C+HP L
Sbjct: 784 ---EVYRILNGEMQIFSGLIALRKICNHPDL 811
Score = 71 (30.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 401 GGILADAMGLGKTVMTIALL--LTHSQ 425
GGIL D MGLGKT+ IA L L++S+
Sbjct: 527 GGILGDEMGLGKTIQIIAFLAGLSYSK 553
Score = 56 (24.8 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G T+I+CP T++ QW K
Sbjct: 567 GPTVIVCPTTVMHQWVK 583
Score = 53 (23.7 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 26/144 (18%), Positives = 62/144 (43%)
Query: 365 CWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHS 424
C ++ + + E+ + + G+ +E + + G+ A+G L H
Sbjct: 17 CLQSQPVSNNEEMAIKQES-GGDGEVEEYLSFRSVGDGLSTSAVGCASAAPRRGPALLHI 75
Query: 425 QRGGLSGIQSASQPSD--G-GIEGYD-------ISDQSPNLMKKEPKSLSIDKLIKQTNT 474
R + ++ ++Q + G G++ YD + Q N + + ++ + + K+ +
Sbjct: 76 DRHQIQAVEPSAQALELQGLGVDVYDQDVLEQGVLQQVDNAIHEASRASQLVDVEKEYRS 135
Query: 475 LINGGTLIICPMTLLGQWNKLIQK 498
+++ L C T L Q NK+I++
Sbjct: 136 VLDD--LTSCT-TSLRQINKIIEQ 156
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 122 (48.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 34/120 (28%), Positives = 62/120 (51%)
Query: 490 GQWNKL--IQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIY 546
G++N L Q + + E +K + IL+P MLRR K+ + +PP ++
Sbjct: 458 GKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKS------MPPKSEFIVR 511
Query: 547 CELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGD 606
EL+ +K FY+ + ++ +Q GR+ S+L +++ LR+CC+HP+L S +
Sbjct: 512 VELSSMQKKFYKHILTKNFKALNQ-KGGGRV----CSLLNIMMDLRKCCNHPYLFPSAAE 566
Score = 86 (35.3 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L+ L + +LFSQ T L++L+ L + R+DG++ R+K
Sbjct: 585 SGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKA 644
Query: 784 LKQFSE 789
+ +F++
Sbjct: 645 IDRFND 650
Score = 67 (28.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSG 431
ILAD MGLGKT+ T+ L + + G G
Sbjct: 289 ILADEMGLGKTIQTVVFLYSLFKEGHCRG 317
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 711 SRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770
S F++D+++ ++S K VL + L +L G + +LFSQ+T LD+L++ L ++R
Sbjct: 778 SDFKLDMDQI-LDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIR 836
Query: 771 LDGTLNQQQREKVLKQFSEDNNI 793
LDG R ++ +F+ D +I
Sbjct: 837 LDGKTQISDRIHLIDEFNTDMDI 859
Score = 73 (30.8 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 28/104 (26%), Positives = 49/104 (47%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDF 556
Q YE+ ER + + I+KP +LRR K ++ LPP + C ++E ++
Sbjct: 637 QSTYEK--ER-IAHAKQIIKPFILRRVKDEVLKQ------LPPKKDHIELCAMSEKQEQL 687
Query: 557 YEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
Y L + K K + E+ + N +++LR+ +HP L
Sbjct: 688 YCDLLNKLK-KTMKGNEKNSDMGN------AMMQLRKMANHPLL 724
Score = 72 (30.4 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA L Q G
Sbjct: 454 GILADEMGLGKTIQAIAFLAHIYQEG 479
Score = 65 (27.9 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 325 MEPPSTLK--CELRPYQKQALHWMVQLEK 351
+E PS L EL+PYQK L+W+ L K
Sbjct: 421 IEQPSVLNQSLELKPYQKIGLNWLALLHK 449
Score = 46 (21.3 bits), Expect = 5.6e-07, Sum P(4) = 5.6e-07
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 586 ELLLRLRQCCDHPFL-VMSRGDTQDYSDL-NKLAKRFLKGS 624
E+L +L DH L MS Q Y DL NKL K+ +KG+
Sbjct: 663 EVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKL-KKTMKGN 702
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
D+ K ++ IL MLRRTKS G LVLPP + L +K Y ++ ++
Sbjct: 266 DKETYKSLKFILGAFMLRRTKSLLIESGN--LVLPPLTELTVMVPLVSLQKKIYTSILRK 323
Query: 564 SKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ G N+ S+ ++++LR+ C HP+L
Sbjct: 324 ELPGLLELSSGGS---NHTSLQNIVIQLRKACSHPYL 357
Score = 101 (40.6 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL + L+ L SG + +LFSQ T+ LD+LQ + + RLDG++ ++R
Sbjct: 376 SGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAA 435
Query: 784 LKQFS 788
+K FS
Sbjct: 436 IKNFS 440
Score = 59 (25.8 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 406 DAMGLGKTVMTIALLLTHSQRGGLSG---IQSASQPSDGGIEGYDISDQSPNL 455
D MGLGKT+ I+ L R GL G + +DG + +I+ +PNL
Sbjct: 77 DQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVS--EINRFTPNL 127
Score = 41 (19.5 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 335 LRPYQKQALHWMVQ 348
L+P+Q + + W++Q
Sbjct: 51 LKPHQVEGVSWLIQ 64
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 478 GGTLIICPMTLLGQW 492
G L++CP+++ W
Sbjct: 102 GPFLVLCPLSVTDGW 116
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 117 (46.2 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 31/109 (28%), Positives = 57/109 (52%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+LT +K Y+AL +
Sbjct: 728 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQLTSRQKLLYQAL--K 779
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + + +S++ L+++ R+ C+HP L R +T
Sbjct: 780 NKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL-FERQET 827
Score = 80 (33.2 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 539 GILADEMGLGKTVQSIALLAHLAERENIWG 568
Score = 80 (33.2 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1099 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1158
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1159 MVADFQNRNDI 1169
Score = 49 (22.3 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 506 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 536
Score = 41 (19.5 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 523 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 577
Query: 488 LLGQWNK 494
L W++
Sbjct: 578 TLNNWHQ 584
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 98 (39.6 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 497 QKPYEEGDERGLKLVQ---SILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
Q+ E +E L +++ +L+P +LRR K +++ LP +VI C+L+ +
Sbjct: 669 QEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKD------LPDKVEKVIKCKLSGLQ 722
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ Y+ + K + + F +G + +++LR+ C+HPF+
Sbjct: 723 QQLYQQMLKHNAL-FVGAGTEGATKGGIKGLNNKIMQLRKICNHPFV 768
Score = 84 (34.6 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K +L + L SG + ++F Q T +D+++ L ++ ++RLDG+ ++R ++L
Sbjct: 792 KFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLN 851
Query: 786 QFS 788
F+
Sbjct: 852 AFN 854
Score = 73 (30.8 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 282 SLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEM--EPPSTLKC-ELRPY 338
SL A +++ AK+ ++V+PI+D + + + I+E + PS L L+ Y
Sbjct: 414 SLSEAVRAQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKEKIDKQPSILVGGTLKEY 473
Query: 339 QKQALHWMVQL 349
Q + L WMV L
Sbjct: 474 QLRGLEWMVSL 484
Score = 69 (29.3 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ +I+L+
Sbjct: 491 GILADEMGLGKTIQSISLI 509
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 118 (46.6 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P F++D E+ S K +L + L L G K ++FSQ T+ LD+L N
Sbjct: 566 PVTQEFKID-EELVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFI 624
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ +REK + F+ D ++
Sbjct: 625 FSRLDGSMSYSEREKNIYSFNTDPDV 650
Score = 77 (32.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L ++ FY A+
Sbjct: 413 KEREQNVLHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLCNKQEIFYTAI 466
Query: 561 FKRS 564
R+
Sbjct: 467 VNRT 470
Score = 76 (31.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKTV IA + QRG
Sbjct: 227 GILADEMGLGKTVQCIATIALMIQRG 252
Score = 60 (26.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/60 (21%), Positives = 35/60 (58%)
Query: 546 YCELTEAEKDFYEALFK-RSKVKFDQFVEQGRI-LHNYASIL--ELLLRLRQCCDHPFLV 601
Y EL + + + + + + +V ++ V +G I + + ++ +++ LR+CC+HP+++
Sbjct: 501 YSELDQFPSELEKLISQIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPYMI 560
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 107 (42.7 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 24/100 (24%), Positives = 52/100 (52%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
++ +E + + ++L+P +LRR K +++ +PP ++ C ++ +K YE
Sbjct: 982 DDVNEDIINRLHAVLRPFLLRRLKKDVEKQ------MPPKHTHIVPCSMSRRQKFLYEEF 1035
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
S + + G ++ SI+ +L++LR+ C+HP L
Sbjct: 1036 INSSSTQ--STLSSG----SFFSIINILMQLRKVCNHPDL 1069
Score = 95 (38.5 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
++A+LL+ L+ G ++++F+Q T LD+ + L+ + +LRLDG+ +R+ + +
Sbjct: 1383 QLAILLRRLKQ---QGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTE 1439
Query: 786 QFSEDNNI 793
+F+ D I
Sbjct: 1440 RFNTDPKI 1447
Score = 81 (33.6 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPS 439
GILAD MGLGKT+MTI+L+ + + G+ G PS
Sbjct: 802 GILADEMGLGKTIMTISLIAYLAVQKGVWGPHLIVVPS 839
Score = 54 (24.1 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 297 NDVDDVEPISDSDVDNIVG--------VGYSSEIEEMEP--PSTLKCELRPYQKQALHWM 346
N+ ++ IS D+ NIV G++ + P LK LR YQ L W+
Sbjct: 733 NNNNNENSISTKDIINIVSKKANSSQPTGFTLNTSNVRTKVPFLLKFPLREYQHIGLDWL 792
Query: 347 VQL-EK 351
V L EK
Sbjct: 793 VSLYEK 798
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 117 (46.2 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 31/109 (28%), Positives = 57/109 (52%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+LT +K Y+AL +
Sbjct: 724 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQLTSRQKLLYQAL--K 775
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + + +S++ L+++ R+ C+HP L R +T
Sbjct: 776 NKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL-FERQET 823
Score = 80 (33.2 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 541 GILADEMGLGKTVQSIALLAHLAERENIWG 570
Score = 78 (32.5 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1096 DSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1155
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1156 MVADFQTRNDI 1166
Score = 49 (22.3 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 508 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 538
Score = 41 (19.5 bits), Expect = 6.3e-05, Sum P(3) = 6.3e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 525 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 579
Query: 488 LLGQWNK 494
L W++
Sbjct: 580 TLNNWHQ 586
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 105 (42.0 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 673 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 725
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 726 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 770
Score = 101 (40.6 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 792 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 851
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 852 LDHFNADGS 860
Score = 65 (27.9 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 508 ILADEMGLGKTIQTISFL 525
Score = 46 (21.3 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 25/101 (24%), Positives = 39/101 (38%)
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEI----EEMEPP 328
+KD S LH+N S +++ D S+S+ + G G+ SE E E
Sbjct: 3 NKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY 369
S + E + Q + + EK E + WE Y
Sbjct: 63 SESESESAGSKSQPVLPEAK-EKPASKKERIADVKKMWEEY 102
Score = 43 (20.2 bits), Expect = 6.1e-09, Sum P(4) = 6.1e-09
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 485 ELRDYQLEGLNWL 497
Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 457 TRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSW 501
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 95 (38.5 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 716 DIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
+I + +E++ K+ +L K L L G + +LFSQ T LD+LQ L + R+DG+
Sbjct: 339 EIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGS 398
Query: 775 LNQQQREKVLKQFSE 789
+ ++R +K F +
Sbjct: 399 VRGEERHLAIKNFGQ 413
Score = 92 (37.4 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
E+ E +L + +L+P +LRR K+ E LP VIY ++ +K +Y+A+
Sbjct: 243 EKESESASELYK-LLQPFLLRRVKAEVATE------LPRKTEVVIYHGMSALQKKYYKAI 295
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + + L N +L +LR+C DHP+L
Sbjct: 296 LMKDLDAFENEMAKKVKLQN------VLSQLRKCVDHPYL 329
Score = 65 (27.9 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
G IL D MGLGKT TIAL +
Sbjct: 68 GCILGDEMGLGKTCQTIALFI 88
Score = 51 (23.0 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 335 LRPYQKQALHWMVQ 348
LRPYQ Q ++W+ Q
Sbjct: 48 LRPYQLQGVNWLAQ 61
Score = 50 (22.7 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G LI+CP+++L W + +++
Sbjct: 98 GPFLILCPLSVLSNWKEEMER 118
Score = 41 (19.5 bits), Expect = 0.00048, Sum P(5) = 0.00048
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 624 SSNALEGEDKDVPSRAYVQEVVEELQKGEQ 653
SS LE ED D S YV V Q G +
Sbjct: 702 SSAQLEYEDPDSTSIRYVSGDVTHPQAGAE 731
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 97 (39.2 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +L+ N +LRLDGT + R +
Sbjct: 1051 SGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAML 1110
Query: 784 LKQFSEDNN 792
LK+F+E+ +
Sbjct: 1111 LKKFNEEGS 1119
Score = 81 (33.6 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 18/93 (19%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 937 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSAIQKVLYRHMQGKGILL 990
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++L++ C+HP++
Sbjct: 991 TDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYM 1023
Score = 74 (31.1 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQP-SDGGIEGYDISDQSPNLMK 457
GILAD MGLGKT+ TI L+ + L+G P S Y++ +P+++K
Sbjct: 747 GILADEMGLGKTIQTIGLITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVK 803
Score = 72 (30.4 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 286 ANKSKVQSAKVNDVDDV--EPISDSDVDNIVGVGYSSEIEEMEPPST--LKCELRPYQKQ 341
A K ++SAK DVDD + + GV ++ IE ++ ST + L+ YQ Q
Sbjct: 675 AAKHIIESAK-QDVDDEYSSQAGQTSSQSYYGVAHAV-IERVDKQSTFLINGTLKQYQIQ 732
Query: 342 ALHWMVQL 349
L WMV L
Sbjct: 733 GLEWMVSL 740
Score = 45 (20.9 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 476 INGGTLIICPMTLLGQW 492
+NG LII P++ L W
Sbjct: 774 LNGPYLIIVPLSTLSNW 790
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 115 (45.5 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + + YC+LT +K Y+AL +
Sbjct: 730 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LTYCQLTSRQKLLYQAL--K 781
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + + +S++ L+++ R+ C+HP L R +T
Sbjct: 782 NKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL-FERQET 829
Score = 80 (33.2 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 541 GILADEMGLGKTVQSIALLAHLAERENIWG 570
Score = 79 (32.9 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1102 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1161
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1162 MVADFQTRNDI 1172
Score = 49 (22.3 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 508 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 538
Score = 41 (19.5 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 525 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 579
Query: 488 LLGQWNK 494
L W++
Sbjct: 580 TLNNWHQ 586
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 442 GIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLIN 477
G +G P ++ ++L +D ++QT+ + N
Sbjct: 8 GDDGSSTELAKPLYLQYLERALRLDHFLRQTSAIFN 43
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 114 (45.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+LT +K Y+AL +
Sbjct: 731 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQLTSRQKLLYQAL--K 782
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + +S++ L+++ R+ C+HP L R +T
Sbjct: 783 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL-FERQET 830
Score = 80 (33.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 542 GILADEMGLGKTVQSIALLAHLAERENIWG 571
Score = 80 (33.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1103 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1162
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1163 MVADFQNRNDI 1173
Score = 49 (22.3 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 509 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 539
Score = 41 (19.5 bits), Expect = 8.3e-05, Sum P(3) = 8.3e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 526 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 580
Query: 488 LLGQWNK 494
L W++
Sbjct: 581 TLNNWHQ 587
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 114 (45.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+LT +K Y+AL +
Sbjct: 737 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQLTSRQKLLYQAL--K 788
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + +S++ L+++ R+ C+HP L R +T
Sbjct: 789 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL-FERQET 836
Score = 80 (33.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 548 GILADEMGLGKTVQSIALLAHLAERENIWG 577
Score = 80 (33.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1109 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1168
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1169 MVADFQNRNDI 1179
Score = 49 (22.3 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 515 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 545
Score = 41 (19.5 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 532 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 586
Query: 488 LLGQWNK 494
L W++
Sbjct: 587 TLNNWHQ 593
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 435 ASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLIN 477
AS+ G GY P ++ ++L +D ++QT+ + N
Sbjct: 2 ASELGAGDDGGYT-ELAKPLYLQYLERALRLDHFLRQTSAIFN 43
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 119 (46.9 bits), Expect = 3.9e-09, Sum P(5) = 3.9e-09
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPAD-MQVIYCELTEAEKDFYEAL 560
+ D +L +++ +M+RR T G+PIL +PP ++ I EL+ EK Y L
Sbjct: 740 DNDSENSRLA-AVVPSLMIRRRVHDTFM-GQPILRIPPTHPVKTISVELSTEEKLIYHRL 797
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
R + + +++G + L RLRQC HPFL+
Sbjct: 798 EDRFRDNLNSHIKEGVSSKKLRTYFTYLTRLRQCTSHPFLL 838
Score = 73 (30.8 bits), Expect = 3.9e-09, Sum P(5) = 3.9e-09
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRG 427
GGILAD MGLGKTV +A + + G
Sbjct: 546 GGILADQMGLGKTVQMLACMAQNQGEG 572
Score = 70 (29.7 bits), Expect = 3.9e-09, Sum P(5) = 3.9e-09
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 641 VQEVVEELQKGEQGE---CPICLEAFEDAVLT-PCAHRLCRECL 680
+ E +E +Q + E C C E +D+ +T PC H CR+C+
Sbjct: 911 MNEQLERIQAEKTIEDLICRSCTELPQDSQITEPCGHTFCRDCI 954
Score = 54 (24.1 bits), Expect = 3.9e-09, Sum P(5) = 3.9e-09
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 743 KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788
K I+F+ W +L I FL G++ QR+ +++F+
Sbjct: 1080 KIIIFTHWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFT 1125
Score = 46 (21.3 bits), Expect = 3.9e-09, Sum P(5) = 3.9e-09
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G TLI+ P + QW ++K
Sbjct: 572 GPTLIVAPAAAIEQWKSELKK 592
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 112 (44.5 bits), Expect = 3.9e-09, Sum P(4) = 3.9e-09
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+ T +K Y+AL +
Sbjct: 733 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQQTSRQKLLYQAL--K 784
Query: 564 SKVKFDQFVEQGRILHNYA-----SILELLLRLRQCCDHPFLVMSRGDT 607
+K+ D ++ A S++ L+++ R+ C+HP L R +T
Sbjct: 785 NKISIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPEL-FERQET 832
Score = 82 (33.9 bits), Expect = 3.9e-09, Sum P(4) = 3.9e-09
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 716 DIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL 775
D E +S K+ L L L G + +++SQ T +DLL+ + ++RLDG+
Sbjct: 1100 DKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSS 1159
Query: 776 NQQQREKVLKQFSEDNNI 793
+R ++ F N+I
Sbjct: 1160 KISERRDMVADFQNRNDI 1177
Score = 80 (33.2 bits), Expect = 3.9e-09, Sum P(4) = 3.9e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 544 GILADEMGLGKTVQSIALLAHLAERENIWG 573
Score = 49 (22.3 bits), Expect = 3.9e-09, Sum P(4) = 3.9e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 511 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 541
Score = 41 (19.5 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 461 KSLSIDKLIKQTNTLIN 477
K+L +D+ ++QT+ + N
Sbjct: 31 KALRLDQFLRQTSAIFN 47
Score = 41 (19.5 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 528 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 582
Query: 488 LLGQWNK 494
L W++
Sbjct: 583 TLNNWHQ 589
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 86 (35.3 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 21/93 (22%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K +++ LP +VI C + + + L +K+
Sbjct: 750 IRRLHKVLRPFLLRRLKKDVEKD------LPDKQERVIKCRFSALQAKLNKQLATHNKMV 803
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ G++ + +L++LR+ C+HPF+
Sbjct: 804 VSDG-KGGKV--GMRGLSNMLMQLRKLCNHPFV 833
Score = 81 (33.6 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR 780
W + K +L + L +G + ++F Q T +++++ L + +LRLDG+ R
Sbjct: 852 WRTAGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDR 911
Query: 781 EKVLKQFS 788
+LK F+
Sbjct: 912 SDLLKLFN 919
Score = 77 (32.2 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 402 GILADAMGLGKTVMTIALLLTH 423
GILAD MGLGKT+ TI+L+ TH
Sbjct: 558 GILADEMGLGKTIQTISLI-TH 578
Score = 58 (25.5 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 51 KTPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEG 92
K +I P +++L +SK+ A S+N +AE++ E +S+G
Sbjct: 159 KNLQIPP-RVQQQLFMSKKVTTPAPSDNVAVAESVLEKFSQG 199
Score = 53 (23.7 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 297 NDVDDVEPISDSDVDNIVGVGY---SSEIEE--MEPPSTLKC-ELRPYQKQALHWMVQL 349
+D +D+ SD + + + Y + I+E E PS L L+ YQ + L WM+ L
Sbjct: 493 DDDEDIASGSDEEGEGRRKIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISL 551
Score = 48 (22.0 bits), Expect = 3.9e-09, Sum P(6) = 3.9e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 477 NGGTLIICPMTLLGQWNKLIQK 498
NG L+I P++ L WN +K
Sbjct: 586 NGPFLVIVPLSTLTNWNLEFEK 607
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 146 (56.5 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 959 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1012
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1013 ---FS-FLTKGASQSNTPNLLNTMMELRKCCNHPYLI 1045
Score = 83 (34.3 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+
Sbjct: 1076 SGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAA 1135
Query: 784 LKQFSEDNN 792
+ +FS ++
Sbjct: 1136 IDRFSRPDS 1144
Score = 60 (26.2 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ +I L
Sbjct: 777 ILADEMGLGKTIQSITFL 794
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(4) = 2.6e-05
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 606 DTQDYSD-LNKLAKRFLKGSSNA-LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAF 663
+++D SD N + + G S+A L E+ + A ++ E E P +
Sbjct: 1959 NSEDSSDESNGVKVKPNAGLSHARLYDEESRLSLTASPADLTTEDSIQTALETPHSTDWP 2018
Query: 664 EDAVLTPCAHRLCRECLLGSWKTP 687
+D VL ++C L G W +P
Sbjct: 2019 KDRVLICRIEQVCSAVLTGKWSSP 2042
Score = 43 (20.2 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + N I G L+I P++ + W +
Sbjct: 790 SITFLQEVYNVGIRGPFLVIAPLSTITNWER 820
Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 754 QLREYQLEGVNWLL 767
Score = 38 (18.4 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 396 LQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQ 451
LQ G A GL ++ +L S+ L+ Q+ + S GG E + Q
Sbjct: 344 LQPQAGSSQGTAQGL-----SVVKVLNASEVANLTASQTVVKTSTGGGESRKLDSQ 394
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 95 (38.5 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 716 DIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
+I + +E++ K+ +L K L L G + +LFSQ T LD+LQ L + R+DG+
Sbjct: 339 EIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGS 398
Query: 775 LNQQQREKVLKQFSE 789
+ ++R +K F +
Sbjct: 399 VRGEERHLAIKNFGQ 413
Score = 91 (37.1 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
E+ E +L + +L+P +LRR K+ E LP VIY ++ +K +Y+A+
Sbjct: 243 EKESESASELYK-LLQPFLLRRVKAEVATE------LPRKTEVVIYHGMSALQKKYYKAI 295
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + L N +L +LR+C DHP+L
Sbjct: 296 LMKDLDAFENETAKKVKLQN------VLSQLRKCVDHPYL 329
Score = 65 (27.9 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
G IL D MGLGKT TIAL +
Sbjct: 68 GCILGDEMGLGKTCQTIALFI 88
Score = 51 (23.0 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 335 LRPYQKQALHWMVQ 348
LRPYQ Q ++W+ Q
Sbjct: 48 LRPYQLQGVNWLAQ 61
Score = 50 (22.7 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G LI+CP+++L W + +++
Sbjct: 98 GPFLILCPLSVLSNWKEEMER 118
Score = 41 (19.5 bits), Expect = 0.00061, Sum P(5) = 0.00060
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 624 SSNALEGEDKDVPSRAYVQEVVEELQKGEQ 653
SS LE ED D S YV V Q G +
Sbjct: 703 SSAQLEYEDPDSTSIRYVSGDVTHPQAGAE 732
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 96 (38.9 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR KS L LP + QV++C LT+ + Y+ F SK +
Sbjct: 727 VLRDTINPYLLRRMKSDVKMS----LSLPDKNEQVLFCRLTDEQHKVYQN-FIDSKAVY- 780
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
RIL+ I L+ LR+ C+HP L
Sbjct: 781 ------RILNGENQIFSGLVALRKICNHPDL 805
Score = 96 (38.9 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 32/112 (28%), Positives = 56/112 (50%)
Query: 689 SGLCPVCRKTISRQDLITA-PTG-SRFQVD-IEKN----WVESTKIAVLLKELENLCLSG 741
SGL + RK + DL + P S D +E+ W S K+ V+ L+ G
Sbjct: 791 SGLVAL-RKICNHPDLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQG 849
Query: 742 SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ +LFSQ L +L++ L + +L++DGT R+ ++ +++ED +I
Sbjct: 850 QRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSI 901
Score = 71 (30.1 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 401 GGILADAMGLGKTVMTIALL--LTHSQ 425
GGIL D MGLGKT+ IA L L++S+
Sbjct: 521 GGILGDEMGLGKTIQIIAFLAGLSYSK 547
Score = 59 (25.8 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G TLI+CP T++ QW K
Sbjct: 561 GPTLIVCPTTVMHQWVK 577
Score = 37 (18.1 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 427 GGLSGIQSASQPSDG 441
G G +S S P+DG
Sbjct: 365 GDTEGEESGSSPTDG 379
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 158 (60.7 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 61/246 (24%), Positives = 115/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 267 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 326
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 327 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 380
Query: 481 LIICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L G++ E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 381 ELFSLLHFLEPGRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 435
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 436 -LAPKEETIIEVELTNIQKKYYRAILEKN---F-AFLSKGGGQANVPNLLNTMMELRKCC 490
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 491 NHPYLI 496
Score = 86 (35.3 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 529 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 588
Query: 786 QFSEDNN 792
+FS ++
Sbjct: 589 RFSRPDS 595
Score = 37 (18.1 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 205 KLREYQLEGVNWLL 218
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 114 (45.2 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + ++YC+LT +K Y+AL +
Sbjct: 737 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LMYCQLTSRQKLLYQAL--K 788
Query: 564 SKVKFDQFVEQG-----RILHNYASILELLLRLRQCCDHPFLVMSRGDT 607
+K+ + ++ + +S++ L+++ R+ C+HP L R +T
Sbjct: 789 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL-FERQET 836
Score = 80 (33.2 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 548 GILADEMGLGKTVQSIALLAHLAERENIWG 577
Score = 79 (32.9 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+S K+ L L L G + +++SQ T +DLL+ + ++RLDG+ +R
Sbjct: 1109 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1168
Query: 783 VLKQFSEDNNI 793
++ F N+I
Sbjct: 1169 MVADFQTRNDI 1179
Score = 49 (22.3 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 515 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 545
Score = 41 (19.5 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 429 LSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI-DKLIKQTNTLINGGTLIICPMT 487
L G+ + + GI G ++D+ + K +S+++ L ++ N I G LII P +
Sbjct: 532 LKGMNWLANLYEQGINGI-LADEMG--LGKTVQSIALLAHLAEREN--IWGPFLIISPAS 586
Query: 488 LLGQWNK 494
L W++
Sbjct: 587 TLNNWHQ 593
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 165 (63.1 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 64/258 (24%), Positives = 117/258 (45%)
Query: 366 WEA-YRLLDERELVVYLNA-FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
WE +R E +VY + S + ++ + A+G L+ + T ++L
Sbjct: 523 WEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILAD 582
Query: 424 SQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGTLI 482
L I + D E + + +++ L++ K ++++ + T T L N +
Sbjct: 583 CPE--LKKIHWSCVIID---EAHRLKNRNCKLLEGL-KLMALEHKVLLTGTPLQNSVEEL 636
Query: 483 ICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
+ L Q+ E GD E +K +QSILKP+MLRR K ++ L
Sbjct: 637 FSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------L 690
Query: 538 PPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
P +I ELT +K +Y A+ +++ F F+ +G HN +++ ++ LR+CC+H
Sbjct: 691 APKQETIIEVELTNIQKKYYRAILEKN---FS-FLSKGANQHNMPNLINTMMELRKCCNH 746
Query: 598 PFLVMSRGDTQDYSDLNK 615
P+L+ S + + D K
Sbjct: 747 PYLI-SGAEEKILEDFRK 763
Score = 79 (32.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 783 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 842
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 843 RFCKPDS 849
Score = 39 (18.8 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 459 QLREYQLEGMNWLL 472
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 105 (42.0 bits), Expect = 5.4e-09, Sum P(5) = 5.4e-09
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 694 VCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAF 753
+C +D+ A S VD+ W + K +L + L L L+G K+++F Q T
Sbjct: 1158 ICNHPFIFEDVERAIDPSGTNVDLL--WRAAGKFELLDRILPKLFLTGHKTLMFFQMTQI 1215
Query: 754 LDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE 789
+ +++ L N +LRLDG+ R +L QF++
Sbjct: 1216 MTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFND 1251
Score = 91 (37.1 bits), Expect = 5.4e-09, Sum P(5) = 5.4e-09
Identities = 23/93 (24%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
+K + +L+P + RR K ++E LP +VI C L+ + Y+ + K +
Sbjct: 1082 IKRLHKVLRPFLFRRLKKDVEKE------LPDKVEKVIKCPLSGLQLKLYQQMKKHGMLF 1135
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D E+G+ + +++L++ C+HPF+
Sbjct: 1136 VDG--EKGKT--GIKGLQNTVMQLKKICNHPFI 1164
Score = 72 (30.4 bits), Expect = 5.4e-09, Sum P(5) = 5.4e-09
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIA +
Sbjct: 890 GILADEMGLGKTIQTIAFI 908
Score = 58 (25.5 bits), Expect = 5.4e-09, Sum P(5) = 5.4e-09
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 279 LHASLLHANKSKVQSAKVNDVDDVE-PISDSDVDNIVGVGYSSEI-EEMEPPST-LKCEL 335
+ S +H+ + S K ++ ++E PIS+ D N+ + I EE+E P + L
Sbjct: 814 IQQSNIHSGNT---SGKGSNSAELEAPISEED-KNLDYFKVAHRIHEEVEQPKIFVGGTL 869
Query: 336 RPYQKQALHWMVQL 349
+ YQ + L WM+ L
Sbjct: 870 KDYQLKGLEWMLSL 883
Score = 39 (18.8 bits), Expect = 5.4e-09, Sum P(5) = 5.4e-09
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 465 IDKLIKQTNTLINGGTLIICPMTLLGQW 492
I LI++ N G LII P++ L W
Sbjct: 908 ITYLIEKKNQ--QGPFLIIVPLSTLTNW 933
Score = 38 (18.4 bits), Expect = 4.4e-07, Sum P(5) = 4.4e-07
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 245 LFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQ-SAK 295
L L I +K+ T D + + KD HA L K +++ SA+
Sbjct: 717 LTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRIERSAR 768
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 110 (43.8 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 26/103 (25%), Positives = 55/103 (53%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E +E + + +++P +LRR K +++ +P VI C L+ ++ YE
Sbjct: 1116 EYNETLITRLHKVIRPFLLRRLKKEVEKQ------MPKKYEHVITCRLSNRQRYLYEDFM 1169
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
R+K + + ++ G +L S++ +L++LR+ C+HP + +R
Sbjct: 1170 SRAKTR--ETLQTGNLL----SVINVLMQLRKVCNHPNMFEAR 1206
Score = 101 (40.6 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ + + L L ++G + ++F+Q T LD+L+ L+ + +LRLDG+ +QR+ +++
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718
Query: 786 QFSEDNNI 793
+F+ D I
Sbjct: 1719 RFNGDKRI 1726
Score = 78 (32.5 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 935 GILADEMGLGKTIQTIALL 953
Score = 48 (22.0 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEK 351
P LK LR YQ L W+V + +
Sbjct: 907 PFLLKHSLREYQHIGLDWLVTMNE 930
Score = 41 (19.5 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 287 NKSKVQSAKVNDVDDVEPISDSDVD 311
N S++ S K DD P S S+ D
Sbjct: 645 NSSRLTSPKRESDDDFRPESGSEDD 669
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 120 (47.3 bits), Expect = 6.6e-09, Sum P(5) = 6.6e-09
Identities = 33/137 (24%), Positives = 66/137 (48%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W + + + E + +G+ + L+P +LRR K ++ LPP Q++ ++T
Sbjct: 592 WEEF-ETAHNESNHKGISALHKKLEPFLLRRVKKDVEKS------LPPKTEQILRVDMTA 644
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
+K FY+ + ++ + + V+ G I N + L++ L++CC+H L +R Y
Sbjct: 645 HQKQFYKWILTKNYRELSKGVK-GSI--N--GFVNLVMELKKCCNHASL--TRQYDHIYD 697
Query: 612 DLNKLAKRFLKGSSNAL 628
D ++ LK S +
Sbjct: 698 DAQGRLQQLLKSSGKLI 714
Score = 85 (35.0 bits), Expect = 6.6e-09, Sum P(5) = 6.6e-09
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G + ++FSQ LD+LQ L P RLDG++ R++
Sbjct: 710 SGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQA 769
Query: 784 LKQFS 788
L ++
Sbjct: 770 LDHYN 774
Score = 72 (30.4 bits), Expect = 6.6e-09, Sum P(5) = 6.6e-09
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSG 431
ILAD MGLGKT+ +I+LL + R L+G
Sbjct: 427 ILADEMGLGKTIQSISLLASLFHRYDLAG 455
Score = 46 (21.3 bits), Expect = 6.6e-09, Sum P(5) = 6.6e-09
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + L+WMV
Sbjct: 404 KLRDYQLEGLNWMV 417
Score = 42 (19.8 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 24/115 (20%), Positives = 39/115 (33%)
Query: 49 NFKTPEIKPLAARRKLIISK-ENEIRASSENGTLAEAIAEGYSEGSEWWFVGWGDVPAMS 107
N K+P R++ K E+ +G + + EG W W
Sbjct: 368 NLKSPNKNSNVLRKRPKFEKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAW------- 420
Query: 108 TSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDA 162
KG DE+ ++S + L+S F VVP S + + + A
Sbjct: 421 -CKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFA 474
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 438 PSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLIN 477
PSD E D + +++P+ K++KQT ++
Sbjct: 112 PSDNSEESQSSEDDWDD--RRKPRRTVTKKVVKQTKKAVS 149
Score = 37 (18.1 bits), Expect = 6.6e-09, Sum P(5) = 6.6e-09
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 478 GGTLIICPMTLLGQWNK 494
G L++ P++ + W K
Sbjct: 455 GPYLVVVPLSTMAAWQK 471
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 108 (43.1 bits), Expect = 6.8e-09, Sum P(5) = 6.8e-09
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 724 STKIAVLLKELENLCLSGS-KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
S KI VL + L L S S K +L S +T+ LDLL LS ++PFLRLDG+ Q+R+
Sbjct: 630 SAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQKRQS 689
Query: 783 VLKQFS 788
+++ F+
Sbjct: 690 LVEDFN 695
Score = 75 (31.5 bits), Expect = 6.8e-09, Sum P(5) = 6.8e-09
Identities = 31/107 (28%), Positives = 49/107 (45%)
Query: 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILV--LPPADMQVIYCELTEAEK 554
+K E+G+ R +L + + MLRRT IL LPP V++C+ T +
Sbjct: 508 EKDIEKGEARNEEL-RELTSQFMLRRTAD--------ILADYLPPKTEYVLFCKPTNTQA 558
Query: 555 DFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
Y+ + V QG L N S L+L+ L++ C+ P L+
Sbjct: 559 KIYQNVLASP-------VFQGA-LGNSESALQLITILKKLCNSPSLL 597
Score = 74 (31.1 bits), Expect = 6.8e-09, Sum P(5) = 6.8e-09
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 401 GGILADAMGLGKTVMTIALLLT 422
G ILAD MGLGKT+ TI LL T
Sbjct: 320 GAILADDMGLGKTLQTITLLWT 341
Score = 56 (24.8 bits), Expect = 6.8e-09, Sum P(5) = 6.8e-09
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDER 506
LI+CP+TL+ W + +K G+ER
Sbjct: 359 LIVCPVTLINNWRREFRKWL--GNER 382
Score = 42 (19.8 bits), Expect = 7.6e-06, Sum P(5) = 7.6e-06
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 398 MARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMK 457
++R I A + GL +T + + + RG +SG + + + +P
Sbjct: 203 ISRSEISAPSPGLAETRVKESQAANLASRGSISGAYKRPLLESTVMPAASLDEPTPRHDP 262
Query: 458 KEPKSL 463
K+P +L
Sbjct: 263 KQPGAL 268
Score = 39 (18.8 bits), Expect = 6.8e-09, Sum P(5) = 6.8e-09
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 360 TTLHPCWEAYRLLDERELVVYLNAFSGEA 388
T + W+ ++ R+ VYL SG A
Sbjct: 101 TKKNKIWDGDGIVSVRDGYVYLQDISGRA 129
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 95 (38.5 bits), Expect = 7.3e-09, Sum P(5) = 7.3e-09
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E + + + +L+P +LRR K+ E LP VIY ++ +K +Y+A+
Sbjct: 235 EKESKSASELHRLLRPFLLRRVKAQVATE------LPKKTEVVIYHGMSALQKKYYKAIL 288
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + L N +L +LR+C DHP+L
Sbjct: 289 MKDLDAFENETAKKVKLQN------VLTQLRKCVDHPYL 321
Score = 90 (36.7 bits), Expect = 7.3e-09, Sum P(5) = 7.3e-09
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 696 RKTISRQDLITAPTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFL 754
RK + L F+V ++ +E++ K+ +L + L L G + +LFSQ T L
Sbjct: 313 RKCVDHPYLFDGVEPEPFEVG--EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHML 370
Query: 755 DLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE 789
D+LQ + + R+DG++ ++R +K F +
Sbjct: 371 DILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGK 405
Score = 69 (29.3 bits), Expect = 7.3e-09, Sum P(5) = 7.3e-09
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
G IL D MGLGKT TIALL+
Sbjct: 60 GCILGDEMGLGKTCQTIALLI 80
Score = 50 (22.7 bits), Expect = 7.3e-09, Sum P(5) = 7.3e-09
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G LI+CP+++L W + +++
Sbjct: 90 GPFLILCPLSVLSNWKEEMER 110
Score = 46 (21.3 bits), Expect = 7.3e-09, Sum P(5) = 7.3e-09
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 335 LRPYQKQALHWMVQLEKGR 353
LR YQ + ++W+VQ G+
Sbjct: 40 LRSYQLEGVNWLVQCFHGQ 58
Score = 42 (19.8 bits), Expect = 0.00025, Sum P(5) = 0.00025
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 624 SSNALEGEDKDVPSRAYVQEVVEELQKGEQ 653
+S L+ ED D+ S YV V Q GE+
Sbjct: 709 TSAELDYEDLDLTSINYVSGDVTHPQAGEE 738
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 93 (37.8 bits), Expect = 7.4e-09, Sum P(5) = 7.4e-09
Identities = 32/129 (24%), Positives = 59/129 (45%)
Query: 505 ERGLKLVQSILK---PIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E G ++++ K P +LRR K + LPP +Q YC+ +E +K +E
Sbjct: 1532 EAGALAIEALHKQVLPFLLRRLKEEVLND------LPPKIIQNYYCDPSELQKKLFEDFT 1585
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLA---K 618
K+ + + + I + L +R+ C+ P LV+ G Q Y+++ + K
Sbjct: 1586 KKEQKALQEKMGSSEKADK-EHIFQALQYMRRLCNSPALVVKEGHKQ-YNEVQQYLQEKK 1643
Query: 619 RFLKGSSNA 627
+L+ S+A
Sbjct: 1644 SYLRDVSHA 1652
Score = 81 (33.6 bits), Expect = 7.4e-09, Sum P(5) = 7.4e-09
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 319 SSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
S ++EE + P +K ELRPYQ++ ++W+ L +
Sbjct: 1302 SRKVEEFKLPVAIKAELRPYQQEGVNWLAFLNR 1334
Score = 78 (32.5 bits), Expect = 7.4e-09, Sum P(5) = 7.4e-09
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 739 LSGSKSILFSQWTAFLDLLQIPLSRNNIP---FLRLDGTLNQQQREKVLKQFSED 790
+S ++++F Q LD++Q + + +P FLRLDG + +R+ ++ +F+ D
Sbjct: 1683 VSPHRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSD 1737
Score = 65 (27.9 bits), Expect = 7.4e-09, Sum P(5) = 7.4e-09
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLT-HSQR 426
GIL D MGLGKT+ TI ++ + H R
Sbjct: 1339 GILCDDMGLGKTLQTICIVASDHHMR 1364
Score = 50 (22.7 bits), Expect = 7.4e-09, Sum P(5) = 7.4e-09
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 480 TLIICPMTLLGQWNKLIQK 498
+LIICP +L G W + +++
Sbjct: 1381 SLIICPPSLSGHWQQEVKQ 1399
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 92 (37.4 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 28/92 (30%), Positives = 41/92 (44%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +++P +LRR K +E LP +Y ELT+ +K Y A + K++ D
Sbjct: 806 IAKMIRPFLLRRLKQDVVKE------LPDKIETNLYSELTDEQKTIYLAYLE--KIQADL 857
Query: 571 FVEQGRILHNYASILELLLRLRQ-CCDHPFLV 601
G +L L RLRQ CCD V
Sbjct: 858 EASNGNASEERIKLLAGLTRLRQICCDPSLFV 889
Score = 77 (32.2 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 401 GGILADAMGLGKTVMTIALL 420
GGILAD MGLGKTV TI+ L
Sbjct: 636 GGILADDMGLGKTVQTISFL 655
Score = 77 (32.2 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 717 IEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLN 776
+E ES K+ L ++ +G + +LFSQ+T L +++ L + +DG
Sbjct: 889 VENYQGESGKLLQLFDTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTP 948
Query: 777 QQQREKVLKQFSEDNN 792
+ R ++ F+E N
Sbjct: 949 SKTRLDMVNAFNEGEN 964
Score = 59 (25.8 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 300 DDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
D+ S S + + + SE + P LK ELR YQ WM L K
Sbjct: 582 DEHHKFSRSFRELLTDITTQSE-DSFALPKGLKAELRDYQLTGFEWMKSLAK 632
Score = 47 (21.6 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 126 LKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGE 164
++ F ++ +K S +A + ++ EI++F KDA +
Sbjct: 1 MEHFTAIQNKMIPYSVKQAGKKLMEDGEIIQFREKDASD 39
Score = 40 (19.1 bits), Expect = 7.7e-09, Sum P(6) = 7.7e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 481 LIICPMTLLGQWNKLIQK 498
LII P +LL W ++K
Sbjct: 669 LIITPASLLYNWQSELEK 686
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 105 (42.0 bits), Expect = 9.2e-09, Sum P(4) = 9.2e-09
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+AVLL++L+ G + ++F+Q T LD+L+ L+ + +LRLDG+ +QR+ ++++
Sbjct: 2036 LAVLLRQLK---AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMER 2092
Query: 787 FSEDNNI 793
F+ D I
Sbjct: 2093 FNADKRI 2099
Score = 103 (41.3 bits), Expect = 9.2e-09, Sum P(4) = 9.2e-09
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E +E +K + +L+P +LRR K +++ +P VI C L++ ++ Y+
Sbjct: 829 QEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ------MPKKYEHVIRCRLSKRQRCLYDDF 882
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
++ K + + G ++ S++ +L++LR+ C+HP L R T +
Sbjct: 883 MAQTTTK--ETLATG----HFMSVINILMQLRKVCNHPNLFDPRPVTSPF 926
Score = 75 (31.5 bits), Expect = 9.2e-09, Sum P(4) = 9.2e-09
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 649 GILADEMGLGKTIQTISLL 667
Score = 49 (22.3 bits), Expect = 9.2e-09, Sum P(4) = 9.2e-09
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 317 GYSSEIEEME-P-PSTLKCELRPYQKQALHWMVQL-EK 351
GY+ +++ P P L+ +LR YQ L W+V + EK
Sbjct: 608 GYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEK 645
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 105 (42.0 bits), Expect = 9.8e-09, Sum P(4) = 9.8e-09
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 671 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 723
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 724 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 768
Score = 101 (40.6 bits), Expect = 9.8e-09, Sum P(4) = 9.8e-09
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 790 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 849
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 850 LDHFNADGS 858
Score = 65 (27.9 bits), Expect = 9.8e-09, Sum P(4) = 9.8e-09
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 506 ILADEMGLGKTIQTISFL 523
Score = 46 (21.3 bits), Expect = 9.8e-09, Sum P(4) = 9.8e-09
Identities = 25/101 (24%), Positives = 39/101 (38%)
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEI----EEMEPP 328
+KD S LH+N S +++ D S+S+ + G G+ SE E E
Sbjct: 4 NKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY 369
S + E + Q + + EK E + WE Y
Sbjct: 64 SESESESAGSKSQPVLPEAK-EKPASKKERIADVKKMWEEY 103
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 483 ELRDYQLEGLNWL 495
Score = 37 (18.1 bits), Expect = 7.4e-08, Sum P(4) = 7.4e-08
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 455 TRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSW 499
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 146 (56.5 bits), Expect = 1.0e-08, Sum P(4) = 1.0e-08
Identities = 34/104 (32%), Positives = 61/104 (58%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y
Sbjct: 1056 EFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYY 1109
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1110 RAILEKN---FS-FLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1149
Score = 79 (32.9 bits), Expect = 1.0e-08, Sum P(4) = 1.0e-08
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 708 PTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
P+ S F + ++S K+ ++ K L + G K ++FSQ LD+L+ L
Sbjct: 1166 PSASDFHLQA---MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRY 1222
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNN 792
+ R+DG + R+ + +FS+ ++
Sbjct: 1223 LYERIDGRVRGNLRQAAIDRFSKPDS 1248
Score = 62 (26.9 bits), Expect = 1.0e-08, Sum P(4) = 1.0e-08
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 400 RGGILADAMGLGKTVMTIALL 420
R ILAD MGLGKT+ +I L
Sbjct: 878 RNCILADEMGLGKTIQSITFL 898
Score = 44 (20.5 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 464 SIDKLIKQTNTLINGGTLIICPMTLLGQWNK 494
SI L + T I G LII P++ + W +
Sbjct: 894 SITFLYEILLTGIRGPFLIIAPLSTIANWER 924
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(4) = 1.0e-08
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + L+W++
Sbjct: 858 QLREYQLEGLNWLL 871
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 98 (39.6 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 696 RKTISRQDLITAPTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFL 754
RK ++ L F++ + VE++ K+ +L K L L G + +LFSQ T L
Sbjct: 319 RKCVAHPYLFNGVEPEPFEIG--DHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLL 376
Query: 755 DLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE 789
D+LQ + + RLDG++ ++R +K F +
Sbjct: 377 DILQDYMDYRGYSYERLDGSVRGEERHLAIKNFGQ 411
Score = 87 (35.7 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E + K + ++L+P +LRR KS + LP V+Y ++ ++ +Y+A+
Sbjct: 241 EKESEPAKELHNLLQPFLLRRVKSEVTAD------LPKKVEVVLYHGMSALQRKYYKAIL 294
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + +L N +L++LR+C HP+L
Sbjct: 295 TKDLDAFEGGTGRKVMLQN------VLIQLRKCVAHPYL 327
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 397 QMARGGILADAMGLGKTVMTIALLL 421
Q+ G IL D MGLGKT TI+LLL
Sbjct: 62 QVQHGCILGDEMGLGKTCQTISLLL 86
Score = 55 (24.4 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 464 SIDKLIKQTNTLINGG-TLIICPMTLLGQWNKLIQK 498
+I L+ T L N +LI+CP+++L W + +++
Sbjct: 81 TISLLLYLTKKLTNKERSLILCPLSVLSNWKEELER 116
Score = 51 (23.0 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 334 ELRPYQKQALHWMVQ 348
+LRPYQ ++W+VQ
Sbjct: 45 KLRPYQLDGVNWLVQ 59
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 98 (39.6 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 689 SGLCPVCRKTISRQDLITAPTGSRF-------QVDIEKN---WVESTKIAVLLKELENLC 738
SGL + RK + DL T G R Q+ E++ W S K+ V+ L
Sbjct: 774 SGLIAL-RKICNHPDLFTG--GPRLLRGIPHDQLTEEEHFGYWKRSGKMIVVESLLRLWH 830
Query: 739 LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
G + +LF+Q L++L++ + N +L++DGT R+ ++ QF+++ +I
Sbjct: 831 KQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDI 885
Score = 97 (39.2 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR K+ L LP + QV++C LTE ++ Y+ F SK
Sbjct: 710 VLRDTINPYLLRRMKADVKAN----LSLPDKNEQVLFCRLTEDQRQVYQT-FLDSK---- 760
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
E +IL+ + L+ LR+ C+HP L
Sbjct: 761 ---EVYQILNGDMQVFSGLIALRKICNHPDL 788
Score = 71 (30.1 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 401 GGILADAMGLGKTVMTIALL--LTHSQ 425
GGIL D MGLGKT+ IA L L++S+
Sbjct: 504 GGILGDEMGLGKTIQIIAFLAGLSYSK 530
Score = 56 (24.8 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G T+I+CP T++ QW K
Sbjct: 544 GPTVIVCPATVMHQWVK 560
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 320 SEIEE-MEPPSTLKCELRPYQKQALHWMVQL 349
+E +E + P L +L YQ+ + WM +L
Sbjct: 468 AEFDEGFKIPGFLWKKLFKYQQTGVRWMWEL 498
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 266 TRKRPLDSKDGCGLHASLLHANKSK 290
+RKRP+ K H+ NK K
Sbjct: 273 SRKRPIMKKKTTKKHSGETTPNKEK 297
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 106 (42.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 38/119 (31%), Positives = 59/119 (49%)
Query: 656 CPICLEAFEDA--VLTPCAHRLCRECLLGSW-KTPTSGL--CPVCRKTISRQDLITAPTG 710
CPIC + +D V+ C H +C+ CL K +G+ CP+CR+ S Q + G
Sbjct: 1052 CPIC-QTQDDVRYVMMVCGHFVCQHCLDSMRRKNGRAGVTKCPLCRQD-SPQLYYSVRPG 1109
Query: 711 SRFQVDIEKNWVESTKIAVLLK-ELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPF 768
+ + + + S+ + ++LK + EN K I+FSQW A L + LS N I F
Sbjct: 1110 AHKSIIGDFSTKISSVVELVLKIKGEN---EQEKIIVFSQWQAILIEIARALSLNGIQF 1165
Score = 99 (39.9 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 33/103 (32%), Positives = 52/103 (50%)
Query: 321 EIEE-MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAA-TTLHPCWEAYRLLDERELV 378
E+E ++ P + +LR YQ++ + WM+ E+ A LH R+ + +
Sbjct: 160 ELERSLDLPKRFQSQLRKYQQRTVSWMLGREQQITQVPANFIVLHAIDGITRVFKHKYCL 219
Query: 379 VYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLL 421
+ + E E P + + GGILAD MGLGKTV +A+LL
Sbjct: 220 QF---YPFEE--EIPK-ISLPPGGILADEMGLGKTVEFLAMLL 256
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 584 ILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGE 631
IL+ LR+RQ C P + S + DY L R + N + E
Sbjct: 599 ILKPFLRIRQTCSVPVVFNSNVSSTDYLHPQDLLARLKSNNENECKTE 646
Score = 53 (23.7 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 448 ISDQSPNLMKKEPKSLSIDKLIKQTNTLI-NGGTLIICPMTLLGQWNKLIQK 498
ISD S N+ P S +L+K L+ +G T+I+ P + QW + I K
Sbjct: 322 ISDTS-NVPHLCPSCWS--ELVKSGERLVESGATIIVSPNAIKMQWFEEIHK 370
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 158 (60.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 61/246 (24%), Positives = 115/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 1030 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1089
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 1090 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 1143
Query: 481 LIICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L G++ E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 1144 ELFSLLHFLEPGRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 1198
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 1199 -LAPKEETIIEVELTNIQKKYYRAILEKN---F-AFLSKGGGQANVPNLLNTMMELRKCC 1253
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 1254 NHPYLI 1259
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1292 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1351
Query: 786 QFSEDNN 792
+FS ++
Sbjct: 1352 RFSRPDS 1358
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 968 KLREYQLEGVNWLL 981
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 102 (41.0 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 24/107 (22%), Positives = 57/107 (53%)
Query: 494 KLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+L ++ + ++ + + +L P +LRR K+ ++ +LP + V Y +T+ +
Sbjct: 335 ELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKS-----LLPKIETNV-YIGMTDMQ 388
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
++Y+ L ++ + V G+ +L ++++LR+CC+HP+L
Sbjct: 389 VEWYKRLLEKDIDAVNGVV--GK-REGKTRLLNIVMQLRKCCNHPYL 432
Score = 81 (33.6 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D E S K+ +L K L+ GS+ ++FSQ + LD+L+ +
Sbjct: 436 AEPGPPYTTD-EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDY 494
Query: 767 PFLRLDGTLNQQQREKVLKQFS 788
+ R+DG+ + + R + + +++
Sbjct: 495 EYCRIDGSTSHEDRIEAIDEYN 516
Score = 69 (29.3 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+ L
Sbjct: 160 GILADEMGLGKTLQTISFL 178
Score = 61 (26.5 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 267 RKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEME 326
R R +DSK S A S+ + K +D E + D + + + + E
Sbjct: 77 RIREIDSKTS--FKESSKKAKNSRRR--KTEKEEDAELLQDEEHQD--DEDHQHTVMT-E 129
Query: 327 PPSTLK-CELRPYQKQALHWMVQLEKGR 353
PS +K +LR YQ Q L+W++ L + R
Sbjct: 130 SPSYIKEGKLREYQIQGLNWLISLYENR 157
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
I+G ++I P + L W + K
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAK 209
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 102 (41.0 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 24/107 (22%), Positives = 57/107 (53%)
Query: 494 KLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+L ++ + ++ + + +L P +LRR K+ ++ +LP + V Y +T+ +
Sbjct: 335 ELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKS-----LLPKIETNV-YIGMTDMQ 388
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
++Y+ L ++ + V G+ +L ++++LR+CC+HP+L
Sbjct: 389 VEWYKRLLEKDIDAVNGVV--GK-REGKTRLLNIVMQLRKCCNHPYL 432
Score = 81 (33.6 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D E S K+ +L K L+ GS+ ++FSQ + LD+L+ +
Sbjct: 436 AEPGPPYTTD-EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDY 494
Query: 767 PFLRLDGTLNQQQREKVLKQFS 788
+ R+DG+ + + R + + +++
Sbjct: 495 EYCRIDGSTSHEDRIEAIDEYN 516
Score = 69 (29.3 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+ L
Sbjct: 160 GILADEMGLGKTLQTISFL 178
Score = 61 (26.5 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 267 RKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEME 326
R R +DSK S A S+ + K +D E + D + + + + E
Sbjct: 77 RIREIDSKTS--FKESSKKAKNSRRR--KTEKEEDAELLQDEEHQD--DEDHQHTVMT-E 129
Query: 327 PPSTLK-CELRPYQKQALHWMVQLEKGR 353
PS +K +LR YQ Q L+W++ L + R
Sbjct: 130 SPSYIKEGKLREYQIQGLNWLISLYENR 157
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
I+G ++I P + L W + K
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAK 209
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 96 (38.9 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 23/99 (23%), Positives = 48/99 (48%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E + + + +L+P +LRR K+ ++ LPP ++ L+ +K++Y+ L
Sbjct: 472 ENQQEVIDKLHKVLRPFLLRRIKTEVEKS------LPPKKEIKLFVGLSTMQKEWYKRLL 525
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D V + +L + ++LR+ C+HP+L
Sbjct: 526 SKD---LDAVVVGAKGNTGRVRLLNICMQLRKACNHPYL 561
Score = 85 (35.0 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+A+L K L+ L GS+ ++FSQ + LD+L+ + + R+DG+ RE
Sbjct: 580 SGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENS 639
Query: 784 LKQFSE 789
++ +++
Sbjct: 640 IENYNK 645
Score = 79 (32.9 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKT+ TI+LL S+ G+ G
Sbjct: 297 GILADEMGLGKTLQTISLLGYLSEYKGIRG 326
Score = 54 (24.1 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 327 PPSTLKCELRPYQKQALHWMVQL-EKG 352
PP +R YQ L+W++QL E+G
Sbjct: 268 PPYIKSGTMRDYQVYGLNWLIQLYERG 294
Score = 50 (22.7 bits), Expect = 3.4e-08, Sum P(5) = 3.4e-08
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 297 NDVDDVEPISDSDVDNIVGVGYSSEIEEM--EPPSTLKCE---LRPYQKQALHWMVQLEK 351
+ VDD E ++D + N G+ E EE E +++ E L+ ++Q + +LEK
Sbjct: 100 DQVDDDEDLNDPTIQN--GINRKDETEEARNERLESIRLEKERLKQIREQQRKQLQELEK 157
Query: 352 GR 353
+
Sbjct: 158 NQ 159
Score = 40 (19.1 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I G LII P + L W K
Sbjct: 324 IRGPHLIIAPKSTLSGWAK 342
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 111 (44.1 bits), Expect = 1.5e-08, Sum P(5) = 1.5e-08
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 708 PTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
PT F++D + VE++ K +L + L L G K ++FSQ T+ LD+L
Sbjct: 599 PTTGDFKID--EQLVEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGY 656
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ RLDG+++ R++ +K+FS D +
Sbjct: 657 EYSRLDGSMSYADRDENMKKFSSDPEV 683
Score = 79 (32.9 bits), Expect = 1.5e-08, Sum P(5) = 1.5e-08
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E ++ L ++ IL P +LRR KS E +PP V+Y LT ++ FY A+
Sbjct: 441 EREQNILHMLHLILTPFLLRRLKSDVTLE------VPPKKEIVVYAPLTNKQEAFYMAIV 494
Query: 562 KRSKVK 567
++ K
Sbjct: 495 NKTIAK 500
Score = 65 (27.9 bits), Expect = 1.5e-08, Sum P(5) = 1.5e-08
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 402 GILADAMGLGKTVMTIA---LLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK 458
GILAD MGLGKT+ IA +++ G + S + E + + L+
Sbjct: 254 GILADEMGLGKTIQCIAHIAMMVEKKVLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLYH 313
Query: 459 EPKSLSIDKLIKQTNTLINGGTLIICPMTL 488
P+ +D L+K+ + G+L +CP+ +
Sbjct: 314 GPQKERLD-LVKKIRQ--HQGSLRMCPVVV 340
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(5) = 1.5e-08
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 587 LLLRLRQCCDHPFLV 601
+L+ L++CC+H +L+
Sbjct: 579 ILMLLKRCCNHAYLI 593
Score = 40 (19.1 bits), Expect = 1.5e-08, Sum P(5) = 1.5e-08
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 288 KSKVQSAKVNDVDDVEPISD--SDVDNIVGVGYSSEIEEM-EPPSTLKCELRPYQKQAL 343
+ + Q++ + +D+E +SD SD+ + ++M +P T+ + P Q+ L
Sbjct: 169 EEEAQASVKLEAEDIEKLSDTNSDIKGRLSETLRENSKQMLDPERTVNGQPVPAQQPQL 227
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 105 (42.0 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 21/87 (24%), Positives = 49/87 (56%)
Query: 514 ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVE 573
+L+P +LRR K+ ++ +LP ++ +Y ++TE ++ +Y+ + ++ D
Sbjct: 392 VLRPFLLRRVKADVEKS-----LLPKKEVN-LYLKMTEMQRTWYQKILEKD---IDAVNG 442
Query: 574 QGRILHNYASILELLLRLRQCCDHPFL 600
+ +L ++++LR+CC+HP+L
Sbjct: 443 ANGKRESKTRLLNIVMQLRKCCNHPYL 469
Score = 77 (32.2 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
A G + D E S K+ VL K L+ L GS+ ++FSQ + LD+L+
Sbjct: 473 AEPGPPYTTD-EHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREY 531
Query: 767 PFLRLDGTLNQQQREKVLKQFSE 789
+ R+DG + R + ++++
Sbjct: 532 KYSRIDGGTAHEDRIAAIDEYNK 554
Score = 71 (30.1 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 402 GILADAMGLGKTVMTIALL--LTHSQRGGLSG 431
GILAD MGLGKT+ TI+ L L H G++G
Sbjct: 207 GILADEMGLGKTLQTISFLGYLRHIM--GITG 236
Score = 60 (26.2 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 30/110 (27%), Positives = 47/110 (42%)
Query: 246 FR-LLGITP-FKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVE 303
FR LLG+T F+ T D R ++ D A+ S+ A V E
Sbjct: 96 FRYLLGLTDLFRHFIETNPDPNIRNI-MEKIDAQNQEATKGKKGASRQGGASSGRVRRTE 154
Query: 304 PISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
D+++ G S+E E P+ ++ +R YQ L+W++ L E G
Sbjct: 155 AEEDAELLKDEKHGGSAETVFRESPAFIQGTMRDYQIAGLNWLISLHENG 204
Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I G L+I P + L W +
Sbjct: 234 ITGPHLVIVPKSTLDNWKR 252
Score = 38 (18.4 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 772 DGTLNQQQREKVLKQFSEDN 791
D TL+ ++ E+ L Q DN
Sbjct: 826 DATLSDREAEQALDQQEIDN 845
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 153 (58.9 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 60/246 (24%), Positives = 114/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 979 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1038
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 1039 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 1092
Query: 481 LIICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L + + E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 1093 ELFSLLHFLEPTRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 1147
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 1148 -LAPKEETIIEVELTNIQKKYYRAILEKN---F-AFLSKGGGQANVPNLLNTMMELRKCC 1202
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 1203 NHPYLI 1208
Score = 87 (35.7 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1241 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1300
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1301 RFSKPDS 1307
Score = 49 (22.3 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 51 KTPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSE 94
K ++K + K N+ R +E L + + +G +EGSE
Sbjct: 630 KEKKVKTATPKPKSSKKSSNKKRPDAEASALKKKVNKGKTEGSE 673
Score = 41 (19.5 bits), Expect = 9.9e-08, Sum P(4) = 9.9e-08
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 260 TPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDN 312
TP ++K + A NK K + ++ +D+D P S D+
Sbjct: 638 TPKPKSSKKSSNKKRPDAEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEDD 690
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 917 KLREYQLEGVNWLL 930
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 91 (37.1 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
PTG F D+ W S K +L + L L SG + ++F Q T +++++ L
Sbjct: 723 PTG--FNYDML--WRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWR 778
Query: 768 FLRLDGTLNQQQREKVLKQFSE 789
+LRLDG+ R K+L F++
Sbjct: 779 YLRLDGSTKADDRSKLLGVFND 800
Score = 86 (35.3 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 20/93 (21%), Positives = 49/93 (52%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + E LP +VI C+++ ++ Y + K+ +
Sbjct: 630 IRRLHKVLRPFLLRRLKKDVEAE------LPDKVEKVIRCQMSGLQQKLYYQM-KKHGML 682
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ + ++G+ + +++L++ C+HPF+
Sbjct: 683 YVEDAKRGKT--GIKGLQNTVMQLKKICNHPFV 713
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 402 GILADAMGLGKTVMTIALLLTH 423
GILAD MGLGKT+ TI+L+ TH
Sbjct: 438 GILADEMGLGKTIQTISLI-TH 458
Score = 59 (25.8 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 292 QSAKVNDVDD-VEPISDSDVDNIVGVGYSSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL 349
+SA D+D + P D +D V ++ E PS L +L+ YQ + L WM+ L
Sbjct: 373 ESAYDEDMDRRMNPEDDRKID-YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMISL 431
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 477 NGGTLIICPMTLLGQW 492
NG L+I P++ L W
Sbjct: 466 NGPFLVIVPLSTLTNW 481
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 93 (37.8 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E + + +L+P +LRR K+ E LP VIY ++ +K +Y+A+
Sbjct: 241 EKESESASELHKLLQPFLLRRVKAEVATE------LPKKTEVVIYHGMSALQKKYYKAIL 294
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + L N +L +LR+C DHP+L
Sbjct: 295 MKDLDAFENETAKKVKLQN------ILSQLRKCVDHPYL 327
Score = 92 (37.4 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G + +LFSQ T LD+LQ + + R+DG++ ++R
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405
Query: 784 LKQFSE 789
+K F +
Sbjct: 406 IKNFGQ 411
Score = 69 (29.3 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 379 VYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLL 421
++L ++ E G IL D MGLGKT TIAL +
Sbjct: 44 IHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFI 86
Score = 53 (23.7 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G LI+CP+++L W + +Q+
Sbjct: 96 GPFLILCPLSVLSNWKEEMQR 116
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 335 LRPYQKQALHWMVQ 348
LR YQ + ++W+ Q
Sbjct: 46 LRSYQLEGVNWLAQ 59
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 88 (36.0 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + K +LF Q T+ + +++ + +LRLDGT + R +
Sbjct: 412 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 471
Query: 784 LKQFSE 789
LK F+E
Sbjct: 472 LKTFNE 477
Score = 83 (34.3 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 18/93 (19%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ ++ Y + + +
Sbjct: 298 IRRLHKVLRPFLLRRLKKEVEAQ------LPEKVEYVIKCDMSALQRVLYRHMQAKGVLL 351
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 352 TDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM 384
Score = 78 (32.5 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 108 GILADEMGLGKTIQTIALITYLMEHKRING 137
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 291 VQSAKVNDVDDVEPISDS---DVDNIVGVGYSSEIEEMEPPSTLKCE--LRPYQKQALHW 345
+++AK DVDD +S + + + V ++ E ++ S L L+ YQ + L W
Sbjct: 40 IENAK-QDVDDEYGVSQALARGLQSYYAVAHAVT-ERVDKQSALMVNGVLKQYQIKGLEW 97
Query: 346 MVQL 349
+V L
Sbjct: 98 LVSL 101
Score = 47 (21.6 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 476 INGGTLIICPMTLLGQW 492
ING LII P++ L W
Sbjct: 135 INGPFLIIVPLSTLSNW 151
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 94 (38.1 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 502 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561
E + + + +L+P +LRR K+ E LP V+Y ++ +K +Y+A+
Sbjct: 235 EKESKSASELHRLLQPFLLRRVKAQVATE------LPKKTEVVVYHGMSALQKKYYKAIL 288
Query: 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ F+ + L N +L +LR+C DHP+L
Sbjct: 289 MKDLDAFENETAKKVKLQN------ILTQLRKCVDHPYL 321
Score = 89 (36.4 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 696 RKTISRQDLITAPTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFL 754
RK + L F+V ++ +E++ K+ +L + L L G + +LFSQ T L
Sbjct: 313 RKCVDHPYLFDGVEPEPFEVG--EHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHML 370
Query: 755 DLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQF 787
D+LQ + + R+DG++ ++R +K F
Sbjct: 371 DILQDYMDYRGYSYERVDGSVRGEERHLAIKNF 403
Score = 69 (29.3 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 401 GGILADAMGLGKTVMTIALLL 421
G IL D MGLGKT TIALL+
Sbjct: 60 GCILGDEMGLGKTCQTIALLI 80
Score = 49 (22.3 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G L++CP+++L W + +++
Sbjct: 90 GPFLVLCPLSVLSNWKEEMER 110
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 335 LRPYQKQALHWMVQ 348
LR YQ + ++W+VQ
Sbjct: 40 LRSYQLEGVNWLVQ 53
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 118 (46.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 97 GDKKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 150
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 151 KD---IDILNSAGKM--DKMRLLNILMQLRKCCNHPYL 183
Score = 98 (39.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ VL K L L GS+ ++FSQ T LD+L+ N + RLDG +R+
Sbjct: 203 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDS 262
Query: 784 LKQFSEDNN 792
+ ++E N+
Sbjct: 263 INAYNEPNS 271
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 103 (41.3 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K LL LE +G + ++FSQ+T L ++ L+R IP+ LDG Q+R ++
Sbjct: 895 SAKFEQLLDILEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVEL 954
Query: 784 LKQFSE 789
+F+E
Sbjct: 955 CNRFNE 960
Score = 86 (35.3 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 32/115 (27%), Positives = 51/115 (44%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
E GD R + + + KP +LRR K +E LP + EL +K Y A
Sbjct: 794 EFGDLRREDIAKRV-KPFVLRRLKEDVLKE------LPDKIEHLQSSELLPDQKRLYAAY 846
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS--RGDTQDYSDL 613
+ + + + +++ + N IL L RLRQ C HP L + +G + + L
Sbjct: 847 LAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSSAKFEQL 901
Score = 77 (32.2 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 341 QALHWMVQLEKGRCL--DEAATTLHPCWEAYRLLDERELVVYLNAFSGEATI---EFPST 395
+++ WM L +G L DE+ L + + L + + L A E + E+ T
Sbjct: 568 RSVKWMNGLHEGNVLSLDESVQDLVESIQNPKKL-KFTVPQTLRAVMREYQVYGFEWMKT 626
Query: 396 LQMAR-GGILADAMGLGKTVMTIALL 420
L R GGILAD MGLGKT+ +IA +
Sbjct: 627 LAYYRFGGILADDMGLGKTLQSIAYI 652
Score = 60 (26.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 278 GLHASLLHA---NKSKVQSAK-VNDVDDVEPIS-DSDVDNIVGVGYSSEIEEMEPPSTLK 332
G+ LH N ++S K +N + + +S D V ++V + + + P TL+
Sbjct: 551 GIRKEFLHGEEVNVPLIRSVKWMNGLHEGNVLSLDESVQDLVESIQNPKKLKFTVPQTLR 610
Query: 333 CELRPYQKQALHWMVQL 349
+R YQ WM L
Sbjct: 611 AVMREYQVYGFEWMKTL 627
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 176 LLPLVRDKKVEIL 188
+LP +R+KK+ IL
Sbjct: 655 VLPEIREKKLPIL 667
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 145 (56.1 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 34/104 (32%), Positives = 61/104 (58%)
Query: 501 EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557
E GD E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y
Sbjct: 1054 EFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYY 1107
Query: 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
A+ +++ F F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1108 RAILEKN---F-AFLSKGAGQANVPNLVNTMMELRKCCNHPYLI 1147
Score = 78 (32.5 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 708 PTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
PT F + ++S K+ ++ K L + G K ++FSQ LD+L+ L
Sbjct: 1164 PTAPDFHLQA---MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRY 1220
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNN 792
+ R+DG + R+ + +FS+ ++
Sbjct: 1221 LYERIDGRVRGNLRQAAIDRFSKPDS 1246
Score = 62 (26.9 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 400 RGGILADAMGLGKTVMTIALL 420
R ILAD MGLGKT+ +I L
Sbjct: 876 RNCILADEMGLGKTIQSITFL 896
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + L+W++
Sbjct: 856 QLREYQLEGLNWLL 869
Score = 40 (19.1 bits), Expect = 2.2e-08, Sum P(5) = 2.2e-08
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 476 INGGTLIICPMTLLGQWNK 494
I G LII P++ + W +
Sbjct: 904 IRGPFLIIAPLSTITNWER 922
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 105 (42.0 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 660 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 712
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 713 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 757
Score = 101 (40.6 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 779 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 838
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 839 LDHFNADGS 847
Score = 65 (27.9 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 495 ILADEMGLGKTIQTISFL 512
Score = 46 (21.3 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 29/107 (27%), Positives = 42/107 (39%)
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEI----EEMEPP 328
+KD S LH+N S +++ D S+S+ + G G+ SE E E
Sbjct: 3 NKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 329 STLKCEL-----RPYQKQALHWMVQLEKGRCLDEAATTLHPC-WEAY 369
S + E +P +A +K R D T H C WE Y
Sbjct: 63 SESESESAGSKSQPVLPEAKEKPAS-KKERIADVKKKT-HRCMWEEY 107
Score = 43 (20.2 bits), Expect = 4.6e-08, Sum P(4) = 4.6e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 471 ELRDYQLEGLNWL 483
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 443 TRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSW 487
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 107 (42.7 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E +K + +L P MLRR K+ + +P ++ EL++ +K +Y+ + R+
Sbjct: 297 EDQIKKLHDLLGPHMLRRLKADVFKN------MPAKTELIVRVELSQMQKKYYKFILTRN 350
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
F+ +G N S+L +++ L++CC+HP+L
Sbjct: 351 ---FEALNSKGG--GNQVSLLNIMMDLKKCCNHPYL 381
Score = 87 (35.7 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P GS + K+ S K+ +L K L+ L G + ++FSQ T LDLL+ L
Sbjct: 393 PNGSYDGSSLVKS---SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYK 449
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ R+DG + R++ + +F+
Sbjct: 450 YERIDGGITGGLRQEAIDRFN 470
Score = 73 (30.8 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQP 438
ILAD MGLGKTV TI L + + G G S P
Sbjct: 105 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 140
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 335 LRPYQKQALHWM 346
L PYQ + L+W+
Sbjct: 83 LHPYQLEGLNWL 94
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 89 (36.4 bits), Expect = 2.4e-08, Sum P(5) = 2.4e-08
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 517 PIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK-RSKVKFDQFVEQG 575
P +LRR K ++ LPP +Q YC L+ + YE K R+K D+ V
Sbjct: 326 PFLLRRMKEDVLQD------LPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSA 379
Query: 576 RI--------LHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLA 617
+ L + + L LR+ C+HP LV++ + + KLA
Sbjct: 380 TLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLA 429
Score = 79 (32.9 bits), Expect = 2.4e-08, Sum P(5) = 2.4e-08
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 745 ILFSQWTAFLDLLQIPLSRNNIP---FLRLDGTLNQQQREKVLKQFSEDNNI 793
++F Q + LD+++ L + ++P +LRLDG++ QR ++ +F+ D +I
Sbjct: 476 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSI 527
Score = 62 (26.9 bits), Expect = 2.4e-08, Sum P(5) = 2.4e-08
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 402 GILADAMGLGKTVMTIALLL-THSQR 426
GIL D MGLGKT+ +I +L H R
Sbjct: 115 GILCDDMGLGKTLQSICILAGDHCHR 140
Score = 58 (25.5 bits), Expect = 2.4e-08, Sum P(5) = 2.4e-08
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
++E + P + ELR YQ+ ++W+ L K
Sbjct: 80 KLENYKIPVPINAELRKYQQDGVNWLAFLNK 110
Score = 50 (22.7 bits), Expect = 2.4e-08, Sum P(5) = 2.4e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 480 TLIICPMTLLGQW 492
+L++CP TL G W
Sbjct: 157 SLVVCPPTLTGHW 169
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 98 (39.6 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 496 IQKPYE--EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+Q+ YE E + + +L+P +LRR K+ E LP VIY ++ +
Sbjct: 236 VQR-YEDIEKESESASELYKLLQPFLLRRVKAEVAAE------LPKKTEVVIYHGMSALQ 288
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
K +Y+A+ + D F + + + +L +LR+C DHP+L
Sbjct: 289 KKYYKAILMKDLEISDAFENE---MAKKVKLQNVLSQLRKCVDHPYL 332
Score = 93 (37.8 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 716 DIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774
+I + +E++ K+ +L K L L G + +LFSQ T LD+LQ + + R+DG+
Sbjct: 342 EIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGS 401
Query: 775 LNQQQREKVLKQFSE 789
+ ++R +K F +
Sbjct: 402 VRGEERHLAIKNFGQ 416
Score = 64 (27.6 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 379 VYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLL 421
++L + E G IL D MGLGKT TIA+ +
Sbjct: 46 IHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFI 88
Score = 50 (22.7 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 478 GGTLIICPMTLLGQWNKLIQK 498
G LI+CP+++L W + +++
Sbjct: 98 GPFLILCPLSVLSNWKEEMER 118
Score = 48 (22.0 bits), Expect = 9.8e-07, Sum P(4) = 9.8e-07
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 335 LRPYQKQALHWMVQ 348
LRPYQ + ++W+ Q
Sbjct: 48 LRPYQLEGVNWLAQ 61
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 92 (37.4 bits), Expect = 2.9e-08, Sum P(5) = 2.9e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1115
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1116 LKKFNE 1121
Score = 85 (35.0 bits), Expect = 2.9e-08, Sum P(5) = 2.9e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 995
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 996 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 79 (32.9 bits), Expect = 2.9e-08, Sum P(5) = 2.9e-08
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MG GKT+ TIAL+ + GL+G
Sbjct: 752 GILADEMGPGKTIQTIALITYLMEHKGLNG 781
Score = 56 (24.8 bits), Expect = 2.9e-08, Sum P(5) = 2.9e-08
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 291 VQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALHWMV 347
+++AK DVDD + S + V ++ SE E + + L+ YQ Q L WMV
Sbjct: 685 IETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMV 743
Query: 348 QL 349
L
Sbjct: 744 SL 745
Score = 45 (20.9 bits), Expect = 2.9e-08, Sum P(5) = 2.9e-08
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 476 INGGTLIICPMTLLGQW 492
+NG LII P++ L W
Sbjct: 779 LNGPYLIIVPLSTLSNW 795
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 105 (42.0 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 671 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 723
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 724 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 768
Score = 101 (40.6 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 790 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 849
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 850 LDHFNADGS 858
Score = 65 (27.9 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 506 ILADEMGLGKTIQTISFL 523
Score = 46 (21.3 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 25/101 (24%), Positives = 39/101 (38%)
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEI----EEMEPP 328
+KD S LH+N S +++ D S+S+ + G G+ SE E E
Sbjct: 4 NKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY 369
S + E + Q + + EK E + WE Y
Sbjct: 64 SESESESAGSKSQPVLPEAK-EKPASKKERIADVKKMWEEY 103
Score = 43 (20.2 bits), Expect = 6.0e-08, Sum P(4) = 6.0e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 483 ELRDYQLEGLNWL 495
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 455 TRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSW 499
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 105 (42.0 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 673 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 725
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 726 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 770
Score = 101 (40.6 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 792 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 851
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 852 LDHFNADGS 860
Score = 65 (27.9 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 508 ILADEMGLGKTIQTISFL 525
Score = 46 (21.3 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 25/101 (24%), Positives = 39/101 (38%)
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEI----EEMEPP 328
+KD S LH+N S +++ D S+S+ + G G+ SE E E
Sbjct: 3 NKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY 369
S + E + Q + + EK E + WE Y
Sbjct: 63 SESESESAGSKSQPVLPEAK-EKPASKKERIADVKKMWEEY 102
Score = 43 (20.2 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 485 ELRDYQLEGLNWL 497
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 457 TRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSW 501
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 92 (37.4 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1115
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1116 LKKFNE 1121
Score = 85 (35.0 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 995
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 996 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 79 (32.9 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 752 GILADEMGLGKTIQTIALITYLMEHKRLNG 781
Score = 58 (25.5 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 682 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 740
Query: 345 WMVQL 349
WMV L
Sbjct: 741 WMVSL 745
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 162 (62.1 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 61/244 (25%), Positives = 112/244 (45%)
Query: 366 WEA-YRLLDERELVVYLNA-FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
WE +R E +VY + S + ++ + A+G L+ + T ++L
Sbjct: 524 WEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILAD 583
Query: 424 SQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGTLI 482
L I + D E + + +++ L++ K ++++ + T T L N +
Sbjct: 584 CPE--LKKIHWSCVIID---EAHRLKNRNCKLLEGL-KLMALEHKVLLTGTPLQNSVEEL 637
Query: 483 ICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
+ L Q+ E GD E +K +QSILKP+MLRR K ++ L
Sbjct: 638 FSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------L 691
Query: 538 PPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
P +I ELT +K +Y A+ +++ F F+ +G HN +++ ++ LR+CC+H
Sbjct: 692 APKQETIIEVELTNIQKKYYRAILEKN---FS-FLTKGANQHNMPNLINTMMELRKCCNH 747
Query: 598 PFLV 601
P+L+
Sbjct: 748 PYLI 751
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 784 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 843
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 844 RFCKPDS 850
Score = 41 (19.5 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 9 VLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTP 53
+LS ++ G + SN+ ++ NH P + ++ FD +K+P
Sbjct: 1 MLSRIKHTAG-KLSNLKVL------NHSPMSDASVNFD---YKSP 35
Score = 39 (18.8 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 460 QLREYQLEGMNWLL 473
>ZFIN|ZDB-GENE-060929-1066 [details] [associations]
symbol:btr16 "bloodthirsty-related gene family,
member 16" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000315 InterPro:IPR003877 Pfam:PF00622 Pfam:PF00643
PROSITE:PS50089 PROSITE:PS50119 SMART:SM00184 SMART:SM00336
Prosite:PS00518 ZFIN:ZDB-GENE-060929-1066 GO:GO:0046872
GO:GO:0008270 GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
InterPro:IPR003879 InterPro:IPR006574 PRINTS:PR01407 SMART:SM00589
GeneTree:ENSGT00660000095328 EMBL:CR388163 IPI:IPI00860699
Ensembl:ENSDART00000105114 ArrayExpress:E7FBX8 Bgee:E7FBX8
Uniprot:E7FBX8
Length = 536
Score = 161 (61.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 44/147 (29%), Positives = 69/147 (46%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS 711
E+ +C ICL+AF D V TPC H C+ CL W + CP+C++T +++ + T
Sbjct: 15 EELQCSICLDAFTDPVSTPCGHNFCKSCLNQCWNNSQTYNCPLCKETFNKKPELKINTAL 74
Query: 712 RFQVDI-EKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDL-LQIPLSRNNIPFL 769
R V + +N+ E T VL + + K L Q A+ L + N+
Sbjct: 75 RQLVQVFRQNFSEKTS-EVLCDICDGVKKKALKICLLCQ-NAYCQTHLDLHQKVTNLKHK 132
Query: 770 RLDGTLNQ-----QQREKVLKQFSEDN 791
+D LN Q+ EK L+ F +D+
Sbjct: 133 LIDPVLNLENYICQKHEKPLELFCKDD 159
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 92 (37.4 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1031 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1090
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1091 LKKFNE 1096
Score = 85 (35.0 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 917 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 970
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 971 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1003
Score = 79 (32.9 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 727 GILADEMGLGKTIQTIALITYLMEHKRLNG 756
Score = 58 (25.5 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 657 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 715
Query: 345 WMVQL 349
WMV L
Sbjct: 716 WMVSL 720
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 92 (37.4 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1092
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1093 LKKFNE 1098
Score = 85 (35.0 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 972
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 973 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 79 (32.9 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 729 GILADEMGLGKTIQTIALITYLMEHKRLNG 758
Score = 58 (25.5 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 659 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 717
Query: 345 WMVQL 349
WMV L
Sbjct: 718 WMVSL 722
Score = 38 (18.4 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 322 IEEMEPPSTLKCELRPYQKQALHWMVQLEK 351
+++ +PP + +L+P Q Q +V +
Sbjct: 215 MQQQQPPPQSQPQLQPQQPQQQQALVNYNR 244
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 92 (37.4 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1092
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1093 LKKFNE 1098
Score = 85 (35.0 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 972
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 973 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 79 (32.9 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 729 GILADEMGLGKTIQTIALITYLMEHKRLNG 758
Score = 58 (25.5 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 659 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 717
Query: 345 WMVQL 349
WMV L
Sbjct: 718 WMVSL 722
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P +F+VD E S K +L + L L G K ++FSQ T LD+L
Sbjct: 583 PATQQFKVD-EDLVKNSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFK 641
Query: 768 FLRLDGTLNQQQREKVLKQFSEDNNI 793
F RLDG+++ RE+ + QF+ D +
Sbjct: 642 FSRLDGSMSYSDREENMHQFNNDPEV 667
Score = 80 (33.2 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E ++ L ++ IL P +LRR KS E +PP V+Y L + ++ FY A+
Sbjct: 429 KEKEQNILHMLHQILTPFLLRRLKSDVALE------VPPKREVVVYAPLAKKQETFYTAI 482
Query: 561 FKRS 564
R+
Sbjct: 483 VNRT 486
Score = 72 (30.4 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRG 427
GILAD MGLGKT+ IA + +RG
Sbjct: 243 GILADEMGLGKTIQCIATIALMVERG 268
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 92 (37.4 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1092
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1093 LKKFNE 1098
Score = 85 (35.0 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 972
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 973 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 79 (32.9 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 729 GILADEMGLGKTIQTIALITYLMEHKRLNG 758
Score = 58 (25.5 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 659 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 717
Query: 345 WMVQL 349
WMV L
Sbjct: 718 WMVSL 722
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 92 (37.4 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1054 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1113
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1114 LKKFNE 1119
Score = 85 (35.0 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 940 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 993
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 994 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1026
Score = 79 (32.9 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 750 GILADEMGLGKTIQTIALITYLMEHKRLNG 779
Score = 58 (25.5 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 680 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 738
Query: 345 WMVQL 349
WMV L
Sbjct: 739 WMVSL 743
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 92 (37.4 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1049 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1108
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1109 LKKFNE 1114
Score = 85 (35.0 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 935 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 988
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 989 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1021
Score = 79 (32.9 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 745 GILADEMGLGKTIQTIALITYLMEHKRLNG 774
Score = 58 (25.5 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 675 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
Query: 345 WMVQL 349
WMV L
Sbjct: 734 WMVSL 738
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 107 (42.7 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E +K + +L P MLRR K+ + +P ++ EL++ +K +Y+ + R+
Sbjct: 888 EDQIKKLHDLLGPHMLRRLKADVFKN------MPAKTELIVRVELSQMQKKYYKFILTRN 941
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
F+ +G N S+L +++ L++CC+HP+L
Sbjct: 942 ---FEALNSKGG--GNQVSLLNIMMDLKKCCNHPYL 972
Score = 87 (35.7 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P GS + K+ S K+ +L K L+ L G + ++FSQ T LDLL+ L
Sbjct: 984 PNGSYDGSSLVKS---SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYK 1040
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ R+DG + R++ + +F+
Sbjct: 1041 YERIDGGITGGLRQEAIDRFN 1061
Score = 73 (30.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQP 438
ILAD MGLGKTV TI L + + G G S P
Sbjct: 696 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 731
Score = 41 (19.5 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 335 LRPYQKQALHWM 346
L PYQ + L+W+
Sbjct: 674 LHPYQLEGLNWL 685
Score = 38 (18.4 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 437 QPSDGGIEGYD-ISDQSPNLMKKEPKS 462
+ DGG+ G+D + P + K+ KS
Sbjct: 1 EEEDGGLGGFDDYFPEEPVGLPKKKKS 27
Score = 37 (18.1 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQ 471
SD SPN KK+ K L DK K+
Sbjct: 65 SDYSPN--KKKKKKLK-DKKEKK 84
>MGI|MGI:1276124 [details] [associations]
symbol:Ep400 "E1A binding protein p400" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0035267 "NuA4 histone acetyltransferase complex"
evidence=ISO] [GO:0043967 "histone H4 acetylation" evidence=ISO]
[GO:0043968 "histone H2A acetylation" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1276124 GO:GO:0005524 GO:GO:0003677
GO:GO:0016607 GO:GO:0003682 GO:GO:0035267 GO:GO:0043968
GO:GO:0043967 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 KO:K11320 CTD:57634 HOVERGEN:HBG051488
OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400 EMBL:AB092694
EMBL:AB092695 EMBL:AC161348 EMBL:AK006168 EMBL:AK030095
EMBL:AK037693 EMBL:AK046892 EMBL:AK163566 EMBL:AK164049
EMBL:AK122517 EMBL:BC022153 EMBL:BC085511 IPI:IPI00229659
IPI:IPI00404291 IPI:IPI00480329 IPI:IPI00720144 IPI:IPI01008391
RefSeq:NP_083613.2 RefSeq:NP_775089.1 UniGene:Mm.270487
ProteinModelPortal:Q8CHI8 IntAct:Q8CHI8 STRING:Q8CHI8
PhosphoSite:Q8CHI8 PaxDb:Q8CHI8 PRIDE:Q8CHI8
Ensembl:ENSMUST00000041558 Ensembl:ENSMUST00000112435
Ensembl:ENSMUST00000112436 GeneID:75560 KEGG:mmu:75560
UCSC:uc008yrf.1 UCSC:uc008yrg.1 UCSC:uc008yrh.1 InParanoid:Q8CHI8
Bgee:Q8CHI8 CleanEx:MM_EP400 Genevestigator:Q8CHI8
GermOnline:ENSMUSG00000029505 Uniprot:Q8CHI8
Length = 3072
Score = 102 (41.0 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 19/67 (28%), Positives = 44/67 (65%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+A+LL++L++ G + ++ SQ LD+L++ L+ + + ++R+D N +QR+++++
Sbjct: 1819 LAILLQKLKS---EGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRS 1875
Query: 787 FSEDNNI 793
F+ D I
Sbjct: 1876 FNRDRRI 1882
Score = 101 (40.6 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 496 IQKPYEEGDERGLKLV---QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
++ P EE + K+V + +P +LRRTK +++ L V+ C L+
Sbjct: 1277 LKAPNEENQDYYHKMVIRLHRVTQPFILRRTKRDVEKQ------LTRKYEHVLKCRLSSR 1330
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
+K YE + + + + + ++ G ++ S+L +L RL++ C+HP LV R
Sbjct: 1331 QKALYEDVILQPRTQ--EALKSG----HFVSVLSVLTRLQRICNHPGLVEPR 1376
Score = 63 (27.2 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 25/105 (23%), Positives = 44/105 (41%)
Query: 258 EFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVG 317
E PSD +R+ + D + A + + + D+ +V ++++ + G
Sbjct: 1016 EDCPSDRESRRDSV-LIDSLFIMDQFKAAERMSIGKSNTKDITEVTAVAEAILPK--GSA 1072
Query: 318 YSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK----GRCLDEA 358
+ + PS L LR YQK L W+ +L + G DEA
Sbjct: 1073 RVTTAVKFSAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEA 1117
Score = 59 (25.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 402 GILADAMGLGKTVMTIA 418
GILAD GLGKTV IA
Sbjct: 1111 GILADEAGLGKTVQIIA 1127
Score = 49 (22.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 20/96 (20%), Positives = 41/96 (42%)
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISD 307
++ FKK + P Y R+ LD ++ KS+V +ND +V+ ++
Sbjct: 400 MMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEE--EEGKSEV----IND--EVKVVTG 451
Query: 308 SDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQAL 343
D V ++++ + + +P+Q Q+L
Sbjct: 452 KDGQTGTPVAIATQLPP-NVSAAFSSQQQPFQHQSL 486
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 92 (37.4 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1115
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1116 LKKFNE 1121
Score = 85 (35.0 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 995
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 996 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 79 (32.9 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 752 GILADEMGLGKTIQTIALITYLMEHKRLNG 781
Score = 58 (25.5 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYS-SEIEEMEPPSTLKCELRPYQKQALH 344
K +++AK DVDD + S + V ++ SE E + + L+ YQ Q L
Sbjct: 682 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 740
Query: 345 WMVQL 349
WMV L
Sbjct: 741 WMVSL 745
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 111 (44.1 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 29/102 (28%), Positives = 54/102 (52%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKR 563
DE L + ILKP MLRR K + E + + + YC+LT ++ Y+AL +
Sbjct: 729 DENQLSRLHMILKPFMLRRIKKDVENELSDKIEI------LTYCQLTSRQRLLYQAL--K 780
Query: 564 SKVKFDQFVEQG----RILHNY-ASILELLLRLRQCCDHPFL 600
+K+ + ++ + H+ +S++ L+++ R+ C+HP L
Sbjct: 781 NKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDL 822
Score = 80 (33.2 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 402 GILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKTV +IALL ++R + G
Sbjct: 540 GILADEMGLGKTVQSIALLAHLAERENIWG 569
Score = 76 (31.8 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 716 DIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL 775
D E +S K+ L L L G + +++SQ T +DLL+ + ++RLDG+
Sbjct: 1123 DKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSS 1182
Query: 776 NQQQREKVLKQFSEDNNI 793
+R ++ F +I
Sbjct: 1183 KISERRDMVADFQSRTDI 1200
Score = 49 (22.3 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQL-EKG 352
E++ P+ +L+ YQ + ++W+ L E+G
Sbjct: 507 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 537
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 461 KSLSIDKLIKQTNTLIN 477
+SL +D ++QT T+ N
Sbjct: 38 RSLRLDTFLRQTATVFN 54
Score = 38 (18.4 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 57 PLAARRKLIISKENEIRASSENG 79
PL A +K IS E+E + S +G
Sbjct: 77 PLLAVKKDHISPEDETKDSCRDG 99
Score = 37 (18.1 bits), Expect = 5.2e-08, Sum P(5) = 5.2e-08
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 272 DSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDS 308
DS DG G +SL A+ + + + K + + + DS
Sbjct: 61 DSDDGLGEGSSL--ASSNPLLAVKKDHISPEDETKDS 95
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 105 (42.0 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+AVLL++L+ G + ++F+Q T LD+L+ L+ + +LRLDG+ +QR+ ++++
Sbjct: 2048 LAVLLRQLK---AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMER 2104
Query: 787 FSEDNNI 793
F+ D I
Sbjct: 2105 FNADKRI 2111
Score = 103 (41.3 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E +E +K + +L+P +LRR K +++ +P VI C L++ ++ Y+
Sbjct: 819 QEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ------MPKKYEHVIRCRLSKRQRCLYDDF 872
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
++ K + + G ++ S++ +L++LR+ C+HP L R T +
Sbjct: 873 MAQTTTK--ETLATG----HFMSVINILMQLRKVCNHPNLFDPRPVTSPF 916
Score = 75 (31.5 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 639 GILADEMGLGKTIQTISLL 657
Score = 49 (22.3 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 317 GYSSEIEEME-P-PSTLKCELRPYQKQALHWMVQL-EK 351
GY+ +++ P P L+ +LR YQ L W+V + EK
Sbjct: 598 GYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEK 635
Score = 38 (18.4 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 687 PTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKI 727
PT G PV S APTG + + N V T +
Sbjct: 1265 PTPGPTPVSVLPSSTPSTTPAPTG--LSLPLAANQVPPTMV 1303
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 105 (42.0 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+AVLL++L+ G + ++F+Q T LD+L+ L+ + +LRLDG+ +QR+ ++++
Sbjct: 2048 LAVLLRQLK---AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMER 2104
Query: 787 FSEDNNI 793
F+ D I
Sbjct: 2105 FNADKRI 2111
Score = 103 (41.3 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E +E +K + +L+P +LRR K +++ +P VI C L++ ++ Y+
Sbjct: 826 QEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ------MPKKYEHVIRCRLSKRQRCLYDDF 879
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
++ K + + G ++ S++ +L++LR+ C+HP L R T +
Sbjct: 880 MAQTTTK--ETLATG----HFMSVINILMQLRKVCNHPNLFDPRPVTSPF 923
Score = 75 (31.5 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 646 GILADEMGLGKTIQTISLL 664
Score = 49 (22.3 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 317 GYSSEIEEME-P-PSTLKCELRPYQKQALHWMVQL-EK 351
GY+ +++ P P L+ +LR YQ L W+V + EK
Sbjct: 605 GYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEK 642
Score = 38 (18.4 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 687 PTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKI 727
PT G PV S APTG + + N V T +
Sbjct: 1273 PTPGPTPVSVLPSSTPSTTPAPTG--LSLPLAANQVPPTMV 1311
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 105 (42.0 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 727 IAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786
+AVLL++L+ G + ++F+Q T LD+L+ L+ + +LRLDG+ +QR+ ++++
Sbjct: 2059 LAVLLRQLK---AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMER 2115
Query: 787 FSEDNNI 793
F+ D I
Sbjct: 2116 FNADKRI 2122
Score = 103 (41.3 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+E +E +K + +L+P +LRR K +++ +P VI C L++ ++ Y+
Sbjct: 827 QEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ------MPKKYEHVIRCRLSKRQRCLYDDF 880
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
++ K + + G ++ S++ +L++LR+ C+HP L R T +
Sbjct: 881 MAQTTTK--ETLATG----HFMSVINILMQLRKVCNHPNLFDPRPVTSPF 924
Score = 75 (31.5 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 647 GILADEMGLGKTIQTISLL 665
Score = 49 (22.3 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 317 GYSSEIEEME-P-PSTLKCELRPYQKQALHWMVQL-EK 351
GY+ +++ P P L+ +LR YQ L W+V + EK
Sbjct: 606 GYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEK 643
Score = 38 (18.4 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 687 PTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKI 727
PT G PV S APTG + + N V T +
Sbjct: 1273 PTPGPTPVSVLPSSTPSTTPAPTG--LSLPLAANQVPPTMV 1311
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 105 (42.0 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 714 QVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQ-----IPLSRNNIPF 768
Q ++ +N S K VL + L L SG K ++F+Q+T LDLL+ PLS I
Sbjct: 603 QAEVIRN---SAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKI-- 657
Query: 769 LRLDGTLNQQQREKVLKQFSED 790
RLDG+ N Q R++ + QF+ +
Sbjct: 658 CRLDGSTNHQIRDEQISQFNNN 679
Score = 77 (32.2 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 390 IEFPSTL-QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
+E+ TL Q GILAD MGLGKT+ I+ L +H G++G
Sbjct: 183 LEWLITLFQNGLNGILADEMGLGKTLQCISFL-SHLIENGING 224
Score = 72 (30.4 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD-FYEALFKRSKV 566
+K + +ILKP MLRR K + LPP +++ +T+ +K +Y+A+ K+
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKN------LPPKKEYLLHIPMTKLQKKIYYDAV--NDKL 449
Query: 567 KFDQFVE 573
FD VE
Sbjct: 450 -FDSLVE 455
Score = 49 (22.3 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
ING L++ P++ L W I+K
Sbjct: 222 INGPFLVVVPVSTLSNWYNEIRK 244
Score = 46 (21.3 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 319 SSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL 349
SS+I + P + +L+ YQ L W++ L
Sbjct: 158 SSKITNNKQPKLITGGQLKDYQMDGLEWLITL 189
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 588 LLRLRQCCDHPFL 600
+++LR C+ PF+
Sbjct: 582 MIQLRNICNSPFI 594
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 105 (42.0 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 714 QVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQ-----IPLSRNNIPF 768
Q ++ +N S K VL + L L SG K ++F+Q+T LDLL+ PLS I
Sbjct: 603 QAEVIRN---SAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKI-- 657
Query: 769 LRLDGTLNQQQREKVLKQFSED 790
RLDG+ N Q R++ + QF+ +
Sbjct: 658 CRLDGSTNHQIRDEQISQFNNN 679
Score = 77 (32.2 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 390 IEFPSTL-QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
+E+ TL Q GILAD MGLGKT+ I+ L +H G++G
Sbjct: 183 LEWLITLFQNGLNGILADEMGLGKTLQCISFL-SHLIENGING 224
Score = 72 (30.4 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD-FYEALFKRSKV 566
+K + +ILKP MLRR K + LPP +++ +T+ +K +Y+A+ K+
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKN------LPPKKEYLLHIPMTKLQKKIYYDAV--NDKL 449
Query: 567 KFDQFVE 573
FD VE
Sbjct: 450 -FDSLVE 455
Score = 49 (22.3 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
ING L++ P++ L W I+K
Sbjct: 222 INGPFLVVVPVSTLSNWYNEIRK 244
Score = 46 (21.3 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 319 SSEIEEMEPPSTLKC-ELRPYQKQALHWMVQL 349
SS+I + P + +L+ YQ L W++ L
Sbjct: 158 SSKITNNKQPKLITGGQLKDYQMDGLEWLITL 189
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(5) = 4.3e-08
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 588 LLRLRQCCDHPFL 600
+++LR C+ PF+
Sbjct: 582 MIQLRNICNSPFI 594
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 105 (42.0 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 640 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 692
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 693 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 737
Score = 101 (40.6 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 759 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 818
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 819 LDHFNADGS 827
Score = 65 (27.9 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 475 ILADEMGLGKTIQTISFL 492
Score = 43 (20.2 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 452 ELRDYQLEGLNWL 464
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 424 TRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSW 468
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 107 (42.7 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E +K + +L P MLRR K+ + +P ++ EL++ +K +Y+ + R+
Sbjct: 914 EDQIKKLHDLLGPHMLRRLKADVFKN------MPAKTELIVRVELSQMQKKYYKFILTRN 967
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
F+ +G N S+L +++ L++CC+HP+L
Sbjct: 968 ---FEALNSKGG--GNQVSLLNIMMDLKKCCNHPYL 998
Score = 87 (35.7 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP 767
P GS + K+ S K+ +L K L+ L G + ++FSQ T LDLL+ L
Sbjct: 1010 PNGSYDGSSLVKS---SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYK 1066
Query: 768 FLRLDGTLNQQQREKVLKQFS 788
+ R+DG + R++ + +F+
Sbjct: 1067 YERIDGGITGGLRQEAIDRFN 1087
Score = 73 (30.8 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQP 438
ILAD MGLGKTV TI L + + G G S P
Sbjct: 722 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Score = 48 (22.0 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 436 SQPSDGGIEGYD-ISDQSPNLM--KKEPKSLSIDK 467
S+ DGG+E +D P + KK+PK L +K
Sbjct: 26 SEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENK 60
Score = 41 (19.5 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 335 LRPYQKQALHWM 346
L PYQ + L+W+
Sbjct: 700 LHPYQLEGLNWL 711
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQ 471
SD SPN KK+ K L DK K+
Sbjct: 91 SDYSPN--KKKKKKLK-DKKEKK 110
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 147 (56.8 bits), Expect = 5.0e-08, Sum P(4) = 5.0e-08
Identities = 58/244 (23%), Positives = 116/244 (47%)
Query: 366 WEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
WE +R + +VVY + I+ + + ++G I+ A + T ++L
Sbjct: 449 WEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGG 508
Query: 424 SQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGTLI 482
G L+ I+ D E + + +++ L++ K ++++ + T T L N +
Sbjct: 509 C--GELNAIEWRCVIID---EAHRLKNKNCKLLEGL-KLMNLEHKVLLTGTPLQNTVEEL 562
Query: 483 ICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
+ L + + E GD E ++ +Q+ILKP+MLRR K +++ L
Sbjct: 563 FSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKK------L 616
Query: 538 PPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
P + +I ELT +K +Y A+ +++ F F+ +G N +++ ++ LR+CC+H
Sbjct: 617 APKEETIIEVELTNIQKKYYRAILEKN---FS-FLSKGAGQTNVPNLVNTMMELRKCCNH 672
Query: 598 PFLV 601
P+L+
Sbjct: 673 PYLI 676
Score = 78 (32.5 bits), Expect = 5.0e-08, Sum P(4) = 5.0e-08
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 708 PTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI 766
P S F + ++S K+ ++ K L + G K ++FSQ LD+L+ L
Sbjct: 693 PAASDFHLQA---MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRY 749
Query: 767 PFLRLDGTLNQQQREKVLKQFSEDNN 792
+ R+DG + R+ + +FS+ ++
Sbjct: 750 LYERIDGRVRGNLRQAAIDRFSKPDS 775
Score = 41 (19.5 bits), Expect = 5.0e-08, Sum P(4) = 5.0e-08
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + L+W++
Sbjct: 385 QLREYQLEGLNWLL 398
Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(4) = 5.0e-08
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 69 ENEIRASSENGTLAEAIAEGYSEG 92
E+E + N ++EAIA+ G
Sbjct: 44 ESESKQEKANRIISEAIAKAKERG 67
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 152 (58.6 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 60/246 (24%), Positives = 114/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 1018 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1077
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 1078 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 1131
Query: 481 LIICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L + + E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 1132 ELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 1186
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 1187 -LAPKEETIIEVELTNIQKKYYRAILEKN---FT-FLSKGGGQANVPNLLNTMMELRKCC 1241
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 1242 NHPYLI 1247
Score = 87 (35.7 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1280 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1339
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1340 RFSKPDS 1346
Score = 45 (20.9 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 47 TPNF-KTPEIKPLAARRKLIISKENEIRASS------ENGTLAEAIAEGYSEGSE 94
TP KTP+ +P + K + K + SS E L + + +G +EGSE
Sbjct: 659 TPKAPKTPK-EPKERKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSE 712
Score = 40 (19.1 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDS-DVDNI 313
+KA+ + K+ + K A NK K + ++ +D+D P S + D
Sbjct: 672 RKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPGPEEDED 731
Query: 314 VGV 316
GV
Sbjct: 732 PGV 734
Score = 37 (18.1 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 956 KLREYQLEGVNWLL 969
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 92 (37.4 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + + +LF Q T+ + +++ + N +LRLDGT + R +
Sbjct: 1023 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 1082
Query: 784 LKQFSE 789
LK+F+E
Sbjct: 1083 LKKFNE 1088
Score = 85 (35.0 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ +K Y + + +
Sbjct: 909 IRRLHKVLRPFLLRRLKKEVESQ------LPEKVEYVIKCDMSALQKILYRHMQAKGILL 962
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 963 TDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 995
Score = 79 (32.9 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 719 GILADEMGLGKTIQTIALITYLMEHKRLNG 748
Score = 56 (24.8 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 288 KSKVQSAKVNDVDDVEPISDS--DVDNIVGVGYSSEIEEMEPPSTLKCE--LRPYQKQAL 343
K +++AK DVDD + S + V ++ E +E S+L L+ YQ Q L
Sbjct: 649 KQIIETAK-QDVDDEYSMQYSARGSQSYYTVAHAIT-ERVEKQSSLLINGTLKHYQLQGL 706
Query: 344 HWMVQL 349
WMV L
Sbjct: 707 EWMVSL 712
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 120 (47.3 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 26/98 (26%), Positives = 55/98 (56%)
Query: 503 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
GD++ ++ + +L+P +LRR K+ ++ LPP IY L++ ++++Y +
Sbjct: 361 GDQKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILM 414
Query: 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ D G++ + +L +L++LR+CC+HP+L
Sbjct: 415 KD---IDILNSAGKL--DKMRLLNILMQLRKCCNHPYL 447
Score = 73 (30.8 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 186 GILADEMGLGKTLQTISLL 204
Score = 55 (24.4 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 326 EPPSTLKC-ELRPYQKQALHWMVQL-EKG 352
E PS +K +LR YQ + L+W++ L E G
Sbjct: 155 ESPSYVKWGKLRDYQVRGLNWLISLYENG 183
>ZFIN|ZDB-GENE-060825-103 [details] [associations]
symbol:zgc:153151 "zgc:153151" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957 PROSITE:PS50089
SMART:SM00184 Pfam:PF00097 Prosite:PS00518 ZFIN:ZDB-GENE-060825-103
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:CR318603 IPI:IPI00920283
Ensembl:ENSDART00000131053 GeneTree:ENSGT00700000105241 Bgee:E7F6W7
Uniprot:E7F6W7
Length = 471
Score = 158 (60.7 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 646 EELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705
+ L E+ +CP+CL+ F D V TPC H C+ CL+ W CP+C++T S++ +
Sbjct: 32 KSLHLTEECQCPVCLDVFTDPVTTPCGHNFCKTCLIQCWDNSQDYRCPLCKETFSKRPEV 91
Query: 706 TAPTGSRFQVDIEKNWVESTK 726
+ T R V I +++STK
Sbjct: 92 KSNTVLREIVQI---FMDSTK 109
Score = 133 (51.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS 711
E+ +C +CL+ F + V TPC H C+ CL W +CP C++T S + + T
Sbjct: 121 EELQCSVCLDVFNNPVTTPCGHNYCKTCLEKCWDYSHVCICPYCKETFSNRPDLKCNTAL 180
Query: 712 RFQVDI-EKN 720
R V + EKN
Sbjct: 181 REIVQLYEKN 190
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 105 (42.0 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 674 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 726
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 727 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 771
Score = 101 (40.6 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 793 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 852
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 853 LDHFNADGS 861
Score = 65 (27.9 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 509 ILADEMGLGKTIQTISFL 526
Score = 43 (20.2 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 486 ELRDYQLEGLNWL 498
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 458 TRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSW 502
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 95 (38.5 bits), Expect = 6.1e-08, Sum P(5) = 6.1e-08
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR 780
W S K+ V+ L+ G + + F+Q L +L++ L N +LR+DGT R
Sbjct: 831 WKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASR 890
Query: 781 EKVLKQFSEDNNI 793
+ ++ +++ED +I
Sbjct: 891 QPLITRYNEDKSI 903
Score = 91 (37.1 bits), Expect = 6.1e-08, Sum P(5) = 6.1e-08
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569
+++ + P +LRR K+ L LP + QV++C LT+ ++ Y+ F SK
Sbjct: 728 VLRDAINPYLLRRMKADVKMS----LSLPDKNEQVLFCRLTDEQRQVYQN-FIDSK---- 778
Query: 570 QFVEQGRILHNYASILELLLRLRQCCDHPFL 600
E +IL+ + L+ LR+ C+HP L
Sbjct: 779 ---EVYQILNGDMQVFSGLVALRKICNHPDL 806
Score = 71 (30.1 bits), Expect = 6.1e-08, Sum P(5) = 6.1e-08
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 401 GGILADAMGLGKTVMTIALL--LTHSQ 425
GGIL D MGLGKT+ IA L L++S+
Sbjct: 522 GGILGDEMGLGKTIQIIAFLAGLSYSK 548
Score = 56 (24.8 bits), Expect = 6.1e-08, Sum P(5) = 6.1e-08
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 478 GGTLIICPMTLLGQWNK 494
G T+I+CP T++ QW K
Sbjct: 562 GPTVIVCPATVMHQWVK 578
Score = 39 (18.8 bits), Expect = 6.1e-08, Sum P(5) = 6.1e-08
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 320 SEIEE-MEPPSTLKCELRPYQKQALHWMVQL 349
+E EE + P L +L YQ+ + W+ +L
Sbjct: 486 TEFEEGFKVPGFLFKKLFKYQQTGVRWLWEL 516
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 105 (42.0 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 24/110 (21%), Positives = 56/110 (50%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++ + +G E G + + +L+P +LRR K ++ LP Q++ E++
Sbjct: 684 WEDF-EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------LPAKVEQILRVEMSA 736
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+K +Y+ + R+ + + R + + L +++ L++CC+H +L+
Sbjct: 737 LQKQYYKWILTRN---YKALAKGTR--GSTSGFLNIVMELKKCCNHCYLI 781
Score = 101 (40.6 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L K L L G++ ++FSQ LD+L L+ + PF RLDG++ + R++
Sbjct: 803 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 862
Query: 784 LKQFSEDNN 792
L F+ D +
Sbjct: 863 LDHFNADGS 871
Score = 65 (27.9 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 403 ILADAMGLGKTVMTIALL 420
ILAD MGLGKT+ TI+ L
Sbjct: 519 ILADEMGLGKTIQTISFL 536
Score = 43 (20.2 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 334 ELRPYQKQALHWM 346
ELR YQ + L+W+
Sbjct: 496 ELRDYQLEGLNWL 508
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 52 TPEIKPLAARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWW 96
T E K L R + + K+ EN L + EG + + W
Sbjct: 468 TRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLAHSW 512
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 90 (36.7 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ +L + L L +G + ++F Q T+ + +++ L+ I +LRLDG+ +R +
Sbjct: 682 SGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGAL 741
Query: 784 LKQFSEDNN 792
L +F+ N+
Sbjct: 742 LDKFNAPNS 750
Score = 83 (34.3 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + E LP V+ C+++ +K Y+ + K
Sbjct: 577 IRRLHKVLRPFLLRRLKKEVESE------LPDKMEFVVRCDMSALQKVLYKHMQKG---- 626
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ G+ S+ ++ LR+ C+HPFL
Sbjct: 627 ---LLLDGKTNTGSKSLRNTMIHLRKLCNHPFL 656
Score = 72 (30.4 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIA +
Sbjct: 387 GILADEMGLGKTIQTIAFI 405
Score = 64 (27.6 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 288 KSKVQSAKVNDVDDVEPISDSDVDNIVGV--GYSSEIEE---MEPPSTLKCELRPYQKQA 342
KS + A+ ND D+ E + ++++ G EI+E M +L+PYQ +
Sbjct: 315 KSILDKAR-NDDDEYENKTKMNIEDYYTTAHGVREEIKEQHFMMGGGNPSLKLKPYQIKG 373
Query: 343 LHWMVQL 349
L WMV L
Sbjct: 374 LEWMVSL 380
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 138 (53.6 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 59/250 (23%), Positives = 110/250 (44%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G I+ A + T ++L
Sbjct: 1073 PNWEREFRTWTELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIKGAYKFHAVITTFEMIL 1132
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L + D E + + +++ L++ K + ++ + T T L N
Sbjct: 1133 TDCPE--LRNVPWRCVIID---EAHRLKNRNCKLLEGL-KMMDMEHKVLLTGTPLQNTVE 1186
Query: 481 LIICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L + + E GD E ++ +Q ILKP+MLRR K ++
Sbjct: 1187 ELFSLLNFLEPDRFPSESTFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKN----- 1241
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRIL----HNYASILELLLRL 591
L P + +I ELT +K +Y A+ +++ + G N ++L ++ L
Sbjct: 1242 -LAPKEETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMEL 1300
Query: 592 RQCCDHPFLV 601
R+CC+HP+L+
Sbjct: 1301 RKCCNHPYLI 1310
Score = 86 (35.3 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1343 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1402
Query: 786 QFSEDNN 792
+FS ++
Sbjct: 1403 RFSRPDS 1409
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 152 (58.6 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 60/246 (24%), Positives = 114/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 1019 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1078
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 1079 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 1132
Query: 481 LIICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L + + E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 1133 ELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 1187
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 1188 -LAPKEETIIEVELTNIQKKYYRAILEKN---FT-FLSKGGGQANVPNLLNTMMELRKCC 1242
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 1243 NHPYLI 1248
Score = 87 (35.7 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1281 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1340
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1341 RFSKPDS 1347
Score = 44 (20.5 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDS-DVDNI 313
KKA+ + K+ + K A NK K + ++ +D+D P S + + D
Sbjct: 673 KKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPAPEEDED 732
Query: 314 VGV 316
GV
Sbjct: 733 PGV 735
Score = 42 (19.8 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 47 TPNFKTPEI--KPLAARRKLIISKENEIRASS------ENGTLAEAIAEGYSEGSE 94
TP K P+I +P + K + K + SS E L + + +G +EGSE
Sbjct: 660 TP--KAPKIPKEPKEKKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSE 713
Score = 37 (18.1 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 957 KLREYQLEGVNWLL 970
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 152 (58.6 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 60/246 (24%), Positives = 114/246 (46%)
Query: 364 PCWEA-YRLLDERELVVYLNAFSGEATIE-FPSTLQMARGGILADAMGLGKTVMTIALLL 421
P WE +R E +VVY + + TI+ + + +G ++ + + T ++L
Sbjct: 1022 PNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1081
Query: 422 THSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGT 480
T L I D E + + +++ L++ K + ++ + T T L N
Sbjct: 1082 TDCPE--LRNIPWRCVVID---EAHRLKNRNCKLLEGL-KMMDLEHKVLLTGTPLQNTVE 1135
Query: 481 LIICPMTLLGQWNKLIQKPY--EEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPIL 535
+ + L + + E GD E ++ +Q+ILKP+MLRR K ++
Sbjct: 1136 ELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKN----- 1190
Query: 536 VLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCC 595
L P + +I ELT +K +Y A+ +++ F F+ +G N ++L ++ LR+CC
Sbjct: 1191 -LAPKEETIIEVELTNIQKKYYRAILEKN---FT-FLSKGGGQANVPNLLNTMMELRKCC 1245
Query: 596 DHPFLV 601
+HP+L+
Sbjct: 1246 NHPYLI 1251
Score = 87 (35.7 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1284 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1343
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1344 RFSKPDS 1350
Score = 44 (20.5 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDN 312
KKA+ + K+ + K A NK K + ++ +D+D P S D+
Sbjct: 676 KKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEDD 733
Score = 41 (19.5 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 68 KENEIRASSENGTLAEAIAEGYSEGSE 94
K + + SE L + + +G +EGSE
Sbjct: 690 KSSNKKPDSEASALKKKVNKGKTEGSE 716
Score = 37 (18.1 bits), Expect = 6.8e-08, Sum P(4) = 6.8e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 960 KLREYQLEGVNWLL 973
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 88 (36.0 bits), Expect = 6.9e-08, Sum P(5) = 6.9e-08
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K +L + L L + K +LF Q T+ + +++ + +LRLDGT + R +
Sbjct: 878 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 937
Query: 784 LKQFSE 789
LK F+E
Sbjct: 938 LKTFNE 943
Score = 83 (34.3 bits), Expect = 6.9e-08, Sum P(5) = 6.9e-08
Identities = 18/93 (19%), Positives = 46/93 (49%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K + + LP VI C+++ ++ Y + + +
Sbjct: 764 IRRLHKVLRPFLLRRLKKEVEAQ------LPEKVEYVIKCDMSALQRVLYRHMQAKGVLL 817
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D + + +++ +++LR+ C+HP++
Sbjct: 818 TDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM 850
Score = 78 (32.5 bits), Expect = 6.9e-08, Sum P(5) = 6.9e-08
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 402 GILADAMGLGKTVMTIAL---LLTHSQRGG 428
GILAD MGLGKT+ TIAL L+ H + G
Sbjct: 574 GILADEMGLGKTIQTIALITYLMEHKRING 603
Score = 52 (23.4 bits), Expect = 6.9e-08, Sum P(5) = 6.9e-08
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 291 VQSAKVNDVDDVEPISDS---DVDNIVGVGYSSEIEEMEPPSTLKCE--LRPYQKQALHW 345
+++AK DVDD +S + + + V ++ E ++ S L L+ YQ + L W
Sbjct: 506 IENAK-QDVDDEYGVSQALARGLQSYYAVAHAVT-ERVDKQSALMVNGVLKQYQIKGLEW 563
Query: 346 MVQL 349
+V L
Sbjct: 564 LVSL 567
Score = 47 (21.6 bits), Expect = 6.9e-08, Sum P(5) = 6.9e-08
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 476 INGGTLIICPMTLLGQW 492
ING LII P++ L W
Sbjct: 601 INGPFLIIVPLSTLSNW 617
>UNIPROTKB|Q96L91 [details] [associations]
symbol:EP400 "E1A-binding protein p400" species:9606 "Homo
sapiens" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IDA] [GO:0043968
"histone H2A acetylation" evidence=IDA] [GO:0043967 "histone H4
acetylation" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00717 GO:GO:0005524
GO:GO:0003677 GO:GO:0016607 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR017877 PROSITE:PS50090 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 KO:K11320 EMBL:AY044869 EMBL:AC137590 EMBL:AC137632
EMBL:AB040931 EMBL:AK096311 EMBL:BC037208 EMBL:BC064554
EMBL:AB058721 EMBL:U80743 IPI:IPI00064931 IPI:IPI00167535
IPI:IPI00783692 IPI:IPI00798339 IPI:IPI00878154 RefSeq:NP_056224.3
UniGene:Hs.595201 ProteinModelPortal:Q96L91 DIP:DIP-29915N
IntAct:Q96L91 MINT:MINT-1897496 STRING:Q96L91 PhosphoSite:Q96L91
DMDM:209572748 PaxDb:Q96L91 PRIDE:Q96L91 DNASU:57634
Ensembl:ENST00000330386 Ensembl:ENST00000332482
Ensembl:ENST00000333577 Ensembl:ENST00000389561
Ensembl:ENST00000389562 Ensembl:ENST00000537902
Ensembl:ENST00000541296 GeneID:57634 KEGG:hsa:57634 UCSC:uc001ujm.3
UCSC:uc001ujn.3 UCSC:uc021rgq.1 CTD:57634 GeneCards:GC12P132434
H-InvDB:HIX0021564 HGNC:HGNC:11958 HPA:HPA016704 MIM:606265
neXtProt:NX_Q96L91 PharmGKB:PA27808 HOVERGEN:HBG051488
InParanoid:Q96L91 OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400
GenomeRNAi:57634 NextBio:64345 ArrayExpress:Q96L91 Bgee:Q96L91
CleanEx:HS_EP400 Genevestigator:Q96L91 GermOnline:ENSG00000183495
Uniprot:Q96L91
Length = 3159
Score = 101 (40.6 bits), Expect = 7.1e-08, Sum P(4) = 7.1e-08
Identities = 37/160 (23%), Positives = 75/160 (46%)
Query: 456 MKKEPKSLSIDKLIKQTNTLINGGTLI--ICPMTLLGQWNKLIQKPYEEGDERGLKLV-- 511
++ + + L ID + NT + T++ + P + ++ P EE + K+V
Sbjct: 1238 LQSQQRLLLIDSPLH--NTFLELWTMVHFLVPGISRPYLSSPLRAPSEESQDYYHKVVIR 1295
Query: 512 -QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +P +LRRTK +++ L V+ C L+ +K YE + + + +
Sbjct: 1296 LHRVTQPFILRRTKRDVEKQ------LTKKYEHVLKCRLSNRQKALYEDVILQPGTQ--E 1347
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
++ G ++ ++L +L+RL++ C+HP LV R Y
Sbjct: 1348 ALKSG----HFVNVLSILVRLQRICNHPGLVEPRHPGSSY 1383
Score = 98 (39.6 bits), Expect = 7.1e-08, Sum P(4) = 7.1e-08
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 706 TAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNN 765
TAP +F ++ +S K+ L L+ L G + ++ SQ LD+L++ L+ +
Sbjct: 1880 TAPRLLQFP-ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILMLDILEMFLNFHY 1938
Query: 766 IPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ ++R+D + +QR+++++ F+ D I
Sbjct: 1939 LTYVRIDENASSEQRQELMRSFNRDRRI 1966
Score = 65 (27.9 bits), Expect = 7.1e-08, Sum P(4) = 7.1e-08
Identities = 27/106 (25%), Positives = 43/106 (40%)
Query: 257 AEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGV 316
A+ P D +RK L D + A + + D+ DV ++++ + G
Sbjct: 1016 ADDCPGDRESRK-DLVLIDSLFIMDQFKAAERMNIGKPNAKDIADVTAVAEAILPK--GS 1072
Query: 317 GYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK----GRCLDEA 358
+ + PS L LR YQK L W+ +L + G DEA
Sbjct: 1073 ARVTTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEA 1118
Score = 59 (25.8 bits), Expect = 7.1e-08, Sum P(4) = 7.1e-08
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 402 GILADAMGLGKTVMTIA 418
GILAD GLGKTV IA
Sbjct: 1112 GILADEAGLGKTVQIIA 1128
Score = 46 (21.3 bits), Expect = 5.0e-06, Sum P(4) = 5.0e-06
Identities = 19/96 (19%), Positives = 42/96 (43%)
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISD 307
++ FKK + P Y R+ LD ++ + + +S +ND +V+ ++
Sbjct: 400 MMDFLAFKKKHYAPLQAYLRQNDLDIEE------EEEEEEEEEEKSEVIND--EVKVVTG 451
Query: 308 SDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQAL 343
D V ++++ + + + +P+Q QAL
Sbjct: 452 KDGQTGTPVAIATQLPP-KVSAAFSSQQQPFQ-QAL 485
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 93 (37.8 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 25/105 (23%), Positives = 54/105 (51%)
Query: 496 IQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD 555
++ P EE E ++ +Q L+P +LRR K ++ LP +++ EL++ +
Sbjct: 567 LEAPDEE-QEAYIRSLQEHLQPYILRRLKKDVEKS------LPSKSERILRVELSDLQMY 619
Query: 556 FYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+Y+ + R+ Q + G + S+L +++ L++ +HP+L
Sbjct: 620 WYKNILTRNYRVLTQSISSG----SQISLLNIVVELKKASNHPYL 660
Score = 90 (36.7 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE 781
+ S K+ +L K L L G + ++FSQ LD+L LS P RLDGT+ R
Sbjct: 687 MNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRR 746
Query: 782 KVLKQFSEDNN 792
+ F+ N+
Sbjct: 747 TSIDHFNAPNS 757
Score = 82 (33.9 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 402 GILADAMGLGKTVMTIALL--LTHSQR 426
GILAD MGLGKTV T+A L L HS R
Sbjct: 396 GILADEMGLGKTVQTVAFLSYLAHSLR 422
Score = 45 (20.9 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQL----EKGRCLDE 357
E +P ELR +Q ++WM L E G DE
Sbjct: 364 EQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADE 401
>UNIPROTKB|E2QWV6 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:AAEX03014584 EMBL:AAEX03014585
EMBL:AAEX03014586 Ensembl:ENSCAFT00000010370 Uniprot:E2QWV6
Length = 3002
Score = 104 (41.7 bits), Expect = 7.2e-08, Sum P(5) = 7.2e-08
Identities = 24/89 (26%), Positives = 49/89 (55%)
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN 764
+TA RF ++ +S K+ L L+ L G + ++ SQ LD+L++ L+ +
Sbjct: 1752 MTALRSLRFP-ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFH 1810
Query: 765 NIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ ++R+D N +QR+++++ F+ D I
Sbjct: 1811 YLTYIRIDENANSEQRQELMRSFNRDRRI 1839
Score = 98 (39.6 bits), Expect = 7.2e-08, Sum P(5) = 7.2e-08
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 496 IQKPYEEGDERGLKLV---QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
++ P +E + K+V + +P +LRRTK +++ L V+ C L+
Sbjct: 1235 LKAPNDENQDYYHKVVIRLHRVTQPFILRRTKRDVEKQ------LTKKYEHVLKCRLSSR 1288
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
+K YE + + + + ++ G ++ +L +LLRL++ C+HP LV R Y+
Sbjct: 1289 QKALYEDVILQPGTQ--EALKSG----HFVDVLSILLRLQRICNHPGLVEPRLPESSYT 1341
Score = 60 (26.2 bits), Expect = 7.2e-08, Sum P(5) = 7.2e-08
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 286 ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
A + + + D+ +V ++++ + G S ++ PS L LR YQK L W
Sbjct: 1001 AERMSIGNPHTKDIAEVTAVAEALLPK--GSARVSPTVKLTAPSLLYGVLRDYQKIGLDW 1058
Query: 346 MVQLEK----GRCLDEA 358
+ +L + G DEA
Sbjct: 1059 LAKLYRKNLNGILADEA 1075
Score = 59 (25.8 bits), Expect = 7.2e-08, Sum P(5) = 7.2e-08
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 402 GILADAMGLGKTVMTIA 418
GILAD GLGKTV IA
Sbjct: 1069 GILADEAGLGKTVQIIA 1085
Score = 45 (20.9 bits), Expect = 7.2e-08, Sum P(5) = 7.2e-08
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKD 275
++ FKK + P Y R+ LD ++
Sbjct: 395 MMDFLAFKKKHYAPLQAYLRQNDLDLEE 422
Score = 41 (19.5 bits), Expect = 6.2e-06, Sum P(4) = 6.2e-06
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 266 TRKRPLDSKDGCGLHASLLHANKSKVQSAKVND-VDDVEPISDSDVDNIVGVGYSSEIEE 324
+R + LD+ L + L K K ++ +D V+D E + + N V + +E+
Sbjct: 873 SRPKGLDALPEAFLESGL-SGRKRKASTSLTDDEVEDEEETIEEEEANEGAVDHQAELSN 931
Query: 325 MEPPSTL 331
+ + L
Sbjct: 932 LAKEAEL 938
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 404 LADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSL 463
+A A G G + ++ S S + + S G QSP P+
Sbjct: 665 IAPASGSGLSPARVSAGNRPSSAANKS-LSPVTSRSPGAAVSAPPKPQSPAQNAAPPQDS 723
Query: 464 SIDKLIKQ 471
S DKL++Q
Sbjct: 724 SQDKLVEQ 731
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 162 (62.1 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 61/244 (25%), Positives = 112/244 (45%)
Query: 366 WEA-YRLLDERELVVYLNA-FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
WE +R E +VY + S + ++ + A+G L+ + T ++L
Sbjct: 524 WEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILAD 583
Query: 424 SQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGTLI 482
L I + D E + + +++ L++ K ++++ + T T L N +
Sbjct: 584 CPE--LKKIHWSCVIID---EAHRLKNRNCKLLEGL-KLMALEHKVLLTGTPLQNSVEEL 637
Query: 483 ICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
+ L Q+ E GD E +K +QSILKP+MLRR K ++ L
Sbjct: 638 FSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------L 691
Query: 538 PPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
P +I ELT +K +Y A+ +++ F F+ +G HN +++ ++ LR+CC+H
Sbjct: 692 APKQETIIEVELTNIQKKYYRAILEKN---FS-FLTKGANQHNMPNLINTMMELRKCCNH 747
Query: 598 PFLV 601
P+L+
Sbjct: 748 PYLI 751
Score = 79 (32.9 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 784 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 843
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 844 RFCKPDS 850
Score = 43 (20.2 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 593 QC-CDHPFLVMSRGDTQDYSDLNKLAKRFL----KGSSN--ALEGEDKDVPSRAYVQEVV 645
QC C H M G D ++ K K ++ K +N A+EGE +PS+ + +V
Sbjct: 1937 QCHCKHMERWM-HGLENDEFEIEK-PKAYIPDLFKSKTNTIAMEGEPTAIPSQPF--KVK 1992
Query: 646 EELQK 650
EL K
Sbjct: 1993 HELLK 1997
Score = 39 (18.8 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 460 QLREYQLEGMNWLL 473
Score = 37 (18.1 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 30 LHMANHDPAAAINIIFDTPNFKTP 53
L + NH P + ++ FD +K+P
Sbjct: 15 LKVLNHSPMSDASVNFD---YKSP 35
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 162 (62.1 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 61/244 (25%), Positives = 112/244 (45%)
Query: 366 WEA-YRLLDERELVVYLNA-FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTH 423
WE +R E +VY + S + ++ + A+G L+ + T ++L
Sbjct: 524 WEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILAD 583
Query: 424 SQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNT-LINGGTLI 482
L I + D E + + +++ L++ K ++++ + T T L N +
Sbjct: 584 CPE--LKKIHWSCVIID---EAHRLKNRNCKLLEGL-KLMALEHKVLLTGTPLQNSVEEL 637
Query: 483 ICPMTLL--GQWNKLIQKPYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVL 537
+ L Q+ E GD E +K +QSILKP+MLRR K ++ L
Sbjct: 638 FSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN------L 691
Query: 538 PPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597
P +I ELT +K +Y A+ +++ F F+ +G HN +++ ++ LR+CC+H
Sbjct: 692 APKQETIIEVELTNIQKKYYRAILEKN---FS-FLTKGANQHNMPNLINTMMELRKCCNH 747
Query: 598 PFLV 601
P+L+
Sbjct: 748 PYLI 751
Score = 79 (32.9 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 784 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 843
Query: 786 QFSEDNN 792
+F + ++
Sbjct: 844 RFCKPDS 850
Score = 39 (18.8 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 334 ELRPYQKQALHWMV 347
+LR YQ + ++W++
Sbjct: 460 QLREYQLEGMNWLL 473
Score = 37 (18.1 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 30 LHMANHDPAAAINIIFDTPNFKTP 53
L + NH P + ++ FD +K+P
Sbjct: 15 LKVLNHSPMSDASVNFD---YKSP 35
>UNIPROTKB|L7N089 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] GeneTree:ENSGT00530000063427 EMBL:AAEX03014584
Ensembl:ENSCAFT00000010365 Uniprot:L7N089
Length = 3110
Score = 104 (41.7 bits), Expect = 8.5e-08, Sum P(5) = 8.5e-08
Identities = 24/89 (26%), Positives = 49/89 (55%)
Query: 705 ITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN 764
+TA RF ++ +S K+ L L+ L G + ++ SQ LD+L++ L+ +
Sbjct: 1861 MTALRSLRFP-ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFH 1919
Query: 765 NIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ ++R+D N +QR+++++ F+ D I
Sbjct: 1920 YLTYIRIDENANSEQRQELMRSFNRDRRI 1948
Score = 98 (39.6 bits), Expect = 8.5e-08, Sum P(5) = 8.5e-08
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 496 IQKPYEEGDERGLKLV---QSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEA 552
++ P +E + K+V + +P +LRRTK +++ L V+ C L+
Sbjct: 1271 LKAPNDENQDYYHKVVIRLHRVTQPFILRRTKRDVEKQ------LTKKYEHVLKCRLSSR 1324
Query: 553 EKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
+K YE + + + + ++ G ++ +L +LLRL++ C+HP LV R Y+
Sbjct: 1325 QKALYEDVILQPGTQ--EALKSG----HFVDVLSILLRLQRICNHPGLVEPRLPESSYT 1377
Score = 60 (26.2 bits), Expect = 8.5e-08, Sum P(5) = 8.5e-08
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 286 ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
A + + + D+ +V ++++ + G S ++ PS L LR YQK L W
Sbjct: 1037 AERMSIGNPHTKDIAEVTAVAEALLPK--GSARVSPTVKLTAPSLLYGVLRDYQKIGLDW 1094
Query: 346 MVQLEK----GRCLDEA 358
+ +L + G DEA
Sbjct: 1095 LAKLYRKNLNGILADEA 1111
Score = 59 (25.8 bits), Expect = 8.5e-08, Sum P(5) = 8.5e-08
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 402 GILADAMGLGKTVMTIA 418
GILAD GLGKTV IA
Sbjct: 1105 GILADEAGLGKTVQIIA 1121
Score = 45 (20.9 bits), Expect = 8.5e-08, Sum P(5) = 8.5e-08
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKD 275
++ FKK + P Y R+ LD ++
Sbjct: 395 MMDFLAFKKKHYAPLQAYLRQNDLDLEE 422
Score = 41 (19.5 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 266 TRKRPLDSKDGCGLHASLLHANKSKVQSAKVND-VDDVEPISDSDVDNIVGVGYSSEIEE 324
+R + LD+ L + L K K ++ +D V+D E + + N V + +E+
Sbjct: 909 SRPKGLDALPEAFLESGL-SGRKRKASTSLTDDEVEDEEETIEEEEANEGAVDHQAELSN 967
Query: 325 MEPPSTL 331
+ + L
Sbjct: 968 LAKEAEL 974
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 404 LADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSL 463
+A A G G + ++ S S + + S G QSP P+
Sbjct: 701 IAPASGSGLSPARVSAGNRPSSAANKS-LSPVTSRSPGAAVSAPPKPQSPAQNAAPPQDS 759
Query: 464 SIDKLIKQ 471
S DKL++Q
Sbjct: 760 SQDKLVEQ 767
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 97 (39.2 bits), Expect = 9.1e-08, Sum P(5) = 9.1e-08
Identities = 23/90 (25%), Positives = 50/90 (55%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ +L+P +LRR KS ++ +LP +++V Y L++ ++++Y + + D
Sbjct: 336 LHKVLQPFLLRRIKSDVEKS-----LLPKKEVKV-YVGLSKMQREWYTKVLMKD---IDI 386
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFL 600
G++ A ++ +L+ LR+C +HP+L
Sbjct: 387 INGAGKV--EKARLMNILMHLRKCVNHPYL 414
Score = 84 (34.6 bits), Expect = 9.1e-08, Sum P(5) = 9.1e-08
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 696 RKTISRQDLIT-APTGSRFQVDIEKNWVEST-KIAVLLKELENLCLSGSKSILFSQWTAF 753
RK ++ L A G F D ++ V+++ K+ VL K L GS+ ++FSQ++
Sbjct: 406 RKCVNHPYLFDGAEPGPPFTTD--QHLVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRM 463
Query: 754 LDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788
LDLL+ + + RLDG+ + R ++ ++
Sbjct: 464 LDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYN 498
Score = 69 (29.3 bits), Expect = 9.1e-08, Sum P(5) = 9.1e-08
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+++
Sbjct: 153 GILADEMGLGKTLQTISMI 171
Score = 47 (21.6 bits), Expect = 9.1e-08, Sum P(5) = 9.1e-08
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 334 ELRPYQKQALHWMVQLEKGR 353
E+R YQ + L+W+ L+ +
Sbjct: 131 EMRDYQVRGLNWLASLQHNK 150
Score = 44 (20.5 bits), Expect = 9.1e-08, Sum P(5) = 9.1e-08
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 297 NDVDDVEPI-SDSDVDNIVGVGYSSEIEEMEPPST 330
N+++D EP+ +DS++ G S E+++ EP S+
Sbjct: 8 NEIND-EPMDTDSNIPESSGNDPSMEVDD-EPESS 40
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 93 (37.8 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR 780
W + K +L + L L +G + ++F Q T +D+++ L NI +LRLDG +R
Sbjct: 1083 WRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDER 1142
Query: 781 EKVLKQFS 788
++L+ F+
Sbjct: 1143 SELLRLFN 1150
Score = 86 (35.3 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 18/93 (19%), Positives = 47/93 (50%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + +L+P +LRR K ++E LP +V+ C+++ ++ Y+ + K ++
Sbjct: 980 IRRLHKVLRPFLLRRLKKDVEKE------LPDKVEKVVKCKMSALQQIMYQQMLKYRRLF 1033
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+ + + +++L++ C+HPF+
Sbjct: 1034 IGD--QNNKKMVGLRGFNNQIMQLKKICNHPFV 1064
Score = 75 (31.5 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 402 GILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 788 GILADEMGLGKTIQTISLL 806
Score = 57 (25.1 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 289 SKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQ 348
S V K + DD + S+ D N+ +I++ +P + L+ YQ + L WMV
Sbjct: 723 SMVPKMKDEEYDDDDDNSNVDYYNVAH-RIKEDIKK-QPSILVGGTLKDYQIKGLQWMVS 780
Query: 349 L 349
L
Sbjct: 781 L 781
Score = 53 (23.7 bits), Expect = 2.3e-07, Sum P(5) = 2.3e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 266 TRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVD 300
TR PLDSKD AS+ A S V +AK +D
Sbjct: 342 TRNAPLDSKDEN--FASVSPAGPSSVHNAKNGTLD 374
Score = 42 (19.8 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 476 INGGTLIICPMTLLGQWNKLIQK 498
I G L+I P++ L W+ K
Sbjct: 815 IRGPYLVIVPLSTLSNWSSEFAK 837
WARNING: HSPs involving 290 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 812 797 0.00097 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 540
No. of states in DFA: 623 (66 KB)
Total size of DFA: 401 KB (2195 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.98u 0.08s 72.06t Elapsed: 00:00:04
Total cpu time: 72.04u 0.08s 72.12t Elapsed: 00:00:04
Start: Tue May 21 18:41:03 2013 End: Tue May 21 18:41:07 2013
WARNINGS ISSUED: 2