Query 003541
Match_columns 811
No_of_seqs 344 out of 1049
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 1E-251 3E-256 2159.3 55.8 798 1-804 1-800 (1079)
2 PLN02400 cellulose synthase 100.0 6E-251 1E-255 2155.1 53.0 776 5-805 24-806 (1085)
3 PLN02436 cellulose synthase A 100.0 2E-247 5E-252 2118.7 55.1 782 5-805 24-817 (1094)
4 PLN02915 cellulose synthase A 100.0 9E-236 2E-240 2022.6 50.4 727 13-805 11-765 (1044)
5 PLN02189 cellulose synthase 100.0 9E-230 2E-234 1972.0 50.6 733 6-805 23-762 (1040)
6 PLN02195 cellulose synthase A 100.0 6E-219 1E-223 1873.8 49.2 695 13-805 2-697 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-188 6E-193 1628.6 45.5 665 9-805 116-860 (1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-154 3E-159 1313.2 30.4 447 351-805 1-447 (720)
9 PLN02190 cellulose synthase-li 100.0 7E-151 1E-155 1285.6 36.0 475 252-806 6-484 (756)
10 PLN02893 Cellulose synthase-li 100.0 2E-141 5E-146 1210.9 36.8 455 252-805 9-470 (734)
11 PF14569 zf-UDP: Zinc-binding 100.0 1.4E-43 3E-48 307.2 4.4 80 9-89 1-80 (80)
12 TIGR03030 CelA cellulose synth 100.0 4.1E-35 8.8E-40 340.1 22.3 251 272-639 57-320 (713)
13 PRK11498 bcsA cellulose syntha 100.0 4.5E-34 9.7E-39 335.6 21.5 231 274-639 189-431 (852)
14 cd04191 Glucan_BSP_ModH Glucan 99.9 6.6E-22 1.4E-26 204.8 16.5 113 516-639 67-184 (254)
15 PRK05454 glucosyltransferase M 99.9 1.5E-20 3.2E-25 218.7 23.0 250 270-639 40-309 (691)
16 COG1215 Glycosyltransferases, 99.8 7.8E-18 1.7E-22 180.5 16.4 170 348-639 53-227 (439)
17 cd06421 CESA_CelA_like CESA_Ce 99.7 5.7E-16 1.2E-20 151.0 14.4 169 349-640 1-174 (234)
18 PRK14583 hmsR N-glycosyltransf 99.6 3.9E-15 8.5E-20 164.3 18.0 167 347-639 73-243 (444)
19 cd06437 CESA_CaSu_A2 Cellulose 99.6 2.1E-14 4.5E-19 142.2 16.6 171 349-639 1-175 (232)
20 TIGR03111 glyc2_xrt_Gpos1 puta 99.5 1.5E-13 3.4E-18 151.9 18.7 124 345-592 45-169 (439)
21 PRK11204 N-glycosyltransferase 99.5 1.5E-13 3.3E-18 149.0 17.2 166 346-639 51-222 (420)
22 cd06427 CESA_like_2 CESA_like_ 99.5 1.5E-13 3.3E-18 137.7 15.2 170 349-639 1-174 (241)
23 cd06436 GlcNAc-1-P_transferase 99.5 2.4E-13 5.2E-18 132.5 13.6 115 518-639 52-176 (191)
24 cd06435 CESA_NdvC_like NdvC_li 99.5 7E-13 1.5E-17 130.8 16.2 111 518-640 58-172 (236)
25 PF13641 Glyco_tranf_2_3: Glyc 99.5 2.4E-14 5.2E-19 140.1 4.1 172 349-643 1-179 (228)
26 PRK14716 bacteriophage N4 adso 99.5 1.6E-12 3.6E-17 147.4 17.9 171 347-639 64-245 (504)
27 TIGR03472 HpnI hopanoid biosyn 99.4 1E-11 2.2E-16 134.4 17.1 168 347-639 39-213 (373)
28 cd06438 EpsO_like EpsO protein 99.4 6.3E-12 1.4E-16 120.9 13.0 103 531-639 61-168 (183)
29 PRK11234 nfrB bacteriophage N4 99.4 7.7E-12 1.7E-16 147.3 15.3 97 532-635 132-239 (727)
30 cd04192 GT_2_like_e Subfamily 99.3 2.6E-11 5.7E-16 117.4 12.6 165 353-638 1-167 (229)
31 cd06439 CESA_like_1 CESA_like_ 99.3 1.2E-10 2.6E-15 116.1 16.0 127 345-597 25-151 (251)
32 cd02520 Glucosylceramide_synth 99.2 6.9E-11 1.5E-15 115.1 12.8 137 349-639 1-137 (196)
33 cd06434 GT2_HAS Hyaluronan syn 99.2 1.5E-10 3.1E-15 113.8 13.5 98 532-639 63-165 (235)
34 cd04190 Chitin_synth_C C-termi 99.1 1.9E-10 4E-15 117.0 9.3 89 548-641 71-164 (244)
35 PRK15489 nfrB bacteriophage N4 99.1 1.4E-09 3E-14 127.9 17.1 101 532-639 140-250 (703)
36 TIGR03469 HonB hopene-associat 99.1 2.3E-09 5E-14 116.9 17.3 136 345-594 36-172 (384)
37 cd04196 GT_2_like_d Subfamily 99.0 2.6E-09 5.7E-14 102.5 11.6 100 532-641 65-167 (214)
38 cd04184 GT2_RfbC_Mx_like Myxoc 99.0 4.7E-09 1E-13 100.7 13.3 161 349-639 1-162 (202)
39 cd04195 GT2_AmsE_like GT2_AmsE 99.0 9.7E-09 2.1E-13 98.7 14.1 102 518-639 57-163 (201)
40 PF14570 zf-RING_4: RING/Ubox 99.0 2.9E-10 6.2E-15 92.4 2.8 48 20-70 1-48 (48)
41 PF00535 Glycos_transf_2: Glyc 99.0 6.4E-10 1.4E-14 100.6 5.5 110 518-639 55-166 (169)
42 cd06423 CESA_like CESA_like is 99.0 9.5E-09 2.1E-13 92.4 12.8 108 518-639 55-167 (180)
43 cd02525 Succinoglycan_BP_ExoA 98.9 2.4E-08 5.1E-13 98.2 13.0 117 351-592 2-118 (249)
44 PLN02726 dolichyl-phosphate be 98.8 1.2E-07 2.6E-12 95.8 16.0 109 518-641 70-181 (243)
45 cd06433 GT_2_WfgS_like WfgS an 98.7 9.2E-08 2E-12 90.1 12.0 94 533-640 62-156 (202)
46 cd06420 GT2_Chondriotin_Pol_N 98.7 1.5E-07 3.2E-12 88.9 13.0 78 533-643 66-146 (182)
47 cd06442 DPM1_like DPM1_like re 98.7 2E-07 4.3E-12 90.9 13.8 106 518-641 55-166 (224)
48 cd04179 DPM_DPG-synthase_like 98.7 1.3E-07 2.9E-12 89.3 11.6 109 518-641 56-166 (185)
49 cd02522 GT_2_like_a GT_2_like_ 98.6 4.9E-07 1.1E-11 88.0 13.4 91 533-639 59-149 (221)
50 cd04186 GT_2_like_c Subfamily 98.6 4.1E-07 9E-12 83.3 11.3 67 532-640 60-126 (166)
51 cd04187 DPM1_like_bac Bacteria 98.5 1.2E-06 2.6E-11 83.6 13.0 105 518-640 57-161 (181)
52 cd02510 pp-GalNAc-T pp-GalNAc- 98.5 9.5E-07 2.1E-11 92.2 12.7 109 353-578 2-110 (299)
53 cd04185 GT_2_like_b Subfamily 98.5 1.5E-06 3.3E-11 84.1 12.5 72 533-639 63-134 (202)
54 cd04188 DPG_synthase DPG_synth 98.4 2.2E-06 4.8E-11 84.1 12.4 53 533-594 69-121 (211)
55 PTZ00260 dolichyl-phosphate be 98.4 1.2E-05 2.6E-10 87.1 17.9 41 533-578 149-189 (333)
56 cd06913 beta3GnTL1_like Beta 1 98.4 4E-06 8.7E-11 82.7 12.8 42 353-399 1-42 (219)
57 cd02526 GT2_RfbF_like RfbF is 98.3 3.1E-06 6.6E-11 83.6 10.0 110 518-639 49-164 (237)
58 PRK10073 putative glycosyl tra 98.3 5.4E-06 1.2E-10 89.4 12.5 45 347-397 4-48 (328)
59 PRK13915 putative glucosyl-3-p 98.3 1.1E-05 2.4E-10 86.6 14.1 50 533-590 102-152 (306)
60 PRK10018 putative glycosyl tra 98.3 1.2E-05 2.5E-10 85.5 13.5 110 347-578 3-112 (279)
61 cd00761 Glyco_tranf_GTA_type G 98.1 4.6E-05 9.9E-10 67.0 11.7 52 531-591 62-114 (156)
62 COG2943 MdoH Membrane glycosyl 97.9 0.00061 1.3E-08 78.4 19.1 113 518-643 214-336 (736)
63 PRK10063 putative glycosyl tra 97.7 0.00028 6E-09 73.3 11.7 48 349-400 1-49 (248)
64 TIGR01556 rhamnosyltran L-rham 97.7 0.00038 8.3E-09 71.9 12.1 111 518-639 47-161 (281)
65 PF13632 Glyco_trans_2_3: Glyc 97.7 4.9E-05 1.1E-09 73.7 4.7 80 553-639 1-85 (193)
66 PF10111 Glyco_tranf_2_2: Glyc 97.5 0.0013 2.7E-08 69.4 13.1 107 532-644 74-189 (281)
67 PF13506 Glyco_transf_21: Glyc 97.5 0.00023 4.9E-09 70.8 7.1 98 530-640 14-115 (175)
68 PRK10714 undecaprenyl phosphat 97.5 0.001 2.2E-08 72.1 12.0 40 533-577 77-116 (325)
69 COG0463 WcaA Glycosyltransfera 97.4 0.0017 3.8E-08 57.1 10.3 45 348-398 2-46 (291)
70 cd02511 Beta4Glucosyltransfera 97.1 0.0038 8.3E-08 63.1 11.1 42 533-579 58-99 (229)
71 cd02514 GT13_GLCNAC-TI GT13_GL 96.3 0.05 1.1E-06 60.3 13.2 89 531-643 83-176 (334)
72 COG1216 Predicted glycosyltran 96.2 0.051 1.1E-06 57.9 12.4 123 348-596 2-126 (305)
73 COG5175 MOT2 Transcriptional r 95.8 0.004 8.6E-08 68.5 1.6 48 19-69 16-63 (480)
74 TIGR00570 cdk7 CDK-activating 95.3 0.018 3.9E-07 63.2 4.6 55 16-72 2-56 (309)
75 PF14446 Prok-RING_1: Prokaryo 94.2 0.035 7.6E-07 46.9 2.5 46 16-69 4-51 (54)
76 PF03142 Chitin_synth_2: Chiti 89.6 5.8 0.00013 47.0 14.1 44 347-393 23-66 (527)
77 cd00162 RING RING-finger (Real 89.2 0.4 8.6E-06 35.7 2.9 44 19-68 1-44 (45)
78 KOG2978 Dolichol-phosphate man 88.8 2.1 4.5E-05 45.1 8.6 53 516-578 63-115 (238)
79 PF05290 Baculo_IE-1: Baculovi 87.2 0.37 8.1E-06 47.5 2.1 51 18-72 81-134 (140)
80 smart00504 Ubox Modified RING 79.2 2.1 4.6E-05 35.2 3.2 44 19-70 3-46 (63)
81 PRK14559 putative protein seri 77.5 1.3 2.7E-05 53.5 1.9 32 39-71 18-53 (645)
82 KOG2977 Glycosyltransferase [G 77.1 40 0.00087 37.7 12.8 60 350-420 68-130 (323)
83 PF03966 Trm112p: Trm112p-like 73.3 0.88 1.9E-05 39.3 -0.6 26 48-73 42-67 (68)
84 PHA02929 N1R/p28-like protein; 72.2 4.5 9.8E-05 43.4 4.2 55 15-70 172-227 (238)
85 KOG3737 Predicted polypeptide 71.6 13 0.00029 42.9 7.8 46 345-393 151-196 (603)
86 PLN03208 E3 ubiquitin-protein 70.8 5.9 0.00013 41.5 4.5 63 1-70 1-79 (193)
87 smart00659 RPOLCX RNA polymera 70.6 2.7 5.9E-05 34.1 1.7 27 18-46 3-29 (44)
88 PF13639 zf-RING_2: Ring finge 70.6 3.1 6.6E-05 32.6 1.9 43 19-66 2-44 (44)
89 PHA02862 5L protein; Provision 70.5 3.1 6.7E-05 41.9 2.4 49 17-71 2-54 (156)
90 KOG3800 Predicted E3 ubiquitin 69.8 3.6 7.8E-05 45.3 2.9 53 18-72 1-53 (300)
91 PF14447 Prok-RING_4: Prokaryo 69.7 2.2 4.7E-05 36.5 1.0 47 16-72 6-52 (55)
92 PF03604 DNA_RNApol_7kD: DNA d 67.6 4 8.8E-05 31.3 1.9 26 19-46 2-27 (32)
93 PF02318 FYVE_2: FYVE-type zin 67.3 1.3 2.7E-05 42.2 -1.0 48 15-65 52-100 (118)
94 KOG0823 Predicted E3 ubiquitin 65.8 4.1 9E-05 43.5 2.3 46 17-70 47-95 (230)
95 smart00184 RING Ring finger. E 63.8 6.6 0.00014 27.9 2.4 39 20-65 1-39 (39)
96 PHA02825 LAP/PHD finger-like p 62.1 6.4 0.00014 40.2 2.7 51 16-72 7-61 (162)
97 PF13712 Glyco_tranf_2_5: Glyc 60.8 28 0.00061 36.3 7.3 45 532-580 40-85 (217)
98 smart00249 PHD PHD zinc finger 60.6 6.7 0.00014 29.6 2.1 43 19-65 1-47 (47)
99 KOG0006 E3 ubiquitin-protein l 60.2 7.2 0.00016 43.6 3.0 63 12-75 310-413 (446)
100 KOG2932 E3 ubiquitin ligase in 59.6 6.2 0.00013 44.0 2.3 44 29-72 83-136 (389)
101 PRK00420 hypothetical protein; 58.6 4.5 9.9E-05 39.0 1.0 29 37-71 24-52 (112)
102 KOG2068 MOT2 transcription fac 57.5 8.4 0.00018 43.2 2.9 52 17-72 249-300 (327)
103 KOG2547 Ceramide glucosyltrans 54.3 4.2E+02 0.0091 31.1 15.7 99 530-639 154-257 (431)
104 PF14471 DUF4428: Domain of un 53.9 7.2 0.00016 32.6 1.3 28 19-52 1-28 (51)
105 PF00097 zf-C3HC4: Zinc finger 53.9 9.7 0.00021 29.0 2.0 40 20-65 1-41 (41)
106 smart00291 ZnF_ZZ Zinc-binding 53.8 13 0.00028 29.7 2.7 38 16-58 3-41 (44)
107 PRK00398 rpoP DNA-directed RNA 52.2 9.5 0.00021 30.6 1.7 27 19-46 5-31 (46)
108 PF13923 zf-C3HC4_2: Zinc fing 51.4 14 0.00031 28.3 2.5 39 20-65 1-39 (39)
109 PF13920 zf-C3HC4_3: Zinc fing 51.1 16 0.00034 29.4 2.8 46 18-71 3-49 (50)
110 PF07282 OrfB_Zn_ribbon: Putat 50.0 12 0.00026 31.9 2.1 33 16-49 27-59 (69)
111 cd02249 ZZ Zinc finger, ZZ typ 48.9 14 0.00031 29.6 2.3 31 19-54 2-33 (46)
112 PRK15103 paraquat-inducible me 47.9 15 0.00031 42.4 3.0 30 34-72 219-248 (419)
113 PRK04023 DNA polymerase II lar 47.5 13 0.00028 47.1 2.6 45 15-70 624-674 (1121)
114 cd02335 ZZ_ADA2 Zinc finger, Z 46.6 17 0.00037 29.8 2.4 31 19-53 2-33 (49)
115 TIGR00155 pqiA_fam integral me 46.3 13 0.00027 42.7 2.2 30 35-72 214-243 (403)
116 PF07649 C1_3: C1-like domain; 46.2 12 0.00027 27.5 1.4 28 19-50 2-29 (30)
117 PF13704 Glyco_tranf_2_4: Glyc 46.0 97 0.0021 27.3 7.3 29 366-398 5-33 (97)
118 COG0551 TopA Zn-finger domain 45.2 16 0.00035 35.4 2.4 50 14-67 14-68 (140)
119 KOG3736 Polypeptide N-acetylga 44.7 30 0.00065 41.7 5.0 49 345-396 138-186 (578)
120 COG5114 Histone acetyltransfer 44.3 7.8 0.00017 43.4 0.2 36 19-58 7-43 (432)
121 KOG0457 Histone acetyltransfer 44.2 9.6 0.00021 44.1 0.8 49 18-73 15-64 (438)
122 PRK07220 DNA topoisomerase I; 44.1 13 0.00029 45.5 2.1 48 18-67 590-643 (740)
123 PF13896 Glyco_transf_49: Glyc 42.9 27 0.00058 38.6 4.0 40 549-589 126-165 (317)
124 PHA02926 zinc finger-like prot 40.3 31 0.00067 37.3 3.7 62 14-75 167-235 (242)
125 TIGR02443 conserved hypothetic 39.5 20 0.00044 31.3 1.9 31 15-45 7-40 (59)
126 PF09484 Cas_TM1802: CRISPR-as 36.6 19 0.0004 42.9 1.7 41 14-54 195-251 (593)
127 PRK14890 putative Zn-ribbon RN 36.5 46 0.001 29.1 3.6 50 16-67 6-56 (59)
128 PF11077 DUF2616: Protein of u 36.2 12 0.00026 38.6 0.0 26 20-49 55-81 (173)
129 PF00628 PHD: PHD-finger; Int 36.2 29 0.00063 27.7 2.2 45 19-67 1-50 (51)
130 cd00350 rubredoxin_like Rubred 36.1 15 0.00032 27.8 0.5 19 52-70 10-28 (33)
131 PF14634 zf-RING_5: zinc-RING 35.3 41 0.00088 26.6 2.9 43 20-67 2-44 (44)
132 KOG3738 Predicted polypeptide 34.9 51 0.0011 38.5 4.6 49 346-397 121-169 (559)
133 PRK12380 hydrogenase nickel in 34.7 13 0.00028 35.5 -0.0 27 36-69 70-96 (113)
134 PRK07219 DNA topoisomerase I; 34.2 25 0.00054 43.7 2.2 53 17-72 688-746 (822)
135 PRK14973 DNA topoisomerase I; 33.2 31 0.00066 43.8 2.8 49 17-68 588-644 (936)
136 PF06906 DUF1272: Protein of u 32.3 50 0.0011 28.7 3.0 48 18-71 6-53 (57)
137 PF08274 PhnA_Zn_Ribbon: PhnA 32.1 19 0.00041 27.4 0.5 25 18-44 3-27 (30)
138 PRK11595 DNA utilization prote 31.6 32 0.0007 36.0 2.3 39 17-68 5-43 (227)
139 COG1215 Glycosyltransferases, 31.2 13 0.00028 40.9 -0.8 30 770-803 231-260 (439)
140 PRK11827 hypothetical protein; 31.0 34 0.00074 29.9 1.9 34 45-78 12-45 (60)
141 PRK14503 mannosyl-3-phosphogly 30.9 1E+02 0.0022 35.6 6.0 40 532-574 143-182 (393)
142 COG4739 Uncharacterized protei 30.8 25 0.00055 35.8 1.3 45 26-70 77-121 (182)
143 KOG2068 MOT2 transcription fac 30.8 21 0.00046 40.1 0.8 30 43-72 1-32 (327)
144 PRK12495 hypothetical protein; 30.7 23 0.0005 38.0 1.0 30 35-71 41-70 (226)
145 COG1996 RPC10 DNA-directed RNA 30.7 25 0.00054 29.6 1.0 29 17-46 6-34 (49)
146 PRK03982 heat shock protein Ht 30.6 2.3E+02 0.0049 30.9 8.5 18 314-331 50-67 (288)
147 PF11781 RRN7: RNA polymerase 30.0 29 0.00063 27.2 1.2 27 16-44 5-33 (36)
148 PF11238 DUF3039: Protein of u 29.7 17 0.00036 31.6 -0.1 13 59-71 44-56 (58)
149 TIGR00599 rad18 DNA repair pro 29.6 39 0.00084 39.0 2.6 51 12-70 20-71 (397)
150 PF07754 DUF1610: Domain of un 29.5 44 0.00094 24.5 1.9 24 20-44 1-24 (24)
151 cd00730 rubredoxin Rubredoxin; 28.9 19 0.00042 30.1 0.1 8 61-68 36-43 (50)
152 cd02336 ZZ_RSC8 Zinc finger, Z 28.7 47 0.001 27.3 2.3 33 19-56 2-35 (45)
153 PTZ00293 thymidine kinase; Pro 28.2 28 0.0006 36.9 1.1 35 18-52 138-177 (211)
154 PRK08359 transcription factor; 28.0 21 0.00046 36.9 0.2 30 18-55 7-42 (176)
155 PRK14873 primosome assembly pr 28.0 41 0.0009 41.1 2.7 10 59-68 422-431 (665)
156 PF02411 MerT: MerT mercuric t 27.9 2E+02 0.0043 28.0 6.7 53 268-320 47-115 (116)
157 PF13240 zinc_ribbon_2: zinc-r 27.7 19 0.0004 25.7 -0.2 14 55-68 9-22 (23)
158 COG2888 Predicted Zn-ribbon RN 27.5 57 0.0012 28.7 2.6 48 17-66 9-57 (61)
159 PF12773 DZR: Double zinc ribb 27.4 44 0.00095 26.8 1.9 12 17-28 12-23 (50)
160 PF13248 zf-ribbon_3: zinc-rib 27.0 20 0.00042 25.9 -0.2 15 54-68 11-25 (26)
161 PF09526 DUF2387: Probable met 26.9 42 0.00092 30.0 1.9 31 15-45 6-39 (71)
162 PRK13751 putative mercuric tra 26.2 2E+02 0.0043 28.3 6.4 52 267-318 46-113 (116)
163 TIGR03030 CelA cellulose synth 26.2 21 0.00045 43.5 -0.3 24 777-801 328-351 (713)
164 PF03107 C1_2: C1 domain; Int 26.0 46 0.001 24.7 1.6 28 19-50 2-29 (30)
165 cd00065 FYVE FYVE domain; Zinc 25.9 36 0.00079 27.7 1.2 37 17-56 2-38 (57)
166 TIGR01206 lysW lysine biosynth 25.9 48 0.001 28.3 1.9 24 18-42 3-28 (54)
167 PF13632 Glyco_trans_2_3: Glyc 25.9 18 0.00039 35.2 -0.7 28 770-800 89-116 (193)
168 PF00643 zf-B_box: B-box zinc 25.8 50 0.0011 25.4 1.9 31 17-54 3-33 (42)
169 KOG0311 Predicted E3 ubiquitin 25.7 18 0.00039 41.1 -0.8 45 19-69 45-89 (381)
170 KOG2177 Predicted E3 ubiquitin 25.6 35 0.00076 34.0 1.3 44 16-67 12-55 (386)
171 COG0551 TopA Zn-finger domain 25.5 32 0.0007 33.3 1.0 52 15-70 58-112 (140)
172 PRK06319 DNA topoisomerase I/S 25.4 46 0.001 41.7 2.5 57 15-74 590-660 (860)
173 KOG2824 Glutaredoxin-related p 25.2 45 0.00098 36.9 2.1 22 14-43 226-247 (281)
174 TIGR02460 osmo_MPGsynth mannos 25.0 1.4E+02 0.0031 34.3 5.9 40 532-574 142-181 (381)
175 PF01580 FtsK_SpoIIIE: FtsK/Sp 24.8 3.9E+02 0.0085 26.8 8.5 74 365-468 51-124 (205)
176 TIGR00595 priA primosomal prot 24.7 38 0.00082 39.8 1.5 51 29-79 205-260 (505)
177 PRK00564 hypA hydrogenase nick 24.5 27 0.0006 33.5 0.3 28 37-71 72-100 (117)
178 TIGR00155 pqiA_fam integral me 24.4 56 0.0012 37.5 2.8 34 35-72 12-46 (403)
179 TIGR02556 cas_TM1802 CRISPR-as 24.0 47 0.001 39.8 2.1 41 17-58 170-222 (555)
180 PRK03681 hypA hydrogenase nick 23.8 26 0.00056 33.5 -0.0 27 37-70 71-98 (114)
181 PRK03824 hypA hydrogenase nick 23.8 28 0.0006 34.2 0.1 12 57-68 105-116 (135)
182 COG4391 Uncharacterized protei 23.4 33 0.00071 30.3 0.5 17 55-71 44-60 (62)
183 PRK09382 ispDF bifunctional 2- 23.3 1.7E+02 0.0037 33.4 6.2 56 536-595 85-159 (378)
184 cd03031 GRX_GRX_like Glutaredo 23.2 45 0.00097 33.4 1.5 43 16-67 98-141 (147)
185 TIGR02302 aProt_lowcomp conser 22.8 1.8E+02 0.0038 37.0 6.7 39 297-336 44-82 (851)
186 smart00744 RINGv The RING-vari 22.7 1E+02 0.0022 25.4 3.2 45 19-66 1-49 (49)
187 PRK14714 DNA polymerase II lar 22.6 47 0.001 43.3 1.8 47 18-71 668-721 (1337)
188 KOG1941 Acetylcholine receptor 22.4 28 0.0006 40.2 -0.1 64 16-81 364-432 (518)
189 PF04641 Rtf2: Rtf2 RING-finge 22.1 76 0.0016 34.2 3.0 49 16-70 112-161 (260)
190 KOG3507 DNA-directed RNA polym 21.9 54 0.0012 28.8 1.5 30 15-46 18-47 (62)
191 PF01155 HypA: Hydrogenase exp 21.9 23 0.00049 33.7 -0.8 30 36-72 70-99 (113)
192 TIGR00100 hypA hydrogenase nic 21.8 35 0.00076 32.6 0.4 28 37-71 71-98 (115)
193 KOG2857 Predicted MYND Zn-fing 21.7 48 0.001 33.6 1.3 45 17-73 5-50 (157)
194 KOG2571 Chitin synthase/hyalur 21.5 2.1E+02 0.0045 36.4 6.8 89 546-640 436-528 (862)
195 PF03071 GNT-I: GNT-I family; 20.8 1E+02 0.0023 36.1 4.0 46 347-397 91-137 (434)
196 PF14319 Zn_Tnp_IS91: Transpos 20.6 68 0.0015 30.6 2.1 34 31-71 37-72 (111)
197 cd04191 Glucan_BSP_ModH Glucan 20.5 31 0.00067 36.7 -0.3 42 351-396 1-46 (254)
198 PRK15103 paraquat-inducible me 20.3 50 0.0011 38.2 1.3 32 37-72 11-43 (419)
199 PF14446 Prok-RING_1: Prokaryo 20.2 34 0.00074 29.4 -0.0 17 56-72 18-34 (54)
200 PRK10220 hypothetical protein; 20.1 77 0.0017 30.9 2.3 25 45-70 7-31 (111)
201 PF13719 zinc_ribbon_5: zinc-r 20.1 44 0.00095 26.0 0.6 11 61-71 4-14 (37)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.4e-251 Score=2159.30 Aligned_cols=798 Identities=87% Similarity=1.387 Sum_probs=722.6
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccC
Q 003541 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (811)
Q Consensus 1 ~~~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~g 80 (811)
||+.|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 003541 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (811)
Q Consensus 81 d~~~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (811)
|||||+|+||+||||+|..+++...++++|+|++|+|+||++.|.+++.++++.+++++|+|++||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999999654555567889999999999999998888788877556788999999988999997766665
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCC-CCCCC
Q 003541 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (811)
Q Consensus 161 ~~~~~~~~~~~~vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (811)
.++++.+ .||||||+|+.+.+.++|.|||+||+++||||||+||||||+||+||+|++.++.+.....+++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 5555543 689999999777778999999999999999999999999999999999887777665544565543 33221
Q ss_pred CCCccCCcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhh
Q 003541 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (811)
Q Consensus 240 ~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q 319 (811)
.+.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 12235788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003541 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (811)
Q Consensus 320 ~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf 399 (811)
++||+||+|.||++||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||+++|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999987778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 003541 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (811)
Q Consensus 400 ~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~ 479 (811)
|||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|+++++++|++||.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecC
Q 003541 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (811)
Q Consensus 480 m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDc 559 (811)
|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 560 Dhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
|||+|||++||+||||||||+.|+++|||||||+|+|++++|||+|+++|||+++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcCCC-CCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHH
Q 003541 640 GYEPPLKPKHRKPGLLSSLFGGSRKKNS-KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (811)
Q Consensus 640 G~~Pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 718 (811)
|++||...++....+++ |||++.+++. +.+.+...++...++.+.+.+++++++++++.++..++++++.+++++.++
T Consensus 640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99999765432222222 4555533322 111111111122234455667888888887766655667888889999999
Q ss_pred hhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeee
Q 003541 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQ 798 (811)
Q Consensus 719 k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~ 798 (811)
++||+|++||+|+++++++.++..+++++|+||++|+||+||++|+||+|||| |||||||| +.|||+||.+|||++
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw---~YGSvTED-v~TG~rLH~rGWrSv 794 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGW---IYGSVTED-ILTGFKMHARGWRSI 794 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCe---eecceecH-HHHHHHHHcCCCcEE
Confidence 99999999999999999999888899999999999999999999999999999 78899987 999999999999999
Q ss_pred eccchh
Q 003541 799 DACPWL 804 (811)
Q Consensus 799 ~~~~~~ 804 (811)
||.|-+
T Consensus 795 Y~~P~r 800 (1079)
T PLN02638 795 YCMPKR 800 (1079)
T ss_pred ecCCCc
Confidence 999865
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=5.6e-251 Score=2155.13 Aligned_cols=776 Identities=67% Similarity=1.154 Sum_probs=699.6
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCC
Q 003541 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (811)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~ 84 (811)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD-ee 102 (1085)
T PLN02400 24 SDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD-ED 102 (1085)
T ss_pred ccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-cc
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCC-CCCCCccccCCCCCcccCCccccCCCCCCCccccccC
Q 003541 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMA 163 (811)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (811)
|||+||+||||+|..+++.+.+++ . |++.+.+ +++|+. +++|+|++||.++||+++++++|++++
T Consensus 103 edd~DDlenEf~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~~~ 168 (1085)
T PLN02400 103 EDDVDDLENEFNYAQGNGKARHQW---------Q-GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQSVR 168 (1085)
T ss_pred cccchhhhhhhccccccccccccc---------c-ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccccc
Confidence 889999999999965333322221 1 5555544 445552 478999999989999998887776666
Q ss_pred CCCC---CCCCcc---ccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCC
Q 003541 164 SPGV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (811)
Q Consensus 164 ~~~~---~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (811)
++.. +.|+|| ||+|+ ..+++++.|||+||+++||||||+||||||+||+||+|++.++.+.. ++++|++++
T Consensus 169 ~~~~~~~~~~~~vh~~p~~d~-~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~~~ 245 (1085)
T PLN02400 169 TTSGPLGPAERNANSSPYIDP-RQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGDME 245 (1085)
T ss_pred CCcccccccCCcccccCccCc-ccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccCCC
Confidence 6532 456888 59994 33477899999999999999999999999999999998777666643 345445544
Q ss_pred CCCCCccCCcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Q 003541 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (811)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL 317 (811)
| .+++++|++++++.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|
T Consensus 246 ~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll 324 (1085)
T PLN02400 246 G-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLL 324 (1085)
T ss_pred C-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003541 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (811)
Q Consensus 318 ~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~l 397 (811)
+|++||+||+|.||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||+++|
T Consensus 325 ~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 404 (1085)
T PLN02400 325 DQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML 404 (1085)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 003541 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (811)
Q Consensus 398 Tf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~g 477 (811)
|||||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++|
T Consensus 405 Tf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~ 484 (1085)
T PLN02400 405 TFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEG 484 (1085)
T ss_pred HHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEe
Q 003541 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (811)
Q Consensus 478 w~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnl 557 (811)
|.|+|||+|||++++|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+||||||+||||||||||
T Consensus 485 ~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNl 564 (1085)
T PLN02400 485 WTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNV 564 (1085)
T ss_pred cccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhh
Q 003541 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (811)
Q Consensus 558 DcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~A 637 (811)
|||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++++|+||+|||+|+||||+|||+|
T Consensus 565 DCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~a 644 (1085)
T PLN02400 565 DCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQA 644 (1085)
T ss_pred ccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcccccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHH
Q 003541 638 LYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSL 717 (811)
Q Consensus 638 LyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 717 (811)
|||++||..++.....+.|+|||++++++++.+....+.++..+..+++.+++++++++++.++ +++|++.++++++|
T Consensus 645 LYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 722 (1085)
T PLN02400 645 LYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQKSL 722 (1085)
T ss_pred eccCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhh
Confidence 9999999765432222222345566665433322222333334556678899999999999887 77788888999999
Q ss_pred HhhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceee
Q 003541 718 EKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRI 797 (811)
Q Consensus 718 ~k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~ 797 (811)
+++||+|++||+|+++++++++++++++++|+||+|||||+||++|+||+|||| |||||||| +.|||+||.+|||+
T Consensus 723 ~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGw---iYGSvTED-~~TG~~LH~rGWrS 798 (1085)
T PLN02400 723 EKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGW---IYGSVTED-ILTGFKMHARGWIS 798 (1085)
T ss_pred hhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCe---eccceech-HHHHHHHHccCCce
Confidence 999999999999999999998888899999999999999999999999999999 89999987 99999999999999
Q ss_pred eeccchhh
Q 003541 798 QDACPWLA 805 (811)
Q Consensus 798 ~~~~~~~~ 805 (811)
+||.|-+.
T Consensus 799 vY~~p~r~ 806 (1085)
T PLN02400 799 IYCMPPRP 806 (1085)
T ss_pred EecCCCcH
Confidence 99987643
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.3e-247 Score=2118.69 Aligned_cols=782 Identities=63% Similarity=1.087 Sum_probs=705.7
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCC
Q 003541 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (811)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~ 84 (811)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||+||||||||||+|| ||
T Consensus 24 ~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~e 102 (1094)
T PLN02436 24 EIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-EE 102 (1094)
T ss_pred cccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-cc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCcc--c--cCCCCCcccCCccccCCCCCCCcccc
Q 003541 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNE--V--SHNHIPRLTGGQEVSGELSAASPEHL 160 (811)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (811)
||++||+||||+|.. ++.+.++++|+|++++|++|++.+.+.+++..+ . ..+++|++++|| +++|++ +++|+
T Consensus 103 e~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~ 178 (1094)
T PLN02436 103 EDDIDDLENEFDYGN-NGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHA 178 (1094)
T ss_pred cccchhhhhhhcCcc-cccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Ccccc
Confidence 888999999999973 555567889999999999999988765443221 2 135789999988 577776 35677
Q ss_pred ccCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCC
Q 003541 161 SMASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (811)
Q Consensus 161 ~~~~~~~~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (811)
.++++.++.|||| ||+|. ..+++++.|||+||+++||||||+||||||+||+||+++++++.+ . +++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~~ 254 (1094)
T PLN02436 179 LIVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNND 254 (1094)
T ss_pred cccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCCC
Confidence 7677776678999 58883 234778999999999999999999999999999999855444333 2 344455554
Q ss_pred CCCCCccCCcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Q 003541 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (811)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL 317 (811)
| ++.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|
T Consensus 255 ~-~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll 333 (1094)
T PLN02436 255 G-DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWIL 333 (1094)
T ss_pred C-CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003541 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (811)
Q Consensus 318 ~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~l 397 (811)
+|++||+||+|.||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||+++|
T Consensus 334 ~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 413 (1094)
T PLN02436 334 DQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 413 (1094)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 003541 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (811)
Q Consensus 398 Tf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~g 477 (811)
|||||+|||+|||+||||||||+|||||||+||+++.+++++|++|+|++|||+|||||||||+|||+|+++++++|++|
T Consensus 414 Tf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~ 493 (1094)
T PLN02436 414 TFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDG 493 (1094)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEe
Q 003541 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (811)
Q Consensus 478 w~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnl 557 (811)
|.|+|||+|||++++|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+||||||+||||||||||
T Consensus 494 ~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNL 573 (1094)
T PLN02436 494 WTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNV 573 (1094)
T ss_pred hhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEec
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhh
Q 003541 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (811)
Q Consensus 558 DcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~A 637 (811)
|||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++|+|+||+|||+|+||||+|||+|
T Consensus 574 DCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~a 653 (1094)
T PLN02436 574 DCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 653 (1094)
T ss_pred ccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCc-c----cccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhh
Q 003541 638 LYGYEPPLKPKHRKPGL-L----SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLM 712 (811)
Q Consensus 638 LyG~~Pp~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 712 (811)
|||++||...+.+...+ | |+|||++++++++..+... +..++.+...+++++++++++.++ +++|++..+
T Consensus 654 LYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 728 (1094)
T PLN02436 654 LYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEK---KKKKNREASKQIHALENIEEGIEG--SNNEKSSET 728 (1094)
T ss_pred eeccCCcccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc--ccchhhhhh
Confidence 99999997665443332 2 2355576665433221111 113344556688889999888777 777888889
Q ss_pred hhhHHHhhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecc
Q 003541 713 SQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGR 792 (811)
Q Consensus 713 ~~~~~~k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~ 792 (811)
+++.|+++||+|++||+|+++++++++.+.+++++|+||+|||||+||++|+||+|||| |||||||| +.|||+||.
T Consensus 729 ~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw---iYGSvTED-v~TG~rLH~ 804 (1094)
T PLN02436 729 PQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGW---IYGSVTED-ILTGFKMHC 804 (1094)
T ss_pred hhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCe---eccceecH-HHHHHHHHc
Confidence 99999999999999999999999999988889999999999999999999999999999 78899987 999999999
Q ss_pred cceeeeeccchhh
Q 003541 793 YSYRIQDACPWLA 805 (811)
Q Consensus 793 ~~~~~~~~~~~~~ 805 (811)
+|||++||.|-++
T Consensus 805 rGWrSvY~~P~r~ 817 (1094)
T PLN02436 805 HGWRSVYCIPKRP 817 (1094)
T ss_pred CCCceEeCCCCch
Confidence 9999999998763
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=9.3e-236 Score=2022.56 Aligned_cols=727 Identities=64% Similarity=1.115 Sum_probs=650.6
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCCCCCCCCCC
Q 003541 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (811)
Q Consensus 13 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~e~~~dd~~ 92 (811)
+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+++||++
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 66799999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 003541 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (811)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (811)
+||+|..+++. +.|++++|++|++.+.+++.. ++++|++++ +++++
T Consensus 91 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------------------- 136 (1044)
T ss_pred hhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------------------
Confidence 99998642211 238899999998876442221 134566665 12332
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCCccCCcccccc
Q 003541 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (811)
Q Consensus 173 vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (811)
| +.|+|+|| |||||+||||||+||+||+ |++.+.+. . + +.+ +..+++|++++++
T Consensus 137 ----~--------~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-~----~--~~~--~~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ----G--------KDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-D----S--DDG--DDKGDEEEYLLAE 190 (1044)
T ss_pred ----C--------CCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-c----c--CCC--CCCCCcccccccc
Confidence 1 35899988 9999999999999999997 44444432 1 1 111 1223578889999
Q ss_pred cCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 003541 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (811)
Q Consensus 253 ~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~ 332 (811)
.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhh
Q 003541 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (811)
Q Consensus 333 drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~W 412 (811)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||+++||||||+|||+||++|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCC
Q 003541 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (811)
Q Consensus 413 VPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~r 492 (811)
|||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++||.|+|||+|||++++
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHH
Q 003541 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (811)
Q Consensus 493 dHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~a 572 (811)
|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+||||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCCCCCCCCCC
Q 003541 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (811)
Q Consensus 573 mcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp~~~~~~~~ 652 (811)
|||||||+.|+++|||||||+|+|++++|+|+|||+|||+++|+|+||+|||+|+||||+|||+||||++||..++.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665554
Q ss_pred Cc-c----cccccCCCcCCCCCCCC-CC--------------Cc-------cCCCCCCCCCCCccccchhhccccCCCCc
Q 003541 653 GL-L----SSLFGGSRKKNSKSSKK-GS--------------DK-------KKSSKHVDPTVPIFSLEDIEEGVEGAGFD 705 (811)
Q Consensus 653 ~~-~----~~~~~~~~~~~~~~~~~-~~--------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (811)
+| | |+|||++++++++..++ .. .+ .+.....+++.+++++++|++++++ ++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 668 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEG--YD 668 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 43 1 23566666554332111 00 00 0001133456678999999998887 55
Q ss_pred h-hhHHhhhhhHHHhhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccc
Q 003541 706 D-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRM 784 (811)
Q Consensus 706 ~-e~~~~~~~~~~~k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~ 784 (811)
+ |++++++++.++|+||+|++||+|+++++++.+.+++++++|+||+|||||+||++|+||+|||| +||||||| +
T Consensus 669 ~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw---~YGSvTED-v 744 (1044)
T PLN02915 669 ELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGW---IYGSVTED-I 744 (1044)
T ss_pred chhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCc---cccccccH-H
Confidence 5 77888999999999999999999999999999988899999999999999999999999999999 67899987 9
Q ss_pred hhheeecccceeeeeccchhh
Q 003541 785 DLWFCYGRYSYRIQDACPWLA 805 (811)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~ 805 (811)
.|||+||.+|||++||.|-++
T Consensus 745 ~TG~rLH~rGWrSvY~~p~r~ 765 (1044)
T PLN02915 745 LTGFKMHCRGWKSVYCMPKRP 765 (1044)
T ss_pred HHHHHHHccCCcEEeeCCCcH
Confidence 999999999999999998643
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=9.1e-230 Score=1971.98 Aligned_cols=733 Identities=66% Similarity=1.127 Sum_probs=659.4
Q ss_pred CCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCCC
Q 003541 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (811)
Q Consensus 6 ~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~e 85 (811)
++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCc--cccCCCCCCCc--cccc
Q 003541 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQ--EVSGELSAASP--EHLS 161 (811)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~ 161 (811)
|++||++|||+|.. ++.+.++++|+|++++|++|++.+...+ .+++|++++|| .+++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDEN-------NQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCCC-------cCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999965 4455678899999999999998764422 24678999987 37788873222 3444
Q ss_pred cCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCCC
Q 003541 162 MASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (811)
Q Consensus 162 ~~~~~~~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (811)
++++. .|||| ||+| .+.+.|||+||++ ||||||+||+||++ .+++
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~--------------~~~~--- 221 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN--------------LGPD--- 221 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc--------------CCCC---
Confidence 45555 48998 5877 4568999999975 99999999999951 1111
Q ss_pred CCCCccCCcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHh
Q 003541 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~ 318 (811)
++++++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+
T Consensus 222 -~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 222 -PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred -CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 2234567788899999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hcccccccccchhhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003541 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (811)
Q Consensus 319 q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lT 398 (811)
|++||+||+|.||++||++||++++++++||+|||||||+||.||||++|+|||||+||+|||++||+|||||||+++||
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999988777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 003541 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (811)
Q Consensus 399 f~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw 478 (811)
||||+|||+||++||||||||+|||||||+||+++.++++++++|+|++||++||+||||||+|||+|++++.++|++||
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEec
Q 003541 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLD 558 (811)
Q Consensus 479 ~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlD 558 (811)
.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+|||||||||||
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLD 540 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLD 540 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEcc
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhh
Q 003541 559 CDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (811)
Q Consensus 559 cDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~AL 638 (811)
||||+|||++||+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++|+|+||+|||+||||||+|||+||
T Consensus 541 CDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~AL 620 (1040)
T PLN02189 541 CDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQAL 620 (1040)
T ss_pred CccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcccccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHH
Q 003541 639 YGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (811)
Q Consensus 639 yG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 718 (811)
||++||...+.+..++|++|||.+++++++.+. +.+... ++.++ ++++++..+++++++
T Consensus 621 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-------~~~~~--~~~~~~~~~~~~~~~ 679 (1040)
T PLN02189 621 YGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKN------------GLNGEV-------AALGG--MESDKEMLMSQMNFE 679 (1040)
T ss_pred eccCcccccccccccccchhhhccccccccccc------------cccccc-------ccccc--cchhhhhhhhhhhhH
Confidence 999999776666665555556555544221110 000000 11112 344556678889999
Q ss_pred hhcCCcHHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeee
Q 003541 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQ 798 (811)
Q Consensus 719 k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~ 798 (811)
++||+|++||+|++.+.++.+..++++++++||++|+||+||++|+||+|||| |||||||| +.|||+||.+|||++
T Consensus 680 ~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw---~YGSvTED-~~TG~rlH~rGWrSv 755 (1040)
T PLN02189 680 KKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGW---IYGSITED-ILTGFKMHCRGWRSI 755 (1040)
T ss_pred hhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCe---eccccccH-HHHHHHHHccCCceE
Confidence 99999999999999888888888889999999999999999999999999999 89999987 999999999999999
Q ss_pred eccchhh
Q 003541 799 DACPWLA 805 (811)
Q Consensus 799 ~~~~~~~ 805 (811)
||.|-+.
T Consensus 756 Y~~p~r~ 762 (1040)
T PLN02189 756 YCMPKRA 762 (1040)
T ss_pred ecCCCcH
Confidence 9987543
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=6.1e-219 Score=1873.84 Aligned_cols=695 Identities=62% Similarity=1.074 Sum_probs=611.8
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCCCCCCCCCC
Q 003541 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (811)
Q Consensus 13 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~e~~~dd~~ 92 (811)
-.+++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||+++||+|
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~ 68 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVE 68 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhh
Confidence 3578999999999999999999999999999999999999999999999999999998 256688999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 003541 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (811)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (811)
+||+-+ .+++ .++|++|++.+ .+.+++|++++ . ++|
T Consensus 69 ~~~~~~------~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~-~--~~~--------------------- 104 (977)
T PLN02195 69 TKHSRN------QSTM-----ASHLNDTQDVG---------IHARHISSVST-V--DSE--------------------- 104 (977)
T ss_pred hhhccc------hhhh-----hhhcccCcCCC---------CCCcccccccc-C--CCc---------------------
Confidence 998421 2232 36777776532 11123344433 0 111
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCCccCCcccccc
Q 003541 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (811)
Q Consensus 173 vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (811)
+.. +|||++||||||+||.||+|++.++.+... .++ +++ ++.+++|+++ |+
T Consensus 105 ---------------~~~-------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~---~~~--~~~~~~~~~~-~~ 155 (977)
T PLN02195 105 ---------------LND-------EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKA---QIP--PEQQMEEKPS-AD 155 (977)
T ss_pred ---------------ccC-------ccCCHHHHHHHHHHHHhhhhhccccccccc-ccc---CCC--CccCCccccc-cc
Confidence 111 399999999999999999877765555322 222 222 2334567776 99
Q ss_pred cCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 003541 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (811)
Q Consensus 253 ~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~ 332 (811)
.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|.||+
T Consensus 156 ~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 235 (977)
T PLN02195 156 AYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYI 235 (977)
T ss_pred ccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhh
Q 003541 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (811)
Q Consensus 333 drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~W 412 (811)
|||++||++++++++||+|||||||+||.||||++|+|||||+||+|||++||+|||||||+|+||||||+|||+|||+|
T Consensus 236 drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~W 315 (977)
T PLN02195 236 DRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKW 315 (977)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhh
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCC
Q 003541 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (811)
Q Consensus 413 VPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~r 492 (811)
|||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++||.|+|||+|||++++
T Consensus 316 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~ 395 (977)
T PLN02195 316 VPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTR 395 (977)
T ss_pred cccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHH
Q 003541 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (811)
Q Consensus 493 dHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~a 572 (811)
|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||++|||||+|||||||||||||||+|||++||+|
T Consensus 396 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~A 475 (977)
T PLN02195 396 DHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREA 475 (977)
T ss_pred CCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCCCCCCCCCC
Q 003541 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (811)
Q Consensus 573 mcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp~~~~~~~~ 652 (811)
||||+||+.|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||..++.++.
T Consensus 476 MCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~ 555 (977)
T PLN02195 476 MCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKS 555 (977)
T ss_pred HhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665555
Q ss_pred Cc-ccccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHHhhcCCcHHHHhhh
Q 003541 653 GL-LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 731 (811)
Q Consensus 653 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~FG~S~~fi~S~ 731 (811)
++ ||+|||+++++.... ..+..+..++.+.+.++++++++++. .+.|++.++++++++++||+|++||+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~fG~S~~fi~S~ 627 (977)
T PLN02195 556 SSSSSSCCCPTKKKPEQD---PSEIYRDAKREDLNAAIFNLREIDNY-----DEYERSMLISQMSFEKTFGLSSVFIEST 627 (977)
T ss_pred cccccccccccccccccc---chhhcccccccccccccccccccccc-----chhhhhhhhhhhHHHHhhcccHHHHHHH
Confidence 44 444555554442211 11112223334444556666654331 2336677889999999999999999999
Q ss_pred hhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeeeeccchhh
Q 003541 732 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLA 805 (811)
Q Consensus 732 ~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~~~ 805 (811)
+++.++.+..++++++|+||++|+||+||++|+||+|||| |||||||| +.||++||.+|||++||.|.+.
T Consensus 628 ~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw---~YGSvTED-v~TG~rlH~rGWrSvY~~p~r~ 697 (977)
T PLN02195 628 LMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGW---IYGSVTED-ILTGFKMHCRGWRSIYCMPVRP 697 (977)
T ss_pred HHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCe---eccceecH-HHHHHHHHccCCcEEecCCccH
Confidence 9999988888889999999999999999999999999999 78899987 9999999999999999999763
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=2.5e-188 Score=1628.62 Aligned_cols=665 Identities=48% Similarity=0.856 Sum_probs=551.0
Q ss_pred CccccccCCccccc--cCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCCCC
Q 003541 9 VKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 86 (811)
Q Consensus 9 ~k~~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~e~ 86 (811)
.+.+++..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.| +.||+||++||.+ | +++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~~ 183 (1135)
T PLN02248 116 HPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LDD 183 (1135)
T ss_pred CcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--ccc
Confidence 46688889999998 99999999999999999 999999999999999996 7999999999865 3 222
Q ss_pred CCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccC-CCCCcccCCccccCCCCCCCccccccCCC
Q 003541 87 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMASP 165 (811)
Q Consensus 87 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (811)
+.+|.+.+ ... ++... .++.+...+. .+...+..+| +|||+ |+
T Consensus 184 ~~~~~~~~----------~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~----- 227 (1135)
T PLN02248 184 EVPDESSG----------ALP----LPPPG----------GSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN----- 227 (1135)
T ss_pred cccccccc----------ccc----CCCCC----------CcccccccccccccchhccCC--CCCCC-----Cc-----
Confidence 22222211 111 11100 0111111000 0011233445 57776 43
Q ss_pred CCCCCCccccCCCCCCCCCccccCCCCCCCCCCcccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCCccC
Q 003541 166 GVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVD 245 (811)
Q Consensus 166 ~~~~~~~vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (811)
|||+++ +++|||||+.|++... .|++.+ + . .
T Consensus 228 --------------------~w~~~~--~~~~~~~~~~~~~~~~----------------------~~~~~~---~-~-~ 258 (1135)
T PLN02248 228 --------------------RWLFET--KGTYGYGNAVWPKDDG----------------------YGDDGG---G-G-G 258 (1135)
T ss_pred --------------------eeeeec--ccccccccccCccccc----------------------cCCCCC---c-c-c
Confidence 899998 8899999999998632 111101 0 1 1
Q ss_pred CcccccccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 003541 246 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 325 (811)
Q Consensus 246 ~~~~~~~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q~~kw~P 325 (811)
...+++++|+||+||+++++++|+|||++++++|+++++||+|||+|++.+++|+|+++|+||+||+|+|+|+|++||+|
T Consensus 259 ~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~P 338 (1135)
T PLN02248 259 PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCP 338 (1135)
T ss_pred cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 11568999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccchhhhhhhhhhhcCC-----CCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 003541 326 VNRETYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (811)
Q Consensus 326 v~R~t~~drL~~r~e~~~-----~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~ 400 (811)
|+|.||+++|++||+.++ ++++||+|||||||+||.||||++|+||||||||+|||++||+||||||||++||||
T Consensus 339 v~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~ 418 (1135)
T PLN02248 339 INRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFE 418 (1135)
T ss_pred cccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHH
Confidence 999999999999998543 356799999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 003541 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAK----------- 469 (811)
Q Consensus 401 aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~----------- 469 (811)
||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++.
T Consensus 419 AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~ 498 (1135)
T PLN02248 419 AMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAR 498 (1135)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999641
Q ss_pred -------------------hccCccccccccCCCCCCCCC--------CCCCCcceeeeccCCC------------CCCC
Q 003541 470 -------------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLDA 510 (811)
Q Consensus 470 -------------------~~~~~~~gw~m~dgt~wpg~~--------~rdHp~iIqV~l~~~G------------~~d~ 510 (811)
.+++++++| |+|||+|||+| ++|||+||||||++++ ..|.
T Consensus 499 ~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 499 EEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred HHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 134678889 99999999994 4699999999998754 1232
Q ss_pred C--CCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE
Q 003541 511 E--GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (811)
Q Consensus 511 ~--g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV 588 (811)
+ +.+||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfV 656 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYV 656 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEE
Confidence 2 348999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred ccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCCCCCCCCCCCcccccccCCCcCCCC
Q 003541 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSK 668 (811)
Q Consensus 589 Q~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~ 668 (811)
||||+|+|++++|+|+||++|||+++|+|+||+|||+||||||+|||+||||++||+.++..+. |+ |||+.+++++.
T Consensus 657 QFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~~-~~~~~~~~~~~ 733 (1135)
T PLN02248 657 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--FG-SCKFTKKKKKE 733 (1135)
T ss_pred cCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--cc-ccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987654443 22 23333332211
Q ss_pred CCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHHhhcCCcHHHHhhhhh-hcCCCC--------
Q 003541 669 SSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGVP-------- 739 (811)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~FG~S~~fi~S~~~-e~~~~~-------- 739 (811)
... +.+. .+++++ .+++ ++.+.++|+||+|+.||+|+.. +.++.+
T Consensus 734 ~~~--------------~~~~-~~~~~~-------~~~~----~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~ 787 (1135)
T PLN02248 734 TSA--------------SEPE-EQPDLE-------DDDD----LELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVK 787 (1135)
T ss_pred ccc--------------cccc-cccccc-------ccch----hhhhhhhhhhccchhhhhhhHHHhhcccccccccccc
Confidence 100 0000 011111 1111 3467789999999999999953 322221
Q ss_pred -----------CCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeeeeccchhh
Q 003541 740 -----------QSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLA 805 (811)
Q Consensus 740 -----------~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~~~ 805 (811)
....++++|+||++||||+||++|+||+|||| +||||||| +.||++||.+|||++||.|-+.
T Consensus 788 ~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~---~YGSvTED-v~TGlrLH~rGWrSvY~~p~r~ 860 (1135)
T PLN02248 788 NGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGW---IYGSVTED-VVTGYRMHNRGWRSVYCVTKRD 860 (1135)
T ss_pred cccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCe---eecceech-HHHHHHHHhcCCceEeCCCChH
Confidence 22346789999999999999999999999999 78999987 9999999999999999986543
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.2e-154 Score=1313.15 Aligned_cols=447 Identities=67% Similarity=1.100 Sum_probs=421.2
Q ss_pred eeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhh
Q 003541 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (811)
Q Consensus 351 VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YF 430 (811)
|||||||+||.||||++|+|||||+||+|||++||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCC
Q 003541 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (811)
Q Consensus 431 s~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~ 510 (811)
+++.++++++++|+|++||++|||||||||+|||+|+++.+++|+++|+|+||++|||++++|||+|||||++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEcc
Q 003541 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (811)
Q Consensus 511 ~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~ 590 (811)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCCCCCCCCCCCcccccccCCCcCCCCCC
Q 003541 591 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (811)
Q Consensus 591 PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (811)
||+|+|++++|+|+|++++||+++|+|+||+|||+|+||||+|||+||||++||...+....+|||+|||++++|+++..
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777765555555555544333
Q ss_pred CCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHHhhcCCcHHHHhhhhhhcCCCCCCCChHHHHHH
Q 003541 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (811)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~e 750 (811)
++. +++..++.+++.+++++++++|+.++ .++|++..+++++|+++||+|++||+|+.+++++.+.+.+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 23344567788899999999998776 67788899999999999999999999999988989999999999999
Q ss_pred HHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeeeeccchhh
Q 003541 751 AIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLA 805 (811)
Q Consensus 751 A~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~~~ 805 (811)
|+||+||+||++|+||||||| |||||||| |.|||+||+||||++||.|-+.
T Consensus 397 A~~V~sC~YE~~T~WGkevGw---iYGSvtED-v~TG~rmH~rGWrSvYc~p~r~ 447 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGW---IYGSVTED-VLTGFRMHCRGWRSVYCNPKRP 447 (720)
T ss_pred HHHHhcCCccccCCcccccce---EEEecccc-cccceeEeeCceeeEEeccccc
Confidence 999999999999999999999 78999986 9999999999999999999764
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=6.6e-151 Score=1285.64 Aligned_cols=475 Identities=37% Similarity=0.673 Sum_probs=425.7
Q ss_pred ccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 003541 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETY 331 (811)
Q Consensus 252 ~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~ 331 (811)
...+||++++++++++ ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.|+
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3458999999999985 899999999999999999999999887 689999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhh
Q 003541 332 LDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARK 411 (811)
Q Consensus 332 ~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~ 411 (811)
|++|++|++ +||+||||||||||.||||++|+|||||+||+|||++||+|||||||+++||||||.|||+||++
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999984 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC--CCCCCC
Q 003541 412 WVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGN 489 (811)
Q Consensus 412 WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dg--t~wpg~ 489 (811)
||||||||+|||||||+||+.+. +.+..++|++||++||+||||||+||++.. ....|.+.++ ++|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~---~~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPP---VATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 99999999999999999999853 344568999999999999999999999974 2345766656 689999
Q ss_pred CCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHH
Q 003541 490 NTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAL 569 (811)
Q Consensus 490 ~~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~L 569 (811)
+++|||+|||||++++|+ +.++++||+||||||||||+++||+||||||+||||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999775 4478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCC-CcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCCCCCC
Q 003541 570 REAMCFMMDPNL-GKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPK 648 (811)
Q Consensus 570 r~amcfflDp~~-g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp~~~~ 648 (811)
|+|||||||++. ++++|||||||+|+ |+|+||++|||+++++|+||+|||+|+||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 999999999874 45899999999998 789999999999999999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHHhhcCCcHHHH
Q 003541 649 HRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFV 728 (811)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~FG~S~~fi 728 (811)
..+. .+ .+ +++ .+++.+++++||+|++||
T Consensus 381 ~~~~----------------~~----------------~~------------------~~~-~~~~~~~~~~fg~s~~f~ 409 (756)
T PLN02190 381 DGSL----------------SS----------------VA------------------TRE-FLAEDSLAREFGNSKEMV 409 (756)
T ss_pred cccc----------------cc----------------cc------------------ccc-ccchhhhhhhcCCcHHHH
Confidence 1100 00 00 000 133456789999999999
Q ss_pred hhhhhhcCCCCC-CCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeeeeccchhhh
Q 003541 729 ASTLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWLAV 806 (811)
Q Consensus 729 ~S~~~e~~~~~~-~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~~~~ 806 (811)
+|+.++..+.+. ..+.+++++||++|+||+||++|+||+|||| +|||+||| +.|||+||+||||++||.|-++.
T Consensus 410 ~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~---~ygSitED-~~TGl~mh~rGWrSvY~~p~~~A 484 (756)
T PLN02190 410 KSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGW---LYDSVAED-LNTSIGIHSRGWTSSYISPDPPA 484 (756)
T ss_pred HHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCc---ccceeech-HHHHHHHHccCCceEecCCCchh
Confidence 999865544332 3346789999999999999999999999999 78999987 99999999999999999987643
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=2.3e-141 Score=1210.86 Aligned_cols=455 Identities=36% Similarity=0.652 Sum_probs=411.7
Q ss_pred ccCCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 003541 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (811)
Q Consensus 252 ~~~~pL~rk~~i~~~~~~~yR~livl~lv~l~~yL~wRi~~~~~~a-~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t 330 (811)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4668999999999986 6999999999999999999999887655 789999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhh
Q 003541 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (811)
Q Consensus 331 ~~drL~~r~e~~~~~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk 410 (811)
++|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||++||+|||||||||+||||||.|||+||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999987654 367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC-----CC
Q 003541 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (811)
Q Consensus 411 ~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dg-----t~ 485 (811)
+||||||||+|||||||+||+++ +++|++||++||+||||||+|||+++++ ++++++ |.+.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999987 2578899999999999999999999977 677765 554443 68
Q ss_pred CCCCC-CCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCC
Q 003541 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (811)
Q Consensus 486 wpg~~-~rdHp~iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyin 564 (811)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||++|||||+|||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98875 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcCCCCC
Q 003541 565 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 644 (811)
Q Consensus 565 np~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~Pp 644 (811)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998331
Q ss_pred CCCCCCCCCcccccccCCCcCCCCCCCCCCCccCCCCCCCCCCCccccchhhccccCCCCchhhHHhhhhhHHHhhcCCc
Q 003541 645 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (811)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~FG~S 724 (811)
... ++++ .++++
T Consensus 393 ~~~---------------------------------------------~~~~-----------------------~~~~~ 404 (734)
T PLN02893 393 LIL---------------------------------------------PEIP-----------------------ELNPD 404 (734)
T ss_pred ccc---------------------------------------------hhhh-----------------------hcccc
Confidence 000 0000 01111
Q ss_pred HHHHhhhhhhcCCCCCCCChHHHHHHHHHhhhcccCCCCCCCCcceeecccceeeccccchhheeecccceeeeeccchh
Q 003541 725 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEFLLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPWL 804 (811)
Q Consensus 725 ~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~eVGWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~~ 804 (811)
.. ..+++...++++||++|+||.||++|+||++||| +|||+||| +.|||+||.+|||++||-|-+
T Consensus 405 ~~-----------~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~---~ygsvtED-~~Tg~~lh~~GWrSvY~~p~~ 469 (734)
T PLN02893 405 HL-----------VDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGF---RYGSLVED-YYTGYRLQCEGWKSIFCNPKR 469 (734)
T ss_pred cc-----------cccccchHHHHHHhhhccccccccCCccccccce---Eecccccc-HHHHHHHHhcCCcEEecCCCc
Confidence 11 1233456779999999999999999999999999 78899987 999999999999999998754
Q ss_pred h
Q 003541 805 A 805 (811)
Q Consensus 805 ~ 805 (811)
.
T Consensus 470 ~ 470 (734)
T PLN02893 470 P 470 (734)
T ss_pred h
Confidence 3
No 11
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.4e-43 Score=307.19 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.0
Q ss_pred CccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccccCCCCcccCCCCCCCCC
Q 003541 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (811)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~~~e~~~ 88 (811)
+||++++++|+||||||+||++++|++|||||||+|||||||||||||||+|+|||||||||||||||||+|| |+|||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 556655
Q ss_pred C
Q 003541 89 D 89 (811)
Q Consensus 89 d 89 (811)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=4.1e-35 Score=340.06 Aligned_cols=251 Identities=25% Similarity=0.431 Sum_probs=198.1
Q ss_pred HHHHH-HHHHHHHHHHHHHhcccccch----HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCC
Q 003541 272 RMVIF-LRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (811)
Q Consensus 272 R~liv-l~lv~l~~yL~wRi~~~~~~a----~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~ 346 (811)
|++++ +.+++.++|++||++.+++.. ..++++++++|+++.++.++..+..+.|.+|.+.+. +..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--------PLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--------CCCcc
Confidence 65544 556778999999999987743 346778999999999888888877778887754321 12346
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCc
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaP 426 (811)
.+|+|||+||||| |++.++.+|+.+++++|||.+++.|||+|||+++-|.....+++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~-------------------- 185 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQ-------------------- 185 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhh--------------------
Confidence 7999999999999 99999999999999999999999999999999874432111100
Q ss_pred hhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 003541 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (811)
Q Consensus 427 e~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G 506 (811)
+++.+-+..+.+++++. |
T Consensus 186 ---------------------------~~~~~~~~~~~~l~~~~-----------------------------------~ 203 (713)
T TIGR03030 186 ---------------------------AEAAQRREELKEFCRKL-----------------------------------G 203 (713)
T ss_pred ---------------------------hhhhhhHHHHHHHHHHc-----------------------------------C
Confidence 00000011122232110 2
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcce
Q 003541 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 585 (811)
Q Consensus 507 ~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~v 585 (811)
+.|+.|++ ++|+||||||++++. ++|+||+++||||+ +.|++|++++++| .|| ++
T Consensus 204 -----------v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 204 -----------VNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred -----------cEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 88999985 678999999999996 78999999999998 6899999999998 577 89
Q ss_pred EEEccCccccCCCCc-------ccchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 586 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 586 afVQ~PQ~F~nid~~-------D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
|+||+||.|+|.++. +++.+++.+||..++.|++.++++++|||++++||+||.
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~ 320 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALD 320 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHH
Confidence 999999999998753 345678899999999999999999999999999999995
No 13
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=335.63 Aligned_cols=231 Identities=28% Similarity=0.484 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCC
Q 003541 274 VIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLA 349 (811)
Q Consensus 274 livl~lv~l~~yL~wRi~~~~~~----a~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP 349 (811)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+.+ + +...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~------~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--L------PKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--C------CcccCCCC
Confidence 45566788999999999998763 345677899999999888888877777788775321 1 11235689
Q ss_pred ceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhh
Q 003541 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWY 429 (811)
Q Consensus 350 ~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~Y 429 (811)
.|||+||||| |+..++.+||.+++++|||.+++.|||+|||+++ |+.+++ +++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~la-------~~~---------- 313 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQFA-------QEV---------- 313 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHHHH-------HHC----------
Confidence 9999999999 9999999999999999999999999999999987 111111 100
Q ss_pred hhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCC
Q 003541 430 FAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLD 509 (811)
Q Consensus 430 Fs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d 509 (811)
|
T Consensus 314 ----------------------------------------------------------------------------~--- 314 (852)
T PRK11498 314 ----------------------------------------------------------------------------G--- 314 (852)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 1
Q ss_pred CCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEEE
Q 003541 510 AEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 588 (811)
Q Consensus 510 ~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vafV 588 (811)
+.|+.|++ +.|+||||+|++++. ++|+||++|||||+ +.+++|+++|++| .|| ++|+|
T Consensus 315 --------v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 315 --------VKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred --------cEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 77888874 567999999999996 79999999999997 7999999999876 688 89999
Q ss_pred ccCccccCCCCcc-------cchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 589 QFPQRFDGIDRND-------RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 589 Q~PQ~F~nid~~D-------~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
|+||.|+|.|+.. .+.++++.||..++.|++.++++++|||++++||+||.
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLe 431 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLD 431 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHH
Confidence 9999999987642 25678889999999999999999999999999999994
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.88 E-value=6.6e-22 Score=204.77 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=92.7
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc-CCCCCcceEEEccCccc
Q 003541 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 594 (811)
Q Consensus 516 P~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~~vafVQ~PQ~F 594 (811)
++++|+.|++ +.|+||||||+++...+ ++++||+++|||+. +.|++|++++.+|. || ++|+||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4599999997 55699999999998532 57899999999998 68999999999986 88 89999999999
Q ss_pred cCCCCc-ccc-hhhhhHHHhhhhccccCCCc--ccccccchhhchhhhc
Q 003541 595 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALY 639 (811)
Q Consensus 595 ~nid~~-D~y-~n~n~vFfd~~~~GlDG~qg--p~y~GTgcvfRR~ALy 639 (811)
.|.+.. .+. .-++.+|..+++.|++.|++ .+|+||+.++||+||.
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~ 184 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFM 184 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHH
Confidence 987642 111 12356677778888887764 6899999999999985
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.86 E-value=1.5e-20 Score=218.71 Aligned_cols=250 Identities=17% Similarity=0.198 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccch---------HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhh
Q 003541 270 PYRMVIFLRLIILGIFLYYRIKNPVHNA---------IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (811)
Q Consensus 270 ~yR~livl~lv~l~~yL~wRi~~~~~~a---------~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~drL~~r~e 340 (811)
..|+++++..++..+|..|+....++.. ..+-.+++..+++.+.+-++..+.... .|.... +...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~~--~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKYS--ISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccc--CCcccc
Confidence 4677788888889999999987765421 011122333344433333333322211 111110 100000
Q ss_pred cCCCCCCCCceeEEEeCCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhH
Q 003541 341 REGEPSQLAAVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (811)
Q Consensus 341 ~~~~~~~LP~VDVFV~T~dP~kEPp~vt----~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFC 416 (811)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.+|| +++.+||+|||.++-+.. .|
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e------------ 177 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AE------------ 177 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HH------------
Confidence 1123456899999999999 998754 4555677779998 589999999999972111 00
Q ss_pred HhhCCCCCCchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCc
Q 003541 417 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 496 (811)
Q Consensus 417 kK~~IepRaPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~ 496 (811)
+ +.++++ .++.
T Consensus 178 --------------------------------~----~~~~~L-------~~~~-------------------------- 188 (691)
T PRK05454 178 --------------------------------E----AAWLEL-------RAEL-------------------------- 188 (691)
T ss_pred --------------------------------H----HHHHHH-------HHhc--------------------------
Confidence 0 112222 1110
Q ss_pred ceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh
Q 003541 497 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (811)
Q Consensus 497 iIqV~l~~~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff 576 (811)
+ .-+++.|..|++ |.++||||+|.+++.++ .+.+||++||||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 013488988875 67899999999999754 57799999999998 6899999999988
Q ss_pred c-CCCCCcceEEEccCccccCCCCcccchh----hhhHHHhhhhccccCCCc--ccccccchhhchhhhc
Q 003541 577 M-DPNLGKHVCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALY 639 (811)
Q Consensus 577 l-Dp~~g~~vafVQ~PQ~F~nid~~D~y~n----~n~vFfd~~~~GlDG~qg--p~y~GTgcvfRR~ALy 639 (811)
. || ++|.||+|+.+.|.+. .++. ...++......|++.||+ ..|+|+|+++||+|+.
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~ 309 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFA 309 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHH
Confidence 5 88 8999999999998763 2322 234555567788887773 6799999999999995
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=7.8e-18 Score=180.50 Aligned_cols=170 Identities=26% Similarity=0.329 Sum_probs=125.6
Q ss_pred CCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCch
Q 003541 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (811)
Q Consensus 348 LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe 427 (811)
+|.|+|+||+|| |++.++.+|+.|++++|||. +.|+|.|||+++-|++- |++++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~--------------~~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEI--------------LEELGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHH--------------HHHHHhh-----
Confidence 699999999999 99999999999999999995 89999999999844432 2222100
Q ss_pred hhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCC
Q 003541 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (811)
Q Consensus 428 ~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~ 507 (811)
++..++
T Consensus 109 ------------------------------------------------------------------~~~~~~-------- 114 (439)
T COG1215 109 ------------------------------------------------------------------YGPNFR-------- 114 (439)
T ss_pred ------------------------------------------------------------------cCcceE--------
Confidence 000000
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEE
Q 003541 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (811)
Q Consensus 508 ~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vaf 587 (811)
++|. ...++.|+||+|.++.. +.+++|+++|+|++ +.+++|++++..|.|+. .+|.
T Consensus 115 ----------~~~~------~~~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 115 ----------VIYP------EKKNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ----------EEec------cccCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 1111 23678999999999996 56999999999997 79999999999999874 3479
Q ss_pred EccCccccCCCCcccch-----hhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 588 VQFPQRFDGIDRNDRYA-----NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 588 VQ~PQ~F~nid~~D~y~-----n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
+|.||.+.+.++....+ .....|+-....+.++....+++|++.++||+||.
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~ 227 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALE 227 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHH
Confidence 99999998875411111 12233333333444444678899999999999994
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.67 E-value=5.7e-16 Score=151.02 Aligned_cols=169 Identities=34% Similarity=0.511 Sum_probs=132.4
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+|||+| |++.++..++.|+++.+||.+++.++|.|||.++-|.+ +.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-------~~~------------------ 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-------LAA------------------ 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-------HHH------------------
Confidence 67999999999 88889999999999999999889999999998863222 111
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
.+..+
T Consensus 53 ------------------------------------~~~~~--------------------------------------- 57 (234)
T cd06421 53 ------------------------------------ELGVE--------------------------------------- 57 (234)
T ss_pred ------------------------------------Hhhcc---------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC-CCCCcceEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 587 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD-p~~g~~vaf 587 (811)
.++.|+.+++ +.+.|+||+|.+++. .+++||+++|+|.+ ..|++|.+.+..|.+ + +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0145555553 445899999999995 58999999999998 579999999999976 6 7999
Q ss_pred EccCccccCCCCc----ccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcC
Q 003541 588 VQFPQRFDGIDRN----DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 588 VQ~PQ~F~nid~~----D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
||+++.+.+.+.. ..+......|+..+..+...+...++.|++.+|||++|.-
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ 174 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDE 174 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHH
Confidence 9999999877654 2344455667777777766677788999999999999954
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.64 E-value=3.9e-15 Score=164.28 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=120.7
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCc
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaP 426 (811)
..|.|+|+||+|| |+. .+.+||.|+++.+|| ++.|+|.|||.++-|.+.+.+
T Consensus 73 ~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~---------------------- 124 (444)
T PRK14583 73 GHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA---------------------- 124 (444)
T ss_pred CCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH----------------------
Confidence 5799999999999 875 578999999999999 589999999998744332211
Q ss_pred hhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 003541 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (811)
Q Consensus 427 e~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G 506 (811)
+.++
T Consensus 125 ---------------------------------------~~~~------------------------------------- 128 (444)
T PRK14583 125 ---------------------------------------LLAE------------------------------------- 128 (444)
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1000
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc-CCCCCcce
Q 003541 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHV 585 (811)
Q Consensus 507 ~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~~v 585 (811)
.|++.++.++++ ..||+|+|++++. +++++|+++|+|.+ ++|++|++.+-.|. || ++
T Consensus 129 --------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~~ 186 (444)
T PRK14583 129 --------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----RT 186 (444)
T ss_pred --------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----Ce
Confidence 022444444432 2599999999986 68999999999997 79999999998664 66 79
Q ss_pred EEEccCccccCCCCc-cc-chhhhhHHHhhhhccccCCCccc-ccccchhhchhhhc
Q 003541 586 CYVQFPQRFDGIDRN-DR-YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (811)
Q Consensus 586 afVQ~PQ~F~nid~~-D~-y~n~n~vFfd~~~~GlDG~qgp~-y~GTgcvfRR~ALy 639 (811)
+.||..++..|.... .+ ...+...++..+.++...++..+ ..|++++|||+||.
T Consensus 187 g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~ 243 (444)
T PRK14583 187 GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALA 243 (444)
T ss_pred EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHH
Confidence 999998876553211 11 11234445556666666666554 46899999999993
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.60 E-value=2.1e-14 Score=142.24 Aligned_cols=171 Identities=22% Similarity=0.286 Sum_probs=122.0
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+||+|| |. ..+..+|.|+++.+||.+++.|+|.|| +++-|++.+.+. .+ ++
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~~-------~~--------- 56 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---VE-------EY--------- 56 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---HH-------HH---------
Confidence 67999999998 85 678999999999999998999999998 666454433221 00 00
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
..
T Consensus 57 ----------------------------~~-------------------------------------------------- 58 (232)
T cd06437 57 ----------------------------AA-------------------------------------------------- 58 (232)
T ss_pred ----------------------------hh--------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV 588 (811)
.-|+++++.+.+++| +|++|+|.+++. +.++||+++|+|.+ +.|++|.+++.+|.++ ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 002377777766544 699999999995 58999999999998 5899999988888787 79999
Q ss_pred ccCccccCCCCcc--cc-hhhhhHHHhhhhccccCCCcc-cccccchhhchhhhc
Q 003541 589 QFPQRFDGIDRND--RY-ANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALY 639 (811)
Q Consensus 589 Q~PQ~F~nid~~D--~y-~n~n~vFfd~~~~GlDG~qgp-~y~GTgcvfRR~ALy 639 (811)
|....+.+.+.+- ++ .-....+|...+.+....+.. .++|++++|||++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~ 175 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIE 175 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHH
Confidence 9987766554321 11 111222455545554444443 368999999999883
No 20
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.54 E-value=1.5e-13 Score=151.86 Aligned_cols=124 Identities=18% Similarity=0.341 Sum_probs=93.4
Q ss_pred CCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCC
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepR 424 (811)
++.+|.|+|+||+|| |. ..+.+||.|+++.+||.+++.|+|.|||+++-|.+.+.++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 356899999999999 76 7899999999999999999999999999998544422221
Q ss_pred CchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~ 504 (811)
.++ +|. +
T Consensus 102 ------------------------------------------~~~------------------------~~~-v------ 108 (439)
T TIGR03111 102 ------------------------------------------QNE------------------------FPG-L------ 108 (439)
T ss_pred ------------------------------------------HHh------------------------CCC-e------
Confidence 000 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc-CCCCCc
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (811)
Q Consensus 505 ~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~ 583 (811)
.++++ ++ .+.||+|+|++++. ++++||+++|+|++ +++++|++++..|. ||
T Consensus 109 ------------~v~~~--~~-----~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 109 ------------SLRYM--NS-----DQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred ------------EEEEe--CC-----CCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 02222 21 24799999999996 68999999999998 69999999999885 66
Q ss_pred ceEEEccCc
Q 003541 584 HVCYVQFPQ 592 (811)
Q Consensus 584 ~vafVQ~PQ 592 (811)
+++.|+..+
T Consensus 161 ~v~~v~g~~ 169 (439)
T TIGR03111 161 DIHAMTGVI 169 (439)
T ss_pred CeEEEEeEE
Confidence 566665443
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=148.97 Aligned_cols=166 Identities=22% Similarity=0.256 Sum_probs=118.0
Q ss_pred CCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCC
Q 003541 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (811)
Q Consensus 346 ~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRa 425 (811)
...|.|.|+||+|| |+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~--------------------- 103 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR--------------------- 103 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 45899999999999 85 6789999999999999 689999999999733221111
Q ss_pred chhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCC
Q 003541 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (811)
Q Consensus 426 Pe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~ 505 (811)
+.+
T Consensus 104 ----------------------------------------~~~------------------------------------- 106 (420)
T PRK11204 104 ----------------------------------------LAA------------------------------------- 106 (420)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcc
Q 003541 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (811)
Q Consensus 506 G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~ 584 (811)
..|++.++.++++ ..||+|+|.+++. ++++||+++|+|.+ +.|++|.+++..| .|| +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----C
Confidence 0133667776543 2499999999996 68999999999997 6899999999988 577 7
Q ss_pred eEEEccCccccCCCCcccchh----hhhHHHhhhhccccCCCccc-ccccchhhchhhhc
Q 003541 585 VCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (811)
Q Consensus 585 vafVQ~PQ~F~nid~~D~y~n----~n~vFfd~~~~GlDG~qgp~-y~GTgcvfRR~ALy 639 (811)
++.||...+..|... ..+. +...++.....+....+..+ ..|+++++||++|.
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 222 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALH 222 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHH
Confidence 999999887765432 1121 11222222233332233333 36888999999984
No 22
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.53 E-value=1.5e-13 Score=137.65 Aligned_cols=170 Identities=22% Similarity=0.299 Sum_probs=121.4
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+||++| |+ ..+..||.|+++.+||.+++.|+|.|||.++-|.+.+.+ +.
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~--------------~~-------- 54 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA--------------LR-------- 54 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH--------------hc--------
Confidence 78999999999 86 778999999999999988899999999988744332111 00
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
. +
T Consensus 55 ---------------------------------------~-----~---------------------------------- 56 (241)
T cd06427 55 ---------------------------------------L-----P---------------------------------- 56 (241)
T ss_pred ---------------------------------------c-----C----------------------------------
Confidence 0 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV 588 (811)
...+++++.+.+ -..|++|+|++++. +.|+||+.+|+|.+ ..+++|.+++.+|... ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001144443322 23699999999995 68999999999998 5799999999988631 1389999
Q ss_pred ccCccccCCCCcc---cchhhhhHHHhhhhccccCCCccc-ccccchhhchhhhc
Q 003541 589 QFPQRFDGIDRND---RYANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (811)
Q Consensus 589 Q~PQ~F~nid~~D---~y~n~n~vFfd~~~~GlDG~qgp~-y~GTgcvfRR~ALy 639 (811)
|.+..+.+...+- .+......+|...+++....+.++ +.|++.++||++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~ 174 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLR 174 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHH
Confidence 9998887654221 112222344555666666666554 56889999999983
No 23
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.50 E-value=2.4e-13 Score=132.53 Aligned_cols=115 Identities=17% Similarity=0.062 Sum_probs=84.5
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhccc-------CCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEcc
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAV-------LTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSav-------ltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~ 590 (811)
+.++.++... ....|++|||.+++.+.- -..+++|+++|+|.. ..|++|++++.+|.+| +++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEee
Confidence 6666654211 233699999999996410 012489999999998 6899999999999888 7999999
Q ss_pred CccccCCCCcc--c-chhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 591 PQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 591 PQ~F~nid~~D--~-y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
+.++.|.+.+- + +..+...++.+++.++..++...+.|+|++|||+||.
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~ 176 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALD 176 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHH
Confidence 99998865432 1 1223344455677777777766689999999999996
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.49 E-value=7e-13 Score=130.84 Aligned_cols=111 Identities=24% Similarity=0.358 Sum_probs=77.0
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.++..++. ...||||+|.+++.+. .+++||+++|+|-. ..|++|.+.+.+|.++ +++.||+++.+.+.
T Consensus 58 i~~i~~~~~----~G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPL----PGAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCC----CCCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 555655543 3469999999999742 46899999999986 6899999999998776 79999998776543
Q ss_pred CCcccch----hhhhHHHhhhhccccCCCcccccccchhhchhhhcC
Q 003541 598 DRNDRYA----NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 598 d~~D~y~----n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
.. ..+. -....+|...+.........+..|+++++||+++.-
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~ 172 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDD 172 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHH
Confidence 22 1111 111223333334444455566789999999999843
No 25
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.47 E-value=2.4e-14 Score=140.12 Aligned_cols=172 Identities=30% Similarity=0.439 Sum_probs=99.9
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+||++| |+. .+..||.|+++.+|| ++.++|+||+.++-|.+.+.
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~------------------------- 49 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILR------------------------- 49 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHH-------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHH-------------------------
Confidence 78999999998 764 899999999999995 59999999998863222111
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
++.+.. +..
T Consensus 50 ------------------------------------~~~~~~---~~~-------------------------------- 58 (228)
T PF13641_consen 50 ------------------------------------ALAARY---PRV-------------------------------- 58 (228)
T ss_dssp ------------------------------------HHHHTT---GG---------------------------------
T ss_pred ------------------------------------HHHHHc---CCC--------------------------------
Confidence 111100 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV 588 (811)
.+.++.+.+.+ ....|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| ++++|
T Consensus 59 --------~v~vi~~~~~~--g~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 59 --------RVRVIRRPRNP--GPGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----H--HHHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred --------ceEEeecCCCC--CcchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 15677665422 123799999999996 56999999999998 5899999999999877 89999
Q ss_pred ccCccccCCCCcccchhhhhHHHh----hhhccccCCCcccccccchhhchhhhc---CCCC
Q 003541 589 QFPQRFDGIDRNDRYANRNTVFFD----INLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (811)
Q Consensus 589 Q~PQ~F~nid~~D~y~n~n~vFfd----~~~~GlDG~qgp~y~GTgcvfRR~ALy---G~~P 643 (811)
|++..+++ +.+ .+..-...+|. ....+...++.+++.|++++|||++|. |++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC
Confidence 98886665 222 22222223321 123444555567789999999999993 5555
No 26
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.45 E-value=1.6e-12 Score=147.40 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCC
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~l-alDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRa 425 (811)
..|.|+|+||.+| |. .++.+||.++| ++||| ++.|+|.||+..+-|.+.+.+. + +
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l---~-------~-------- 119 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL---A-------A-------- 119 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH---H-------H--------
Confidence 4899999999999 86 78999999975 79997 7999999999887554433221 0 0
Q ss_pred chhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCC
Q 003541 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (811)
Q Consensus 426 Pe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~ 505 (811)
.||+
T Consensus 120 -------------------------------------------------------------------~~p~--------- 123 (504)
T PRK14716 120 -------------------------------------------------------------------RYPR--------- 123 (504)
T ss_pred -------------------------------------------------------------------HCCC---------
Confidence 1222
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhccc--CCCC---CEEEEecCCCCCCcHHHHHHHhhhhcCCC
Q 003541 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV--LTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 580 (811)
Q Consensus 506 G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSav--ltng---pfIlnlDcDhyinnp~~Lr~amcfflDp~ 580 (811)
+..+. .+++ ..+.||+|||.+++.... ...| ++|+++|||.+ ++|++|+...-++-|
T Consensus 124 ------------v~~vv-~~~~--gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHD--GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCC--CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 22111 1222 235899999999985310 1134 99999999998 689999976554433
Q ss_pred CCcceEEEccCccccCCCCccc----chhhhhHHHhhhhccccCCCccc-ccccchhhchhhhc
Q 003541 581 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (811)
Q Consensus 581 ~g~~vafVQ~PQ~F~nid~~D~----y~n~n~vFfd~~~~GlDG~qgp~-y~GTgcvfRR~ALy 639 (811)
.++||.|....+...+.. |..+...++...+..++.+++++ .+|||++|||++|.
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 468999987665443322 22222223444566778888765 78999999999997
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.38 E-value=1e-11 Score=134.37 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=112.4
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCc
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaP 426 (811)
..|.|.|+||++| |.. .+.+|+.|+++.|||. +.|+|.||+.++-|.+.+.+
T Consensus 39 ~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~---------------------- 90 (373)
T TIGR03472 39 AWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR---------------------- 90 (373)
T ss_pred CCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH----------------------
Confidence 4899999999999 875 5789999999999995 89999999888743331111
Q ss_pred hhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 003541 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (811)
Q Consensus 427 e~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G 506 (811)
+.+ .||.
T Consensus 91 ---------------------------------------~~~------------------------~~p~---------- 97 (373)
T TIGR03472 91 ---------------------------------------LRA------------------------DFPD---------- 97 (373)
T ss_pred ---------------------------------------HHH------------------------hCCC----------
Confidence 100 0110
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceE
Q 003541 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVC 586 (811)
Q Consensus 507 ~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~va 586 (811)
.++.++...++. ..+.|++|+|++++. +.+++|+++|+|.. +.|++|++.+..|.|| +++
T Consensus 98 ---------~~i~~v~~~~~~--G~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRH--GPNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DVG 157 (373)
T ss_pred ---------CceEEEECCCCC--CCChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Ccc
Confidence 125555444332 355799999998875 68999999999997 5899999999999888 789
Q ss_pred EEccCccccCCCCcccchhh------hhHHHhhhhccccCCCc-ccccccchhhchhhhc
Q 003541 587 YVQFPQRFDGIDRNDRYANR------NTVFFDINLRGLDGIQG-PVYVGTGCVFNRTALY 639 (811)
Q Consensus 587 fVQ~PQ~F~nid~~D~y~n~------n~vFfd~~~~GlDG~qg-p~y~GTgcvfRR~ALy 639 (811)
.|+++.+..+. .. +..+ +..|+...+.. .-++. .+..|++.+|||++|.
T Consensus 158 ~V~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~ 213 (373)
T TIGR03472 158 LVTCLYRGRPV--PG-FWSRLGAMGINHNFLPSVMVA-RALGRARFCFGATMALRRATLE 213 (373)
T ss_pred eEeccccCCCC--CC-HHHHHHHHHhhhhhhHHHHHH-HhccCCccccChhhheeHHHHH
Confidence 99986443221 11 2111 11122111111 11122 3467999999999994
No 28
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.36 E-value=6.3e-12 Score=120.85 Aligned_cols=103 Identities=20% Similarity=0.114 Sum_probs=72.6
Q ss_pred cccchhhhHHHHHhcc-cCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCccc---chhh
Q 003541 531 HHKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---YANR 606 (811)
Q Consensus 531 hh~KAGALNalLrvSa-vltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~---y~n~ 606 (811)
...|++|+|.+++... .-+++++|+++|+|.. +.|++|++++-.|.+. ...||....+.+.+.+.. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 3469999999998641 1247999999999998 5799999999988653 346888777665443211 1222
Q ss_pred hhHHHhhhhccccCCCcc-cccccchhhchhhhc
Q 003541 607 NTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALY 639 (811)
Q Consensus 607 n~vFfd~~~~GlDG~qgp-~y~GTgcvfRR~ALy 639 (811)
..+++.+...++..+++. .+.|+|.+|||++|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 168 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVLR 168 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHHH
Confidence 333444455566666654 579999999999995
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.35 E-value=7.7e-12 Score=147.26 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=67.6
Q ss_pred ccchhhhHHHHHhcccC---CCC--CEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccc---
Q 003541 532 HKKAGAMNALVRVSAVL---TNG--PFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRY--- 603 (811)
Q Consensus 532 h~KAGALNalLrvSavl---tng--pfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y--- 603 (811)
+.||+|||.++...... +.+ ++++++|||-+ +.|++|+ .+-+|.++ . ++||.|..-.+...+...
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 47999999999864111 133 46888999997 6999998 67788876 3 899999663332222222
Q ss_pred -hhhhhHHHhhhhccccCCCccc-ccccchhh-ch
Q 003541 604 -ANRNTVFFDINLRGLDGIQGPV-YVGTGCVF-NR 635 (811)
Q Consensus 604 -~n~n~vFfd~~~~GlDG~qgp~-y~GTgcvf-RR 635 (811)
..+....+...++++..++|++ +.|||++| ||
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr 239 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRR 239 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecc
Confidence 2333334456778899997754 78999999 55
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.29 E-value=2.6e-11 Score=117.42 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=110.9
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhh
Q 003541 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (811)
Q Consensus 353 VFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~ 432 (811)
|+|||+| |+ ..+..||.|+++.+||.+++.|+|.|||.++-|.+.+. ++
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----~~----------------------- 49 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----FA----------------------- 49 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH----HH-----------------------
Confidence 6899998 75 78999999999999998889999999998873332111 00
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCC
Q 003541 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (811)
Q Consensus 433 k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g 512 (811)
+ +
T Consensus 50 ---------------------------------~--~------------------------------------------- 51 (229)
T cd04192 50 ---------------------------------A--A------------------------------------------- 51 (229)
T ss_pred ---------------------------------H--h-------------------------------------------
Confidence 0 0
Q ss_pred CCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCc
Q 003541 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (811)
Q Consensus 513 ~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ 592 (811)
...|++.++.++. + .-..|+.++|.++.. +.++||+++|+|.+ ..|++|.+.+..|.++ ..++|+.++
T Consensus 52 ~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR-V--SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC-c--ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555442 1 234788999999985 67999999999997 5799999999988765 578899998
Q ss_pred cccCCCCc-ccchhhhhHHHhhhhccccCCCcc-cccccchhhchhhh
Q 003541 593 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTAL 638 (811)
Q Consensus 593 ~F~nid~~-D~y~n~n~vFfd~~~~GlDG~qgp-~y~GTgcvfRR~AL 638 (811)
.+...+.. ..+..-...++.....+.-+++.+ +..|++.+|||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~ 167 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAF 167 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHH
Confidence 87622211 111111111122222333344444 45688889999998
No 31
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.27 E-value=1.2e-10 Score=116.10 Aligned_cols=127 Identities=25% Similarity=0.333 Sum_probs=97.2
Q ss_pred CCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCC
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepR 424 (811)
....|.|.|+|||+| |. ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 356899999999998 65 678999999999999988899999999998733221110
Q ss_pred CchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~ 504 (811)
+.+
T Consensus 81 -----------------------------------------~~~------------------------------------ 83 (251)
T cd06439 81 -----------------------------------------YAD------------------------------------ 83 (251)
T ss_pred -----------------------------------------Hhh------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcc
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (811)
Q Consensus 505 ~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~ 584 (811)
. ++.++..+++ ..|++|+|.+++. +++++|+++|+|.++ .+++|.+.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 1344444432 3589999999996 578999999999985 699999999999776 6
Q ss_pred eEEEccCccccCC
Q 003541 585 VCYVQFPQRFDGI 597 (811)
Q Consensus 585 vafVQ~PQ~F~ni 597 (811)
+++|+....+.+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8889887776544
No 32
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.24 E-value=6.9e-11 Score=115.09 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=101.8
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+||+|| |.. .+..+|-|+++.+||. +.++|.|||+++-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999999 764 4789999999999995 89999999999743332211
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
+..+ ||.+
T Consensus 51 -------------------------------------~~~~------------------------~~~~----------- 58 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPNV----------- 58 (196)
T ss_pred -------------------------------------HHHH------------------------CCCC-----------
Confidence 1000 0000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV 588 (811)
++.|+...++.| ...|++|||.+++. +.++||+++|+|.. ..|++|.+.+-.|.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 033444433222 33689999999995 68999999999997 5899999999988887 67888
Q ss_pred ccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 589 Q~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
+.. +..|+++++||+++.
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~~ 137 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVLD 137 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHHH
Confidence 865 577899999999995
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.22 E-value=1.5e-10 Score=113.85 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=68.3
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHH
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFf 611 (811)
..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.++ +++.|+..+.+.+.+.. .+......++
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~~ 132 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEYL 132 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHHH
Confidence 4599999999986 58999999999998 6899999999999887 79999999988776421 1111111111
Q ss_pred h----hhhccccCCCc-ccccccchhhchhhhc
Q 003541 612 D----INLRGLDGIQG-PVYVGTGCVFNRTALY 639 (811)
Q Consensus 612 d----~~~~GlDG~qg-p~y~GTgcvfRR~ALy 639 (811)
. .........++ ....|...++||++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 165 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILK 165 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHh
Confidence 1 11112222222 3346777889999995
No 34
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.12 E-value=1.9e-10 Score=117.02 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=59.0
Q ss_pred CCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEEEccCccccCCCCcccchhh---hhHHHhhhhccccCCCc
Q 003541 548 LTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANR---NTVFFDINLRGLDGIQG 623 (811)
Q Consensus 548 ltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vafVQ~PQ~F~nid~~D~y~n~---n~vFfd~~~~GlDG~qg 623 (811)
.++++||+++|+|.+ ..+++|++++-.| .|| +++.||..+...|...+-...-+ ...++-....+...++.
T Consensus 71 ~a~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 71 PDDPEFILLVDADTK-FDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred cCCCCEEEEECCCCc-CCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCc
Confidence 368999999999998 5899999999888 588 79999998877665322111101 11111111122223333
Q ss_pred -ccccccchhhchhhhcCC
Q 003541 624 -PVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 624 -p~y~GTgcvfRR~ALyG~ 641 (811)
.+..|++.+|||+||...
T Consensus 146 ~~~~~G~~~~~R~~~l~~~ 164 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGD 164 (244)
T ss_pred eEECCCceEEEEehhhcCC
Confidence 446799999999999754
No 35
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.11 E-value=1.4e-09 Score=127.93 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=73.2
Q ss_pred ccchhhhHHHHHhc---ccCCCCCE--EEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCcc-ccCCCCc---cc
Q 003541 532 HKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---DR 602 (811)
Q Consensus 532 h~KAGALNalLrvS---avltngpf--IlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~-F~nid~~---D~ 602 (811)
..||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-|+++. --+||.|=. ..|...+ -.
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~-----~~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR-----KDLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC-----cceeeeeeccCCCccccHHHHH
Confidence 47999999999853 11224455 999999997 79999975 4666643 137998721 2222111 23
Q ss_pred chhhhhHHHhhhhccccCCCccc-ccccchhhchhhhc
Q 003541 603 YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (811)
Q Consensus 603 y~n~n~vFfd~~~~GlDG~qgp~-y~GTgcvfRR~ALy 639 (811)
|..+....|...++++..++|++ ..|||++|||.||.
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~ 250 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL 250 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH
Confidence 67778888898999999999877 58899999999974
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.10 E-value=2.3e-09 Score=116.85 Aligned_cols=136 Identities=23% Similarity=0.194 Sum_probs=94.2
Q ss_pred CCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCC
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepR 424 (811)
+...|.|.|+||++| |. ..+..++-|+++.+||. .+.|+|.|||.++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 356899999999999 76 67899999999999995 589999999999844332211
Q ss_pred CchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~ 504 (811)
+.++ +|
T Consensus 91 -----------------------------------------~~~~------------------------~~--------- 96 (384)
T TIGR03469 91 -----------------------------------------AARA------------------------YG--------- 96 (384)
T ss_pred -----------------------------------------HHHh------------------------cC---------
Confidence 0000 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCC-CCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCc
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT-NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 583 (811)
Q Consensus 505 ~G~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavlt-ngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~ 583 (811)
.-+++.++..+..| ..-..|+.|+|.+++.+.... .+++|+.+|+|.. ..|++|++++-.+.++
T Consensus 97 ---------~~~~i~vi~~~~~~-~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 97 ---------RGDRLTVVSGQPLP-PGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ---------CCCcEEEecCCCCC-CCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 00124444433322 134578899999999753222 2899999999998 6899999999998775
Q ss_pred ceEEEccCccc
Q 003541 584 HVCYVQFPQRF 594 (811)
Q Consensus 584 ~vafVQ~PQ~F 594 (811)
++++|...-++
T Consensus 162 ~~~~vs~~~~~ 172 (384)
T TIGR03469 162 GLDLVSLMVRL 172 (384)
T ss_pred CCCEEEecccc
Confidence 34555544333
No 37
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.01 E-value=2.6e-09 Score=102.50 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=63.2
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEEEccCccccCCCCcccchhhhhHH
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF 610 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vF 610 (811)
+.+++|+|.++.. ++++||+++|+|-+ ..|+.|.+.+-++ .++ ..+++.....+.+.+..- ........
T Consensus 65 ~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 134 (214)
T cd04196 65 LGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVDENGNP-IGESFFEY 134 (214)
T ss_pred ccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEECCCCCC-cccccccc
Confidence 3589999999885 68999999999997 5799999999984 454 567788876654332210 00000000
Q ss_pred Hhh--hhccccCCCcccccccchhhchhhhcCC
Q 003541 611 FDI--NLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 611 fd~--~~~GlDG~qgp~y~GTgcvfRR~ALyG~ 641 (811)
... ......-.....+.|+++++||+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 167 (214)
T cd04196 135 QKIKPGTSFNNLLFQNVVTGCTMAFNRELLELA 167 (214)
T ss_pred cccCCccCHHHHHHhCccCCceeeEEHHHHHhh
Confidence 000 0011111223456789999999999654
No 38
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.01 E-value=4.7e-09 Score=100.67 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=104.4
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchh
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~ 428 (811)
|.|.|+|||+| |....+.+|+.|+++..|| .+.|+|+|||..+-|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 67999999998 7667889999999999998 478999999987622221111
Q ss_pred hhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~ 508 (811)
. +..+
T Consensus 52 --------------------------~----------~~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------K----------YAAQ--------------------------------------- 56 (202)
T ss_pred --------------------------H----------HHhc---------------------------------------
Confidence 0 0000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEE
Q 003541 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (811)
Q Consensus 509 d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vaf 587 (811)
.+++.++..+. ...++.|+|.+++. +.++||+++|+|.+ ..+++|.+++-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 01244444443 23578999999996 57899999999997 6899999999988 666 5677
Q ss_pred EccCccccCCCCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 588 VQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 588 VQ~PQ~F~nid~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
|++...+...+.. .+.. .+.... ..+......+.|.+.++||+++.
T Consensus 117 v~~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 162 (202)
T cd04184 117 IYSDEDKIDEGGK-RSEP----FFKPDW-SPDLLLSQNYIGHLLVYRRSLVR 162 (202)
T ss_pred EEccHHhccCCCC-Eecc----ccCCCC-CHHHhhhcCCccceEeEEHHHHH
Confidence 7776654332111 1100 000000 00111222355677789999995
No 39
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.97 E-value=9.7e-09 Score=98.69 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc-CCCCCcceEEEccCccccC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDG 596 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~~vafVQ~PQ~F~n 596 (811)
+.|+.+++. ..+++|+|.+++. +.++||++||+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 556666543 3579999999995 68999999999998 67999999999885 45 6788888766554
Q ss_pred CCCcccc----hhhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 597 IDRNDRY----ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 597 id~~D~y----~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
.+..... .....-++.... ....+.|.+.++||+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~rr~~~~ 163 (201)
T cd04195 123 SDGNDIGKRRLPTSHDDILKFAR------RRSPFNHPTVMFRKSKVL 163 (201)
T ss_pred CCCCeeccccCCCCHHHHHHHhc------cCCCCCChHHhhhHHHHH
Confidence 4332111 111111222211 122345677899999985
No 40
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=98.97 E-value=2.9e-10 Score=92.38 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899987 8999999999 999999999999999889999999999996
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.97 E-value=6.4e-10 Score=100.59 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=76.3
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.|+.+++ +. .+++|+|.+++. +.++||+.+|+|.++ .+++|.+.+-++.+. +..+.+...+....+.
T Consensus 55 i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~ 122 (169)
T PF00535_consen 55 IRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKN--PPDVVIGSVIYIDDDN 122 (169)
T ss_dssp EEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHC--TTEEEEEEEEEEECTT
T ss_pred cccccccc----cc-cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhC--CCcEEEEEEEEecCCc
Confidence 88888885 23 799999999996 688899999999985 677999999999874 1244444444444433
Q ss_pred CCcccch--hhhhHHHhhhhccccCCCcccccccchhhchhhhc
Q 003541 598 DRNDRYA--NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 598 d~~D~y~--n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
....... .....++.............+++|.++++||++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 123 RYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp ETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred cccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 3222211 12234455556666777789999999999999984
No 42
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.96 E-value=9.5e-09 Score=92.44 Aligned_cols=108 Identities=30% Similarity=0.370 Sum_probs=65.5
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhh-hhcCCCCCcceEEEccCccccC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFDG 596 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amc-fflDp~~g~~vafVQ~PQ~F~n 596 (811)
++|+..++. ..|+.|+|.+++. +++++|+++|+|.++ .+++|.+.+. ++.++ +++.|...+...+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 445555543 3599999999996 489999999999984 7999999954 45555 5666655544433
Q ss_pred CCCc--ccc-hhhhhHHHhhhhccccCCC-cccccccchhhchhhhc
Q 003541 597 IDRN--DRY-ANRNTVFFDINLRGLDGIQ-GPVYVGTGCVFNRTALY 639 (811)
Q Consensus 597 id~~--D~y-~n~n~vFfd~~~~GlDG~q-gp~y~GTgcvfRR~ALy 639 (811)
...+ ..+ .......+.....+..... -..+.|++.++||++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 121 GSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred CcCcceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 3211 110 0111111111112211122 25689999999999994
No 43
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.88 E-value=2.4e-08 Score=98.17 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=86.5
Q ss_pred eeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhh
Q 003541 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (811)
Q Consensus 351 VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YF 430 (811)
|.|+|||+| |+ ..+.+|+-++++.+||..++.++|.|||.+.-|.+-+
T Consensus 2 ~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~---------------------------- 49 (249)
T cd02525 2 VSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIV---------------------------- 49 (249)
T ss_pred EEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHH----------------------------
Confidence 789999998 75 5679999999999999778999999999887221100
Q ss_pred hhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCC
Q 003541 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (811)
Q Consensus 431 s~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~ 510 (811)
+.+.+
T Consensus 50 ---------------------------------~~~~~------------------------------------------ 54 (249)
T cd02525 50 ---------------------------------QEYAA------------------------------------------ 54 (249)
T ss_pred ---------------------------------HHHHh------------------------------------------
Confidence 00100
Q ss_pred CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEcc
Q 003541 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (811)
Q Consensus 511 ~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~ 590 (811)
..|.+.++..+ ...+++|+|.+++. +++++|+++|+|.+ ..|++|.+.+-++.++ ++..|+.
T Consensus 55 ---~~~~v~~i~~~------~~~~~~a~N~g~~~----a~~d~v~~lD~D~~-~~~~~l~~~~~~~~~~----~~~~v~~ 116 (249)
T cd02525 55 ---KDPRIRLIDNP------KRIQSAGLNIGIRN----SRGDIIIRVDAHAV-YPKDYILELVEALKRT----GADNVGG 116 (249)
T ss_pred ---cCCeEEEEeCC------CCCchHHHHHHHHH----hCCCEEEEECCCcc-CCHHHHHHHHHHHhcC----CCCEEec
Confidence 01235566543 12578999999996 58999999999997 6899999999888776 4555655
Q ss_pred Cc
Q 003541 591 PQ 592 (811)
Q Consensus 591 PQ 592 (811)
+-
T Consensus 117 ~~ 118 (249)
T cd02525 117 PM 118 (249)
T ss_pred ce
Confidence 53
No 44
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.81 E-value=1.2e-07 Score=95.84 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=64.1
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.++.+.+. ..|++|+|++++. +.++||+++|+|.. .+|++|.+++-.+.+. +..+|... +|...
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~-r~~~~ 134 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT-RYVKG 134 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc-cccCC
Confidence 455555432 2488999999985 68999999999998 6899999999888664 34556554 33221
Q ss_pred CCccc--c-hhhhhHHHhhhhccccCCCcccccccchhhchhhhcCC
Q 003541 598 DRNDR--Y-ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 598 d~~D~--y-~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~ 641 (811)
..... + -.....++.....-+-+.+.....|...+|||+++.-+
T Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i 181 (243)
T PLN02726 135 GGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDL 181 (243)
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHH
Confidence 11011 1 11111112222222222233344555668899998644
No 45
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.75 E-value=9.2e-08 Score=90.11 Aligned_cols=94 Identities=17% Similarity=0.041 Sum_probs=61.1
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhh-hhcCCCCCcceEEEccCccccCCCCcccchhhhhHHH
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amc-fflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFf 611 (811)
.+++|+|.+++. +.++||+++|+|-+ ..++.+.+.+- +..++ ++.+|.....+.+.+........
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~~~~~~~~~~~----- 127 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVDENGRVIGRRR----- 127 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEcCCCCcccCCC-----
Confidence 579999999995 68999999999998 46889999984 44565 56677766655443322111100
Q ss_pred hhhhccccCCCcccccccchhhchhhhcC
Q 003541 612 DINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 612 d~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
........-....+.+|++.++||+++.-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
T cd06433 128 PPPFLDKFLLYGMPICHQATFFRRSLFEK 156 (202)
T ss_pred CcchhhhHHhhcCcccCcceEEEHHHHHH
Confidence 01111112233456678888999999953
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.74 E-value=1.5e-07 Score=88.93 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=56.0
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHh
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFD 612 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd 612 (811)
.+++++|.+++. +.++||+++|+|-+ +.+++|.+.+-++ ++ .+ +|..++...+.....
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~----~~-~v~g~~~~~~~~~~~----------- 123 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP----GV-FLSGSRVLLNEKLTE----------- 123 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC----Cc-EEecceeecccccce-----------
Confidence 689999999995 68999999999997 6899999999887 44 34 344554433322111
Q ss_pred hhhccccCCCcccccccchhhchhhhc---CCCC
Q 003541 613 INLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (811)
Q Consensus 613 ~~~~GlDG~qgp~y~GTgcvfRR~ALy---G~~P 643 (811)
..+.|++++++|+++. |+++
T Consensus 124 -----------~~~~~~~~~~~r~~~~~~ggf~~ 146 (182)
T cd06420 124 -----------RGIRGCNMSFWKKDLLAVNGFDE 146 (182)
T ss_pred -----------eEeccceEEEEHHHHHHhCCCCc
Confidence 3456777888888875 5544
No 47
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.72 E-value=2e-07 Score=90.95 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=64.1
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.++..++. ..+++|+|.+++. +.+++|+++|+|.. ..|++|...+..+.++ +...|..+......
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~~ 120 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGSRYVEGG 120 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEeeeecCC
Confidence 344445543 3589999999996 57899999999997 6899999999998765 34556555333221
Q ss_pred CCcccchhh------hhHHHhhhhccccCCCcccccccchhhchhhhcCC
Q 003541 598 DRNDRYANR------NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 598 d~~D~y~n~------n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~ 641 (811)
. ...+... ..-++.... -+.+.....|+..++||++|..+
T Consensus 121 ~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i 166 (224)
T cd06442 121 G-VEGWGLKRKLISRGANLLARLL---LGRKVSDPTSGFRAYRREVLEKL 166 (224)
T ss_pred c-cCCCcHHHHHHHHHHHHHHHHH---cCCCCCCCCCccchhhHHHHHHH
Confidence 1 1111111 111111111 12233445566668999999654
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.70 E-value=1.3e-07 Score=89.30 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=67.1
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.++..+++. .|++|+|.+++. +.+++|+++|+|-. ..|++|.+.+-.+... +..+|+.+..+.+.
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~~ 121 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRGG 121 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCCC
Confidence 4455555443 399999999995 67899999999987 5899999999986654 46677777665543
Q ss_pred CCcc-cchhh-hhHHHhhhhccccCCCcccccccchhhchhhhcCC
Q 003541 598 DRND-RYANR-NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 598 d~~D-~y~n~-n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~ 641 (811)
.... .+..- ...++. ....+.+..-....|...++||++|.-+
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 122 GAGMPLLRRLGSRLFNF-LIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred cccchHHHHHHHHHHHH-HHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 2111 11111 111111 1111122223334455568999999654
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.63 E-value=4.9e-07 Score=88.03 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=55.4
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHh
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFD 612 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd 612 (811)
.+++|+|.++.. ..+++|+++|.|-+ +.+++|.+.+-.+.++ ....+.....+.+.....++ +.
T Consensus 59 g~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~ 122 (221)
T cd02522 59 GRARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD----GAVAGAFRLRFDDPGPRLRL-------LE 122 (221)
T ss_pred CHHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC----CcEEEEEEeeecCCccchhh-------hh
Confidence 378999999985 56999999999998 5799999986665544 33444444444433211111 11
Q ss_pred hhhccccCCCcccccccchhhchhhhc
Q 003541 613 INLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 613 ~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
..........+..+.+.|.++||+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (221)
T cd02522 123 LGANLRSRLFGLPYGDQGLFIRRELFE 149 (221)
T ss_pred hcccceecccCCCcCCceEEEEHHHHH
Confidence 111112222233455667888999884
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.60 E-value=4.1e-07 Score=83.33 Aligned_cols=67 Identities=19% Similarity=0.109 Sum_probs=54.4
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHH
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFf 611 (811)
..+++|+|.+++. ..+++|+++|+|.+ ..+++|.+.+-.+.+. .++++|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~---~~~~~~~~~-------------------- 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQD---PDVGIVGPK-------------------- 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhC---CCceEEEcc--------------------
Confidence 3589999999996 48999999999998 5789999999865432 267777665
Q ss_pred hhhhccccCCCcccccccchhhchhhhcC
Q 003541 612 DINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 612 d~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
+.|.+.++||+++..
T Consensus 112 --------------~~~~~~~~~~~~~~~ 126 (166)
T cd04186 112 --------------VSGAFLLVRREVFEE 126 (166)
T ss_pred --------------CceeeEeeeHHHHHH
Confidence 788999999999853
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.54 E-value=1.2e-06 Score=83.58 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=63.6
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.|+..++ ...|++|+|.+++. +.+++|+.+|+|.. ..+++|.+.+-.+ ++ +.++.+..... .+.
T Consensus 57 i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~-~~--~~~~v~g~~~~--~~~ 121 (181)
T cd04187 57 VKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAKW-EE--GYDVVYGVRKN--RKE 121 (181)
T ss_pred EEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHHH-hC--CCcEEEEEecC--Ccc
Confidence 55555543 23589999999996 57899999999997 5899999999874 43 22444433222 211
Q ss_pred CCcccchhhhhHHHhhhhccccCCCcccccccchhhchhhhcC
Q 003541 598 DRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 598 d~~D~y~n~n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
....++.+ ..|+. ......+..-+...|+..++||+++..
T Consensus 122 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (181)
T cd04187 122 SWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVDA 161 (181)
T ss_pred hHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHHH
Confidence 00111111 12211 122223444566778888999999954
No 52
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.52 E-value=9.5e-07 Score=92.20 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=82.4
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhh
Q 003541 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (811)
Q Consensus 353 VFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~ 432 (811)
|+|||+| |++..+.+||.|+++..||.....|+|.|||.++-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 8999999 877999999999999999865679999999998743332211
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCC
Q 003541 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (811)
Q Consensus 433 k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~~d~~g 512 (811)
. ...
T Consensus 51 -------------------------~-------~~~-------------------------------------------- 54 (299)
T cd02510 51 -------------------------E-------YYK-------------------------------------------- 54 (299)
T ss_pred -------------------------H-------HHh--------------------------------------------
Confidence 0 000
Q ss_pred CCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC
Q 003541 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (811)
Q Consensus 513 ~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD 578 (811)
...|.+.++..++. ..++.|.|.+++. +.|+||+.||+|.++ .+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~~-~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCEV-NVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCccc-CccHHHHHHHHHHh
Confidence 01133666655532 3588899999996 689999999999984 89999999998853
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.49 E-value=1.5e-06 Score=84.11 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=53.0
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHh
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFD 612 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd 612 (811)
..+.++|.++... +...+++|+++|+|.+ ..+++|++++-.+.++ +++.| +|.++....
T Consensus 63 g~~~~~n~~~~~a-~~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~~~~~-------------- 121 (202)
T cd04185 63 GGAGGFYEGVRRA-YELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVLDPDG-------------- 121 (202)
T ss_pred chhhHHHHHHHHH-hccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeEcCCC--------------
Confidence 4678888888753 2457899999999998 5799999999988866 46655 344443211
Q ss_pred hhhccccCCCcccccccchhhchhhhc
Q 003541 613 INLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 613 ~~~~GlDG~qgp~y~GTgcvfRR~ALy 639 (811)
.++|.++||++|.
T Consensus 122 --------------~~~~~~~~~~~~~ 134 (202)
T cd04185 122 --------------SFVGVLISRRVVE 134 (202)
T ss_pred --------------ceEEEEEeHHHHH
Confidence 4567789999985
No 54
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.44 E-value=2.2e-06 Score=84.06 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=42.0
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccc
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F 594 (811)
.|++|+|.+++. +.+++|+.+|+|-. ..+++|.+.+-.+.+. ...+|.....+
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~~ 121 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRAH 121 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeec
Confidence 489999999996 67899999999998 6899999999987654 23455555443
No 55
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.40 E-value=1.2e-05 Score=87.15 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.5
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD 578 (811)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 599999999996 57999999999997 678898888887754
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.38 E-value=4e-06 Score=82.72 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003541 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (811)
Q Consensus 353 VFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf 399 (811)
|+||||| + ...+..|+-|+++..|| +.+.++|.|||..+-|.
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~ 42 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKSA 42 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHH
Confidence 6899998 5 47999999999999998 46899999999987443
No 57
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.31 E-value=3.1e-06 Score=83.56 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHh---hhh-cCCCCCcceEEEccCcc
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM---CFM-MDPNLGKHVCYVQFPQR 593 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~am---cff-lDp~~g~~vafVQ~PQ~ 593 (811)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+ .++ .++.+ .|+.
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 5566665432 499999999996321 15699999999998 5799999995 222 233 45554 4554
Q ss_pred ccCCCCcccchhhhhH-HHhhhhccccCC-Ccccccccchhhchhhhc
Q 003541 594 FDGIDRNDRYANRNTV-FFDINLRGLDGI-QGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 594 F~nid~~D~y~n~n~v-Ffd~~~~GlDG~-qgp~y~GTgcvfRR~ALy 639 (811)
.........+..+... ++.......... ......|+|+++||+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 164 (237)
T cd02526 117 IDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALE 164 (237)
T ss_pred EcCCCCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHH
Confidence 4322211111111000 000011111222 234567899999999884
No 58
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.30 E-value=5.4e-06 Score=89.38 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=39.7
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~l 397 (811)
..|.|.|+||+|| ++ ..+..++.|+++..|+ .+.|+|.|||.++-
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~ 48 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDN 48 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCcc
Confidence 3588999999998 54 6889999999999997 58999999999874
No 59
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.28 E-value=1.1e-05 Score=86.57 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=41.8
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc-CCCCCcceEEEcc
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 590 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~~vafVQ~ 590 (811)
.|++|+|.++.. +.+++|+.+|+|-...+|++|.+.+-.|. +| ++++|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 699999999985 68999999999996458999999998775 77 5667764
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.25 E-value=1.2e-05 Score=85.46 Aligned_cols=110 Identities=17% Similarity=0.348 Sum_probs=81.6
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCc
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaP 426 (811)
..|.|.|+||||| ++. .+..||.|+++..|| .+.++|.|||.+. .+.+.+ +++ +
T Consensus 3 ~~p~VSVIip~yN---~~~-~l~~~l~Svl~Qt~~--~~EiIVVDDgS~~--~~~~~~---~~~-------~-------- 56 (279)
T PRK10018 3 DNPLISIYMPTWN---RQQ-LAIRAIKSVLRQDYS--NWEMIIVDDCSTS--WEQLQQ---YVT-------A-------- 56 (279)
T ss_pred CCCEEEEEEEeCC---CHH-HHHHHHHHHHhCCCC--CeEEEEEECCCCC--HHHHHH---HHH-------H--------
Confidence 4689999999998 764 457999999999998 4899999999873 221111 110 0
Q ss_pred hhhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 003541 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (811)
Q Consensus 427 e~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G 506 (811)
+
T Consensus 57 ---------------------------------------~---------------------------------------- 57 (279)
T PRK10018 57 ---------------------------------------L---------------------------------------- 57 (279)
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC
Q 003541 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (811)
Q Consensus 507 ~~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD 578 (811)
.-|++.|+..++. ..++.|+|.++.. +.|+||+.+|+|-+. .|+.|.+.+-++..
T Consensus 58 -------~~~ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 58 -------NDPRITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred -------CCCCEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 0134777766543 3588999999985 789999999999985 68999988887643
No 61
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.09 E-value=4.6e-05 Score=67.05 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=41.3
Q ss_pred cccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhh-hhcCCCCCcceEEEccC
Q 003541 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 591 (811)
Q Consensus 531 hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amc-fflDp~~g~~vafVQ~P 591 (811)
+..+++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+++
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 44799999999986 47999999999998 57888888744 44554 67788877
No 62
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=0.00061 Score=78.40 Aligned_cols=113 Identities=24% Similarity=0.343 Sum_probs=83.7
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEEEccCccccC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDG 596 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vafVQ~PQ~F~n 596 (811)
+.|=.|. .|...||||+-...|-=| +.-.++|+||||-+ -..+.+-+.+-.| -+| +.|.+||--.--|
T Consensus 214 ifYRrRr----~n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRR----RNVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHh----hhhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 4554443 367789999999999644 45689999999998 5789999999988 578 7999999665554
Q ss_pred CCCcccchhh----hhHHHhhhhccccCCCc--ccccccchhhchhhh---cCCCC
Q 003541 597 IDRNDRYANR----NTVFFDINLRGLDGIQG--PVYVGTGCVFNRTAL---YGYEP 643 (811)
Q Consensus 597 id~~D~y~n~----n~vFfd~~~~GlDG~qg--p~y~GTgcvfRR~AL---yG~~P 643 (811)
.+- .|+-- .+|+=-+...|+.-||+ .-|=|-|+++|-+|. .|+.|
T Consensus 283 g~T--L~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 283 GDT--LYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred cch--HHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCC
Confidence 432 23321 23333456778888887 469999999999998 57655
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.72 E-value=0.00028 Score=73.32 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=37.1
Q ss_pred CceeEEEeCCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhHH
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTFE 400 (811)
Q Consensus 349 P~VDVFV~T~dP~kEPp~vt~nTVlS~lal-DYP~dKl~~YVsDDG~s~lTf~ 400 (811)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 57899999998 64 5789999999864 3333478999999999984433
No 64
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.69 E-value=0.00038 Score=71.95 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=65.9
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCC
Q 003541 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (811)
Q Consensus 518 LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~ni 597 (811)
+.|+.-++.- ..|||+|.+++.. .-.+++||+.||.|-+ +.+++|.+.+.++... +.+++.|. |..++.
T Consensus 47 i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~~- 115 (281)
T TIGR01556 47 IALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFDR- 115 (281)
T ss_pred eEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEcC-
Confidence 6666654322 5899999999863 1237899999999998 5689999999888542 22677776 444332
Q ss_pred CCcccchh--hhhHHHhh-hhccccC-CCcccccccchhhchhhhc
Q 003541 598 DRNDRYAN--RNTVFFDI-NLRGLDG-IQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 598 d~~D~y~n--~n~vFfd~-~~~GlDG-~qgp~y~GTgcvfRR~ALy 639 (811)
+....++. ....++.. ....... ....+..++|+++||+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~ 161 (281)
T TIGR01556 116 GTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQ 161 (281)
T ss_pred CCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHH
Confidence 22222211 01111100 0011111 1223557889999999994
No 65
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.65 E-value=4.9e-05 Score=73.65 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=61.0
Q ss_pred EEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhhhHHHhhh----hccccCCCc-cccc
Q 003541 553 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDIN----LRGLDGIQG-PVYV 627 (811)
Q Consensus 553 fIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vFfd~~----~~GlDG~qg-p~y~ 627 (811)
+|+++|+|.. +.+++|++++.+|.+| ++++||+|+.+++ ......+.+.++|... ....+..+. .+..
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999998 5799999999999888 8999999999963 3455666666666421 122233433 4578
Q ss_pred ccchhhchhhhc
Q 003541 628 GTGCVFNRTALY 639 (811)
Q Consensus 628 GTgcvfRR~ALy 639 (811)
|+|.++||+||.
T Consensus 74 G~~~~~r~~~l~ 85 (193)
T PF13632_consen 74 GSGMLFRREALR 85 (193)
T ss_pred CcceeeeHHHHH
Confidence 999999999994
No 66
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.51 E-value=0.0013 Score=69.41 Aligned_cols=107 Identities=11% Similarity=0.187 Sum_probs=67.9
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhhh----
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRN---- 607 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n---- 607 (811)
-.+|.|.|.++.. +++++|+++|+|++ +.|++|.+++-++..=. ....+++-.|..|.+.+....+-...
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~ 147 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGSEKFYSQFKNLW 147 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhhHHHhhcchhcc
Confidence 3789999999985 69999999999998 57999999999322110 11346777777776655433322221
Q ss_pred --hHHHhhhhccccCCCcccccccchhhchhhh---cCCCCC
Q 003541 608 --TVFFDINLRGLDGIQGPVYVGTGCVFNRTAL---YGYEPP 644 (811)
Q Consensus 608 --~vFfd~~~~GlDG~qgp~y~GTgcvfRR~AL---yG~~Pp 644 (811)
.++-+.......-+.....+|+..++||+.+ -|+|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~ 189 (281)
T PF10111_consen 148 DHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDER 189 (281)
T ss_pred hHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCcc
Confidence 1111222212233334456777888888866 677764
No 67
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.50 E-value=0.00023 Score=70.83 Aligned_cols=98 Identities=23% Similarity=0.213 Sum_probs=72.0
Q ss_pred CcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEccCccccCCCCcccchhh-hh
Q 003541 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANR-NT 608 (811)
Q Consensus 530 ~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ~PQ~F~nid~~D~y~n~-n~ 608 (811)
.-+.|..||-++++. ....++|+++|+|+.+ +|++|++.+.-|.|| ++++|-.+.++.+.+. +... -.
T Consensus 14 g~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~---~~~~l~~ 82 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLADP----GVGLVTGLPRGVPARG---FWSRLEA 82 (175)
T ss_pred CCChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhCC----CCcEEEecccccCCcC---HHHHHHH
Confidence 467999999999985 2689999999999985 799999999999998 7999988777655442 2211 11
Q ss_pred HHH---hhhhccccCCCcccccccchhhchhhhcC
Q 003541 609 VFF---DINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (811)
Q Consensus 609 vFf---d~~~~GlDG~qgp~y~GTgcvfRR~ALyG 640 (811)
.|+ -..+... -+.++..|...++||++|.-
T Consensus 83 ~~~~~~~~~~~a~--~~~~~~~G~~m~~rr~~L~~ 115 (175)
T PF13506_consen 83 AFFNFLPGVLQAL--GGAPFAWGGSMAFRREALEE 115 (175)
T ss_pred HHHhHHHHHHHHh--cCCCceecceeeeEHHHHHH
Confidence 111 1111222 24578899999999999963
No 68
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.46 E-value=0.001 Score=72.07 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=35.3
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhc
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcffl 577 (811)
.|++|+|++++. +.|++|+.+|||.. .+|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 688999999986 68999999999998 68999999888774
No 69
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.0017 Score=57.06 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=39.9
Q ss_pred CCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003541 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (811)
Q Consensus 348 LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lT 398 (811)
.|.|.|+|||+| |+ ..+..+|.|+++..|+. ..|.|.|||.++-|
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t 46 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGT 46 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh
Confidence 578999999999 65 89999999999999996 66999999999843
No 70
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.13 E-value=0.0038 Score=63.10 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=35.7
Q ss_pred cchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCC
Q 003541 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (811)
Q Consensus 533 ~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp 579 (811)
..+.+.|.++.. ..+++|+++|+|-. ..++.+.+.+-++.+.
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 478899999985 67899999999998 5789999999888654
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.33 E-value=0.05 Score=60.28 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=58.0
Q ss_pred cccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHH---HHHHhhhh-cCCCCCcceEEEccCccccCCCCcccchhh
Q 003541 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKA---LREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANR 606 (811)
Q Consensus 531 hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~---Lr~amcff-lDp~~g~~vafVQ~PQ~F~nid~~D~y~n~ 606 (811)
.|+|+ |+|.++.. .+++++++||-|.. +.|+| +.++++++ .|+ +|..|-.= |-.-.....+.
T Consensus 83 ~hyk~-aln~vF~~----~~~~~vIILEDDl~-~sPdFf~yf~~~l~~y~~D~----~v~~ISa~----NdnG~~~~~~~ 148 (334)
T cd02514 83 RHYKW-ALTQTFNL----FGYSFVIILEDDLD-IAPDFFSYFQATLPLLEEDP----SLWCISAW----NDNGKEHFVDD 148 (334)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEEECCCCc-cCHhHHHHHHHHHHHHhcCC----CEEEEEee----ccCCcccccCC
Confidence 45555 78888864 47999999999997 68995 58999977 566 67777652 10000000000
Q ss_pred -hhHHHhhhhccccCCCcccccccchhhchhhhcCCCC
Q 003541 607 -NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEP 643 (811)
Q Consensus 607 -n~vFfd~~~~GlDG~qgp~y~GTgcvfRR~ALyG~~P 643 (811)
...+ ...-++.|.|-+.+|++...++|
T Consensus 149 ~~~~l----------yrs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 149 TPSLL----------YRTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred CcceE----------EEecCCCchHHHHHHHHHHHhCC
Confidence 1111 12457889999999999877766
No 72
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.25 E-value=0.051 Score=57.90 Aligned_cols=123 Identities=24% Similarity=0.290 Sum_probs=86.4
Q ss_pred CCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCch
Q 003541 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (811)
Q Consensus 348 LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe 427 (811)
-|.|-+.|.||+ +...+.+++-++.+..||.+ .+++.|+|..+.|.+.+.+..
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~~--------------------- 54 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKARF--------------------- 54 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhhc---------------------
Confidence 367889999997 67899999999999999975 344788888874443222100
Q ss_pred hhhhhccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCC
Q 003541 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (811)
Q Consensus 428 ~YFs~k~d~~~~k~~pef~~err~mKreYEe~k~RIe~L~~~~~~~~~~gw~m~dgt~wpg~~~rdHp~iIqV~l~~~G~ 507 (811)
T Consensus 55 -------------------------------------------------------------------------------- 54 (305)
T COG1216 55 -------------------------------------------------------------------------------- 54 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCC-EEEEecCCCCCCcHHHHHHHhhhhc-CCCCCcce
Q 003541 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFMM-DPNLGKHV 585 (811)
Q Consensus 508 ~d~~g~~lP~LvYVSReKrPg~~hh~KAGALNalLrvSavltngp-fIlnlDcDhyinnp~~Lr~amcffl-Dp~~g~~v 585 (811)
.|.+.|+.-.+.-| =||+.|.+++.. +.++. ++++|+-|.+ ..+++|.+.+-.+. ++ .+
T Consensus 55 -------~~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~ 115 (305)
T COG1216 55 -------FPNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AA 115 (305)
T ss_pred -------CCcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CC
Confidence 12355555443333 378888877753 34443 9999999965 78999999998874 44 67
Q ss_pred EEEccCccccC
Q 003541 586 CYVQFPQRFDG 596 (811)
Q Consensus 586 afVQ~PQ~F~n 596 (811)
+.|+.-.+.++
T Consensus 116 ~~~~~~i~~~~ 126 (305)
T COG1216 116 GVVGPLIRNYD 126 (305)
T ss_pred eEeeeeEecCC
Confidence 77777666544
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.81 E-value=0.004 Score=68.52 Aligned_cols=48 Identities=31% Similarity=0.925 Sum_probs=43.3
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~y 69 (811)
.|..|=+.+.++. .-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mditd--knf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDITD--KNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCccccccccccc--CCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 5999999977764 359999 99999999999999999999999999999
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=0.018 Score=63.15 Aligned_cols=55 Identities=27% Similarity=0.602 Sum_probs=49.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
..+.|.+|-.+..++.+=.+++. +|+-.+|+.|.+--...|...||+|++..++.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 45799999999999999888888 99999999999887788999999999999865
No 75
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.19 E-value=0.035 Score=46.90 Aligned_cols=46 Identities=35% Similarity=0.889 Sum_probs=36.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCC--Ccccc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 69 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~Cpq--CKt~y 69 (811)
.+..|.+||+.+- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.|
T Consensus 4 ~~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 3568999999874 47889999999999999999765 34544 66665
No 76
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=89.57 E-value=5.8 Score=46.97 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=35.9
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG 393 (811)
.++.+=.+||+|+ |...-+..|+-|+...+||..+--+.|.=||
T Consensus 23 ~~~~~i~~v~cy~---E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG 66 (527)
T PF03142_consen 23 PDKFVICLVPCYS---EGEEELRTTLDSLATTDYDDSRKLIFVICDG 66 (527)
T ss_pred CCceEEEEEcccc---CChHHHHHHHHHHHhcCCCCcccEEEEEcCc
Confidence 4667778999998 9999999999999999999964445554454
No 77
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.18 E-value=0.4 Score=35.66 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=33.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ 68 (811)
.|.||.+.+ .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22222 335899999999987666678899999875
No 78
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=88.77 E-value=2.1 Score=45.06 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=35.8
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC
Q 003541 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (811)
Q Consensus 516 P~LvYVSReKrPg~~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD 578 (811)
+++.-..|.+.-|-. -|.-+.+.+ ..|+||++.|||.- .+|+++-+.+-..-+
T Consensus 63 d~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 63 DNILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred CcEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 346677787644421 133344554 68999999999996 789988877665544
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.22 E-value=0.37 Score=47.54 Aligned_cols=51 Identities=29% Similarity=0.765 Sum_probs=38.0
Q ss_pred ccccccCCCcccCCCCCceeecCC-CCCCcchhhhHhHhh--cCCCcCCCCccccccc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDV-CAFPVCRPCYEYERK--DGNQSCPQCKTRYKKH 72 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~e-C~FPVCRpCYEyer~--eG~~~CpqCKt~ykr~ 72 (811)
--|.||.|. ..-+-|..=|| |||.||-.||--=.| .-.-+||-|||-||..
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 369999874 12334655555 599999999976666 5568999999999865
No 80
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=79.17 E-value=2.1 Score=35.15 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 22 333 368999999999877766 678999998873
No 81
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.47 E-value=1.3 Score=53.45 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=21.4
Q ss_pred cCCCCCC----cchhhhHhHhhcCCCcCCCCcccccc
Q 003541 39 CDVCAFP----VCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 39 C~eC~FP----VCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
|.+||-+ .|.-|- .+...|..-||+|+++-..
T Consensus 18 C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 18 CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred ccccCCCCCCCcCCCCC-CCCCcccccccccCCcccc
Confidence 5555443 355554 4567888999999998653
No 82
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=77.11 E-value=40 Score=37.71 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=38.6
Q ss_pred ceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhC
Q 003541 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV---DKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420 (811)
Q Consensus 350 ~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~---dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~ 420 (811)
..-|+||.||=.+-=+.+.-.||-. |.-.|-. =...+.|+|||..+-|.+ .| +-||+|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~-------~a---~k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVE-------VA---LKFSRKLG 130 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHH-------HH---HHHHHHcC
Confidence 6789999999222224555555544 3334443 367899999999985544 33 24777775
No 83
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=73.29 E-value=0.88 Score=39.28 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=22.2
Q ss_pred hhhhHhHhhcCCCcCCCCcccccccC
Q 003541 48 RPCYEYERKDGNQSCPQCKTRYKKHK 73 (811)
Q Consensus 48 RpCYEyer~eG~~~CpqCKt~ykr~k 73 (811)
+-|+|++..||.-.||+|+..|--..
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 56888999999999999999996543
No 84
>PHA02929 N1R/p28-like protein; Provisional
Probab=72.23 E-value=4.5 Score=43.39 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.5
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 15 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
.....|.||.+.+..++ ....|..=..|+=.-|+.|.. +..+.++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 45679999999876443 111233344789999999995 44556789999999875
No 85
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.56 E-value=13 Score=42.89 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (811)
Q Consensus 345 ~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG 393 (811)
+.+||++.|+|--.| |--..+++||-|++.-.=|.=--.|.+.||=
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 578999999999999 9999999999999875543323356677773
No 86
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=70.76 E-value=5.9 Score=41.45 Aligned_cols=63 Identities=32% Similarity=0.656 Sum_probs=40.9
Q ss_pred CCCCCCCCCcc-ccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHh---------------hcCCCcCCC
Q 003541 1 MESEGETGVKS-IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQ 64 (811)
Q Consensus 1 ~~~~~~~~~k~-~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer---------------~eG~~~Cpq 64 (811)
|+-+-++..+. +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 45554444433 44445569999998752 2333 2689999999996321 113468999
Q ss_pred Cccccc
Q 003541 65 CKTRYK 70 (811)
Q Consensus 65 CKt~yk 70 (811)
|++...
T Consensus 74 CR~~Is 79 (193)
T PLN03208 74 CKSDVS 79 (193)
T ss_pred CCCcCC
Confidence 999884
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.61 E-value=2.7 Score=34.10 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~FPV 46 (811)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=70.61 E-value=3.1 Score=32.57 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.4
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCK 66 (811)
.|.||-+++.. ++..+... |+=-.|+.|..--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777775 9999999998655444 57999995
No 89
>PHA02862 5L protein; Provisional
Probab=70.53 E-value=3.1 Score=41.88 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=32.0
Q ss_pred CccccccCCCcccCCCCCceeecCCC---CCCcchhhhHhH-hhcCCCcCCCCcccccc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEYE-RKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~FPVCRpCYEye-r~eG~~~CpqCKt~ykr 71 (811)
+.+|.||-+. +++..-+| .| .==|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999876 23445777 44 112335665332 44788999999999963
No 90
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.75 E-value=3.6 Score=45.31 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=43.7
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
+-|.+|--++-++.+ ++.-=|+|+.+.|-.|..-=-.-|...||.|.+..+.-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888888766 66666799999999999766778999999999988643
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.69 E-value=2.2 Score=36.51 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=33.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
.-|.|-.|+..-.. ..+.+ |+--||+-|+.-||-.| ||=|.+|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667665221 12344 59999999999999888 99999999653
No 92
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=67.59 E-value=4 Score=31.27 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=18.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPV 46 (811)
+|.-||.++.+... + -|.|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68999999997653 3 37999999875
No 93
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=67.33 E-value=1.3 Score=42.19 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=35.8
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHhhcCCCcCCCC
Q 003541 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (811)
Q Consensus 15 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqC 65 (811)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++--.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999987764 35 88999999999999988555665566555
No 94
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.77 E-value=4.1 Score=43.53 Aligned_cols=46 Identities=33% Similarity=0.804 Sum_probs=36.8
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH---hhcCCCcCCCCccccc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRYK 70 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEye---r~eG~~~CpqCKt~yk 70 (811)
---|.||=|.. =|+.|-| ||---|.||. |- ....++.||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34799996653 4578888 9999999998 65 5688899999998763
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.85 E-value=6.6 Score=27.92 Aligned_cols=39 Identities=38% Similarity=0.894 Sum_probs=27.2
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCC
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqC 65 (811)
|.||.+. .....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 112222 25888899999976666677889987
No 96
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=62.11 E-value=6.4 Score=40.18 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=34.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCC---CcchhhhHhHh-hcCCCcCCCCccccccc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYER-KDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---PVCRpCYEyer-~eG~~~CpqCKt~ykr~ 72 (811)
.+..|.||-++ +++..-+| .|.= -|=+.|-+-=. .-++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45699999766 23345678 5532 23467876543 45789999999999754
No 97
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=60.77 E-value=28 Score=36.27 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=36.3
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCC
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPN 580 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~ 580 (811)
..-|-+.|.+++. +.++|++.+.=|-.+.+.+++.+++-.| .||+
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 4567799999995 7999999999999999999999999999 8883
No 98
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.16 E-value=7.2 Score=43.64 Aligned_cols=63 Identities=32% Similarity=0.778 Sum_probs=46.3
Q ss_pred ccccCCccccc--cCCCcccCCCCCceeecCC-CCCCcchhhhH-----------------------hH-----------
Q 003541 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YE----------- 54 (811)
Q Consensus 12 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~FPVCRpCYE-----------------------ye----------- 54 (811)
+.+++|-.|.- ||..+-...| .--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45677889986 9987665542 23588877 99999999998 23
Q ss_pred ----hhcCCCcCCCCcccccccCCC
Q 003541 55 ----RKDGNQSCPQCKTRYKKHKGS 75 (811)
Q Consensus 55 ----r~eG~~~CpqCKt~ykr~kg~ 75 (811)
+|-.++-||.|.++-.|--|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 234567799998888776665
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=6.2 Score=44.04 Aligned_cols=44 Identities=34% Similarity=0.844 Sum_probs=37.3
Q ss_pred cCCCCCceeecCCCCCCc--------ch--hhhHhHhhcCCCcCCCCccccccc
Q 003541 29 KTVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 29 ~~~~G~~fvaC~eC~FPV--------CR--pCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
-..+|...--|..|+||| |+ .|||-+|.|-.+.||.|-.+-.|.
T Consensus 83 ek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 83 EKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred ccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHH
Confidence 345677677899999998 54 699999999999999999999876
No 101
>PRK00420 hypothetical protein; Validated
Probab=58.62 E-value=4.5 Score=38.96 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.1
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCcCCCCcccccc
Q 003541 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 37 vaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
-.|..|++|.= +.++|.-.||.|++.+..
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888863 338999999999998864
No 102
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=57.45 E-value=8.4 Score=43.17 Aligned_cols=52 Identities=29% Similarity=0.860 Sum_probs=43.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
...|.||++.. +.+-..|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4555579999 99999999998 44568999999999999753
No 103
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=54.30 E-value=4.2e+02 Score=31.09 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=63.3
Q ss_pred CcccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEE-ccCccccCCCCcccchhhhh
Q 003541 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNT 608 (811)
Q Consensus 530 ~hh~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafV-Q~PQ~F~nid~~D~y~n~n~ 608 (811)
.-+.|--||=-+.|. ..-|+|++.|.|-. -.|+.+....-=|+.++ +.|+| |+|-.++-.. .|. +-++
T Consensus 154 g~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G-f~a-tle~- 222 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG-FDA-TLEQ- 222 (431)
T ss_pred ccChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-chh-hhhh-
Confidence 455677777667774 57789999999988 48999999888888764 78888 7776553221 221 1111
Q ss_pred HHHhhhhcc----ccCCCcccccccchhhchhhhc
Q 003541 609 VFFDINLRG----LDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 609 vFfd~~~~G----lDG~qgp~y~GTgcvfRR~ALy 639 (811)
+||....+- -+-.+--.+.|-.|+.|++||.
T Consensus 223 ~~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~ld 257 (431)
T KOG2547|consen 223 VYFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEALD 257 (431)
T ss_pred eeeccCCceEEEccccccccccccHHHHHHHHHHH
Confidence 344322211 0112223456778999999995
No 104
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=53.90 E-value=7.2 Score=32.58 Aligned_cols=28 Identities=25% Similarity=0.758 Sum_probs=17.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYE 52 (811)
.|.|||.++|+... .-+. =+| ||..|+.
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999998653 1111 123 6777773
No 105
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=53.89 E-value=9.7 Score=29.04 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.0
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhh-cCCCcCCCC
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~-eG~~~CpqC 65 (811)
|.||.+...... -=..|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887643322 2347899999999987766 788899988
No 106
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=53.75 E-value=13 Score=29.68 Aligned_cols=38 Identities=26% Similarity=0.836 Sum_probs=28.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHhhcC
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC-~FPVCRpCYEyer~eG 58 (811)
....|.+|+..| .|.-| .|.+| .|-+|..||..-+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999854 36555 79999 9999999997554443
No 107
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=52.24 E-value=9.5 Score=30.59 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=17.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPV 46 (811)
.|+-||..+..++... -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777777665544 35666666554
No 108
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=51.39 E-value=14 Score=28.30 Aligned_cols=39 Identities=36% Similarity=0.911 Sum_probs=27.3
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCC
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqC 65 (811)
|.||-+...- +++. ..||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~-~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVV-TPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEE-CTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEE-CCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 4333 378999999999777666 7999987
No 109
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=51.13 E-value=16 Score=29.45 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHhhcCCCcCCCCcccccc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~FP-VCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
..|.||.+..-. -.|. .|+=- +|..|++--++ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999987321 2344 45777 99999976666 77999999998753
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.03 E-value=12 Score=31.91 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=24.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchh
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRp 49 (811)
.+|+|..||..+..+..+..|+ |..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6889999999887755666554 87888876554
No 111
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=48.89 E-value=14 Score=29.60 Aligned_cols=31 Identities=32% Similarity=0.771 Sum_probs=25.3
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhH
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYE 54 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~-FPVCRpCYEye 54 (811)
.|.+|+..|. | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCcC
Confidence 5899998542 4 789999997 99999999643
No 112
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=47.87 E-value=15 Score=42.41 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.3
Q ss_pred CceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 34 ~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
+..++|++|+.-+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999964 23445899999988655
No 113
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.48 E-value=13 Score=47.06 Aligned_cols=45 Identities=22% Similarity=0.710 Sum_probs=32.1
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCC-----cchhhhHhHhhc-CCCcCCCCccccc
Q 003541 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFP-----VCRPCYEYERKD-GNQSCPQCKTRYK 70 (811)
Q Consensus 15 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FP-----VCRpCYEyer~e-G~~~CpqCKt~yk 70 (811)
.....|.-||... ....|.+|+=. .|..| ++. +.-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556899999883 55789999843 67777 333 3367999987654
No 114
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=46.57 E-value=17 Score=29.75 Aligned_cols=31 Identities=26% Similarity=0.884 Sum_probs=25.7
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhHh
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEY 53 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC-~FPVCRpCYEy 53 (811)
.|..|+.++. +...+.|.+| .|-+|-.||..
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhC
Confidence 5888987653 4588999999 99999999963
No 115
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=46.34 E-value=13 Score=42.68 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=21.6
Q ss_pred ceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 35 ~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
..++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23346899999987544
No 116
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=46.22 E-value=12 Score=27.48 Aligned_cols=28 Identities=32% Similarity=0.920 Sum_probs=12.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpC 50 (811)
.|.+|+..+. |..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 368899999999998877
No 117
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=46.00 E-value=97 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003541 366 LVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (811)
Q Consensus 366 ~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lT 398 (811)
.++...|..-+++.+- ++||.|||.++-|
T Consensus 5 ~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t 33 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVD----HIYIYDDGSTDGT 33 (97)
T ss_pred HHHHHHHHHHHHcCCC----EEEEEECCCCccH
Confidence 4566667777777653 5899999998743
No 118
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=45.18 E-value=16 Score=35.40 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=37.1
Q ss_pred ccCCccccccCCCccc--CCCCCceeecCCCCCCcchhhhHh---HhhcCCCcCCCCcc
Q 003541 14 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (811)
Q Consensus 14 ~~~~~~C~iCgd~vg~--~~~G~~fvaC~eC~FPVCRpCYEy---er~eG~~~CpqCKt 67 (811)
...++.|..||....+ ...| -|+.|. .||.|+- |+- ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999655 4568 999994 6999996 221 22255689999997
No 119
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=30 Score=41.68 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.9
Q ss_pred CCCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (811)
Q Consensus 345 ~~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~ 396 (811)
...||++-|+|+-+| |...+..+||-|++..-=+.---.|.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 356999999999999 9999999999999887766556678999998775
No 120
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.31 E-value=7.8 Score=43.38 Aligned_cols=36 Identities=28% Similarity=0.816 Sum_probs=27.5
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHhhcC
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC-~FPVCRpCYEyer~eG 58 (811)
-|.+|--++ .--.|+.|+|| +|-.|-||+---...|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887554 24579999999 9999999996544444
No 121
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.19 E-value=9.6 Score=44.06 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=35.5
Q ss_pred ccccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHhhcCCCcCCCCcccccccC
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHK 73 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~-FPVCRpCYEyer~eG~~~CpqCKt~ykr~k 73 (811)
..|..|..+| +|-.+|-|.||. |-+|-+|+.--..-|.. ||.-+|+-.+
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 4899998776 477899999998 99999999443333322 4556676544
No 122
>PRK07220 DNA topoisomerase I; Validated
Probab=44.07 E-value=13 Score=45.51 Aligned_cols=48 Identities=19% Similarity=0.587 Sum_probs=32.4
Q ss_pred ccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHhh----cCCCcCCCCcc
Q 003541 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (811)
Q Consensus 18 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FPVCRpCYEyer~----eG~~~CpqCKt 67 (811)
..|..||.++... ..|..|+.|. +||-|+--+-..++ --+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 57888755533321 12478999985
No 123
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=42.93 E-value=27 Score=38.59 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCCCCCcHHHHHHHhhhhcCCCCCcceEEEc
Q 003541 549 TNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 589 (811)
Q Consensus 549 tngpfIlnlDcDhyinnp~~Lr~amcfflDp~~g~~vafVQ 589 (811)
+..+||+++|.|++ |.+++-...+-+..--....+.+||=
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~Vv 165 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFVV 165 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEEE
Confidence 56799999999997 77776666666653222344677763
No 124
>PHA02926 zinc finger-like protein; Provisional
Probab=40.27 E-value=31 Score=37.29 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=42.3
Q ss_pred ccCCccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHhhc-----CCCcCCCCcccccccCCC
Q 003541 14 NVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (811)
Q Consensus 14 ~~~~~~C~iCgd~vg~~--~~G~~fvaC~eC~FPVCRpCYEyer~e-----G~~~CpqCKt~ykr~kg~ 75 (811)
.+....|.||=+.|-.. ++..-|--=..|+-.-|..|..--++. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34557899999987543 222223333467889999999766653 346799999999865433
No 125
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=39.49 E-value=20 Score=31.26 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=25.3
Q ss_pred cCCccccccCCC---cccCCCCCceeecCCCCCC
Q 003541 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (811)
Q Consensus 15 ~~~~~C~iCgd~---vg~~~~G~~fvaC~eC~FP 45 (811)
..|-+|.-|+.- +...++|...+-|-+|+|-
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 567889999855 4556899999999999984
No 126
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=36.61 E-value=19 Score=42.91 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=25.5
Q ss_pred ccCCccccccCCCcccCCCCCc-----------eee-----cCCCCCCcchhhhHhH
Q 003541 14 NVGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 54 (811)
Q Consensus 14 ~~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~FPVCRpCYEye 54 (811)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999544444322 222 0123789999999543
No 127
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=36.53 E-value=46 Score=29.10 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=36.2
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCC-CcCCCCcc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~-~~CpqCKt 67 (811)
...+|..||-.|.-.+.+ .-.+|.+|+=-+-.=|. .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998666666 45579999877444465 5577776 57999973
No 128
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=36.16 E-value=12 Score=38.65 Aligned_cols=26 Identities=27% Similarity=0.743 Sum_probs=19.7
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCc-chh
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP 49 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPV-CRp 49 (811)
|+-|... .+.+.-..|+.|-||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999876 2334578899999999 654
No 129
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=36.15 E-value=29 Score=27.67 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=32.6
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhh-----cCCCcCCCCcc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKT 67 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~-----eG~~~CpqCKt 67 (811)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|..
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899998 666778899999987776777765432 34567777753
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.05 E-value=15 Score=27.84 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=12.7
Q ss_pred HhHhhcCCCcCCCCccccc
Q 003541 52 EYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 52 Eyer~eG~~~CpqCKt~yk 70 (811)
.|+-++....||.|+.+-.
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCcCCCcCcCCCCcHH
Confidence 3444446789999987643
No 131
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=35.29 E-value=41 Score=26.58 Aligned_cols=43 Identities=23% Similarity=0.725 Sum_probs=31.6
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcc
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt 67 (811)
|.+|-... +++..+++. .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999888 333333332 679999999996555 67789999985
No 132
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=51 Score=38.48 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=42.0
Q ss_pred CCCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003541 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (811)
Q Consensus 346 ~~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~l 397 (811)
.+||+-.|+|+-.| |--..+.+||.|+|.--=+.=-..|.+.||+..+.
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dp 169 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDP 169 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCCh
Confidence 47999999999999 99999999999999865443356799999999974
No 133
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.73 E-value=13 Score=35.48 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=18.3
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCcCCCCcccc
Q 003541 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (811)
Q Consensus 36 fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~y 69 (811)
.+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 35576666 5566665666799999753
No 134
>PRK07219 DNA topoisomerase I; Validated
Probab=34.19 E-value=25 Score=43.75 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=32.1
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHh----hcCCCcCCCCccccccc
Q 003541 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 17 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~FPVCRpCYEyer----~eG~~~CpqCKt~ykr~ 72 (811)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 45788888765442 3565 88885 6777753332211 12347899999876543
No 135
>PRK14973 DNA topoisomerase I; Provisional
Probab=33.24 E-value=31 Score=43.76 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=32.1
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHhh-cC-----CCcCCCCccc
Q 003541 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (811)
Q Consensus 17 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~FPVCRpCYEyer~-eG-----~~~CpqCKt~ 68 (811)
...|..||.++-+. ..|. |+.|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 588 ~~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 588 IGPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred cccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 35799999876432 3454 99996 66888855544322 12 3689999973
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=32.27 E-value=50 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=34.7
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
.-|..|+.++--+. .+-++-=.||-| |.+|-|-.. ..+||-|+--+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999965544 244555579987 999997654 4799999876643
No 137
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=32.13 E-value=19 Score=27.41 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=11.9
Q ss_pred ccccccCCCcccCCCCCceeecCCCCC
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~F 44 (811)
+.|..|+.+-.+ +||.+|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357788887666 7777766 778875
No 138
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.57 E-value=32 Score=35.98 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=25.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ 68 (811)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998874321 23788887654332 3589999865
No 139
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.15 E-value=13 Score=40.86 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=24.6
Q ss_pred eeecccceeeccccchhheeecccceeeeeccch
Q 003541 770 LLQTPIFVSCSADRMDLWFCYGRYSYRIQDACPW 803 (811)
Q Consensus 770 GWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~~~~ 803 (811)
|| .--++||| .++++.+|.+|||++++.-.
T Consensus 231 ~~---~~~~i~ED-~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 231 GW---LEDTITED-ADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CC---CCCceecc-HHHHHHHHHCCCeEEEeecc
Confidence 67 56677866 89999999999999998644
No 140
>PRK11827 hypothetical protein; Provisional
Probab=31.03 E-value=34 Score=29.86 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=20.8
Q ss_pred CcchhhhHhHhhcCCCcCCCCcccccccCCCCcc
Q 003541 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAI 78 (811)
Q Consensus 45 PVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv 78 (811)
|+|+-=.+|...+..-+|..|+-.|--..|-|=.
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVl 45 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVL 45 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcccc
Confidence 4555444454333446788888888776565543
No 141
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=30.88 E-value=1e+02 Score=35.64 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=27.9
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhh
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amc 574 (811)
+.|+-.|=-.+-... +.+..||-.+|||-|+| -++.+-+-
T Consensus 143 ~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 143 SGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred cCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHH
Confidence 457777765443322 45899999999999986 46766543
No 142
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=30.82 E-value=25 Score=35.85 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=40.3
Q ss_pred CcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 26 ~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|.-+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478899999999999999999998888888888889999999995
No 143
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=30.80 E-value=21 Score=40.11 Aligned_cols=30 Identities=27% Similarity=0.924 Sum_probs=24.6
Q ss_pred CCCcchhhhHhHhhcCC--CcCCCCccccccc
Q 003541 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKH 72 (811)
Q Consensus 43 ~FPVCRpCYEyer~eG~--~~CpqCKt~ykr~ 72 (811)
+|-|||.|+---+-+-+ +-||-|.++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999976666555 8999999999754
No 144
>PRK12495 hypothetical protein; Provisional
Probab=30.71 E-value=23 Score=37.96 Aligned_cols=30 Identities=33% Similarity=0.840 Sum_probs=22.6
Q ss_pred ceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccccc
Q 003541 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 35 ~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
+-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 4455777777774 44899999999999864
No 145
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=30.71 E-value=25 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPV 46 (811)
.-.|..||.+|.++. ...-+.|..|+|.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999985443 22347898888865
No 146
>PRK03982 heat shock protein HtpX; Provisional
Probab=30.62 E-value=2.3e+02 Score=30.89 Aligned_cols=18 Identities=17% Similarity=-0.193 Sum_probs=11.8
Q ss_pred HHHHhhcccccccccchh
Q 003541 314 SWIFDQFPKWLPVNRETY 331 (811)
Q Consensus 314 swlL~q~~kw~Pv~R~t~ 331 (811)
.|+.-.+.+.+|+.+...
T Consensus 50 ~~i~~~~~~~~~l~~~~~ 67 (288)
T PRK03982 50 DKIVLASYNARIVSEEEA 67 (288)
T ss_pred HHHHHHhcCCEECChhhh
Confidence 455556778888876543
No 147
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.95 E-value=29 Score=27.18 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=19.0
Q ss_pred CCcc--ccccCCCcccCCCCCceeecCCCCC
Q 003541 16 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 44 (811)
Q Consensus 16 ~~~~--C~iCgd~vg~~~~G~~fvaC~eC~F 44 (811)
.+.. |.+||.......||- .-|.+|+.
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4444 888998877777886 44777764
No 148
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.73 E-value=17 Score=31.62 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=8.0
Q ss_pred CCcCCCCcccccc
Q 003541 59 NQSCPQCKTRYKK 71 (811)
Q Consensus 59 ~~~CpqCKt~ykr 71 (811)
.-+||+||.-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3556777766654
No 149
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.59 E-value=39 Score=39.03 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=35.2
Q ss_pred ccccCC-ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 12 IKNVGG-QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 12 ~~~~~~-~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
+..+.. ..|.||.+..- ++++ -.|+--.|..|...-... ...||.|++.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 344333 48999987642 2333 368999999999755443 458999999874
No 150
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=29.52 E-value=44 Score=24.46 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=14.6
Q ss_pred ccccCCCcccCCCCCceeecCCCCC
Q 003541 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (811)
Q Consensus 20 C~iCgd~vg~~~~G~~fvaC~eC~F 44 (811)
|..||-.|--.+.|..| .|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 56677665544445544 4777776
No 151
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=28.85 E-value=19 Score=30.13 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.1
Q ss_pred cCCCCccc
Q 003541 61 SCPQCKTR 68 (811)
Q Consensus 61 ~CpqCKt~ 68 (811)
.||.|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55555543
No 152
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.70 E-value=47 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=25.6
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHhh
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERK 56 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~-FPVCRpCYEyer~ 56 (811)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|-
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCC
Confidence 6999999974 2667777776 9999999965543
No 153
>PTZ00293 thymidine kinase; Provisional
Probab=28.23 E-value=28 Score=36.89 Aligned_cols=35 Identities=20% Similarity=0.572 Sum_probs=22.6
Q ss_pred ccccccCCCccc----CCCCCc-eeecCCCCCCcchhhhH
Q 003541 18 QVCQICGDNVGK----TVDGNP-FVACDVCAFPVCRPCYE 52 (811)
Q Consensus 18 ~~C~iCgd~vg~----~~~G~~-fvaC~eC~FPVCRpCYE 52 (811)
.+|..||.+--. ..+|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 334444 23223445789999995
No 154
>PRK08359 transcription factor; Validated
Probab=28.03 E-value=21 Score=36.88 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.6
Q ss_pred ccccccCCCcccC-----CCCCceeecCCCCCCcchhhh-HhHh
Q 003541 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (811)
Q Consensus 18 ~~C~iCgd~vg~~-----~~G~~fvaC~eC~FPVCRpCY-Eyer 55 (811)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997422 24443 44778888 6644
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.01 E-value=41 Score=41.05 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=5.7
Q ss_pred CCcCCCCccc
Q 003541 59 NQSCPQCKTR 68 (811)
Q Consensus 59 ~~~CpqCKt~ 68 (811)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3566666554
No 156
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=27.89 E-value=2e+02 Score=28.04 Aligned_cols=53 Identities=21% Similarity=0.548 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhccccc-----------c-----hHHHHHHHHHHHHHHHHHHHHhhc
Q 003541 268 INPYRMVIFLRLIILGIFLYYRIKNPVH-----------N-----AIALWLISVICEIWFAISWIFDQF 320 (811)
Q Consensus 268 ~~~yR~livl~lv~l~~yL~wRi~~~~~-----------~-----a~~lWl~~~i~Eiwfa~swlL~q~ 320 (811)
+-|||-..+...++++.|-+||+..+.. . -..+|++.++.=+..++-|+...|
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLYRPRKACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578877666666666677777654311 0 135798888887888888776543
No 157
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.69 E-value=19 Score=25.66 Aligned_cols=14 Identities=36% Similarity=0.805 Sum_probs=7.0
Q ss_pred hhcCCCcCCCCccc
Q 003541 55 RKDGNQSCPQCKTR 68 (811)
Q Consensus 55 r~eG~~~CpqCKt~ 68 (811)
..++.+.||+|+++
T Consensus 9 ~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 9 IEDDAKFCPNCGTP 22 (23)
T ss_pred CCCcCcchhhhCCc
Confidence 34444555555543
No 158
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=57 Score=28.73 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=34.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCC-CcCCCCc
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCK 66 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~-~~CpqCK 66 (811)
..+|..||-.|-..+.+-.| +|..|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 46899999999888877665 69999933322332 2357776 6799987
No 159
>PF12773 DZR: Double zinc ribbon
Probab=27.37 E-value=44 Score=26.79 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.9
Q ss_pred CccccccCCCcc
Q 003541 17 GQVCQICGDNVG 28 (811)
Q Consensus 17 ~~~C~iCgd~vg 28 (811)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 445666666555
No 160
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.04 E-value=20 Score=25.91 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.4
Q ss_pred HhhcCCCcCCCCccc
Q 003541 54 ERKDGNQSCPQCKTR 68 (811)
Q Consensus 54 er~eG~~~CpqCKt~ 68 (811)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346667788888765
No 161
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=26.85 E-value=42 Score=30.02 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.6
Q ss_pred cCCccccccCCC--ccc-CCCCCceeecCCCCCC
Q 003541 15 VGGQVCQICGDN--VGK-TVDGNPFVACDVCAFP 45 (811)
Q Consensus 15 ~~~~~C~iCgd~--vg~-~~~G~~fvaC~eC~FP 45 (811)
..|-+|.-|+.- |.+ .++|...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 467799999854 444 6889999999999984
No 162
>PRK13751 putative mercuric transport protein; Provisional
Probab=26.22 E-value=2e+02 Score=28.28 Aligned_cols=52 Identities=15% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccc-----------c-----chHHHHHHHHHHHHHHHHHHHHh
Q 003541 267 RINPYRMVIFLRLIILGIFLYYRIKNPV-----------H-----NAIALWLISVICEIWFAISWIFD 318 (811)
Q Consensus 267 ~~~~yR~livl~lv~l~~yL~wRi~~~~-----------~-----~a~~lWl~~~i~Eiwfa~swlL~ 318 (811)
.+.|||...++..++.+.|-+||+..+. + .-..+|++.++.=+..+|-|++.
T Consensus 46 ~lepyr~~fi~~a~~~l~~a~~~~yr~~~~C~~g~~Ca~p~~rk~~k~~~Wi~~vlvl~~L~fPy~~p 113 (116)
T PRK13751 46 VLEPYRPIFIGAALVALFFAWRRIYRPAAACKPGEVCAIPQVRATYKLIFWIVAALVLVALGFPYVMP 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCccCCcccchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3568997766554455556667765431 1 11457888777777777766654
No 163
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=26.15 E-value=21 Score=43.53 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=20.5
Q ss_pred eeeccccchhheeecccceeeeecc
Q 003541 777 VSCSADRMDLWFCYGRYSYRIQDAC 801 (811)
Q Consensus 777 ~s~t~d~~~~~~~~~~~~~~~~~~~ 801 (811)
.++|| |+++++++|++|||++++=
T Consensus 328 ~~vtE-D~~l~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 328 ETVTE-DAETALKLHRRGWNSAYLD 351 (713)
T ss_pred CCcCc-HHHHHHHHHHcCCeEEEec
Confidence 46786 5999999999999998864
No 164
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=25.98 E-value=46 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.844 Sum_probs=20.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpC 50 (811)
.|.+|+.++- |..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID----GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC----CCEeEEeCCCCCeEcCcc
Confidence 5899987643 433899999999876655
No 165
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.95 E-value=36 Score=27.67 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=29.9
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhh
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK 56 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~ 56 (811)
.+.|.+|+...++.... .-|.-|+--+|..|-.+...
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeee
Confidence 46899999998885433 56999999999999988765
No 166
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=25.87 E-value=48 Score=28.34 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=14.6
Q ss_pred ccccccCCCcccCC--CCCceeecCCC
Q 003541 18 QVCQICGDNVGKTV--DGNPFVACDVC 42 (811)
Q Consensus 18 ~~C~iCgd~vg~~~--~G~~fvaC~eC 42 (811)
..|..||..|.+.. .|+ .|-|.+|
T Consensus 3 ~~CP~CG~~iev~~~~~Ge-iV~Cp~C 28 (54)
T TIGR01206 3 FECPDCGAEIELENPELGE-LVICDEC 28 (54)
T ss_pred cCCCCCCCEEecCCCccCC-EEeCCCC
Confidence 36888998887753 344 3344333
No 167
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=25.87 E-value=18 Score=35.17 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=22.5
Q ss_pred eeecccceeeccccchhheeecccceeeeec
Q 003541 770 LLQTPIFVSCSADRMDLWFCYGRYSYRIQDA 800 (811)
Q Consensus 770 GWiY~i~~s~t~d~~~~~~~~~~~~~~~~~~ 800 (811)
||- ...+++ +|+++++++.+.|||+.++
T Consensus 89 ~~~--~~~~~~-ED~~l~~~l~~~G~~~~~~ 116 (193)
T PF13632_consen 89 GFD--DPFSIG-EDMDLGFRLRRAGYRIVYV 116 (193)
T ss_pred ccc--cccccc-chHHHHHHHHHCCCEEEEe
Confidence 674 355667 5599999999999999875
No 168
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=25.78 E-value=50 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=23.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEye 54 (811)
...|..|++.. +-.-|.+|..++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 56779999999999999654
No 169
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=18 Score=41.13 Aligned_cols=45 Identities=29% Similarity=0.733 Sum_probs=37.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcccc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~y 69 (811)
+|-||=+=|-.+-. =.||+--+|+.|.--..+.||..||-|++..
T Consensus 45 ~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 78888776554422 2489999999999999999999999999876
No 170
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=35 Score=34.01 Aligned_cols=44 Identities=27% Similarity=0.674 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCcc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt 67 (811)
.-..|.||=+..--. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 445899998875443 5667899999999988877 8899999993
No 171
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=25.53 E-value=32 Score=33.34 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=33.0
Q ss_pred cCCccccccCCC--cccCCCC-CceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 15 VGGQVCQICGDN--VGKTVDG-NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 15 ~~~~~C~iCgd~--vg~~~~G-~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
..+..|.-||.. |....++ -.|..| +.||.||-=.- .+-..+.||+|..+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 445688889953 3333332 379999 78999985332 3333345999997443
No 172
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.39 E-value=46 Score=41.74 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=32.8
Q ss_pred cCCccccccCCCccc---CCCCCceeecCCCCCCcchhhhHhHh-----------hcCCCcCCCCcccccccCC
Q 003541 15 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (811)
Q Consensus 15 ~~~~~C~iCgd~vg~---~~~G~~fvaC~eC~FPVCRpCYEyer-----------~eG~~~CpqCKt~ykr~kg 74 (811)
.....|..||..-.+ .-.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 699994 5777742111111 1124689999876654443
No 173
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=45 Score=36.90 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=17.2
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCC
Q 003541 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (811)
Q Consensus 14 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~ 43 (811)
...+..|.-||+- -|++|-.|.
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5667899999854 788888884
No 174
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=24.96 E-value=1.4e+02 Score=34.30 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=27.7
Q ss_pred ccchhhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhh
Q 003541 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (811)
Q Consensus 532 h~KAGALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amc 574 (811)
+.|+-.|=-.+-... +.+..||-.+|||-|+| -++.+-+-
T Consensus 142 ~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYvk 181 (381)
T TIGR02460 142 SGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYVK 181 (381)
T ss_pred cCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHHH
Confidence 467777765443322 45899999999999986 45666443
No 175
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=24.80 E-value=3.9e+02 Score=26.82 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhHhhHHhhCCCCCCchhhhhhccccccccCCch
Q 003541 365 PLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPS 444 (811)
Q Consensus 365 p~vt~nTVlS~lalDYP~dKl~~YVsDDG~s~lTf~aL~Eaa~FAk~WVPFCkK~~IepRaPe~YFs~k~d~~~~k~~pe 444 (811)
--.+..|++..++..|..+.+.+||.|=.+.. |..+.+ +. .+. ......+
T Consensus 51 KS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~--l~~~~~---~~----------~~~---------------~~~~~~~ 100 (205)
T PF01580_consen 51 KSTLLRTLLLSLALTYSPDDVQLYIIDPKGSD--LAPLAD---LP----------HVA---------------AVAVATD 100 (205)
T ss_dssp HHHHHHHHHHHHHTT--TTTEEEEEE-TTSSC--CGGGTT----T----------TBS---------------S-S-B-S
T ss_pred ccHHHHHHHHHHHHHhcCCccEEEEEcCCccc--cchhhh---hh----------hhc---------------ccccccc
Confidence 35667778888888887789999999988764 222221 00 000 0001123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003541 445 FVKDRRAMKREYEEFKIRINGLVA 468 (811)
Q Consensus 445 f~~err~mKreYEe~k~RIe~L~~ 468 (811)
.-+-.+.++..++||+.|.+.+.+
T Consensus 101 ~~~~~~~l~~l~~em~~R~~~l~~ 124 (205)
T PF01580_consen 101 PEEILRLLEELVEEMERRQALLRE 124 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788899999999977753
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.69 E-value=38 Score=39.82 Aligned_cols=51 Identities=24% Similarity=0.523 Sum_probs=32.5
Q ss_pred cCCCCC-ceeecCCCCCC-cchhhh---HhHhhcCCCcCCCCcccccccCCCCccc
Q 003541 29 KTVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAIL 79 (811)
Q Consensus 29 ~~~~G~-~fvaC~eC~FP-VCRpCY---Eyer~eG~~~CpqCKt~ykr~kg~prv~ 79 (811)
++-.|- .++.|..|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCC
Confidence 345565 47788888765 366663 3445566667888887777666666443
No 177
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.52 E-value=27 Score=33.46 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.3
Q ss_pred eecCCCCCCcchhhhHhHhhcCC-CcCCCCcccccc
Q 003541 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (811)
Q Consensus 37 vaC~eC~FPVCRpCYEyer~eG~-~~CpqCKt~ykr 71 (811)
+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4566665 334444322 359999987544
No 178
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=24.37 E-value=56 Score=37.55 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=22.7
Q ss_pred ceeecCCCCCCcchhhhHhHhhcC-CCcCCCCccccccc
Q 003541 35 PFVACDVCAFPVCRPCYEYERKDG-NQSCPQCKTRYKKH 72 (811)
Q Consensus 35 ~fvaC~eC~FPVCRpCYEyer~eG-~~~CpqCKt~ykr~ 72 (811)
..++|+||+.-+=+| ..+.| .-.||+|++.-.|+
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 367899998764333 12233 35799999998665
No 179
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=24.05 E-value=47 Score=39.80 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=24.1
Q ss_pred CccccccCCCcccCCCC----------Cceee--cCCCCCCcchhhhHhHhhcC
Q 003541 17 GQVCQICGDNVGKTVDG----------NPFVA--CDVCAFPVCRPCYEYERKDG 58 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G----------~~fva--C~eC~FPVCRpCYEyer~eG 58 (811)
..+|.|||.+--++.+- .-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 57999999973322221 11222 112269999999954 3444
No 180
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.81 E-value=26 Score=33.51 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=16.4
Q ss_pred eecCCCCCCcchhhhHhHhhcCC-CcCCCCccccc
Q 003541 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYK 70 (811)
Q Consensus 37 vaC~eC~FPVCRpCYEyer~eG~-~~CpqCKt~yk 70 (811)
.-|+.|+ ++++..+-. -.||+|+.+-.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4466666 244444443 56999997643
No 181
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.77 E-value=28 Score=34.24 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.9
Q ss_pred cCCCcCCCCccc
Q 003541 57 DGNQSCPQCKTR 68 (811)
Q Consensus 57 eG~~~CpqCKt~ 68 (811)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344669999976
No 182
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.44 E-value=33 Score=30.26 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.7
Q ss_pred hhcCCCcCCCCcccccc
Q 003541 55 RKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 55 r~eG~~~CpqCKt~ykr 71 (811)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46899999999999973
No 183
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=23.29 E-value=1.7e+02 Score=33.42 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=36.6
Q ss_pred hhhHHHHHhcccCCCCCEEEEecCCCCCCcHHHHHHHhhhhcC------------CC-------CCcceEEEccCcccc
Q 003541 536 GAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD------------PN-------LGKHVCYVQFPQRFD 595 (811)
Q Consensus 536 GALNalLrvSavltngpfIlnlDcDhyinnp~~Lr~amcfflD------------p~-------~g~~vafVQ~PQ~F~ 595 (811)
..+-++|+. + +.+++++.|||+=.-+++.+++.+-.+.+ +. ....+-.|||||-|.
T Consensus 85 ~SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 85 ESVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred HHHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 345555553 2 34899999999854578888887765432 10 123567789999994
No 184
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.15 E-value=45 Score=33.37 Aligned_cols=43 Identities=37% Similarity=0.872 Sum_probs=25.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-hhcCCCcCCCCcc
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEye-r~eG~~~CpqCKt 67 (811)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557999984 47999988852 222211111 1233478999986
No 185
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.84 E-value=1.8e+02 Score=37.00 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhh
Q 003541 297 AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLS 336 (811)
Q Consensus 297 a~~lWl~~~i~Eiwfa~swlL~q~~kw~Pv~R~t~~drL~ 336 (811)
..|+|+++++. +..++.|++.-+.+|++-.|..-..||.
T Consensus 44 p~~~~~~~l~~-~~~~~~~~l~~~~rfr~P~~~ea~~Rle 82 (851)
T TIGR02302 44 PFWLHIAGLVL-FAALALVALIPAIRFRWPSRDEALARLE 82 (851)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCHHHHHHHHH
Confidence 35778776666 3333433344555666666655555554
No 186
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.70 E-value=1e+02 Score=25.38 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=28.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCC---CcchhhhHhHhh-cCCCcCCCCc
Q 003541 19 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 66 (811)
Q Consensus 19 ~C~iCgd~vg~~~~G~~fvaC~eC~F---PVCRpCYEyer~-eG~~~CpqCK 66 (811)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+-=+. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 344455567788 4543 244577765544 4467899996
No 187
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.56 E-value=47 Score=43.26 Aligned_cols=47 Identities=23% Similarity=0.648 Sum_probs=29.8
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc-----chhhhHhH--hhcCCCcCCCCcccccc
Q 003541 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYE--RKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 18 ~~C~iCgd~vg~~~~G~~fvaC~eC~FPV-----CRpCYEye--r~eG~~~CpqCKt~ykr 71 (811)
..|.-||..+-. .-|.+|+-+. |..|=--- -..+...||.|+++-..
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 478888886422 2688888664 77775321 11235579999887654
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=22.41 E-value=28 Score=40.22 Aligned_cols=64 Identities=23% Similarity=0.504 Sum_probs=40.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHhhcCCCcCCCCccc---cccc--CCCCcccCC
Q 003541 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR---YKKH--KGSPAILGD 81 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~---ykr~--kg~prv~gd 81 (811)
-+-.|..||+-+|+...----.+|-.=--- |==|||--+.|.+.||-|+.- .+|. -|+|-|+-+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~--rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHL--RCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHH--HHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 345799999999997654445566211001 112677789999999999832 2332 366777755
No 189
>PF04641 Rtf2: Rtf2 RING-finger
Probab=22.08 E-value=76 Score=34.15 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=36.8
Q ss_pred CCccccccCCCcccCCCCC-ceeecCCCCCCcchhhhHhHhhcCCCcCCCCccccc
Q 003541 16 GGQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 16 ~~~~C~iCgd~vg~~~~G~-~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
..-+|.|++..+ +|. -||+=--||=-+|..|.+-- + ....||.|.++|.
T Consensus 112 ~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccc
Confidence 344899998776 454 58887788888888888544 4 4567999999996
No 190
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=21.94 E-value=54 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=21.1
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCc
Q 003541 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (811)
Q Consensus 15 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPV 46 (811)
.---+|.-||.+-.+.. |+ .+.|.||||.|
T Consensus 18 ~miYiCgdC~~en~lk~-~D-~irCReCG~RI 47 (62)
T KOG3507|consen 18 TMIYICGDCGQENTLKR-GD-VIRCRECGYRI 47 (62)
T ss_pred cEEEEeccccccccccC-CC-cEehhhcchHH
Confidence 33458999998855543 44 46899999976
No 191
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.93 E-value=23 Score=33.68 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=17.5
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCcCCCCccccccc
Q 003541 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 36 fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~ 72 (811)
-+.|+.|+. +++..+-.-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 356777764 345555556699999986443
No 192
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.81 E-value=35 Score=32.62 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.7
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCcCCCCcccccc
Q 003541 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 37 vaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
.-|+.|+ ++++..+-...||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4566666 345554445779999976533
No 193
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=21.75 E-value=48 Score=33.62 Aligned_cols=45 Identities=31% Similarity=0.782 Sum_probs=32.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcch-hhhHhHhhcCCCcCCCCcccccccC
Q 003541 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCYEYERKDGNQSCPQCKTRYKKHK 73 (811)
Q Consensus 17 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCR-pCYEyer~eG~~~CpqCKt~ykr~k 73 (811)
.++|-||-+.+ .-..|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~-------~KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESE-------IKYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcch-------hhccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 46888887653 23679999999996 899543 34799998766443
No 194
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=21.47 E-value=2.1e+02 Score=36.45 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred ccCCCCCEEEEecCCCCCCcHHHHHHHhhhh-cCCCCCcceEEEccCccccCCCCcccchhhhhHH-HhhhhccccCCCc
Q 003541 546 AVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF-FDINLRGLDGIQG 623 (811)
Q Consensus 546 avltngpfIlnlDcDhyinnp~~Lr~amcff-lDp~~g~~vafVQ~PQ~F~nid~~D~y~n~n~vF-fd~~~~GlDG~qg 623 (811)
.++.+-.||+.+|+|-. .+|++|.+.+--| .||+.|--.| |..-.+... =.+-+.-+.. =...++.-+..-|
T Consensus 436 ~L~~~v~~il~vD~dT~-~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w---~v~~Q~FEY~Ish~l~Ka~ESvFG 509 (862)
T KOG2571|consen 436 ALMPSVDYILVVDADTR-LDPDALYHLVKVFDEDPQVGGACG--RILNKGGSW---VVAYQNFEYAISHNLQKATESVFG 509 (862)
T ss_pred HhcCcceEEEEecCCCc-cCcHHHHHHHHHhccCcccceecc--ccccCCCce---EEeHHHHHHHHHHHHHHhhhhhce
Confidence 34566679999999997 7999999999988 6996554333 222111111 0001111111 1235566666667
Q ss_pred ccccccch--hhchhhhcC
Q 003541 624 PVYVGTGC--VFNRTALYG 640 (811)
Q Consensus 624 p~y~GTgc--vfRR~ALyG 640 (811)
-+-|=.|| +||=+||-+
T Consensus 510 ~VsclPGcfs~yR~~aL~~ 528 (862)
T KOG2571|consen 510 CVSCLPGCFSLYRASALMD 528 (862)
T ss_pred eEEecCchhHHHHHHHHhc
Confidence 77666665 588888854
No 195
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=20.83 E-value=1e+02 Score=36.08 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCCceeEEEeCCCCCCCCHHHHHHHHHHHHcCCCCC-CCcEEEEecCCCchh
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV-DKVSCYVSDDGAAML 397 (811)
Q Consensus 347 ~LP~VDVFV~T~dP~kEPp~vt~nTVlS~lalDYP~-dKl~~YVsDDG~s~l 397 (811)
..|.+-|+|-+|| - |..+.+||-++|+.. |. ++..|+||.||....
T Consensus 91 ~~~~~pVlV~AcN---R-p~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~ 137 (434)
T PF03071_consen 91 KEPVIPVLVFACN---R-PDYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEE 137 (434)
T ss_dssp ------EEEEESS-----TT-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HH
T ss_pred CCCcceEEEEecC---C-cHHHHHHHHHHHHcC-CCCCCccEEEEecCCcHH
Confidence 4667778888887 4 478999999999988 65 688999999998863
No 196
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=20.65 E-value=68 Score=30.62 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCCCceeecCCCCCC--cchhhhHhHhhcCCCcCCCCcccccc
Q 003541 31 VDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 71 (811)
Q Consensus 31 ~~G~~fvaC~eC~FP--VCRpCYEyer~eG~~~CpqCKt~ykr 71 (811)
+-|-.-..|.+|+.- ++..| +|..||+|..+++.
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 446677888888754 45555 46899999999964
No 197
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.53 E-value=31 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=35.9
Q ss_pred eeEEEeCCCCCCCCHHHHHHHHHHHHc----CCCCCCCcEEEEecCCCch
Q 003541 351 VDIFVSTVDPLKEPPLVTANTVLSILA----VDYPVDKVSCYVSDDGAAM 396 (811)
Q Consensus 351 VDVFV~T~dP~kEPp~vt~nTVlS~la----lDYP~dKl~~YVsDDG~s~ 396 (811)
|.||||||| ||+.++.+|+.+.+. .||+ .++.|||+|||.++
T Consensus 1 ~SIliP~~n---e~~~~l~~~l~~~~~~~~~~~~~-~~~eI~vldD~~d~ 46 (254)
T cd04191 1 TAIVMPVYN---EDPARVFAGLRAMYESLAKTGLA-DHFDFFILSDTRDP 46 (254)
T ss_pred CEEEEeCCC---CCHHHHHHHHHHHHHHHHhcCCc-CceEEEEECCCCCh
Confidence 679999999 999999999999775 4652 36999999999886
No 198
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.29 E-value=50 Score=38.21 Aligned_cols=32 Identities=28% Similarity=0.717 Sum_probs=22.4
Q ss_pred eecCCCCCCcchhhhHhHhhcC-CCcCCCCccccccc
Q 003541 37 VACDVCAFPVCRPCYEYERKDG-NQSCPQCKTRYKKH 72 (811)
Q Consensus 37 vaC~eC~FPVCRpCYEyer~eG-~~~CpqCKt~ykr~ 72 (811)
++|++|+.-+..|= .+.| ...||+|++.-.|+
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCC
Confidence 78999998765431 1233 35699999998665
No 199
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.17 E-value=34 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=13.8
Q ss_pred hcCCCcCCCCccccccc
Q 003541 56 KDGNQSCPQCKTRYKKH 72 (811)
Q Consensus 56 ~eG~~~CpqCKt~ykr~ 72 (811)
++.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 56668999999999873
No 200
>PRK10220 hypothetical protein; Provisional
Probab=20.15 E-value=77 Score=30.87 Aligned_cols=25 Identities=32% Similarity=0.879 Sum_probs=15.3
Q ss_pred CcchhhhHhHhhcCCCcCCCCccccc
Q 003541 45 PVCRPCYEYERKDGNQSCPQCKTRYK 70 (811)
Q Consensus 45 PVCRpCYEyer~eG~~~CpqCKt~yk 70 (811)
|-|..=|-||-.+ .-+||.|.-...
T Consensus 7 P~C~seytY~d~~-~~vCpeC~hEW~ 31 (111)
T PRK10220 7 PKCNSEYTYEDNG-MYICPECAHEWN 31 (111)
T ss_pred CCCCCcceEcCCC-eEECCcccCcCC
Confidence 4444446666433 378999987664
No 201
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.10 E-value=44 Score=26.02 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.6
Q ss_pred cCCCCcccccc
Q 003541 61 SCPQCKTRYKK 71 (811)
Q Consensus 61 ~CpqCKt~ykr 71 (811)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999974
Done!