BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003540
(812 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 575 bits (1483), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/519 (57%), Positives = 361/519 (69%), Gaps = 20/519 (3%)
Query: 1 MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEI----- 55
MGTKV+D+++STVRSVVG ++S+MDIIRALHMANHDP AAINIIFDTP+F P++
Sbjct: 1 MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSFAKPDVATPTP 60
Query: 56 -------KPLAARRKLIISKENEIRASSENGTLAEAIAEGYSE---GSEWWFVGWGDVPA 105
+ + + + A+ E++ G E G+EWWFVG ++
Sbjct: 61 SGSNGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAG 120
Query: 106 MSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEI 165
+ST KGRKL+ GDE+ FTFP + + F R R A+ S+IVRFSTKD+GEI
Sbjct: 121 LSTCKGRKLKSGDELVFTFPHSKGLKPETTPGKRGFGRGRPALRGASDIVRFSTKDSGEI 180
Query: 166 GRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSL 225
GRIP+EW+RCLLPLVRDKK+ I G CKSAPE L IMDTI+LS+ VYINSSMF+KH ATS
Sbjct: 181 GRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATSF 240
Query: 226 KAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLH 285
K SN+AE+S + HPLPNLFRLLG+ PFKKAEFTP D Y++KRPL SKDG + SLL
Sbjct: 241 KTASNTAEES--MFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIPTSLLQ 298
Query: 286 ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
NK K + N ++ + ISD D+DNIVGVG SS ++EME P TL CELRPYQKQALHW
Sbjct: 299 LNKVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKEMETPHTLLCELRPYQKQALHW 358
Query: 346 MVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405
M QLEKG C DEAAT LHPCWEAY L D+RELVVYLN+F+G+ATI FPSTLQMARGGILA
Sbjct: 359 MTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGILA 418
Query: 406 DAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI 465
DAMGLGKTVMTI+LLL HS + +G + D I SP + K K L
Sbjct: 419 DAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPV--KATKFLGF 476
Query: 466 DK-LIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEEG 503
DK L++Q + L NGG LI+CPMTLLGQW I+ + G
Sbjct: 477 DKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPG 515
Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/315 (82%), Positives = 285/315 (90%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P WNKL+QKP+EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA
Sbjct: 619 LRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 678
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D +VIYCEL+E+E+DFY+ALFKRSKVKFDQFVEQG++LHNYASILELLLRLRQCCDHPFL
Sbjct: 679 DARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFL 738
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL 660
VMSRGDT +YSDLNKL+KRFL G S+ LE E KDVPS A+VQEVVEEL+KGEQGECPICL
Sbjct: 739 VMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICL 798
Query: 661 EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKN 720
EA EDAVLTPCAHRLCRECLL SW+ TSGLCPVCR T+S+Q+LITAPT SRFQVD+EKN
Sbjct: 799 EALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRFQVDVEKN 858
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQR 780
WVES+KI LL+ELE L SGSKSILFSQWTAFLDLLQIPLSRNN F+RLDGTL+QQQR
Sbjct: 859 WVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQR 918
Query: 781 EKVLKQFSEDNNIMV 795
EKVLK+FSED +I+V
Sbjct: 919 EKVLKEFSEDGSILV 933
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 247/311 (79%), Gaps = 5/311 (1%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L + P W+KLIQKPYE GD RGLKL+++IL+P+MLRRTK + D+EG IL LPP
Sbjct: 868 LHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPT 927
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D+QVI CE +EAE+DFY ALFKRSKV+FDQFV QG++LHNYA+ILELLLRLRQCC+HPFL
Sbjct: 928 DVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFL 987
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL 660
VMSR D+Q Y+DL+ LA+RFL + +++ ++ PSRAY++EV+++L+ G ECPICL
Sbjct: 988 VMSRADSQQYADLDSLARRFLDNNPDSV---SQNAPSRAYIEEVIQDLRDGNSKECPICL 1044
Query: 661 EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKN 720
E+ +D VLTPCAHR+CRECLL SW++P+ GLCP+CR + R +LI+ PT S F+VD+ KN
Sbjct: 1045 ESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCPTDSIFRVDVVKN 1104
Query: 721 WVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQ 778
W ES+K++ LLK LE + SGS KSI+FSQWT+FLDLL+IPL R FLR DG L Q+
Sbjct: 1105 WKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQK 1164
Query: 779 QREKVLKQFSE 789
REKVLK+F+E
Sbjct: 1165 GREKVLKEFNE 1175
Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 182/400 (45%), Positives = 234/400 (58%), Gaps = 40/400 (10%)
Query: 94 EWWFVGWGDVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSE 153
+W+ VG V A STSKGRKL + V FTF + K P+
Sbjct: 395 DWYLVGRSLVTATSTSKGRKLEDNEIVNFTFS----SVAKWKVPN--------------- 435
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
IVRFSTK GEIGR+P EWS + L+R KV++LG C +AP L +M I+L + YI+
Sbjct: 436 IVRFSTKRCGEIGRLPMEWSNWAVSLLRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIH 495
Query: 214 SSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDS 273
SS+F ++ + GS+ +S HPL LF+ L I P++KAEFTP +L +RKR L+
Sbjct: 496 SSIFTDVSKSTWRIGSSPNLEST--LHPLLQLFKHLTIKPYQKAEFTPEELNSRKRSLNL 553
Query: 274 KDGCGLHASLLH-ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
+D A+LL A + K + D E +S ++ +VG S +EEME PSTL
Sbjct: 554 EDDYDERAALLAIAKRRKGCQQSLEQNKDEEEAPESYMNRVVGAADSYNLEEMEAPSTLT 613
Query: 333 CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEF 392
C LRPYQKQAL+WM + EKG +++AA TLHPCWEAYR+ DER +YLN FSGEATI+F
Sbjct: 614 CNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQF 673
Query: 393 PSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQS 452
P+ QMARGGILADAMGLGKTVMTIAL+L ++P G E D+
Sbjct: 674 PTATQMARGGILADAMGLGKTVMTIALIL--------------ARPGRGNPENEDVLVAD 719
Query: 453 PNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
N K+ K + + T GGTLIICPM LL QW
Sbjct: 720 VNADKRNRKEIH----MALTTVKAKGGTLIICPMALLSQW 755
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 177/349 (50%), Gaps = 39/349 (11%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E GD R L +VQ++L+P++LRRTK +G P+++LPP
Sbjct: 713 LGVEPWNNFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTKDMKTPDGEPLVLLPP 772
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++++ EL+E E+D Y +F ++K F Q VE G ++ + +I +LRLRQ C HP
Sbjct: 773 KQIEIVNVELSETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPI 832
Query: 600 LVMSRGDTQD----------------YSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
LV +R D DL L F + A + ++ + A
Sbjct: 833 LVRNRDIVADEVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHA---- 888
Query: 644 VVEELQKGEQGECPICLEA-FEDAVLTPCAHRLCRECLLGSWKTPTSGL----CPVCRKT 698
+E+++ + ECP+C E D +T C H C++CLL K T C CR+
Sbjct: 889 -LEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREP 947
Query: 699 ISRQDLI--------TAPTGSRFQVDIEKNWVE--STKIAVLLKELENLCLSGS--KSIL 746
I+++DL + + ++ +++ V S K+ L+ EL L KS++
Sbjct: 948 INKRDLFEVVRHDDDSDMMSKKPRISLQRVGVNASSAKVVALMSELRALRREHPKMKSVV 1007
Query: 747 FSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
FSQ+T+FL L++ L+R NI FLRLDG++ Q+ R VL +F+E +
Sbjct: 1008 FSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTI 1056
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 227/549 (41%), Gaps = 103/549 (18%)
Query: 1 MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD--TPNFKTPEIKPL 58
+G KV+++VLS +RS G +N++ A+N+ FD F +P
Sbjct: 106 IGDKVSEDVLSAIRSNCG---NNIE-------------RAVNMYFDGTYKKFMKKSTRPA 149
Query: 59 AARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKL-RRG 117
R S R + +G I +E + +G V +T G L + G
Sbjct: 150 PPRPAASSS-----RTPNVSGERTIPIQTSKRMPNERYIGAFG-VEGWATRSGTNLLKHG 203
Query: 118 DEVTFTF------PLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHE 171
D V P KS PS+ F R+ V +VRF+T+ E+GR+ E
Sbjct: 204 DIVKIERQKRAPPPTKSKGKAGPVTPSRGFGAPRRQDV----VVRFTTQSGTEVGRLARE 259
Query: 172 WSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRV-YINSSMFRK-------HHAT 223
+ + L+ +K G APE L DTI L +R +NS+ F + A
Sbjct: 260 AANWVSALIDEKICRFEGTVVYAPERLRTNDTIFLQLRCSLLNSAFFSRPFQLADDRSAA 319
Query: 224 SLKAGSNSAEDSVSLCH-PLPNLFRLLGITPFKKAEFTPSDLY----------TRKRPLD 272
+ E ++ + L LF+ + + P T +++ +
Sbjct: 320 FFNQNETNDEKTLRMRQVALVKLFQEINLHPTLTNSATKDGRKGLLQAAEQDEEKQKEVK 379
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIE--EMEPPST 330
DG G + N + S++ +D +D E + +D + S + E EP T
Sbjct: 380 KSDGNGTN------NTKEANSSQSSDTEDGEELEQDQLDALYKKAQSFDFNTPEAEPADT 433
Query: 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATT---LHPCWEAY----RLLDEREL------ 377
LR YQKQALHWM+ EK DE + +HP WE Y + +DE +L
Sbjct: 434 FAMTLRKYQKQALHWMMAKEK----DEKSHREPLMHPLWEQYEWPLKDVDENDLPQIEGQ 489
Query: 378 -VVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS 436
Y+N +SG+ +++FP Q GGILAD MGLGKT+ ++L+ TH L QS
Sbjct: 490 SKFYVNPYSGDLSLDFPVQEQHCLGGILADEMGLGKTIQMLSLVHTHRSEVALEARQSVV 549
Query: 437 QPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLING--GTLIICPMTLLGQWNK 494
S+ + +L K + ++++ TL++ PM+LL QW
Sbjct: 550 ARSNVN---------------------QLTRLGKNSESILDAPCTTLVVAPMSLLSQWQS 588
Query: 495 LIQKPYEEG 503
+K ++G
Sbjct: 589 EAEKASKDG 597
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 177/358 (49%), Gaps = 52/358 (14%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E D R L +VQ++L+P++LRRTK+ EG P++ LP
Sbjct: 750 LQVEPWNNFSFWKTFITVPFESKDYVRALNVVQTVLEPLVLRRTKTMKTPEGEPLVPLPR 809
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
+ ++ EL+E E++ Y+ +F R+K F+ +E G +L ++++I +LRLRQ C HP
Sbjct: 810 RTIDIVEVELSEQEREIYDYIFTRAKRTFNDNIEAGTLLKSFSTIFAQILRLRQTCCHPI 869
Query: 600 LVMSR----------------GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
L ++ + +D DL +L RF NA E +D PS +
Sbjct: 870 LTRNKTIVADEEDAAATADAANELKDDMDLQELIDRFSASMENADTAEAQD-PSAKFTTH 928
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCP----VCRKT 698
+ ++Q GECPIC E D +T C H C++CL + T P CR
Sbjct: 929 ALRQIQTESSGECPICSEEPMIDPAVTACWHSACKKCLEDYIRHQTDKGVPPRCFSCRAP 988
Query: 699 ISRQDLI-----TAPTGSRFQVDIEKNWVEST-----------------------KIAVL 730
++ +D+ +P+ + + D+ + S+ KI L
Sbjct: 989 VTSRDIFQVIRHQSPSSTPTETDLYSSTPASSPHPAPRISLRRIHPLSPSAHTSAKIHAL 1048
Query: 731 LKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788
+ L N + +KS++FSQ+T+FLDL+ L++ I ++RLDGT+ Q+ R +VL +F+
Sbjct: 1049 INHL-NRVPANTKSVVFSQFTSFLDLIGAQLTKAGISYVRLDGTMPQKARAEVLAEFN 1105
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 168/381 (44%), Gaps = 69/381 (18%)
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
+ RF+ K EIGR+P E + + L+ K G C AP+ + + DTI L + Y+
Sbjct: 295 LTRFTNKSGQEIGRLPRETAEWVSTLIDQKICRFEGICVFAPDRVRVNDTIYLQLWCYLR 354
Query: 214 SSMF---------RKHHATSLKAGSNSAEDSVSLCH--PLPNLFRLLGITPFKKAEFTPS 262
F + +T+ SAE+ L LF +G+ P T +
Sbjct: 355 KEAFLPRNLWNMGDDNRSTAFFEEQESAEEKQLRLRQVALVKLFDEIGLQPT-----TVN 409
Query: 263 DLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGV-----G 317
D+ + + K+G A + + K N+ + E + + D + +
Sbjct: 410 DMTKKHK----KEGLLRAAEIAEQYDKTKREGKSNESSEDEESPELEEDQLDTLYKKAQS 465
Query: 318 YSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK----GRCLDEAATTLHPCWEAY---- 369
+ + E +PP + LR YQ+QALHWM+ EK GR L ++HP WE Y
Sbjct: 466 FDFNMPEAQPPPSFVLNLRKYQRQALHWMLAKEKDKKSGREL-----SMHPLWEEYTWPT 520
Query: 370 RLLDERELVV-------YLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
+ +D+++L Y+N +SGE +++FP+ Q GGILAD MGLGKT+ ++L+
Sbjct: 521 KDVDDKDLPAVEGQAHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLI-- 578
Query: 423 HSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLI 482
HS R Q S ++ + + P S S ++ NT TL+
Sbjct: 579 HSHRNVSPSRQGPSSSTE---------------LVRMPSSSS--AILPAPNT-----TLV 616
Query: 483 ICPMTLLGQWNKLIQKPYEEG 503
+ P +LL QW K E+G
Sbjct: 617 VAPTSLLSQWESEAMKASEQG 637
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 171/364 (46%), Gaps = 56/364 (15%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E + R + +VQ++L+P++LRRTKS EG P++ LP
Sbjct: 700 LRVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPK 759
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
+++ EL E E++ Y ++ R+K F+ V G +L +Y++I LLRLRQ C HP
Sbjct: 760 RTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPI 819
Query: 600 LVMSRG----------------DTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
L ++ D +D DL +L RF +S+A + PS +
Sbjct: 820 LTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAH 879
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTP----TSGLCPVCRKT 698
+ ++Q GECPIC E D +T C H C+ CL + C CR
Sbjct: 880 ALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRAD 939
Query: 699 ISRQDLI---------TAPTGS------------------------RFQVDIEKNWVEST 725
++ QD+ T PT R + + S
Sbjct: 940 LNPQDIFEVVRYQSPNTTPTEQTPSSIGGDNVYSSSQPPPPPRISLRRINPLSPSAHTSA 999
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
KI LL L + +G+KS++FSQ+T+FLDL+ L++ I F+RLDGT+ Q+ R +VL
Sbjct: 1000 KIHALLAHLVRVP-AGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLA 1058
Query: 786 QFSE 789
QF++
Sbjct: 1059 QFTK 1062
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 227/519 (43%), Gaps = 90/519 (17%)
Query: 15 SVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEIKPLAARRKLIISKENEIRA 74
S+VG + S + + +++ AIN+ FD ++K P +++ L+ + N R
Sbjct: 104 SIVGEQVSPETLSQIRKLSDGSLEKAINVYFDG-SWKNAG-SPGSSQTTLLSCERNASRP 161
Query: 75 S------------SENG--TLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKL-RRGDE 119
S +ENG ++ E I+ + + + +G V A +T G L + GD
Sbjct: 162 SPLHTSREQGTGPAENGADSVTEPISRSKLQPARRYLGAFG-VEAWATRSGIGLIKHGD- 219
Query: 120 VTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPL 179
T LS++ + ++ V + RF+ EIGR+P E + + L
Sbjct: 220 -TVNIERARSQPLSTRGRTGKLRVNQKGDV----LTRFTNTAGQEIGRLPRETAEWVSTL 274
Query: 180 VRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFR---------KHHATSLKAGSN 230
+ K E G C AP+ L + DTI L +R ++ F+ + AT++
Sbjct: 275 LDQKICEFRGVCVFAPDRLRVNDTIYLQLRCFMRIEAFQPKELPQKQDDNRATTIFEQEE 334
Query: 231 SAEDSVSLCH--PLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANK 288
SAE+ L LF +G+ T D ++R K+G A +
Sbjct: 335 SAEEKQLRLRQVALVQLFDEIGL-----KSTTQDDEIKKQR----KEGLLRAAEMADQEA 385
Query: 289 SKVQSAKVNDVDDVEP--ISDSDVDNIV--GVGYSSEIEEMEPPSTLKCELRPYQKQALH 344
K+ + D D EP + +D + + + E +PPS+ +LR YQKQAL+
Sbjct: 386 KKLAKSGNTDSGDEEPAELEQDQLDALYKKAQSFDFSMPEAQPPSSFAMDLRKYQKQALY 445
Query: 345 WMVQLEKGRCLDEAATTLHPCWEAY----RLLDERELVV-------YLNAFSGEATIEFP 393
WM+ EK + + +HP WE Y + +D+++L + Y+N +SGE +++FP
Sbjct: 446 WMLSKEKDKKSGREVS-IHPLWEEYDWPLKDVDDKDLPIIEGINHFYVNPYSGELSLDFP 504
Query: 394 STLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSP 453
+ Q GGILAD MGLGKT+ ++L+ HS R L QS
Sbjct: 505 AQEQHCLGGILADEMGLGKTIEMLSLV--HSHR-NLPPTQSLG----------------- 544
Query: 454 NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
NL + L + ++ T TL++ PM+LL QW
Sbjct: 545 NLTR-----LPVSGVVPAPYT-----TLVVAPMSLLAQW 573
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 182/361 (50%), Gaps = 57/361 (15%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + + P+ D + L +VQ IL+ +LRR K+ D++GR I+ LPP
Sbjct: 734 LRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPK 793
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+++ + + AE+ Y+ L +R+K +F + GR + NY SIL +L++LRQC DHP L
Sbjct: 794 TVEIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLL 853
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS---------------RAYVQEVV 645
V+ + + +L ++ L+ + EG +D+ + +AY +V+
Sbjct: 854 VLGKS-----GEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVL 908
Query: 646 EELQKGEQGECPICL----EAFEDAVLTPCAHRLCRECL---LGSWKTPTS-GLCPVCRK 697
+EL GEQ + PIC E F D VL PC HR C++C+ +G+ + CP C K
Sbjct: 909 KEL--GEQEDTPICELCSNEMF-DEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGK 965
Query: 698 ---------TISRQDLITAPTGSRFQVDIEKN---------------WVESTKIAVLLKE 733
++ R+ P + + N V STK+ LL++
Sbjct: 966 GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKVDLVTSTKLRALLRQ 1025
Query: 734 LENLCLSG--SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN 791
LE + +K+++FSQ+T+FLDL++ L++ I +LR DGT++Q QR +++F
Sbjct: 1026 LEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKT 1085
Query: 792 N 792
N
Sbjct: 1086 N 1086
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 190/420 (45%), Gaps = 77/420 (18%)
Query: 144 ARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDT 203
A++ +I+RF + EIGR+ + L L+ +++ G P+ L T
Sbjct: 217 AKKVKATTDQIIRFRNERGFEIGRLSIHEAGFLTHLLDTGVIQLSGNVIDCPQNLTTGCT 276
Query: 204 IVLSIRVYINSSMF-------RKHHATSLKAGSNSA-EDSVSLCH-PLPNLFRLLGITPF 254
I+L+I+VY+ F R+ H + K +A E+++ L L +LF +G+ P
Sbjct: 277 ILLNIKVYLARKAFENFGKHKREEHFSFWKDQRETAMEEAMRLRKDSLRSLFERIGVKPI 336
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKS------------------------- 289
+ + S + + L+ + G L S L ++ S
Sbjct: 337 QSSAL--SKVTPIQGVLNRQKGPDLEGSRLRSSPSTSTAEEKGKGRAAMRAVDDDEEDSG 394
Query: 290 ----KVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
K+ ++N++D + + + ++EM+PPST LRPYQKQAL W
Sbjct: 395 DEAEKLDEKQMNEIDSIYRKAQQG---------DTRLDEMDPPSTFLYTLRPYQKQALTW 445
Query: 346 MVQLEKGRCLDEAATTLHPCWEAY------------RLLDERE-----LVVYLNAFSGEA 388
M EKG +LHP WE Y + D+ E Y N +SGE
Sbjct: 446 MNAREKGDS-SVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRKFYWNPYSGEL 504
Query: 389 TIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDI 448
+++FP++ ++RGGILADAMG+GKT M +L+ T+ + ++S ++ G+EG
Sbjct: 505 SLKFPTSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTR---DGVEGE-- 559
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQTNTL-----INGGTLIICPMTLLGQWNKLIQKPYEEG 503
D+ P + + K +++ + T TL++CP++L QW+ ++K ++G
Sbjct: 560 IDEEPASKRIKFKQVTLSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQG 619
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 181/361 (50%), Gaps = 57/361 (15%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + + P+ D + L +VQ IL+ +LRR K+ D++GR I+ LPP
Sbjct: 734 LRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPK 793
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+++ + + AE+ Y+ L +R+K +F GR + NY SIL +L++LRQC DHP L
Sbjct: 794 TVEIKVLQFSRAERQIYKFLEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQCVDHPLL 853
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS---------------RAYVQEVV 645
V+ + + +L ++ L+ + EG +D+ + +AY +V+
Sbjct: 854 VLGKS-----GEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKVL 908
Query: 646 EELQKGEQGECPICL----EAFEDAVLTPCAHRLCRECL---LGSWKTPTS-GLCPVCRK 697
+EL GEQ + PIC E F D VL PC HR C++C+ +G+ + CP C K
Sbjct: 909 KEL--GEQEDTPICELCSNEMF-DEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGK 965
Query: 698 ---------TISRQDLITAPTGSRFQVDIEKN---------------WVESTKIAVLLKE 733
++ R+ P + + N V STK+ LL++
Sbjct: 966 GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNLKSSNDTTVTLGKVDLVTSTKLRALLRQ 1025
Query: 734 LENLCLSG--SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN 791
LE + +K+++FSQ+T+FLDL++ L++ I +LR DGT++Q QR +++F
Sbjct: 1026 LEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKT 1085
Query: 792 N 792
N
Sbjct: 1086 N 1086
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 192/411 (46%), Gaps = 59/411 (14%)
Query: 144 ARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDT 203
A++ +I+RF + EIGR+ + L L+ +++ G P+ L T
Sbjct: 217 AKKVKATTDQIIRFRNERGFEIGRLSIHEAGFLAHLLDTGVIQLSGNVIDCPQNLTTGCT 276
Query: 204 IVLSIRVYINSSMF-------RKHHATSLKAGSNSA-EDSVSLCH-PLPNLFRLLGITPF 254
I+L+I+VY+ F R+ H + K +A E+++ L L +LF +G+ P
Sbjct: 277 ILLNIKVYLARKAFENFGKHKREEHFSFWKDQRETAMEEAMRLRKDSLRSLFERIGVKPI 336
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKS---------------KVQSAKVNDV 299
+ + S + + L+ + G L S L ++ S V +
Sbjct: 337 QSSAL--SKVTPIQGVLNRQKGPDLEGSRLRSSPSTSTAEEKGKGRAAMPAVDDDGEDSG 394
Query: 300 DDVEPISDSDVDNIVGVGYSSE-----IEEMEPPSTLKCELRPYQKQALHWMVQLEKGRC 354
D+ E + + ++ I + ++ ++EM+PPST LRPYQKQAL WM EKG
Sbjct: 395 DEAEKLDEKQMNEIDSIYRKAQQGDTRLDEMDPPSTFLYTLRPYQKQALTWMNAREKGDS 454
Query: 355 LDEAATTLHPCWEAY------------RLLDERE-----LVVYLNAFSGEATIEFPSTLQ 397
+LHP WE Y + D+ E Y N +SGE +++FP++
Sbjct: 455 -SVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRKFYWNPYSGELSLKFPTSQN 513
Query: 398 MARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMK 457
++RGGILADAMG+GKT M +L+ T+ + ++S ++ G+EG D+ P +
Sbjct: 514 LSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTR---DGVEGE--IDEEPASKR 568
Query: 458 KEPKSLSIDKLIKQTNTL-----INGGTLIICPMTLLGQWNKLIQKPYEEG 503
+ K +++ + T TL++CP++L QW+ ++K ++G
Sbjct: 569 IKFKQVTLSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQG 619
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 30/305 (9%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 614 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 672
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H +L+ +
Sbjct: 673 EERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN-------- 724
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSR-AYVQEVVEELQKGEQGECPICLEAFEDAVLTP 670
SSN G D R ++++ L G EC ICL++ V+T
Sbjct: 725 ----------AVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITH 774
Query: 671 CAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAP-----TGSRFQVDIEKNWVES 724
CAH C+ C+ + CP+CR I +L+ P S + D+E W S
Sbjct: 775 CAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDME--WTSS 832
Query: 725 TKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782
+KI L+ L +L KS++ SQ+T FL L++IPL + F RLDG++ Q++R +
Sbjct: 833 SKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVE 892
Query: 783 VLKQF 787
++ F
Sbjct: 893 SIQCF 897
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN 382
EMEP ++ L P+QKQAL WMV E + L P WE L Y N
Sbjct: 228 HEMEPAEAIETPLLPHQKQALAWMVSRENSK-------ELPPFWEQRNDL-------YYN 273
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
+ + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 274 TITNFSEKDRPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 176/382 (46%), Gaps = 38/382 (9%)
Query: 450 DQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIIC---------------PMTLLGQWNK 494
D+ N+ +E K+ I N + GT I+ P W
Sbjct: 656 DEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQT 715
Query: 495 LIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+ PY+ D + L +VQSIL+ ++LRRTK + DR G I+ LPP +++ Y + +++E
Sbjct: 716 FVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSE 775
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCDHPFLVMSRGDTQDYSD 612
+ Y++L+ ++K + + G + NY +IL LLLRLRQ CCD L +++ + D
Sbjct: 776 RKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSETFDD 835
Query: 613 LNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL-EAFEDAVLTPC 671
++F N K +PS + ++ + ECPIC E ++ +L C
Sbjct: 836 FEFSVEQF-NSLINQFVVTGKPIPSDILKIDTLKSFE-ALITECPICCNEPIQNPLLLNC 893
Query: 672 AHRLCRECL-----LGSWKTPTSGLCPVCRKTISRQDLI------TAPTGSRFQVDIEKN 720
H C +CL + LC CR+ + QD+ T S V E
Sbjct: 894 KHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVK 953
Query: 721 W-----VESTKIAVLLKELENLCLSG--SKSILFSQWTAFLDLLQIPLSRNNIPFLRLDG 773
W ++S K+ LL +L L S K ++FSQ+T FLD++ L + + R DG
Sbjct: 954 WKYWNRLQSVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDG 1013
Query: 774 TLNQQQREKVLKQFSEDNNIMV 795
T++QQ R L+ F D ++ V
Sbjct: 1014 TMSQQMRSTALETFRNDPDVNV 1035
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 175/421 (41%), Gaps = 64/421 (15%)
Query: 97 FVGWGDVPAMSTSKG-RKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIV 155
++G V A ST+ G R L+ G+ + S S S KS + + + S IV
Sbjct: 205 YIGCFGVEAYSTASGTRTLQAGERIYLERQKLSIKSQSRNSRKKSKLLSINSSC-YSNIV 263
Query: 156 RFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSS 215
RF D EIG++P E + + L+ C + ++ + L + +IN +
Sbjct: 264 RFCNSDHHEIGKLPTEVASVISTLMEQGFWSFEAICIYSDNIIRFGSNVTLQVYCFINVN 323
Query: 216 MFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKD 275
+ + A ++ E+ L R + F P DL ++K+
Sbjct: 324 HPSLNRSPFTLATNSMQEEEEHLKASFAQNKRDHLLRLFTWIALEP-DL----EDCNTKE 378
Query: 276 GCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV----GVGYS------SEIEEM 325
+ L S + A+ D+ P S D +++V + Y +E+
Sbjct: 379 SIHIDDIL---KTSSLPEARDESNSDLTPSSTEDEEDVVSDQLAILYDKVKTSGAELPSA 435
Query: 326 EPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDEREL-------- 377
PST +LR YQKQAL+WM E+G D +A LHP W +R + E
Sbjct: 436 PKPSTFALDLREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEFPEFFKCSS 495
Query: 378 -----VVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGI 432
Y+N ++GE T+ FP+++ RGGILAD MGLGKT+ ++L+ HS R S
Sbjct: 496 DDDNTHFYVNLYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI--HS-RPCFS-- 550
Query: 433 QSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
+D+ P + SL + + TL++ PM+LL QW
Sbjct: 551 ----------------TDEIPEAFRHSKPSLPV----------ASRTTLVVAPMSLLDQW 584
Query: 493 N 493
+
Sbjct: 585 H 585
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 26/303 (8%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L+E
Sbjct: 608 WYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSE 666
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L+
Sbjct: 667 EERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT--------- 717
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
N ++ SS + + + ++++ L G EC ICL++ V+T C
Sbjct: 718 --NGMS------SSGPSRSDTPEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHC 769
Query: 672 AHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAPTGSRFQVDIEK----NWVESTK 726
AH C+ C+ + CP+CR I +L+ P D +K W S+K
Sbjct: 770 AHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPP-EELACDSDKESSMEWKSSSK 828
Query: 727 IAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVL 784
I L+ L L KS++ SQ+T FL L++ PL + F RLDG++ Q++R + +
Sbjct: 829 INALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESI 888
Query: 785 KQF 787
++F
Sbjct: 889 QRF 891
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNA 383
EMEP ++ L P+QKQAL WM+ E + L P WE L Y N
Sbjct: 229 EMEPAEAIETPLLPHQKQALAWMIARENSK-------ELPPFWEQRNDL-------YYNT 274
Query: 384 FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
+ + E P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 275 ITNFSVKERPENVH---GGILADDMGLGKTLTAIAVILTNFDDG 315
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 32/310 (10%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P ++ W LIQ+P +G+++GL +Q ++ I LRRTK + ++ LPP ++
Sbjct: 487 PFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKS------LIGLPPKTVET 540
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
Y EL+ E+ Y+ + +K + G ++ NY+++L ++LRLRQ CD
Sbjct: 541 CYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCD-------- 592
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGED-KDVPSRAYVQEVVEELQKGEQGECPICLEAF 663
D S L L+ + + ED D P +Q++V LQ GE +CPIC+
Sbjct: 593 ----DMS----LCPPELRSFTTSTSVEDVTDKPE--LLQKLVAALQDGEDFDCPICISPP 642
Query: 664 EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVE 723
+ ++T CAH CR C+L + + + LCP+CR ++++ DL AP + + +
Sbjct: 643 TNIIITRCAHIFCRACILQTLQR-SKPLCPLCRGSLTQSDLYNAPPPPPDSSNTDGEDAK 701
Query: 724 STKIAVLLKELENLCLS------GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQ 777
S+ + + L +L ++ +KS++FSQ+ L LL+ PL LRLDG +
Sbjct: 702 SSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTV 761
Query: 778 QQREKVLKQF 787
++R +V+ +F
Sbjct: 762 KKRTQVIGEF 771
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 326 EPP-STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAF 384
EPP +K EL +QK+ L W++ EK + L P WE E++ +LN
Sbjct: 221 EPPREVIKSELFAHQKEGLGWLLHREK-------SGELPPFWE------EKD-GEFLNTL 266
Query: 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIE 444
+ + + P L RGG+ AD MGLGKT +T+ L+ + G S +P DG E
Sbjct: 267 TNYRSDKRPDPL---RGGVFADDMGLGKT-LTLLSLIAFDRYGNASTSTPTEEPLDG--E 320
Query: 445 GYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGG-----TLIICPMTLLGQW 492
G D ++ + S S+ + +T+ ++ TLI+CP +++ W
Sbjct: 321 G-DKIEKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAW 372
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 156/304 (51%), Gaps = 28/304 (9%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 611 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERPVFIQHITLSD 669
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L+ +
Sbjct: 670 EERKIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN-------- 721
Query: 612 DLNKLAKRFLKGSSNALEGEDK-DVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTP 670
SS+ G D + + ++++ L G EC ICL++ V+T
Sbjct: 722 ----------TVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITH 771
Query: 671 CAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAPTGSRFQVDIEKN----WVEST 725
CAH C+ C+ + CP+CR I +L+ P D EK W S+
Sbjct: 772 CAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLLECPP-EELACDSEKKSNMEWTSSS 830
Query: 726 KIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
KI L+ L +L KS++ SQ+T FL L++ PL + F RLDG++ Q++R +
Sbjct: 831 KINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVES 890
Query: 784 LKQF 787
++ F
Sbjct: 891 IQCF 894
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVY 380
+ +EMEP ++ L P+QKQAL WMV E R L P WE L Y
Sbjct: 226 KTQEMEPAEAVETPLLPHQKQALAWMVSRENSR-------ELPPFWELRNDL-------Y 271
Query: 381 LNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
N + + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 272 YNTITNFSEKDQPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 168/354 (47%), Gaps = 45/354 (12%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E + R L +VQ++L+P+++RRTK +G+ ++ LPP
Sbjct: 775 LRVEPWNNFSFWRTFITVPFESKNFVRALDVVQTVLEPLVMRRTKDMKTPDGQFLVPLPP 834
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++++ EL+E E+ Y+ +F R+K ++ G ++ + SI +LRLRQ C HP
Sbjct: 835 KHIEIVDIELSEPERAVYDYVFNRAKRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPV 894
Query: 600 LVMSR----------------GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
LV ++ D DL L +RF + +A + + +
Sbjct: 895 LVRNQEILADEEEANMAADVAAGLADDMDLQTLIERFTATTDDASKTNNN------FGAH 948
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTPTS----GLCPVCRKT 698
V+ +++ ECPIC E D +T C H C++CLL K T C CR+
Sbjct: 949 VLRQIRDEAVNECPICAEEPMIDQAVTGCWHSACKKCLLDYIKHQTDRNEVPRCFQCREH 1008
Query: 699 ISRQDLI-----------TAPTGSRFQVDIEKNWV----ESTKIAVLLKELENLCLSGS- 742
I+ +D+ ++ G+ + I V S KI L+ L L
Sbjct: 1009 INIRDIFEVIRHDDDLETSSTPGASPEPRISLQRVGANDSSAKIVALISHLRTLRQEHPK 1068
Query: 743 -KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
KS++ SQ+T+FL L+ L+R+ I FLRLDG+++Q+ R VL +F N V
Sbjct: 1069 MKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCV 1122
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 58/381 (15%)
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
IVRF+ E+GR+ + + + L+ G C APE L +T+ L ++ Y+
Sbjct: 306 IVRFNDASGRELGRLAKDTANWVSTLIDQNICRFEGICVYAPERLRTNETVFLQLKCYML 365
Query: 214 SSMFRKHH---ATSLKAGSNSAEDSVSLCH------PLPNLFRLLGITPFK--------- 255
S F A + AG + +++ L LF+ + I P +
Sbjct: 366 RSAFLGRTLQLADNRAAGFHEKDETTEEKDLRLRQVALVRLFQEINIVPSRGNAAAAKDA 425
Query: 256 KAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVG 315
+ + + K+ +D + + L + + + + + D ++ +
Sbjct: 426 RKDLLEAADSAEKKAMDKAKAGDHNTNGLASPPEEAEEGQELEQDQLDALYKK------A 479
Query: 316 VGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY----RL 371
+ E EP +T LRPYQKQ+L+WM+ EK + ++ T++HP WE Y +
Sbjct: 480 QSFDFSTPEAEPANTFAMTLRPYQKQSLYWMLAKEKNQRTEDRETSMHPLWEEYVWPTKD 539
Query: 372 LDERELVV-------YLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHS 424
D+++L V Y+N +SG+ +++FP Q GGILAD MGLGKT+ ++L+ HS
Sbjct: 540 HDDKDLPVVPDQPCFYVNPYSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLI--HS 597
Query: 425 QRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLING--GTLI 482
R S+ I+ + S N + + P + T I+ TL+
Sbjct: 598 HR------------SEVAIKAREAGPTSVNNLPRLPT-------VSGQKTTIDAPCTTLV 638
Query: 483 ICPMTLLGQWNKLIQKPYEEG 503
+ PM+LL QW + +EG
Sbjct: 639 VAPMSLLAQWQSEAENASKEG 659
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 172/386 (44%), Gaps = 90/386 (23%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
+N + KP++ + L +VQ IL+ ++LRR K D++G+PI+ LPP + V E +E
Sbjct: 888 FNSFVCKPFQAKSTKALDVVQVILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSE 947
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM-------SR 604
E+ Y+ +++R+ ++F G + N + I +L+RLRQ HP LV+ S
Sbjct: 948 LERRIYDNVYRRAYLQFASLKANGTVTRNLSVIFSVLMRLRQAVCHPSLVLKAGSKVQSG 1007
Query: 605 GDTQDYSDLNKLA----KRFLKGSSNALE-GEDKD------VPSRAYVQEVVEELQKGEQ 653
G +D+ D N ++ ++A+E G D D PS ++E+V + Q E
Sbjct: 1008 GIRKDHVDRNGEVGVGEGDHVEVDADAVEFGLDSDHVGGNGTPSTQDLRELVAQFQLDEA 1067
Query: 654 G--------------------------------------ECPICLE--AFEDAVLTPCAH 673
G ECPICLE L C H
Sbjct: 1068 GEAGDDSTESYTKATVERLIGEMHGDQATVPPVVSDGENECPICLEESQISPCYLPRCMH 1127
Query: 674 RLCRECL---LGSWKTP-TSGLCPVCRK-TISRQDLIT---------APTGSRFQVD--- 716
C+ CL LG K G CP CRK + DLI A +G D
Sbjct: 1128 SACKACLVDYLGQCKQKGDQGACPTCRKGPVQETDLIEAIRTRPATRAASGGASPTDRPG 1187
Query: 717 -------------IEKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPL 761
+ N STK++ L+ L L + + K ++FSQ+T+FLDL++ L
Sbjct: 1188 KACTLTSVPSVIYVRNNLRTSTKLSALISHLNTLRATEAAFKGVIFSQFTSFLDLIEPVL 1247
Query: 762 SRNNIPFLRLDGTLNQQQREKVLKQF 787
+R FLRLDG+ Q+ R+K++ +F
Sbjct: 1248 TRYRFHFLRLDGSTPQKVRDKLVLEF 1273
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 51/217 (23%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRC-----------------LDEAATTL 362
+ + E+EPP + LRPYQKQAL WM +E E +L
Sbjct: 542 AHLPEVEPPESFVLTLRPYQKQALGWMKNMEMAPGQSSSSQEQSVTQQGNGDTGERNVSL 601
Query: 363 HPCWEAY-------------RLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
HP WE Y RL+ + Y N ++G+ +++F + +RGGILAD MG
Sbjct: 602 HPLWEEYEFPLDYDNPQANERLILSATRLFYFNPYTGDLSLDFQRASKGSRGGILADEMG 661
Query: 410 LGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK--------EPK 461
LGKT+M +LL H+ R G + S+G I D ++ + +K
Sbjct: 662 LGKTIMVASLL--HANRTSDPG-----EESEGEINAVDAAEGDVSTKRKGSAKQTSLASA 714
Query: 462 SLSIDKLIKQTNTLING------GTLIICPMTLLGQW 492
+ + Q L+ +L++ PM+L+GQW
Sbjct: 715 FAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQW 751
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 133 SSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCK 192
+S P+ F +++ IVRFS E+GR+P E + + L+ E G
Sbjct: 290 ASAGPTNFFTSKQKSKEKEHFIVRFSNMRGFEVGRLPLEVAIWMSKLIDAGIAEFEGVVV 349
Query: 193 SAPEVLGIMDTIVLSIRVYINSSMF 217
P L + I+L ++ YI F
Sbjct: 350 DCPPSLTVGCDIILQVKAYIKFDAF 374
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 155/308 (50%), Gaps = 14/308 (4%)
Query: 492 WNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELT 550
W I P++EG L VQ IL+PI+LRRTK+ +G P++VLP + + LT
Sbjct: 615 WRNFITLPFQEGKIVSALMTVQCILEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALT 674
Query: 551 EAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
+ E+ Y + R++ + + NY +IL +LRLRQ C P L++ R + +
Sbjct: 675 DQERVIYSYVLARAQTSLQKSEASEAVGRNYLNILTQILRLRQSCCDPALIL-RPEAEVP 733
Query: 611 SDLNKLAKRFLKGSSNALEGEDKDVPSRA--YVQEVVEELQ-KGEQGECPICLEAFEDAV 667
+D + + ++ + D + A Y E++ +LQ + ECPIC E
Sbjct: 734 TDEQLQIEENESQLKSMIQQYNDDTQTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLA 793
Query: 668 LTPCAHRLCRECLLGSWKTPTSG----LCPVCRKTISRQDLITAPTGSRFQVDIE----K 719
++ C H C +CL + + S +C +CR+ + +D+ DI
Sbjct: 794 ISKCLHMGCVDCLADNVRFQESKKQTPVCCICRQPAALKDIFEVERTGEDCKDIRLKKLS 853
Query: 720 NWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQ 779
+ S+K+ L+ +L+ L +KS++FSQ+T++LD++Q L R I R DGTL++QQ
Sbjct: 854 DRPRSSKLVALVSKLKQLP-KDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQ 912
Query: 780 REKVLKQF 787
R VLK F
Sbjct: 913 RTDVLKAF 920
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 24/279 (8%)
Query: 162 AGEI-GRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKH 220
+GE+ GRI E + L+ + + C A L + V+ ++ Y+ F+
Sbjct: 194 SGELLGRISGEHDYSIASLIDSRVCDFEASCVYADHNLSLGSNFVVELKCYLTEEAFQDV 253
Query: 221 HATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPL-DSKDGCGL 279
L + + + V ++ ++L + + DL+ + + +++ +
Sbjct: 254 AMPLLDSKTAKKREYVFDNSRESHVEKML-----RNRQIAIVDLFGKLNLIKENEANADM 308
Query: 280 HASLLHANKSKVQSAKV--NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPST----LKC 333
+L A S N D+ EPI ++D + E E++E P T
Sbjct: 309 VKDMLRAKSQPPSSQPPSQNSEDESEPIPTDELDALYK---RIEKEDVEQPETEVEGFPL 365
Query: 334 ELRPYQKQALHWMV--QLEKGRCLD-EAATTLHPCWEAYRL--LDERELVVYLNAFSGEA 388
ELR YQKQ L WM+ + E D + + ++P W DE+ Y+N SG
Sbjct: 366 ELRRYQKQGLTWMISRETEVSEYFDNDDSGPINPLWTKVDFPGSDEK---FYVNFSSGAL 422
Query: 389 TIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
T++FP + GGILAD MGLGKT+ T+A++ G
Sbjct: 423 TLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRHVG 461
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 173/341 (50%), Gaps = 40/341 (11%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + + W + + P+E+G+ + ++ ++L+P++LRRTK+ D +G+P++ LPP ++
Sbjct: 677 PWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVI 736
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
V +L+ +EK Y+++ + ++ + + +G +L NY +IL +LRLRQ C H L+
Sbjct: 737 VEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
Query: 604 RGD------------TQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAY--VQEVVEELQ 649
D TQ+ S + L + +K +++ + D S + + E+L
Sbjct: 797 TPDLGDPDLEDLENSTQNISSI--LMPKNIKSPKSSISQDKLDALSANFRDIHSASEQLP 854
Query: 650 KGEQGECPI-CLEAFEDAVLTPCAHRLCRECLLG----SWKTPTSGLCPVCRKTISRQDL 704
E C C+E +T C H C CL S CP CR IS ++
Sbjct: 855 SFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANV 914
Query: 705 ITAPTGSRFQVDIEKNW--------VESTKIAVLLKELENLCLS--GSKSILFSQWTAFL 754
+ + +D E+ + +STKI LL+ L+ + + G + I+FSQ+++FL
Sbjct: 915 LKL----KEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFL 970
Query: 755 DLLQIPLS----RNNIPFLRLDGTLNQQQREKVLKQFSEDN 791
D+L+I L R+ + + DG L+ ++R ++L+QF + +
Sbjct: 971 DILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHDKD 1011
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 160/386 (41%), Gaps = 66/386 (17%)
Query: 151 CSEIVRF-STKDAGEIGRIPHEWSRCLLPLVRDKKVEILG--CCKSAPEVLGIMDTIVLS 207
CS +VR T E+GR+P + +R L PL+ + L + + + D I +
Sbjct: 223 CSHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIR 282
Query: 208 IRVYINSSMFRKHHATSLKAGS---NSAEDSVSL--CHPLPNLFRLLGITPF---KKAEF 259
I Y+ S F + S+ S + D+ L + LF + I P K E
Sbjct: 283 IDCYLTSQAFVRIEGGSILNKSFINDHGMDTRQLHRAGAIMALFDAINIQPVYGDTKNEM 342
Query: 260 TPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYS 319
P+ + + +++ + ++ +N + I+ S
Sbjct: 343 IPN----------------YQENTVSSSQFQDEALNINQLKSFYRITQS-------AASL 379
Query: 320 SEIEEMEPPSTL-KCELRPYQKQALHWMV--QLEKGRCLDEAA------TTLHPCWEAYR 370
+ E P +L K +LR YQKQ+L WM+ + E ++AA +++P W+ +R
Sbjct: 380 QNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFR 439
Query: 371 LLD---------ERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLL 421
E + Y N ++GE +IE P + GGILAD MGLGKT+ +AL+
Sbjct: 440 WPSNSKQGTPNHEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALIC 499
Query: 422 THS-QRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGT 480
T S I+S +PS + D SP L + K +T T
Sbjct: 500 TASYDEAHEKKIESTKKPSMKEMSSQ--VDSSP-LRHSQHKH----------DTYAYRTT 546
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDER 506
LI+ PM+LL QW +K ++ +R
Sbjct: 547 LIVVPMSLLNQWQSEFEKANKDLKKR 572
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 39/339 (11%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P W + P+E+ + L +V+SIL+PI LRRTKS + G+P++ LP ++
Sbjct: 644 PWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQK-KNGKPLVELPAKEVV 702
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ + + E+ Y+ R+ F + ++ G++L Y IL +LRLRQ C H L+
Sbjct: 703 IEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGG 762
Query: 604 RGDTQD---YSDLNKLAKRFLKG-SSNALE-GEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ D ++ ++ ++FL N + D DV + Y + +++ E+ EC I
Sbjct: 763 AHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMY--NLYGKIK--EENECSI 818
Query: 659 CLEA---FEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTISRQDLI---TAP 708
C + + + V+TPCAH C C+L + LCP CR IS+ L P
Sbjct: 819 CTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPISKYQLFRIRNQP 878
Query: 709 T-GSRFQVDIEKNWVE-------------STKIAVLLKELENLCLS--GSKSILFSQWTA 752
T G+ + +K+ + S+KI L++ L+ L SK I+FSQ+++
Sbjct: 879 TKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSS 938
Query: 753 FLDLLQ--IPLSRNNIPFLRLDGTLNQQQREKVLKQFSE 789
+LD++Q + L+ + DG LN R K+L+ F++
Sbjct: 939 YLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQ 977
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 154/408 (37%), Gaps = 116/408 (28%)
Query: 142 VRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEIL--GCCKSAPEVLG 199
+ + + + S IVR + EIGRIP +W+R L PL D + + + L
Sbjct: 175 ITTKNSTMANSAIVRV-YHNEREIGRIPEDWTRILSPLF-DLNIAVFEASVLEETKSRLS 232
Query: 200 IMDTIVLSIRVYINSSMFRKH-----HATSLKAG----SNSAEDSVSL---CHPLPNLFR 247
D+ V+ I VY+ +S F K+ + LK S +E +L + NLF
Sbjct: 233 TGDSFVIEIEVYLTNSSFAKNLDATENPIDLKKSNFDYSKESESEAALRLRQFAISNLFD 292
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISD 307
L I P K + D++D + + S ++N D P+ +
Sbjct: 293 RLAIKPLKVND-------------DTED------------EEDISSQEINSGDVEHPVPE 327
Query: 308 SDVDNIVGVGYSSEI--------EEMEPPS-TLKCELRPYQKQALHWMVQLEK------- 351
++D + S+ E PP +LR YQK L WM+ EK
Sbjct: 328 INLDQMKEFYQSNNQLKILEGLPETTTPPKENFALDLRSYQKHGLSWMLAREKELDVLEM 387
Query: 352 ----------GRCLDEAATTLHPCWEAYR-----------LLDERELVVYLNAFSGEATI 390
R E T++P W Y+ ++ E Y N ++GE ++
Sbjct: 388 LSNEDKLSSQSRKELENLGTMNPLWRKYKWPYATEATQDPTQNQTEKYFYANMYNGELSL 447
Query: 391 EFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISD 450
E P RGGILAD MGLGKT+ T+AL+ S P D
Sbjct: 448 EKPVIKSSLRGGILADEMGLGKTIATLALV--------------NSVPYDNF-------- 485
Query: 451 QSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
EPKS + TLI+ PM+LL QW +K
Sbjct: 486 -------PEPKS---------DRPYASQTTLIVVPMSLLFQWKSEFEK 517
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 35/339 (10%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P + +G W + I P+EE + ++ +V +I++P++LRRTK D +G P++ LPP
Sbjct: 708 LKLEPWSQIGYWKQFITNPFEERNFKQAFDVVNAIMEPVLLRRTKQMKDTDGNPLVQLPP 767
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCDHP 598
++ + +L++ +K YE +R++ F ++ G +L Y++IL +LRLRQ CCD
Sbjct: 768 KEIVIEKLQLSKKQKLIYEEFLQRAEKTFRSGLQSGDLLKKYSTILVHILRLRQVCCDSN 827
Query: 599 FL-VMSRGDTQDYSDLNKLAKRF--LKGSSNALEGEDKDVPS------RAYVQEVVEELQ 649
+ + D S NKL +K E E+ +VP ++ V +
Sbjct: 828 LIGTLDENDEDLSSGNNKLITESVDVKTLIPDTEEEEDEVPPFENDELDKLIESVEAKFI 887
Query: 650 KGEQ---GECPICL-EAFE--DAVLTPCAHRLCRECL--LGSWKTPTS--GLCPVCRKTI 699
Q EC IC E E AV+T C H C+ECL G+++ S CP CR+ I
Sbjct: 888 DSNQLIPVECSICTAEPIESSSAVVTECEHVFCKECLEEYGNFQKEKSLQQKCPNCRRDI 947
Query: 700 SRQDLITAPTGSR-----FQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWTA 752
+ + GS D ++ K+ L++ L+ L +G + ++FSQ+++
Sbjct: 948 NLNRCLAFEKGSDGILKLIHFDRKE---RPAKLNALIRHLQQLQDSSAGEQVVVFSQFSS 1004
Query: 753 FLDLLQIPL----SRNNIPFLRLDGTLNQQQREKVLKQF 787
+LD+L+ L S N + + DG L+ ++R VL+ F
Sbjct: 1005 YLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDF 1043
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 158/399 (39%), Gaps = 102/399 (25%)
Query: 157 FSTKDAGEIGRIPHEWSRCLLPLVRDKKVEI-LGCCKSAPEVLGIMDTIVLSIRVYINSS 215
+S D EIGR+P + +R + PL+ +V L + L I D I++ + ++ S+
Sbjct: 222 YSANDEREIGRVPEDIARIVFPLLHRNEVHFKLTMIYPGDKRLSIGDNIIIQMDSFLTST 281
Query: 216 MF-RKHHATSLKAGSNSAEDSVSLCHPLPNL----FRLLGITPFKKAEFTPSDLYTRKRP 270
+F RK + T N E ++ L R+ I F K + P
Sbjct: 282 LFNRKENPTFSTQNGNGRERFGAIVETEQELEERNIRMGLIMLFDKIKLRPV-------- 333
Query: 271 LDSKDGCGLHASLLHANKSKVQSAKVNDVDD---------VEPISDS-------DVDNIV 314
KD A L K ++ D++D EP++D D NI
Sbjct: 334 ---KD----EAKFLEKLKQDGDDNEIVDLEDDESFGNFLSQEPLNDELPTQHQEDTMNIN 386
Query: 315 GVG-----------YSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCL-------- 355
+ +S I PP +K ELR YQKQ L WM++ E G +
Sbjct: 387 QLTSFYKATQSSKQLNSLIPTTPPPELVKVELRKYQKQGLTWMLRRE-GISIGHDNEDKS 445
Query: 356 DEAATTLHPCWEAYRL-----------------LDERELVVYLNAFSGEATIEFPSTLQM 398
++ T L+P W ++ + + + Y N +GE ++E P+
Sbjct: 446 EDDTTLLNPLWRQFQWPRNMSWHNQSTGSENDNSNPKLIFFYGNLHTGEFSLERPTMNSF 505
Query: 399 ARGGILADAMGLGKTVMTIALLLT-----HSQRGGLSGIQSASQPSDGGIEGYDISDQSP 453
GGIL+D MGLGKT+ ++L+L H+ L +S++ SD IE
Sbjct: 506 KNGGILSDEMGLGKTISALSLVLMRPKDEHTTSQSLFHQESSNLSSDDVIE--------- 556
Query: 454 NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
KEP+ + TLII PM+LL QW
Sbjct: 557 ---IKEPE-----------RSYAYKTTLIIVPMSLLTQW 581
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 166/341 (48%), Gaps = 45/341 (13%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + P+E + ++ +V +IL+P++LRRTK D++G+P++ LPP ++
Sbjct: 731 PWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVV 790
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ ++++ Y+ L +++V + +G +L Y++IL +LRLRQ C HP L+ S
Sbjct: 791 IKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGS 850
Query: 604 RGDT-QDYSDLNKL---------------AKRFLKGSSNALEGEDKDVPSRAYVQEV--- 644
+ + +D S NKL ++RF N+ E+ D A +Q +
Sbjct: 851 QDENDEDLSKNNKLVTEQTVELDSLMRVVSERF----DNSFSKEELD----AMIQRLKVK 902
Query: 645 VEELQKGEQGECPICLEA---FEDAVLTPCAHRLCRECLLGSWKTPTS---GL-CPVCRK 697
+ + + EC IC + A+ T C H C +CL + S GL CP CR
Sbjct: 903 YPDNKSFQSLECSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRN 962
Query: 698 TISRQDLI----TAPTGSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWT 751
I L+ T + +S+KI LLKEL+ L +G + ++FSQ++
Sbjct: 963 QIDACRLLALVQTNSNSKNLEFKPYSPASKSSKITALLKELQLLQDSSAGEQVVIFSQFS 1022
Query: 752 AFLDLLQIPL----SRNNIPFLRLDGTLNQQQREKVLKQFS 788
+LD+L+ L S++ + DG L+ ++R VL F+
Sbjct: 1023 TYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFA 1063
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 110/464 (23%), Positives = 181/464 (39%), Gaps = 94/464 (20%)
Query: 97 FVGWGDVPAMSTSKG-RKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIV 155
F+G V M+T R L+ G ++ +S +S+ S R R+ S +
Sbjct: 175 FIGALQVTGMATRPTVRPLKYGSQMKLK---RSSEEISATKVYDS--RGRKKASMASLVR 229
Query: 156 RFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEI---LGCCKSAPEVLGIMDTIVLSIRVYI 212
F + EIGR+ + ++ L PL+ ++ L C + + L I D+ +L + ++
Sbjct: 230 IFDIQYDREIGRVSEDIAQILYPLLSSHEISFEVTLIFCDN--KRLSIGDSFILQLDCFL 287
Query: 213 NSSMFR-KHHATSL-----KAGSNSAE-----------------DSVSLCHPLPNLFRLL 249
S +F ++ SL G N E +S S L LF L
Sbjct: 288 TSLIFEERNDGESLMKRRRTEGGNKREKDNGNFGRTLTETDEELESRSKRLALLKLFDKL 347
Query: 250 GITPF--KKAEFTPSDLYTRKRP----LDSKDGCGLHASLLHANKSKVQSAKVNDVDDVE 303
+ P ++ + P LD+ + C + +H N Q + E
Sbjct: 348 RLKPILDEQKALEKHKIELNSDPEIIDLDNDEICSNQVTEVHNNLRDTQHEE-------E 400
Query: 304 PISDSDVDNIVGVGYSSE----IEEMEPP-STLKCELRPYQKQALHWMVQLEK------- 351
++ + + SSE + E EP K ELR YQKQ L WM++ E+
Sbjct: 401 TMNLNQLKTFYKAAQSSESLKSLPETEPSRDVFKLELRNYQKQGLTWMLRREQEFAKAAS 460
Query: 352 -GRCLDEAATTLHPCWEAYRLLD----------------ERELVVYLNAFSGEATIEFPS 394
G + A ++P W+ ++ + E + Y N SGE ++ P
Sbjct: 461 DGEASETGANMINPLWKQFKWPNDMSWAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPI 520
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPN 454
M +GGIL+D MGLGKTV +L+L+ + + IE +SD P+
Sbjct: 521 LKTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFD------IENTAVSDNLPS 574
Query: 455 LMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
+ K + + TLI+ PM+LL QW+ K
Sbjct: 575 TWQDNKKPYA------------SKTTLIVVPMSLLTQWSNEFTK 606
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 153/332 (46%), Gaps = 64/332 (19%)
Query: 485 PMTLLGQWNKLIQKP-----YEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
PM+ +N + KP YE + K V S+LK IMLRRTK E L LPP
Sbjct: 474 PMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTK----LERADDLGLPP 529
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++V E E+D Y++L+ SK KF+ ++ +G +L+NYA+I +L+ R+RQ DHP
Sbjct: 530 RVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPD 589
Query: 600 LVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPIC 659
LV++ +KR K V +++ E C IC
Sbjct: 590 LVLA-------------SKR-------------KTV-----------DIENQENIVCKIC 612
Query: 660 LEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL---CPVCRKTISRQDLITAPTGSRFQVD 716
E +DA+ + C H CR C+ G CP C +S ++AP F +
Sbjct: 613 DEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSID--LSAPALEDFSEE 670
Query: 717 IEKN-----------WVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSR 763
KN W STKI L++EL L KSI+FSQ+T+ LDL+ L +
Sbjct: 671 KFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRK 730
Query: 764 NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
++LDG + + R ++ FS D NI +
Sbjct: 731 AGFNCVKLDGGMTPKARAATIEAFSNDINITI 762
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 45/102 (44%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVY 380
E++++E P L L P+Q++ ++W+ + E
Sbjct: 241 EVKQIEQPKELVLNLLPFQREGVYWLKRQED----------------------------- 271
Query: 381 LNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
++F G GILAD MG+GKT+ TIALLL+
Sbjct: 272 -SSFGG---------------GILADEMGMGKTIQTIALLLS 297
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 53/364 (14%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + P+E+ + L +V+SIL+PI +RRTK+ G+P++ LPP ++
Sbjct: 728 PWSNFSYWKTFVTLPFEQRKISQTLDVVKSILEPIFIRRTKNMKQSNGKPLVELPPKEVV 787
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ + E E+ Y R+ F ++ G + Y+ IL +LRLRQ C H LV S
Sbjct: 788 IEEVKFNEVEEKLYNWFKARASQSFKDGIKSGDLFKKYSQILTHILRLRQVCCHVDLVGS 847
Query: 604 RGDTQ--------DYSDLNKLAKRF-----LKGSSNALEGEDKDVPSRAYVQEVVEELQK 650
+ + D S+ N + + S +A D+ + V+ V+ L +
Sbjct: 848 ANEMEQELVDPNTDLSEANGESDSISMVNNVLDSYHADNNHDEKFKNNTEVRSVMFPLYE 907
Query: 651 G---EQGECPICLEA---FEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTIS 700
++ EC IC ++ + LTPC H C C+L + K LCP CR+ IS
Sbjct: 908 KIDLKESECSICTQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPIS 967
Query: 701 ---------------------RQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCL 739
+Q++ +FQ+ + S+KI L+ L+ L
Sbjct: 968 KYKIFKLRHRDTSVKEIRFHTKQEMEDPSQNFKFQLYLYDPTKTSSKIQCLINHLKILKE 1027
Query: 740 S--GSKSILFSQWTAFLDLLQIPLS---RNNIPFLRLDGTLNQQQREKVLKQFS---EDN 791
+ ++FSQ++++LD+++ L N+ + DG LN +R+K+L+ FS +N
Sbjct: 1028 QSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDGRLNMNERQKILENFSSQKHEN 1087
Query: 792 NIMV 795
+M+
Sbjct: 1088 KVMI 1091
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 157/414 (37%), Gaps = 99/414 (23%)
Query: 147 AVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVR-DKKVEILGCCKSAPEVLGIMDTIV 205
+++ I +++ + EIGRIP + +R L+PL+ D + L D+
Sbjct: 226 SIIRIYTIPKYTEESGREIGRIPEDITRILVPLIDLDISSFYTTVMIDTEKRLSTGDSFY 285
Query: 206 LSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITP------FKKAEF 259
+ I Y++ + F + S+ +++ + R T + ++
Sbjct: 286 IQIDCYLSQNAFSGKELERSMSQSDQDLNALKRQKKMDTRTRFDFSTETNTEAILRLRQY 345
Query: 260 TPSDLYTRK--RPLDSKDGCGLHASLLH-ANKSKVQSAKVNDVD-----DVEPISDSDVD 311
+ S + R +P+ K HA ++ A+++ + N+ D D E + +
Sbjct: 346 SLSRFFQRLNIKPIPQKSD---HADDINEASETPIIIDSENEDDHIVKEDHEQQNLDQLK 402
Query: 312 NIVGVGYSSEI-----EEMEPP-STLKCELRPYQKQALHWMVQLE--------------- 350
I+ SE+ E +PP K +LR YQK L WM+ E
Sbjct: 403 QIMQANQQSELLDSLPETTKPPIFNFKLDLRKYQKHGLSWMLTREREIAVLETLSKNDDD 462
Query: 351 -----------KGRCLDEAATTLHPCWEAYRLLDEREL---------------VVYLNAF 384
K + ++P W+ + + + Y N +
Sbjct: 463 DNDNDILTTQDKANIQERNDAFMNPLWDIFEWPKDTSMHKSESSPTEDRMDDNYFYANMY 522
Query: 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIE 444
+GE ++ P M +GGILAD MGLGKT+ T+AL+ S P D
Sbjct: 523 NGELSLTKPVIRSMVKGGILADEMGLGKTISTLALI--------------NSVPID---- 564
Query: 445 GYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
+M +E K L DK I + T TLII PM+LL QW K K
Sbjct: 565 ----------VMFEENKELE-DKTIYASKT-----TLIIVPMSLLSQWQKEFDK 602
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 160/330 (48%), Gaps = 27/330 (8%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + + P+E+ D L+++Q+++ PI+LRRTK+ D +G P++ LPP ++
Sbjct: 653 PWCKIDYWRQFVSDPFEKKDYSSALEVIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVV 712
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ ++ E Y+ +++ + + +G +L Y++IL +LRLRQ C H F ++
Sbjct: 713 IEMIRFSDTEAGLYKYFLSKAEHSVKESLARGDLLKKYSTILLHILRLRQVCCH-FKLLG 771
Query: 604 RGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVP--SRAYVQEVVEELQKG-------EQG 654
D D DL + + L GED P S + + +E+ + +
Sbjct: 772 SQDEND-EDLKNMKLINDIPDISTLLGEDSQSPGSSSEGMPDFIEDFKTKYPNSDALKDL 830
Query: 655 ECPIC----LEAFEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTI-SRQDLI 705
EC IC + V T C H C CLL K + +CP CR + SR L
Sbjct: 831 ECSICTCEAISPLTSVVFTRCGHPFCESCLLEYIQFQNKKGSETICPNCRAAVESRYLLK 890
Query: 706 TAPTGSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWTAFLDLLQIPL-- 761
+ + N +S+KI L++ L++L + + ++FSQ++++LD+L+ L
Sbjct: 891 LEDINGKLEPVPYSNTKKSSKIVALIRHLKHLQDTSANEQVVVFSQFSSYLDILENELRQ 950
Query: 762 --SRNNIPFLRLDGTLNQQQREKVLKQFSE 789
+ + + DG L+ ++R VL +F+E
Sbjct: 951 SFASDICEIYKFDGRLDLKERSNVLAKFTE 980
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 178/467 (38%), Gaps = 106/467 (22%)
Query: 70 NEIRASSENGTLAEAIAEGYSEGSEWW-FVGWGDVPAMSTS-KGRKLRRGDEVTFTFPLK 127
N+I+ +SE G I + + W F+G V AM+T + L+ G E+
Sbjct: 122 NQIKRASEGGL---PILKRKKQLCCWRRFLGSTQVNAMATRPTAQPLKYGSELLI----- 173
Query: 128 SFNSLSSKFPSKSFVRARQAVVPCSEIVRF-STKDAGEIGRIPHEWSRCLLPLVRDKKVE 186
+S P+ S +R+R+ S+ VRF + E+GR+P + S L L++ VE
Sbjct: 174 ---RRTSGQPNNSGLRSRKKP-GFSQYVRFCDATSSRELGRLPEDISEILHTLLQTPGVE 229
Query: 187 ILGC---CKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLP 243
C S + L + D V+ + ++ S +F G E L
Sbjct: 230 FKATMIFCNS--KRLSVGDLFVVRLDCFVTSLLF-----DPALPGKAEDEQFQQRNRALM 282
Query: 244 NLFRLLGITPFKK-AEFTPS--DLY-----------TRKRPLDSKDGCGLHASLLHANKS 289
LF+ L +TP + A+ P + Y T P S D L+ L + +S
Sbjct: 283 LLFKNLNMTPLAEGADLVPEKPEFYDLEEDESITDATVNSPTASDDYMDLN-QLRNFYRS 341
Query: 290 KVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
+SA + + + P P + ELR YQKQ L WM+
Sbjct: 342 TQESASIFKLRETTP----------------------PVDKFQLELRRYQKQGLTWMLLR 379
Query: 350 EKGRCLDEAATT-------LHPCWEAYRLLDERELVV-----------------YLNAFS 385
E+ + E + + P W ++ + V Y N +
Sbjct: 380 EREHAILEPGSQDALADGPMDPMWRMFKWPRDTSWDVSRGTTYVSLEADIPDKFYANLHT 439
Query: 386 GEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEG 445
GE ++ P + + +GGILAD MGLGKT+ +AL+ PSD
Sbjct: 440 GEFSLVKPISKSILKGGILADEMGLGKTISILALI--------------TMVPSDTKHLL 485
Query: 446 YDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
++ P LS++ I TLI+ PM+LL QW
Sbjct: 486 TTAQEKPP------VGHLSLELGISTVKPYTASTTLIVVPMSLLPQW 526
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 59/298 (19%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+Q++LK IMLRRTK E L LPP + V E EKD Y +L+ SK K++
Sbjct: 434 IQTLLKNIMLRRTKV----ERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNS 489
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEG 630
FVE+G +L+NYA+I L+ R+RQ DHP LV+ R N G
Sbjct: 490 FVEEGVVLNNYANIFTLITRMRQLADHPDLVLKR--------------------LNNFPG 529
Query: 631 EDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECL---LGSWKTP 687
+D V V+ C +C + E+ + + C H+ CR C+ + S+
Sbjct: 530 DDIGV--------VI----------CQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMEN 571
Query: 688 TSGL-CPVCRKTIS--------RQDLITAPTGSRF-QVDIEKNWVESTKIAVLLKELENL 737
+ L CPVC +S DL + S ++++ W STKI L++EL L
Sbjct: 572 NNKLTCPVCHIGLSIDLSQPALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKL 631
Query: 738 CLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ KSI+FSQ+T+ LDL++ L R ++L G+++ QR++ +K F NNI
Sbjct: 632 RSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFM--NNI 687
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 401 GGILADAMGLGKTVMTIALLLT 422
GG+LAD MG+GKT+ TIALL+
Sbjct: 205 GGVLADEMGMGKTIQTIALLMN 226
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 68/340 (20%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
+K + +LK ++LRRTK+ T +G+PIL LPP +L+ +E +FY L ++++
Sbjct: 614 MKRFRGLLKAVLLRRTKN-TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQ 672
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNA 627
+++++G I +Y S+L LLLRLRQ C HP+L+++R D +D +
Sbjct: 673 MRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDND--------------S 718
Query: 628 LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAF-EDAVLTPCAHRLCRECLLG---- 682
+ +++ + ++ Y E V L+ E +C +C++ E ++ PC H LCRECL
Sbjct: 719 FQAKNRAIYNQIY-PEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
Query: 683 ----SWKTPTSGL---CPVCRKTISRQDLITAPTGSRFQ-----VDIE------------ 718
+ +T + C VC + I + L++ R+ VD +
Sbjct: 778 SEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDADNKLRTENISELL 837
Query: 719 ---------------------KNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLD 755
K+W STKI L ++ + K ++FSQ+ +FL+
Sbjct: 838 PKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLE 897
Query: 756 LLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
L +P + I +L G L+ +R + L F D N+ V
Sbjct: 898 LFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRV 937
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 400 RGGILADAMGLGKTVMTIALLLT 422
+GGILAD MGLGKTV +ALL+T
Sbjct: 410 KGGILADDMGLGKTVQALALLVT 432
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 154/324 (47%), Gaps = 38/324 (11%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDER-GLKLVQSILKPIMLRRTKS----STDREGRP-I 534
L I P W I P +G+E K ++ +L IMLRRTK+ + ++G
Sbjct: 430 LHINPFNDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGA 489
Query: 535 LVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQC 594
L L + + C+ E+E+DFY L + + FV G++ NY +IL LLLRLRQ
Sbjct: 490 LKLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQA 549
Query: 595 CDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALE-GEDKDVPSRAYVQEVVEELQKGEQ 653
C+HP + + + QD N L G++N + D+DV A + E V E+ ++
Sbjct: 550 CNHPQSLNFQFE-QDVDAFNA-----LDGAANTNKLASDQDVDDLANLLETV-EIGSRKK 602
Query: 654 GECPICLEAFEDAVLTPCAH-RLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSR 712
C IC+ A L P H + C++C ++K G+ KT+ + I
Sbjct: 603 SFCTICM-----AELPPDFHEKKCKDC-SRNFKELDKGIQDPNDKTLYKSSKIR------ 650
Query: 713 FQVDIEKNWVESTKIAVLLKELENLCLSG-SKSILFSQWTAFLDLLQIPLSRNNIPFLRL 771
E KI L ++ E+ + G K+I+FSQ+T FLD++ + L + I F+R
Sbjct: 651 ----------EILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRY 700
Query: 772 DGTLNQQQREKVLKQFSEDNNIMV 795
DG +N + REK L D+ V
Sbjct: 701 DGRMNNRAREKSLDLLRSDSGTQV 724
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 399 ARGGILADAMGLGKTVMTIALLLTH 423
A GGILAD MGLGKT+ IAL+L+H
Sbjct: 255 ASGGILADDMGLGKTIQMIALILSH 279
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 138/341 (40%), Gaps = 66/341 (19%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E LK ++ +L + RRTK T PI+ LPP ++ + L E+ Y +
Sbjct: 471 EAALKRLRILLASTVFRRTKE-TRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSA 529
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGS 624
+ D + L Y +L LLRLRQ C HP+LV S L S
Sbjct: 530 QSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSS---------------LDNS 574
Query: 625 SNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLE-AFEDAVLTPCAHRLCRECL--- 680
+ E+ ++ +E + + C +CL+ + PC H C+EC+
Sbjct: 575 FRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSML 634
Query: 681 ----LGSWKTPT-SGLCPVCRKTISRQDLITA--------PTGSRFQVDIEKN------- 720
GS T T CP+CR I + L+ A P S Q++++ N
Sbjct: 635 VGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQLELDMNQSFSEQE 694
Query: 721 ------------------------WVESTKIAVLLKELENLCLS--GSKSILFSQWTAFL 754
W S+K+ + + ++ S K +++SQ++ +L
Sbjct: 695 SIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYL 754
Query: 755 DLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
L+ L NI +R DGT++ QR+K L F+ D +++V
Sbjct: 755 CLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLV 795
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGL 429
GG++AD MGLGKT+ TIALLLT + L
Sbjct: 271 GGVMADDMGLGKTIQTIALLLTQKSQDPL 299
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 78/358 (21%)
Query: 491 QWNKLIQKPYEEGDER-GLKLVQSILKPIMLRRTKSSTDR-EGRPILVLPPADMQVIYCE 548
Q NK Q Y+ D + L+ V+ +L IMLRR+K+ D+ +G+P+L LPP ++V
Sbjct: 1174 QRNKQYQ--YDNEDRKNALRKVRVLLNAIMLRRSKA--DKIDGKPLLELPPKIVEVDESR 1229
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ 608
L E FY AL +++ + + +Y+S+L LLLRLRQ C H LV+
Sbjct: 1230 LKGEELKFYTALESKNQALAKKLLNNS-TRGSYSSVLTLLLRLRQACCHSELVV------ 1282
Query: 609 DYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE---------CPIC 659
+ ++ +G+ A +D R Y + + + Q + C C
Sbjct: 1283 -------MGEKKAEGTKVANGKSFEDDWLRLYYK--ITHMSGEAQAQVITSMNSMTCFWC 1333
Query: 660 LEAFED---AVLTPCAHRLCREC---------LLGSWKTPTSGL----CPVCRKTISRQD 703
+E E +VLT C H +C C +L K G C C++ + +D
Sbjct: 1334 MEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQRLTNEKD 1393
Query: 704 LITAP--------------TGSRFQVDIEKNWVE--------------STKIAVLLKELE 735
+++ + + ++EK ++ STKI ++ ++
Sbjct: 1394 IVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453
Query: 736 NLCLSGS--KSILFSQWTAFLDLLQIPLSRN-NIPFLRLDGTLNQQQREKVLKQFSED 790
+ + K I+FSQ+T F ++L+ L N P+L+ G++N Q+R V+ +F D
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRD 1511
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 400 RGGILADAMGLGKTVMTIALLLTH 423
+GG+LAD MGLGKT+ IAL+L +
Sbjct: 963 KGGLLADDMGLGKTIQAIALMLAN 986
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2
Length = 1162
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 36/298 (12%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G ++G + + + K ++LRRTK D GRP+++LP Q+ + +L+E E+ Y
Sbjct: 799 DNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRF 620
F RS+ ++++ SRG+ S N ++
Sbjct: 859 FARSRSALQSYLKRHE--------------------------SRGNQSGRSPNNPFSRVA 892
Query: 621 LK-GSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCREC 679
L+ GS E D P R+ ++ +L + Q C + L + L P L E
Sbjct: 893 LEFGSEEPRHSEAADSP-RSSTVHILSQLLRLRQCCCHLSLLK---SALDPM--ELKGEG 946
Query: 680 LLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCL 739
L+ S + S L + S + G+ F++++ + ESTKI+ LL ELE +
Sbjct: 947 LVLSLEEQLSALT-LSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQR 1005
Query: 740 SGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
+ + KS++ SQWT L ++ + L ++ + + +DG++N +QR +++ F+ V
Sbjct: 1006 NSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQV 1063
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
Q +GGILAD MGLGKT+ IAL+LT Q+ + + + D D
Sbjct: 587 QKPQGGILADDMGLGKTLTMIALILT--QKNQEKKEEKEKSTALTWLSKDDSCD------ 638
Query: 457 KKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
+ GTLIICP +L+ W ++K
Sbjct: 639 ------------------FTSHGTLIICPASLIHHWKNEVEK 662
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
Length = 1138
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 38/299 (12%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G +G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y+
Sbjct: 775 DNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIF 834
Query: 561 FKRSKVKFDQFV--EQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAK 618
RS+ ++ ++GR H+ S D+PF +++A+
Sbjct: 835 LARSRSALQSYLKRQEGRGSHHGRSP-----------DNPF--------------SRVAQ 869
Query: 619 RFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRE 678
F S D PS +V + L+ +C C + + L P L E
Sbjct: 870 EFGSSVSQGCPAADSQRPSTVHVLSQLLRLR-----QC-CCHLSLLKSALDPT--ELESE 921
Query: 679 CLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL- 737
L+ S + S L + + +S + G+ F+ ++ + STK++ LL ELE +
Sbjct: 922 GLVLSLEEQLSALT-LSKVDVSEPSPTVSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQ 980
Query: 738 -CLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
KS++ SQWT+ L ++ + L +N + + +DG++N +QR +++ F+ V
Sbjct: 981 KGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQV 1039
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 28/103 (27%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
Q +GGILAD MGLGKT+ IAL+LT +
Sbjct: 563 QKPQGGILADDMGLGKTLTMIALILTKKNQ---------------------------QKS 595
Query: 457 KKEPKSLSIDKLIKQ-TNTLINGGTLIICPMTLLGQWNKLIQK 498
K++ +S + L K ++ + GTLI+CP +L+ W ++K
Sbjct: 596 KEKERSEPVTWLSKNDSSVFTSSGTLIVCPASLIHHWKNEVEK 638
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1
SV=1
Length = 1674
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
LRPYQ++A++WM+Q E+ R A +LH W ++ L +Y N ++G +FP
Sbjct: 299 LRPYQREAVNWMLQQEQFRSAPPADNSLHFLWR--EIVTPDGLKLYYNPYTGCIIRDFPH 356
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSP 453
GGILAD MGLGKTV +AL+LTH+++ Q A +G + Y I P
Sbjct: 357 AGPQLLGGILADEMGLGKTVEVLALILTHTRQ---DVKQDALTLPEGKVVNYFIPTHCP 412
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC +GS ++ S C +CR+T S +++
Sbjct: 1423 CPICARQLGKQWAVLT-CGHCFCNECTSIIIEQYSVGSHRS--SIKCAICRQTTSHKEVS 1479
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1480 YVFTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1539
Query: 762 SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
+ NN+ F ++ Q+ L F D +I +
Sbjct: 1540 TDNNMEFTQISRIKTFQEN---LSAFKYDPHINI 1570
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + W +L+ PY + + + L S + IM R K + + +PP
Sbjct: 856 LGIEPYCVKHWWIRLLYHPYCKKNPQHL---YSFIAKIMWRSAKKDVIDQ----IQIPPQ 908
Query: 541 DMQVIYCELTEAEKDFY----EALFKRSKVKFDQFVEQGRIL-----HNYASILELLLRL 591
++ + + E+ FY E + + VK + + L +SIL LLRL
Sbjct: 909 TEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRL 968
Query: 592 RQCCDHPFLVMSRGD 606
RQ C HP V RG+
Sbjct: 969 RQACCHPQAV--RGE 981
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
LRPYQ++A++WM+Q E R + LH W ++ L +Y N ++G E+P+
Sbjct: 304 LRPYQREAVNWMLQQECFRSSPATESALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPN 361
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQR 426
+ GGILAD MGLGKTV +AL+LTH+++
Sbjct: 362 SGPQLLGGILADEMGLGKTVEVLALILTHTRQ 393
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC+ +GS ++ S C +CR+T S +++
Sbjct: 1432 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRS--SIKCAICRQTTSHKEIS 1488
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1489 YVFTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1548
Query: 762 SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
+ NN+ F ++ Q+ L F D I +
Sbjct: 1549 TDNNMEFAQISRVKTFQEN---LSAFKRDPQINI 1579
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + W +L+ +PY + + + L S + I+ R K + + +PP
Sbjct: 865 LGIEPYCVKHWWVRLLYRPYCKKNPQHL---YSFIAKILWRSAKKDVIDQ----IQIPPQ 917
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYA------------SILELL 588
++ + + E+ FY ++ +V V + R + ++A SIL L
Sbjct: 918 TEEIHWLHFSPVERHFYH---RQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPL 974
Query: 589 LRLRQCCDHPFLVMSRGD 606
LRLRQ C HP V RG+
Sbjct: 975 LRLRQACCHPQAV--RGE 990
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 665 EEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 718
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 719 F----SFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 784 KLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID 843
Query: 786 QF 787
+F
Sbjct: 844 RF 845
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1B OS=Danio
rerio GN=smarcad1b PE=3 SV=1
Length = 954
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 73/282 (25%)
Query: 514 ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVE 573
I+KP +LRR KS ++ LP + QV +C ++E +++ Y AL K+K E
Sbjct: 644 IMKPFILRRVKSEVLKQ------LPAKEEQVEFCAMSERQQELYSALLH--KLKHSSNGE 695
Query: 574 QGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDK 633
+ R L N ++++LR+ +HP L T+ L ++K LK S+ D
Sbjct: 696 K-RELTN------VMMQLRKMSNHPLLHRQFYTTEK---LKAMSKLMLKEPSH----RDA 741
Query: 634 DVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCP 693
D A ++E +E L FE HRLC++
Sbjct: 742 DP---ALIKEDME------------VLSDFE-------LHRLCQQ--------------- 764
Query: 694 VCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAF 753
+A + D+ ++S K+++L + L +L G + +LFSQ+T
Sbjct: 765 -----------YSALHEYQLNTDV---LLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMM 810
Query: 754 LDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
LD+L++ L + + RLDG+ R ++ QF+ D +I V
Sbjct: 811 LDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDIFV 852
>sp|O42861|FFT3_SCHPO ATP-dependent helicase fft3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft3 PE=1 SV=1
Length = 922
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 78/302 (25%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E+ + + ++ P +LRR KS + LP + +CE +E E+ Y+ +
Sbjct: 597 EQRVSRAKMMMAPFVLRRKKSQV------LDALPKKTRIIEFCEFSEEERRRYDDFASKQ 650
Query: 565 KVK--FDQFVEQGRILHNYASILE-------LLLRLRQCCDHPFLVMSRGDTQDYSDLNK 615
V D+ V + + N A++ + +L++LR+ DHP L
Sbjct: 651 SVNSLLDENVMKTNLDTN-ANLAKKKSTAGFVLVQLRKLADHPML--------------- 694
Query: 616 LAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCA--H 673
KD R + ++ E Q + E I FED H
Sbjct: 695 ------------FRIHYKDDILRQMAKAIMNEPQYKKANELYI----FEDMQYMSDIELH 738
Query: 674 RLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKE 733
LC C+ P+ + FQ+ E W+++TK+ L K
Sbjct: 739 NLC------------------CK----------FPSINSFQLKDEP-WMDATKVRKLKKL 769
Query: 734 LENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
L N +G + +LFSQ+T LD+LQ+ + N+ FLR DG+ R+ ++ QF D +I
Sbjct: 770 LTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESI 829
Query: 794 MV 795
V
Sbjct: 830 NV 831
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1173 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1226
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1227 FA----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1259
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1292 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1351
Query: 786 QFS 788
+FS
Sbjct: 1352 RFS 1354
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1172 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1225
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1226 FT----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1291 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1350
Query: 786 QFSE 789
+FS+
Sbjct: 1351 RFSK 1354
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1162 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1215
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1216 FT----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1248
Score = 36.6 bits (83), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G + ++FSQ LD+L+ L + P+ R+DG + R+ +
Sbjct: 1281 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1340
Query: 786 QFSE 789
+FS+
Sbjct: 1341 RFSK 1344
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYR-LLDERELVVYLNAFSGEAT 389
L EL P+Q + L WM + E+ + L + L P W + L D+R +VY+N G T
Sbjct: 214 LSSELLPFQMRVLEWMKRREEEKFL--TSNDLPPLWYHCKSLFDDR--MVYVNHVYGYMT 269
Query: 390 IEFPSTLQMA----RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEG 445
T +A RGGILAD MG+GKT+ + L+L H L+
Sbjct: 270 FSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQLPISLTD-------------- 315
Query: 446 YDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
+ + D+++ + N + TLII P T+L QW
Sbjct: 316 ----------------TCTFDQVVGK-NVKYSKATLIITPSTILDQW 345
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 41/191 (21%)
Query: 638 RAYVQEVVEELQ-KGEQGE-CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695
R Y+ + E + K E + C IC + + +T C H C CL K +S CP+C
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSS--CPMC 1129
Query: 696 ---------------RKTISRQDLITA--PTGSRFQV----------DIEKNWVESTKIA 728
R SRQ+ +T R ++ ++E +KI
Sbjct: 1130 KTKLNKNNAYYIGESRDIYSRQEFVTGFNKRDERLEILDDEAYRQISNMELKESFGSKID 1189
Query: 729 VLLKELENLCLSGS----KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVL 784
+ K L L L + K ++FSQW LD+L N I F+R DG + + L
Sbjct: 1190 TISKHL--LYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDG----KSKNTCL 1243
Query: 785 KQFSEDNNIMV 795
K+F E+ ++ V
Sbjct: 1244 KRFKEERSLQV 1254
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +QSILKP+MLRR K ++ L P +I ELT+ +K +Y A+ +R+
Sbjct: 1051 EEQVQKLQSILKPMMLRRLKEDVEKN------LAPKQETIIEVELTDVQKKYYRAILERN 1104
Query: 565 KVKFDQFVEQGRILH-NYASILELLLRLRQCCDHPFLV 601
F+ G + N ++L ++ LR+CC+HP+L+
Sbjct: 1105 F----SFLSMGATQNSNVPNLLNTMMELRKCCNHPYLI 1138
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ +L K L L G K ++FSQ LD+L+ L + R+DG + R+ +
Sbjct: 1171 KLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1230
Query: 786 QFSE 789
+FS+
Sbjct: 1231 RFSK 1234
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster
GN=lds PE=1 SV=2
Length = 1061
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 139/327 (42%), Gaps = 37/327 (11%)
Query: 484 CPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P L W K I G R + ++K +MLRRTK+ +G+ + LP +++
Sbjct: 652 SPFDDLHTWKKWIDNKSAGGQNR----LNLLMKSLMLRRTKAQLQSDGK-LNSLPNKELR 706
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+I L + E + Y+ + S+ F QF LH A E R + P
Sbjct: 707 LIEISLDKEEMNVYQTVMTYSRTLFAQF------LHQRAE-RETDFNYRSDANKPTYNQI 759
Query: 604 RGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQ-----EVVEELQKGEQGECPI 658
+ Y +++ R + GS ++ D V Q +++ + GE+ +
Sbjct: 760 KDPNGAYYKMHEKFAR-MAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMG 818
Query: 659 CLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIE 718
+ D TP L + L T T G V L+ P +R
Sbjct: 819 DHSSDSD---TPEIDLLAQLNKLAITDTSTDGQQSVANAGDDGPPLL--PDEARI-AKAS 872
Query: 719 KNWVE-----------STKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSRNN 765
KN ++ S+KI ++++ L+ L S K+I+ SQWT+ LD+L+ LS++
Sbjct: 873 KNLLKRSNPVFNLHRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDG 932
Query: 766 IPFLRLDGTLNQQQREKVLKQFSEDNN 792
+ L L+GT+ + R+ ++ +F++ NN
Sbjct: 933 VATLSLNGTIPVKNRQDIVNEFNDRNN 959
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
++ RGGILAD MGLGKT+ I+ +L ++ + S+G + S +
Sbjct: 456 KLPRGGILADDMGLGKTLTMISSVL---------ACKNGQEMSEG--KDESSDSDSEDDK 504
Query: 457 KKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
K+ KS++ K + +T GGTL++CP +LL QW
Sbjct: 505 NKKRKSVTGWKSKGRKDTR-RGGTLVVCPASLLRQW 539
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y A+ +++
Sbjct: 1064 EEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYYRAILEKN 1117
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1118 F----SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1150
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 959 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1012
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1013 F----SFLTKGASQSNTPNLLNTMMELRKCCNHPYLI 1045
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKV 783
S K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+
Sbjct: 1076 SGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAA 1135
Query: 784 LKQFS 788
+ +FS
Sbjct: 1136 IDRFS 1140
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1017 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1070
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1071 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1103
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1136 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1195
Query: 786 QFSE 789
+FS+
Sbjct: 1196 RFSK 1199
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 33.5 bits (75), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1134 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1193
Query: 786 QFSE 789
+FS+
Sbjct: 1194 RFSK 1197
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 33.5 bits (75), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785
K+ ++ K L L G K ++FSQ LD+L+ L + + R+DG + R+ +
Sbjct: 1134 KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 1193
Query: 786 QFSEDNN 792
+FS+ ++
Sbjct: 1194 RFSKPDS 1200
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y A+ +++
Sbjct: 1063 EEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYYRAILEKN 1116
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1117 F----SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1149
>sp|Q5FWR0|SMRCD_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Xenopus
tropicalis GN=smarcad1 PE=2 SV=1
Length = 1003
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 77/288 (26%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ I+KP +LRR KS ++ LPP ++ +C++++ ++ Y L + K D
Sbjct: 688 AKQIMKPFILRRVKSEVLKQ------LPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSIDA 741
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS--DLNKLAKRFLKGSSNAL 628
E+ L N +++ LR+ +HP L Q Y+ L ++K LK ++
Sbjct: 742 -TEKNSELCN------VMMHLRKMANHPLL-----HRQYYTADRLRTMSKLMLKEPTHCD 789
Query: 629 EGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT 688
D + E+++ + FE HRLC E
Sbjct: 790 ANPDL----------IFEDME---------VMTDFE-------LHRLCNEFT-------- 815
Query: 689 SGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWV-ESTKIAVLLKELENLCLSGSKSILF 747
T+S Q +EK + +S K +L K L ++ G + +LF
Sbjct: 816 ---------TLS-------------QYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLF 853
Query: 748 SQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
SQ+T LD++++ L + ++RLDG +R ++ +F+ D +I +
Sbjct: 854 SQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDIFI 901
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft2 PE=1 SV=1
Length = 1284
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 128/298 (42%), Gaps = 82/298 (27%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVI-YCELTEAEKDFYE---ALFKRSKV 566
++++ P +LRR K+ +L P Q+I +C+L+E + + Y AL K ++
Sbjct: 766 AKTMMTPFVLRRRKNQ-------VLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQL 818
Query: 567 KFDQFVEQ---------GRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLA 617
+ D + G+ L S +L++LR+ +H L D + L ++A
Sbjct: 819 RRDDKRNKRSKNDEESDGKSL----SAGHVLMQLRKAANHALLFRKFYDDEK---LKQMA 871
Query: 618 KRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCR 677
K ++ E + K+ + Y+ E +E + FE HRLCR
Sbjct: 872 KDIMQ------EEQYKNA-NEQYIYEDME------------VMSDFE-------LHRLCR 905
Query: 678 ECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL 737
+ PT + + + W++S KI VL + L +
Sbjct: 906 ----------------------------SFPTLQSYTLK-DDPWMDSGKIRVLKELLPKM 936
Query: 738 CLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795
GS+ +LFSQ+T LD+L+ L I ++RLDG+ + R+ ++ QF ++ ++ V
Sbjct: 937 KEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTV 994
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700
E+ CP+C+E F+D V+ C H CR C+ +W+ +S CP CR++I+
Sbjct: 140 AEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESIT 189
>sp|P31380|FUN30_YEAST ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=FUN30 PE=1 SV=1
Length = 1131
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 76/302 (25%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
+ + ++++KP +LRR R+ + + LPP + YCEL +K Y+ +
Sbjct: 784 QEAITRAKTMMKPFILRR------RKDQVLKHLPPKHTHIQYCELNAIQKKIYDKEIQIV 837
Query: 565 KVKFDQFVEQGRILHN--------YASILELLLRLRQCCDHPFLVMSRGDTQDYSD--LN 614
++ + ++ G + + +S L++ LR+ HP L + Y+D +
Sbjct: 838 -LEHKRMIKDGELPKDAKEKSKLQSSSSKNLIMALRKASLHPLLFRNI-----YNDKIIT 891
Query: 615 KLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHR 674
K++ L + A G ++ Y++E + + E H+
Sbjct: 892 KMSDAILDEPAYAENG------NKEYIKEDMSYMTDFE-------------------LHK 926
Query: 675 LCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKEL 734
LC C + T S++Q+ ++ W++S KI L K L
Sbjct: 927 LC--CNFPN-------------------------TLSKYQLHNDE-WMQSGKIDALKKLL 958
Query: 735 ENLCLSGSKSIL-FSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793
+ + + + +L FS +T LD+L++ LS + FLRLDG+ R+ ++ +F ED +I
Sbjct: 959 KTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDI 1018
Query: 794 MV 795
+
Sbjct: 1019 PI 1020
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 298,238,301
Number of Sequences: 539616
Number of extensions: 12785441
Number of successful extensions: 33637
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 491
Number of HSP's that attempted gapping in prelim test: 32086
Number of HSP's gapped (non-prelim): 1668
length of query: 812
length of database: 191,569,459
effective HSP length: 126
effective length of query: 686
effective length of database: 123,577,843
effective search space: 84774400298
effective search space used: 84774400298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)