Query 003540
Match_columns 812
No_of_seqs 422 out of 1889
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 1.6E-63 3.5E-68 531.7 19.0 399 322-807 172-704 (791)
2 KOG0385 Chromatin remodeling c 100.0 3E-56 6.5E-61 497.8 17.9 318 327-807 159-554 (971)
3 KOG0389 SNF2 family DNA-depend 100.0 1.6E-54 3.4E-59 486.0 17.3 365 326-807 389-843 (941)
4 KOG0387 Transcription-coupled 100.0 5.7E-54 1.2E-58 482.3 15.4 319 325-807 196-613 (923)
5 KOG1001 Helicase-like transcri 100.0 1.3E-50 2.7E-55 471.5 18.1 519 193-807 6-605 (674)
6 KOG0391 SNF2 family DNA-depend 100.0 3.1E-50 6.7E-55 459.9 18.7 220 325-604 606-908 (1958)
7 KOG0392 SNF2 family DNA-depend 100.0 4.7E-50 1E-54 464.4 19.2 348 311-807 952-1409(1549)
8 KOG0384 Chromodomain-helicase 100.0 3E-50 6.4E-55 468.7 14.5 320 333-807 369-766 (1373)
9 KOG4439 RNA polymerase II tran 100.0 1.8E-49 4E-54 439.8 18.0 372 324-807 315-813 (901)
10 PLN03142 Probable chromatin-re 100.0 1.5E-48 3.3E-53 470.5 22.7 318 325-807 160-554 (1033)
11 KOG0388 SNF2 family DNA-depend 100.0 2.9E-47 6.2E-52 420.1 17.1 399 324-807 557-1109(1185)
12 KOG0386 Chromatin remodeling c 100.0 2.3E-47 5E-52 437.2 11.1 337 310-807 369-793 (1157)
13 KOG0390 DNA repair protein, SN 100.0 3.8E-40 8.2E-45 381.3 20.0 336 325-808 229-663 (776)
14 KOG1015 Transcription regulato 100.0 2.2E-40 4.9E-45 374.1 11.6 413 325-807 659-1232(1567)
15 COG0553 HepA Superfamily II DN 100.0 1.6E-34 3.5E-39 357.0 17.7 333 329-807 333-777 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.5E-35 3.2E-40 329.5 5.7 397 323-806 243-803 (1387)
17 KOG0383 Predicted helicase [Ge 100.0 1.2E-33 2.5E-38 325.0 11.2 320 325-806 283-696 (696)
18 KOG1000 Chromatin remodeling p 100.0 1.4E-31 3E-36 288.0 12.1 296 321-808 186-559 (689)
19 PF00176 SNF2_N: SNF2 family N 99.9 2.2E-27 4.8E-32 256.8 2.1 196 398-601 24-299 (299)
20 PRK04914 ATP-dependent helicas 99.9 2.9E-23 6.4E-28 251.1 16.2 82 723-807 477-560 (956)
21 KOG0298 DEAD box-containing he 99.8 3.3E-19 7.2E-24 211.0 8.2 125 654-807 1154-1281(1394)
22 TIGR00603 rad25 DNA repair hel 99.7 1.5E-16 3.2E-21 187.3 16.5 78 724-807 479-556 (732)
23 PF08797 HIRAN: HIRAN domain; 99.6 1.1E-15 2.4E-20 140.4 6.9 100 98-211 1-107 (107)
24 PRK13766 Hef nuclease; Provisi 99.4 8.4E-12 1.8E-16 153.1 21.6 83 723-807 345-437 (773)
25 COG1111 MPH1 ERCC4-like helica 98.9 1.1E-07 2.3E-12 105.8 20.1 83 723-807 346-439 (542)
26 COG1061 SSL2 DNA or RNA helica 98.8 7.4E-08 1.6E-12 110.4 18.1 262 400-807 56-346 (442)
27 PHA02558 uvsW UvsW helicase; P 98.8 3.9E-08 8.4E-13 114.7 15.0 82 725-807 328-409 (501)
28 PLN03208 E3 ubiquitin-protein 98.7 1.1E-08 2.4E-13 101.3 3.3 58 650-707 15-86 (193)
29 PF15227 zf-C3HC4_4: zinc fing 98.5 7.5E-08 1.6E-12 72.6 1.9 40 656-695 1-42 (42)
30 smart00504 Ubox Modified RING 98.4 9.9E-08 2.1E-12 78.7 2.6 51 654-706 2-52 (63)
31 KOG0320 Predicted E3 ubiquitin 98.4 1.1E-07 2.4E-12 91.8 2.3 55 650-706 128-184 (187)
32 KOG0317 Predicted E3 ubiquitin 98.4 1.8E-07 3.9E-12 97.0 2.8 54 651-706 237-290 (293)
33 PF13920 zf-C3HC4_3: Zinc fing 98.3 2.5E-07 5.5E-12 72.7 1.4 47 653-701 2-49 (50)
34 PF13923 zf-C3HC4_2: Zinc fing 98.3 2.8E-07 6E-12 68.5 1.3 38 656-695 1-39 (39)
35 KOG2164 Predicted E3 ubiquitin 98.3 4.1E-07 9E-12 101.1 3.1 56 653-708 186-244 (513)
36 KOG1123 RNA polymerase II tran 98.2 6.9E-06 1.5E-10 90.8 11.8 77 723-805 525-601 (776)
37 PHA02929 N1R/p28-like protein; 98.2 8E-07 1.7E-11 92.1 3.8 48 651-700 172-227 (238)
38 PF11496 HDA2-3: Class II hist 98.2 1.1E-05 2.3E-10 87.3 11.0 161 541-802 4-192 (297)
39 PF00097 zf-C3HC4: Zinc finger 98.1 8E-07 1.7E-11 66.7 1.1 40 656-695 1-41 (41)
40 KOG0823 Predicted E3 ubiquitin 98.1 1.1E-06 2.5E-11 88.7 2.0 58 650-707 44-102 (230)
41 TIGR00599 rad18 DNA repair pro 98.1 3.6E-06 7.8E-11 93.4 5.3 51 652-704 25-75 (397)
42 cd00079 HELICc Helicase superf 98.1 2.2E-05 4.8E-10 73.6 9.8 83 724-808 11-93 (131)
43 PF13639 zf-RING_2: Ring finge 98.0 9.9E-07 2.2E-11 67.3 0.1 41 654-696 1-44 (44)
44 PF04564 U-box: U-box domain; 98.0 4.3E-06 9.3E-11 71.3 3.6 52 654-706 5-56 (73)
45 PHA02926 zinc finger-like prot 98.0 6.3E-06 1.4E-10 82.7 4.3 53 648-700 165-230 (242)
46 COG5574 PEX10 RING-finger-cont 98.0 3.1E-06 6.6E-11 86.9 1.8 54 651-704 213-266 (271)
47 PF14634 zf-RING_5: zinc-RING 97.9 8E-06 1.7E-10 62.3 2.9 41 655-697 1-44 (44)
48 cd00162 RING RING-finger (Real 97.8 1E-05 2.3E-10 61.1 2.5 44 655-699 1-45 (45)
49 PF13445 zf-RING_UBOX: RING-ty 97.7 8.5E-06 1.8E-10 61.6 0.5 37 656-693 1-43 (43)
50 KOG0287 Postreplication repair 97.7 1.2E-05 2.6E-10 84.5 1.0 49 654-704 24-72 (442)
51 smart00184 RING Ring finger. E 97.6 2.9E-05 6.4E-10 56.5 2.2 39 656-695 1-39 (39)
52 KOG0978 E3 ubiquitin ligase in 97.6 1.7E-05 3.6E-10 92.8 1.3 53 654-707 644-696 (698)
53 KOG0354 DEAD-box like helicase 97.6 0.0012 2.5E-08 78.2 16.2 83 723-807 393-488 (746)
54 COG5432 RAD18 RING-finger-cont 97.6 2.3E-05 5E-10 80.8 1.5 45 654-700 26-70 (391)
55 PF14835 zf-RING_6: zf-RING of 97.6 3.8E-05 8.3E-10 62.2 2.4 47 654-704 8-55 (65)
56 TIGR00570 cdk7 CDK-activating 97.5 6E-05 1.3E-09 80.5 3.6 50 654-704 4-58 (309)
57 KOG0331 ATP-dependent RNA heli 97.4 0.00043 9.3E-09 79.2 9.1 83 723-807 322-405 (519)
58 PTZ00110 helicase; Provisional 97.3 0.00086 1.9E-08 79.3 10.3 83 723-807 359-441 (545)
59 KOG0824 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 76.3 2.3 53 653-706 7-59 (324)
60 KOG4172 Predicted E3 ubiquitin 97.3 7E-05 1.5E-09 58.0 0.2 47 653-700 7-54 (62)
61 KOG0333 U5 snRNP-like RNA heli 97.2 0.0011 2.4E-08 74.4 9.1 82 722-807 500-581 (673)
62 KOG2177 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 78.1 2.2 43 652-696 12-54 (386)
63 COG0513 SrmB Superfamily II DN 97.0 0.0023 5.1E-08 75.0 9.5 79 725-807 259-337 (513)
64 KOG0298 DEAD box-containing he 97.0 0.00029 6.3E-09 86.0 1.6 82 518-603 599-693 (1394)
65 PF12678 zf-rbx1: RING-H2 zinc 96.9 0.00044 9.5E-09 58.9 1.9 42 653-696 19-73 (73)
66 KOG0311 Predicted E3 ubiquitin 96.9 0.00026 5.7E-09 75.6 0.4 48 653-701 43-91 (381)
67 PRK04837 ATP-dependent RNA hel 96.8 0.0052 1.1E-07 70.4 9.7 80 724-807 240-319 (423)
68 PF14555 UBA_4: UBA-like domai 96.7 0.0011 2.4E-08 50.3 2.6 40 7-48 1-40 (43)
69 smart00490 HELICc helicase sup 96.7 0.0034 7.5E-08 53.3 5.9 50 756-807 2-51 (82)
70 KOG4265 Predicted E3 ubiquitin 96.7 0.00064 1.4E-08 73.3 1.2 50 650-701 287-337 (349)
71 PRK01297 ATP-dependent RNA hel 96.7 0.0082 1.8E-07 69.9 10.5 81 723-807 319-399 (475)
72 PRK04537 ATP-dependent RNA hel 96.6 0.0071 1.5E-07 72.0 9.9 80 724-807 242-321 (572)
73 PF00271 Helicase_C: Helicase 96.6 0.0034 7.5E-08 53.6 4.8 47 759-807 1-47 (78)
74 COG5540 RING-finger-containing 96.5 0.00094 2E-08 69.8 1.4 47 653-700 323-372 (374)
75 PRK11776 ATP-dependent RNA hel 96.5 0.012 2.6E-07 68.3 10.2 80 724-807 227-306 (460)
76 KOG0330 ATP-dependent RNA heli 96.5 0.0053 1.2E-07 66.9 6.5 80 724-807 285-364 (476)
77 PRK11192 ATP-dependent RNA hel 96.4 0.012 2.6E-07 67.7 9.9 80 724-807 230-309 (434)
78 PF11789 zf-Nse: Zinc-finger o 96.3 0.0014 3.1E-08 52.9 1.0 42 653-694 11-53 (57)
79 KOG2660 Locus-specific chromos 96.3 0.001 2.2E-08 70.8 0.2 49 652-702 14-63 (331)
80 PF12861 zf-Apc11: Anaphase-pr 96.3 0.0033 7.1E-08 54.4 3.1 33 669-701 50-83 (85)
81 KOG0328 Predicted ATP-dependen 96.2 0.016 3.5E-07 60.8 7.9 79 725-807 252-330 (400)
82 KOG4159 Predicted E3 ubiquitin 96.2 0.0022 4.7E-08 71.7 1.7 48 652-701 83-130 (398)
83 KOG2879 Predicted E3 ubiquitin 96.2 0.0027 5.8E-08 65.9 2.1 50 651-700 237-287 (298)
84 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0028 6.2E-08 67.9 2.2 48 650-699 284-344 (491)
85 KOG4692 Predicted E3 ubiquitin 96.1 0.0025 5.3E-08 67.8 1.7 49 651-701 420-468 (489)
86 PRK10590 ATP-dependent RNA hel 96.1 0.025 5.4E-07 65.5 10.0 79 725-807 231-309 (456)
87 PLN00206 DEAD-box ATP-dependen 96.0 0.019 4.1E-07 67.6 8.9 82 724-807 350-432 (518)
88 TIGR00614 recQ_fam ATP-depende 96.0 0.028 6E-07 65.4 10.1 80 725-807 211-290 (470)
89 KOG1785 Tyrosine kinase negati 96.0 0.0026 5.5E-08 68.7 1.4 52 654-705 370-421 (563)
90 TIGR01389 recQ ATP-dependent D 96.0 0.023 5E-07 68.1 9.6 80 724-807 209-288 (591)
91 PRK13107 preprotein translocas 96.0 0.024 5.3E-07 69.0 9.3 81 723-807 431-511 (908)
92 PRK13104 secA preprotein trans 95.9 0.029 6.3E-07 68.5 9.7 81 723-807 426-506 (896)
93 COG5152 Uncharacterized conser 95.9 0.0031 6.6E-08 62.1 1.1 44 654-699 197-240 (259)
94 KOG0802 E3 ubiquitin ligase [P 95.9 0.0027 5.9E-08 74.9 0.8 50 652-703 290-344 (543)
95 TIGR00631 uvrb excinuclease AB 95.9 0.036 7.7E-07 66.8 10.2 83 723-807 424-506 (655)
96 TIGR03714 secA2 accessory Sec 95.8 0.033 7.2E-07 67.2 9.7 81 723-807 406-486 (762)
97 PRK11634 ATP-dependent RNA hel 95.8 0.033 7.2E-07 66.9 9.8 81 723-807 229-309 (629)
98 PRK11057 ATP-dependent DNA hel 95.8 0.035 7.6E-07 66.7 9.8 79 725-807 222-300 (607)
99 PRK12898 secA preprotein trans 95.8 0.033 7E-07 66.4 9.3 81 723-807 455-535 (656)
100 PRK05298 excinuclease ABC subu 95.8 0.037 8.1E-07 66.9 9.8 83 724-808 429-511 (652)
101 KOG1813 Predicted E3 ubiquitin 95.6 0.0046 9.9E-08 64.9 1.3 45 654-700 242-286 (313)
102 PRK09200 preprotein translocas 95.6 0.042 9.2E-07 66.9 9.5 81 723-807 410-490 (790)
103 KOG4628 Predicted E3 ubiquitin 95.6 0.0062 1.3E-07 66.4 2.1 53 654-707 230-285 (348)
104 TIGR02621 cas3_GSU0051 CRISPR- 95.5 0.046 9.9E-07 66.8 9.3 81 725-807 255-350 (844)
105 PTZ00424 helicase 45; Provisio 95.5 0.062 1.3E-06 60.9 9.9 79 725-807 253-331 (401)
106 PF04851 ResIII: Type III rest 95.4 0.0097 2.1E-07 59.0 2.6 44 400-445 26-70 (184)
107 TIGR00963 secA preprotein tran 95.4 0.071 1.5E-06 64.2 10.2 81 723-807 387-467 (745)
108 KOG0341 DEAD-box protein abstr 95.4 0.04 8.7E-07 60.0 7.2 81 722-807 405-485 (610)
109 KOG0348 ATP-dependent RNA heli 95.3 0.049 1.1E-06 61.8 7.9 82 724-807 406-511 (708)
110 KOG0334 RNA helicase [RNA proc 95.2 0.038 8.2E-07 67.3 7.3 82 723-807 596-677 (997)
111 PRK12904 preprotein translocas 95.2 0.082 1.8E-06 64.5 10.0 81 723-807 412-492 (830)
112 TIGR01587 cas3_core CRISPR-ass 95.2 0.096 2.1E-06 58.5 10.1 80 725-807 207-292 (358)
113 KOG1039 Predicted E3 ubiquitin 95.2 0.0096 2.1E-07 65.3 1.9 51 650-700 158-221 (344)
114 PRK12900 secA preprotein trans 95.1 0.084 1.8E-06 64.9 9.9 80 723-806 580-659 (1025)
115 PF14570 zf-RING_4: RING/Ubox 95.1 0.016 3.4E-07 44.8 2.3 43 656-699 1-47 (48)
116 KOG0828 Predicted E3 ubiquitin 95.0 0.011 2.4E-07 65.6 1.8 47 653-700 571-634 (636)
117 KOG0340 ATP-dependent RNA heli 95.0 0.082 1.8E-06 57.4 8.1 83 723-807 235-318 (442)
118 KOG0332 ATP-dependent RNA heli 94.9 0.091 2E-06 57.3 8.3 81 723-807 314-394 (477)
119 KOG0297 TNF receptor-associate 94.6 0.019 4.1E-07 64.9 2.5 53 652-706 20-73 (391)
120 PLN03137 ATP-dependent DNA hel 94.6 0.097 2.1E-06 65.5 8.7 77 728-807 668-744 (1195)
121 PRK12906 secA preprotein trans 94.6 0.12 2.6E-06 62.7 9.2 81 723-807 422-502 (796)
122 KOG1734 Predicted RING-contain 94.5 0.012 2.5E-07 60.9 0.3 61 651-711 222-292 (328)
123 KOG0342 ATP-dependent RNA heli 93.9 0.11 2.3E-06 58.7 6.2 81 724-807 314-394 (543)
124 KOG4445 Uncharacterized conser 93.8 0.073 1.6E-06 56.0 4.5 50 653-702 115-188 (368)
125 COG5222 Uncharacterized conser 93.8 0.034 7.4E-07 58.1 2.0 43 654-697 275-318 (427)
126 KOG0345 ATP-dependent RNA heli 93.7 0.17 3.7E-06 56.8 7.5 81 723-807 239-321 (567)
127 KOG1571 Predicted E3 ubiquitin 93.5 0.022 4.8E-07 61.7 0.1 42 654-700 306-347 (355)
128 KOG3039 Uncharacterized conser 93.5 0.051 1.1E-06 55.6 2.6 57 652-710 220-280 (303)
129 TIGR03817 DECH_helic helicase/ 93.5 0.18 3.9E-06 62.0 7.9 72 734-807 264-343 (742)
130 KOG0339 ATP-dependent RNA heli 93.3 0.2 4.2E-06 56.8 7.1 82 723-807 451-532 (731)
131 KOG1493 Anaphase-promoting com 93.3 0.039 8.5E-07 46.2 1.2 46 655-700 33-81 (84)
132 smart00487 DEXDc DEAD-like hel 93.2 0.11 2.3E-06 51.5 4.5 35 400-434 25-62 (201)
133 COG5219 Uncharacterized conser 93.1 0.042 9.1E-07 65.4 1.7 50 651-700 1467-1523(1525)
134 KOG0336 ATP-dependent RNA heli 93.1 0.17 3.7E-06 55.7 6.1 82 723-807 448-529 (629)
135 KOG0335 ATP-dependent RNA heli 93.0 0.22 4.7E-06 56.8 7.0 84 722-807 311-401 (482)
136 KOG4739 Uncharacterized protei 92.9 0.043 9.3E-07 56.6 1.2 46 655-704 5-52 (233)
137 TIGR00580 mfd transcription-re 92.7 0.37 8E-06 60.4 9.1 67 739-807 658-726 (926)
138 KOG0347 RNA helicase [RNA proc 92.7 0.14 3.1E-06 58.4 4.9 65 741-807 463-527 (731)
139 PRK13767 ATP-dependent helicas 92.6 0.41 8.9E-06 60.0 9.5 78 728-807 271-354 (876)
140 PF13872 AAA_34: P-loop contai 92.6 0.13 2.9E-06 55.3 4.4 101 448-559 177-302 (303)
141 KOG0343 RNA Helicase [RNA proc 92.5 0.39 8.4E-06 55.1 8.0 81 723-807 297-379 (758)
142 KOG0804 Cytoplasmic Zn-finger 92.4 0.057 1.2E-06 59.9 1.4 46 651-700 173-222 (493)
143 KOG4275 Predicted E3 ubiquitin 92.2 0.026 5.7E-07 59.0 -1.4 41 654-700 301-342 (350)
144 PRK10917 ATP-dependent DNA hel 92.2 0.55 1.2E-05 57.2 9.7 81 725-807 455-545 (681)
145 PF04641 Rtf2: Rtf2 RING-finge 92.1 0.11 2.4E-06 55.5 3.1 55 652-709 112-170 (260)
146 PF14447 Prok-RING_4: Prokaryo 91.4 0.1 2.3E-06 41.3 1.4 47 654-704 8-54 (55)
147 PF11793 FANCL_C: FANCL C-term 91.2 0.057 1.2E-06 45.6 -0.1 48 654-701 3-67 (70)
148 KOG0825 PHD Zn-finger protein 91.2 0.057 1.2E-06 63.3 -0.3 51 652-704 122-175 (1134)
149 KOG1941 Acetylcholine receptor 91.0 0.078 1.7E-06 57.6 0.5 50 651-700 363-416 (518)
150 TIGR00643 recG ATP-dependent D 90.9 0.83 1.8E-05 55.2 9.2 78 728-807 435-522 (630)
151 KOG0826 Predicted E3 ubiquitin 90.6 0.095 2E-06 56.0 0.7 54 651-706 298-352 (357)
152 PRK10689 transcription-repair 90.4 0.85 1.8E-05 58.5 9.0 72 733-807 802-875 (1147)
153 smart00744 RINGv The RING-vari 90.3 0.19 4.2E-06 39.2 2.1 42 655-696 1-49 (49)
154 KOG0326 ATP-dependent RNA heli 90.3 0.29 6.2E-06 52.5 4.0 76 721-799 304-379 (459)
155 KOG3039 Uncharacterized conser 90.2 0.13 2.7E-06 52.8 1.1 31 654-684 44-74 (303)
156 KOG1814 Predicted E3 ubiquitin 90.0 0.17 3.8E-06 55.7 2.2 44 653-696 184-236 (445)
157 PF00627 UBA: UBA/TS-N domain; 90.0 0.31 6.8E-06 35.5 2.8 36 5-43 1-36 (37)
158 cd00046 DEXDc DEAD-like helica 89.8 0.12 2.6E-06 47.9 0.6 41 401-441 2-45 (144)
159 PRK09401 reverse gyrase; Revie 89.7 0.71 1.5E-05 59.4 7.6 74 725-807 315-394 (1176)
160 KOG0327 Translation initiation 89.6 0.87 1.9E-05 50.2 7.1 73 725-802 251-323 (397)
161 TIGR01054 rgy reverse gyrase. 89.6 1 2.3E-05 57.9 9.0 74 726-807 314-393 (1171)
162 KOG0338 ATP-dependent RNA heli 89.3 0.7 1.5E-05 52.6 6.1 76 728-807 415-490 (691)
163 TIGR03158 cas3_cyano CRISPR-as 89.2 1.1 2.3E-05 50.3 7.8 60 740-807 271-332 (357)
164 COG5175 MOT2 Transcriptional r 89.2 0.22 4.7E-06 53.3 2.0 53 654-707 15-71 (480)
165 KOG1645 RING-finger-containing 88.8 0.16 3.5E-06 55.8 0.8 54 653-706 4-62 (463)
166 cd00194 UBA Ubiquitin Associat 88.7 0.48 1E-05 34.6 3.0 27 20-46 12-38 (38)
167 PF05290 Baculo_IE-1: Baculovi 88.3 0.31 6.8E-06 45.6 2.2 51 652-702 79-134 (140)
168 COG5236 Uncharacterized conser 88.3 0.18 3.9E-06 54.0 0.8 50 650-699 58-107 (493)
169 TIGR01970 DEAH_box_HrpB ATP-de 88.0 1.6 3.6E-05 54.1 8.8 65 741-807 209-276 (819)
170 COG0514 RecQ Superfamily II DN 87.7 2.2 4.8E-05 50.4 9.2 65 741-807 230-294 (590)
171 smart00165 UBA Ubiquitin assoc 87.3 0.68 1.5E-05 33.6 3.1 26 20-45 12-37 (37)
172 KOG0827 Predicted E3 ubiquitin 87.2 0.31 6.6E-06 53.2 1.7 52 654-705 5-61 (465)
173 PF02845 CUE: CUE domain; Int 86.6 0.86 1.9E-05 34.2 3.4 40 7-47 2-41 (42)
174 PRK09694 helicase Cas3; Provis 85.8 3.3 7.2E-05 51.7 9.9 79 729-807 548-635 (878)
175 PRK11664 ATP-dependent RNA hel 85.7 2.3 5E-05 52.8 8.5 66 740-807 211-279 (812)
176 KOG3800 Predicted E3 ubiquitin 85.4 0.53 1.2E-05 49.8 2.3 48 655-703 2-54 (300)
177 KOG4284 DEAD box protein [Tran 84.7 1.3 2.7E-05 51.9 5.1 78 726-807 259-336 (980)
178 COG5220 TFB3 Cdk activating ki 84.2 0.27 5.8E-06 50.2 -0.5 50 653-703 10-67 (314)
179 PF05883 Baculo_RING: Baculovi 84.0 0.68 1.5E-05 43.8 2.1 48 637-684 10-66 (134)
180 KOG4362 Transcriptional regula 83.9 0.4 8.6E-06 56.8 0.7 54 653-706 21-75 (684)
181 KOG4367 Predicted Zn-finger pr 83.9 0.66 1.4E-05 51.2 2.3 35 652-686 3-37 (699)
182 PRK02362 ski2-like helicase; P 82.8 3.5 7.6E-05 50.9 8.3 67 739-807 241-343 (737)
183 COG1202 Superfamily II helicas 81.3 4.5 9.7E-05 47.1 7.6 83 723-807 416-504 (830)
184 PF07800 DUF1644: Protein of u 80.8 1.2 2.6E-05 43.2 2.5 20 653-672 2-21 (162)
185 smart00546 CUE Domain that may 80.6 2.6 5.7E-05 31.7 3.9 40 7-47 3-42 (43)
186 PRK11448 hsdR type I restricti 80.1 2.2 4.8E-05 54.7 5.3 64 741-807 698-770 (1123)
187 KOG0953 Mitochondrial RNA heli 79.4 5.4 0.00012 46.2 7.5 75 729-807 347-423 (700)
188 PRK11131 ATP-dependent RNA hel 79.0 6.4 0.00014 50.9 8.8 79 725-807 269-351 (1294)
189 KOG0350 DEAD-box ATP-dependent 78.4 4.5 9.8E-05 46.3 6.4 78 726-807 416-497 (620)
190 COG4096 HsdR Type I site-speci 78.1 3 6.5E-05 50.5 5.2 77 305-426 136-212 (875)
191 PRK09751 putative ATP-dependen 77.8 6.6 0.00014 51.6 8.6 66 740-807 243-341 (1490)
192 PRK00254 ski2-like helicase; P 77.4 6.5 0.00014 48.4 8.2 74 732-807 229-335 (720)
193 PHA02653 RNA helicase NPH-II; 77.4 9.5 0.00021 46.4 9.3 75 730-807 383-460 (675)
194 PRK01172 ski2-like helicase; P 77.4 8 0.00017 47.2 8.9 75 731-807 226-325 (674)
195 KOG3002 Zn finger protein [Gen 77.1 1.4 3.1E-05 47.8 2.0 43 652-700 47-91 (299)
196 KOG0346 RNA helicase [RNA proc 76.1 3.7 8E-05 46.2 4.8 75 724-800 252-326 (569)
197 COG1201 Lhr Lhr-like helicases 75.9 10 0.00022 46.7 9.1 72 728-800 240-312 (814)
198 PHA03096 p28-like protein; Pro 75.1 1.4 3.1E-05 47.5 1.3 46 654-699 179-233 (284)
199 PRK14701 reverse gyrase; Provi 74.9 5.6 0.00012 53.0 6.9 71 728-807 320-396 (1638)
200 KOG2932 E3 ubiquitin ligase in 74.2 1.5 3.2E-05 46.7 1.2 42 655-700 92-134 (389)
201 COG5194 APC11 Component of SCF 74.1 1.9 4.1E-05 36.8 1.6 30 670-701 53-82 (88)
202 KOG1812 Predicted E3 ubiquitin 73.7 1.7 3.6E-05 49.2 1.5 52 653-704 146-207 (384)
203 KOG0349 Putative DEAD-box RNA 73.2 6.6 0.00014 44.0 5.8 65 741-807 505-572 (725)
204 cd00268 DEADc DEAD-box helicas 73.2 3.7 8.1E-05 41.5 3.9 18 401-418 38-55 (203)
205 TIGR01967 DEAH_box_HrpA ATP-de 73.1 8.8 0.00019 49.7 7.8 79 725-807 262-344 (1283)
206 KOG1100 Predicted E3 ubiquitin 72.3 1.9 4E-05 44.5 1.4 40 656-701 161-201 (207)
207 KOG0351 ATP-dependent DNA heli 71.9 6.7 0.00015 49.2 6.3 78 728-807 470-549 (941)
208 KOG2114 Vacuolar assembly/sort 71.0 3.4 7.4E-05 49.8 3.3 39 654-697 841-880 (933)
209 KOG0337 ATP-dependent RNA heli 70.1 8.6 0.00019 43.2 5.9 83 722-807 243-325 (529)
210 PF11547 E3_UbLigase_EDD: E3 u 69.2 7.1 0.00015 30.0 3.5 43 3-46 6-48 (53)
211 KOG4185 Predicted E3 ubiquitin 68.3 2.9 6.3E-05 45.5 1.9 45 654-699 4-54 (296)
212 PF08746 zf-RING-like: RING-li 68.2 3.8 8.3E-05 31.0 2.0 25 671-695 19-43 (43)
213 PF00397 WW: WW domain; Inter 67.3 7.8 0.00017 27.0 3.3 29 364-393 3-31 (31)
214 COG4098 comFA Superfamily II D 65.0 16 0.00034 40.2 6.5 128 654-781 40-186 (441)
215 KOG2817 Predicted E3 ubiquitin 64.8 3.7 8E-05 45.6 1.8 49 653-701 334-386 (394)
216 KOG3579 Predicted E3 ubiquitin 64.6 2.7 5.8E-05 44.3 0.7 35 653-687 268-306 (352)
217 TIGR00365 monothiol glutaredox 63.9 37 0.0008 30.4 7.9 64 741-804 11-80 (97)
218 KOG0344 ATP-dependent RNA heli 63.6 29 0.00062 40.8 8.6 80 723-806 371-451 (593)
219 cd03028 GRX_PICOT_like Glutare 62.8 29 0.00062 30.5 6.9 64 741-804 7-76 (90)
220 PRK11448 hsdR type I restricti 62.4 29 0.00063 44.8 9.4 25 400-424 434-458 (1123)
221 PF08938 HBS1_N: HBS1 N-termin 61.9 5 0.00011 34.6 1.8 38 10-47 32-70 (79)
222 TIGR00595 priA primosomal prot 61.6 18 0.00039 42.6 6.9 51 754-806 271-325 (505)
223 PRK05580 primosome assembly pr 61.1 14 0.00029 45.3 5.9 51 755-807 440-494 (679)
224 KOG2034 Vacuolar sorting prote 58.7 4.3 9.2E-05 49.4 1.0 35 651-685 815-851 (911)
225 KOG3970 Predicted E3 ubiquitin 57.5 14 0.00029 37.9 4.1 49 652-700 49-105 (299)
226 PHA02825 LAP/PHD finger-like p 56.8 8.6 0.00019 37.5 2.6 53 652-705 7-64 (162)
227 TIGR00596 rad1 DNA repair prot 55.5 1.1E+02 0.0023 38.4 12.2 63 507-575 78-148 (814)
228 COG1203 CRISPR-associated heli 55.4 2.5E+02 0.0055 34.8 15.6 71 732-803 431-504 (733)
229 KOG4718 Non-SMC (structural ma 54.2 96 0.0021 31.8 9.4 57 639-697 167-224 (235)
230 PRK05580 primosome assembly pr 53.8 56 0.0012 40.0 9.5 76 723-799 172-248 (679)
231 PRK12903 secA preprotein trans 53.6 55 0.0012 40.7 9.1 80 723-806 408-487 (925)
232 KOG3161 Predicted E3 ubiquitin 53.5 6.2 0.00014 46.1 1.2 36 654-693 12-51 (861)
233 TIGR00595 priA primosomal prot 52.5 72 0.0016 37.6 9.9 76 722-798 6-82 (505)
234 PHA02862 5L protein; Provision 52.3 9 0.0002 36.7 1.9 51 654-705 3-58 (156)
235 PF07191 zinc-ribbons_6: zinc- 52.1 3.2 7E-05 34.8 -1.0 41 654-701 2-42 (70)
236 COG1200 RecG RecG-like helicas 51.6 64 0.0014 38.8 9.0 77 723-800 455-541 (677)
237 PRK12326 preprotein translocas 51.1 64 0.0014 39.4 9.1 80 723-806 409-488 (764)
238 KOG3268 Predicted E3 ubiquitin 49.4 9.1 0.0002 37.7 1.4 50 652-701 164-229 (234)
239 COG0556 UvrB Helicase subunit 47.4 85 0.0019 36.8 8.8 68 724-791 429-496 (663)
240 KOG1815 Predicted E3 ubiquitin 47.2 16 0.00035 42.3 3.3 57 650-706 67-132 (444)
241 cd03418 GRX_GRXb_1_3_like Glut 46.5 81 0.0018 25.9 6.8 56 743-798 1-58 (75)
242 PF10367 Vps39_2: Vacuolar sor 45.3 9.7 0.00021 34.3 0.9 31 651-681 76-108 (109)
243 KOG2789 Putative Zn-finger pro 45.0 17 0.00038 40.2 2.9 55 654-708 75-153 (482)
244 PF10272 Tmpp129: Putative tra 44.7 16 0.00034 40.8 2.6 35 670-704 310-355 (358)
245 KOG0289 mRNA splicing factor [ 44.6 26 0.00057 39.5 4.2 76 655-736 2-78 (506)
246 PRK10689 transcription-repair 44.4 42 0.0009 43.6 6.6 39 400-438 622-661 (1147)
247 KOG1428 Inhibitor of type V ad 44.3 14 0.0003 47.0 2.2 52 651-702 3484-3546(3738)
248 TIGR00348 hsdR type I site-spe 43.8 20 0.00044 43.7 3.6 53 331-423 235-287 (667)
249 PTZ00424 helicase 45; Provisio 43.5 28 0.00061 39.2 4.6 16 334-349 50-65 (401)
250 PRK01172 ski2-like helicase; P 43.1 23 0.00049 43.3 3.9 35 401-435 39-74 (674)
251 PF12340 DUF3638: Protein of u 42.6 1.9E+02 0.0042 30.3 10.0 27 401-427 43-69 (229)
252 PF00270 DEAD: DEAD/DEAH box h 42.6 26 0.00057 33.8 3.6 34 402-435 17-53 (169)
253 PRK10824 glutaredoxin-4; Provi 42.6 1E+02 0.0022 28.7 7.2 64 741-805 14-84 (115)
254 COG1110 Reverse gyrase [DNA re 42.4 1.3E+02 0.0028 38.1 9.7 97 690-800 9-189 (1187)
255 smart00456 WW Domain with 2 co 41.7 32 0.0007 23.7 3.0 29 364-394 3-31 (32)
256 KOG1364 Predicted ubiquitin re 41.5 24 0.00053 38.7 3.3 42 7-49 7-48 (356)
257 PRK15483 type III restriction- 41.0 33 0.00072 43.2 4.8 83 336-435 8-98 (986)
258 COG0626 MetC Cystathionine bet 40.5 1.5E+02 0.0033 33.7 9.6 63 723-785 84-147 (396)
259 KOG3899 Uncharacterized conser 40.3 14 0.00031 39.2 1.3 37 670-706 324-371 (381)
260 PF12906 RINGv: RING-variant d 40.2 8.9 0.00019 29.6 -0.1 40 656-695 1-47 (47)
261 PF02891 zf-MIZ: MIZ/SP-RING z 40.0 10 0.00023 29.7 0.2 45 654-698 3-50 (50)
262 KOG3842 Adaptor protein Pellin 39.9 21 0.00045 38.4 2.5 49 653-702 341-416 (429)
263 COG5183 SSM4 Protein involved 39.4 22 0.00048 42.8 2.8 57 652-708 11-74 (1175)
264 TIGR01407 dinG_rel DnaQ family 38.3 95 0.0021 39.1 8.4 75 728-807 660-739 (850)
265 PF06972 DUF1296: Protein of u 37.8 50 0.0011 26.8 3.7 42 8-50 7-48 (60)
266 KOG2068 MOT2 transcription fac 36.5 28 0.00062 38.0 2.9 47 653-701 249-299 (327)
267 COG1205 Distinct helicase fami 36.4 88 0.0019 39.4 7.5 82 725-808 290-379 (851)
268 PLN02436 cellulose synthase A 36.2 19 0.00042 45.2 1.7 50 651-701 34-90 (1094)
269 TIGR00615 recR recombination p 36.1 2.4E+02 0.0052 28.8 9.3 87 689-777 65-175 (195)
270 PLN02189 cellulose synthase 36.0 21 0.00045 44.9 2.0 50 651-701 32-88 (1040)
271 PF05605 zf-Di19: Drought indu 35.8 25 0.00055 27.8 1.8 38 654-698 3-40 (54)
272 PRK12902 secA preprotein trans 34.7 1.6E+02 0.0034 37.0 9.0 81 723-806 421-502 (939)
273 KOG1940 Zn-finger protein [Gen 34.6 19 0.0004 38.7 1.1 46 654-701 159-208 (276)
274 PTZ00062 glutaredoxin; Provisi 33.8 1.8E+02 0.0038 30.0 8.1 77 729-807 101-184 (204)
275 PLN02248 cellulose synthase-li 33.4 26 0.00056 44.3 2.3 34 669-704 148-181 (1135)
276 PRK14873 primosome assembly pr 33.4 1.8E+02 0.004 35.5 9.4 78 723-802 170-249 (665)
277 cd00201 WW Two conserved trypt 31.7 54 0.0012 22.2 2.8 28 365-394 3-30 (31)
278 PRK10917 ATP-dependent DNA hel 31.4 1.9E+02 0.0041 35.5 9.3 76 723-799 292-371 (681)
279 TIGR03714 secA2 accessory Sec 31.4 51 0.0011 40.6 4.2 37 400-436 84-121 (762)
280 PF06906 DUF1272: Protein of u 30.8 45 0.00098 26.8 2.4 44 654-701 6-53 (57)
281 PF13086 AAA_11: AAA domain; P 30.3 55 0.0012 33.1 3.9 52 334-435 1-62 (236)
282 COG3813 Uncharacterized protei 30.0 34 0.00074 28.7 1.7 44 655-702 7-54 (84)
283 CHL00122 secA preprotein trans 30.0 2E+02 0.0044 36.0 8.9 81 723-806 406-487 (870)
284 PRK13103 secA preprotein trans 29.4 1.2E+02 0.0027 37.9 7.0 80 723-806 431-510 (913)
285 PRK00254 ski2-like helicase; P 28.4 59 0.0013 40.1 4.2 35 401-435 41-77 (720)
286 PLN02638 cellulose synthase A 28.3 31 0.00067 43.6 1.7 48 652-700 16-70 (1079)
287 PLN02400 cellulose synthase 27.8 34 0.00073 43.3 1.9 50 651-701 34-90 (1085)
288 PRK13844 recombination protein 27.6 1.7E+02 0.0037 30.1 6.5 86 689-777 69-178 (200)
289 PF14569 zf-UDP: Zinc-binding 27.6 34 0.00074 29.3 1.3 50 651-701 7-63 (80)
290 cd03031 GRX_GRX_like Glutaredo 27.5 2E+02 0.0043 28.0 6.8 62 743-804 1-73 (147)
291 PRK12899 secA preprotein trans 27.4 2.2E+02 0.0047 36.1 8.6 79 723-806 550-629 (970)
292 KOG2979 Protein involved in DN 26.7 1.4E+02 0.0031 31.6 5.9 42 653-694 176-218 (262)
293 PLN02195 cellulose synthase A 26.1 41 0.00089 42.1 2.2 47 654-701 7-60 (977)
294 KOG1952 Transcription factor N 26.0 57 0.0012 39.9 3.3 59 637-696 176-243 (950)
295 COG1197 Mfd Transcription-repa 26.0 46 0.00099 42.4 2.6 82 403-488 619-757 (1139)
296 COG1198 PriA Primosomal protei 25.9 1.5E+02 0.0032 36.6 6.8 34 765-799 506-541 (730)
297 PRK02362 ski2-like helicase; P 25.8 76 0.0016 39.3 4.5 35 401-435 41-76 (737)
298 PF03474 DMA: DMRTA motif; In 25.4 91 0.002 23.2 3.0 17 29-45 23-39 (39)
299 PRK11776 ATP-dependent RNA hel 25.3 84 0.0018 36.4 4.5 36 401-436 43-82 (460)
300 PRK14339 (dimethylallyl)adenos 24.9 1.8E+02 0.004 33.3 7.1 83 724-806 155-253 (420)
301 PF07975 C1_4: TFIIH C1-like d 24.8 51 0.0011 26.1 1.8 25 670-696 26-50 (51)
302 PRK00076 recR recombination pr 24.5 5.3E+02 0.012 26.4 9.5 86 689-777 65-174 (196)
303 KOG3259 Peptidyl-prolyl cis-tr 24.4 57 0.0012 31.4 2.3 41 360-401 5-45 (163)
304 cd06533 Glyco_transf_WecG_TagA 24.4 4.7E+02 0.01 25.8 9.1 74 728-802 33-109 (171)
305 PF03854 zf-P11: P-11 zinc fin 24.4 29 0.00063 26.9 0.3 33 667-701 14-47 (50)
306 COG0353 RecR Recombinational D 23.8 2E+02 0.0044 29.3 6.2 51 724-777 121-176 (198)
307 PF07295 DUF1451: Protein of u 23.2 4.4E+02 0.0095 25.7 8.3 27 548-574 32-58 (146)
308 PRK14338 (dimethylallyl)adenos 23.2 2.2E+02 0.0049 33.0 7.5 81 724-804 183-276 (459)
309 COG2179 Predicted hydrolase of 23.1 3.2E+02 0.007 27.3 7.2 67 728-796 49-115 (175)
310 KOG2231 Predicted E3 ubiquitin 22.9 49 0.0011 39.8 2.0 46 655-700 2-52 (669)
311 PRK10638 glutaredoxin 3; Provi 22.8 3.2E+02 0.0068 23.2 6.7 44 743-786 3-47 (83)
312 PRK12901 secA preprotein trans 22.5 1.9E+02 0.0042 36.8 6.9 79 723-806 610-689 (1112)
313 COG5109 Uncharacterized conser 22.3 48 0.001 35.8 1.6 50 654-703 337-390 (396)
314 TIGR00601 rad23 UV excision re 21.9 78 0.0017 35.8 3.2 42 6-47 153-194 (378)
315 PF03808 Glyco_tran_WecB: Glyc 21.6 5.1E+02 0.011 25.6 8.8 75 728-803 35-112 (172)
316 PF12773 DZR: Double zinc ribb 21.3 89 0.0019 24.0 2.6 31 673-703 12-43 (50)
317 COG2247 LytB Putative cell wal 21.3 2.7E+02 0.006 30.6 7.0 60 740-799 75-139 (337)
318 cd03027 GRX_DEP Glutaredoxin ( 21.2 4.4E+02 0.0095 21.6 7.0 55 743-797 2-57 (73)
319 TIGR00643 recG ATP-dependent D 21.1 3.6E+02 0.0078 32.7 9.0 75 723-798 266-344 (630)
320 cd01520 RHOD_YbbB Member of th 21.0 1.8E+02 0.0038 27.2 5.1 52 725-776 69-122 (128)
321 COG1198 PriA Primosomal protei 21.0 2.4E+02 0.0052 34.8 7.3 77 722-799 226-303 (730)
322 TIGR00376 DNA helicase, putati 20.8 1.9E+02 0.0041 35.2 6.4 54 722-775 182-235 (637)
323 cd00268 DEADc DEAD-box helicas 20.4 5.2E+02 0.011 25.6 8.8 72 723-799 46-126 (203)
324 PRK11032 hypothetical protein; 20.2 6.6E+02 0.014 24.9 8.8 27 548-574 42-68 (160)
325 PLN02915 cellulose synthase A 20.1 57 0.0012 41.2 1.8 48 653-701 15-69 (1044)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-63 Score=531.73 Aligned_cols=399 Identities=32% Similarity=0.512 Sum_probs=334.8
Q ss_pred CccCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccC
Q 003540 322 IEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARG 401 (812)
Q Consensus 322 l~~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~G 401 (812)
...++||..+...|.|||++||+|+...|.. ...|
T Consensus 172 ~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~S---------------------------------------------s~~G 206 (791)
T KOG1002|consen 172 AERAEQPDDLIIPLLPFQKEGLAWLTSQEES---------------------------------------------SVAG 206 (791)
T ss_pred hhcccCcccceecchhhhHHHHHHHHHhhhh---------------------------------------------hhcc
Confidence 3457999999999999999999999998762 3679
Q ss_pred ceeecCCCChhHHHHHHHHHhcccCCCCcccccCCCCCCCCccccc----------------------------------
Q 003540 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYD---------------------------------- 447 (812)
Q Consensus 402 GILADEMGLGKTIq~iaLI~~~~~~~~~l~v~p~s~~~~w~~e~~~---------------------------------- 447 (812)
||||||||+|||||+|||+++.....++++++|...+.+|.+|+..
T Consensus 207 GiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~R~~nikel~~YDvVLTty~ 286 (791)
T KOG1002|consen 207 GILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYDVVLTTYA 286 (791)
T ss_pred ceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecccccCCHHHhhcCcEEEEecH
Confidence 9999999999999999999998888899999999999999888632
Q ss_pred ----------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeeccc----chh
Q 003540 448 ----------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPM----TLL 489 (812)
Q Consensus 448 ----------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~----sll 489 (812)
++||+|.++.+.+......-.+.+.++|+++|||+.+.. +|+
T Consensus 287 vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLi 366 (791)
T KOG1002|consen 287 VVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLI 366 (791)
T ss_pred HHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHH
Confidence 788999999888777666667788899999999984321 111
Q ss_pred ------------------------------------------HHhhhhhcCCcccC-----CHHHHHHHHHHhhhhhhhc
Q 003540 490 ------------------------------------------GQWNKLIQKPYEEG-----DERGLKLVQSILKPIMLRR 522 (812)
Q Consensus 490 ------------------------------------------~qW~~~i~~P~e~~-----~~~~~~~L~~iL~p~~LRR 522 (812)
-.|+.+..+|+..- ...++...+.+|.-+||||
T Consensus 367 RFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~Imlrr 446 (791)
T KOG1002|consen 367 RFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRR 446 (791)
T ss_pred HHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 12366677777642 2477889999999999999
Q ss_pred cccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccc
Q 003540 523 TKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602 (812)
Q Consensus 523 tK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~ 602 (812)
||-....| +.|||+.+.+..=-|+.+|.++|+.++...++.|+.+++.|.++.||.+||.+|+||||+..||+|+.
T Consensus 447 Tkl~RAdD----LgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl 522 (791)
T KOG1002|consen 447 TKLERADD----LGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVL 522 (791)
T ss_pred hhcccccc----cCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceee
Confidence 99888777 77999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhh
Q 003540 603 SRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLG 682 (812)
Q Consensus 603 ~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~ 682 (812)
..... .+ .. .+....+|.+|.++.++.+.+.|.|.||+-|+.+
T Consensus 523 ~S~~~-----------n~--------~~------------------enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~e 565 (791)
T KOG1002|consen 523 YSANA-----------NL--------PD------------------ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKE 565 (791)
T ss_pred ehhhc-----------CC--------Cc------------------cccCceeecccCChhhhhHhhhhhHHHHHHHHHH
Confidence 32000 00 00 0123468999999999999999999999999999
Q ss_pred hhcC---CCCCCCCCCCccccccccccCCCC---Ccc-------ccccccccccchhHHHHHHHHHHHccC--CCeEEEE
Q 003540 683 SWKT---PTSGLCPVCRKTISRQDLITAPTG---SRF-------QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILF 747 (812)
Q Consensus 683 ~~~~---~~~~~CP~Cr~~i~~~~l~~~~~~---~~~-------~~~~~~~~~~SsKl~aLl~~L~~l~~~--~~KvVVF 747 (812)
|+.. .....||.|..+++.+.--..... ..| +++. +.|..|+||+||++.|.-+++. .-|.|||
T Consensus 566 yv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm-~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVF 644 (791)
T KOG1002|consen 566 YVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINM-DDWQSSTKIEALVEELYFLRERDRTAKSIVF 644 (791)
T ss_pred HHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcch-hhhcchhHHHHHHHHHHHHHHcccchhhhhH
Confidence 8853 335899999999887621111110 011 1222 3789999999999999988766 6799999
Q ss_pred cCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 748 SQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 748 SQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
||||+|||+|+-.|.+.|+..+.++|+|++++|.+.|+.|.++++|+|||+|++|||+.|
T Consensus 645 SQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 645 SQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred HHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEe
Confidence 999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3e-56 Score=497.83 Aligned_cols=318 Identities=29% Similarity=0.455 Sum_probs=271.3
Q ss_pred CCcccc-cCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCceee
Q 003540 327 PPSTLK-CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405 (812)
Q Consensus 327 ~p~~l~-~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGILA 405 (812)
.|..++ ..||+||.+||.||..+.. .+.+||||
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~e----------------------------------------------ngingILa 192 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYE----------------------------------------------NGINGILA 192 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHh----------------------------------------------cCcccEee
Confidence 677888 9999999999999998732 35689999
Q ss_pred cCCCChhHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccc----------------------------------
Q 003540 406 DAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYD---------------------------------- 447 (812)
Q Consensus 406 DEMGLGKTIq~iaLI~~~~~----~~~~l~v~p~s~~~~w~~e~~~---------------------------------- 447 (812)
||||||||+|+||++.+... ++|.+++||.|++.||.+|+..
T Consensus 193 DEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~i 272 (971)
T KOG0385|consen 193 DEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCI 272 (971)
T ss_pred hhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEe
Confidence 99999999999999987665 6789999999999999998744
Q ss_pred ---------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh--------------
Q 003540 448 ---------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW-------------- 492 (812)
Q Consensus 448 ---------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW-------------- 492 (812)
++||+|+++|..++++...+.+...+++++||||+ +++|-+.|
T Consensus 273 TsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPL--QNNL~ELWaLLnFllPdiF~~~ 350 (971)
T KOG0385|consen 273 TSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPL--QNNLHELWALLNFLLPDIFNSA 350 (971)
T ss_pred ehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcc--cccHHHHHHHHHhhchhhccCH
Confidence 68999999999999999999999999999999999 77777777
Q ss_pred ---hhhhcCCcccCCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 003540 493 ---NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569 (812)
Q Consensus 493 ---~~~i~~P~e~~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~ 569 (812)
..+|..-...++......|+.+|+||+|||.|.+|... ||||.+.+++|.||..|+++|..++..--..++
T Consensus 351 e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s------LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n 424 (971)
T KOG0385|consen 351 EDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS------LPPKKELIIYVGMSSMQKKWYKAILMKDLDALN 424 (971)
T ss_pred HHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc------CCCcceeeEeccchHHHHHHHHHHHHhcchhhc
Confidence 45555555667778899999999999999999999887 999999999999999999999999876544332
Q ss_pred HHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHH
Q 003540 570 QFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQ 649 (812)
Q Consensus 570 ~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 649 (812)
..+.. ..+.+++.+|+||+|||||+|+... ++ + +.-...++
T Consensus 425 ---~~~~~--~k~kL~NI~mQLRKccnHPYLF~g~-eP----------------------g-----~pyttdeh------ 465 (971)
T KOG0385|consen 425 ---GEGKG--EKTKLQNIMMQLRKCCNHPYLFDGA-EP----------------------G-----PPYTTDEH------ 465 (971)
T ss_pred ---ccccc--hhhHHHHHHHHHHHhcCCccccCCC-CC----------------------C-----CCCCcchH------
Confidence 22221 3567889999999999999999531 00 0 00000111
Q ss_pred ccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHH
Q 003540 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAV 729 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~a 729 (812)
-...|+|+..
T Consensus 466 ----------------------------------------------------------------------Lv~nSGKm~v 475 (971)
T KOG0385|consen 466 ----------------------------------------------------------------------LVTNSGKMLV 475 (971)
T ss_pred ----------------------------------------------------------------------HHhcCcceeh
Confidence 1236999999
Q ss_pred HHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-CcEEEEEeCCCCcccc
Q 003540 730 LLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 730 Ll~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~-~~~VlLlSlrAGG~GL 807 (812)
|.++|..+.+.|+||+||||||+|||+|+.++.-+|+.|+|+||+|+..+|.++|+.||.++ ..+|||+||||||+||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999976 6899999999999997
No 3
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-54 Score=486.02 Aligned_cols=365 Identities=30% Similarity=0.454 Sum_probs=275.7
Q ss_pred CCCcccc--cCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCce
Q 003540 326 EPPSTLK--CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (812)
Q Consensus 326 ~~p~~l~--~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGI 403 (812)
++|+.+. .+|++||+-||.|+.-..+ ....||
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk----------------------------------------------~~l~gI 422 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYK----------------------------------------------KKLNGI 422 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHH----------------------------------------------ccccce
Confidence 4666553 5799999999999877644 244689
Q ss_pred eecCCCChhHHHHHHHHHhccc---CCCCcccccCCCCCCCCccccc---------------------------------
Q 003540 404 LADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 404 LADEMGLGKTIq~iaLI~~~~~---~~~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
||||||||||||+||+++.... .++.++|+|+|.+.||.+|+.+
T Consensus 423 LADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydV 502 (941)
T KOG0389|consen 423 LADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDV 502 (941)
T ss_pred ehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccE
Confidence 9999999999999999987765 4588999999999999999755
Q ss_pred --------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh---------
Q 003540 448 --------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--------- 492 (812)
Q Consensus 448 --------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW--------- 492 (812)
+.||+|-.++..+..+...-.++++.++++||||+ +++|.+.|
T Consensus 503 llTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPL--QNNL~ELiSLL~FvlP~ 580 (941)
T KOG0389|consen 503 LLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPL--QNNLKELISLLAFVLPK 580 (941)
T ss_pred EEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcc--cccHHHHHHHHHHHhhH
Confidence 56777878887777777666778889999999999 77888877
Q ss_pred ---------hhhhc-CCcccCC-------HHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHH
Q 003540 493 ---------NKLIQ-KPYEEGD-------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD 555 (812)
Q Consensus 493 ---------~~~i~-~P~e~~~-------~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~ 555 (812)
...|. ++-..+| ..++.+-++||.||+|||.|++|..+ ||||+.+|++|+|++.|+.
T Consensus 581 vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~------LPpK~~~Ie~c~mse~Q~~ 654 (941)
T KOG0389|consen 581 VFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ------LPPKIQRIEYCEMSEKQKQ 654 (941)
T ss_pred hhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------cCCccceeEeeecchHHHH
Confidence 11111 1111222 24577888999999999999999888 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCC
Q 003540 556 FYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDV 635 (812)
Q Consensus 556 ~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 635 (812)
+|+.+++........... ...+.+ -..+|+||++++||.|.+.--. ...+..+.++.+.+..- ..
T Consensus 655 ~Y~~~~~~~~~~~~~~~~-ns~~~~----~~vlmqlRK~AnHPLL~R~~Y~---de~L~~mak~il~e~ay-------~~ 719 (941)
T KOG0389|consen 655 LYDELIELYDVKLNEVSK-NSELKS----GNVLMQLRKAANHPLLFRSIYT---DEKLRKMAKRILNEPAY-------KK 719 (941)
T ss_pred HHHHHHHHHhhhcccccc-cccccc----chHHHHHHHHhcChhHHHHhcc---HHHHHHHHHHHhCchhh-------hh
Confidence 999998877433221111 111111 3468999999999999975322 23456666666554322 11
Q ss_pred CchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCcccc
Q 003540 636 PSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQV 715 (812)
Q Consensus 636 ~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~ 715 (812)
.+..|+-+-++-+.+.+ .|..|..-= ....+++
T Consensus 720 ~n~qyIfEDm~~msDfe-------------------lHqLc~~f~----------------------------~~~~f~L 752 (941)
T KOG0389|consen 720 ANEQYIFEDMEVMSDFE-------------------LHQLCCQFR----------------------------HLSKFQL 752 (941)
T ss_pred cCHHHHHHHHHhhhHHH-------------------HHHHHHhcC----------------------------CCccccc
Confidence 23334333333222111 355553210 0011111
Q ss_pred ccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEE
Q 003540 716 DIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMV 795 (812)
Q Consensus 716 ~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~V 795 (812)
....|..|+|+..|-.+|.++.++|+|||||||||+|||+||.+|+..|+.|+||||+|....|+.+|++|+.+.+++|
T Consensus 753 -~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difV 831 (941)
T KOG0389|consen 753 -KDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFV 831 (941)
T ss_pred -CCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEE
Confidence 1235778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccc
Q 003540 796 SDSSFLKDFFSL 807 (812)
Q Consensus 796 lLlSlrAGG~GL 807 (812)
||+||||||+||
T Consensus 832 FLLSTKAGG~GI 843 (941)
T KOG0389|consen 832 FLLSTKAGGFGI 843 (941)
T ss_pred EEEeeccCccee
Confidence 999999999998
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.7e-54 Score=482.29 Aligned_cols=319 Identities=28% Similarity=0.421 Sum_probs=271.4
Q ss_pred CCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCcee
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGIL 404 (812)
+..|..+...|+|||++||+||+.+.+ ...||||
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~----------------------------------------------q~~GGIL 229 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYC----------------------------------------------QRAGGIL 229 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHh----------------------------------------------ccCCCee
Confidence 567888999999999999999998855 3569999
Q ss_pred ecCCCChhHHHHHHHHHhcccC----CCCcccccCCCCCCCCccccc---------------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTHSQR----GGLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~iaLI~~~~~~----~~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
|||||||||||+||++.+.... ++.++|||++++.+|..|+..
T Consensus 230 gDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~ 309 (923)
T KOG0387|consen 230 GDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLI 309 (923)
T ss_pred cccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhhe
Confidence 9999999999999999776554 588999999999999887532
Q ss_pred --------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh---
Q 003540 448 --------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--- 492 (812)
Q Consensus 448 --------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW--- 492 (812)
++||+|.++|..++.+-..+.+.+.+++.++|||| +++|-+.|
T Consensus 310 r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPi--QNnL~ELwsLf 387 (923)
T KOG0387|consen 310 RKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPI--QNNLTELWSLF 387 (923)
T ss_pred eeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccc--cchHHHHHHHh
Confidence 68999999999999999999999999999999999 77777777
Q ss_pred --------------hhhhcCCcccCC------------HHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEE
Q 003540 493 --------------NKLIQKPYEEGD------------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIY 546 (812)
Q Consensus 493 --------------~~~i~~P~e~~~------------~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~ 546 (812)
+.+|..|+..|. .+....|+.+++|++|||+|.++.. +.||.|.+.|++
T Consensus 388 DFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-----~~Lp~K~E~Vlf 462 (923)
T KOG0387|consen 388 DFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-----LKLPKKEEIVLF 462 (923)
T ss_pred hhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-----ccCCCccceEEE
Confidence 667888887663 2346679999999999999999876 349999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCC
Q 003540 547 CELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSN 626 (812)
Q Consensus 547 v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~ 626 (812)
|.||+.||.+|+.+++.... +..+. ....+|.-|.-||++||||.|+..+....
T Consensus 463 C~LT~~QR~~Y~~fl~s~~v--~~i~n------g~~~~l~Gi~iLrkICnHPdll~~~~~~~------------------ 516 (923)
T KOG0387|consen 463 CRLTKLQRRLYQRFLNSSEV--NKILN------GKRNCLSGIDILRKICNHPDLLDRRDEDE------------------ 516 (923)
T ss_pred EeccHHHHHHHHHHhhhHHH--HHHHc------CCccceechHHHHhhcCCcccccCccccc------------------
Confidence 99999999999999887542 23322 22356788899999999999996431000
Q ss_pred cccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 627 ALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
..
T Consensus 517 -~~----------------------------------------------------------------------------- 518 (923)
T KOG0387|consen 517 -KQ----------------------------------------------------------------------------- 518 (923)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCccccccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHH
Q 003540 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS-RNNIPFLRLDGTLNQQQREKVLK 785 (812)
Q Consensus 707 ~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~-~~gi~~~rlDGs~s~~~R~~~I~ 785 (812)
..+.+..+..|+|+.+|.++|..|.++|+||++|||-..|||+||..|. ..||.|+|+||+++.+.|+.+|+
T Consensus 519 -------~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 519 -------GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred -------CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0011234567999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred HhhcCCCcEEEEEeCCCCcccc
Q 003540 786 QFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 786 ~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+||+++.+.||||||++||+||
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGl 613 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGL 613 (923)
T ss_pred hhcCCCceEEEEEEeccccccc
Confidence 9999999999999999999997
No 5
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-50 Score=471.47 Aligned_cols=519 Identities=28% Similarity=0.369 Sum_probs=385.0
Q ss_pred cCCCccCCCCeEEEEEEEEEeccccccccCcccccCCCCccccccccCChhhHhHhhCccccCCCCCCCcccccccCCCC
Q 003540 193 SAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLD 272 (812)
Q Consensus 193 ~~~~~l~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~l~p~~~~~~~~~~~~~~~~~l~ 272 (812)
.+|..+..++.....+.++..++.|..... .+.+.. ...+..+|...++.++..+..+.. ++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--------~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 70 (674)
T KOG1001|consen 6 APPKKLEDRDDSGGIVTVATDSSIIDQVII--------LEQRSQ--GTSLLKLNLIVGTPEWIKSWKLPF-----AGLLN 70 (674)
T ss_pred CCccccCccccccceeeeccchhhhhhccc--------cchhhh--ccchhhhhcccCccccchhhcccc-----cccCC
Confidence 456999999999999999999999865431 111112 455677777777777655444322 22222
Q ss_pred CcCCCCccccccccccccc-ccCCCCCCCCCCCCChHHHHHHHhcCCCC----CCccCCCCcccccCChHHHHHHHHHHH
Q 003540 273 SKDGCGLHASLLHANKSKV-QSAKVNDVDDVEPISDSDVDNIVGVGYSS----EIEEMEPPSTLKCELRPYQKQALHWMV 347 (812)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~e~l~~~~l~~~~~~~~~~----~l~~~~~p~~l~~~LrpyQkqgl~WMl 347 (812)
..............+.... ..........++.+. ...+|+.+... ......|...++.. |++.+.||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~ 143 (674)
T KOG1001|consen 71 DDDLLISYKYLRTKSRSSNELAKNDIVITTEDTLK---NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSL 143 (674)
T ss_pred CcccccchhhhhhccCCccccccccccccchhhcc---cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHh
Confidence 1111111111111111111 011111122222222 34444443321 22223333334333 777777777
Q ss_pred hcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCceeecCCCChhHHHHHHHHHhcccC-
Q 003540 348 QLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR- 426 (812)
Q Consensus 348 ~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGILADEMGLGKTIq~iaLI~~~~~~- 426 (812)
..+. ..+.++||||||+||||||+++|++++..+..
T Consensus 144 ~~~~-------------------------------------------~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~ 180 (674)
T KOG1001|consen 144 LKSR-------------------------------------------EQQSLRGGILADDMGLGKTVKTIALILKQKLKS 180 (674)
T ss_pred hccc-------------------------------------------ccCccccceEeeccccchHHHHHHHHHhcccCC
Confidence 6543 12358899999999999999999999976643
Q ss_pred ---------CCCcccccCCCCCCCCccccc------------------------------------------------cc
Q 003540 427 ---------GGLSGIQSASQPSDGGIEGYD------------------------------------------------IS 449 (812)
Q Consensus 427 ---------~~~l~v~p~s~~~~w~~e~~~------------------------------------------------~~ 449 (812)
.+.+++||++++.+|..++.+ +.
T Consensus 181 ~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~~~l~~i~w~Riil 260 (674)
T KOG1001|consen 181 KEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKNSPLVKIKWLRIVL 260 (674)
T ss_pred cchhhccccCceeEecchHHHHHHHHHHhccCCccceEEEEecccccccchhcCCceEEeeHHHhhcccccceeEEEEEe
Confidence 357899999999999888722 35
Q ss_pred ccCCcccccCccchhhHHHhhhcceeccCCceee---------------cccchhHHhhhhhcCCcccCC-HHHHHHHHH
Q 003540 450 DQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLII---------------CPMTLLGQWNKLIQKPYEEGD-ERGLKLVQS 513 (812)
Q Consensus 450 de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv---------------~P~sll~qW~~~i~~P~e~~~-~~~~~~L~~ 513 (812)
|++|.+++.......+.-.+...++|+++|||+. -|+..-..|...+..|++.+. .+++..++.
T Consensus 261 dea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~ 340 (674)
T KOG1001|consen 261 DEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQG 340 (674)
T ss_pred ccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 5666666666655555555677899999999983 344455577889999999999 799999999
Q ss_pred HhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhc
Q 003540 514 ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ 593 (812)
Q Consensus 514 iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq 593 (812)
+|.+++|||||.+... |+|++.|||+++.+++++++..|+.+|+.+....+..+..+...|++..+|+.++..++||||
T Consensus 341 ~L~~v~lrrtK~~~~~-gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq 419 (674)
T KOG1001|consen 341 ILKKVMLRRTKEMEVD-GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQ 419 (674)
T ss_pred HHHHHHhccccccccc-CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHH
Confidence 9999999999999877 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcc
Q 003540 594 CCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAH 673 (812)
Q Consensus 594 ~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H 673 (812)
+||||.++.......... .........++..+..+ ..|++|.+ .+.++++.|+|
T Consensus 420 ~c~h~~lv~~~~~~~~~~-----------------------~~~~~~~~~~i~~l~~~--~~c~ic~~-~~~~~it~c~h 473 (674)
T KOG1001|consen 420 ACDHSLLVMYEMDSLGDS-----------------------GSAAALIIRLIVDLSVS--HWCHICCD-LDSFFITRCGH 473 (674)
T ss_pred HccchHhhhhhhhccccc-----------------------cccchHHHHHHHHHhhc--cccccccc-cccceeecccc
Confidence 999999987542221100 00111222255555555 89999999 99999999999
Q ss_pred hhchhhhhhhhcCCCCCCCCCCCccccccccccCCCC-CccccccccccccchhHHHHHHHHHHHccCCC-eEEEEcCcH
Q 003540 674 RLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG-SRFQVDIEKNWVESTKIAVLLKELENLCLSGS-KSILFSQWT 751 (812)
Q Consensus 674 ~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~-~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~-KvVVFSQft 751 (812)
.+|.+|+..+++......||.||..+...+++..... +.+.. .. ..|.|+.++++.|........ |+||||||+
T Consensus 474 ~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~-~~---~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~ 549 (674)
T KOG1001|consen 474 DFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND-LL---PESSKIYAFLKILQAKEMSEQPKIVIFSQLI 549 (674)
T ss_pred hHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh-cc---chhhhhHHHHHHHhhccCCCCCceeeehhHH
Confidence 9999999999998887899999999999999886432 22221 11 179999999999995544444 999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 752 AFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 752 s~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.+|++++..|...++.+.|+||+|+.++|.+++..|+.++.++|+|+|++|||+||
T Consensus 550 ~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~gl 605 (674)
T KOG1001|consen 550 WGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGL 605 (674)
T ss_pred HHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999998
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-50 Score=459.94 Aligned_cols=220 Identities=27% Similarity=0.480 Sum_probs=188.5
Q ss_pred CCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCcee
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGIL 404 (812)
++.|.-|+..||.||+.||.||..+.. ...+|||
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYe----------------------------------------------knlNGIL 639 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYE----------------------------------------------KNLNGIL 639 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHH----------------------------------------------hccccee
Confidence 466778899999999999999998744 3457999
Q ss_pred ecCCCChhHHHHHHHHHhcccCC----CCcccccCCCCCCCCccccc---------------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTHSQRG----GLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~iaLI~~~~~~~----~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
|||||||||||+|||+++.-+.. +.++|+|.+++.||.-|++.
T Consensus 640 ADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVC 719 (1958)
T KOG0391|consen 640 ADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVC 719 (1958)
T ss_pred hhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEe
Confidence 99999999999999998776643 67899999999999888754
Q ss_pred ----------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh-------------
Q 003540 448 ----------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW------------- 492 (812)
Q Consensus 448 ----------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW------------- 492 (812)
++||++++++-.+..|...-.+++.++++++|||+ .+++++.|
T Consensus 720 ItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPL--qNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 720 ITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPL--QNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred ehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCch--hhHHHHHHHHHHHhhchhhhh
Confidence 57888888888888888888888899999999999 88999999
Q ss_pred ----hhhhcCCccc---C----CHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHH
Q 003540 493 ----NKLIQKPYEE---G----DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561 (812)
Q Consensus 493 ----~~~i~~P~e~---~----~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~ 561 (812)
+.+|.+|+.. + +...+.+|+.+|+||+|||+|.+|.+. ||.|+++|++|.||..||.+|+.|.
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ------lpkKyEHvv~CrLSkRQR~LYDDfm 871 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ------LPKKYEHVVKCRLSKRQRALYDDFM 871 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh------cchhhhhheeeehhhhHHHHHHHHh
Confidence 6778887652 2 246788999999999999999999998 9999999999999999999999998
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccC
Q 003540 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604 (812)
Q Consensus 562 ~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~ 604 (812)
.+.... +.++ ..++++|++.||+||++||||-|+..+
T Consensus 872 sq~~TK--etLk----SGhfmsVlnilmqLrKvCNHPnLfEpR 908 (1958)
T KOG0391|consen 872 SQPGTK--ETLK----SGHFMSVLNILMQLRKVCNHPNLFEPR 908 (1958)
T ss_pred hccchh--hHhh----cCchhHHHHHHHHHHHHcCCCCcCCCC
Confidence 776543 3333 346789999999999999999998643
No 7
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.7e-50 Score=464.36 Aligned_cols=348 Identities=26% Similarity=0.403 Sum_probs=280.7
Q ss_pred HHHHhcCCCCCCccCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccc
Q 003540 311 DNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATI 390 (812)
Q Consensus 311 ~~~~~~~~~~~l~~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~ 390 (812)
+.+-++-+.+++|++..|--++.+||.||.+|+.|+.-..+
T Consensus 952 kFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnk--------------------------------------- 992 (1549)
T KOG0392|consen 952 KFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNK--------------------------------------- 992 (1549)
T ss_pred HHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHH---------------------------------------
Confidence 33456777889999999988999999999999999976533
Q ss_pred cCCcccccccCceeecCCCChhHHHHHHHHHhcccCC----------CCcccccCCCCCCCCccccc-------------
Q 003540 391 EFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG----------GLSGIQSASQPSDGGIEGYD------------- 447 (812)
Q Consensus 391 ~~P~~~~~~~GGILADEMGLGKTIq~iaLI~~~~~~~----------~~l~v~p~s~~~~w~~e~~~------------- 447 (812)
....||||||||||||+|+|+.|++..... |.++|||.++..+|..|+.+
T Consensus 993 -------y~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~ 1065 (1549)
T KOG0392|consen 993 -------YKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGP 1065 (1549)
T ss_pred -------hcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHhcchhhhhhhcCC
Confidence 134699999999999999999998654432 67899999999999988643
Q ss_pred ---------------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccch
Q 003540 448 ---------------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488 (812)
Q Consensus 448 ---------------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sl 488 (812)
++||+|-++|..++.+++.+.+.+++++.++|||| .++.
T Consensus 1066 p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPI--QNnv 1143 (1549)
T KOG0392|consen 1066 PAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPI--QNNV 1143 (1549)
T ss_pred hHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCc--ccCH
Confidence 68999999999999999999999999999999999 7888
Q ss_pred hHHh-----------------hhhhcCCcccC------------CHHHHHHHHHHhhhhhhhccccccccCCCCcccCCC
Q 003540 489 LGQW-----------------NKLIQKPYEEG------------DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539 (812)
Q Consensus 489 l~qW-----------------~~~i~~P~e~~------------~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPp 539 (812)
++.| +..|.+|+-.- ..-+++.|+..+-||||||+|.+|..| |||
T Consensus 1144 leLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D------LPp 1217 (1549)
T KOG0392|consen 1144 LELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD------LPP 1217 (1549)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh------CCh
Confidence 8888 55567777421 135789999999999999999999998 999
Q ss_pred CcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc--HHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHH
Q 003540 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHN--YASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLA 617 (812)
Q Consensus 540 k~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~--~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~ 617 (812)
|.++..+|+||+.|+++|+.+..+++.....-...|..... .++||+.|..||+.|+||.|+.....+ ++....
T Consensus 1218 KIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp----~la~i~ 1293 (1549)
T KOG0392|consen 1218 KIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP----DLAAIV 1293 (1549)
T ss_pred hhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcc----hHHHHH
Confidence 99999999999999999999999976665444433332222 689999999999999999999865332 122111
Q ss_pred HHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCc
Q 003540 618 KRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (812)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~ 697 (812)
+....... .
T Consensus 1294 ~~l~~~~~---------------------~-------------------------------------------------- 1302 (1549)
T KOG0392|consen 1294 SHLAHFNS---------------------S-------------------------------------------------- 1302 (1549)
T ss_pred HHHHHhhh---------------------h--------------------------------------------------
Confidence 11100000 0
Q ss_pred cccccccccCCCCCccccccccccccchhHHHHHHHHHHHc--------------cCCCeEEEEcCcHHHHHHHHHHHHh
Q 003540 698 TISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLC--------------LSGSKSILFSQWTAFLDLLQIPLSR 763 (812)
Q Consensus 698 ~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~--------------~~~~KvVVFSQfts~LdlIe~~L~~ 763 (812)
-.+...|.|+.||-++|.++- ..+||++||+||.++||+++..|-+
T Consensus 1303 --------------------LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1303 --------------------LHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred --------------------HHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 011234666666666666542 1379999999999999999999877
Q ss_pred C---CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 764 N---NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 764 ~---gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
. .+.|+|+||++++.+|++++++||+||.+.|||++|.+||+||
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGL 1409 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGL 1409 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecccccc
Confidence 4 6779999999999999999999999999999999999999998
No 8
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=3e-50 Score=468.65 Aligned_cols=320 Identities=29% Similarity=0.474 Sum_probs=260.7
Q ss_pred cCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCceeecCCCChh
Q 003540 333 CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGK 412 (812)
Q Consensus 333 ~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGILADEMGLGK 412 (812)
.+||.||.+||.||+.. |- ....|||||||||||
T Consensus 369 ~~LRdyQLeGlNWl~~~----------------W~------------------------------~~~n~ILADEmgLgk 402 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYS----------------WY------------------------------KRNNCILADEMGLGK 402 (1373)
T ss_pred chhhhhhcccchhHHHH----------------HH------------------------------hcccceehhhcCCCc
Confidence 69999999999999975 41 134699999999999
Q ss_pred HHHHHHHHHhc----ccCCCCcccccCCCCCCCCccccc-----------------------------------------
Q 003540 413 TVMTIALLLTH----SQRGGLSGIQSASQPSDGGIEGYD----------------------------------------- 447 (812)
Q Consensus 413 TIq~iaLI~~~----~~~~~~l~v~p~s~~~~w~~e~~~----------------------------------------- 447 (812)
|||+|+++.+. ...+|.++|+|+|.+.+|..++..
T Consensus 403 tvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltT 482 (1373)
T KOG0384|consen 403 TVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTT 482 (1373)
T ss_pred chHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehh
Confidence 99999988543 346789999999999999887532
Q ss_pred -------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh--hhh-----------
Q 003540 448 -------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--NKL----------- 495 (812)
Q Consensus 448 -------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW--~~~----------- 495 (812)
++|++|..+|..++++.....+...++++.+|||+ ++++-+.| -.|
T Consensus 483 ye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPl--QNsikEL~sLl~Fl~P~kf~~~~~ 560 (1373)
T KOG0384|consen 483 YEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPL--QNSLKELWSLLHFLMPGKFDSWDE 560 (1373)
T ss_pred hHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCc--cccHHHHHHHhcccCCCCCCcHHH
Confidence 57888999998888888888888999999999999 66777767 222
Q ss_pred hcCCcccCCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003540 496 IQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQG 575 (812)
Q Consensus 496 i~~P~e~~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g 575 (812)
|..-+.......+..||.+|+|+||||.|.+|.+. ||||.+.|+.|+||..|+++|..|+.+-...+ .+|
T Consensus 561 f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks------lp~k~E~IlrVels~lQk~yYk~ILtkN~~~L----tKG 630 (1373)
T KOG0384|consen 561 FLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS------LPPKEETILRVELSDLQKQYYKAILTKNFSAL----TKG 630 (1373)
T ss_pred HHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC------CCCCcceEEEeehhHHHHHHHHHHHHhhHHHH----hcc
Confidence 22223444567899999999999999999999998 99999999999999999999999998876543 344
Q ss_pred cccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCC
Q 003540 576 RILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE 655 (812)
Q Consensus 576 ~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~e 655 (812)
....+ .++|+.+|-||+|||||+|+.+... .....|.+ . . .++.++.|
T Consensus 631 ~~g~~-~~lLNimmELkKccNHpyLi~gaee--------~~~~~~~~---~---------~----~d~~L~~l------- 678 (1373)
T KOG0384|consen 631 AKGST-PSLLNIMMELKKCCNHPYLIKGAEE--------KILGDFRD---K---------M----RDEALQAL------- 678 (1373)
T ss_pred CCCCC-chHHHHHHHHHHhcCCccccCcHHH--------HHHHhhhh---c---------c----hHHHHHHH-------
Confidence 44444 7899999999999999999965311 00000000 0 0 11111111
Q ss_pred CCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHH
Q 003540 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELE 735 (812)
Q Consensus 656 C~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~ 735 (812)
+..|+|+..|.++|-
T Consensus 679 -----------------------------------------------------------------I~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 679 -----------------------------------------------------------------IQSSGKLVLLDKLLP 693 (1373)
T ss_pred -----------------------------------------------------------------HHhcCcEEeHHHHHH
Confidence 246999999999999
Q ss_pred HHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-CcEEEEEeCCCCcccc
Q 003540 736 NLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 736 ~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~-~~~VlLlSlrAGG~GL 807 (812)
.|++.|||||||||++.|||+|+++|..++|+|-||||++...-|+.+|++||... .-+|||+||||||+||
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 99999999999999999999999999999999999999999999999999999854 5689999999999998
No 9
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-49 Score=439.80 Aligned_cols=372 Identities=29% Similarity=0.415 Sum_probs=282.5
Q ss_pred cCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCce
Q 003540 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (812)
Q Consensus 324 ~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGI 403 (812)
-+++|.+++..|.|||+.|+.||+.||. +...|||
T Consensus 315 lte~P~g~~v~LmpHQkaal~Wl~wRE~---------------------------------------------q~~~GGI 349 (901)
T KOG4439|consen 315 LTETPDGLKVELMPHQKAALRWLLWRES---------------------------------------------QPPSGGI 349 (901)
T ss_pred ccCCCCcceeecchhhhhhhhhhccccc---------------------------------------------CCCCCcc
Confidence 3789999999999999999999999986 2467999
Q ss_pred eecCCCChhHHHHHHHHHhcccC-----------CCCcccccCCCCCCCCccccc-------------------------
Q 003540 404 LADAMGLGKTVMTIALLLTHSQR-----------GGLSGIQSASQPSDGGIEGYD------------------------- 447 (812)
Q Consensus 404 LADEMGLGKTIq~iaLI~~~~~~-----------~~~l~v~p~s~~~~w~~e~~~------------------------- 447 (812)
||||||||||+.|||||++.... ..++++||.+++++|..|+..
T Consensus 350 LaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L 429 (901)
T KOG4439|consen 350 LADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKEL 429 (901)
T ss_pred cccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHH
Confidence 99999999999999999865431 147899999999999888633
Q ss_pred --------------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeec-----
Q 003540 448 --------------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIIC----- 484 (812)
Q Consensus 448 --------------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~----- 484 (812)
|+||+|.+++..++.....-.+.+..+|+++||||.+
T Consensus 430 ~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~Dv 509 (901)
T KOG4439|consen 430 RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDV 509 (901)
T ss_pred hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHH
Confidence 6889999998887776666667888999999999943
Q ss_pred ----------ccchhHHhhhhhcCCcccCCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHH
Q 003540 485 ----------PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554 (812)
Q Consensus 485 ----------P~sll~qW~~~i~~P~e~~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er 554 (812)
|...+.+|++.+..+ .....++|.-+.+++||||||+.... +.+++.||++.++++.++|+..|.
T Consensus 510 ysLlrFLr~~pF~D~~~Wke~i~~~----s~~g~~rlnll~K~LmLRRTKdQl~a-~~klv~Lp~k~i~l~~leLs~~E~ 584 (901)
T KOG4439|consen 510 YSLLRFLRCPPFGDLKQWKENIDNM----SKGGANRLNLLTKSLMLRRTKDQLQA-NGKLVNLPEKNIELHELELSGDEA 584 (901)
T ss_pred HHHHHHhcCCCcchHHHHHHhccCc----cccchhhhhhhhhhHHhhhhHHhhcc-ccccccCcccceEEEEEeecchHH
Confidence 334455666666433 34556888999999999999999887 678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------------------------------------cccccHHHHHHHHHHhhcccCCc
Q 003540 555 DFYEALFKRSKVKFDQFVEQG------------------------------------RILHNYASILELLLRLRQCCDHP 598 (812)
Q Consensus 555 ~~Y~~i~~~~~~~~~~~~~~g------------------------------------~~~~~~~~il~~l~rLRq~c~HP 598 (812)
..|+-+.+.++..|.+++.+. ...+....||.+|+||||+||||
T Consensus 585 ~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~ 664 (901)
T KOG4439|consen 585 KVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHF 664 (901)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999887755331 11223467999999999999999
Q ss_pred cccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchh
Q 003540 599 FLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRE 678 (812)
Q Consensus 599 ~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~ 678 (812)
.++....+..++. +.+... +. ....-...+.++..... |.|...-|.
T Consensus 665 ~~~k~~ld~~~~~---------~~g~~~-------sd-e~~~e~~~l~el~k~~~---------------T~~~~D~~e- 711 (901)
T KOG4439|consen 665 GLLKAALDPEEFQ---------MNGGDD-------SD-EEQLEEDNLAELEKNDE---------------TDCSDDNCE- 711 (901)
T ss_pred chhccccCHHHhh---------hcCcch-------hh-hhhhhhhHHHhhhhccc---------------ccccccccc-
Confidence 8887654433220 001000 00 00111122223322221 111111111
Q ss_pred hhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHH-ccCCCeEEEEcCcHHHHHHH
Q 003540 679 CLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL-CLSGSKSILFSQWTAFLDLL 757 (812)
Q Consensus 679 Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l-~~~~~KvVVFSQfts~LdlI 757 (812)
+ .| ..+..........|+|+..++..|+.+ ....+|+||.|||+++|+++
T Consensus 712 ------------------------d---~p--~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv 762 (901)
T KOG4439|consen 712 ------------------------D---LP--TAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIV 762 (901)
T ss_pred ------------------------c---cc--ccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHH
Confidence 0 00 001111223346799999999999998 44499999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCC-cEEEEEeCCCCcccc
Q 003540 758 QIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNN-IMVSDSSFLKDFFSL 807 (812)
Q Consensus 758 e~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~-~~VlLlSlrAGG~GL 807 (812)
+..|...|+.|.-|+|.+..++|+.+|++||...+ .+|||+|+.|||+||
T Consensus 763 ~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGL 813 (901)
T KOG4439|consen 763 RKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGL 813 (901)
T ss_pred HHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCccee
Confidence 99999999999999999999999999999999765 999999999999998
No 10
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-48 Score=470.51 Aligned_cols=318 Identities=27% Similarity=0.435 Sum_probs=258.9
Q ss_pred CCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCcee
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGIL 404 (812)
..+|..++.+|||||++||.||+.... .+.||||
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~----------------------------------------------~g~gGIL 193 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYE----------------------------------------------NGINGIL 193 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHh----------------------------------------------cCCCEEE
Confidence 356888999999999999999997632 3568999
Q ss_pred ecCCCChhHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccc---------------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~iaLI~~~~~----~~~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
|||||||||+|+||++..... .++.++|||.+++.+|..|+..
T Consensus 194 ADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVv 273 (1033)
T PLN03142 194 ADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVC 273 (1033)
T ss_pred EeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcc
Confidence 999999999999999976532 3578999999999999887532
Q ss_pred ----------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh-------------
Q 003540 448 ----------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW------------- 492 (812)
Q Consensus 448 ----------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW------------- 492 (812)
++||+|.+++..++.+.....+...+++++||||| ++++...|
T Consensus 274 ITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPl--qNnl~ELwsLL~FL~P~~f~s 351 (1033)
T PLN03142 274 VTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPL--QNNLHELWALLNFLLPEIFSS 351 (1033)
T ss_pred eecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCC--CCCHHHHHHHHhcCCCCcCCC
Confidence 67889999988888777777788889999999999 65665555
Q ss_pred ----hhhhcCCcccCCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 003540 493 ----NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKF 568 (812)
Q Consensus 493 ----~~~i~~P~e~~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~ 568 (812)
..+|..+-..+....+..|+.+|+|+||||+|.++..+ ||||.+.+++|+||+.|+++|+.++......+
T Consensus 352 ~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~------LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l 425 (1033)
T PLN03142 352 AETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG------LPPKKETILKVGMSQMQKQYYKALLQKDLDVV 425 (1033)
T ss_pred HHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh------CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 33344433344567788999999999999999999776 99999999999999999999999987755433
Q ss_pred HHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHH
Q 003540 569 DQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEEL 648 (812)
Q Consensus 569 ~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 648 (812)
+ .+ .....++..+++||++|+||.|+....... + +.
T Consensus 426 ~----~g---~~~~~LlnilmqLRk~cnHP~L~~~~ep~~---------------------------~---~~------- 461 (1033)
T PLN03142 426 N----AG---GERKRLLNIAMQLRKCCNHPYLFQGAEPGP---------------------------P---YT------- 461 (1033)
T ss_pred h----cc---ccHHHHHHHHHHHHHHhCCHHhhhcccccC---------------------------c---cc-------
Confidence 2 22 233568889999999999999874210000 0 00
Q ss_pred HccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHH
Q 003540 649 QKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIA 728 (812)
Q Consensus 649 ~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~ 728 (812)
+ . ......|+|+.
T Consensus 462 --------------------~-~----------------------------------------------e~lie~SgKl~ 474 (1033)
T PLN03142 462 --------------------T-G----------------------------------------------EHLVENSGKMV 474 (1033)
T ss_pred --------------------c-h----------------------------------------------hHHhhhhhHHH
Confidence 0 0 00113589999
Q ss_pred HHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-CcEEEEEeCCCCcccc
Q 003540 729 VLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 729 aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~-~~~VlLlSlrAGG~GL 807 (812)
.|.++|..+...++||||||||+.+|++|+.+|...|+.|+||||+++..+|+++|++|++++ ...|||+|++|||+||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 999999999888999999999999999999999999999999999999999999999999864 5679999999999998
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-47 Score=420.09 Aligned_cols=399 Identities=26% Similarity=0.373 Sum_probs=270.2
Q ss_pred cCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCce
Q 003540 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (812)
Q Consensus 324 ~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGI 403 (812)
.+++|+-|+++|+.||..||.|+..... .+..||
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYd----------------------------------------------qGiNGI 590 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYD----------------------------------------------QGINGI 590 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHH----------------------------------------------ccccce
Confidence 4789999999999999999999998632 366899
Q ss_pred eecCCCChhHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccc--------------------------------
Q 003540 404 LADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYD-------------------------------- 447 (812)
Q Consensus 404 LADEMGLGKTIq~iaLI~~~~~----~~~~l~v~p~s~~~~w~~e~~~-------------------------------- 447 (812)
||||||||||+|+||+++.... -+|.++|.|.|.+.||..|+..
T Consensus 591 LADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~r 670 (1185)
T KOG0388|consen 591 LADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRR 670 (1185)
T ss_pred ehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhcc
Confidence 9999999999999999986554 3578999999999999988744
Q ss_pred -----------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh------
Q 003540 448 -----------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW------ 492 (812)
Q Consensus 448 -----------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW------ 492 (812)
++||++.++...+..++....++++++++++||||.+ +..+.|
T Consensus 671 na~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQN--sMqELWALLHFI 748 (1185)
T KOG0388|consen 671 NAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQN--SMQELWALLHFI 748 (1185)
T ss_pred CCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccch--HHHHHHHHHHHH
Confidence 5677777777666667666778899999999999944 444455
Q ss_pred -----------hhhhcCCcccC-------CHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHH
Q 003540 493 -----------NKLIQKPYEEG-------DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554 (812)
Q Consensus 493 -----------~~~i~~P~e~~-------~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er 554 (812)
..+|.+-+++. +++.+.+|+.||+||||||-|.+|..+ |-.|++..++|+||..|+
T Consensus 749 MPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE------Lg~Kteidv~CdLs~RQ~ 822 (1185)
T KOG0388|consen 749 MPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE------LGQKTEIDVYCDLSYRQK 822 (1185)
T ss_pred hhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH------hccceEEEEEechhHHHH
Confidence 66777777642 468899999999999999999999887 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCc--------ch-----------------
Q 003540 555 DFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDT--------QD----------------- 609 (812)
Q Consensus 555 ~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~--------~~----------------- 609 (812)
.+|+.+...... ...+.++++||++||||.|+...... ..
T Consensus 823 ~lYq~ik~~iS~---------------~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP 887 (1185)
T KOG0388|consen 823 VLYQEIKRSISS---------------MEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIP 887 (1185)
T ss_pred HHHHHHHHHhhH---------------HHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecch
Confidence 999998665431 12335789999999999998643110 00
Q ss_pred ---hhHHHHHH--------------HHHhccCCC-c------ccCC--CCCCCch-HHHHHHHHHHHccCCCCCCccccc
Q 003540 610 ---YSDLNKLA--------------KRFLKGSSN-A------LEGE--DKDVPSR-AYVQEVVEELQKGEQGECPICLEA 662 (812)
Q Consensus 610 ---~~dl~~l~--------------~~~~~~~~~-~------~~~~--~~~~~~~-~~~~~~l~~l~~~~~~eC~iC~~~ 662 (812)
..|+.++. .+...+... . .+.. +....+. .....+...+-.-+..+-..-...
T Consensus 888 ~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rv 967 (1185)
T KOG0388|consen 888 SLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRV 967 (1185)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHH
Confidence 01111110 011111100 0 0000 0000000 011111111110000000000000
Q ss_pred ccc-ccccCCcchhchhhhhhhhcCCCCCCCCCCCcc---c-cccccccCCCCC-------cccccc-ccccccchhHHH
Q 003540 663 FED-AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT---I-SRQDLITAPTGS-------RFQVDI-EKNWVESTKIAV 729 (812)
Q Consensus 663 ~~~-~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~---i-~~~~l~~~~~~~-------~~~~~~-~~~~~~SsKl~a 729 (812)
++. ...+.| |.+| ..|+.+.+ | +..++-+++.+. .+.... ..-+..|+|+..
T Consensus 968 i~~e~~~L~~-~~y~--------------y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~ 1032 (1185)
T KOG0388|consen 968 IDEEAYRLQR-HVYC--------------YSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVV 1032 (1185)
T ss_pred hhHHHHHhhh-heee--------------eccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceee
Confidence 000 000000 1111 11222221 1 111221221111 111100 011357999999
Q ss_pred HHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 730 LLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 730 Ll~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
|..+|.+++++||+|++|-|+|.|+|+||++|..+|+.|+|+||+....+|..+|.+|+. ++++|||+||||||+||
T Consensus 1033 LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1033 LDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred HHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999 77999999999999998
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.3e-47 Score=437.19 Aligned_cols=337 Identities=25% Similarity=0.386 Sum_probs=272.0
Q ss_pred HHHHHhcCCCCCCccCCCCcc-cccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcc
Q 003540 310 VDNIVGVGYSSEIEEMEPPST-LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEA 388 (812)
Q Consensus 310 l~~~~~~~~~~~l~~~~~p~~-l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~ 388 (812)
...+|..++.......++|.. ...+|++||..||+||.++.++
T Consensus 369 ~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNN------------------------------------ 412 (1157)
T KOG0386|consen 369 NGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNN------------------------------------ 412 (1157)
T ss_pred chhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCC------------------------------------
Confidence 356778887766666677764 4689999999999999988542
Q ss_pred cccCCcccccccCceeecCCCChhHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccc-----------------
Q 003540 389 TIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYD----------------- 447 (812)
Q Consensus 389 s~~~P~~~~~~~GGILADEMGLGKTIq~iaLI~~~~~----~~~~l~v~p~s~~~~w~~e~~~----------------- 447 (812)
...||||||||||||||+||||.+... .+|.++++|++.+.+|..|+..
T Consensus 413 ----------nLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R 482 (1157)
T KOG0386|consen 413 ----------NLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQR 482 (1157)
T ss_pred ----------CcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHH
Confidence 447999999999999999999987654 4688999999999999999754
Q ss_pred -------------------------------------ccccCCcccccCccchhhHH-HhhhcceeccCCceeecccchh
Q 003540 448 -------------------------------------ISDQSPNLMKKEPKSLSIDK-LIKQTNTLINGGTLIICPMTLL 489 (812)
Q Consensus 448 -------------------------------------~~de~~~~~~~~~~~~~~~~-~~~~~~~~~~~gTlIv~P~sll 489 (812)
|+|++|.+++...++..... .-.+.++++++|||+ .++|-
T Consensus 483 ~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPL--QN~Lp 560 (1157)
T KOG0386|consen 483 SGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPL--QNNLP 560 (1157)
T ss_pred hhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChh--hhccH
Confidence 67888888887766654333 335668899999999 66777
Q ss_pred HHh-----------------hhhhcCCcccCC----------HHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcE
Q 003540 490 GQW-----------------NKLIQKPYEEGD----------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADM 542 (812)
Q Consensus 490 ~qW-----------------~~~i~~P~e~~~----------~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~ 542 (812)
+.| ..+|..||.+-. .-.+.+|+.+|+||+|||.|++|..+ ||.|++
T Consensus 561 ELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~------LPdKve 634 (1157)
T KOG0386|consen 561 ELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE------LPDKVE 634 (1157)
T ss_pred HHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh------Cchhhh
Confidence 777 667889997532 13478899999999999999999988 999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhc
Q 003540 543 QVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLK 622 (812)
Q Consensus 543 ~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~ 622 (812)
.|+.|.+|..|+.+|..+.+.-.--.+ .......|..++..++.||++||||++..+-..
T Consensus 635 ~viKC~mSalQq~lY~~m~~~g~l~~d----~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~---------------- 694 (1157)
T KOG0386|consen 635 DVIKCDMSALQQSLYKQMQNKGQLLKD----TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN---------------- 694 (1157)
T ss_pred HhhheehhhhhHhhhHHHHhCCCCCcC----chhccccchhhhhHhHHHHHhcCCchhhhhhcc----------------
Confidence 999999999999999998654321111 112345567899999999999999999842100
Q ss_pred cCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccc
Q 003540 623 GSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (812)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~ 702 (812)
.|..|..+ .
T Consensus 695 --------------------------------~~~~~~~~---------------------------------------~ 703 (1157)
T KOG0386|consen 695 --------------------------------SYTLHYDI---------------------------------------K 703 (1157)
T ss_pred --------------------------------ccccccCh---------------------------------------h
Confidence 00000000 1
Q ss_pred ccccCCCCCccccccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Q 003540 703 DLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREK 782 (812)
Q Consensus 703 ~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~ 782 (812)
.-+..|+|+..|.++|-++++.||+|+.|+|.|+++|++|.+|.-.++.|+|+||++...+|..
T Consensus 704 ----------------dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ 767 (1157)
T KOG0386|consen 704 ----------------DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD 767 (1157)
T ss_pred ----------------HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH
Confidence 1134699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CcEEEEEeCCCCcccc
Q 003540 783 VLKQFSEDN-NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 783 ~I~~F~~~~-~~~VlLlSlrAGG~GL 807 (812)
+++.||.+. .+++||+|++|||+||
T Consensus 768 ll~~FN~Pds~yf~Fllstragglgl 793 (1157)
T KOG0386|consen 768 LLEIFNAPDSPYFIFLLSTRAGGLGL 793 (1157)
T ss_pred HHHHhcCCCCceeeeeeeeccccccc
Confidence 999999954 6899999999999997
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-40 Score=381.33 Aligned_cols=336 Identities=25% Similarity=0.308 Sum_probs=257.6
Q ss_pred CCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCcee
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGIL 404 (812)
+.+.|.++..|||||++|+.||+..-.+.. .| ....|||+
T Consensus 229 v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~-------------------------------------~~---~~~~GCIm 268 (776)
T KOG0390|consen 229 VVIDPLLKKILRPHQREGFEFLYKNLAGLI-------------------------------------RP---KNSGGCIM 268 (776)
T ss_pred EEecccHhhhcCchHHHHHHHHHhhhhccc-------------------------------------cc---CCCCceEe
Confidence 344567999999999999999998644321 01 13569999
Q ss_pred ecCCCChhHHHHHHHHHhcccCC--------CCcccccCCCCCCCCccccc-----------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTHSQRG--------GLSGIQSASQPSDGGIEGYD----------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~iaLI~~~~~~~--------~~l~v~p~s~~~~w~~e~~~----------------------------- 447 (812)
||+||||||.|+|+||.+..... ..++|+|++++.+|..|+.+
T Consensus 269 Ad~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~ 348 (776)
T KOG0390|consen 269 ADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFL 348 (776)
T ss_pred eCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHh
Confidence 99999999999999999887654 45889999999999888644
Q ss_pred --------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhHHh---
Q 003540 448 --------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--- 492 (812)
Q Consensus 448 --------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW--- 492 (812)
++||+|+.+|..+..+.....+++.++++++|||| ++++.+.+
T Consensus 349 ~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~--QNdl~EyFnlL 426 (776)
T KOG0390|consen 349 GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPI--QNDLKEYFNLL 426 (776)
T ss_pred hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcc--cccHHHHHHHH
Confidence 68888999888888888888889999999999999 66665555
Q ss_pred --------------hhhhcCCcccCC-----------HHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEe
Q 003540 493 --------------NKLIQKPYEEGD-----------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547 (812)
Q Consensus 493 --------------~~~i~~P~e~~~-----------~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v 547 (812)
++.+..|+..+. ...+..|..++..|++|||-+...+. ||++.++|+.|
T Consensus 427 ~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~------LP~k~e~vv~~ 500 (776)
T KOG0390|consen 427 DFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY------LPGKYEYVVFC 500 (776)
T ss_pred hhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh------CCCceeEEEEe
Confidence 444555554321 22377899999999999999776665 99999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCc
Q 003540 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNA 627 (812)
Q Consensus 548 ~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~ 627 (812)
.+++.|+.+|+.+.+.. ... ..+.| .|..++.|+++|+||.|+.-........+
T Consensus 501 n~t~~Q~~~~~~l~~~~-~~~--------~~~~~--~l~~~~~L~k~cnhP~L~~~~~~~~~e~~--------------- 554 (776)
T KOG0390|consen 501 NPTPIQKELYKKLLDSM-KMR--------TLKGY--ALELITKLKKLCNHPSLLLLCEKTEKEKA--------------- 554 (776)
T ss_pred CCcHHHHHHHHHHHHHH-Hhh--------hhhcc--hhhHHHHHHHHhcCHHhhccccccccccc---------------
Confidence 99999999999998875 211 01111 57889999999999999952111100000
Q ss_pred ccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccC
Q 003540 628 LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 628 ~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
..... .+..
T Consensus 555 ------~~~~~-----~~~~------------------------------------------------------------ 563 (776)
T KOG0390|consen 555 ------FKNPA-----LLLD------------------------------------------------------------ 563 (776)
T ss_pred ------ccChH-----hhhc------------------------------------------------------------
Confidence 00000 0000
Q ss_pred CCCCccccccccccccchhHHHHHHHHHHHccC-CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Q 003540 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCLS-GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786 (812)
Q Consensus 708 ~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~-~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~ 786 (812)
......+ ......|+|+..|+.+|...++. ..|+++.|+|+.+||+++..+..+|+.++|+||+|+.++|+.+|++
T Consensus 564 --~~~~~~~-~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~ 640 (776)
T KOG0390|consen 564 --PGKLKLD-AGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDT 640 (776)
T ss_pred --ccccccc-cccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHh
Confidence 0000000 11123589999999999777666 8899999999999999999999999999999999999999999999
Q ss_pred hhcCCCc-EEEEEeCCCCccccc
Q 003540 787 FSEDNNI-MVSDSSFLKDFFSLV 808 (812)
Q Consensus 787 F~~~~~~-~VlLlSlrAGG~GL~ 808 (812)
||++++. +|||+|++|||+||.
T Consensus 641 FN~p~~~~~vfLlSsKAgg~Gin 663 (776)
T KOG0390|consen 641 FNDPESPSFVFLLSSKAGGEGLN 663 (776)
T ss_pred ccCCCCCceEEEEecccccCcee
Confidence 9998876 999999999999984
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.2e-40 Score=374.13 Aligned_cols=413 Identities=20% Similarity=0.217 Sum_probs=268.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCcee
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGIL 404 (812)
++.|.+|...|+|||..|++|||..-... +..- ....+.||||
T Consensus 659 VqV~rslv~kLKpHQv~GvqFMwd~~~eS------------------------------------lkr~-~~~~GsGcIL 701 (1567)
T KOG1015|consen 659 VQVHRSLVIKLKPHQVDGVQFMWDCCCES------------------------------------LKRT-KKSPGSGCIL 701 (1567)
T ss_pred hhccHhHHhhcCcccccchhHHHHHHHHH------------------------------------HHhh-cCCCCcchHH
Confidence 56777899999999999999999863311 0000 1224789999
Q ss_pred ecCCCChhHHHHHHHHHhcccC-----CCCcccccCCCCCCCCccccc--------------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTHSQR-----GGLSGIQSASQPSDGGIEGYD-------------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~iaLI~~~~~~-----~~~l~v~p~s~~~~w~~e~~~-------------------------------- 447 (812)
|+-||||||+|+|+|+|+.... .+.++|||++++.||.+||..
T Consensus 702 AHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W 781 (1567)
T KOG1015|consen 702 AHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW 781 (1567)
T ss_pred HHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHH
Confidence 9999999999999999876542 257999999999999887643
Q ss_pred --------------------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceee
Q 003540 448 --------------------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLII 483 (812)
Q Consensus 448 --------------------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv 483 (812)
++|++|.++|..+....+...+.+++++++||||+
T Consensus 782 ~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPL- 860 (1567)
T KOG1015|consen 782 QEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPL- 860 (1567)
T ss_pred HhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCch-
Confidence 56777777777777777777889999999999999
Q ss_pred cccchhHHh-----------------hhhhcCCcccCC------------HHHHHHHHHHhhhhhhhccccccccCCCCc
Q 003540 484 CPMTLLGQW-----------------NKLIQKPYEEGD------------ERGLKLVQSILKPIMLRRTKSSTDREGRPI 534 (812)
Q Consensus 484 ~P~sll~qW-----------------~~~i~~P~e~~~------------~~~~~~L~~iL~p~~LRRtK~~v~~dG~pl 534 (812)
+++|.++. +..|..|+++|. .+....|...|+.++-|+....+.+.
T Consensus 861 -QNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~---- 935 (1567)
T KOG1015|consen 861 -QNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF---- 935 (1567)
T ss_pred -hhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc----
Confidence 66666554 777899999884 13456788899999999999988887
Q ss_pred ccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcc---hhh
Q 003540 535 LVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ---DYS 611 (812)
Q Consensus 535 v~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~---~~~ 611 (812)
||||+++|+.+.||+.|+.+|+++++... ........|.. ....+|+.+.-|+++.+||..+.-..+.. .+.
T Consensus 936 --LPPK~eyVi~vrltelQ~~LYq~yL~h~~-~~G~d~eg~~g--~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~ 1010 (1567)
T KOG1015|consen 936 --LPPKHEYVIAVRLTELQCKLYQYYLDHLT-GVGNDSEGGRG--AGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYF 1010 (1567)
T ss_pred --CCCceeEEEEEeccHHHHHHHHHHHhhcc-ccCCccccccc--hhhhHHHHHHHHHHHhcCCCceeechhhhhhcccc
Confidence 99999999999999999999999988321 11111111111 34578999999999999999875332110 000
Q ss_pred HHHHHHHHHhccCCCcccC-------------------CC-----CCCCchHHHHHHHHHHHccCCCCCCcccccccccc
Q 003540 612 DLNKLAKRFLKGSSNALEG-------------------ED-----KDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAV 667 (812)
Q Consensus 612 dl~~l~~~~~~~~~~~~~~-------------------~~-----~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~ 667 (812)
+... ...|........+. +. ....+...........+.+....-. +.-.++-
T Consensus 1011 sedd-m~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~---~~g~~~D 1086 (1567)
T KOG1015|consen 1011 SEDD-MDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVD---ETGNNPD 1086 (1567)
T ss_pred cccc-hhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCccc---ccCCCcc
Confidence 0000 11111110000000 00 0000011111111111111100000 0000000
Q ss_pred ccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHccCCCeEEEE
Q 003540 668 LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILF 747 (812)
Q Consensus 668 vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVF 747 (812)
. ...-.+-+..++-++..+ -|- +.. +++ ...-......|+||-.|+++|+..-+-|+|+|||
T Consensus 1087 ~----~l~ll~dlag~~s~~~d~-ppe---w~k--d~v--------~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVF 1148 (1567)
T KOG1015|consen 1087 V----SLKLLEDLAGSSSNPSDP-PPE---WYK--DFV--------TEADAEVLEHSGKMILLLEILRMCEEIGDKLLVF 1148 (1567)
T ss_pred h----HHHHhhcccccccCCCCC-chH---hHH--hhh--------hhhhhhhhhcCcceehHHHHHHHHHHhcceeEEe
Confidence 0 000000000000000000 000 000 000 0011234467999999999999986679999999
Q ss_pred cCcHHHHHHHHHHHHh----------------------CCCCEEEEeCCCCHHHHHHHHHHhhcCC--CcEEEEEeCCCC
Q 003540 748 SQWTAFLDLLQIPLSR----------------------NNIPFLRLDGTLNQQQREKVLKQFSEDN--NIMVSDSSFLKD 803 (812)
Q Consensus 748 SQfts~LdlIe~~L~~----------------------~gi~~~rlDGs~s~~~R~~~I~~F~~~~--~~~VlLlSlrAG 803 (812)
||....||+|+.+|.. .|..|+||||++...+|+++.++||+.. ..++||||||||
T Consensus 1149 SQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAG 1228 (1567)
T KOG1015|consen 1149 SQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAG 1228 (1567)
T ss_pred ecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccC
Confidence 9999999999999976 2778999999999999999999999965 467899999999
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
++||
T Consensus 1229 sLGi 1232 (1567)
T KOG1015|consen 1229 SLGI 1232 (1567)
T ss_pred cccc
Confidence 9997
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-34 Score=356.97 Aligned_cols=333 Identities=33% Similarity=0.452 Sum_probs=242.4
Q ss_pred cccccCChHHHHHHHHHHHh-cccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCceeecC
Q 003540 329 STLKCELRPYQKQALHWMVQ-LEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADA 407 (812)
Q Consensus 329 ~~l~~~LrpyQkqgl~WMl~-rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGILADE 407 (812)
..+...|+|||.+|+.||.. ... ...|||||||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~----------------------------------------------~~~~~ilaD~ 366 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS----------------------------------------------NLLGGILADD 366 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh----------------------------------------------ccCCCccccc
Confidence 57789999999999999984 321 3569999999
Q ss_pred CCChhHHHHHHHHHhccc-----CCCCcccccCCCCCCCCcccccccccCC-----------------------------
Q 003540 408 MGLGKTVMTIALLLTHSQ-----RGGLSGIQSASQPSDGGIEGYDISDQSP----------------------------- 453 (812)
Q Consensus 408 MGLGKTIq~iaLI~~~~~-----~~~~l~v~p~s~~~~w~~e~~~~~de~~----------------------------- 453 (812)
||||||+|+|+++.+... .++.+++||.+++.+|.+|+..+.....
T Consensus 367 mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 446 (866)
T COG0553 367 MGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVI 446 (866)
T ss_pred ccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccc
Confidence 999999999999975222 2468899999999999888766543332
Q ss_pred ------------------------------------cccccCccchhhHHHhhhcceeccCCceeecccchhHHh-----
Q 003540 454 ------------------------------------NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW----- 492 (812)
Q Consensus 454 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW----- 492 (812)
.+++..+..+.....++...++.++|||| ++++.+.|
T Consensus 447 ~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPl--en~l~eL~sl~~~ 524 (866)
T COG0553 447 IFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPL--ENRLGELWSLLQE 524 (866)
T ss_pred eeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChH--hhhHHHHHHHHHH
Confidence 01111000011111234456789999996 77777666
Q ss_pred --------------hhhhcCCcccCCH--------HHHHHHHHHhhhhhhhccccc--cccCCCCcccCCCCcEEEEEec
Q 003540 493 --------------NKLIQKPYEEGDE--------RGLKLVQSILKPIMLRRTKSS--TDREGRPILVLPPADMQVIYCE 548 (812)
Q Consensus 493 --------------~~~i~~P~e~~~~--------~~~~~L~~iL~p~~LRRtK~~--v~~dG~plv~LPpk~~~vv~v~ 548 (812)
..+|..|...... ..+..|+.+++||+|||+|.+ +..+ ||+|.+.++.|+
T Consensus 525 f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~------Lp~k~e~~~~~~ 598 (866)
T COG0553 525 FLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE------LPPKIEKVLECE 598 (866)
T ss_pred HhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh------CChhhhhhhhhc
Confidence 2333344333221 344448899999999999999 5555 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHhhccc--cc--cHHHHHHHHHHhhcccCCccccccCC-CcchhhHHHHHHHHH
Q 003540 549 LTEAEKDFYEALFK---RSKVKFDQFVEQGRI--LH--NYASILELLLRLRQCCDHPFLVMSRG-DTQDYSDLNKLAKRF 620 (812)
Q Consensus 549 LS~~Er~~Y~~i~~---~~~~~~~~~~~~g~~--~~--~~~~il~~l~rLRq~c~HP~L~~~~~-~~~~~~dl~~l~~~~ 620 (812)
++..|+.+|+.+.. .....+......+.. .. ....++..+++||++|+||.++.... ...
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~------------ 666 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF------------ 666 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc------------
Confidence 99999999999999 555555544333210 01 26789999999999999999986431 100
Q ss_pred hccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 621 LKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
+..|.....+.....|.|.
T Consensus 667 -----------------------------------~~~~~~~~~~~~~~~~~~~-------------------------- 685 (866)
T COG0553 667 -----------------------------------DRIVLLLREDKDFDYLKKP-------------------------- 685 (866)
T ss_pred -----------------------------------chhhhhhhcccccccccch--------------------------
Confidence 0000000000000011111
Q ss_pred ccccccCCCCCccccccccccccc-hhHHHHHHHH-HHHccCCC--eEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 003540 701 RQDLITAPTGSRFQVDIEKNWVES-TKIAVLLKEL-ENLCLSGS--KSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLN 776 (812)
Q Consensus 701 ~~~l~~~~~~~~~~~~~~~~~~~S-sKl~aLl~~L-~~l~~~~~--KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s 776 (812)
.+..| +|+..+.++| ..+..+++ |+||||||+.+|++|+..|...++.|++|||+++
T Consensus 686 -------------------~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~ 746 (866)
T COG0553 686 -------------------LIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTP 746 (866)
T ss_pred -------------------hhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence 12346 8999999999 78888898 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 777 QQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 777 ~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.++|+.+|++|+++++..|||+|++|||+||
T Consensus 747 ~~~r~~~i~~f~~~~~~~v~lls~kagg~gl 777 (866)
T COG0553 747 AKRRQELIDRFNADEEEKVFLLSLKAGGLGL 777 (866)
T ss_pred hhhHHHHHHHhhcCCCCceEEEEecccccce
Confidence 9999999999999988999999999999998
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=329.46 Aligned_cols=397 Identities=20% Similarity=0.254 Sum_probs=267.0
Q ss_pred ccCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCc
Q 003540 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402 (812)
Q Consensus 323 ~~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GG 402 (812)
+.+-..+.|...|+|||.-|++||++.--.. -++|+ .+.+.||
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iES------------l~ryk-------------------------kSsGFGC 285 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIES------------LGRYK-------------------------KSSGFGC 285 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHH------------Hhhcc-------------------------ccCCcce
Confidence 3345566789999999999999998763211 01111 2357899
Q ss_pred eeecCCCChhHHHHHHHH---HhcccCCCCcccccCCCCCCCCccccc--------------------------------
Q 003540 403 ILADAMGLGKTVMTIALL---LTHSQRGGLSGIQSASQPSDGGIEGYD-------------------------------- 447 (812)
Q Consensus 403 ILADEMGLGKTIq~iaLI---~~~~~~~~~l~v~p~s~~~~w~~e~~~-------------------------------- 447 (812)
|||+.||||||||+|+++ +.+....+++.++|.+.+.||.+|+..
T Consensus 286 ILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Ra 365 (1387)
T KOG1016|consen 286 ILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRA 365 (1387)
T ss_pred eeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHH
Confidence 999999999999999986 344445578999999999999887643
Q ss_pred -------------------------------------------------------------------------ccccCCc
Q 003540 448 -------------------------------------------------------------------------ISDQSPN 454 (812)
Q Consensus 448 -------------------------------------------------------------------------~~de~~~ 454 (812)
++||+|+
T Consensus 366 kvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHr 445 (1387)
T KOG1016|consen 366 KVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHR 445 (1387)
T ss_pred HHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCce
Confidence 6888899
Q ss_pred ccccCccchhhHHHhhhcceeccCCceeecccchhHHh-----------------hhhhcCCcccCC------------H
Q 003540 455 LMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW-----------------NKLIQKPYEEGD------------E 505 (812)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~qW-----------------~~~i~~P~e~~~------------~ 505 (812)
+++..+......+.+++++++.++|.|+ .++|++.| -..|.+|+.+|. .
T Consensus 446 IKN~~A~iS~aLk~IrtrRRiVLTGYPL--QNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmr 523 (1387)
T KOG1016|consen 446 IKNITAEISMALKAIRTRRRIVLTGYPL--QNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMR 523 (1387)
T ss_pred eccchHHHHHHHHHhhhceeEEEecccc--ccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHH
Confidence 9988888888888899999999999999 88999999 344678998873 1
Q ss_pred HHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 003540 506 RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASIL 585 (812)
Q Consensus 506 ~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il 585 (812)
....+|+.+|..|+-||+......- ||.|.++|+.|.+|..||++|+.|...+++.+.. .+... -+-|
T Consensus 524 yRtHVLhsLl~GFVQRR~HtvLk~~------LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~---~~~~~---~NPL 591 (1387)
T KOG1016|consen 524 YRTHVLHSLLKGFVQRRTHTVLKKI------LPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAA---NNDAV---FNPL 591 (1387)
T ss_pred HHHHHHHHHHHHHHHhcchhhHhhh------cccccceEEEEeHHHHHHHHHHHHHHHHHHhhcc---ccccc---cChH
Confidence 3457899999999999999887665 9999999999999999999999998777655322 12111 1344
Q ss_pred HHHHHhhcccCCccccccCCC-----cchhhHHHHHHHHHhccCCCc--ccCCCCCCCchHHHHHHHHHHHc-cCCCCCC
Q 003540 586 ELLLRLRQCCDHPFLVMSRGD-----TQDYSDLNKLAKRFLKGSSNA--LEGEDKDVPSRAYVQEVVEELQK-GEQGECP 657 (812)
Q Consensus 586 ~~l~rLRq~c~HP~L~~~~~~-----~~~~~dl~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~-~~~~eC~ 657 (812)
.++---.+++|||+.+..... ..+..+++++.-.-+.....- ....+.+.+......+....-.+ ....+.|
T Consensus 592 kAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p 671 (1387)
T KOG1016|consen 592 KAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAP 671 (1387)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCC
Confidence 455556778899998864211 111112222211101100000 00001111111111111100000 0000000
Q ss_pred ccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHH
Q 003540 658 ICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL 737 (812)
Q Consensus 658 iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l 737 (812)
--.+.-+++. + - ..+-.+-+ ..+.+.....+.|+..+++++.+-
T Consensus 672 ~f~ee~~e~~-~-y-~~w~~el~---------------------------------~nYq~gvLen~pk~V~~~~~~des 715 (1387)
T KOG1016|consen 672 KFDEEDEEVE-K-Y-SDWTFELF---------------------------------ENYQEGVLENGPKIVISLEILDES 715 (1387)
T ss_pred Cccccccccc-c-h-hhHHHHHH---------------------------------hhhhcccccCCCceEEEEeeeccc
Confidence 0000000000 0 0 00000000 111223345678999999999887
Q ss_pred ccCCCeEEEEcCcHHHHHHHHHHHHhC------------------CCCEEEEeCCCCHHHHHHHHHHhhcCCCcE-EEEE
Q 003540 738 CLSGSKSILFSQWTAFLDLLQIPLSRN------------------NIPFLRLDGTLNQQQREKVLKQFSEDNNIM-VSDS 798 (812)
Q Consensus 738 ~~~~~KvVVFSQfts~LdlIe~~L~~~------------------gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~-VlLl 798 (812)
...|+|+|||||-...||+|+..|.+. ++.|+|+||+++..+|+++|++||+.+++. .||+
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfll 795 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLL 795 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeee
Confidence 777999999999999999999999874 457999999999999999999999999987 8999
Q ss_pred eCCCCccc
Q 003540 799 SFLKDFFS 806 (812)
Q Consensus 799 SlrAGG~G 806 (812)
|+|||.+|
T Consensus 796 strag~lG 803 (1387)
T KOG1016|consen 796 STRAGSLG 803 (1387)
T ss_pred hhcccccc
Confidence 99999999
No 17
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=325.03 Aligned_cols=320 Identities=26% Similarity=0.344 Sum_probs=236.9
Q ss_pred CCCCcccc---cCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccC
Q 003540 325 MEPPSTLK---CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARG 401 (812)
Q Consensus 325 ~~~p~~l~---~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~G 401 (812)
..+|.-+. ..|.+||.+|++|+..... ...-
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws----------------------------------------------~~~~ 316 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWS----------------------------------------------PGVD 316 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccc----------------------------------------------cCCC
Confidence 34454444 8899999999999976532 2345
Q ss_pred ceeecCCCChhHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccc------------------------------
Q 003540 402 GILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYD------------------------------ 447 (812)
Q Consensus 402 GILADEMGLGKTIq~iaLI~~~~~----~~~~l~v~p~s~~~~w~~e~~~------------------------------ 447 (812)
+|||||||||||+|+|+++.+... +++.++++|.+...+|..++..
T Consensus 317 ~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~ 396 (696)
T KOG0383|consen 317 AILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDS 396 (696)
T ss_pred cccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhccccccccc
Confidence 999999999999999988766554 3467889999999999887643
Q ss_pred --------------------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceee
Q 003540 448 --------------------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLII 483 (812)
Q Consensus 448 --------------------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv 483 (812)
++|++|+++++.+++..........+.++++||+.-
T Consensus 397 ~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlq 476 (696)
T KOG0383|consen 397 SIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQ 476 (696)
T ss_pred ccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcch
Confidence 234444444444443333333344456678888873
Q ss_pred cccchhHHhhhh-----------hcCCccc-CCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCH
Q 003540 484 CPMTLLGQWNKL-----------IQKPYEE-GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551 (812)
Q Consensus 484 ~P~sll~qW~~~-----------i~~P~e~-~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~ 551 (812)
+-...|..--.| |..-|.+ ......+.++.+|.|.||||.|.++..+ +|+|++-++.++|++
T Consensus 477 nn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~------~P~Kte~i~~~~~~~ 550 (696)
T KOG0383|consen 477 NNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKP------MPLKTELIGRVELSP 550 (696)
T ss_pred hhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCchhhhhhhhhhccC------CCccceeEEEEecCH
Confidence 322111111111 1111111 2357788999999999999999999876 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCC
Q 003540 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGE 631 (812)
Q Consensus 552 ~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~ 631 (812)
.|++.|+.++.+-...+.. ..+..+.+..+|.||++|+||++.......
T Consensus 551 ~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n~~mel~K~~~hpy~~~~~e~~------------------------ 599 (696)
T KOG0383|consen 551 CQKKYYKKILTRNWQGLLA-------GVHQYSLLNIVMELRKQCNHPYLSPLEEPL------------------------ 599 (696)
T ss_pred HHHHHHHHHHcCChHHHhh-------cchhHHHHHHHHHHHHhhcCcccCcccccc------------------------
Confidence 9999999998876655443 123346788999999999999998531000
Q ss_pred CCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCC
Q 003540 632 DKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS 711 (812)
Q Consensus 632 ~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~ 711 (812)
..+..++-.. +
T Consensus 600 ---~~~~~~~~~~---l--------------------------------------------------------------- 610 (696)
T KOG0383|consen 600 ---EENGEYLGSA---L--------------------------------------------------------------- 610 (696)
T ss_pred ---ccchHHHHHH---H---------------------------------------------------------------
Confidence 0011111111 1
Q ss_pred ccccccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-C
Q 003540 712 RFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE-D 790 (812)
Q Consensus 712 ~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~-~ 790 (812)
.+.|+|+..|...+++++..||||+|||||+.+||++|+++...+ .|.|+||......|+++|++||. +
T Consensus 611 ---------~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~ 680 (696)
T KOG0383|consen 611 ---------IKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPG 680 (696)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCC
Confidence 135899999999999999999999999999999999999999999 99999999999999999999996 4
Q ss_pred CCcEEEEEeCCCCccc
Q 003540 791 NNIMVSDSSFLKDFFS 806 (812)
Q Consensus 791 ~~~~VlLlSlrAGG~G 806 (812)
.+-++||+|+||||+|
T Consensus 681 ~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 681 SNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccceEEEeecccccCC
Confidence 5678999999999998
No 18
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.97 E-value=1.4e-31 Score=288.04 Aligned_cols=296 Identities=22% Similarity=0.280 Sum_probs=207.9
Q ss_pred CCccCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCccccccc
Q 003540 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMAR 400 (812)
Q Consensus 321 ~l~~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~ 400 (812)
++.++-+| .+...|.|||++||.|-+.| +.
T Consensus 186 ~l~ev~d~-kLvs~LlPFQreGv~faL~R-------------------------------------------------gG 215 (689)
T KOG1000|consen 186 DLNEVMDP-KLVSRLLPFQREGVIFALER-------------------------------------------------GG 215 (689)
T ss_pred HHhhccCH-HHHHhhCchhhhhHHHHHhc-------------------------------------------------CC
Confidence 34344333 37788999999999999987 22
Q ss_pred CceeecCCCChhHHHHHHHHHhcccCCCCcccccCCCCCCCCccccc---------------------------------
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~~~~~~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
.++||||||||||||+|+.....+..++.+++||.++...|..++..
T Consensus 216 R~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~pi~vv~~~~D~~~~~~t~~~v~ivSye 295 (689)
T KOG1000|consen 216 RILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIHPIFVVDKSSDPLPDVCTSNTVAIVSYE 295 (689)
T ss_pred eEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhcccccceEEEecccCCccccccCCeEEEEEHH
Confidence 47999999999999999999999999999999999999999877644
Q ss_pred -----------------ccccCCcccccCccchhh--HHHhhhcceeccCCceeec-ccchhHHh-----------hhhh
Q 003540 448 -----------------ISDQSPNLMKKEPKSLSI--DKLIKQTNTLINGGTLIIC-PMTLLGQW-----------NKLI 496 (812)
Q Consensus 448 -----------------~~de~~~~~~~~~~~~~~--~~~~~~~~~~~~~gTlIv~-P~sll~qW-----------~~~i 496 (812)
|.||.|..+....+.... +.....++.++++|||-+. |..|..|- ..|-
T Consensus 296 ~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa 375 (689)
T KOG1000|consen 296 QLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFA 375 (689)
T ss_pred HHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHH
Confidence 455666555554444332 2234566888999999765 44343333 2222
Q ss_pred cCCcc---------cCCHHHHHHHHHHh-hhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHH
Q 003540 497 QKPYE---------EGDERGLKLVQSIL-KPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKV 566 (812)
Q Consensus 497 ~~P~e---------~~~~~~~~~L~~iL-~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~ 566 (812)
.+-.+ ...-..+..|+.+| +.+|+||+|+++..+ ||||..+|+++ ....+-..-+.+...+..
T Consensus 376 ~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q------LPpKrr~Vv~~-~~gr~da~~~~lv~~a~~ 448 (689)
T KOG1000|consen 376 IRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ------LPPKRREVVYV-SGGRIDARMDDLVKAAAD 448 (689)
T ss_pred HHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh------CCccceEEEEE-cCCccchHHHHHHHHhhh
Confidence 11111 11224567788777 578999999999887 99996555544 333333333333222211
Q ss_pred HHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchhhHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHH
Q 003540 567 KFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVE 646 (812)
Q Consensus 567 ~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 646 (812)
++..+ .. -+ +|
T Consensus 449 --------~t~~~----~~---e~-----~~------------------------------------------------- 459 (689)
T KOG1000|consen 449 --------YTKVN----SM---ER-----KH------------------------------------------------- 459 (689)
T ss_pred --------cchhh----hh---hh-----hh-------------------------------------------------
Confidence 00000 00 00 00
Q ss_pred HHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchh
Q 003540 647 ELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTK 726 (812)
Q Consensus 647 ~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsK 726 (812)
+|+....+ ...-+|
T Consensus 460 -------------------------------~~l~l~y~-----------------------------------~tgiaK 473 (689)
T KOG1000|consen 460 -------------------------------ESLLLFYS-----------------------------------LTGIAK 473 (689)
T ss_pred -------------------------------HHHHHHHH-----------------------------------Hhcccc
Confidence 11111000 013578
Q ss_pred HHHHHHHHHH----HccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 727 IAVLLKELEN----LCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 727 l~aLl~~L~~----l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
+.++.+.|.. .-+.+.|+|||.+.+.+||-|+..+.++++.++||||+++..+|+.++..|+.++.++|-++|+.|
T Consensus 474 ~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA 553 (689)
T KOG1000|consen 474 AAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITA 553 (689)
T ss_pred cHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEee
Confidence 8888888877 333489999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccc
Q 003540 803 DFFSLV 808 (812)
Q Consensus 803 GG~GL~ 808 (812)
||+||-
T Consensus 554 ~gvGLt 559 (689)
T KOG1000|consen 554 AGVGLT 559 (689)
T ss_pred ccccee
Confidence 999983
No 19
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.93 E-value=2.2e-27 Score=256.77 Aligned_cols=196 Identities=31% Similarity=0.466 Sum_probs=134.4
Q ss_pred cccCceeecCCCChhHHHHHHHHHhcccC---C---CCcccccCCCCCCCCccccc------------------------
Q 003540 398 MARGGILADAMGLGKTVMTIALLLTHSQR---G---GLSGIQSASQPSDGGIEGYD------------------------ 447 (812)
Q Consensus 398 ~~~GGILADEMGLGKTIq~iaLI~~~~~~---~---~~l~v~p~s~~~~w~~e~~~------------------------ 447 (812)
..+|||||||||||||+++|+++...... . ..++++|.+++.+|..|+..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcccccccccccccccccccccccccc
Confidence 57799999999999999999999853322 1 48999999999999777644
Q ss_pred -----------------------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccchhH--
Q 003540 448 -----------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLG-- 490 (812)
Q Consensus 448 -----------------------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sll~-- 490 (812)
++||+|..++..+..+.....+....+++++|||+.+....+.
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~ 183 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSL 183 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccc
Confidence 3455555554444444444445567889999999955433222
Q ss_pred -------------HhhhhhcCCcccCCHHHHHHHHHHhhhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHH
Q 003540 491 -------------QWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557 (812)
Q Consensus 491 -------------qW~~~i~~P~e~~~~~~~~~L~~iL~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y 557 (812)
.|.+.+..+...........|+.+++++++||++.++..+ ||++.+.++.|+||+.|+++|
T Consensus 184 l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~------lp~~~~~~~~~~ls~~q~~~Y 257 (299)
T PF00176_consen 184 LRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVEKE------LPPKIEHVINVELSPEQRELY 257 (299)
T ss_dssp HHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGCTT------STCEEEEEEEEGG-HHHHHHH
T ss_pred hheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhccccccc------CCceEEEEEEeCCCHHHHHHH
Confidence 2222222221122346788999999999999999998555 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCcccc
Q 003540 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601 (812)
Q Consensus 558 ~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~ 601 (812)
+.+.......+.... +...+++..++..+++|||+||||.|+
T Consensus 258 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 258 NELLKEARENLKQSS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHGGCCTT-T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 998887766544433 234467789999999999999999875
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=2.9e-23 Score=251.10 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHH-HhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-CcEEEEEeC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPL-SRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSSF 800 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L-~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~-~~~VlLlSl 800 (812)
.+.|+..|+++|+... ++|+|||+++..+++.|+..| ...||.++.|+|+|++.+|+++++.|++++ +++||| ++
T Consensus 477 ~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sT 553 (956)
T PRK04914 477 FDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CS 553 (956)
T ss_pred cCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-ec
Confidence 4789999999998753 789999999999999999999 567999999999999999999999999875 677765 55
Q ss_pred CCCcccc
Q 003540 801 LKDFFSL 807 (812)
Q Consensus 801 rAGG~GL 807 (812)
.+||.||
T Consensus 554 dvgseGl 560 (956)
T PRK04914 554 EIGSEGR 560 (956)
T ss_pred hhhccCC
Confidence 9999998
No 21
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.77 E-value=3.3e-19 Score=210.96 Aligned_cols=125 Identities=24% Similarity=0.317 Sum_probs=98.6
Q ss_pred CCCCccccccc-cccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHH
Q 003540 654 GECPICLEAFE-DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLK 732 (812)
Q Consensus 654 ~eC~iC~~~~~-~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~ 732 (812)
..|+||.+.+. .-.++.|+|.+|..|...+..+ ...||.|.... ...++|+.....
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~---------------------~dfg~kI~~v~~ 1210 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIK---------------------GDFGTKIDSVVI 1210 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhh---------------------hhhccCchhHHH
Confidence 34888888777 6778889999999998887654 45788877211 125789999988
Q ss_pred HHHHHccC--CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 733 ELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 733 ~L~~l~~~--~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
++..+.-+ -+||||||||+..||.++..+..++|.+.+..|+ ++-...+..|.+ +.|||+=++-||.||
T Consensus 1211 ~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GL 1281 (1394)
T KOG0298|consen 1211 AILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGL 1281 (1394)
T ss_pred HHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccc
Confidence 87776544 7899999999999999999999999998776653 455568888876 888888888888876
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.5e-16 Score=187.26 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|+.++..+++.....++|+|||++++..++.+...| +..+ ++|.|++++|.+++++|+.++.+.||++| ++|
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~~~--I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVg 552 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GKPF--IYGPTSQQERMQILQNFQHNPKVNTIFLS-KVG 552 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CCce--EECCCCHHHHHHHHHHHHhCCCccEEEEe-ccc
Confidence 46888887777765456999999999999998888877 3444 89999999999999999988778888887 999
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+.||
T Consensus 553 deGI 556 (732)
T TIGR00603 553 DTSI 556 (732)
T ss_pred cccc
Confidence 9997
No 23
>PF08797 HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes []. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 2L1I_A 3K2Y_C.
Probab=99.60 E-value=1.1e-15 Score=140.38 Aligned_cols=100 Identities=28% Similarity=0.361 Sum_probs=66.0
Q ss_pred eEeeeecEEeecc-----CcC-CCCCCEEEEEeecCCCCCCCCCCCCCcccccccccCCCCeEEEEEcCCCCccccCchh
Q 003540 98 VGWGDVPAMSTSK-----GRK-LRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHE 171 (812)
Q Consensus 98 ig~~~v~~~~t~~-----g~~-l~~g~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivr~~~~~~~eiGrlp~~ 171 (812)
||+|.+.+|+|+. +.. |++||.|.|+|+..++ .++ . +.....+.||++.+|.+||+||++
T Consensus 1 ~G~~~~~v~g~~~~~~~~~~~~l~~g~~v~L~re~~N~-----------~D~--n-Ai~v~~~~~~~~~~~~~iGylp~~ 66 (107)
T PF08797_consen 1 IGSFYFFVAGTRYYDGRAGRGKLKPGDRVVLVREPDNP-----------YDP--N-AIKVYTIDRFSNSRGREIGYLPRE 66 (107)
T ss_dssp --B--EEEE-CCCSTTHHCCTT--TTSEEEEEEETT-T-----------THC--C-CCCEEETT------BGCCCCCHHH
T ss_pred CcEEEEEEEEeecccccccccccCCCCEEEEEEcCCCC-----------CCc--c-cEEEEEeecccccCCCEEEEecHH
Confidence 7999999999999 776 9999999999975531 010 0 223467788888889999999999
Q ss_pred HHHHHhhhhcCCcEEEEEEEecCCC-ccCCCCeEEEEEEEE
Q 003540 172 WSRCLLPLVRDKKVEILGCCKSAPE-VLGIMDTIVLSIRVY 211 (812)
Q Consensus 172 ~a~~~~~L~d~~~~~~eg~~~~~~~-~l~~~~~~~l~~~~~ 211 (812)
+|+||+||||.+.+.|+|+|+++|. +++++++|+|+++||
T Consensus 67 ~a~~l~~Lld~~~~~~~~~v~~~~~~~~~~~~~i~l~~~~~ 107 (107)
T PF08797_consen 67 IAKWLSPLLDSGGVKFEGTVVFVPDKRLRIGIEIYLFLKCY 107 (107)
T ss_dssp HHHHHHHHCCT-TEEEEEEEECCCTTT-----EEEEEE---
T ss_pred HHHHHHHHHhCCCcEEEEEEEECCccccccCeEEEEEEECC
Confidence 9999999999999999999999998 999999999999998
No 24
>PRK13766 Hef nuclease; Provisional
Probab=99.41 E-value=8.4e-12 Score=153.10 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHHHc--cCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCC--------CCHHHHHHHHHHhhcCCC
Q 003540 723 ESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT--------LNQQQREKVLKQFSEDNN 792 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~--~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs--------~s~~~R~~~I~~F~~~~~ 792 (812)
.+.|+..|.++|+++. ..+.|+|||++|..+.+.|...|...|+.+.+++|. |++.+|.+++++|++..
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~- 423 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE- 423 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC-
Confidence 4689999999999876 348999999999999999999999999999999997 99999999999999874
Q ss_pred cEEEEEeCCCCcccc
Q 003540 793 IMVSDSSFLKDFFSL 807 (812)
Q Consensus 793 ~~VlLlSlrAGG~GL 807 (812)
+.|| +++.+++.|+
T Consensus 424 ~~vL-vaT~~~~eGl 437 (773)
T PRK13766 424 FNVL-VSTSVAEEGL 437 (773)
T ss_pred CCEE-EECChhhcCC
Confidence 5665 5667999987
No 25
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.1e-07 Score=105.83 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHHccC--CCeEEEEcCcHHHHHHHHHHHHhCCCCEE-EEeC--------CCCHHHHHHHHHHhhcCC
Q 003540 723 ESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSRNNIPFL-RLDG--------TLNQQQREKVLKQFSEDN 791 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~--~~KvVVFSQfts~LdlIe~~L~~~gi~~~-rlDG--------s~s~~~R~~~I~~F~~~~ 791 (812)
.-.|+..+.++|++..+. +.+||||+||..+.+.|-.+|...|+... ||-| +|++++..++|++|+.+.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 468999999999886633 89999999999999999999999998876 8877 599999999999999876
Q ss_pred CcEEEEEeCCCCcccc
Q 003540 792 NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 792 ~~~VlLlSlrAGG~GL 807 (812)
+.| |++|..|-+||
T Consensus 426 -~nV-LVaTSVgEEGL 439 (542)
T COG1111 426 -YNV-LVATSVGEEGL 439 (542)
T ss_pred -ceE-EEEcccccccC
Confidence 566 55778999987
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.85 E-value=7.4e-08 Score=110.44 Aligned_cols=262 Identities=18% Similarity=0.157 Sum_probs=169.0
Q ss_pred cCceeecCCCChhHHHHHHHHHhcccCCCCcccccCC-CCCCCCcccccccccCCc-------cccc---CccchhhHHH
Q 003540 400 RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS-QPSDGGIEGYDISDQSPN-------LMKK---EPKSLSIDKL 468 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI~~~~~~~~~l~v~p~s-~~~~w~~e~~~~~de~~~-------~~~~---~~~~~~~~~~ 468 (812)
+.||+.=.-|-|||+.++..|...... +++++|.. ++.+|...+......... .++. .-.+..+...
T Consensus 56 ~~gvivlpTGaGKT~va~~~~~~~~~~--~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl 133 (442)
T COG1061 56 RRGVIVLPTGAGKTVVAAEAIAELKRS--TLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTL 133 (442)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHhcCC--EEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccCCCcEEEEEhHHH
Confidence 358888899999999999999887765 77777764 456786444332221100 0000 0111222222
Q ss_pred hhh---cceeccCCceeec------ccchhHHhhhhhcCCc---------ccCCHHHHHHHHHHhhhhhhhccccccccC
Q 003540 469 IKQ---TNTLINGGTLIIC------PMTLLGQWNKLIQKPY---------EEGDERGLKLVQSILKPIMLRRTKSSTDRE 530 (812)
Q Consensus 469 ~~~---~~~~~~~gTlIv~------P~sll~qW~~~i~~P~---------e~~~~~~~~~L~~iL~p~~LRRtK~~v~~d 530 (812)
... .......-.+||. |..-...|...+..++ +..|......+...+.|++......+...+
T Consensus 134 ~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~ 213 (442)
T COG1061 134 ARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDE 213 (442)
T ss_pred hhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhC
Confidence 221 1111112344432 4444556655555555 244555677777888888888776554443
Q ss_pred CCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHhhcccCCccccccCCCcchh
Q 003540 531 GRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610 (812)
Q Consensus 531 G~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~ 610 (812)
|- |.|.....+++.++..++..|.....+........ +. +..
T Consensus 214 g~----Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~---~~-----------------------~~~-------- 255 (442)
T COG1061 214 GY----LAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR---GT-----------------------LRA-------- 255 (442)
T ss_pred CC----ccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh---hh-----------------------hhH--------
Confidence 33 88999999999999999999998766543321110 00 000
Q ss_pred hHHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCC
Q 003540 611 SDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSG 690 (812)
Q Consensus 611 ~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~ 690 (812)
.... .
T Consensus 256 ---~~~~----------------------------~-------------------------------------------- 260 (442)
T COG1061 256 ---ENEA----------------------------R-------------------------------------------- 260 (442)
T ss_pred ---HHHH----------------------------H--------------------------------------------
Confidence 0000 0
Q ss_pred CCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEE
Q 003540 691 LCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLR 770 (812)
Q Consensus 691 ~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~r 770 (812)
........|+..+..++.... .+.+++||++.....+.|...+...|+ ...
T Consensus 261 ---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~ 311 (442)
T COG1061 261 ---------------------------RIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEA 311 (442)
T ss_pred ---------------------------HHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEE
Confidence 000123577888888887655 789999999999999999999999988 889
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 771 LDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 771 lDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
++|.++..+|.+++++|.... + ..|++.+.+.+|+
T Consensus 312 it~~t~~~eR~~il~~fr~g~-~-~~lv~~~vl~EGv 346 (442)
T COG1061 312 ITGETPKEEREAILERFRTGG-I-KVLVTVKVLDEGV 346 (442)
T ss_pred EECCCCHHHHHHHHHHHHcCC-C-CEEEEeeecccee
Confidence 999999999999999999977 4 4566778888885
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.82 E-value=3.9e-08 Score=114.71 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.+...+.+++..+...+.+++||+..+...+.|...|...|++...++|.|+.++|.++++.|++.. ..|+|.|....|
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~~~l~ 406 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-GIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEcceec
Confidence 3445555666666556889999999999999999999999999999999999999999999998654 568888889999
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
.|+
T Consensus 407 eG~ 409 (501)
T PHA02558 407 TGI 409 (501)
T ss_pred ccc
Confidence 997
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.67 E-value=1.1e-08 Score=101.35 Aligned_cols=58 Identities=31% Similarity=0.704 Sum_probs=49.4
Q ss_pred ccCCCCCCccccccccccccCCcchhchhhhhhhhcC--------------CCCCCCCCCCccccccccccC
Q 003540 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT--------------PTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~--------------~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
.++..+|+||.+.+.++++|+|+|.||..||..|+.. .....||.||..++..+++.+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 3456899999999999999999999999999987642 135799999999999888765
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.45 E-value=7.5e-08 Score=72.62 Aligned_cols=40 Identities=53% Similarity=1.289 Sum_probs=32.3
Q ss_pred CCccccccccccccCCcchhchhhhhhhhcCCCC--CCCCCC
Q 003540 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTS--GLCPVC 695 (812)
Q Consensus 656 C~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~--~~CP~C 695 (812)
||||.+.+.+|+.++|||.||+.||..+++.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999987654 489987
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.44 E-value=9.9e-08 Score=78.70 Aligned_cols=51 Identities=29% Similarity=0.485 Sum_probs=46.3
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
..||||.+.|.+|++++|||.||++|+..+++. ...||.|+++++..+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhcee
Confidence 469999999999999999999999999999976 679999999998877654
No 31
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-07 Score=91.79 Aligned_cols=55 Identities=35% Similarity=0.858 Sum_probs=45.7
Q ss_pred ccCCCCCCcccccccc--ccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 650 KGEQGECPICLEAFED--AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~--~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
.+....||||++.... ++-|.|||.||+.||.+.+++ ..+||.|++.|+..+++.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccchhhhee
Confidence 3455789999997655 455899999999999998875 579999999999887765
No 32
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.8e-07 Score=97.00 Aligned_cols=54 Identities=30% Similarity=0.778 Sum_probs=47.7
Q ss_pred cCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
.....|.+|++.+.+|.-|||||.||-.||.++.....+ ||.||...+.++++-
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e--CPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE--CPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC--CCcccccCCCcceee
Confidence 345789999999999999999999999999999875444 999999999988764
No 33
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.29 E-value=2.5e-07 Score=72.71 Aligned_cols=47 Identities=45% Similarity=0.989 Sum_probs=41.1
Q ss_pred CCCCCccccccccccccCCcch-hchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 653 QGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~H~-~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
+..|+||.+...+.++++|+|. ||..|+..+++ ...+||.||++++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 3689999999999999999999 99999999988 78899999999863
No 34
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.28 E-value=2.8e-07 Score=68.48 Aligned_cols=38 Identities=47% Similarity=1.243 Sum_probs=33.0
Q ss_pred CCccccccccc-cccCCcchhchhhhhhhhcCCCCCCCCCC
Q 003540 656 CPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (812)
Q Consensus 656 C~iC~~~~~~~-~vt~C~H~~C~~Cl~~~~~~~~~~~CP~C 695 (812)
|+||.+.+.++ ++++|||.||++|+..+++. ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 68999999999999999987 4899987
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.1e-07 Score=101.09 Aligned_cols=56 Identities=39% Similarity=0.854 Sum_probs=50.5
Q ss_pred CCCCCccccccccccccCCcchhchhhhhhhhcCC---CCCCCCCCCccccccccccCC
Q 003540 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTP---TSGLCPVCRKTISRQDLITAP 708 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~---~~~~CP~Cr~~i~~~~l~~~~ 708 (812)
...||||+++..-++.|.|||.||-.||+.||... ....||.|+..|...||..+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 67999999999999999999999999999999866 357999999999998887653
No 36
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.24 E-value=6.9e-06 Score=90.80 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=58.2
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..+..=+++.....|+|+||||--.-.|.--... .|-+| |.|.+++.+|.+++..|+.++.+.-+.+| ++
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAik---l~Kpf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KV 598 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIK---LGKPF--IYGPTSQNERMKILQNFQTNPKVNTIFLS-KV 598 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH---cCCce--EECCCchhHHHHHHHhcccCCccceEEEe-ec
Confidence 46788777666666555699999999877665544433 35566 78999999999999999999988777777 55
Q ss_pred Ccc
Q 003540 803 DFF 805 (812)
Q Consensus 803 GG~ 805 (812)
|-.
T Consensus 599 gDt 601 (776)
T KOG1123|consen 599 GDT 601 (776)
T ss_pred cCc
Confidence 543
No 37
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.22 E-value=8e-07 Score=92.12 Aligned_cols=48 Identities=38% Similarity=0.818 Sum_probs=39.4
Q ss_pred cCCCCCCcccccccc--------ccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 651 GEQGECPICLEAFED--------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~--------~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
....+|+||++.+.+ +++++|+|.||.+||..+++. ...||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 345799999997654 367789999999999998763 579999999865
No 38
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.16 E-value=1.1e-05 Score=87.32 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=100.7
Q ss_pred cEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhccccc---------cHHHHHHHHHHhhcccCCccccccCCCcchhh
Q 003540 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILH---------NYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611 (812)
Q Consensus 541 ~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~---------~~~~il~~l~rLRq~c~HP~L~~~~~~~~~~~ 611 (812)
.++.+.+.|+..|+++|+.+.......+..+++...... ....+-..+.+|+.+|+||.|+...
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH------- 76 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDH------- 76 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--T-------
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccc-------
Confidence 467889999999999999999999999888875433221 2245666788999999999997431
Q ss_pred HHHHHHHHHhccCCCcccCCCCCCCchHHHHHHHHHHHccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCC
Q 003540 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL 691 (812)
Q Consensus 612 dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~ 691 (812)
|+...-. ..+..+
T Consensus 77 --------~mPk~ll----------~~e~~~------------------------------------------------- 89 (297)
T PF11496_consen 77 --------YMPKQLL----------LSEPAE------------------------------------------------- 89 (297)
T ss_dssp --------T--S-S-----------STTHHH-------------------------------------------------
T ss_pred --------cCccccc----------cchHHH-------------------------------------------------
Confidence 1110000 000000
Q ss_pred CCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHH-----ccCCCeEEEEcCcHHHHHHHHHHHHhCCC
Q 003540 692 CPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL-----CLSGSKSILFSQWTAFLDLLQIPLSRNNI 766 (812)
Q Consensus 692 CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l-----~~~~~KvVVFSQfts~LdlIe~~L~~~gi 766 (812)
.....|+|+..|-++|..+ ...+.++||.++-..++|+||..|.-.++
T Consensus 90 ---------------------------~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~ 142 (297)
T PF11496_consen 90 ---------------------------WLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKL 142 (297)
T ss_dssp ---------------------------HHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSS
T ss_pred ---------------------------HHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCe
Confidence 0113699999999999998 55589999999999999999999999999
Q ss_pred CEEEEeCCCCHHHHHHHH------------HHhh--cCCCcEEEEEeCCC
Q 003540 767 PFLRLDGTLNQQQREKVL------------KQFS--EDNNIMVSDSSFLK 802 (812)
Q Consensus 767 ~~~rlDGs~s~~~R~~~I------------~~F~--~~~~~~VlLlSlrA 802 (812)
.|.|++|..-..+....- .... ...++.|+|+++.-
T Consensus 143 ~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~ 192 (297)
T PF11496_consen 143 NYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQ 192 (297)
T ss_dssp EEEESSS--S--S---S----------------------SEEEEEEESS-
T ss_pred eEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCcc
Confidence 999999987655544333 0111 12467888888653
No 39
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.13 E-value=8e-07 Score=66.68 Aligned_cols=40 Identities=55% Similarity=1.239 Sum_probs=37.0
Q ss_pred CCcccccccccc-ccCCcchhchhhhhhhhcCCCCCCCCCC
Q 003540 656 CPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (812)
Q Consensus 656 C~iC~~~~~~~~-vt~C~H~~C~~Cl~~~~~~~~~~~CP~C 695 (812)
|+||.+.+.++. +++|+|.||..|+..+++......||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 9999999999999999997777889987
No 40
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.1e-06 Score=88.65 Aligned_cols=58 Identities=34% Similarity=0.719 Sum_probs=51.4
Q ss_pred ccCCCCCCccccccccccccCCcchhchhhhhhhhcCCC-CCCCCCCCccccccccccC
Q 003540 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~-~~~CP~Cr~~i~~~~l~~~ 707 (812)
++...+|.||++...||++|.|||.||=.||-.|+.... ...||+|+..++...++-+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 466789999999999999999999999999999998665 5677999999999888754
No 41
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=3.6e-06 Score=93.44 Aligned_cols=51 Identities=31% Similarity=0.734 Sum_probs=44.2
Q ss_pred CCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
....|+||.+.+.++++++|+|.||..|+..++.. ...||.|+..+....+
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKL 75 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccC
Confidence 34689999999999999999999999999999875 3589999999865443
No 42
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.06 E-value=2.2e-05 Score=73.57 Aligned_cols=83 Identities=28% Similarity=0.306 Sum_probs=74.7
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
+.|...+.+.+.+....+.|+|||+......+.+...|...++.+..++|+++..+|..++++|+++. ..+|+++.+.
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChh
Confidence 37999999999987667899999999999999999999999999999999999999999999999877 4566688999
Q ss_pred ccccc
Q 003540 804 FFSLV 808 (812)
Q Consensus 804 G~GL~ 808 (812)
|.|+=
T Consensus 89 ~~G~d 93 (131)
T cd00079 89 ARGID 93 (131)
T ss_pred hcCcC
Confidence 99973
No 43
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.04 E-value=9.9e-07 Score=67.33 Aligned_cols=41 Identities=51% Similarity=1.078 Sum_probs=34.0
Q ss_pred CCCCcccccc---ccccccCCcchhchhhhhhhhcCCCCCCCCCCC
Q 003540 654 GECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (812)
Q Consensus 654 ~eC~iC~~~~---~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr 696 (812)
.+|+||++.+ +..+.++|+|.||.+|+..|++.. ..||.||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 3799999966 467788999999999999999764 5999997
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.02 E-value=4.3e-06 Score=71.26 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=42.6
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
..||||.+.|.+|++++|||.||+.||..+++. ....||.|+++++..+++.
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceE
Confidence 579999999999999999999999999999986 6789999999999887754
No 45
>PHA02926 zinc finger-like protein; Provisional
Probab=97.97 E-value=6.3e-06 Score=82.69 Aligned_cols=53 Identities=30% Similarity=0.699 Sum_probs=40.7
Q ss_pred HHccCCCCCCcccccccc---------ccccCCcchhchhhhhhhhcCC----CCCCCCCCCcccc
Q 003540 648 LQKGEQGECPICLEAFED---------AVLTPCAHRLCRECLLGSWKTP----TSGLCPVCRKTIS 700 (812)
Q Consensus 648 l~~~~~~eC~iC~~~~~~---------~~vt~C~H~~C~~Cl~~~~~~~----~~~~CP~Cr~~i~ 700 (812)
.+...+.+|+||++.+.+ .++.+|.|.||..||..+.+.. ....||.||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 344566899999996422 5677999999999999988642 2467999999754
No 46
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.1e-06 Score=86.94 Aligned_cols=54 Identities=35% Similarity=0.782 Sum_probs=48.0
Q ss_pred cCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
..+..|+||++.++.+..|+|+|.||-.||...|.......||.||......++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 346789999999999999999999999999998888888899999998766554
No 47
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.90 E-value=8e-06 Score=62.33 Aligned_cols=41 Identities=41% Similarity=0.946 Sum_probs=35.5
Q ss_pred CCCcccccc---ccccccCCcchhchhhhhhhhcCCCCCCCCCCCc
Q 003540 655 ECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (812)
Q Consensus 655 eC~iC~~~~---~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~ 697 (812)
+|++|.+.. ..+.+|+|+|.||..|+.... .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 599999876 458899999999999998877 56789999985
No 48
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.83 E-value=1e-05 Score=61.08 Aligned_cols=44 Identities=45% Similarity=1.071 Sum_probs=36.0
Q ss_pred CCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 655 ECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 655 eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
+|+||.+.+.+++.+. |+|.||..|+..+++. ....||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 5999999885555554 9999999999998875 567899999753
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.73 E-value=8.5e-06 Score=61.59 Aligned_cols=37 Identities=41% Similarity=1.003 Sum_probs=22.7
Q ss_pred CCcccccccc----ccccCCcchhchhhhhhhhcCC--CCCCCC
Q 003540 656 CPICLEAFED----AVLTPCAHRLCRECLLGSWKTP--TSGLCP 693 (812)
Q Consensus 656 C~iC~~~~~~----~~vt~C~H~~C~~Cl~~~~~~~--~~~~CP 693 (812)
||||.+ +.+ |++++|||.||++|+....++. ..-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 766 9999999999999999988754 355665
No 50
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.68 E-value=1.2e-05 Score=84.52 Aligned_cols=49 Identities=35% Similarity=0.804 Sum_probs=43.7
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
.-|.||.+-+.-|++|||+|.||.-||..|+.. .+.||.|+.++...+|
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccchhhh
Confidence 359999999999999999999999999999874 6899999999876654
No 51
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.64 E-value=2.9e-05 Score=56.46 Aligned_cols=39 Identities=46% Similarity=1.206 Sum_probs=34.7
Q ss_pred CCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCC
Q 003540 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (812)
Q Consensus 656 C~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~C 695 (812)
|+||.+....+++++|+|.||..|+..+++ .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 889999989999999999999999999887 455679887
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.7e-05 Score=92.75 Aligned_cols=53 Identities=30% Similarity=0.770 Sum_probs=47.1
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccC
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
..||.|.+-..+.+++.|+|.||..|+...+.+ .+.+||.|...+..+|+..+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCccccccc
Confidence 579999999999999999999999999887754 57899999999999987643
No 53
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.62 E-value=0.0012 Score=78.21 Aligned_cols=83 Identities=22% Similarity=0.181 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHccC--CCeEEEEcCcHHHHHHHHHHHHh---CCCCEEEEeC--------CCCHHHHHHHHHHhhc
Q 003540 723 ESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLSR---NNIPFLRLDG--------TLNQQQREKVLKQFSE 789 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~--~~KvVVFSQfts~LdlIe~~L~~---~gi~~~rlDG--------s~s~~~R~~~I~~F~~ 789 (812)
...|++.|.++|.+.... ..++|||+.+....+.|-.+|.. .|++.--|-| +|++++.+++|+.|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 578999999998775444 78999999999999999998873 3566666666 7899999999999999
Q ss_pred CCCcEEEEEeCCCCcccc
Q 003540 790 DNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 790 ~~~~~VlLlSlrAGG~GL 807 (812)
+. ++|| ++|..|=+||
T Consensus 473 G~-~NvL-VATSV~EEGL 488 (746)
T KOG0354|consen 473 GE-INVL-VATSVAEEGL 488 (746)
T ss_pred CC-ccEE-EEecchhccC
Confidence 54 5665 4668888887
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.59 E-value=2.3e-05 Score=80.78 Aligned_cols=45 Identities=31% Similarity=0.666 Sum_probs=40.8
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
.-|-||.+-+.-+++|+|+|.||.-||..|+++ ++.||.||....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHH
Confidence 469999999999999999999999999999874 689999998764
No 55
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.59 E-value=3.8e-05 Score=62.19 Aligned_cols=47 Identities=32% Similarity=0.804 Sum_probs=25.9
Q ss_pred CCCCcccccccccc-ccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 654 GECPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 654 ~eC~iC~~~~~~~~-vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
.-|++|.+.+..|+ ++.|.|.||..|+.+.+.. .||.|..|.-.+|+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHHHHHH
Confidence 57999999999997 5789999999999887654 49999998766654
No 56
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=6e-05 Score=80.52 Aligned_cols=50 Identities=26% Similarity=0.700 Sum_probs=39.1
Q ss_pred CCCCccccc--ccc---ccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 654 GECPICLEA--FED---AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 654 ~eC~iC~~~--~~~---~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
..||+|... +.. ..+.+|||.||..|+...+... ...||.|+.++....+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-SGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-CCCCCCCCCccchhhc
Confidence 579999872 222 2444899999999999998653 4699999999988774
No 57
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.43 E-value=0.00043 Score=79.23 Aligned_cols=83 Identities=30% Similarity=0.304 Sum_probs=72.9
Q ss_pred cchhHHHHHHHHHHHcc-CCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCL-SGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~-~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
..+|...|.++|..... .+.|+|||+......|-|+..|.+.+++.+-|||..++.+|..+|+.|.++.. .||+ .|.
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~-~vLV-ATd 399 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS-PVLV-ATD 399 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc-ceEE-Ecc
Confidence 47899999999988763 37799999999999999999999999999999999999999999999999874 3555 557
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
.++-||
T Consensus 400 VAaRGL 405 (519)
T KOG0331|consen 400 VAARGL 405 (519)
T ss_pred cccccC
Confidence 777776
No 58
>PTZ00110 helicase; Provisional
Probab=97.32 E-value=0.00086 Score=79.28 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=74.0
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|...|.++|..+...+.|+|||++.....+.|...|...|+..+.++|.+++.+|.+++++|++.. +.| |++|.+
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~-~~I-LVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK-SPI-MIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC-CcE-EEEcch
Confidence 457888899999887667899999999999999999999999999999999999999999999999865 345 667789
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+.||
T Consensus 437 ~~rGI 441 (545)
T PTZ00110 437 ASRGL 441 (545)
T ss_pred hhcCC
Confidence 99997
No 59
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00013 Score=76.25 Aligned_cols=53 Identities=32% Similarity=0.617 Sum_probs=45.3
Q ss_pred CCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
..||+||...+.-|+.++|.|.||..||.....+ ....|++||.+|...=+++
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~i~~~ 59 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDSTIDFE 59 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcchhcc
Confidence 4699999999999999999999999999987764 3566999999998765544
No 60
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=7e-05 Score=57.99 Aligned_cols=47 Identities=43% Similarity=0.868 Sum_probs=41.6
Q ss_pred CCCCCccccccccccccCCcch-hchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 653 QGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~H~-~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
+.||.||++...+.++-.|+|. .|.+|-.+.++. ..+.||.||.+|.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 3799999998888899999998 699999988876 7889999999874
No 61
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=97.23 E-value=0.0011 Score=74.37 Aligned_cols=82 Identities=23% Similarity=0.186 Sum_probs=72.0
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
..+.|..+|+++|.+. -...+|||-......|.|.+.|.+.||+.++|||+-++.+|+.+|..|.+... .||+++ .
T Consensus 500 ~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~-dIlVaT-D 575 (673)
T KOG0333|consen 500 SEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTG-DILVAT-D 575 (673)
T ss_pred cchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCC-CEEEEe-c
Confidence 4688999999999875 46789999999999999999999999999999999999999999999999653 466554 7
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
++|-||
T Consensus 576 vAgRGI 581 (673)
T KOG0333|consen 576 VAGRGI 581 (673)
T ss_pred ccccCC
Confidence 777776
No 62
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00016 Score=78.12 Aligned_cols=43 Identities=56% Similarity=1.267 Sum_probs=39.7
Q ss_pred CCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCC
Q 003540 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr 696 (812)
+...|+||++.+.++.+++|+|.||..|+...+. ....||.||
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 4578999999999999999999999999999988 668999999
No 63
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0023 Score=75.01 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.|+..|..+|.... ..++|||+.-....+.|...|...|+....|+|.+++.+|.++++.|++. .++||++| .+++
T Consensus 259 ~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaT-Dvaa 334 (513)
T COG0513 259 EKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVAT-DVAA 334 (513)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEe-chhh
Confidence 59999999888643 34899999999999999999999999999999999999999999999954 46777766 6677
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
-||
T Consensus 335 RGi 337 (513)
T COG0513 335 RGL 337 (513)
T ss_pred ccC
Confidence 776
No 64
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.96 E-value=0.00029 Score=86.02 Aligned_cols=82 Identities=35% Similarity=0.439 Sum_probs=55.1
Q ss_pred hhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhh-------------ccccccHHHH
Q 003540 518 IMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQ-------------GRILHNYASI 584 (812)
Q Consensus 518 ~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~-------------g~~~~~~~~i 584 (812)
.+-|+-|..+..+ +.+||-++.+.+..+++.|-.+|+......-..+....+. +-.....+.+
T Consensus 599 ~l~R~~k~~v~~e----l~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i 674 (1394)
T KOG0298|consen 599 LLWRTFKSKVEHE----LGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAII 674 (1394)
T ss_pred hhhhhhhHHHHHH----hCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHH
Confidence 3445555555444 5699999999999999888888777655544444332221 1112234678
Q ss_pred HHHHHHhhcccCCcccccc
Q 003540 585 LELLLRLRQCCDHPFLVMS 603 (812)
Q Consensus 585 l~~l~rLRq~c~HP~L~~~ 603 (812)
+..++||||+||||..-.+
T Consensus 675 ~~~l~rLRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 675 LKWLLRLRQACCHPLVGNS 693 (1394)
T ss_pred HHHHHHHHHhhcccccccC
Confidence 9999999999999987654
No 65
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.92 E-value=0.00044 Score=58.90 Aligned_cols=42 Identities=38% Similarity=0.864 Sum_probs=32.8
Q ss_pred CCCCCcccccccc-------------ccccCCcchhchhhhhhhhcCCCCCCCCCCC
Q 003540 653 QGECPICLEAFED-------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (812)
Q Consensus 653 ~~eC~iC~~~~~~-------------~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr 696 (812)
+..|+||.+++.+ ....+|+|.|...||..+++... .||.||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence 3469999998733 23457999999999999997655 999998
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00026 Score=75.61 Aligned_cols=48 Identities=35% Similarity=0.899 Sum_probs=38.8
Q ss_pred CCCCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 653 QGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
+..|+||++-+.....|+ |+|.||.+||...++. ....||.||+.+-.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccc
Confidence 468999999887766664 9999999999887764 35789999997543
No 67
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.76 E-value=0.0052 Score=70.42 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|+..|..++.. ....|+|||+......+.|...|...|+....++|.|++++|.+++++|+++. +.||+ +|.+.
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~-~~vLV-aTdv~ 315 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD-LDILV-ATDVA 315 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC-CcEEE-Eechh
Confidence 5688888877765 23789999999999999999999999999999999999999999999999865 45654 55778
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+.||
T Consensus 316 ~rGi 319 (423)
T PRK04837 316 ARGL 319 (423)
T ss_pred hcCC
Confidence 8876
No 68
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=96.73 E-value=0.0011 Score=50.29 Aligned_cols=40 Identities=33% Similarity=0.403 Sum_probs=32.8
Q ss_pred hhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcCC
Q 003540 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (812)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 48 (812)
|+.+.+|.+|.|. ++-..++.|.+++.|+++||+.||+.+
T Consensus 1 ~e~i~~F~~iTg~--~~~~A~~~L~~~~wdle~Av~~y~~~~ 40 (43)
T PF14555_consen 1 DEKIAQFMSITGA--DEDVAIQYLEANNWDLEAAVNAYFDDG 40 (43)
T ss_dssp HHHHHHHHHHH-S--SHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHCc--CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5788999999996 444788889999999999999999963
No 69
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.71 E-value=0.0034 Score=53.29 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 756 LLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 756 lIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.|...|...++.+..++|.++.++|.++++.|++... .+|+++.+++.|+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi 51 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGL 51 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCc
Confidence 4677888889999999999999999999999998764 6778889999997
No 70
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00064 Score=73.29 Aligned_cols=50 Identities=36% Similarity=0.795 Sum_probs=41.8
Q ss_pred ccCCCCCCccccccccccccCCcch-hchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 650 KGEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~vt~C~H~-~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
++...||-||+....+.+++||.|. .|.+|..... -...+||.||+++..
T Consensus 287 ~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 287 SESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred ccCCCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 3556899999999999999999998 6999987654 235689999999864
No 71
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.66 E-value=0.0082 Score=69.90 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.+.|...|.+++.. ....|+|||++.....+.|...|...|+....++|.++..+|.++++.|+++. ++| |++|.+
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~-~~v-LvaT~~ 394 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGK-IRV-LVATDV 394 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCC-CcE-EEEccc
Confidence 35677777776654 23579999999999999999999999999999999999999999999999865 455 456799
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+.||
T Consensus 395 l~~GI 399 (475)
T PRK01297 395 AGRGI 399 (475)
T ss_pred cccCC
Confidence 99997
No 72
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.64 E-value=0.0071 Score=71.96 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|+..|+.+|.. ..+.|+|||+......+.|...|...|+....|+|.|++.+|.++++.|++.. ++||+ +|.+.
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~-~~VLV-aTdv~ 317 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ-LEILV-ATDVA 317 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCC-CeEEE-Eehhh
Confidence 5678888777764 34789999999999999999999999999999999999999999999999754 55655 55778
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+.||
T Consensus 318 arGI 321 (572)
T PRK04537 318 ARGL 321 (572)
T ss_pred hcCC
Confidence 8887
No 73
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=96.55 E-value=0.0034 Score=53.57 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 759 IPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 759 ~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.|+..|+.+..++|.++.++|++++++|++... .+|+++.+++.||
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi 47 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--RVLIATDILGEGI 47 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--SEEEESCGGTTSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--eEEEeeccccccc
Confidence 3688899999999999999999999999999876 4455669999997
No 74
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00094 Score=69.79 Aligned_cols=47 Identities=36% Similarity=0.754 Sum_probs=38.9
Q ss_pred CCCCCcccccc---ccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 653 QGECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 653 ~~eC~iC~~~~---~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
..||.||++.+ +..+++||.|.|...|+..|+- .-..+||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHh-hhcccCCccCCCCC
Confidence 37999999843 5578999999999999998874 23578999999875
No 75
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.48 E-value=0.012 Score=68.27 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|+.+|..+|... ...++|||+......+.+...|...|+....|+|.|++++|+.+++.|.+.. ++||+ +|.+.
T Consensus 227 ~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~-~~vLV-aTdv~ 302 (460)
T PRK11776 227 DERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS-CSVLV-ATDVA 302 (460)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CcEEE-Eeccc
Confidence 44888888888653 3678999999999999999999999999999999999999999999999755 56655 56788
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+.||
T Consensus 303 ~rGi 306 (460)
T PRK11776 303 ARGL 306 (460)
T ss_pred cccc
Confidence 8887
No 76
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.45 E-value=0.0053 Score=66.91 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=69.6
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
--|-..|+.+|++.. |.-+|||+.-..+-+.+.-.|+..|+....++|.|++..|..+++.|++... .| |++|..|
T Consensus 285 k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r-~i-Lv~TDVa 360 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGAR-SI-LVCTDVA 360 (476)
T ss_pred cccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCC-cE-EEecchh
Confidence 346678888888753 6899999999999999999999999999999999999999999999998762 34 5567888
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+-||
T Consensus 361 SRGL 364 (476)
T KOG0330|consen 361 SRGL 364 (476)
T ss_pred cccC
Confidence 8887
No 77
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.45 E-value=0.012 Score=67.71 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=66.7
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|+..|..+++. ....++|||+......+.|...|...|+....++|.|++.+|..++++|+++. ++||+ +|.+.
T Consensus 230 ~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~-~~vLV-aTd~~ 305 (434)
T PRK11192 230 EHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR-VNVLV-ATDVA 305 (434)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCC-CcEEE-Ecccc
Confidence 4566666666653 24689999999999999999999999999999999999999999999999754 55655 55778
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+.||
T Consensus 306 ~~Gi 309 (434)
T PRK11192 306 ARGI 309 (434)
T ss_pred ccCc
Confidence 8886
No 78
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.34 E-value=0.0014 Score=52.85 Aligned_cols=42 Identities=38% Similarity=0.713 Sum_probs=32.3
Q ss_pred CCCCCcccccccccccc-CCcchhchhhhhhhhcCCCCCCCCC
Q 003540 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPV 694 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt-~C~H~~C~~Cl~~~~~~~~~~~CP~ 694 (812)
...|||...++.+|+.. .|+|.|.++.|..|++......||.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46799999999999986 7999999999999998778899998
No 79
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.32 E-value=0.001 Score=70.84 Aligned_cols=49 Identities=29% Similarity=0.725 Sum_probs=40.8
Q ss_pred CCCCCCccccccccc-cccCCcchhchhhhhhhhcCCCCCCCCCCCcccccc
Q 003540 652 EQGECPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~-~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~ 702 (812)
....|.+|..-+.|+ +++.|.|.||+.||..|+.. ...||.|...+...
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCc
Confidence 456899999866654 57789999999999999986 78999998877654
No 80
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.30 E-value=0.0033 Score=54.44 Aligned_cols=33 Identities=30% Similarity=0.731 Sum_probs=28.3
Q ss_pred cCCcchhchhhhhhhhcCC-CCCCCCCCCccccc
Q 003540 669 TPCAHRLCRECLLGSWKTP-TSGLCPVCRKTISR 701 (812)
Q Consensus 669 t~C~H~~C~~Cl~~~~~~~-~~~~CP~Cr~~i~~ 701 (812)
-.|.|.|...||..++..+ ..+.||+||++...
T Consensus 50 g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 50 GKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3599999999999999876 47899999998643
No 81
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.016 Score=60.77 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
=|..+|.++-..+. =.+.|||+.-....|+|.+-+...++...-++|.|++++|.+++.+|++..+ +||| |+..=+
T Consensus 252 wKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~S-rvLi-tTDVwa 327 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKS-RVLI-TTDVWA 327 (400)
T ss_pred hhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCc-eEEE-Eechhh
Confidence 48889988887763 4689999999999999999999999999999999999999999999999876 6655 555554
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
-||
T Consensus 328 RGi 330 (400)
T KOG0328|consen 328 RGI 330 (400)
T ss_pred ccC
Confidence 443
No 82
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0022 Score=71.68 Aligned_cols=48 Identities=38% Similarity=0.829 Sum_probs=42.4
Q ss_pred CCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.+.+|.+|+..+..|+.|+|||.||..||...+. ....||.||.++..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc--cCCCCccccccccc
Confidence 4578999999999999999999999999988554 57899999998875
No 83
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0027 Score=65.90 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=42.4
Q ss_pred cCCCCCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 651 GEQGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
....+||+|.++...|.+.. |+|.+|.-|+.........-.||.|.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34579999999888887776 999999999998887777789999998654
No 84
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0028 Score=67.91 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=39.1
Q ss_pred ccCCCCCCcccccc-cc------------ccccCCcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 650 KGEQGECPICLEAF-ED------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 650 ~~~~~eC~iC~~~~-~~------------~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
..++..|.||++.| +. |--+||||.+..+|+..|++. +..||.||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence 34568999999973 32 357889999999999999874 67999999993
No 85
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0025 Score=67.85 Aligned_cols=49 Identities=33% Similarity=0.762 Sum_probs=42.8
Q ss_pred cCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.++.-||||.......+++||+|.-|..||..++-+ ...|+.|...+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceeee
Confidence 456789999999999999999999999999988764 5789999988764
No 86
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.07 E-value=0.025 Score=65.54 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.|...|..++.. ....++|||+......+.|...|...|+....|+|.+++++|.++++.|+++. ++||+ +|.+.+
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~iLV-aTdv~~ 306 (456)
T PRK10590 231 RKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD-IRVLV-ATDIAA 306 (456)
T ss_pred HHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCC-CcEEE-EccHHh
Confidence 344444444432 23579999999999999999999999999999999999999999999999864 56655 667888
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
.||
T Consensus 307 rGi 309 (456)
T PRK10590 307 RGL 309 (456)
T ss_pred cCC
Confidence 886
No 87
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=96.04 E-value=0.019 Score=67.59 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR-NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~-~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
..|...|.++|........++|||.......+.+...|.. .|+....|+|.+++++|.++++.|.++. ++|| ++|.+
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~-~~IL-VaTdv 427 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGE-VPVI-VATGV 427 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCC-CCEE-EEecH
Confidence 4577788888876544467899999999999999999975 6999999999999999999999999865 4564 56678
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+.||
T Consensus 428 l~rGi 432 (518)
T PLN00206 428 LGRGV 432 (518)
T ss_pred hhccC
Confidence 88886
No 88
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.03 E-value=0.028 Score=65.40 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.++..+++.|.+. ..+.++|||+......+.+...|...|+....|+|.|+.++|.+++++|.++. ++||+ +|.+.|
T Consensus 211 ~~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~-~~vLV-aT~~~~ 287 (470)
T TIGR00614 211 KILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE-IQVVV-ATVAFG 287 (470)
T ss_pred cHHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC-CcEEE-Eechhh
Confidence 3455566666542 24677899999999999999999999999999999999999999999999654 56665 557888
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
.||
T Consensus 288 ~GI 290 (470)
T TIGR00614 288 MGI 290 (470)
T ss_pred ccC
Confidence 887
No 89
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.03 E-value=0.0026 Score=68.72 Aligned_cols=52 Identities=33% Similarity=0.728 Sum_probs=44.8
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (812)
.-|-||.+.-.+.-+-||||..|..|+..|........||-||-.|.-.+-+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 4699999999999999999999999998876666689999999998765433
No 90
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=96.01 E-value=0.023 Score=68.06 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..|...+.+.|... .+.+.|||+......+.+...|...|+....|||+|+.++|..+++.|.++. +.| |++|.+.
T Consensus 209 ~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~-~~v-lVaT~a~ 284 (591)
T TIGR01389 209 NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD-VKV-MVATNAF 284 (591)
T ss_pred CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC-CcE-EEEechh
Confidence 34667777777653 2789999999999999999999999999999999999999999999999866 445 5566888
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
|.||
T Consensus 285 ~~GI 288 (591)
T TIGR01389 285 GMGI 288 (591)
T ss_pred hccC
Confidence 9887
No 91
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.96 E-value=0.024 Score=68.96 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.-.|..++++.+.++.+.|..||||+.....-+.|...|...||++..++|..+..+|..+.+.|+... | +++|..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~---V-tIATnm 506 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA---V-TIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc---E-EEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999866 4 556677
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 507 AGRGT 511 (908)
T PRK13107 507 AGRGT 511 (908)
T ss_pred cCCCc
Confidence 77773
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.92 E-value=0.029 Score=68.49 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=73.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.-.|..++++.+.++...|.-||||+.....-+.|...|.+.||++..|+|.+.+++|+.+.+.|+... | +++|..
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~---V-tIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA---V-TIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc---E-EEeccC
Confidence 467999999999999889999999999999999999999999999999999999999999999999874 4 556677
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 502 AGRGt 506 (896)
T PRK13104 502 AGRGT 506 (896)
T ss_pred ccCCc
Confidence 77774
No 93
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.89 E-value=0.0031 Score=62.07 Aligned_cols=44 Identities=32% Similarity=0.786 Sum_probs=37.3
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
.-|.||-+....|++|.|||.||..|...-++ ..+.|..|.+..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQ--KGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhc--cCCcceecchhh
Confidence 57999999999999999999999999766444 467899998753
No 94
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0027 Score=74.93 Aligned_cols=50 Identities=28% Similarity=0.638 Sum_probs=43.1
Q ss_pred CCCCCCcccccccc-----ccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccc
Q 003540 652 EQGECPICLEAFED-----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (812)
Q Consensus 652 ~~~eC~iC~~~~~~-----~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~ 703 (812)
....|+||.+.+.. +...+|+|.||..|+..+++. +..||.||..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhhccc
Confidence 45789999998888 799999999999999999986 789999999554443
No 95
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.87 E-value=0.036 Score=66.82 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=73.0
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
..+++..|++.|+.+...+.++|||+.-....+.|...|...|+.+..++|.++..+|.+++++|..+. +.| |+++..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~-i~V-LV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE-FDV-LVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC-ceE-EEEcCh
Confidence 356888999999998888999999999999999999999999999999999999999999999998755 555 456677
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+.|+
T Consensus 502 L~rGf 506 (655)
T TIGR00631 502 LREGL 506 (655)
T ss_pred hcCCe
Confidence 77776
No 96
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=95.83 E-value=0.033 Score=67.24 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.++...+..||||+......+.+...|.+.|+++..++|.+.+++|..+..+|+.. .| +++|..
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~V-lIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---AV-TVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---eE-EEEccc
Confidence 46799999999998877899999999999999999999999999999999999988887776666544 45 567778
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 482 AgRGt 486 (762)
T TIGR03714 482 AGRGT 486 (762)
T ss_pred ccccc
Confidence 88775
No 97
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.83 E-value=0.033 Score=66.95 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..+|.++|.. ....++|||+.-....+.|...|...|+....++|.|++++|.+++++|++.. +.| |++|.+
T Consensus 229 ~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~-~~I-LVATdv 304 (629)
T PRK11634 229 GMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR-LDI-LIATDV 304 (629)
T ss_pred hhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCC-CCE-EEEcch
Confidence 35688888888865 23579999999999999999999999999999999999999999999999865 444 567788
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+.||
T Consensus 305 ~arGI 309 (629)
T PRK11634 305 AARGL 309 (629)
T ss_pred HhcCC
Confidence 88886
No 98
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=95.79 E-value=0.035 Score=66.67 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.++..++..+.. ..+.++|||+......+.+...|...|+....|+|.|+.++|.++++.|..+. +.|| ++|.+.|
T Consensus 222 ~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~-~~VL-VaT~a~~ 297 (607)
T PRK11057 222 KPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD-LQIV-VATVAFG 297 (607)
T ss_pred chHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCC-CCEE-EEechhh
Confidence 345566666654 34789999999999999999999999999999999999999999999999765 5565 5567888
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
.||
T Consensus 298 ~GI 300 (607)
T PRK11057 298 MGI 300 (607)
T ss_pred ccC
Confidence 886
No 99
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.78 E-value=0.033 Score=66.44 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=67.1
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|+.+|++.+.++...+..+|||+......+.|...|...|+++..|+|.+ .+|++.+..|...+. .| +++|..
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~--~~rE~~ii~~ag~~g-~V-lVATdm 530 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQ--DAEEAAIVARAGQRG-RI-TVATNM 530 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCc--HHHHHHHHHHcCCCC-cE-EEEccc
Confidence 46799999999998766678899999999999999999999999999999985 466666666765443 34 567788
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 531 AgRGt 535 (656)
T PRK12898 531 AGRGT 535 (656)
T ss_pred hhccc
Confidence 88885
No 100
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.75 E-value=0.037 Score=66.86 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..++..|++.|..+...+.++|||+......+.|...|...|+++..++|.+++.+|..++++|..+. +.| |+++...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~-i~v-lV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-FDV-LVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC-ceE-EEEeCHH
Confidence 46788999999998888999999999999999999999999999999999999999999999998754 445 4566666
Q ss_pred ccccc
Q 003540 804 FFSLV 808 (812)
Q Consensus 804 G~GL~ 808 (812)
+.|+-
T Consensus 507 ~rGfd 511 (652)
T PRK05298 507 REGLD 511 (652)
T ss_pred hCCcc
Confidence 67763
No 101
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0046 Score=64.92 Aligned_cols=45 Identities=31% Similarity=0.713 Sum_probs=39.0
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
.-|-||..+..+|++|.|+|.||..|....++ ...+|+.|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc--cCCcceecccccc
Confidence 46999999999999999999999999876554 4579999998764
No 102
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.62 E-value=0.042 Score=66.90 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..+|++.+.+....+.++|||+......+.+...|.+.|+++..|+|.+..++|..+..+|+.. .| +++|..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~V-lIATdm 485 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---AV-TVATNM 485 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---eE-EEEccc
Confidence 46799999999988767799999999999999999999999999999999999988888777777643 45 466688
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 486 AgRG~ 490 (790)
T PRK09200 486 AGRGT 490 (790)
T ss_pred hhcCc
Confidence 88875
No 103
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0062 Score=66.43 Aligned_cols=53 Identities=26% Similarity=0.715 Sum_probs=41.8
Q ss_pred CCCCcccccc---ccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccC
Q 003540 654 GECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 654 ~eC~iC~~~~---~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
..|.||+|.. +...++||.|.|...||..|+... ...||.|+..+....-.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~~~~~~~ 285 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRTDSGSEP 285 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCCCCCCCC
Confidence 4899999944 557789999999999999998654 5669999997765544443
No 104
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=95.51 E-value=0.046 Score=66.82 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHc-cCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH-----HHHHHhhc----CC---
Q 003540 725 TKIAVLLKELENLC-LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE-----KVLKQFSE----DN--- 791 (812)
Q Consensus 725 sKl~aLl~~L~~l~-~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~-----~~I~~F~~----~~--- 791 (812)
.|+..++..|..+. ..+.++|||+.-....+.|...|...++ ..|+|.|++.+|. +++++|.+ ..
T Consensus 255 ~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~ 332 (844)
T TIGR02621 255 KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRAR 332 (844)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccc
Confidence 35555555554433 3478999999999999999999998887 8899999999999 88999986 21
Q ss_pred --CcEEEEEeCCCCcccc
Q 003540 792 --NIMVSDSSFLKDFFSL 807 (812)
Q Consensus 792 --~~~VlLlSlrAGG~GL 807 (812)
.-..+|++|.+.+.||
T Consensus 333 ~~~g~~ILVATdVaerGL 350 (844)
T TIGR02621 333 PQQGTVYLVCTSAGEVGV 350 (844)
T ss_pred ccccceEEeccchhhhcc
Confidence 1135688999999998
No 105
>PTZ00424 helicase 45; Provisional
Probab=95.47 E-value=0.062 Score=60.93 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.|...+..++... ...|+|||+......+.+...|...++....++|.++.++|..+++.|+++. ++|| ++|.+.+
T Consensus 253 ~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~-~~vL-vaT~~l~ 328 (401)
T PTZ00424 253 WKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS-TRVL-ITTDLLA 328 (401)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CCEE-EEccccc
Confidence 3556666555442 3579999999999999999999999999999999999999999999999755 5565 5667888
Q ss_pred ccc
Q 003540 805 FSL 807 (812)
Q Consensus 805 ~GL 807 (812)
.||
T Consensus 329 ~Gi 331 (401)
T PTZ00424 329 RGI 331 (401)
T ss_pred CCc
Confidence 887
No 106
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.38 E-value=0.0097 Score=58.97 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=32.3
Q ss_pred cCceeecCCCChhHHHHHHHHHhcccCCCCcccccC-CCCCCCCccc
Q 003540 400 RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEG 445 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI~~~~~~~~~l~v~p~-s~~~~w~~e~ 445 (812)
+.++|...+|-|||+.+++++..... ..++++|. ++..+|..++
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~--~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELAR--KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHC--EEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcChhhhhhhhcccc--ceeEecCHHHHHHHHHHHH
Confidence 45899999999999999998887766 56667765 3444454443
No 107
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.38 E-value=0.071 Score=64.19 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|+.++++.+.+....+..||||+......+.|...|.+.|+++..|+|. +.+|++.|..|...+. .|+++ |..
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g-~VtIA-Tnm 462 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG-AVTIA-TNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc-eEEEE-ecc
Confidence 3579999999998888889999999999999999999999999999999999 8899999999987664 56554 466
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 463 AgRGt 467 (745)
T TIGR00963 463 AGRGT 467 (745)
T ss_pred ccCCc
Confidence 66663
No 108
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=95.36 E-value=0.04 Score=60.05 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=70.0
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
+.-+|+..|++.|++ ..-+|+||+.-..-.|-|.++|--.|+..+-++|.-.+.+|..+|+.|+.+.. .||+. |.
T Consensus 405 kqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK-DVLVA-TD 479 (610)
T KOG0341|consen 405 KQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK-DVLVA-TD 479 (610)
T ss_pred HhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC-ceEEE-ec
Confidence 457899998888764 47899999999999999999999999999999999999999999999999875 46555 46
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
.++-||
T Consensus 480 VASKGL 485 (610)
T KOG0341|consen 480 VASKGL 485 (610)
T ss_pred chhccC
Confidence 666665
No 109
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.31 E-value=0.049 Score=61.84 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHccC--CCeEEEEcCcHHHHHHHHHHH----Hh------------------CCCCEEEEeCCCCHHH
Q 003540 724 STKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL----SR------------------NNIPFLRLDGTLNQQQ 779 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~--~~KvVVFSQfts~LdlIe~~L----~~------------------~gi~~~rlDGs~s~~~ 779 (812)
--.+.+|...|.+..+. ..|+|||-.-..+.+.=-..| .. .+.+|+|++|+|++.+
T Consensus 406 KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 406 KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 45667888888775443 668899876666555433332 22 1557999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 780 REKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 780 R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
|..+...|..+... | |++|.++|-||
T Consensus 486 Rts~f~~Fs~~~~~-V-LLcTDVAaRGL 511 (708)
T KOG0348|consen 486 RTSVFQEFSHSRRA-V-LLCTDVAARGL 511 (708)
T ss_pred HHHHHHhhccccce-E-EEehhhhhccC
Confidence 99999999998875 5 45667777776
No 110
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=95.23 E-value=0.038 Score=67.33 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|+..|+++|.+.. +..|+|||++-..-+|.|-..|.+.|+...-++|..++.+|...|+.|+++.- .||+-|..
T Consensus 596 e~eKf~kL~eLl~e~~-e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~--~LLvaTsv 672 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERY-EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV--NLLVATSV 672 (997)
T ss_pred chHHHHHHHHHHHHHh-hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc--eEEEehhh
Confidence 5889999999998864 48899999999999999999999999999999999999999999999999873 45555566
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+-||
T Consensus 673 varGL 677 (997)
T KOG0334|consen 673 VARGL 677 (997)
T ss_pred hhccc
Confidence 66665
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.19 E-value=0.082 Score=64.46 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.++...+..||||+......+.|...|.+.|+++..|+|. +.+|++.|..|...+. .|+++| ..
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g-~VtIAT-Nm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG-AVTIAT-NM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc-eEEEec-cc
Confidence 4579999999999887889999999999999999999999999999999996 8899999999998775 565554 66
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 488 AGRGt 492 (830)
T PRK12904 488 AGRGT 492 (830)
T ss_pred ccCCc
Confidence 66663
No 112
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.18 E-value=0.096 Score=58.46 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCC--CEEEEeCCCCHHHHHH----HHHHhhcCCCcEEEEE
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNI--PFLRLDGTLNQQQREK----VLKQFSEDNNIMVSDS 798 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi--~~~rlDGs~s~~~R~~----~I~~F~~~~~~~VlLl 798 (812)
.|...+.++++.+ ..+.|+|||+......+.+...|...+. ....++|.++..+|.+ +++.|.+.. .+| |+
T Consensus 207 ~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~-~~i-lv 283 (358)
T TIGR01587 207 GEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE-KFV-IV 283 (358)
T ss_pred cCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC-CeE-EE
Confidence 4556666666543 4578999999999999999999988776 4899999999999976 488998754 344 66
Q ss_pred eCCCCcccc
Q 003540 799 SFLKDFFSL 807 (812)
Q Consensus 799 SlrAGG~GL 807 (812)
+|.+.+.||
T Consensus 284 aT~~~~~Gi 292 (358)
T TIGR01587 284 ATQVIEASL 292 (358)
T ss_pred ECcchhcee
Confidence 778888887
No 113
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.0096 Score=65.30 Aligned_cols=51 Identities=33% Similarity=0.775 Sum_probs=40.2
Q ss_pred ccCCCCCCcccccccccc--------ccCCcchhchhhhhhhhcCCC-----CCCCCCCCcccc
Q 003540 650 KGEQGECPICLEAFEDAV--------LTPCAHRLCRECLLGSWKTPT-----SGLCPVCRKTIS 700 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~--------vt~C~H~~C~~Cl~~~~~~~~-----~~~CP~Cr~~i~ 700 (812)
.....+|.||++.+.+.. +.+|-|.||..|+..+-.... ...||.||.+.+
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356789999999665544 366999999999998874433 689999999865
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.15 E-value=0.084 Score=64.87 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..+|++.+.++...+..||||+.+....+.|...|...||++..|++ .+.+|++.|-.|...++ .|++ +|.-
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g-~VtI-ATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG-AVTI-ATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC-eEEE-eccC
Confidence 357999999999998888999999999999999999999999999999998 58999999999998775 4655 5566
Q ss_pred Cccc
Q 003540 803 DFFS 806 (812)
Q Consensus 803 GG~G 806 (812)
+|-|
T Consensus 656 AGRG 659 (1025)
T PRK12900 656 AGRG 659 (1025)
T ss_pred cCCC
Confidence 6666
No 115
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.08 E-value=0.016 Score=44.77 Aligned_cols=43 Identities=35% Similarity=0.930 Sum_probs=21.7
Q ss_pred CCccccccc--cccccC--CcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 656 CPICLEAFE--DAVLTP--CAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 656 C~iC~~~~~--~~~vt~--C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
||+|.++++ +..+.| |++.+|+.|.....+ ....+||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-NEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-SS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-ccCCCCCCCCCCC
Confidence 789988763 334444 899999999887765 3589999999875
No 116
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.011 Score=65.65 Aligned_cols=47 Identities=38% Similarity=0.843 Sum_probs=37.4
Q ss_pred CCCCCcccccccc-----------------ccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 653 QGECPICLEAFED-----------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 653 ~~eC~iC~~~~~~-----------------~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
...|+||+.+++- -++|||.|.|...|++.++.. -...||.||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 4689999986531 347899999999999998863 2368999999874
No 117
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.97 E-value=0.082 Score=57.35 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHHcc-CCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCL-SGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~-~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
...|=..|+..|+.... ++.-++||.|-+..-.+|...|+..++...-+|+.|++++|-.++.+|+.+. .+|||++ .
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~-~~iliaT-D 312 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA-ARILIAT-D 312 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC-ccEEEEe-c
Confidence 35677889999988766 4778999999999999999999999999999999999999999999999876 4676655 6
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
+++-||
T Consensus 313 VAsRGL 318 (442)
T KOG0340|consen 313 VASRGL 318 (442)
T ss_pred hhhcCC
Confidence 666665
No 118
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.91 E-value=0.091 Score=57.33 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=68.6
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|.++|.++..-+ . --..|||++-..+..+|-..|...|.....++|.+...+|.+++++|++... +| |++|..
T Consensus 314 ~~~K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~-kV-LitTnV 389 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE-KV-LITTNV 389 (477)
T ss_pred hhhHHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc-eE-EEEech
Confidence 357999999955432 2 2478999999999999999999999999999999999999999999999774 45 567787
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
.+-||
T Consensus 390 ~ARGi 394 (477)
T KOG0332|consen 390 CARGI 394 (477)
T ss_pred hhccc
Confidence 77776
No 119
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.63 E-value=0.019 Score=64.88 Aligned_cols=53 Identities=40% Similarity=0.926 Sum_probs=45.0
Q ss_pred CCCCCCcccccccccccc-CCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 652 EQGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt-~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
+...|++|...+.+|+.+ .|+|.||..|+..+... .+.||.|+..+...+.+.
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQAEELP 73 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchhhccC
Confidence 446899999999999995 99999999999988776 899999998876655443
No 120
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=94.62 E-value=0.097 Score=65.49 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=63.3
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
..+.+.+... ..+.+.|||+....-.+.+...|...|+....|+|+|+.++|..++++|..+. ++||+ .|-|.|.||
T Consensus 668 e~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Ge-i~VLV-ATdAFGMGI 744 (1195)
T PLN03137 668 EDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDE-INIIC-ATVAFGMGI 744 (1195)
T ss_pred HHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCC-CcEEE-EechhhcCC
Confidence 4444444331 12568999999999999999999999999999999999999999999999876 55654 568889997
No 121
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.56 E-value=0.12 Score=62.74 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.+....+..||||+.+....+.|...|.+.|+++..|+|.+..++++.+..+|+... | +++|..
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~---V-tIATnm 497 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA---V-TIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce---E-EEEecc
Confidence 457999999999988788999999999999999999999999999999999988666666666665443 5 445566
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
+|-|+
T Consensus 498 AGRGt 502 (796)
T PRK12906 498 AGRGT 502 (796)
T ss_pred ccCCC
Confidence 66663
No 122
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.012 Score=60.92 Aligned_cols=61 Identities=16% Similarity=0.446 Sum_probs=50.3
Q ss_pred cCCCCCCcccccccc----------ccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCC
Q 003540 651 GEQGECPICLEAFED----------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGS 711 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~----------~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~ 711 (812)
.++.-|.+|...++. ..-+.|.|.|...||..+.--+..+.||.|.+.++...++.-|-+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWek 292 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEK 292 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCcccc
Confidence 356789999875433 3466799999999999999888899999999999999888876543
No 123
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=93.86 E-value=0.11 Score=58.73 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
..++..|..+|++.... -||+||..--.+.++....|+...+++.-|||..++..|..+..+|.+..+ .+|+.+.++
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes--gIL~cTDVa 390 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES--GILVCTDVA 390 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc--ceEEecchh
Confidence 45578888998876433 899999999999999999999999999999999999999999999999886 445666888
Q ss_pred cccc
Q 003540 804 FFSL 807 (812)
Q Consensus 804 G~GL 807 (812)
+-|+
T Consensus 391 ARGl 394 (543)
T KOG0342|consen 391 ARGL 394 (543)
T ss_pred hccC
Confidence 8776
No 124
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.81 E-value=0.073 Score=55.99 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=38.3
Q ss_pred CCCCCcccc---ccccccccCCcchhchhhhhhhhcC---------------------CCCCCCCCCCcccccc
Q 003540 653 QGECPICLE---AFEDAVLTPCAHRLCRECLLGSWKT---------------------PTSGLCPVCRKTISRQ 702 (812)
Q Consensus 653 ~~eC~iC~~---~~~~~~vt~C~H~~C~~Cl~~~~~~---------------------~~~~~CP~Cr~~i~~~ 702 (812)
...|.||+- .-...++|+|.|.+..-|+..|+.. +....||+||.+|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 467988876 3345789999999999999888741 1256899999997643
No 125
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.76 E-value=0.034 Score=58.14 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=35.9
Q ss_pred CCCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCc
Q 003540 654 GECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRK 697 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~ 697 (812)
..||.|..-+..++-|+ |+|.||.+||...+-. ..-.||+|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 46999999999999996 8999999999865532 4678999976
No 126
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.72 E-value=0.17 Score=56.80 Aligned_cols=81 Identities=25% Similarity=0.258 Sum_probs=66.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR--NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~--~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
..-|+..|+++|.. ....|+|||=.--...++....|.. ..+.++-+||.|++++|.+++++|.+.++ .| |++|
T Consensus 239 a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~-~v-l~~T 314 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN-GV-LFCT 314 (567)
T ss_pred HHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC-ce-EEee
Confidence 46799999999987 4578999998877888888877766 47899999999999999999999999554 34 5566
Q ss_pred CCCcccc
Q 003540 801 LKDFFSL 807 (812)
Q Consensus 801 rAGG~GL 807 (812)
..++-||
T Consensus 315 DVaARGl 321 (567)
T KOG0345|consen 315 DVAARGL 321 (567)
T ss_pred hhhhccC
Confidence 7777776
No 127
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.022 Score=61.75 Aligned_cols=42 Identities=43% Similarity=0.933 Sum_probs=34.6
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
.-|.+|.+...+.+..||||..| |..-+.. -+.||.||+.|.
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~---l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH---LPQCPVCRQRIR 347 (355)
T ss_pred CceEEecCCccceeeecCCcEEE--chHHHhh---CCCCchhHHHHH
Confidence 57999999999999999999988 8765433 345999999874
No 128
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.051 Score=55.60 Aligned_cols=57 Identities=26% Similarity=0.522 Sum_probs=48.0
Q ss_pred CCCCCCcccccccc----ccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCC
Q 003540 652 EQGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG 710 (812)
Q Consensus 652 ~~~eC~iC~~~~~~----~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~ 710 (812)
....||+|.+.+.+ .++-+|+|.+|.+|++..++. ...||+|.++++.++++.+..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plkdrdiI~LqrG 280 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLKDRDIIGLQRG 280 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCcccceEeeecc
Confidence 44679999886544 668899999999999999874 5789999999999999988654
No 129
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=93.45 E-value=0.18 Score=61.96 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHccCCCeEEEEcCcHHHHHHHHHHHHhC--------CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcc
Q 003540 734 LENLCLSGSKSILFSQWTAFLDLLQIPLSRN--------NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFF 805 (812)
Q Consensus 734 L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~--------gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~ 805 (812)
|..+...+.|+|||+......+.|...|... +....-|+|++++++|.++.++|.+.. ++| |++|.+.+.
T Consensus 264 l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~-i~v-LVaTd~ler 341 (742)
T TIGR03817 264 LADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE-LLG-VATTNALEL 341 (742)
T ss_pred HHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC-ceE-EEECchHhc
Confidence 3333345789999999999999999887653 566778999999999999999999865 445 578888888
Q ss_pred cc
Q 003540 806 SL 807 (812)
Q Consensus 806 GL 807 (812)
||
T Consensus 342 GI 343 (742)
T TIGR03817 342 GV 343 (742)
T ss_pred cC
Confidence 86
No 130
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.30 E-value=0.2 Score=56.75 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.-.|+..|+++|-+...+ -|||||-.=....+-|+..|...||....++|.|.+.+|.++|.+|+.... .||+++ ..
T Consensus 451 ~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~-~Vlvat-Dv 527 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK-PVLVAT-DV 527 (731)
T ss_pred cHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC-ceEEEe-eH
Confidence 568999999999887444 489999999999999999999999999999999999999999999998764 365554 34
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
++.||
T Consensus 528 aargl 532 (731)
T KOG0339|consen 528 AARGL 532 (731)
T ss_pred hhcCC
Confidence 44443
No 131
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.039 Score=46.21 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=33.6
Q ss_pred CCCcccccccc-cccc-CCcchhchhhhhhhhcCC-CCCCCCCCCcccc
Q 003540 655 ECPICLEAFED-AVLT-PCAHRLCRECLLGSWKTP-TSGLCPVCRKTIS 700 (812)
Q Consensus 655 eC~iC~~~~~~-~~vt-~C~H~~C~~Cl~~~~~~~-~~~~CP~Cr~~i~ 700 (812)
.||-|.-|-++ |.+. .|.|.|-..||..++..+ .+..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45555443333 4444 499999999999999765 4789999999754
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.20 E-value=0.11 Score=51.55 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=25.4
Q ss_pred cCceeecCCCChhHHHHHHHHHhcccC---CCCccccc
Q 003540 400 RGGILADAMGLGKTVMTIALLLTHSQR---GGLSGIQS 434 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI~~~~~~---~~~l~v~p 434 (812)
.++++...+|.|||..++.++...... ...++++|
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 358999999999999777776655443 34566666
No 133
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.13 E-value=0.042 Score=65.44 Aligned_cols=50 Identities=26% Similarity=0.738 Sum_probs=40.0
Q ss_pred cCCCCCCccccccc--ccc-----ccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 651 GEQGECPICLEAFE--DAV-----LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 651 ~~~~eC~iC~~~~~--~~~-----vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
....||+||...++ +-. -..|.|.|...|+-.|++.....+||.||..|+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45689999998433 322 234999999999999999999999999997664
No 134
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.10 E-value=0.17 Score=55.73 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.+-|+..+-..+.. ...++|+|||..-.-+.|-|..-|.-.||..--++|.-.+.+|+.+|+.|++.. ++||+.+ ..
T Consensus 448 d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~-vrILvaT-Dl 524 (629)
T KOG0336|consen 448 DSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE-VRILVAT-DL 524 (629)
T ss_pred cHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc-eEEEEEe-ch
Confidence 57788555555544 466999999999999999999999999999999999999999999999999876 6776654 55
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
++-||
T Consensus 525 aSRGl 529 (629)
T KOG0336|consen 525 ASRGL 529 (629)
T ss_pred hhcCC
Confidence 55554
No 135
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.00 E-value=0.22 Score=56.78 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=70.3
Q ss_pred ccchhHHHHHHHHHHHcc---C----CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcE
Q 003540 722 VESTKIAVLLKELENLCL---S----GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~---~----~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~ 794 (812)
....|...|+++|..... . .+|++||..-.+..+.++..|...++++.-|+|.-++.+|.++|+.|....- .
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~-p 389 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA-P 389 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc-c
Confidence 357899999999987541 1 4699999999999999999999999999999999999999999999998764 4
Q ss_pred EEEEeCCCCcccc
Q 003540 795 VSDSSFLKDFFSL 807 (812)
Q Consensus 795 VlLlSlrAGG~GL 807 (812)
||+.+ ...+-||
T Consensus 390 vlVaT-~VaaRGl 401 (482)
T KOG0335|consen 390 VLVAT-NVAARGL 401 (482)
T ss_pred eEEEe-hhhhcCC
Confidence 66655 4444443
No 136
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.94 E-value=0.043 Score=56.63 Aligned_cols=46 Identities=35% Similarity=0.871 Sum_probs=33.6
Q ss_pred CCCcccc--ccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 655 ECPICLE--AFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 655 eC~iC~~--~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
-|.-|.. .-+...+|.|+|+||..|.... ....||.|++++....+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~----~~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS----SPDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC----Cccccccccceeeeeec
Confidence 4777765 4455668899999999997532 22399999999765544
No 137
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.71 E-value=0.37 Score=60.39 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=57.1
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 739 LSGSKSILFSQWTAFLDLLQIPLSRN--NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 739 ~~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
..+.+++||+......+.+...|... ++++..+||.|++++|.+++++|.+.. +.|| +||.+.+.||
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk-~~IL-VaT~iie~GI 726 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE-FQVL-VCTTIIETGI 726 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC-CCEE-EECChhhccc
Confidence 45789999999999999999999874 789999999999999999999999876 4554 4556777775
No 138
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=92.66 E-value=0.14 Score=58.37 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 741 GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 741 ~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.-+.|||+...+...-|-..|+.-+|..+-++.+|-+++|-+.+++|.++++. |||+| .+++-||
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~-VLiaT-DVAARGL 527 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG-VLIAT-DVAARGL 527 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe-EEEee-hhhhccC
Confidence 56899999999999999999999999999999999999999999999998874 66655 6666665
No 139
>PRK13767 ATP-dependent helicase; Provisional
Probab=92.63 E-value=0.41 Score=60.01 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC------CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN------NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~------gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
..+.+.|.++...+.++|||+.-.+..+.+...|... +..+..++|+++.++|..+.+.|++.. ++|++ +|.
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~-i~vLV-aTs 348 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE-LKVVV-SST 348 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC-CeEEE-ECC
Confidence 4455556665556789999999999999998888762 467888999999999999999999876 46655 556
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
+.+.||
T Consensus 349 ~Le~GI 354 (876)
T PRK13767 349 SLELGI 354 (876)
T ss_pred hHHhcC
Confidence 777776
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=92.55 E-value=0.13 Score=55.34 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=56.8
Q ss_pred ccccCCcccccCcc---chh---hHH----HhhhcceeccCCceeecccch-----hHHhhh--------hhcCCcccCC
Q 003540 448 ISDQSPNLMKKEPK---SLS---IDK----LIKQTNTLINGGTLIICPMTL-----LGQWNK--------LIQKPYEEGD 504 (812)
Q Consensus 448 ~~de~~~~~~~~~~---~~~---~~~----~~~~~~~~~~~gTlIv~P~sl-----l~qW~~--------~i~~P~e~~~ 504 (812)
++||.|+.++.... -.. ... .++..+.+..++|-.-.|.++ |.-|-. .|..-++.+.
T Consensus 177 vfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~gG 256 (303)
T PF13872_consen 177 VFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKGG 256 (303)
T ss_pred EeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceeeeeeeccccCCCCCCCCHHHHHHHHHhcC
Confidence 57888877765431 111 110 122234455556655444433 445631 1112223344
Q ss_pred HHHHHHHHHHh--hhhhhhccccccccCCCCcccCCCCcEEEEEecCCHHHHHHHHH
Q 003540 505 ERGLKLVQSIL--KPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEA 559 (812)
Q Consensus 505 ~~~~~~L~~iL--~p~~LRRtK~~v~~dG~plv~LPpk~~~vv~v~LS~~Er~~Y~~ 559 (812)
..+.+.+-.-| ...+++|..+ +-..+..++.++|++++.++||.
T Consensus 257 v~amE~vA~dlKa~G~yiaR~LS-----------f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 257 VGAMEMVAMDLKARGMYIARQLS-----------FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred chHHHHHHHHHHhcchheeeecc-----------cCCceEEEEEecCCHHHHHHhcC
Confidence 44555554433 4678888876 44457899999999999999985
No 141
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=92.49 E-value=0.39 Score=55.06 Aligned_cols=81 Identities=27% Similarity=0.291 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR--NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~--~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
..-||..|-..|+... ..|+|||-..-.-..++-..+.+ -|++.+-++|+|+++.|.++.++|..... +.|.+|
T Consensus 297 l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~--~vLF~T 372 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA--VVLFCT 372 (758)
T ss_pred hhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc--eEEEee
Confidence 3679999999988743 57899998777777777777765 39999999999999999999999998774 567777
Q ss_pred CCCcccc
Q 003540 801 LKDFFSL 807 (812)
Q Consensus 801 rAGG~GL 807 (812)
..++-||
T Consensus 373 Dv~aRGL 379 (758)
T KOG0343|consen 373 DVAARGL 379 (758)
T ss_pred hhhhccC
Confidence 8888887
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.40 E-value=0.057 Score=59.85 Aligned_cols=46 Identities=37% Similarity=0.873 Sum_probs=36.2
Q ss_pred cCCCCCCcccccccccc----ccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 651 GEQGECPICLEAFEDAV----LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~----vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
.+...||+|++-|++-+ -+.|+|.|--.|+..++. ..||+||--.+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 34578999999887644 456999999999988764 47888887655
No 143
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.026 Score=59.04 Aligned_cols=41 Identities=37% Similarity=0.857 Sum_probs=34.2
Q ss_pred CCCCccccccccccccCCcch-hchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~-~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
.-|.||++.+.|-++++|||. .|.+|-.. ..-||.||+.+-
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHHH
Confidence 459999999999999999998 59999543 348999998653
No 144
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.18 E-value=0.55 Score=57.24 Aligned_cols=81 Identities=9% Similarity=0.114 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHH--------HHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCCcE
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTA--------FLDLLQIPLSRN--NIPFLRLDGTLNQQQREKVLKQFSEDNNIM 794 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts--------~LdlIe~~L~~~--gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~ 794 (812)
.+...+++.+.+....+++++||+.... ....+...|... +++...+||+|+.++|.+++++|.++. +.
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-~~ 533 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE-ID 533 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CC
Confidence 3445566666665567999999986321 122334444443 578999999999999999999999865 45
Q ss_pred EEEEeCCCCcccc
Q 003540 795 VSDSSFLKDFFSL 807 (812)
Q Consensus 795 VlLlSlrAGG~GL 807 (812)
|| ++|.+.+.|+
T Consensus 534 IL-VaT~vie~Gi 545 (681)
T PRK10917 534 IL-VATTVIEVGV 545 (681)
T ss_pred EE-EECcceeeCc
Confidence 54 5667888887
No 145
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.07 E-value=0.11 Score=55.46 Aligned_cols=55 Identities=27% Similarity=0.532 Sum_probs=44.9
Q ss_pred CCCCCCcccccccc----ccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCC
Q 003540 652 EQGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709 (812)
Q Consensus 652 ~~~eC~iC~~~~~~----~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 709 (812)
....|||+...|.. ..+-+|||.||..|+.+.- ....||.|.++++..|++.+.+
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecC
Confidence 34689999988753 4466899999999999872 3567999999999999998754
No 146
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.40 E-value=0.1 Score=41.26 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=36.8
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
..|-.|...-...++++|+|..|..|... ....-||.|..++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~----~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG----ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eeEEEccccccccccccccceeeccccCh----hhccCCCCCCCcccCCCC
Confidence 45666777667788999999999999643 345789999999987654
No 147
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.25 E-value=0.057 Score=45.57 Aligned_cols=48 Identities=29% Similarity=0.509 Sum_probs=23.6
Q ss_pred CCCCccccccc-c---cc--c--cCCcchhchhhhhhhhcCC---------CCCCCCCCCccccc
Q 003540 654 GECPICLEAFE-D---AV--L--TPCAHRLCRECLLGSWKTP---------TSGLCPVCRKTISR 701 (812)
Q Consensus 654 ~eC~iC~~~~~-~---~~--v--t~C~H~~C~~Cl~~~~~~~---------~~~~CP~Cr~~i~~ 701 (812)
.+|+||++... + +. = ..|.+.|-..||.+|+... ..+.||.|+.+|+-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 58999998543 2 11 1 2588888899999998531 13579999998864
No 148
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.22 E-value=0.057 Score=63.25 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=38.2
Q ss_pred CCCCCCccccccccccc---cCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 652 EQGECPICLEAFEDAVL---TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~v---t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
....||+|.....+..+ .+|+|.||..|+..|.+. ...||.||..+..-.+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 34679999886555433 359999999999988764 5689999998865433
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.96 E-value=0.078 Score=57.59 Aligned_cols=50 Identities=30% Similarity=0.530 Sum_probs=42.0
Q ss_pred cCCCCCCccccc----cccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 651 GEQGECPICLEA----FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 651 ~~~~eC~iC~~~----~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
+...-|..|.+. .+...-+||.|+|...|+.+++.+.....||.||+.++
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 345679999983 45567789999999999999999889999999997655
No 150
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.88 E-value=0.83 Score=55.23 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcH--------HHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEE
Q 003540 728 AVLLKELENLCLSGSKSILFSQWT--------AFLDLLQIPLSR--NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSD 797 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQft--------s~LdlIe~~L~~--~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlL 797 (812)
..+++.+.+....+.+++||+... .....+...|.. .++....++|.|+.++|.+++++|.+.. ..| |
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-~~I-L 512 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE-VDI-L 512 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CCE-E
Confidence 556666666556789999998653 223334444443 4788999999999999999999999865 455 4
Q ss_pred EeCCCCcccc
Q 003540 798 SSFLKDFFSL 807 (812)
Q Consensus 798 lSlrAGG~GL 807 (812)
++|.+.+.|+
T Consensus 513 VaT~vie~Gv 522 (630)
T TIGR00643 513 VATTVIEVGV 522 (630)
T ss_pred EECceeecCc
Confidence 5567888887
No 151
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.095 Score=56.03 Aligned_cols=54 Identities=24% Similarity=0.546 Sum_probs=43.8
Q ss_pred cCCCCCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 651 GEQGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
.+...||+|.....++.+.. -|-.||..|+..|+. ...+||+-..+++-++++.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~~l~r 352 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVDHLIR 352 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcchHHHHHH
Confidence 45578999999776666555 599999999999998 6789999888887766554
No 152
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.36 E-value=0.85 Score=58.54 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=58.8
Q ss_pred HHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 733 ELENLCLSGSKSILFSQWTAFLDLLQIPLSRN--NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 733 ~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
++.++. .+.+++||+.-...++.+...|.+. ++++..++|.|++++|.+++.+|.+.. +.||+ +|.+.+.||
T Consensus 802 il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk-~~VLV-aTdIierGI 875 (1147)
T PRK10689 802 ILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FNVLV-CTTIIETGI 875 (1147)
T ss_pred HHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC-CCEEE-ECchhhccc
Confidence 344443 4679999999999999999999886 789999999999999999999999865 56755 556777776
No 153
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=90.35 E-value=0.19 Score=39.20 Aligned_cols=42 Identities=26% Similarity=0.680 Sum_probs=35.5
Q ss_pred CCCcccc--ccccccccCCc-----chhchhhhhhhhcCCCCCCCCCCC
Q 003540 655 ECPICLE--AFEDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVCR 696 (812)
Q Consensus 655 eC~iC~~--~~~~~~vt~C~-----H~~C~~Cl~~~~~~~~~~~CP~Cr 696 (812)
.|.||++ ..+++.+.||. |.+-..|+..++.......||.|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889986 56778899984 899999999999877777999984
No 154
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.31 E-value=0.29 Score=52.50 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=67.3
Q ss_pred cccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEe
Q 003540 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSS 799 (812)
Q Consensus 721 ~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlS 799 (812)
...+-|+.-|-.++.+++ =.+.|||+..+...+++..-+...|+..+.++..|.+..|.++...|.+.. |+.|++|
T Consensus 304 V~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~-crnLVct 379 (459)
T KOG0326|consen 304 VEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK-CRNLVCT 379 (459)
T ss_pred echhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc-cceeeeh
Confidence 356889998888888764 458999999999999999999999999999999999999999999999865 7777776
No 155
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=0.13 Score=52.82 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.5
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhh
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSW 684 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~ 684 (812)
.-|+.|+.|..+|++++-||.||++||++|+
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 5799999999999999999999999999987
No 156
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.17 Score=55.65 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=34.0
Q ss_pred CCCCCccccc-c--ccccccCCcchhchhhhhhhhcCC------CCCCCCCCC
Q 003540 653 QGECPICLEA-F--EDAVLTPCAHRLCRECLLGSWKTP------TSGLCPVCR 696 (812)
Q Consensus 653 ~~eC~iC~~~-~--~~~~vt~C~H~~C~~Cl~~~~~~~------~~~~CP~Cr 696 (812)
...|.||++. + +....+||.|.||+.|+.+|.... ...+||-|.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3689999983 2 568899999999999999998532 356787653
No 157
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=90.00 E-value=0.31 Score=35.53 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.1
Q ss_pred cchhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHH
Q 003540 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINI 43 (812)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~ 43 (812)
++++.+.++... | ++.-++.++|..++||+++||+.
T Consensus 1 i~~~~v~~L~~m-G--f~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 1 IDEEKVQQLMEM-G--FSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp SHHHHHHHHHHH-T--S-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CCHHHHHHHHHc-C--CCHHHHHHHHHHcCCCHHHHHHh
Confidence 356777777777 7 55568999999999999999985
No 158
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.82 E-value=0.12 Score=47.92 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=32.7
Q ss_pred CceeecCCCChhHHHHHHHHHhccc---CCCCcccccCCCCCCC
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDG 441 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~~~---~~~~l~v~p~s~~~~w 441 (812)
+.++...+|.|||.+++.++..... ....++++|...+.+|
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~ 45 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQ 45 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHH
Confidence 6899999999999999999987764 3467778887666555
No 159
>PRK09401 reverse gyrase; Reviewed
Probab=89.70 E-value=0.71 Score=59.38 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHH---HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEe--
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAF---LDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSS-- 799 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~---LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlS-- 799 (812)
.|...|.++++.+ +.++|||.+.... .+.|...|...|++...++|.+ .+.+++|.++. +.||+.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~-~~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE-VDVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC-CCEEEEecC
Confidence 5777888887655 5689999987655 9999999999999999999999 23469999877 6788886
Q ss_pred -CCCCcccc
Q 003540 800 -FLKDFFSL 807 (812)
Q Consensus 800 -lrAGG~GL 807 (812)
+...+-||
T Consensus 386 ~tdv~aRGI 394 (1176)
T PRK09401 386 YYGVLVRGI 394 (1176)
T ss_pred CCCceeecC
Confidence 67777776
No 160
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=0.87 Score=50.20 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
.|+..|.++.++ -..+|||..-..-++.|-..|.++|+...-++|.|.+.+|..++++|+.+.+ +||+-|...
T Consensus 251 ~k~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss-rvlIttdl~ 323 (397)
T KOG0327|consen 251 EKLDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS-RVLITTDLL 323 (397)
T ss_pred ccccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc-eEEeecccc
Confidence 399988888883 4689999999999999999999999999999999999999999999999875 677766543
No 161
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.60 E-value=1 Score=57.92 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCcH---HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEe---
Q 003540 726 KIAVLLKELENLCLSGSKSILFSQWT---AFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSS--- 799 (812)
Q Consensus 726 Kl~aLl~~L~~l~~~~~KvVVFSQft---s~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlS--- 799 (812)
|...|+++|+.+ +.++|||.+-. ...+.|...|...|++...++|.++ ++++++|.++. +.||+.+
T Consensus 314 ~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~-~~vLVata~~ 385 (1171)
T TIGR01054 314 LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGE-IDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCC-CCEEEEeccc
Confidence 355677777654 57899999988 9999999999999999999999996 37999999876 6788887
Q ss_pred CCCCcccc
Q 003540 800 FLKDFFSL 807 (812)
Q Consensus 800 lrAGG~GL 807 (812)
+...+-||
T Consensus 386 tdv~aRGI 393 (1171)
T TIGR01054 386 YGTLVRGL 393 (1171)
T ss_pred cCcccccC
Confidence 56777776
No 162
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.27 E-value=0.7 Score=52.58 Aligned_cols=76 Identities=24% Similarity=0.221 Sum_probs=62.0
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
..|..++.++. ...+|||.+-..+..-+...|--.|+..--++|++++.+|-.+|+.|++.. +.||| +|..++-||
T Consensus 415 a~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~e-idvLi-aTDvAsRGL 490 (691)
T KOG0338|consen 415 AMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEE-IDVLI-ATDVASRGL 490 (691)
T ss_pred HHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhcc-CCEEE-EechhhccC
Confidence 34445555543 578999999999999999999999999999999999999999999999865 55655 556666665
No 163
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=89.16 E-value=1.1 Score=50.31 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 740 SGSKSILFSQWTAFLDLLQIPLSRNN--IPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 740 ~~~KvVVFSQfts~LdlIe~~L~~~g--i~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.+.|+|||..-....+.+...|...| +.+..++|.+++.+|.++. .. .+|++|.+.+.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~-~iLVaTdv~~rGi 332 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QF-DILLGTSTVDVGV 332 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cC-CEEEEecHHhccc
Confidence 47899999999999999999999864 5788999999999998764 23 3567788888887
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.16 E-value=0.22 Score=53.26 Aligned_cols=53 Identities=26% Similarity=0.794 Sum_probs=39.2
Q ss_pred CCCCccccccc--cc--cccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccC
Q 003540 654 GECPICLEAFE--DA--VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 654 ~eC~iC~~~~~--~~--~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
.-||.|.++|+ |- .--+||-..|+-|.-.. +....++||.||+......+.-+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~i-rq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNI-RQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHH-HhhccCCChHhhhhccccceeEE
Confidence 45999999764 33 33468999999997543 33478999999999887765443
No 165
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=0.16 Score=55.80 Aligned_cols=54 Identities=24% Similarity=0.626 Sum_probs=43.9
Q ss_pred CCCCCcccccccc-----ccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccccccc
Q 003540 653 QGECPICLEAFED-----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 653 ~~eC~iC~~~~~~-----~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (812)
...||||++.... .+.+.|+|.|-.+||+.++.......||.|...-.+++++.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~ 62 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP 62 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHH
Confidence 3689999995433 45677999999999999997556789999999888877764
No 166
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=88.65 E-value=0.48 Score=34.56 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHhhc
Q 003540 20 EFSNMDIIRALHMANHDPAAAINIIFD 46 (812)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 46 (812)
.++.-.++++|+.++||+++|++.+|+
T Consensus 12 Gf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 12 GFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 355668999999999999999999874
No 167
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.35 E-value=0.31 Score=45.61 Aligned_cols=51 Identities=31% Similarity=0.783 Sum_probs=41.0
Q ss_pred CCCCCCccccccc-cccccC---CcchhchhhhhhhhcCC-CCCCCCCCCcccccc
Q 003540 652 EQGECPICLEAFE-DAVLTP---CAHRLCRECLLGSWKTP-TSGLCPVCRKTISRQ 702 (812)
Q Consensus 652 ~~~eC~iC~~~~~-~~~vt~---C~H~~C~~Cl~~~~~~~-~~~~CP~Cr~~i~~~ 702 (812)
...||.||.+.-. ...+-| ||-..|.-|-...|++. ..+.||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4579999999544 444555 99999999999999975 479999999987553
No 168
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.34 E-value=0.18 Score=53.99 Aligned_cols=50 Identities=26% Similarity=0.630 Sum_probs=40.6
Q ss_pred ccCCCCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
+++...|-||...+.-..++||.|..|--|-...-.--....||.||...
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 45567899999999999999999999999987654333467899998754
No 169
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=87.99 E-value=1.6 Score=54.06 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=54.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHh---CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 741 GSKSILFSQWTAFLDLLQIPLSR---NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 741 ~~KvVVFSQfts~LdlIe~~L~~---~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.++|||..-..-.+.+...|.. .++..+.++|.+++++|.++++.|.++. .+| |+||..+..||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~-rkV-lVATnIAErgI 276 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR-RKV-VLATNIAETSL 276 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC-eEE-EEecchHhhcc
Confidence 56899999999999999999986 4889999999999999999999998654 355 55777777775
No 170
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=87.68 E-value=2.2 Score=50.40 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=57.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 741 GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 741 ~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.-.|||+....-.+-|...|...|+....|+|.|+..+|+.+-++|..++. .|+ +.|.|=|.||
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~-~ii-VAT~AFGMGI 294 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEI-KVM-VATNAFGMGI 294 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCC-cEE-EEeccccCcc
Confidence 4558999999999999999999999999999999999999999999998774 454 4568888887
No 171
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=87.26 E-value=0.68 Score=33.56 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHhh
Q 003540 20 EFSNMDIIRALHMANHDPAAAINIIF 45 (812)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 45 (812)
.++.-.++++|+.++||+++|++.+|
T Consensus 12 Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 12 GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 35656899999999999999999876
No 172
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=0.31 Score=53.25 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=37.3
Q ss_pred CCCCcccc--c-ccccc-ccCCcchhchhhhhhhhcCCCC-CCCCCCCccccccccc
Q 003540 654 GECPICLE--A-FEDAV-LTPCAHRLCRECLLGSWKTPTS-GLCPVCRKTISRQDLI 705 (812)
Q Consensus 654 ~eC~iC~~--~-~~~~~-vt~C~H~~C~~Cl~~~~~~~~~-~~CP~Cr~~i~~~~l~ 705 (812)
.+|.||.+ + .++.. +-.|||.|...|+..|+..... ..||.|+-....+-++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 58999966 2 22333 4449999999999999987666 6999999444444333
No 173
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=86.57 E-value=0.86 Score=34.22 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=30.5
Q ss_pred hhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcC
Q 003540 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (812)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 47 (812)
++.+.++.++-++... -.|...|..++||+++|||.++++
T Consensus 2 ~~~v~~L~~mFP~~~~-~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDR-EVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-H-HHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4667788888887444 455666689999999999999864
No 174
>PRK09694 helicase Cas3; Provisional
Probab=85.84 E-value=3.3 Score=51.65 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred HHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHH----HHHHHHhhcCCCc--EEEEEe
Q 003540 729 VLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNN---IPFLRLDGTLNQQQR----EKVLKQFSEDNNI--MVSDSS 799 (812)
Q Consensus 729 aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~g---i~~~rlDGs~s~~~R----~~~I~~F~~~~~~--~VlLlS 799 (812)
.+++.+.+....+.+++||..-..-..-+-..|...+ +....++|+++..+| +++++.|..+... ..+|++
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 4444454444568899999999999999999998764 678999999999999 5789999443221 245788
Q ss_pred CCCCcccc
Q 003540 800 FLKDFFSL 807 (812)
Q Consensus 800 lrAGG~GL 807 (812)
|.....||
T Consensus 628 TQViE~GL 635 (878)
T PRK09694 628 TQVVEQSL 635 (878)
T ss_pred Ccchhhee
Confidence 88888887
No 175
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=85.72 E-value=2.3 Score=52.78 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHh---CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 740 SGSKSILFSQWTAFLDLLQIPLSR---NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 740 ~~~KvVVFSQfts~LdlIe~~L~~---~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.+.++|||..-..-++.+...|.. .++..+.++|.++.++|.++++.|.++. .+ +|++|..+..||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~-rk-VlvATnIAErsL 279 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR-RK-VVLATNIAETSL 279 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC-eE-EEEecchHHhcc
Confidence 367899999999999999999987 5888999999999999999999997653 34 456667777776
No 176
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.53 Score=49.78 Aligned_cols=48 Identities=25% Similarity=0.700 Sum_probs=35.2
Q ss_pred CCCcccc-----ccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccc
Q 003540 655 ECPICLE-----AFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (812)
Q Consensus 655 eC~iC~~-----~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~ 703 (812)
.||.|-. +--...+-+|+|..|.+|+...+. -....||.|...+.+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-LGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-cCCCCCCcccchhhhcc
Confidence 5999965 222344558999999999987654 34678999998876653
No 177
>KOG4284 consensus DEAD box protein [Transcription]
Probab=84.74 E-value=1.3 Score=51.92 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcc
Q 003540 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFF 805 (812)
Q Consensus 726 Kl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~ 805 (812)
|++.|-+++..+. =.+.|||+.-.+-.+-|..+|...|+...-+.|.|++++|..+++..+.-. ++||+ |+.--+-
T Consensus 259 klq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~-~rILV-sTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR-VRILV-STDLTAR 334 (980)
T ss_pred HHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce-EEEEE-ecchhhc
Confidence 5555555554442 468999999999999999999999999999999999999999999988643 66654 5454444
Q ss_pred cc
Q 003540 806 SL 807 (812)
Q Consensus 806 GL 807 (812)
||
T Consensus 335 GI 336 (980)
T KOG4284|consen 335 GI 336 (980)
T ss_pred cC
Confidence 43
No 178
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.22 E-value=0.27 Score=50.24 Aligned_cols=50 Identities=26% Similarity=0.753 Sum_probs=35.4
Q ss_pred CCCCCcccc-----ccccccccC-CcchhchhhhhhhhcCCCCCCCC--CCCccccccc
Q 003540 653 QGECPICLE-----AFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCP--VCRKTISRQD 703 (812)
Q Consensus 653 ~~eC~iC~~-----~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP--~Cr~~i~~~~ 703 (812)
+..||+|-. |-....+-| |.|..|..|+...+..+ ...|| .|.+.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G-pAqCP~~gC~kILRK~k 67 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG-PAQCPYKGCGKILRKIK 67 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC-CCCCCCccHHHHHHHhc
Confidence 457999975 223344556 99999999999877543 45687 8987766543
No 179
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.99 E-value=0.68 Score=43.80 Aligned_cols=48 Identities=17% Similarity=0.424 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHccCCCCCCcccccccc---ccccCCc------chhchhhhhhhh
Q 003540 637 SRAYVQEVVEELQKGEQGECPICLEAFED---AVLTPCA------HRLCRECLLGSW 684 (812)
Q Consensus 637 ~~~~~~~~l~~l~~~~~~eC~iC~~~~~~---~~vt~C~------H~~C~~Cl~~~~ 684 (812)
...++..++.++=..-..||.||++.+.+ .+..+|+ |.||.+|+..+-
T Consensus 10 ~k~~l~~lf~~~w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 10 KKYYLERLFNDQWPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred HHHHHHHHHHHHccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 45667777766655557899999997765 3344554 889999999873
No 180
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.94 E-value=0.4 Score=56.77 Aligned_cols=54 Identities=30% Similarity=0.675 Sum_probs=44.7
Q ss_pred CCCCCccccccccccccCCcchhchhhhhhhhcCCC-CCCCCCCCcccccccccc
Q 003540 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~-~~~CP~Cr~~i~~~~l~~ 706 (812)
..||+||.....+++.+.|.|.||.-|+-..+.... ...||+|+..+.+..+-+
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 369999999999999999999999999877665443 789999998777665544
No 181
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=83.93 E-value=0.66 Score=51.18 Aligned_cols=35 Identities=29% Similarity=0.859 Sum_probs=30.6
Q ss_pred CCCCCCccccccccccccCCcchhchhhhhhhhcC
Q 003540 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT 686 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~ 686 (812)
+...|++|..-..+|++++|+|..|+-|.....-.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 44679999999999999999999999998876543
No 182
>PRK02362 ski2-like helicase; Provisional
Probab=82.80 E-value=3.5 Score=50.91 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=48.6
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHhC------------------------------------CCCEEEEeCCCCHHHHHH
Q 003540 739 LSGSKSILFSQWTAFLDLLQIPLSRN------------------------------------NIPFLRLDGTLNQQQREK 782 (812)
Q Consensus 739 ~~~~KvVVFSQfts~LdlIe~~L~~~------------------------------------gi~~~rlDGs~s~~~R~~ 782 (812)
..+.++|||+........+...|... ......++|+++..+|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 46889999999887766655555421 124566899999999999
Q ss_pred HHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 783 VLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 783 ~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.+.|+++. ++||++| .+.+.|+
T Consensus 321 ve~~Fr~G~-i~VLvaT-~tla~Gv 343 (737)
T PRK02362 321 VEDAFRDRL-IKVISST-PTLAAGL 343 (737)
T ss_pred HHHHHHcCC-CeEEEec-hhhhhhc
Confidence 999999854 6675544 5555564
No 183
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=81.27 E-value=4.5 Score=47.06 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=68.2
Q ss_pred cchhHHHHHHHHHHHccC------CCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEE
Q 003540 723 ESTKIAVLLKELENLCLS------GSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVS 796 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~------~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~Vl 796 (812)
.+.|...+.++.+.-... .-+.|||+....--..|..+|..+|++..-||+.++..+|..+=..|....= -.
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l--~~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL--AA 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc--ce
Confidence 578888887777653222 4589999999999999999999999999999999999999999999998762 22
Q ss_pred EEeCCCCcccc
Q 003540 797 DSSFLKDFFSL 807 (812)
Q Consensus 797 LlSlrAGG~GL 807 (812)
+.+|.|-|.|.
T Consensus 494 VVTTAAL~AGV 504 (830)
T COG1202 494 VVTTAALAAGV 504 (830)
T ss_pred EeehhhhhcCC
Confidence 56777777763
No 184
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=80.82 E-value=1.2 Score=43.22 Aligned_cols=20 Identities=45% Similarity=0.921 Sum_probs=17.2
Q ss_pred CCCCCccccccccccccCCc
Q 003540 653 QGECPICLEAFEDAVLTPCA 672 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C~ 672 (812)
+..||||++.+.++|++-|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 45799999999999988873
No 185
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=80.57 E-value=2.6 Score=31.70 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=29.3
Q ss_pred hhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcC
Q 003540 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (812)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 47 (812)
++.++++...-.+... -.|.+.|..++||+++|||.++.+
T Consensus 3 ~~~v~~L~~mFP~l~~-~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDE-EVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4556677777666444 345566688999999999999876
No 186
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=80.06 E-value=2.2 Score=54.74 Aligned_cols=64 Identities=11% Similarity=0.261 Sum_probs=37.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhC------CC---CEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 741 GSKSILFSQWTAFLDLLQIPLSRN------NI---PFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 741 ~~KvVVFSQfts~LdlIe~~L~~~------gi---~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.|.|||+......+.+...|... ++ ....++|+++ +|.++|++|.++..+ .+|+|...-+.|+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~ 770 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGI 770 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCC
Confidence 357777777777766666555432 12 3345777764 456677777765433 3445556555554
No 187
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=79.42 E-value=5.4 Score=46.23 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCC-EEEEeCCCCHHHHHHHHHHhhcC-CCcEEEEEeCCCCccc
Q 003540 729 VLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIP-FLRLDGTLNQQQREKVLKQFSED-NNIMVSDSSFLKDFFS 806 (812)
Q Consensus 729 aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~-~~rlDGs~s~~~R~~~I~~F~~~-~~~~VlLlSlrAGG~G 806 (812)
.++.-|..+ +.|+=||-||.-.- --+...++++|.. ...+.|++|+..|.+--..||+. +.+.||++| .|-|.|
T Consensus 347 ~~~~sl~nl-k~GDCvV~FSkk~I--~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMG 422 (700)
T KOG0953|consen 347 TALGSLSNL-KPGDCVVAFSKKDI--FTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMG 422 (700)
T ss_pred hhhhhhccC-CCCCeEEEeehhhH--HHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccc
Confidence 344445554 45999999997432 2345566677666 99999999999999999999984 568999988 777787
Q ss_pred c
Q 003540 807 L 807 (812)
Q Consensus 807 L 807 (812)
|
T Consensus 423 L 423 (700)
T KOG0953|consen 423 L 423 (700)
T ss_pred c
Confidence 6
No 188
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=79.04 E-value=6.4 Score=50.86 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHccC-CCeEEEEcCcHHHHHHHHHHHHhCCCC---EEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 725 TKIAVLLKELENLCLS-GSKSILFSQWTAFLDLLQIPLSRNNIP---FLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~-~~KvVVFSQfts~LdlIe~~L~~~gi~---~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
.++..+++.+.++... ..++|||..-..-++.+...|...++. ++-++|++++++|.++++.+ ...+ +|+||
T Consensus 269 d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVAT 344 (1294)
T PRK11131 269 DQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLAT 344 (1294)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEec
Confidence 3556666666655433 578999999999999999999988775 56789999999999987653 3344 56777
Q ss_pred CCCcccc
Q 003540 801 LKDFFSL 807 (812)
Q Consensus 801 rAGG~GL 807 (812)
..+..||
T Consensus 345 NIAEtSI 351 (1294)
T PRK11131 345 NVAETSL 351 (1294)
T ss_pred cHHhhcc
Confidence 8888887
No 189
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.39 E-value=4.5 Score=46.26 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHH----hCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS----RNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 726 Kl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~----~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
|-.++..+|+. .+..+.|+|+...+...-+...|+ ..++++-.|.|.++.+.|.+.+++|+.+. ++||++| .
T Consensus 416 kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~-i~vLIcS-D 491 (620)
T KOG0350|consen 416 KPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGD-INVLICS-D 491 (620)
T ss_pred chHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCC-ceEEEeh-h
Confidence 44555566654 247899999999887777776666 45777778999999999999999999976 6888887 4
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
+-+-|+
T Consensus 492 ~laRGi 497 (620)
T KOG0350|consen 492 ALARGI 497 (620)
T ss_pred hhhcCC
Confidence 444443
No 190
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=78.07 E-value=3 Score=50.49 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=57.6
Q ss_pred CChHHHHHHHhcCCCCCCccCCCCcccccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecc
Q 003540 305 ISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAF 384 (812)
Q Consensus 305 l~~~~l~~~~~~~~~~~l~~~~~p~~l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~ 384 (812)
.+..+++.+....+....+.++.|..-...+|+||.+|++-...-=. +
T Consensus 136 ~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~---------------------~----------- 183 (875)
T COG4096 136 YSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFS---------------------K----------- 183 (875)
T ss_pred cCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHh---------------------c-----------
Confidence 34567777776666666777788877788999999999999875411 0
Q ss_pred cCcccccCCcccccccCceeecCCCChhHHHHHHHHHhcccC
Q 003540 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR 426 (812)
Q Consensus 385 tG~~s~~~P~~~~~~~GGILADEMGLGKTIq~iaLI~~~~~~ 426 (812)
.-+-.+|.-.-|-|||-++|++|......
T Consensus 184 -------------g~~raLlvMATGTGKTrTAiaii~rL~r~ 212 (875)
T COG4096 184 -------------GQNRALLVMATGTGKTRTAIAIIDRLIKS 212 (875)
T ss_pred -------------CCceEEEEEecCCCcceeHHHHHHHHHhc
Confidence 11228999999999999999999766543
No 191
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=77.84 E-value=6.6 Score=51.59 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=51.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCC---------------------------------CCEEEEeCCCCHHHHHHHHHH
Q 003540 740 SGSKSILFSQWTAFLDLLQIPLSRNN---------------------------------IPFLRLDGTLNQQQREKVLKQ 786 (812)
Q Consensus 740 ~~~KvVVFSQfts~LdlIe~~L~~~g---------------------------------i~~~rlDGs~s~~~R~~~I~~ 786 (812)
.+.++|||+...+..+.+...|+... +...-+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46899999999999999988887531 113467899999999999999
Q ss_pred hhcCCCcEEEEEeCCCCcccc
Q 003540 787 FSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 787 F~~~~~~~VlLlSlrAGG~GL 807 (812)
|++.. ++|+ ++|.+...||
T Consensus 323 fK~G~-LrvL-VATssLELGI 341 (1490)
T PRK09751 323 LKSGE-LRCV-VATSSLELGI 341 (1490)
T ss_pred HHhCC-ceEE-EeCcHHHccC
Confidence 99876 5665 5557777765
No 192
>PRK00254 ski2-like helicase; Provisional
Probab=77.44 E-value=6.5 Score=48.43 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=48.0
Q ss_pred HHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh---------------------------------CCCCEEEEeCCCCHH
Q 003540 732 KELENLCLSGSKSILFSQWTAFLDLLQIPLSR---------------------------------NNIPFLRLDGTLNQQ 778 (812)
Q Consensus 732 ~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~---------------------------------~gi~~~rlDGs~s~~ 778 (812)
..+.+....+.++|||+........+...|.. .......++|+|+.+
T Consensus 229 ~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 229 SLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 33444444588999999876554433322211 022456689999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 779 QREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 779 ~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+|..+.+.|+++ .++|+++ |.+.+.|+
T Consensus 309 eR~~ve~~F~~G-~i~VLva-T~tLa~Gv 335 (720)
T PRK00254 309 ERVLIEDAFREG-LIKVITA-TPTLSAGI 335 (720)
T ss_pred HHHHHHHHHHCC-CCeEEEe-CcHHhhhc
Confidence 999999999976 4677554 45555554
No 193
>PHA02653 RNA helicase NPH-II; Provisional
Probab=77.38 E-value=9.5 Score=46.39 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHHHHcc-CCCeEEEEcCcHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCccc
Q 003540 730 LLKELENLCL-SGSKSILFSQWTAFLDLLQIPLSRN--NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFS 806 (812)
Q Consensus 730 Ll~~L~~l~~-~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~G 806 (812)
++..+..... .+.++|||..-....+.+...|.+. ++..+-++|.+++. ++++++|..+...+| |+||..++.|
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kI-LVATdIAERG 459 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSI-IISTPYLESS 459 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeE-EeccChhhcc
Confidence 3444443322 3568999999999999999999887 79999999999874 578888854444455 5677888888
Q ss_pred c
Q 003540 807 L 807 (812)
Q Consensus 807 L 807 (812)
|
T Consensus 460 I 460 (675)
T PHA02653 460 V 460 (675)
T ss_pred c
Confidence 7
No 194
>PRK01172 ski2-like helicase; Provisional
Probab=77.37 E-value=8 Score=47.22 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=53.2
Q ss_pred HHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC-------------------------CCCEEEEeCCCCHHHHHHHHH
Q 003540 731 LKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN-------------------------NIPFLRLDGTLNQQQREKVLK 785 (812)
Q Consensus 731 l~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~-------------------------gi~~~rlDGs~s~~~R~~~I~ 785 (812)
...+.+....+.++|||..-......+...|... ...+..++|+++..+|..+.+
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 3445554456889999999888777666665432 013455899999999999999
Q ss_pred HhhcCCCcEEEEEeCCCCcccc
Q 003540 786 QFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 786 ~F~~~~~~~VlLlSlrAGG~GL 807 (812)
.|+++. ++|++ +|.+.+.|+
T Consensus 306 ~f~~g~-i~VLv-aT~~la~Gv 325 (674)
T PRK01172 306 MFRNRY-IKVIV-ATPTLAAGV 325 (674)
T ss_pred HHHcCC-CeEEE-ecchhhccC
Confidence 999754 56755 556666665
No 195
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=77.15 E-value=1.4 Score=47.85 Aligned_cols=43 Identities=30% Similarity=0.885 Sum_probs=35.0
Q ss_pred CCCCCCccccccccccccCC--cchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 652 EQGECPICLEAFEDAVLTPC--AHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C--~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
+..+||+|.+++..|+. .| ||..|..|-.. ...+||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLACSSCRTK-----VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEehhhhhhh-----hcccCCccccccc
Confidence 34689999999887764 56 89999999643 4579999999987
No 196
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=76.07 E-value=3.7 Score=46.23 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
--|.-.+..+|+ +.--.-|+|||-.-...---+.-.|+..||+.+.+.|.+|..-|..+|++||.+- +.++|+|-
T Consensus 252 ~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~-YdivIAtD 326 (569)
T KOG0346|consen 252 EDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL-YDIVIATD 326 (569)
T ss_pred chhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc-eeEEEEcc
Confidence 346655555543 3333579999999888888888899999999999999999999999999999865 56777765
No 197
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=75.91 E-value=10 Score=46.69 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNN-IPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~g-i~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
..+++.|.++.++...++||..-.++-..+...|.+.+ .....-|||+|..+|..+-++|+++. .+++++|+
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lravV~TS 312 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LKAVVATS 312 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ceEEEEcc
Confidence 45666666666666689999999999999999999876 88888999999999999999999988 78877664
No 198
>PHA03096 p28-like protein; Provisional
Probab=75.10 E-value=1.4 Score=47.49 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCCccccccc--------cccccCCcchhchhhhhhhhcCC-CCCCCCCCCccc
Q 003540 654 GECPICLEAFE--------DAVLTPCAHRLCRECLLGSWKTP-TSGLCPVCRKTI 699 (812)
Q Consensus 654 ~eC~iC~~~~~--------~~~vt~C~H~~C~~Cl~~~~~~~-~~~~CP~Cr~~i 699 (812)
.+|.||++... ...+..|-|.||..|+..+.... ....||.||...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchh
Confidence 78999998432 24567799999999998776432 234555555543
No 199
>PRK14701 reverse gyrase; Provisional
Probab=74.91 E-value=5.6 Score=52.98 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHH---HHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC---C
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTA---FLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF---L 801 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts---~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl---r 801 (812)
..|+++|+.+ +..+|||++-.. ..+.|...|...|++...++|. |.+++++|.++. +.||+.|- .
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~-~~VLVaT~s~~g 390 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE-IDYLIGVATYYG 390 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC-CCEEEEecCCCC
Confidence 4677776654 678999998654 4689999999999999999994 999999999977 57888874 3
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
..+-||
T Consensus 391 vaaRGI 396 (1638)
T PRK14701 391 TLVRGL 396 (1638)
T ss_pred eeEecC
Confidence 445554
No 200
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=74.20 E-value=1.5 Score=46.68 Aligned_cols=42 Identities=26% Similarity=0.710 Sum_probs=30.8
Q ss_pred CCCcccccc-ccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 655 ECPICLEAF-EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 655 eC~iC~~~~-~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
-|--|.-++ ...-+.+|.|.||.+|... .....||.|..++.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~----~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS----DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc----CccccCcCcccHHH
Confidence 577887754 4466789999999999643 23568999977654
No 201
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=74.15 E-value=1.9 Score=36.77 Aligned_cols=30 Identities=30% Similarity=0.642 Sum_probs=26.2
Q ss_pred CCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 670 PCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 670 ~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
-|-|.|-..||..++.. ...||.||++...
T Consensus 53 ~CnHaFH~HCI~rWL~T--k~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT--KGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhh--CCCCCCCCceeEE
Confidence 49999999999999976 7899999998644
No 202
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.68 E-value=1.7 Score=49.21 Aligned_cols=52 Identities=27% Similarity=0.663 Sum_probs=36.0
Q ss_pred CCCCCccc-ccc---ccccccCCcchhchhhhhhhhcC----CCCCCCCC--CCcccccccc
Q 003540 653 QGECPICL-EAF---EDAVLTPCAHRLCRECLLGSWKT----PTSGLCPV--CRKTISRQDL 704 (812)
Q Consensus 653 ~~eC~iC~-~~~---~~~~vt~C~H~~C~~Cl~~~~~~----~~~~~CP~--Cr~~i~~~~l 704 (812)
..+|.||. +.+ ....+..|+|.||.+|+..|++. ...++||. |...++....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 46899999 322 23346779999999999999863 35677754 5555555443
No 203
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=73.20 E-value=6.6 Score=44.03 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 741 GSKSILFSQWTAFLDLLQIPLSRN---NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 741 ~~KvVVFSQfts~LdlIe~~L~~~---gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
-+|.|||+.-..--|-|+.++.+. .+..+-++|...+.+|.+-|+.|+.-. ++ |||.+..++-||
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d-vk-flictdvaargl 572 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD-VK-FLICTDVAARGL 572 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC-eE-EEEEehhhhccc
Confidence 689999999998899999999886 467888999999999999999999865 33 566667777776
No 204
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=73.15 E-value=3.7 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=14.6
Q ss_pred CceeecCCCChhHHHHHH
Q 003540 401 GGILADAMGLGKTVMTIA 418 (812)
Q Consensus 401 GGILADEMGLGKTIq~ia 418 (812)
+.+++-.-|.|||+..+.
T Consensus 38 ~~li~~~TG~GKT~~~~~ 55 (203)
T cd00268 38 DVIGQAQTGSGKTAAFLI 55 (203)
T ss_pred cEEEECCCCCcHHHHHHH
Confidence 478888999999988433
No 205
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=73.07 E-value=8.8 Score=49.73 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHccC-CCeEEEEcCcHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 725 TKIAVLLKELENLCLS-GSKSILFSQWTAFLDLLQIPLSRNN---IPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~-~~KvVVFSQfts~LdlIe~~L~~~g---i~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
.++.++++.+.++..+ ..++|||..-..-++.+...|.+.+ +.++-++|+++.++|+++++.| +..+| |+||
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkI-VLAT 337 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRI-VLAT 337 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceE-EEec
Confidence 4566777777665443 5689999999999999999998765 4578899999999999985544 33344 6678
Q ss_pred CCCcccc
Q 003540 801 LKDFFSL 807 (812)
Q Consensus 801 rAGG~GL 807 (812)
..+..||
T Consensus 338 NIAEtSL 344 (1283)
T TIGR01967 338 NVAETSL 344 (1283)
T ss_pred cHHHhcc
Confidence 8888887
No 206
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.30 E-value=1.9 Score=44.47 Aligned_cols=40 Identities=35% Similarity=0.800 Sum_probs=32.5
Q ss_pred CCccccccccccccCCcch-hchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 656 CPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 656 C~iC~~~~~~~~vt~C~H~-~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
|-.|.+.-...++.||-|. +|..|-.. ...||+|+.+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES------LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc------CccCCCCcChhhc
Confidence 9999997777999999886 79999532 4569999987654
No 207
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=71.89 E-value=6.7 Score=49.18 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHHHHHc--cCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCcc
Q 003540 728 AVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFF 805 (812)
Q Consensus 728 ~aLl~~L~~l~--~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG~ 805 (812)
..+..++..+. ..+.-.||++......+.+...|...|+...-|+.+|+.++|+.+-..|..+. ++|..++ -|=|.
T Consensus 470 ~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~VivAT-VAFGM 547 (941)
T KOG0351|consen 470 DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK-IRVIVAT-VAFGM 547 (941)
T ss_pred cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC-CeEEEEE-eeccC
Confidence 34444444433 33889999999999999999999999999999999999999999999999988 6676655 56777
Q ss_pred cc
Q 003540 806 SL 807 (812)
Q Consensus 806 GL 807 (812)
||
T Consensus 548 GI 549 (941)
T KOG0351|consen 548 GI 549 (941)
T ss_pred CC
Confidence 76
No 208
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.01 E-value=3.4 Score=49.82 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=33.9
Q ss_pred CCCCcccccccccccc-CCcchhchhhhhhhhcCCCCCCCCCCCc
Q 003540 654 GECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt-~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~ 697 (812)
..|..|.-+++-|+|- .|+|.+...|+. .....||.|+-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 4799999999988765 699999999997 35689999987
No 209
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.10 E-value=8.6 Score=43.22 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=70.0
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
....|..+|+.++..... ..+.|||.--.--..++...|...|+....|.|++.+..|..-+.+|+.... -+|+++.
T Consensus 243 ~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~--~~lvvTd 319 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKT--SILVVTD 319 (529)
T ss_pred ccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCcc--ceEEEeh
Confidence 357899999999988644 5689999999999999999999999999999999999999999999998764 3455666
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
.|+-|+
T Consensus 320 vaaRG~ 325 (529)
T KOG0337|consen 320 VAARGL 325 (529)
T ss_pred hhhccC
Confidence 665554
No 210
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=69.16 E-value=7.1 Score=29.98 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=34.8
Q ss_pred cccchhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhc
Q 003540 3 TKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (812)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 46 (812)
..|+|++++..+.++-.++-+ -|||.|.+.+=|+-.|||-.+.
T Consensus 6 ~~vPedlI~q~q~VLqgksR~-vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRN-VIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HH-HHHHHHHHTTT-HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcHH-HHHHHHHHhcccHHHHHHHHhc
Confidence 468999999999999887664 5999999999999999997764
No 211
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=2.9 Score=45.46 Aligned_cols=45 Identities=33% Similarity=0.778 Sum_probs=35.9
Q ss_pred CCCCcccccc------ccccccCCcchhchhhhhhhhcCCCCCCCCCCCccc
Q 003540 654 GECPICLEAF------EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (812)
Q Consensus 654 ~eC~iC~~~~------~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i 699 (812)
.+|.||.++. ..|.++.|+|.+|..|+.....+. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-eeeccCCCCcc
Confidence 5799998754 346778899999999998877654 45669999995
No 212
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=68.22 E-value=3.8 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.794 Sum_probs=16.8
Q ss_pred CcchhchhhhhhhhcCCCCCCCCCC
Q 003540 671 CAHRLCRECLLGSWKTPTSGLCPVC 695 (812)
Q Consensus 671 C~H~~C~~Cl~~~~~~~~~~~CP~C 695 (812)
|.-.+-..|+..|+++....+||.|
T Consensus 19 C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 19 CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6666778899999999888899998
No 213
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=67.34 E-value=7.8 Score=27.01 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=21.9
Q ss_pred ccceeeeecCCCceeEEeecccCcccccCC
Q 003540 364 PCWEAYRLLDERELVVYLNAFSGEATIEFP 393 (812)
Q Consensus 364 plW~~~~~~d~~~~~fY~N~~tG~~s~~~P 393 (812)
+-|+++.-++ .+..||+|..||+.+-+.|
T Consensus 3 ~gW~~~~~~~-~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPD-SGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETT-TSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCC-CCCEEEEeCCCCCEEeCCC
Confidence 3487665455 5779999999999887765
No 214
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=65.01 E-value=16 Score=40.21 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCCCccc-cccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCC-Cccc--------------c-c
Q 003540 654 GECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG-SRFQ--------------V-D 716 (812)
Q Consensus 654 ~eC~iC~-~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~-~~~~--------------~-~ 716 (812)
.-|.-|. ..+......||+-.+|+.|+.----+......-.--..+...+.+..... +..+ . .
T Consensus 40 ~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~mgRv~sd~~Ly~~~~~~fp~~s~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~ 119 (441)
T COG4098 40 YRCNRCGNTHIELFAKLPCGCLYCRNCLMMGRVRSDQKLYYWKPYAFPKKSVLQWKGTLSPGQKKASNQLVQYIKQKEDT 119 (441)
T ss_pred EEehhcCCcchhhhcccccceEeehhhhhcccccccceeeecCCcCCCccceeeeccccChhHHHHHHHHHHHHHhcCcE
Confidence 4799998 47888899999999999999642111100000000011111111111000 0000 0 0
Q ss_pred cccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHH
Q 003540 717 IEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN--NIPFLRLDGTLNQQQRE 781 (812)
Q Consensus 717 ~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~rlDGs~s~~~R~ 781 (812)
+.-....++|.+.+-+-+......|..|.|-|.-+++---|...|++. ++...-++|.-++.-|.
T Consensus 120 lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~ 186 (441)
T COG4098 120 LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFRA 186 (441)
T ss_pred EEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhccc
Confidence 011224689999999999999899999999999999888888888874 67777888887666553
No 215
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.79 E-value=3.7 Score=45.55 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=38.5
Q ss_pred CCCCCcccc---ccccccccCCcchhchhhhhhhhcCCC-CCCCCCCCccccc
Q 003540 653 QGECPICLE---AFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISR 701 (812)
Q Consensus 653 ~~eC~iC~~---~~~~~~vt~C~H~~C~~Cl~~~~~~~~-~~~CP~Cr~~i~~ 701 (812)
...|||--+ .-+-|+.+.|||..|++-+....++.. .-+||.|-...+.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 367998876 345588999999999999998887765 5799999765544
No 216
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.65 E-value=2.7 Score=44.30 Aligned_cols=35 Identities=31% Similarity=0.676 Sum_probs=31.2
Q ss_pred CCCCCccccccccccccCC----cchhchhhhhhhhcCC
Q 003540 653 QGECPICLEAFEDAVLTPC----AHRLCRECLLGSWKTP 687 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~C----~H~~C~~Cl~~~~~~~ 687 (812)
-..|-+|.+-++|.-+..| .|.||.-|-.+.|+.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 3579999999999988888 7999999999999865
No 217
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.88 E-value=37 Score=30.37 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=46.0
Q ss_pred CCeEEEEcC------cHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 741 GSKSILFSQ------WTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 741 ~~KvVVFSQ------fts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
.+|||||+. +=.+=..+...|+..|+.|..+|=......|+.+.+......=+.||+=.--.||
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG 80 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGG 80 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 589999975 4566677888899999999999876667777777766555444567764433344
No 218
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.64 E-value=29 Score=40.75 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=63.6
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHH-HhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPL-SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L-~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
.-+|+-++.+++.... .--++||-|...--.-|-..| .-.+|..-.++|..++.+|.+.+++|.... +.||+++ .
T Consensus 371 e~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~-IwvLicT-d 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK-IWVLICT-D 446 (593)
T ss_pred chhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC-eeEEEeh-h
Confidence 4688888888887753 457999999987777777777 667899999999999999999999999876 6676654 4
Q ss_pred CCccc
Q 003540 802 KDFFS 806 (812)
Q Consensus 802 AGG~G 806 (812)
.-+-|
T Consensus 447 ll~RG 451 (593)
T KOG0344|consen 447 LLARG 451 (593)
T ss_pred hhhcc
Confidence 43333
No 219
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=62.80 E-value=29 Score=30.47 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=42.5
Q ss_pred CCeEEEEcC------cHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 003540 741 GSKSILFSQ------WTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDF 804 (812)
Q Consensus 741 ~~KvVVFSQ------fts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAGG 804 (812)
+++|||||. |=.+=..+...|+..|+.|..+|=......|+.+.+.-....=+.||+=.--.||
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGG 76 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 579999987 5667778888999999999999865555555555443222223456553333344
No 220
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=62.41 E-value=29 Score=44.85 Aligned_cols=25 Identities=44% Similarity=0.428 Sum_probs=21.4
Q ss_pred cCceeecCCCChhHHHHHHHHHhcc
Q 003540 400 RGGILADAMGLGKTVMTIALLLTHS 424 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI~~~~ 424 (812)
++++|...-|.|||+++++++....
T Consensus 434 r~~Ll~maTGSGKT~tai~li~~L~ 458 (1123)
T PRK11448 434 REILLAMATGTGKTRTAIALMYRLL 458 (1123)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999886543
No 221
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=61.94 E-value=5 Score=34.65 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=32.6
Q ss_pred HhhhhcccCCCC-ChHHHHHHHHhcCCCHHHHHHHhhcC
Q 003540 10 LSTVRSVVGPEF-SNMDIIRALHMANHDPAAAINIIFDT 47 (812)
Q Consensus 10 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 47 (812)
...++++||+.+ +...|..+|-.+..|+++||+..+..
T Consensus 32 l~~vr~~Lg~~~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 32 LPQVREVLGDYVPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp CCCHHHHCCCCC--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 457899999988 77899999999999999999999987
No 222
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.59 E-value=18 Score=42.61 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHHHHhC--CCCEEEEeCCCCHHHH--HHHHHHhhcCCCcEEEEEeCCCCccc
Q 003540 754 LDLLQIPLSRN--NIPFLRLDGTLNQQQR--EKVLKQFSEDNNIMVSDSSFLKDFFS 806 (812)
Q Consensus 754 LdlIe~~L~~~--gi~~~rlDGs~s~~~R--~~~I~~F~~~~~~~VlLlSlrAGG~G 806 (812)
.+.+++.|.+. +.++.++|+.++..++ ++++++|.+.+ +.||+.| ..-+-|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~-~~ILVgT-~~i~kG 325 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGK-ADILIGT-QMIAKG 325 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCC-CCEEEeC-cccccC
Confidence 57788888876 8899999999987666 99999999854 4566544 444444
No 223
>PRK05580 primosome assembly protein PriA; Validated
Probab=61.06 E-value=14 Score=45.31 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHhC--CCCEEEEeCCCC--HHHHHHHHHHhhcCCCcEEEEEeCCCCcccc
Q 003540 755 DLLQIPLSRN--NIPFLRLDGTLN--QQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 755 dlIe~~L~~~--gi~~~rlDGs~s--~~~R~~~I~~F~~~~~~~VlLlSlrAGG~GL 807 (812)
+.+++.|.+. +++..++||.+. .++|++++++|.+.. +.||+.| ...+-|+
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-~~ILVgT-~~iakG~ 494 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE-ADILIGT-QMLAKGH 494 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC-CCEEEEC-hhhccCC
Confidence 3444444443 678899999986 467999999999854 4576554 4445554
No 224
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.71 E-value=4.3 Score=49.36 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=28.4
Q ss_pred cCCCCCCcccccc--ccccccCCcchhchhhhhhhhc
Q 003540 651 GEQGECPICLEAF--EDAVLTPCAHRLCRECLLGSWK 685 (812)
Q Consensus 651 ~~~~eC~iC~~~~--~~~~vt~C~H~~C~~Cl~~~~~ 685 (812)
+.+..|.+|..++ ....+.+|+|.|.++|+.....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3467899999854 5677889999999999987653
No 225
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=14 Score=37.89 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=37.7
Q ss_pred CCCCCCccccccc--cccccCCcchhchhhhhhhhcC------CCCCCCCCCCcccc
Q 003540 652 EQGECPICLEAFE--DAVLTPCAHRLCRECLLGSWKT------PTSGLCPVCRKTIS 700 (812)
Q Consensus 652 ~~~eC~iC~~~~~--~~~vt~C~H~~C~~Cl~~~~~~------~~~~~CP~Cr~~i~ 700 (812)
-...|..|..++. +.+-+-|.|.|.-+|+.+.-.+ ...-.||.|..+|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3568999998765 4566679999999999876532 24679999998764
No 226
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=56.84 E-value=8.6 Score=37.51 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=40.4
Q ss_pred CCCCCCccccccccccccCCcc-----hhchhhhhhhhcCCCCCCCCCCCccccccccc
Q 003540 652 EQGECPICLEAFEDAVLTPCAH-----RLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (812)
Q Consensus 652 ~~~eC~iC~~~~~~~~vt~C~H-----~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (812)
...+|-||.+... ....||.= ...++|+..++.......|+.|..+.......
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~ 64 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNY 64 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEec
Confidence 4578999998654 34567643 34789999999988899999999988765433
No 227
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=55.54 E-value=1.1e+02 Score=38.39 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhhhccc------cccccCCCCcccCCC--CcEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003540 507 GLKLVQSILKPIMLRRTK------SSTDREGRPILVLPP--ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQG 575 (812)
Q Consensus 507 ~~~~L~~iL~p~~LRRtK------~~v~~dG~plv~LPp--k~~~vv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g 575 (812)
++..+..+++-+.+|+.- .+|... |-+ ..+..+.|+|++.-+.+.+.+..-....+.+....+
T Consensus 78 g~~~l~~vmk~L~i~~v~l~prf~~~V~~~------l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n 148 (814)
T TIGR00596 78 GFSPLETKMRNLFLRHVYLWPRFHVEVASS------LEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKN 148 (814)
T ss_pred chHHHHHHHHHhCcCeEEEeCCCchHHHHH------hccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 557788888888777652 222222 333 467778999999999999999888877777665554
No 228
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=55.45 E-value=2.5e+02 Score=34.78 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=53.4
Q ss_pred HHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc---CCCcEEEEEeCCCC
Q 003540 732 KELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE---DNNIMVSDSSFLKD 803 (812)
Q Consensus 732 ~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~---~~~~~VlLlSlrAG 803 (812)
..+..-..++.||+|-..-..-.--+-..|+..+-+.+.||+++..++|.+.+++..+ .... .++++|.+-
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVI 504 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVI 504 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEE
Confidence 3333334558899999988888888888888887789999999999999999997764 3333 445566653
No 229
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=54.24 E-value=96 Score=31.80 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHccCCCCCCcccc-ccccccccCCcchhchhhhhhhhcCCCCCCCCCCCc
Q 003540 639 AYVQEVVEELQKGEQGECPICLE-AFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (812)
Q Consensus 639 ~~~~~~l~~l~~~~~~eC~iC~~-~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~ 697 (812)
+.++..+.........+|.+|.. .+...---.|+-.+-..|+..|++. .+.||.|..
T Consensus 167 aELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d 224 (235)
T KOG4718|consen 167 AELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGD 224 (235)
T ss_pred HHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhc
Confidence 34444455444455678999988 4444444456666777889999876 889999964
No 230
>PRK05580 primosome assembly protein PriA; Validated
Probab=53.81 E-value=56 Score=40.03 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEe
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR-NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSS 799 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~-~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlS 799 (812)
.|+|....+..+.+....|.++||...-.....-+...|.. .|.....++|.++.++|.+...+..++. +.|++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~-~~IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE-AKVVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC-CCEEEec
Confidence 58999999888877767788999999999888888777765 4889999999999999998888877654 4555544
No 231
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=53.59 E-value=55 Score=40.70 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.++.+.|.-|||.+.....-+.|...|.+.||++-.++.. ..+|++.|=. +....-.|-+.+ .-
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIAT-NM 483 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIAT-NM 483 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEec-cc
Confidence 4689999999999988889999999999999999999999999999999986 3455554443 343333465555 54
Q ss_pred Cccc
Q 003540 803 DFFS 806 (812)
Q Consensus 803 GG~G 806 (812)
+|-|
T Consensus 484 AGRG 487 (925)
T PRK12903 484 AGRG 487 (925)
T ss_pred ccCC
Confidence 5544
No 232
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=6.2 Score=46.10 Aligned_cols=36 Identities=33% Similarity=0.823 Sum_probs=27.1
Q ss_pred CCCCcccccc----ccccccCCcchhchhhhhhhhcCCCCCCCC
Q 003540 654 GECPICLEAF----EDAVLTPCAHRLCRECLLGSWKTPTSGLCP 693 (812)
Q Consensus 654 ~eC~iC~~~~----~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP 693 (812)
.-|+||...+ -.|+.+.|+|..|+.|+..... ..||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC
Confidence 3699996633 4588889999999999976543 3566
No 233
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.54 E-value=72 Score=37.59 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=61.4
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEE
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR-NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDS 798 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~-~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLl 798 (812)
..|+|....+..+.+....|.++||.+...+...-+...|.+ .|.....++|.++.++|.+...+-.+.+ ..|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~-~~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE-ILVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC-CCEEEC
Confidence 369999999998888777789999999999888877777765 4788999999999999988887766544 345443
No 234
>PHA02862 5L protein; Provisional
Probab=52.32 E-value=9 Score=36.66 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCCCccccccccccccCCc-----chhchhhhhhhhcCCCCCCCCCCCccccccccc
Q 003540 654 GECPICLEAFEDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~-----H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (812)
..|-||.+.-++. +.||. ....++|+..++.......|+.|+.+......+
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~y 58 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTY 58 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEcc
Confidence 5799999875444 57763 446789999999988899999999987655444
No 235
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.05 E-value=3.2 Score=34.80 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=25.0
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
..||.|..+|+-.. +|..|..|-..|.. .+.||.|.+++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~---~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK---EAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE---EEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee---cccCCCcccHHHH
Confidence 46999998866544 78899999877643 5789999988754
No 236
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=51.60 E-value=64 Score=38.84 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHH--------HHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhcCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAF--------LDLLQIPLSR--NNIPFLRLDGTLNQQQREKVLKQFSEDNN 792 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~--------LdlIe~~L~~--~gi~~~rlDGs~s~~~R~~~I~~F~~~~~ 792 (812)
.-.+...+++.+++-..+|+++-|.+.-..- ..-+-..|+. -++..-.+||+|+.+++++++.+|++..
T Consensus 455 ~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e- 533 (677)
T COG1200 455 PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE- 533 (677)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC-
Confidence 3456677777776655689999988764321 1122223332 2566788999999999999999999876
Q ss_pred cEEEEEeC
Q 003540 793 IMVSDSSF 800 (812)
Q Consensus 793 ~~VlLlSl 800 (812)
+.||+.+|
T Consensus 534 ~~ILVaTT 541 (677)
T COG1200 534 IDILVATT 541 (677)
T ss_pred CcEEEEee
Confidence 45655443
No 237
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=51.15 E-value=64 Score=39.42 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.++.+.|.-|||.++...--+.|...|.+.||++..|...- ..+-+++|.+=-... .|-+. |.-
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~-~~~EA~IIa~AG~~g--aVTIA-TNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN-DAEEARIIAEAGKYG--AVTVS-TQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc-hHhHHHHHHhcCCCC--cEEEE-ecC
Confidence 46799999999999988999999999999999999999999999999998873 333355555433333 35444 455
Q ss_pred Cccc
Q 003540 803 DFFS 806 (812)
Q Consensus 803 GG~G 806 (812)
+|-|
T Consensus 485 AGRG 488 (764)
T PRK12326 485 AGRG 488 (764)
T ss_pred CCCc
Confidence 5544
No 238
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.38 E-value=9.1 Score=37.66 Aligned_cols=50 Identities=28% Similarity=0.579 Sum_probs=36.0
Q ss_pred CCCCCCccccc-----ccccc--ccCCcchhchhhhhhhhcCC---------CCCCCCCCCccccc
Q 003540 652 EQGECPICLEA-----FEDAV--LTPCAHRLCRECLLGSWKTP---------TSGLCPVCRKTISR 701 (812)
Q Consensus 652 ~~~eC~iC~~~-----~~~~~--vt~C~H~~C~~Cl~~~~~~~---------~~~~CP~Cr~~i~~ 701 (812)
+...|.||..- +.|.+ -..|+..|..-|+.+|++.- --+.||.|..|+..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 34679999862 22322 34699999999999998732 14799999999754
No 239
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=47.38 E-value=85 Score=36.78 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN 791 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~ 791 (812)
.+-+.-|+..++...+.+++++|-+--..|..-|-.+|...||+...+|..+..-+|.++|+..+...
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~ 496 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE 496 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC
Confidence 45667777777776677999999999999999999999999999999999999999999999999765
No 240
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.19 E-value=16 Score=42.26 Aligned_cols=57 Identities=25% Similarity=0.607 Sum_probs=40.1
Q ss_pred ccCCCCCCccccccc-cccccCCcchhchhhhhhhhcCC----CC--CCCC--CCCcccccccccc
Q 003540 650 KGEQGECPICLEAFE-DAVLTPCAHRLCRECLLGSWKTP----TS--GLCP--VCRKTISRQDLIT 706 (812)
Q Consensus 650 ~~~~~eC~iC~~~~~-~~~vt~C~H~~C~~Cl~~~~~~~----~~--~~CP--~Cr~~i~~~~l~~ 706 (812)
.....+|.||.+... ..+...|+|.||..|...|+... .. .+|| .|...+....+..
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~ 132 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEK 132 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeee
Confidence 344579999999776 47778899999999999999642 12 3454 4666665554443
No 241
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=46.46 E-value=81 Score=25.95 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=39.9
Q ss_pred eEEEEc-CcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CCcEEEEE
Q 003540 743 KSILFS-QWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSED-NNIMVSDS 798 (812)
Q Consensus 743 KvVVFS-Qfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~-~~~~VlLl 798 (812)
||+||+ .+=.+=..+...|+..|+.|.-+|-......++++.+..... .=+.|++=
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466676 444566677788888999999999988877888877777654 33445543
No 242
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=45.33 E-value=9.7 Score=34.31 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.4
Q ss_pred cCCCCCCcccccccc--ccccCCcchhchhhhh
Q 003540 651 GEQGECPICLEAFED--AVLTPCAHRLCRECLL 681 (812)
Q Consensus 651 ~~~~eC~iC~~~~~~--~~vt~C~H~~C~~Cl~ 681 (812)
.+...|++|..++.. .++.||+|.+...|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345679999997654 5677999999999963
No 243
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=45.05 E-value=17 Score=40.21 Aligned_cols=55 Identities=27% Similarity=0.603 Sum_probs=37.3
Q ss_pred CCCCcccc--ccccccccCCcchhchhhhhhhhcC----------------------CCCCCCCCCCccccccccccCC
Q 003540 654 GECPICLE--AFEDAVLTPCAHRLCRECLLGSWKT----------------------PTSGLCPVCRKTISRQDLITAP 708 (812)
Q Consensus 654 ~eC~iC~~--~~~~~~vt~C~H~~C~~Cl~~~~~~----------------------~~~~~CP~Cr~~i~~~~l~~~~ 708 (812)
.|||||+- +-..-.+--|....|.+|+...-.. ....+||.|..+-..-..+.++
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i~ 153 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKIV 153 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeeccc
Confidence 69999986 3333444459999999998865421 1136999998876655555444
No 244
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=44.73 E-value=16 Score=40.76 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=26.4
Q ss_pred CCcchhchhhhhhhhcC---C--------CCCCCCCCCcccccccc
Q 003540 670 PCAHRLCRECLLGSWKT---P--------TSGLCPVCRKTISRQDL 704 (812)
Q Consensus 670 ~C~H~~C~~Cl~~~~~~---~--------~~~~CP~Cr~~i~~~~l 704 (812)
-|.-..|.+|+..++.. + ....||.||..+-..|+
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 37778899999988742 1 25689999998766654
No 245
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.63 E-value=26 Score=39.46 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=56.4
Q ss_pred CCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHH
Q 003540 655 ECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKE 733 (812)
Q Consensus 655 eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKl~aLl~~ 733 (812)
-|.|-.+...+|++.+ -+|.|-+.-|+.|+.. .++||.-.++++.++|+++....... ... ...+-|-+|+..
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs~eelV~Ik~~~~v~--pk~--~satSIPalL~~ 75 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLSIEELVEIKVPAQVR--PKP--PSATSIPALLKT 75 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH--cCCCCCCCCcCCHHHeeecccccccc--CCC--CCccchHHHHHH
Confidence 5999999999999998 8999999999999873 57999999999999999875433211 111 112226666666
Q ss_pred HHH
Q 003540 734 LEN 736 (812)
Q Consensus 734 L~~ 736 (812)
|++
T Consensus 76 lQd 78 (506)
T KOG0289|consen 76 LQD 78 (506)
T ss_pred HHH
Confidence 654
No 246
>PRK10689 transcription-repair coupling factor; Provisional
Probab=44.36 E-value=42 Score=43.60 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=24.6
Q ss_pred cCceeecCCCChhHHHHHHHH-HhcccCCCCcccccCCCC
Q 003540 400 RGGILADAMGLGKTVMTIALL-LTHSQRGGLSGIQSASQP 438 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI-~~~~~~~~~l~v~p~s~~ 438 (812)
..-+++-++|.|||..++-.+ ........+++++|...+
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 347999999999998765222 222222346777776543
No 247
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=44.32 E-value=14 Score=47.05 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=36.7
Q ss_pred cCCCCCCccccc---cccccccCCcchhchhhhhhhhcCC--------CCCCCCCCCcccccc
Q 003540 651 GEQGECPICLEA---FEDAVLTPCAHRLCRECLLGSWKTP--------TSGLCPVCRKTISRQ 702 (812)
Q Consensus 651 ~~~~eC~iC~~~---~~~~~vt~C~H~~C~~Cl~~~~~~~--------~~~~CP~Cr~~i~~~ 702 (812)
+.+..|-||+.. ..-.+-+.|+|.|...|....+++. .-..||.|..+|+.-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 445678888762 2334567899999999977666542 246899999998753
No 248
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.84 E-value=20 Score=43.70 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=39.0
Q ss_pred cccCChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccCceeecCCCC
Q 003540 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGL 410 (812)
Q Consensus 331 l~~~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~GGILADEMGL 410 (812)
.+.-.|+||..|+.=+..+-.... | + ...++|++...-|-
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~-----------~-----~------------------------~~~~~gli~~~TGs 274 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKT-----------W-----G------------------------KDERGGLIWHTQGS 274 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcc-----------c-----C------------------------CCCceeEEEEecCC
Confidence 566689999999999887632100 0 0 01358999999999
Q ss_pred hhHHHHHHHHHhc
Q 003540 411 GKTVMTIALLLTH 423 (812)
Q Consensus 411 GKTIq~iaLI~~~ 423 (812)
|||++|+.++...
T Consensus 275 GKT~t~~~la~~l 287 (667)
T TIGR00348 275 GKTLTMLFAARKA 287 (667)
T ss_pred CccHHHHHHHHHH
Confidence 9999998887654
No 249
>PTZ00424 helicase 45; Provisional
Probab=43.55 E-value=28 Score=39.25 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=13.6
Q ss_pred CChHHHHHHHHHHHhc
Q 003540 334 ELRPYQKQALHWMVQL 349 (812)
Q Consensus 334 ~LrpyQkqgl~WMl~r 349 (812)
.+.|+|.+++..++..
T Consensus 50 ~~~~~Q~~ai~~i~~~ 65 (401)
T PTZ00424 50 KPSAIQQRGIKPILDG 65 (401)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5899999999998753
No 250
>PRK01172 ski2-like helicase; Provisional
Probab=43.05 E-value=23 Score=43.33 Aligned_cols=35 Identities=14% Similarity=0.020 Sum_probs=23.0
Q ss_pred CceeecCCCChhHHHHHHHHHhccc-CCCCcccccC
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQ-RGGLSGIQSA 435 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~~~-~~~~l~v~p~ 435 (812)
..|++-.-|-|||+.+.-.|..... ....+.++|.
T Consensus 39 nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~ 74 (674)
T PRK01172 39 NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPL 74 (674)
T ss_pred cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEech
Confidence 3688899999999987655544332 2334555564
No 251
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=42.59 E-value=1.9e+02 Score=30.31 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=18.8
Q ss_pred CceeecCCCChhHHHHHHHHHhcccCC
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQRG 427 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~~~~~ 427 (812)
+.++==-||-|||-.++=+++....++
T Consensus 43 n~v~QlnMGeGKTsVI~Pmla~~LAdg 69 (229)
T PF12340_consen 43 NSVMQLNMGEGKTSVIVPMLALALADG 69 (229)
T ss_pred CeEeeecccCCccchHHHHHHHHHcCC
Confidence 456666799999987766666555444
No 252
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=42.57 E-value=26 Score=33.78 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=22.3
Q ss_pred ceeecCCCChhHHHHHHHHHhcccC---CCCcccccC
Q 003540 402 GILADAMGLGKTVMTIALLLTHSQR---GGLSGIQSA 435 (812)
Q Consensus 402 GILADEMGLGKTIq~iaLI~~~~~~---~~~l~v~p~ 435 (812)
-|+.-..|-|||...+-.++..... ...++++|.
T Consensus 17 ~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~ 53 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPT 53 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeec
Confidence 5788899999999887555433322 245556664
No 253
>PRK10824 glutaredoxin-4; Provisional
Probab=42.56 E-value=1e+02 Score=28.75 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=44.4
Q ss_pred CCeEEEEcC------cHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCC-cEEEEEeCCCCcc
Q 003540 741 GSKSILFSQ------WTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNN-IMVSDSSFLKDFF 805 (812)
Q Consensus 741 ~~KvVVFSQ------fts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~-~~VlLlSlrAGG~ 805 (812)
.++||||+. |=.+=......|+..|+.|..+|=.-....|. .+.++..-+. +.||+=..-.||.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcCh
Confidence 589999998 45577777788888888877766544444444 4666655443 5788877766775
No 254
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=42.35 E-value=1.3e+02 Score=38.13 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCCCCCccccccccccC--------------------------------------------------------------
Q 003540 690 GLCPVCRKTISRQDLITA-------------------------------------------------------------- 707 (812)
Q Consensus 690 ~~CP~Cr~~i~~~~l~~~-------------------------------------------------------------- 707 (812)
..||+|+..++...|..-
T Consensus 9 ~~CpNCGG~isseRL~~glpCe~CLp~~~~~~~~~~l~~~L~~~~tLk~~~~~~~~~~e~e~~~~fF~k~~G~~~ws~QR 88 (1187)
T COG1110 9 SSCPNCGGDISSERLEKGLPCERCLPEDTETSGEALLYNALRERKTLKNLEFFRRYLWEYEEFEEFFKKATGFRPWSAQR 88 (1187)
T ss_pred ccCCCCCCcCcHHHHhcCCCchhccCCccccccHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q ss_pred ----------------CCCCccccccccccccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCC-----C
Q 003540 708 ----------------PTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNN-----I 766 (812)
Q Consensus 708 ----------------~~~~~~~~~~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~g-----i 766 (812)
|+ ..+|....+-.-.-+-..|.|+++.-.-+....-..+.|.... .
T Consensus 89 ~WakR~~rg~SFaiiAPT-------------GvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 89 VWAKRLVRGKSFAIIAPT-------------GVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred HHHHHHHcCCceEEEcCC-------------CCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Q ss_pred CEEE-EeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 767 PFLR-LDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 767 ~~~r-lDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
.... |||.++.++++.++++|.+++ ..||+.|.
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gd-fdIlitTs 189 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGD-FDILITTS 189 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCC-ccEEEEeH
No 255
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=41.65 E-value=32 Score=23.68 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=22.2
Q ss_pred ccceeeeecCCCceeEEeecccCcccccCCc
Q 003540 364 PCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (812)
Q Consensus 364 plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~ 394 (812)
+.|++..-++ +..||+|..|++.+-+.|.
T Consensus 3 ~gW~~~~~~~--g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPD--GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCC--CCEEEEECCCCCEEcCCCC
Confidence 4577765554 5689999999998888774
No 256
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=24 Score=38.73 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=33.2
Q ss_pred hhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcCCC
Q 003540 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (812)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 49 (812)
.++++.|.+|=++..- -.....|.++++|++.|||+||....
T Consensus 7 ~~lv~~fl~It~~~t~-e~A~q~L~~~~~~le~ai~Lffe~~~ 48 (356)
T KOG1364|consen 7 RALVSKFLAITVQQTV-EIATQYLSAADWDLEAAINLFFEHGG 48 (356)
T ss_pred HHHHHHHHHHhccccH-HHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 5678899999885444 24556679999999999999999643
No 257
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=41.04 E-value=33 Score=43.20 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCccc----c-cCCcccccccCceeecCCCC
Q 003540 336 RPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEAT----I-EFPSTLQMARGGILADAMGL 410 (812)
Q Consensus 336 rpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s----~-~~P~~~~~~~GGILADEMGL 410 (812)
.|||.+||.=.+.-=.+...... +..+|.||.=-.-. - ..........+--+.-+-|-
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~-----------------~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGt 70 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASA-----------------DPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGT 70 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCC-----------------ccccccCcccccchhhccccccccccCccceEEEEeCCCC
Confidence 89999999999876444332211 11245555410000 0 00001112356677778899
Q ss_pred hhHHHHHHHHHhcccCC---CCcccccC
Q 003540 411 GKTVMTIALLLTHSQRG---GLSGIQSA 435 (812)
Q Consensus 411 GKTIq~iaLI~~~~~~~---~~l~v~p~ 435 (812)
|||.+++.+|....... ..++++|.
T Consensus 71 GKT~~~~~~i~~l~~~~~~~~fii~vp~ 98 (986)
T PRK15483 71 GKTYVYTRLMYELHQKYGLFKFIIVVPT 98 (986)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 99999999987665442 35667775
No 258
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.50 E-value=1.5e+02 Score=33.68 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcC-cHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQ-WTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLK 785 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQ-fts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~ 785 (812)
.|+-|.++-..+..+.+.|++||+... |-.+..+++..|.+.||.+..+|.+......++++.
T Consensus 84 fsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~ 147 (396)
T COG0626 84 FSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE 147 (396)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc
Confidence 477888888877777788999998887 999999999999999999998998865554444443
No 259
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.26 E-value=14 Score=39.18 Aligned_cols=37 Identities=32% Similarity=0.673 Sum_probs=28.0
Q ss_pred CCcchhchhhhhhhhcC-----------CCCCCCCCCCcccccccccc
Q 003540 670 PCAHRLCRECLLGSWKT-----------PTSGLCPVCRKTISRQDLIT 706 (812)
Q Consensus 670 ~C~H~~C~~Cl~~~~~~-----------~~~~~CP~Cr~~i~~~~l~~ 706 (812)
-|....|.+|+..++.. .....||+||+.+-..|+-.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 37888999999987632 23578999999887766543
No 260
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=40.24 E-value=8.9 Score=29.63 Aligned_cols=40 Identities=30% Similarity=0.806 Sum_probs=24.9
Q ss_pred CCcccccc--ccccccCCc-----chhchhhhhhhhcCCCCCCCCCC
Q 003540 656 CPICLEAF--EDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVC 695 (812)
Q Consensus 656 C~iC~~~~--~~~~vt~C~-----H~~C~~Cl~~~~~~~~~~~CP~C 695 (812)
|-||.+.- +.+.+.||. ...-.+|+..++.......|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 66888732 236788874 34567899999887666778876
No 261
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=40.05 E-value=10 Score=29.66 Aligned_cols=45 Identities=27% Similarity=0.540 Sum_probs=21.6
Q ss_pred CCCCcccccccccccc-CCcchhchhhh--hhhhcCCCCCCCCCCCcc
Q 003540 654 GECPICLEAFEDAVLT-PCAHRLCRECL--LGSWKTPTSGLCPVCRKT 698 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt-~C~H~~C~~Cl--~~~~~~~~~~~CP~Cr~~ 698 (812)
..||+....+.-|+-. .|.|.-|.+-. ..+......-+||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3589999988888855 59999887652 233333445789999874
No 262
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.95 E-value=21 Score=38.38 Aligned_cols=49 Identities=24% Similarity=0.725 Sum_probs=32.3
Q ss_pred CCCCCcccc--cc-----------------ccccccCCcchhchhhhhhhhcC--------CCCCCCCCCCcccccc
Q 003540 653 QGECPICLE--AF-----------------EDAVLTPCAHRLCRECLLGSWKT--------PTSGLCPVCRKTISRQ 702 (812)
Q Consensus 653 ~~eC~iC~~--~~-----------------~~~~vt~C~H~~C~~Cl~~~~~~--------~~~~~CP~Cr~~i~~~ 702 (812)
..+||+|.. +. .+....||+|.. .+=-..||.. .-.+.||-|-.++.-.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 468999986 21 234578999984 4444456642 2367999999887543
No 263
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=39.43 E-value=22 Score=42.82 Aligned_cols=57 Identities=23% Similarity=0.589 Sum_probs=46.2
Q ss_pred CCCCCCcccc--ccccccccCCcch-----hchhhhhhhhcCCCCCCCCCCCccccccccccCC
Q 003540 652 EQGECPICLE--AFEDAVLTPCAHR-----LCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (812)
Q Consensus 652 ~~~eC~iC~~--~~~~~~vt~C~H~-----~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (812)
+...|.||.. ..++|..-||.-. ..++|+.+|+......+|-.|.-++.-.+++...
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~ 74 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKED 74 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccC
Confidence 3468999975 5678888888533 4679999999999999999999999888777643
No 264
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=38.35 E-value=95 Score=39.14 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcc-CCCeEEEEcCcHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 728 AVLLKELENLCL-SGSKSILFSQWTAFLDLLQIPLSR----NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 728 ~aLl~~L~~l~~-~~~KvVVFSQfts~LdlIe~~L~~----~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
..+.+.|.++.. .+.+++||.....+++.+...|.. .++.. +..... ..|.+++++|++.++ .|||. +..
T Consensus 660 ~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~-~iLlg-t~s 734 (850)
T TIGR01407 660 QEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEK-AILLG-TSS 734 (850)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCC-eEEEE-cce
Confidence 355555655533 356899999999999999988875 34443 333333 589999999998654 46654 466
Q ss_pred Ccccc
Q 003540 803 DFFSL 807 (812)
Q Consensus 803 GG~GL 807 (812)
-.+|+
T Consensus 735 f~EGV 739 (850)
T TIGR01407 735 FWEGV 739 (850)
T ss_pred eeccc
Confidence 67776
No 265
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=37.76 E-value=50 Score=26.82 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.0
Q ss_pred hHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcCCCC
Q 003540 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50 (812)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 50 (812)
..+..++-|||. -|+.+|...|..|+.|+..|++-.+...+|
T Consensus 7 k~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~qD~F 48 (60)
T PF06972_consen 7 KTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLSQDPF 48 (60)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHhcCcH
Confidence 456778889998 666789899999999999999998886544
No 266
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.50 E-value=28 Score=37.97 Aligned_cols=47 Identities=40% Similarity=0.859 Sum_probs=34.4
Q ss_pred CCCCCcccccc--cccccc--CCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 653 QGECPICLEAF--EDAVLT--PCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 653 ~~eC~iC~~~~--~~~~vt--~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
...||||.+++ .+...+ +|++..|..|+..... ....||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~--~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD--GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc--cCCCCCccCCcccc
Confidence 37899999965 344444 4788889999876544 46899999976544
No 267
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=36.39 E-value=88 Score=39.38 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHH----HHHHhCC----CCEEEEeCCCCHHHHHHHHHHhhcCCCcEEE
Q 003540 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQ----IPLSRNN----IPFLRLDGTLNQQQREKVLKQFSEDNNIMVS 796 (812)
Q Consensus 725 sKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe----~~L~~~g----i~~~rlDGs~s~~~R~~~I~~F~~~~~~~Vl 796 (812)
++...+-.++..+..++-|.++|.-+.....++. ..+.+.+ .....+.|.+...+|.++...|+++.- -.
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~--~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL--LG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc--cE
Confidence 6777777777777778999999999999999996 4555556 567889999999999999999999874 34
Q ss_pred EEeCCCCccccc
Q 003540 797 DSSFLKDFFSLV 808 (812)
Q Consensus 797 LlSlrAGG~GL~ 808 (812)
++|+.|-=+|+.
T Consensus 368 ~~st~Alelgid 379 (851)
T COG1205 368 VIATNALELGID 379 (851)
T ss_pred Eecchhhhhcee
Confidence 667777666654
No 268
>PLN02436 cellulose synthase A
Probab=36.22 E-value=19 Score=45.25 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=36.8
Q ss_pred cCCCCCCccccccc----ccccc---CCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 651 GEQGECPICLEAFE----DAVLT---PCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 651 ~~~~eC~iC~~~~~----~~~vt---~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.....|.||.+.+. ..... .|+-..|+.|. +|-+......||.|+.....
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 34458999998542 22222 37888999999 77777778999999988763
No 269
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.13 E-value=2.4e+02 Score=28.83 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=51.9
Q ss_pred CCCCCCCCccccccccccCCCCCc----------cc---------cc-cccccccchhHHHHHHHHHHHccCCCeEEEEc
Q 003540 689 SGLCPVCRKTISRQDLITAPTGSR----------FQ---------VD-IEKNWVESTKIAVLLKELENLCLSGSKSILFS 748 (812)
Q Consensus 689 ~~~CP~Cr~~i~~~~l~~~~~~~~----------~~---------~~-~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFS 748 (812)
...|+.|..+-....++.+...+. |. +. ..+.....-++..|++.+++ ..-+-||+=+
T Consensus 65 ~~~C~IC~d~~Rd~~~iCVVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~--~~v~EVIlAt 142 (195)
T TIGR00615 65 QEVCNICSDERRDNSVICVVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQE--ESVKEVILAT 142 (195)
T ss_pred CCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhc--CCCcEEEEeC
Confidence 457999988877666555543321 10 00 11111234577777776653 1233444444
Q ss_pred CcH----HHHHHHHHHHHhCCCCEEEEeCCCCH
Q 003540 749 QWT----AFLDLLQIPLSRNNIPFLRLDGTLNQ 777 (812)
Q Consensus 749 Qft----s~LdlIe~~L~~~gi~~~rlDGs~s~ 777 (812)
..| .+..+|.+.|+..++++.|+-=.+|.
T Consensus 143 ~~tvEGe~Ta~yi~~~lk~~~ikvtRlA~GiP~ 175 (195)
T TIGR00615 143 NPTVEGEATALYIARLLQPFGVKVTRIASGLPV 175 (195)
T ss_pred CCCchHHHHHHHHHHHhhhcCCcEEeeeecCCC
Confidence 443 67889999999889999998766553
No 270
>PLN02189 cellulose synthase
Probab=36.03 E-value=21 Score=44.88 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=36.9
Q ss_pred cCCCCCCccccccc----cccc---cCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 651 GEQGECPICLEAFE----DAVL---TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 651 ~~~~eC~iC~~~~~----~~~v---t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.....|.||.+.+. .... -.|+-..|+.|. +|-+......||.|+.....
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 34458999998643 2222 247888999999 77777778999999998763
No 271
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=35.84 E-value=25 Score=27.80 Aligned_cols=38 Identities=24% Similarity=0.628 Sum_probs=24.2
Q ss_pred CCCCccccccccccccCCcchhchhhhhhhhcCCCCCCCCCCCcc
Q 003540 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (812)
Q Consensus 654 ~eC~iC~~~~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~ 698 (812)
..||.|.+.++. ..++.-|............||.|...
T Consensus 3 f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 3 FTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred cCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 579999884332 23445555555544556889999863
No 272
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=34.72 E-value=1.6e+02 Score=37.02 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCC-CCHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT-LNQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs-~s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
...|..++++.+.++.+.|.-|||-+.....=+.|...|.+.||++-.++-. ....+=+.+|.+=-... .|-+.+ .
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIAT-N 497 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIAT-N 497 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEec-c
Confidence 4689999999999998899999999999999999999999999999999987 34444455666532222 354444 5
Q ss_pred CCccc
Q 003540 802 KDFFS 806 (812)
Q Consensus 802 AGG~G 806 (812)
-+|-|
T Consensus 498 MAGRG 502 (939)
T PRK12902 498 MAGRG 502 (939)
T ss_pred CCCCC
Confidence 55555
No 273
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=34.57 E-value=19 Score=38.70 Aligned_cols=46 Identities=35% Similarity=0.651 Sum_probs=37.8
Q ss_pred CCCCccccc----cccccccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 654 GECPICLEA----FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 654 ~eC~iC~~~----~~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
..||||.+. ...+.+.+|+|..-..|+.++.... =.||.|.++..+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~--y~CP~C~~~~d~ 208 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG--YTCPICSKPGDM 208 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC--CCCCcccchHHH
Confidence 459999984 4668889999999999999998766 899999994333
No 274
>PTZ00062 glutaredoxin; Provisional
Probab=33.84 E-value=1.8e+02 Score=30.02 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=52.4
Q ss_pred HHHHHHHHHccCCCeEEEEcC------cHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCC-cEEEEEeCC
Q 003540 729 VLLKELENLCLSGSKSILFSQ------WTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNN-IMVSDSSFL 801 (812)
Q Consensus 729 aLl~~L~~l~~~~~KvVVFSQ------fts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~-~~VlLlSlr 801 (812)
.+.+.++++. ..++|+||+. +=.+=..+...|+..|+.|.-+|=....+.|+.+. ++..-+. +.|++=.--
T Consensus 101 ~~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 101 DTVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEECCEE
Confidence 3455555553 3689999988 55677778888899999999999887776666644 5665544 456654444
Q ss_pred CCcccc
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
.||.-.
T Consensus 179 IGG~d~ 184 (204)
T PTZ00062 179 IGGHDI 184 (204)
T ss_pred EcChHH
Confidence 566543
No 275
>PLN02248 cellulose synthase-like protein
Probab=33.44 E-value=26 Score=44.30 Aligned_cols=34 Identities=32% Similarity=0.981 Sum_probs=28.2
Q ss_pred cCCcchhchhhhhhhhcCCCCCCCCCCCcccccccc
Q 003540 669 TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (812)
Q Consensus 669 t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l 704 (812)
-.|.+..|++|..+.++. .+.||.|.++....++
T Consensus 148 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 148 CECGFKICRDCYIDAVKS--GGICPGCKEPYKVTDL 181 (1135)
T ss_pred ccccchhHHhHhhhhhhc--CCCCCCCccccccccc
Confidence 358999999999998876 7799999998865443
No 276
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.37 E-value=1.8e+02 Score=35.51 Aligned_cols=78 Identities=12% Similarity=-0.025 Sum_probs=64.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC-C-CCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN-N-IPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSF 800 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~-g-i~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSl 800 (812)
.|+|.+..++++.+....|..+||.---.+...-+...|... | -.++.++..++.++|.+.-.+..++. .+|+ +.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~-~~IV-iGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ-ARVV-VGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC-CcEE-EEc
Confidence 489999999999999888999999998888888888888753 4 67999999999999999998887664 3454 444
Q ss_pred CC
Q 003540 801 LK 802 (812)
Q Consensus 801 rA 802 (812)
|.
T Consensus 248 RS 249 (665)
T PRK14873 248 RS 249 (665)
T ss_pred ce
Confidence 54
No 277
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=31.74 E-value=54 Score=22.19 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=20.7
Q ss_pred cceeeeecCCCceeEEeecccCcccccCCc
Q 003540 365 CWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (812)
Q Consensus 365 lW~~~~~~d~~~~~fY~N~~tG~~s~~~P~ 394 (812)
.|+...-.+ +..||+|..|++.+-+.|.
T Consensus 3 ~W~~~~~~~--g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 3 GWEERWDPD--GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCEEEECCC--CCEEEEECCCCCEeCCCCC
Confidence 466554333 5689999999998888774
No 278
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=31.45 E-value=1.9e+02 Score=35.47 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHH----HHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEE
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLL----QIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDS 798 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlI----e~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLl 798 (812)
.|+|..+.+-.+......|.+++|.+.-.....-+ ...+...|++...++|+++.++|.++++...+.. +.|++.
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~IvVg 370 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADIVIG 370 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCEEEc
Confidence 58998755544433345688999999877665544 3444455899999999999999999999988753 345554
Q ss_pred e
Q 003540 799 S 799 (812)
Q Consensus 799 S 799 (812)
|
T Consensus 371 T 371 (681)
T PRK10917 371 T 371 (681)
T ss_pred h
Confidence 4
No 279
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=31.35 E-value=51 Score=40.62 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=22.7
Q ss_pred cCceeecCCCChhHHHHHHHHH-hcccCCCCcccccCC
Q 003540 400 RGGILADAMGLGKTVMTIALLL-THSQRGGLSGIQSAS 436 (812)
Q Consensus 400 ~GGILADEMGLGKTIq~iaLI~-~~~~~~~~l~v~p~s 436 (812)
.|+|.--.-|-|||+.++--+. ......++.+++|..
T Consensus 84 ~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~ 121 (762)
T TIGR03714 84 QGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTND 121 (762)
T ss_pred CCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCH
Confidence 3678877889999998754332 222223456666643
No 280
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.81 E-value=45 Score=26.77 Aligned_cols=44 Identities=23% Similarity=0.655 Sum_probs=28.7
Q ss_pred CCCCcccccc--cc--ccccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 654 GECPICLEAF--ED--AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 654 ~eC~iC~~~~--~~--~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
..|..|...+ +. +.|-.-.-.||.+|....+ ...||+|...+-.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l----~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML----NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh----cCcCcCCCCcccc
Confidence 4567776632 22 3333344579999998765 4689999887644
No 281
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=30.28 E-value=55 Score=33.15 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhcccCCCcccccccCCccceeeeecCCCceeEEeecccCcccccCCcccccccC-ceeecCCCChh
Q 003540 334 ELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARG-GILADAMGLGK 412 (812)
Q Consensus 334 ~LrpyQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~G-GILADEMGLGK 412 (812)
+|-+.|++|+.-++.. .+ .++.--.|-||
T Consensus 1 ~ln~~Q~~Ai~~~~~~--------------------------------------------------~~~~~i~GpPGTGK 30 (236)
T PF13086_consen 1 KLNESQREAIQSALSS--------------------------------------------------NGITLIQGPPGTGK 30 (236)
T ss_dssp ---HHHHHHHHHHCTS--------------------------------------------------SE-EEEE-STTSSH
T ss_pred CCCHHHHHHHHHHHcC--------------------------------------------------CCCEEEECCCCCCh
Q ss_pred HHHHHHHHHhc---------ccCCCCcccccC
Q 003540 413 TVMTIALLLTH---------SQRGGLSGIQSA 435 (812)
Q Consensus 413 TIq~iaLI~~~---------~~~~~~l~v~p~ 435 (812)
|-...+++... ......++++|.
T Consensus 31 T~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s 62 (236)
T PF13086_consen 31 TTTLASIIAQLLQRFKSRSADRGKKILVVSPS 62 (236)
T ss_dssp HHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred HHHHHHHHHHhccchhhhhhhccccceeecCC
No 282
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.01 E-value=34 Score=28.72 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=29.3
Q ss_pred CCCcccc--cc--ccccccCCcchhchhhhhhhhcCCCCCCCCCCCcccccc
Q 003540 655 ECPICLE--AF--EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (812)
Q Consensus 655 eC~iC~~--~~--~~~~vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~ 702 (812)
.|.-|.. +. .+..|-.-.+.||.+|.+..+ ...||+|...+..+
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l----~g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL----HGLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh----cCcCCCCCchhhcC
Confidence 4555654 22 344555567899999987644 57899998766443
No 283
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=29.97 E-value=2e+02 Score=35.95 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=61.9
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCC-CHHHHHHHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL-NQQQREKVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~-s~~~R~~~I~~F~~~~~~~VlLlSlr 801 (812)
.-.|..++++.+.+..+.|.-|||-+.....=+.|...|...||++-.+...- ...+=+++|.+ ....-.|-+ +|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTI-ATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITI-ATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEE-ecc
Confidence 45799999999999888899999999999999999999999999999999873 33444556665 222223544 445
Q ss_pred CCccc
Q 003540 802 KDFFS 806 (812)
Q Consensus 802 AGG~G 806 (812)
-+|-|
T Consensus 483 MAGRG 487 (870)
T CHL00122 483 MAGRG 487 (870)
T ss_pred ccCCC
Confidence 55555
No 284
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=29.39 E-value=1.2e+02 Score=37.95 Aligned_cols=80 Identities=8% Similarity=0.078 Sum_probs=60.2
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
...|..++++.+.++.+.|.-|||-+.+...-+.|...|.+.||++-.|.-.-. .+-+.+|. +....-.|-+.+ .-
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~GaVTIAT-NM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPGALTIAT-NM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCCcEEEec-cC
Confidence 468999999999999999999999999999999999999999999987777622 23334444 333333465555 44
Q ss_pred Cccc
Q 003540 803 DFFS 806 (812)
Q Consensus 803 GG~G 806 (812)
+|-|
T Consensus 507 AGRG 510 (913)
T PRK13103 507 AGRG 510 (913)
T ss_pred CCCC
Confidence 4444
No 285
>PRK00254 ski2-like helicase; Provisional
Probab=28.45 E-value=59 Score=40.13 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=22.3
Q ss_pred CceeecCCCChhHHHHH-HHHHhcc-cCCCCcccccC
Q 003540 401 GGILADAMGLGKTVMTI-ALLLTHS-QRGGLSGIQSA 435 (812)
Q Consensus 401 GGILADEMGLGKTIq~i-aLI~~~~-~~~~~l~v~p~ 435 (812)
..|++-.-|-|||+.+. +++.... .....+.++|.
T Consensus 41 nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~ 77 (720)
T PRK00254 41 NLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPL 77 (720)
T ss_pred cEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence 47888999999999884 4433222 22345556664
No 286
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.30 E-value=31 Score=43.57 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=35.8
Q ss_pred CCCCCCccccccc-----cccc--cCCcchhchhhhhhhhcCCCCCCCCCCCcccc
Q 003540 652 EQGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (812)
Q Consensus 652 ~~~eC~iC~~~~~-----~~~v--t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~ 700 (812)
....|.||.+.+. ++.+ -.|+-..|+.|. +|-+......||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 4458999998542 2222 258888999999 6777777889999998876
No 287
>PLN02400 cellulose synthase
Probab=27.75 E-value=34 Score=43.30 Aligned_cols=50 Identities=26% Similarity=0.598 Sum_probs=36.4
Q ss_pred cCCCCCCccccccc-----ccc--ccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 651 GEQGECPICLEAFE-----DAV--LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 651 ~~~~eC~iC~~~~~-----~~~--vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.....|.||.+.+. ++. --.|+-..|+.|. +|-+......||.|+.....
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCcccc
Confidence 34458999998542 222 2247888999998 67677778899999988763
No 288
>PRK13844 recombination protein RecR; Provisional
Probab=27.59 E-value=1.7e+02 Score=30.06 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCCCCCCCccccccccccCCCCCc----------cc---------cc-cccccccchhHHHHHHHHHHHccCCCeEEEEc
Q 003540 689 SGLCPVCRKTISRQDLITAPTGSR----------FQ---------VD-IEKNWVESTKIAVLLKELENLCLSGSKSILFS 748 (812)
Q Consensus 689 ~~~CP~Cr~~i~~~~l~~~~~~~~----------~~---------~~-~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFS 748 (812)
...|+.|..+-....++.+...+. +. +. ..+.....-++..|++.+++ ..-+-||+=+
T Consensus 69 ~~~C~IC~d~~Rd~~~iCVVE~~~Dv~aiE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~--~~v~EVIlAt 146 (200)
T PRK13844 69 DDVCNICSNTNRDDTKLCIIESMLDMIAIEEAGIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIAD--RKIDEVILAI 146 (200)
T ss_pred CCCCCCCCCCCCCCCEEEEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhc--CCCcEEEEeC
Confidence 457999988877666555443221 10 00 11112234567777766653 1234455555
Q ss_pred CcH----HHHHHHHHHHHhCCCCEEEEeCCCCH
Q 003540 749 QWT----AFLDLLQIPLSRNNIPFLRLDGTLNQ 777 (812)
Q Consensus 749 Qft----s~LdlIe~~L~~~gi~~~rlDGs~s~ 777 (812)
..| .+..+|.+.|+. ++++.|+-=++|.
T Consensus 147 ~~t~EGe~Ta~yi~~~lk~-~vkvtRlA~GiP~ 178 (200)
T PRK13844 147 SPTVEGETTAHFISQMIAK-DIKISRIGFGVPF 178 (200)
T ss_pred CCCccHHHHHHHHHHHhcC-CCcEEeeeecCcC
Confidence 544 678899999998 9999998766553
No 289
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.58 E-value=34 Score=29.31 Aligned_cols=50 Identities=24% Similarity=0.575 Sum_probs=19.4
Q ss_pred cCCCCCCccccccc-----ccc--ccCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 651 GEQGECPICLEAFE-----DAV--LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 651 ~~~~eC~iC~~~~~-----~~~--vt~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.....|.||.+.+- ++. --.|+...|+.|.+--. +.....||.|+.+...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-keg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-KEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-HTS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-hcCcccccccCCCccc
Confidence 34567999998542 122 23588889999976443 3456789999977654
No 290
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=27.46 E-value=2e+02 Score=28.01 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=44.2
Q ss_pred eEEEEcCc-------HHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc----CCCcEEEEEeCCCCc
Q 003540 743 KSILFSQW-------TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE----DNNIMVSDSSFLKDF 804 (812)
Q Consensus 743 KvVVFSQf-------ts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~----~~~~~VlLlSlrAGG 804 (812)
||+||+.. -..=..+...|+..++.|.-+|=++....|+++-+.... ..-++||+=.--.||
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG 73 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGG 73 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEec
Confidence 57788775 345566778888999999999999998888887776554 233567764443343
No 291
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=27.37 E-value=2.2e+02 Score=36.06 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH-HHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE-KVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~-~~I~~F~~~~~~~VlLlSlr 801 (812)
...|..++++.+.++.+.|.-|||-+.+...-+.|...|.+.||++..|+-. ..+++ ++|.+=-... .|-+ +|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak--~~~~Ea~iia~AG~~g--~VTI-ATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAK--NHAQEAEIIAGAGKLG--AVTV-ATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccc--hhhhHHHHHHhcCCCC--cEEE-eec
Confidence 3689999999999998889999999999999999999999999999999886 33444 4444332222 3544 445
Q ss_pred CCccc
Q 003540 802 KDFFS 806 (812)
Q Consensus 802 AGG~G 806 (812)
-+|-|
T Consensus 625 mAGRG 629 (970)
T PRK12899 625 MAGRG 629 (970)
T ss_pred cccCC
Confidence 55555
No 292
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.75 E-value=1.4e+02 Score=31.59 Aligned_cols=42 Identities=21% Similarity=0.425 Sum_probs=37.5
Q ss_pred CCCCCccccccccccccC-CcchhchhhhhhhhcCCCCCCCCC
Q 003540 653 QGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPV 694 (812)
Q Consensus 653 ~~eC~iC~~~~~~~~vt~-C~H~~C~~Cl~~~~~~~~~~~CP~ 694 (812)
+..|||-..++..|++.. |+|.|=++-++.++......+||+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 468999999999988875 999999999999998877889997
No 293
>PLN02195 cellulose synthase A
Probab=26.11 E-value=41 Score=42.12 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=35.5
Q ss_pred CCCCccccccc-----cccc--cCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 654 GECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 654 ~eC~iC~~~~~-----~~~v--t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
..|.||.+.+. ++.+ -.|+-..|+.|. +|-+......||.|......
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 57999998432 2322 258888999998 67777778899999998883
No 294
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=26.05 E-value=57 Score=39.90 Aligned_cols=59 Identities=25% Similarity=0.548 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHccCCCCCCcccccccc--cc--ccCCcchhchhhhhhhhcCC-----CCCCCCCCC
Q 003540 637 SRAYVQEVVEELQKGEQGECPICLEAFED--AV--LTPCAHRLCRECLLGSWKTP-----TSGLCPVCR 696 (812)
Q Consensus 637 ~~~~~~~~l~~l~~~~~~eC~iC~~~~~~--~~--vt~C~H~~C~~Cl~~~~~~~-----~~~~CP~Cr 696 (812)
...+.+.+++++. ....||.||++.|.. ++ =..|.|+|-..||..|-+.. ..-+||.|.
T Consensus 176 ~~~~~~~li~~l~-~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 176 DLTLTQSLIEQLS-NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred hHHHHHHHHHHHh-cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 3445555666554 455899999997653 22 33599999999999987642 345999998
No 295
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=25.99 E-value=46 Score=42.44 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred eeecCCCChhH-HHHHHHHHhcccCCCCcccccCCCC------------CCCCccccc----------------------
Q 003540 403 ILADAMGLGKT-VMTIALLLTHSQRGGLSGIQSASQP------------SDGGIEGYD---------------------- 447 (812)
Q Consensus 403 ILADEMGLGKT-Iq~iaLI~~~~~~~~~l~v~p~s~~------------~~w~~e~~~---------------------- 447 (812)
+||=|.|.||| +-|=|...+...-..+.+.+|++++ .+|.-.+..
T Consensus 619 LiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~v 698 (1139)
T COG1197 619 LICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKV 698 (1139)
T ss_pred eeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCc
Q ss_pred ----------------------ccccCCcccccCccchhhHHHhhhcceeccCCceeecccch
Q 003540 448 ----------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488 (812)
Q Consensus 448 ----------------------~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~P~sl 488 (812)
++||-|+.--+.....+-.+ ..-..+.+++||| |-.|
T Consensus 699 DIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr--~~VDvLTLSATPI--PRTL 757 (1139)
T COG1197 699 DIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELR--ANVDVLTLSATPI--PRTL 757 (1139)
T ss_pred cEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHHHh--ccCcEEEeeCCCC--cchH
No 296
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.90 E-value=1.5e+02 Score=36.60 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCEEEEeCCCCHHH--HHHHHHHhhcCCCcEEEEEe
Q 003540 765 NIPFLRLDGTLNQQQ--REKVLKQFSEDNNIMVSDSS 799 (812)
Q Consensus 765 gi~~~rlDGs~s~~~--R~~~I~~F~~~~~~~VlLlS 799 (812)
+.++.|+|+.+...+ =...++.|.+... .|||-|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~-dILiGT 541 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEA-DILIGT 541 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCC-Ceeecc
Confidence 567889998886543 4578999998663 354433
No 297
>PRK02362 ski2-like helicase; Provisional
Probab=25.84 E-value=76 Score=39.29 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=22.8
Q ss_pred CceeecCCCChhHHHHHHHHHhc-ccCCCCcccccC
Q 003540 401 GGILADAMGLGKTVMTIALLLTH-SQRGGLSGIQSA 435 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~-~~~~~~l~v~p~ 435 (812)
..|++=.-|-|||+.+.-.|+.. ...+..+.++|.
T Consensus 41 nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~ 76 (737)
T PRK02362 41 NLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPL 76 (737)
T ss_pred cEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeCh
Confidence 47888899999999875443332 233345556664
No 298
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=25.42 E-value=91 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=13.7
Q ss_pred HHHhcCCCHHHHHHHhh
Q 003540 29 ALHMANHDPAAAINIIF 45 (812)
Q Consensus 29 ~~~~~~~~~~~a~~~~~ 45 (812)
.|+.|+||+=+||..++
T Consensus 23 iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 23 ILQRCNGDVVQAIEQFL 39 (39)
T ss_pred HHHHcCCcHHHHHHHhC
Confidence 34799999999997653
No 299
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=25.26 E-value=84 Score=36.37 Aligned_cols=36 Identities=19% Similarity=-0.019 Sum_probs=21.3
Q ss_pred CceeecCCCChhHHHHHHHHHhcccC----CCCcccccCC
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQR----GGLSGIQSAS 436 (812)
Q Consensus 401 GGILADEMGLGKTIq~iaLI~~~~~~----~~~l~v~p~s 436 (812)
..|+.-.-|-|||...+.-++..... ...++++|..
T Consensus 43 dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 43 DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 36788899999998744333332221 1345666653
No 300
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.95 E-value=1.8e+02 Score=33.34 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcC-c--------------HHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQ-W--------------TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQ-f--------------ts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~ 788 (812)
|-.++.+++.++.+.+.|-|-|+|.- - ..+.++|+....-.|+..+|+...-+..--.++|+.+.
T Consensus 155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~ 234 (420)
T PRK14339 155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA 234 (420)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence 34577888888887777877777742 1 13566666554436777788843333334567889998
Q ss_pred cCC-CcEEEEEeCCCCccc
Q 003540 789 EDN-NIMVSDSSFLKDFFS 806 (812)
Q Consensus 789 ~~~-~~~VlLlSlrAGG~G 806 (812)
+.+ .+.-|-+.+.+|.--
T Consensus 235 ~~~~~~~~l~iglQSgsd~ 253 (420)
T PRK14339 235 KNPKICKSIHMPLQSGSSE 253 (420)
T ss_pred cCCCccCceEeCCccCCHH
Confidence 765 466677777777543
No 301
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.85 E-value=51 Score=26.06 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=15.1
Q ss_pred CCcchhchhhhhhhhcCCCCCCCCCCC
Q 003540 670 PCAHRLCRECLLGSWKTPTSGLCPVCR 696 (812)
Q Consensus 670 ~C~H~~C~~Cl~~~~~~~~~~~CP~Cr 696 (812)
.|.+.||.+| +.+-+..-..||.|.
T Consensus 26 ~C~~~FC~dC--D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDC--DVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHH--HHTTTTTS-SSSTT-
T ss_pred CCCCccccCc--ChhhhccccCCcCCC
Confidence 4789999999 344567778899884
No 302
>PRK00076 recR recombination protein RecR; Reviewed
Probab=24.54 E-value=5.3e+02 Score=26.41 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCCCCCCCccccccccccCCCCCc----------cc---------cc-cccccccchhHHHHHHHHHHHccCCCeEEEEc
Q 003540 689 SGLCPVCRKTISRQDLITAPTGSR----------FQ---------VD-IEKNWVESTKIAVLLKELENLCLSGSKSILFS 748 (812)
Q Consensus 689 ~~~CP~Cr~~i~~~~l~~~~~~~~----------~~---------~~-~~~~~~~SsKl~aLl~~L~~l~~~~~KvVVFS 748 (812)
...|+.|..+-....++.+...+. |. +. ..+.....-++..|++.+ + ..-.-||+=+
T Consensus 65 ~~~C~IC~d~~Rd~~~icVVE~~~Dv~aiE~s~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~ri-~--~~v~EVIlA~ 141 (196)
T PRK00076 65 QDPCEICSDPRRDQSLICVVESPADVLAIERTGEYRGLYHVLGGLLSPLDGIGPEDLNIDELLERL-D--GEVKEVILAT 141 (196)
T ss_pred CCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCcCceEEEEecCCcCCCCCCCccccCHHHHHHHH-h--CCCCEEEEeC
Confidence 457899988877666554433221 10 00 011112344677777766 2 2223344433
Q ss_pred CcH----HHHHHHHHHHHhCCCCEEEEeCCCCH
Q 003540 749 QWT----AFLDLLQIPLSRNNIPFLRLDGTLNQ 777 (812)
Q Consensus 749 Qft----s~LdlIe~~L~~~gi~~~rlDGs~s~ 777 (812)
..| .+..+|.+.|+..++++.|+-=.+|.
T Consensus 142 ~pt~EGe~Ta~yi~~~lk~~~ikvtRiA~GiP~ 174 (196)
T PRK00076 142 NPTVEGEATAHYIARLLKPLGVKVTRLAHGVPV 174 (196)
T ss_pred CCCchHHHHHHHHHHHHHHcCCCeeeeeeCCCC
Confidence 333 67889999999989999998766553
No 303
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.41 E-value=57 Score=31.43 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=28.2
Q ss_pred ccCCccceeeeecCCCceeEEeecccCcccccCCcccccccC
Q 003540 360 TTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARG 401 (812)
Q Consensus 360 ~~~~plW~~~~~~d~~~~~fY~N~~tG~~s~~~P~~~~~~~G 401 (812)
..+.|-|+...--. .+..+|+|.+|++---+.|.......|
T Consensus 5 ~~LP~~Wekr~Srs-~gr~YyfN~~T~~SqWe~P~~t~~~~~ 45 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRS-SGRPYYFNTETNESQWERPSGTSKSGG 45 (163)
T ss_pred ccCCchhheecccc-CCCcceeccccchhhccCCCccccccc
Confidence 34566787644322 344799999999999999986554444
No 304
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.38 E-value=4.7e+02 Score=25.83 Aligned_cols=74 Identities=11% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC--CCCEEE-EeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN--NIPFLR-LDGTLNQQQREKVLKQFSEDNNIMVSDSSFLK 802 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~r-lDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrA 802 (812)
+.+..+++.....+.++-++---...++-+...|.+. |+.++- .+|-+...+..+++++.+... +.++++.+.+
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~-pdiv~vglG~ 109 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG-ADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEECCC
Confidence 3444555555556889999999999999999888875 777766 799999888888888888765 4577776654
No 305
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=24.36 E-value=29 Score=26.86 Aligned_cols=33 Identities=36% Similarity=0.766 Sum_probs=21.0
Q ss_pred cccCC-cchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 667 VLTPC-AHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 667 ~vt~C-~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
.+..| .|-.|..|+.-.+. ....||.|.+++..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLPT 47 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-S--SSSEETTTTEE---
T ss_pred CeeeecchhHHHHHHHHHhc--cccCCCcccCcCcc
Confidence 33445 58899999987664 46799999988753
No 306
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.79 E-value=2e+02 Score=29.28 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHccCC-CeEEEEcCcH----HHHHHHHHHHHhCCCCEEEEeCCCCH
Q 003540 724 STKIAVLLKELENLCLSG-SKSILFSQWT----AFLDLLQIPLSRNNIPFLRLDGTLNQ 777 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~-~KvVVFSQft----s~LdlIe~~L~~~gi~~~rlDGs~s~ 777 (812)
.-++..|++.+.+ .. +-||+=+..| .+..+|.+.|+..++++.|+--.+|.
T Consensus 121 ~l~i~~L~~Rl~~---~~~~EvIlAtnpTvEGeaTA~YI~~~l~~~~ikvtRlA~GiPv 176 (198)
T COG0353 121 DLNIDELLQRLAE---GSIKEVILATNPTVEGEATALYIARLLKPLGLKVTRLAQGVPV 176 (198)
T ss_pred cccHHHHHHHHhc---CCCceEEEecCCCccchHHHHHHHHHHhhcCCeEEEEeecCcc
Confidence 4456666555543 22 2788887776 78999999999999999999766653
No 307
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.17 E-value=4.4e+02 Score=25.65 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 003540 548 ELTEAEKDFYEALFKRSKVKFDQFVEQ 574 (812)
Q Consensus 548 ~LS~~Er~~Y~~i~~~~~~~~~~~~~~ 574 (812)
+||..|-+.+..++.+-...|..+.+.
T Consensus 32 elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 32 ELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888877777776666544
No 308
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.17 E-value=2.2e+02 Score=33.02 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHHccCCCeEEEEcC-----c-------HHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC
Q 003540 724 STKIAVLLKELENLCLSGSKSILFSQ-----W-------TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN 791 (812)
Q Consensus 724 SsKl~aLl~~L~~l~~~~~KvVVFSQ-----f-------ts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~ 791 (812)
|-.++.+++.++.+.+.|-|-|+|+. | ..+.++++......|+..+|+.-.-+..-..++++.+.+.+
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~ 262 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP 262 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence 44578888888888777888888875 1 23666666655545665566643333344456777777654
Q ss_pred -CcEEEEEeCCCCc
Q 003540 792 -NIMVSDSSFLKDF 804 (812)
Q Consensus 792 -~~~VlLlSlrAGG 804 (812)
.+.-+-+++.+|.
T Consensus 263 ~~~~~v~lglQSgs 276 (459)
T PRK14338 263 KCCPHINLPVQAGD 276 (459)
T ss_pred ccccceecCcccCC
Confidence 3455556666654
No 309
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.06 E-value=3.2e+02 Score=27.30 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEE
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVS 796 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~Vl 796 (812)
..+.+-+.+++..|-|++|+|.-+ -.-++.+..+-|+.|+.=-+.-....=.+++.+++-++.-.||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~--e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvm 115 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNK--ESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVM 115 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCC--HHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEE
Confidence 445556666767799999999944 4577788888899997777776677778999999987754344
No 310
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=49 Score=39.81 Aligned_cols=46 Identities=28% Similarity=0.670 Sum_probs=37.4
Q ss_pred CCCccccccccccccCCcc-hhchhhhhhhhcCCC----CCCCCCCCcccc
Q 003540 655 ECPICLEAFEDAVLTPCAH-RLCRECLLGSWKTPT----SGLCPVCRKTIS 700 (812)
Q Consensus 655 eC~iC~~~~~~~~vt~C~H-~~C~~Cl~~~~~~~~----~~~CP~Cr~~i~ 700 (812)
.|.||....+-+..-.|+| ..|..|......-.. ..-||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999999999999999 999999987665444 456699998554
No 311
>PRK10638 glutaredoxin 3; Provisional
Probab=22.80 E-value=3.2e+02 Score=23.19 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=33.0
Q ss_pred eEEEEc-CcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Q 003540 743 KSILFS-QWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786 (812)
Q Consensus 743 KvVVFS-Qfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~ 786 (812)
+|+||+ .+-.+=..+...|+..|+.|..+|=......|+++.+.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~ 47 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKR 47 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 677887 45567777888899999999998887666666665443
No 312
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=22.53 E-value=1.9e+02 Score=36.84 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=59.6
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH-HHHHHhhcCCCcEEEEEeCC
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQRE-KVLKQFSEDNNIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~-~~I~~F~~~~~~~VlLlSlr 801 (812)
...|..|+++.+.++.+.|.-|||-+.+...=.+|...|...||++-.|.-.. .+|+ .+|.+=-... .|-+.+ .
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~--h~~EAeIVA~AG~~G--aVTIAT-N 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKL--HQKEAEIVAEAGQPG--TVTIAT-N 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccc--hhhHHHHHHhcCCCC--cEEEec-c
Confidence 46899999999999999999999999999999999999999999998887763 2343 4444322222 355555 4
Q ss_pred CCccc
Q 003540 802 KDFFS 806 (812)
Q Consensus 802 AGG~G 806 (812)
-+|-|
T Consensus 685 MAGRG 689 (1112)
T PRK12901 685 MAGRG 689 (1112)
T ss_pred CcCCC
Confidence 44444
No 313
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.32 E-value=48 Score=35.81 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=37.1
Q ss_pred CCCCcccc---ccccccccCCcchhchhhhhhhhcCCC-CCCCCCCCccccccc
Q 003540 654 GECPICLE---AFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQD 703 (812)
Q Consensus 654 ~eC~iC~~---~~~~~~vt~C~H~~C~~Cl~~~~~~~~-~~~CP~Cr~~i~~~~ 703 (812)
..||.--+ .-+-|+.+.|+|..-++-+...-+++. .-+||.|-.--...+
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~ 390 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYEN 390 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhh
Confidence 56776655 234588899999999999988877765 569999976544433
No 314
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.86 E-value=78 Score=35.82 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=36.1
Q ss_pred chhHHhhhhcccCCCCChHHHHHHHHhcCCCHHHHHHHhhcC
Q 003540 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (812)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 47 (812)
.+++.+++..|+-=.++..+|.++|+++-||.+|||.-.+.|
T Consensus 153 g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tG 194 (378)
T TIGR00601 153 GSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTG 194 (378)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 356778888887666777799999999999999999999999
No 315
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.56 E-value=5.1e+02 Score=25.58 Aligned_cols=75 Identities=11% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhC--CCCEE-EEeCCCCHHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003540 728 AVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRN--NIPFL-RLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKD 803 (812)
Q Consensus 728 ~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~--gi~~~-rlDGs~s~~~R~~~I~~F~~~~~~~VlLlSlrAG 803 (812)
+.+..+++.....+.++-++---...++-+...|.+. |+.++ ..+|-++..+-.++++.-+... +.|+++.+.+-
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~-pdiv~vglG~P 112 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG-PDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEECCCC
Confidence 3444445555455789999999999999999999886 77766 6778888899999999999754 35777766553
No 316
>PF12773 DZR: Double zinc ribbon
Probab=21.35 E-value=89 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=18.0
Q ss_pred chhchhhhhhhh-cCCCCCCCCCCCccccccc
Q 003540 673 HRLCRECLLGSW-KTPTSGLCPVCRKTISRQD 703 (812)
Q Consensus 673 H~~C~~Cl~~~~-~~~~~~~CP~Cr~~i~~~~ 703 (812)
..||..|-.... .......||.|...+....
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 345666644433 1233567888888766554
No 317
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.25 E-value=2.7e+02 Score=30.58 Aligned_cols=60 Identities=22% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-----CCCcEEEEEe
Q 003540 740 SGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSE-----DNNIMVSDSS 799 (812)
Q Consensus 740 ~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~-----~~~~~VlLlS 799 (812)
..++|||.--=...---.|..|+..||.+.|+-|+.-.+.=+++...|++ -.+++|.+++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 47899999888888888899999999999999999988888899999984 2456777765
No 318
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=21.17 E-value=4.4e+02 Score=21.57 Aligned_cols=55 Identities=5% Similarity=0.155 Sum_probs=35.7
Q ss_pred eEEEEcCc-HHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEE
Q 003540 743 KSILFSQW-TAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSD 797 (812)
Q Consensus 743 KvVVFSQf-ts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlL 797 (812)
+++||+.- -.+=......|+..|++|..+|=......+.++.+.-....-+.||+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56777764 45556677788889999999988776666666554433323344444
No 319
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=21.14 E-value=3.6e+02 Score=32.72 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHH----HhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEE
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPL----SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDS 798 (812)
Q Consensus 723 ~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L----~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLl 798 (812)
.|+|..+.+-.+......+.+++|-+.......-+...+ ...|++...++|+++.++|..+++...++. +.|++.
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~IiVg 344 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHLVVG 344 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCEEEe
Confidence 589987554433333356889999998776655544444 445899999999999999999999887653 345543
No 320
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=21.00 E-value=1.8e+02 Score=27.15 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHH-HccCCCeEEEEcCc-HHHHHHHHHHHHhCCCCEEEEeCCCC
Q 003540 725 TKIAVLLKELEN-LCLSGSKSILFSQW-TAFLDLLQIPLSRNNIPFLRLDGTLN 776 (812)
Q Consensus 725 sKl~aLl~~L~~-l~~~~~KvVVFSQf-ts~LdlIe~~L~~~gi~~~rlDGs~s 776 (812)
.++..+.+.+.+ -...+.++||+++- -..-......|+..|+....++|.++
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 344455544431 12447899999973 22223444778888999999999974
No 321
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.97 E-value=2.4e+02 Score=34.79 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=65.5
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEe
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR-NNIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSS 799 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~-~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~~VlLlS 799 (812)
..|+|.+..++.+.+..+.|..+||--.-.+.+.-+...+.. .|.+...++..++..+|...-.+..+... +|.+-+
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~-~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA-RVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc-eEEEEe
Confidence 469999999999999999999999998888877777766664 48899999999999999999999998763 566544
No 322
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=20.79 E-value=1.9e+02 Score=35.23 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=48.3
Q ss_pred ccchhHHHHHHHHHHHccCCCeEEEEcCcHHHHHHHHHHHHhCCCCEEEEeCCC
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTL 775 (812)
Q Consensus 722 ~~SsKl~aLl~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~ 775 (812)
...+|...+..++..+...+.+|+|.++.....|-|-..|...++.++|+.+..
T Consensus 182 PGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~ 235 (637)
T TIGR00376 182 PGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPA 235 (637)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCch
Confidence 358999999999999888889999999999999999999998899999997654
No 323
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=20.44 E-value=5.2e+02 Score=25.61 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=46.0
Q ss_pred cchhHHH-HHHHHHHHcc----CCCeEEEEcCcHHHHHHHHHHH----HhCCCCEEEEeCCCCHHHHHHHHHHhhcCCCc
Q 003540 723 ESTKIAV-LLKELENLCL----SGSKSILFSQWTAFLDLLQIPL----SRNNIPFLRLDGTLNQQQREKVLKQFSEDNNI 793 (812)
Q Consensus 723 ~SsKl~a-Ll~~L~~l~~----~~~KvVVFSQfts~LdlIe~~L----~~~gi~~~rlDGs~s~~~R~~~I~~F~~~~~~ 793 (812)
.++|... ++.++..+.. .+.|+||.+.....+.-+...+ ...++....+.|..+..++.+.+. .++
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 120 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RGP 120 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CCC
Confidence 5788543 4445555443 3668999998776665544433 335888899999988766654443 234
Q ss_pred EEEEEe
Q 003540 794 MVSDSS 799 (812)
Q Consensus 794 ~VlLlS 799 (812)
.|++.|
T Consensus 121 ~iiv~T 126 (203)
T cd00268 121 HIVVAT 126 (203)
T ss_pred CEEEEC
Confidence 577766
No 324
>PRK11032 hypothetical protein; Provisional
Probab=20.19 E-value=6.6e+02 Score=24.88 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 003540 548 ELTEAEKDFYEALFKRSKVKFDQFVEQ 574 (812)
Q Consensus 548 ~LS~~Er~~Y~~i~~~~~~~~~~~~~~ 574 (812)
+||..|.+++..++.+-...|..+.+.
T Consensus 42 elT~dEl~lv~~ylkRDL~ef~~~~~~ 68 (160)
T PRK11032 42 ELTRDEVDLITRAVRRDLEEFARSYEE 68 (160)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999988888887776543
No 325
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.09 E-value=57 Score=41.20 Aligned_cols=48 Identities=19% Similarity=0.610 Sum_probs=35.4
Q ss_pred CCCCCccccccc-----cccc--cCCcchhchhhhhhhhcCCCCCCCCCCCccccc
Q 003540 653 QGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (812)
Q Consensus 653 ~~eC~iC~~~~~-----~~~v--t~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~ 701 (812)
...|.||.+.+. ++.+ -.|+-..|+.|. +|-+......||.|..+...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 457999998532 2222 248888999999 66666778899999988763
Done!