Query 003540
Match_columns 812
No_of_seqs 328 out of 1889
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 17:27:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003540.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1591-1594//hhsearch_pdb/003540hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 378.5 15.1 330 325-807 227-639 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 367.2 14.2 337 326-807 47-483 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 333.8 17.2 319 321-807 25-408 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 209.1 17.8 83 722-807 486-570 (968)
5 1z5z_A Helicase of the SNF2/RA 1.0 1 1 204.3 15.9 167 518-807 12-179 (271)
6 1wp9_A ATP-dependent RNA helic 1.0 1 1 166.8 16.4 85 722-808 340-434 (494)
7 3hgt_A HDA1 complex subunit 3; 1.0 1 1 152.8 16.3 163 537-807 20-184 (328)
8 2fwr_A DNA repair protein RAD2 1.0 1 1 150.8 -1.0 298 331-808 90-409 (472)
9 4a2w_A RIG-I, retinoic acid in 1.0 1 1 146.3 12.8 85 722-807 610-708 (936)
10 4a2q_A RIG-I, retinoic acid in 1.0 1 1 137.1 13.4 85 722-807 610-708 (797)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=378.46 Aligned_cols=330 Identities=25% Similarity=0.345 Sum_probs=248.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 79996355699188999999998611189965111357843000111587711688533667532347853334568235
Q 003540 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (812)
Q Consensus 325 ~~pp~~l~~~Lr~yQkqaL~WMl~rE~~~~~~~~~~~~~plW~~y~~~d~~~~~fY~N~~sGe~s~~~P~~~~~~~GGIL 404 (812)
..||.....+|||||++|+.||+.... ..+||||
T Consensus 227 ~~p~~~~~~~Lr~yQ~egv~~l~~~~~----------------------------------------------~~~~~IL 260 (800)
T 3mwy_W 227 VQPPFIKGGELRDFQLTGINWMAFLWS----------------------------------------------KGDNGIL 260 (800)
T ss_dssp SCCTTCCSSCCCTHHHHHHHHHHHHHT----------------------------------------------TTCCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH----------------------------------------------CCCCEEE
T ss_conf 699865799758999999999999851----------------------------------------------3899899
Q ss_pred ECCCCCHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCC---------------------------------
Q ss_conf 4377870689999999822----468998663357788889964433---------------------------------
Q 003540 405 ADAMGLGKTVMTIALLLTH----SQRGGLSGIQSASQPSDGGIEGYD--------------------------------- 447 (812)
Q Consensus 405 ADEMGLGKTIq~LaLI~~~----~~~~~~l~v~p~s~~~~w~~e~~~--------------------------------- 447 (812)
||+||||||+|+|++|... ...++.++++|.+++.+|..|+..
T Consensus 261 ademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~ 340 (800)
T 3mwy_W 261 ADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKG 340 (800)
T ss_dssp CCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC----
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC
T ss_conf 82787532999999999999860779988999880389999999999779964999827777788988877622630013
Q ss_pred -------------------------------CCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCHHHHH--HH
Q ss_conf -------------------------------433588422457431116787642130015984332262114786--54
Q 003540 448 -------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--NK 494 (812)
Q Consensus 448 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~p~sll~qW--~~ 494 (812)
++||+|..++..++...........++++++|||+ ++++...| -.
T Consensus 341 ~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPi--qN~l~el~~ll~ 418 (800)
T 3mwy_W 341 KKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPL--QNNIKELAALVN 418 (800)
T ss_dssp -CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCC--SSCSHHHHHHHH
T ss_pred CCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCHHHHHHHHH
T ss_conf 445667889906999986499983377325641344441471019999999752243897227857--799999999999
Q ss_pred HHCC---------CCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 2049---------965589---7789999998622123103443465899722489980999980399999999999999
Q 003540 495 LIQK---------PYEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFK 562 (812)
Q Consensus 495 ~i~~---------Pfe~~~---~~~l~~L~~iL~p~~LRRtK~~~~~dG~plv~LPpk~~~iv~v~LS~~Er~~Y~~i~~ 562 (812)
|+.. .+.... ...+..|+.++.|+|+||+|.++..+ ||++.+.+++|+|++.|+.+|+.++.
T Consensus 419 fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~------LP~k~~~~v~v~ls~~q~~~Y~~i~~ 492 (800)
T 3mwy_W 419 FLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS------LPSKTERILRVELSDVQTEYYKNILT 492 (800)
T ss_dssp HHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT------SCCEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 858663674344232223146899999999997577753208766431------68827999970799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999984101101299999999986200689632136799610357999999985268875568989998468899
Q 003540 563 RSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQ 642 (812)
Q Consensus 563 ~~~~~~~~~~~~g~~~~~~~~il~~llrLRq~c~HP~Li~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (812)
.....+..... .....++..+++||++|+||.++.... .. ....... . ......
T Consensus 493 ~~~~~l~~~~~-----~~~~~~l~~l~~Lrk~~~hp~l~~~~~--------~~----~~~~~~~-----~-~~~~~~--- 546 (800)
T 3mwy_W 493 KNYSALTAGAK-----GGHFSLLNIMNELKKASNHPYLFDNAE--------ER----VLQKFGD-----G-KMTREN--- 546 (800)
T ss_dssp HCCC---------------CTHHHHHHHHHHHHHCGGGSSSHH--------HH----HCCCC----------CCSHH---
T ss_pred HHHHHHHHCCC-----CCHHHHHHHHHHHHHHHCCHHHHCCHH--------HH----HHHHCCC-----C-CCCHHH---
T ss_conf 99999861035-----454469999999998735865423557--------89----9886156-----6-555778---
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999970677999761001244411577520004555431048999999898865555552017999963001122345
Q 003540 643 EVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWV 722 (812)
Q Consensus 643 ~~l~~l~~~~~~eC~iC~~~~~~~~it~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~ 722 (812)
.+. ....
T Consensus 547 -~~~------------------------------------------------------------------------~l~~ 553 (800)
T 3mwy_W 547 -VLR------------------------------------------------------------------------GLIM 553 (800)
T ss_dssp -HHH------------------------------------------------------------------------HHHH
T ss_pred -HHH------------------------------------------------------------------------HHHH
T ss_conf -888------------------------------------------------------------------------7664
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCC-CCEEEEEECC
Q ss_conf 413599999999977018986999849387999999988729999899928999999999999751499-9289988078
Q 003540 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSSFL 801 (812)
Q Consensus 723 ~SsKi~aLi~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~vi~~F~~~~-~~~VLLlSlk 801 (812)
.|+|+.+|.++|..+...++|+||||||+.++++|+..|...|+.+.++||+|+.++|++++++|++++ ..+|||+|++
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 27699999999999752798189996359999999999986799789996999999999999996089998259997454
Q ss_pred CCCCCC
Q ss_conf 786555
Q 003540 802 KDFFSL 807 (812)
Q Consensus 802 AGG~GL 807 (812)
|||+||
T Consensus 634 agg~Gl 639 (800)
T 3mwy_W 634 AGGLGI 639 (800)
T ss_dssp HHTTTC
T ss_pred CCCCCC
T ss_conf 456787
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=367.20 Aligned_cols=337 Identities=25% Similarity=0.326 Sum_probs=243.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99963556991889999999986111899651113578430001115877116885336675323478533345682354
Q 003540 326 EPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405 (812)
Q Consensus 326 ~pp~~l~~~Lr~yQkqaL~WMl~rE~~~~~~~~~~~~~plW~~y~~~d~~~~~fY~N~~sGe~s~~~P~~~~~~~GGILA 405 (812)
..++.+...|||||++|+.||+....+.. ....+|||||
T Consensus 47 ~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~-----------------------------------------~~~~~g~ILa 85 (644)
T 1z3i_X 47 VVDPVLSKVLRPHQREGVKFLWDCVTGRR-----------------------------------------IENSYGCIMA 85 (644)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHTTSS-----------------------------------------STTCCEEEEC
T ss_pred EECHHHHHCCCHHHHHHHHHHHHHHHCCC-----------------------------------------CCCCCCEEEE
T ss_conf 51856400351999999999998423354-----------------------------------------4588875961
Q ss_pred CCCCCHHHHHHHHHHHHCCCC--------CCCCCCCCCCCCCCCCCCCCCC-----------------------------
Q ss_conf 377870689999999822468--------9986633577888899644334-----------------------------
Q 003540 406 DAMGLGKTVMTIALLLTHSQR--------GGLSGIQSASQPSDGGIEGYDI----------------------------- 448 (812)
Q Consensus 406 DEMGLGKTIq~LaLI~~~~~~--------~~~l~v~p~s~~~~w~~e~~~~----------------------------- 448 (812)
|+||||||+|+|++|...... .+.++++|.+++.+|..|+..|
T Consensus 86 d~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (644)
T 1z3i_X 86 DEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ 165 (644)
T ss_dssp CCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 07874299999999999997486656777857999658998879999999758872599980898899999999998733
Q ss_pred --------------------------------CCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCHHHH-----
Q ss_conf --------------------------------3358842245743111678764213001598433226211478-----
Q 003540 449 --------------------------------SDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQ----- 491 (812)
Q Consensus 449 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~p~sll~q----- 491 (812)
+||+|.+++..++.+.........++++++|||+ .+++...
T Consensus 166 ~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPi--qN~l~El~sll~ 243 (644)
T 1z3i_X 166 GMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPI--QNDLLEYFSLVH 243 (644)
T ss_dssp SSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCS--GGGGGGCHHHHH
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCC--CCCHHHHHHHHH
T ss_conf 777787579963899876578750488657998786224780459999998555673799846734--588999999998
Q ss_pred ------------HHHHHCCCCCCC------------CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf ------------654204996558------------97789999998622123103443465899722489980999980
Q 003540 492 ------------WNKLIQKPYEEG------------DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547 (812)
Q Consensus 492 ------------W~~~i~~Pfe~~------------~~~~l~~L~~iL~p~~LRRtK~~~~~dG~plv~LPpk~~~iv~v 547 (812)
|+..|..|+..+ ....+..|+.++.|+|+||+|+++..+ ||+|.+.+++|
T Consensus 244 fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~------LP~k~~~~v~~ 317 (644)
T 1z3i_X 244 FVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY------LPVKIEQVVCC 317 (644)
T ss_dssp HHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT------SCCEEEEEEEE
T ss_pred HHCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEEE
T ss_conf 618876899999998632615416776778889999999999999998899987108767642------79836999983
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 39999999999999999999999984101101299999999986200689632136799610357999999985268875
Q 003540 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNA 627 (812)
Q Consensus 548 ~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~llrLRq~c~HP~Li~~~~~~~~~~dl~~l~~~~~~~~~~~ 627 (812)
+|++.|+.+|+.+........ .... .+....++..+++|||+|+||.++... . ......
T Consensus 318 ~ls~~q~~lY~~~~~~~~~~~--~~~~---g~~~~~~l~~l~~Lrk~c~hp~l~~~~--------~-------~~~~~~- 376 (644)
T 1z3i_X 318 NLTPLQKELYKLFLKQAKPVE--SLQT---GKISVSSLSSITSLKKLCNHPALIYEK--------C-------LTGEEG- 376 (644)
T ss_dssp CCCHHHHHHHHHHHHHHCGGG--SSCT---TCCCHHHHHHHHHHHHHHHCTHHHHHH--------H-------HHTCTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHC---CCCCHHHHHHHHHHHHHHCCHHHHHHH--------H-------HCCCCH-
T ss_conf 799899999999999899999--8762---762145999999999995799988888--------7-------415400-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56898999846889999999970677999761001244411577520004555431048999999898865555552017
Q 003540 628 LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (812)
Q Consensus 628 ~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~it~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (812)
...+.+.+ |. ..+.
T Consensus 377 ----------------------------~~~~~~~~-----------------------------~~---~~~~------ 390 (644)
T 1z3i_X 377 ----------------------------FDGALDLF-----------------------------PQ---NYST------ 390 (644)
T ss_dssp ----------------------------CTTGGGTS-----------------------------CS---SCCS------
T ss_pred ----------------------------HHHHHHHC-----------------------------CC---CCCC------
T ss_conf ----------------------------35577645-----------------------------42---1110------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 99996300112234541359999999997701-89869998493879999999887299998999289999999999997
Q 003540 708 PTGSRFQVDIEKNWVESTKIAVLLKELENLCL-SGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQ 786 (812)
Q Consensus 708 ~~~~~~~~~~~~~~~~SsKi~aLi~~L~~l~~-~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~vi~~ 786 (812)
.......|+|+..|..+|..+.. .++|+||||||+.++++|+..|...|+.+.++||+|+.++|++++++
T Consensus 391 ---------~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~ 461 (644)
T 1z3i_X 391 ---------KAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVER 461 (644)
T ss_dssp ---------SSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHH
T ss_pred ---------CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf ---------00570117489999999999864699879999805999999999999779978998399999999999999
Q ss_pred HHCCCC-CEEEEEECCCCCCCC
Q ss_conf 514999-289988078786555
Q 003540 787 FSEDNN-IMVSDSSFLKDFFSL 807 (812)
Q Consensus 787 F~~~~~-~~VLLlSlkAGG~GL 807 (812)
|++++. .+|+|+|+++||+||
T Consensus 462 F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 462 FNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HHSTTCCCCEEEEEGGGSCTTC
T ss_pred HCCCCCCCEEEEEECCCCCCCC
T ss_conf 6399999679998445566784
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=333.79 Aligned_cols=319 Identities=25% Similarity=0.356 Sum_probs=250.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 88667999635569918899999999861118996511135784300011158771168853366753234785333456
Q 003540 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMAR 400 (812)
Q Consensus 321 ~l~e~~pp~~l~~~Lr~yQkqaL~WMl~rE~~~~~~~~~~~~~plW~~y~~~d~~~~~fY~N~~sGe~s~~~P~~~~~~~ 400 (812)
.+++.+ |..++.+|||||++|+.||...+. ..+
T Consensus 25 ~~~~~~-p~~~~~~L~~~Q~~~v~~l~~~~~----------------------------------------------~~~ 57 (500)
T 1z63_A 25 SFQLLE-PYNIKANLRPYQIKGFSWMRFMNK----------------------------------------------LGF 57 (500)
T ss_dssp -CCCCC-CCSCSSCCCHHHHHHHHHHHHHHH----------------------------------------------TTC
T ss_pred CCCCCC-CHHHHCCCHHHHHHHHHHHHHHHH----------------------------------------------CCC
T ss_conf 776679-833200336999999999999741----------------------------------------------799
Q ss_pred CCEEECCCCCHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCC------------------------------
Q ss_conf 82354377870689999999822468---998663357788889964433------------------------------
Q 003540 401 GGILADAMGLGKTVMTIALLLTHSQR---GGLSGIQSASQPSDGGIEGYD------------------------------ 447 (812)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~---~~~l~v~p~s~~~~w~~e~~~------------------------------ 447 (812)
||||||+||+|||+++++++...... .+.++++|.+++.+|..|+.+
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~ 137 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYA 137 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEEHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCEEEEEHH
T ss_conf 88998089973899999999988755899978999038999999999999779955999726702100357768996379
Q ss_pred ----------------CCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCC---------------HHHHHHHHH
Q ss_conf ----------------4335884224574311167876421300159843322621---------------147865420
Q 003540 448 ----------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMT---------------LLGQWNKLI 496 (812)
Q Consensus 448 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gTlIv~p~s---------------ll~qW~~~i 496 (812)
++||+|..++..+............++++++|||+.+... ....|...+
T Consensus 138 ~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~ 217 (500)
T 1z63_A 138 VLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKF 217 (500)
T ss_dssp HHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTT
T ss_pred HHHCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 97263021178728799808410178768999999960047189974677779999999999985877579989999985
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 49965589778999999862212310344346589972248998099998039999999999999999999999984101
Q 003540 497 QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGR 576 (812)
Q Consensus 497 ~~Pfe~~~~~~l~~L~~iL~p~~LRRtK~~~~~dG~plv~LPpk~~~iv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~ 576 (812)
..|++.++......++.++.|+++||+|.+... +..||++.+.++++++++.|+.+|+.+.......+. ...
T Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~----~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~ 289 (500)
T 1z63_A 218 ATPIKKGDNMAKEELKAIISPFILRRTKYDKAI----INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVT 289 (500)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHH----HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCH----HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH----HHH
T ss_conf 251114668899999999766745502554241----122999758999818999999999999999999998----642
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 10129999999998620068963213679961035799999998526887556898999846889999999970677999
Q 003540 577 ILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGEC 656 (812)
Q Consensus 577 ~~~~~~~il~~llrLRq~c~HP~Li~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC 656 (812)
.......++..+++|||+|+||.++....
T Consensus 290 ~~~~~~~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------- 318 (500)
T 1z63_A 290 GIKRKGMILSTLLKLKQIVDHPALLKGGE--------------------------------------------------- 318 (500)
T ss_dssp THHHHHHHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHCCCC---------------------------------------------------
T ss_conf 32106799999999998817998843852---------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76100124441157752000455543104899999989886555555201799996300112234541359999999997
Q 003540 657 PICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELEN 736 (812)
Q Consensus 657 ~iC~~~~~~~~it~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLi~~L~~ 736 (812)
.....|+|+.+|.++|.+
T Consensus 319 --------------------------------------------------------------~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 319 --------------------------------------------------------------QSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp --------------------------------------------------------------CCSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CHHHCCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------------011115529999999999
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 7018986999849387999999988729-9998999289999999999997514999289988078786555
Q 003540 737 LCLSGSKSILFSQWTAFLDLLQIPLSRN-NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 737 l~~~~~KvVVFSQfts~LdlIe~~L~~~-gi~~~rlDGs~s~~~R~~vi~~F~~~~~~~VLLlSlkAGG~GL 807 (812)
+...++|+|||++|+.+++.|+..|... |+.+.+++|+++.++|++++++|+++++++|+|+|+++||+||
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gl 408 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 408 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCC
T ss_pred HHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 872688689997218899999999988538876999799999999999999608999877999533355777
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=209.13 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCC-CCEEEEEE
Q ss_conf 541359999999997701898699984938799999998872-9999899928999999999999751499-92899880
Q 003540 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR-NNIPFLRLDGTLNQQQREKVLKQFSEDN-NIMVSDSS 799 (812)
Q Consensus 722 ~~SsKi~aLi~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~-~gi~~~rlDGs~s~~~R~~vi~~F~~~~-~~~VLLlS 799 (812)
..+.|+.+|.+++.. ..+.|+|||+++...++.+...|.. .|+.+.+++|.|++++|.++++.|++++ .+.|| ++
T Consensus 486 ~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vL-va 562 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVL-LC 562 (968)
T ss_dssp TTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEE-EC
T ss_pred CCCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEE-EE
T ss_conf 856799999999983--799978999695999999999999874983899849999999999999974799763089-85
Q ss_pred CCCCCCCC
Q ss_conf 78786555
Q 003540 800 FLKDFFSL 807 (812)
Q Consensus 800 lkAGG~GL 807 (812)
+.+++.||
T Consensus 563 T~v~~~Gl 570 (968)
T 3dmq_A 563 SEIGSEGR 570 (968)
T ss_dssp SCCTTCSS
T ss_pred CCHHHCCC
T ss_conf 33431688
No 5
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=204.34 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=143.6
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 12310344346589972248998099998039999999999999999999999984101101299999999986200689
Q 003540 518 IMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDH 597 (812)
Q Consensus 518 ~~LRRtK~~~~~dG~plv~LPpk~~~iv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~llrLRq~c~H 597 (812)
--+||+|.++..+ ||||.+.+++|+|++.|+.+|+.+.......+. .+....+...++..+++|||+|||
T Consensus 12 ~~~rr~k~~v~~~------LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 12 SGLVPRGSHMASD------LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHH------CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5641648778751------999779999818999999999999999999997----403521288999999999998489
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCH
Q ss_conf 63213679961035799999998526887556898999846889999999970677999761001244411577520004
Q 003540 598 PFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCR 677 (812)
Q Consensus 598 P~Li~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~it~C~H~~C~ 677 (812)
|.++.... .
T Consensus 82 P~l~~~~~--------------------~--------------------------------------------------- 90 (271)
T 1z5z_A 82 PALLKGGE--------------------Q--------------------------------------------------- 90 (271)
T ss_dssp THHHHCSC--------------------C---------------------------------------------------
T ss_pred HHHHCCCC--------------------C---------------------------------------------------
T ss_conf 98846873--------------------2---------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
Q ss_conf 55543104899999989886555555201799996300112234541359999999997701898699984938799999
Q 003540 678 ECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLL 757 (812)
Q Consensus 678 ~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLi~~L~~l~~~~~KvVVFSQfts~LdlI 757 (812)
....|+|+.+|.++|..+...++|+||||||+.++++|
T Consensus 91 ------------------------------------------~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l 128 (271)
T 1z5z_A 91 ------------------------------------------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKII 128 (271)
T ss_dssp ------------------------------------------CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf ------------------------------------------23468999999999999986799699995519999999
Q ss_pred HHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 9988729-9998999289999999999997514999289988078786555
Q 003540 758 QIPLSRN-NIPFLRLDGTLNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 758 e~~L~~~-gi~~~rlDGs~s~~~R~~vi~~F~~~~~~~VLLlSlkAGG~GL 807 (812)
+..|... |+.+.++||++++++|++++++|++++++.|+|+|+++||.||
T Consensus 129 ~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 129 RNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 179 (271)
T ss_dssp HHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCC
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCC
T ss_conf 999987339847999799999999999998328999978997223515886
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=166.81 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHHCCC
Q ss_conf 54135999999999770--18986999849387999999988729999899928--------999999999999751499
Q 003540 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDG--------TLNQQQREKVLKQFSEDN 791 (812)
Q Consensus 722 ~~SsKi~aLi~~L~~l~--~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDG--------s~s~~~R~~vi~~F~~~~ 791 (812)
..+.|+.+|.++|.+.. ..+.|+|||+++..+++.+...|...|+.+.+++| +|+.++|++++++|++++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99869999999999984368997599997668999999999997599807996566544444589999999999986699
Q ss_pred CCEEEEEECCCCCCCCC
Q ss_conf 92899880787865555
Q 003540 792 NIMVSDSSFLKDFFSLV 808 (812)
Q Consensus 792 ~~~VLLlSlkAGG~GL~ 808 (812)
+.| |+++.++|+||=
T Consensus 420 -~~v-Lv~T~~~~~Gld 434 (494)
T 1wp9_A 420 -FNV-LVATSVGEEGLD 434 (494)
T ss_dssp -CSE-EEECGGGGGGGG
T ss_pred -CEE-EEECCCCCCCCC
T ss_conf -469-998884125887
No 7
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=1.00 E-value=1 Score=152.80 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=121.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8998099998039999999999999999999999984101101--29999999998620068963213679961035799
Q 003540 537 LPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILH--NYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLN 614 (812)
Q Consensus 537 LPpk~~~iv~v~LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~--~~~~il~~llrLRq~c~HP~Li~~~~~~~~~~dl~ 614 (812)
-|++.+.++++.||+.|+++|+.++......+..+.+...... -..++...+++||++||||+|+........
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~----- 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS----- 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC-----
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC-----
T ss_conf 898854999547888999999999996499999997067876421899999999999987389103105457766-----
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCC
Q ss_conf 99999852688755689899984688999999997067799976100124441157752000455543104899999989
Q 003540 615 KLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694 (812)
Q Consensus 615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~it~C~H~~C~~Cl~~~~~~~~~~~CP~ 694 (812)
.......++.
T Consensus 95 --------------------~~~~~~~~~l-------------------------------------------------- 104 (328)
T 3hgt_A 95 --------------------LITRDVPAHL-------------------------------------------------- 104 (328)
T ss_dssp --------------------SCSTTHHHHH--------------------------------------------------
T ss_pred --------------------CCCCCHHHHH--------------------------------------------------
T ss_conf --------------------4444304689--------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 88655555520179999630011223454135999999999770189869998493879999999887299998999289
Q 003540 695 CRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGT 774 (812)
Q Consensus 695 Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLi~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs 774 (812)
+..|+|+..|-++|..+++.++||+||||++.+||+||.+|..+|+.|.|+||+
T Consensus 105 --------------------------~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~ 158 (328)
T 3hgt_A 105 --------------------------AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGH 158 (328)
T ss_dssp --------------------------HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSC
T ss_pred --------------------------HHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf --------------------------984952999999999998589979999798169999999995289854717999
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 999999999997514999289988078786555
Q 003540 775 LNQQQREKVLKQFSEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 775 ~s~~~R~~vi~~F~~~~~~~VLLlSlkAGG~GL 807 (812)
+... +++. .+.+++|+|++ ++||.|+
T Consensus 159 ~~~~-~~k~-----~~~~~~i~Llt-sag~~gi 184 (328)
T 3hgt_A 159 SIKS-AAAA-----NDFSCTVHLFS-SEGINFT 184 (328)
T ss_dssp CC-------------CCSEEEEEEE-SSCCCTT
T ss_pred CHHH-HHHC-----CCCCCEEEEEE-CCCCCCC
T ss_conf 6354-4302-----36881699987-8877775
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=150.77 Aligned_cols=298 Identities=16% Similarity=0.097 Sum_probs=161.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 55699188999999998611189965111357843000111587711688533667532347853334568235437787
Q 003540 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGL 410 (812)
Q Consensus 331 l~~~Lr~yQkqaL~WMl~rE~~~~~~~~~~~~~plW~~y~~~d~~~~~fY~N~~sGe~s~~~P~~~~~~~GGILADEMGL 410 (812)
+..+|+|||++|+.+++.. .++||+++||+
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~--------------------------------------------------~~~ll~~~TGs 119 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD--------------------------------------------------KRGCIVLPTGS 119 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT--------------------------------------------------TEEEEECCTTS
T ss_pred CCCCCCHHHHHHHHHHHHC--------------------------------------------------CCEEEEECCCC
T ss_conf 8998688999999999965--------------------------------------------------98799969999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-C---CCCCC--CCCCCHHHHHHHHHCCEECC-CCCEE
Q ss_conf 0689999999822468998663357-7888899644334335-8---84224--57431116787642130015-98433
Q 003540 411 GKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEGYDISDQ-S---PNLMK--KEPKSLSIDKLIKQTNTLIN-GGTLI 482 (812)
Q Consensus 411 GKTIq~LaLI~~~~~~~~~l~v~p~-s~~~~w~~e~~~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~~~-~gTlI 482 (812)
|||++++.++... ....++++|. ++..+|..++..+-.. . +.... .......+.........+.. -+.+|
T Consensus 120 GKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~~~~~~~~liI 197 (472)
T 2fwr_A 120 GKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLI 197 (472)
T ss_dssp CHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEE
T ss_pred CHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCCEEE
T ss_conf 8899999999980--99999998799999999999996799636998787677677899976899977997368777899
Q ss_pred ECCCCH-----HHHHHHHH---------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 226211-----47865420---------4996558977899999986221231034434658997224899809999803
Q 003540 483 ICPMTL-----LGQWNKLI---------QKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCE 548 (812)
Q Consensus 483 v~p~sl-----l~qW~~~i---------~~Pfe~~~~~~l~~L~~iL~p~~LRRtK~~~~~dG~plv~LPpk~~~iv~v~ 548 (812)
+=-.+. .......+ ..|.. .+ .....+..++.+.+.++........ -|++.....+.++
T Consensus 198 vDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~-~~-~~~~~l~~~~~~~~~~~~~~~l~~~-----~l~~~~~~~~~~~ 270 (472)
T 2fwr_A 198 FDEVHHLPAESYVQIAQMSIAPFRLGLTATFER-ED-GRHEILKEVVGGKVFELFPDSLAGK-----HLAKYTIKRIFVP 270 (472)
T ss_dssp EETGGGTTSTTTHHHHHTCCCSEEEEEESCCCC-TT-SGGGSHHHHTCCEEEECCHHHHTSC-----CCCSEEECCEEEC
T ss_pred EECCCCCCCHHHHHHHHHCCCCEEEEEECCCCC-CC-CHHHHHHHHHCCEEEECCHHHHHCC-----CCCCEEEEEEECC
T ss_conf 989757897689999973577818999327668-89-7789999972985765478987067-----6788189999858
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999999841011012999999999862006896321367996103579999999852688755
Q 003540 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNAL 628 (812)
Q Consensus 549 LS~~Er~~Y~~i~~~~~~~~~~~~~~g~~~~~~~~il~~llrLRq~c~HP~Li~~~~~~~~~~dl~~l~~~~~~~~~~~~ 628 (812)
+++.++..|+.+....... ... ....+........+ .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~----l~~----------------------~~~~~~~~~~~~~~----------~------- 307 (472)
T 2fwr_A 271 LAEDERVEYEKREKVYKQF----LRA----------------------RGITLRRAEDFNKI----------V------- 307 (472)
T ss_dssp CCHHHHHHTTTTTHHHHSC----SSS----------------------CCCTTTCCSSSTTT----------T-------
T ss_pred CCHHHHHHHHHHHHHHHHH----HHH----------------------CCCCCCCHHHHHHH----------H-------
T ss_conf 9989999999999999999----986----------------------47542244668999----------9-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68989998468899999999706779997610012444115775200045554310489999998988655555520179
Q 003540 629 EGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (812)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~l~~~~~~eC~iC~~~~~~~~it~C~H~~C~~Cl~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (812)
.| ...++.++..+....
T Consensus 308 --------------------------~~--------------------------------~~~~~~~~~~~~~~~----- 324 (472)
T 2fwr_A 308 --------------------------MA--------------------------------SGYDERAYEALRAWE----- 324 (472)
T ss_dssp --------------------------TT--------------------------------TCCSSSSSTTTHHHH-----
T ss_pred --------------------------HH--------------------------------HCCCHHHHHHHHHHH-----
T ss_conf --------------------------87--------------------------------236988999999999-----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99963001122345413599999999977018986999849387999999988729999899928999999999999751
Q 003540 709 TGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSRNNIPFLRLDGTLNQQQREKVLKQFS 788 (812)
Q Consensus 709 ~~~~~~~~~~~~~~~SsKi~aLi~~L~~l~~~~~KvVVFSQfts~LdlIe~~L~~~gi~~~rlDGs~s~~~R~~vi~~F~ 788 (812)
.........+.|+..|.++|.. ..+.|+|||+++...++.+...|. ...++|.++.++|++++++|+
T Consensus 325 ------~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~ 391 (472)
T 2fwr_A 325 ------EARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFR 391 (472)
T ss_dssp ------HHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHH
T ss_pred ------HHHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHH
T ss_conf ------9999763373899999999985--789838999797999999999748-----655628999999999999986
Q ss_pred CCCCCEEEEEECCCCCCCCC
Q ss_conf 49992899880787865555
Q 003540 789 EDNNIMVSDSSFLKDFFSLV 808 (812)
Q Consensus 789 ~~~~~~VLLlSlkAGG~GL~ 808 (812)
++. +.| |+++.+++.|+=
T Consensus 392 ~g~-~~v-Lv~T~~~~~Gld 409 (472)
T 2fwr_A 392 TGR-FRA-IVSSQVLDEGID 409 (472)
T ss_dssp HSS-CSB-CBCSSCCCSSSC
T ss_pred CCC-CCE-EEECCCHHCCCC
T ss_conf 799-888-998570514846
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=146.29 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 54135999999999770--18986999849387999999988729------------99989992899999999999975
Q 003540 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLSRN------------NIPFLRLDGTLNQQQREKVLKQF 787 (812)
Q Consensus 722 ~~SsKi~aLi~~L~~l~--~~~~KvVVFSQfts~LdlIe~~L~~~------------gi~~~rlDGs~s~~~R~~vi~~F 787 (812)
..++|+..|+++|.+.. ..+.|+|||++++.+++.|...|... |..+..++|+|++.+|.+++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78979999999999985358997499996979999999999863735366661699657876567888999999999986
Q ss_pred HCCCCCEEEEEECCCCCCCC
Q ss_conf 14999289988078786555
Q 003540 788 SEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 788 ~~~~~~~VLLlSlkAGG~GL 807 (812)
+++..+.| |+++.++|.||
T Consensus 690 r~~g~~~V-LVaT~~~~eGI 708 (936)
T 4a2w_A 690 KTSKDNRL-LIATSVADEGI 708 (936)
T ss_dssp ----CCSE-EEEECC-----
T ss_pred HCCCCEEE-EEEECCHHCCC
T ss_conf 31598159-99807264277
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=137.10 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 54135999999999770--18986999849387999999988729------------99989992899999999999975
Q 003540 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLSRN------------NIPFLRLDGTLNQQQREKVLKQF 787 (812)
Q Consensus 722 ~~SsKi~aLi~~L~~l~--~~~~KvVVFSQfts~LdlIe~~L~~~------------gi~~~rlDGs~s~~~R~~vi~~F 787 (812)
..++|+..|+++|.+.. ..+.|+|||++++.+++.|...|... |..+..++|+|++++|.+++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 89959999999999985058997089997958999999999974756466552189844775457898999999999985
Q ss_pred HCCCCCEEEEEECCCCCCCC
Q ss_conf 14999289988078786555
Q 003540 788 SEDNNIMVSDSSFLKDFFSL 807 (812)
Q Consensus 788 ~~~~~~~VLLlSlkAGG~GL 807 (812)
+++..+.|| +++.++|.||
T Consensus 690 ~~~g~~~vL-VaT~~~~~GI 708 (797)
T 4a2q_A 690 KTSKDNRLL-IATSVADEGI 708 (797)
T ss_dssp ----CCSEE-EEECC-----
T ss_pred HCCCCCEEE-EECCCHHCCC
T ss_conf 136970499-9748054479
Done!