Query 003541
Match_columns 811
No_of_seqs 333 out of 1049
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 17:44:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1591-1594//hhsearch_pdb/003541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 1.0 1 1 303.5 8.9 90 3-93 2-91 (93)
2 4hg6_A Cellulose synthase subu 1.0 1 1 236.7 22.2 256 271-643 65-337 (802)
3 2z86_A Chondroitin synthase; G 1.0 1 1 103.5 15.1 162 346-639 372-534 (625)
4 2d7i_A Polypeptide N-acetylgal 1.0 1 1 98.5 8.8 176 346-644 109-305 (570)
5 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 93.8 11.8 174 345-644 62-257 (501)
6 1qg8_A Protein (spore coat pol 1.0 1 1 92.4 6.2 162 349-639 1-169 (255)
7 1xhb_A Polypeptide N-acetylgal 1.0 1 1 91.9 13.0 176 345-644 25-225 (472)
8 2z86_A Chondroitin synthase; G 1.0 1 1 88.8 9.9 175 345-644 89-297 (625)
9 3bcv_A Putative glycosyltransf 1.0 1 1 86.0 10.7 110 347-579 3-112 (240)
10 3ckj_A Putative uncharacterize 1.0 1 1 78.9 11.2 164 349-641 48-228 (329)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=303.46 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78888876456558864344588842478999123057899973312367576309976888720001237998656999
Q 003541 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (811)
Q Consensus 3 ~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FPVCRpCYEyer~eG~~~CpqCKt~ykr~kg~prv~gd~ 82 (811)
+.|.+++|||+++++|+||||||+||++++||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 8777788752005887261145743547789888763006773518899999852674055458762233688876666-
Q ss_pred CCCCCCCCCCC
Q ss_conf 87788798877
Q 003541 83 EEDGDADDGAS 93 (811)
Q Consensus 83 ~~e~~~dd~~~ 93 (811)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred CCCCCCCCCCC
T ss_conf 44465332445
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=236.69 Aligned_cols=256 Identities=23% Similarity=0.397 Sum_probs=201.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 589-99999999999999882046651-----378899999999999999999631665524561023566553202799
Q 003541 271 YRM-VIFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGE 344 (811)
Q Consensus 271 yR~-liii~lv~l~~yl~wRi~~~~~~-----a~~lWl~~vi~Eiwfa~sWlL~q~~kw~Pv~R~t~~drL~~r~~~~~~ 344 (811)
.|+ ++++.+++.+.|++||++.+++. ..++|++++++|+++.+.|++..+..|.|..|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------C
T ss_conf 5789999999999999999866006775305899999999999999999999999998365678888989---------8
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99997115998278999998799999999988298999982899915998602079865459996443756775079989
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepR 424 (811)
++.+|.|+|+||||| |++.++.+|+.|+++.+||.+++.++|.|||.++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC-----------------------
T ss_conf 567984899999799---989999999999984669998289999989987642234-----------------------
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91012210001112557822499999999999999999988887520586334234689989999878897421011147
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~ 504 (811)
..|+.+++..+.. + .++.+.++
T Consensus 190 ----------------~d~~i~~~~~~~~---~----~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQERR---R----ELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHHHHH---H----HHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHHHHH---H----HHHHHHHH-----------------------------------
T ss_conf ----------------8878999988666---9----99999985-----------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCC
Q ss_conf 998788899878089982458999876631114479998502578998899944999889279999986311-3789996
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (811)
Q Consensus 505 ~g~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff-~Dp~~g~ 583 (811)
..+.|+.|++ +++.||||+|.+++. ++++||+++|+|.+ +.|++|++.+.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred -----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf -----------6947999268----877636899999996----59999999999988-18589999999984099----
Q ss_pred CEEEECCCCCCCCCCCC-------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHC---CCCC
Q ss_conf 34898148301699996-------511002467885640113577863212420232053105---9999
Q 003541 584 HVCYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (811)
Q Consensus 584 ~VafVQtPQrF~N~d~~-------D~~~nq~~vFfdviq~GrDg~qgp~~~GTgcv~RR~ALy---G~~P 643 (811)
++++||+++.+.|.++. ..+.+++..||...+.+.+.+++++++|+++++||+++. |+++
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~ 337 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAG 337 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCC
T ss_pred CEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCC
T ss_conf 8599965679767855765444776516789999888875476438845426640324999997088678
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=103.51 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=111.6
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99971159982789999987999999999882989999828999159986020798654599964437567750799899
Q 003541 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (811)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepRa 425 (811)
...|.|.|.|+||| ++ ..+..+|.|+++.+|| .+.++|.|||.++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred CCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHHH---------------------
T ss_conf 35971799995789---88-9999999999817699--828999989698649999999---------------------
Q ss_pred CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 10122100011125578224999999999999999999888875205863342346899899998788974210111479
Q 003541 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (811)
Q Consensus 426 Pe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~~ 505 (811)
+.+
T Consensus 425 ----------------------------------------~~~------------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HYA------------------------------------- 427 (625)
T ss_dssp ----------------------------------------HHT-------------------------------------
T ss_pred ----------------------------------------HHH-------------------------------------
T ss_conf ----------------------------------------885-------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCC
Q ss_conf 98788899878089982458999876631114479998502578998899944999889279999986311-37899963
Q 003541 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (811)
Q Consensus 506 g~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff-~Dp~~g~~ 584 (811)
..|++.++. ++. ..+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.| .+| +
T Consensus 428 --------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------HCCCEEEEE-CCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----C
T ss_conf --------499389991-798-----8989999999985----67787999889766-28359999999998479----8
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHC
Q ss_conf 4898148301699996511002467885640113577863212420232053105
Q 003541 585 VCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 585 VafVQtPQrF~N~d~~D~~~nq~~vFfdviq~GrDg~qgp~~~GTgcv~RR~ALy 639 (811)
+++|.+...+.+.+........... ....+.+...+++|.+.++||+++.
T Consensus 485 ~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~~~ 534 (625)
T 2z86_A 485 LACVYTTNRNIDREGNLISNGYNWP-----IYSREKLTSAMICHHFRMFTARAWN 534 (625)
T ss_dssp CSEEEEEEEEECTTSCEEEECCCCS-----SCCHHHHTTSCCCCSCEEEEHHHHT
T ss_pred EEEEEEEEEEECCCCCEECCCCCCC-----CCCHHHHHHCCCCCCEEEEEHHHHH
T ss_conf 1399820489879998741676666-----5788898535467746898899999
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=98.54 Aligned_cols=176 Identities=18% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99971159982789999987999999999882989999828999159986020-79865459996443756775079989
Q 003541 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lT-f~aL~Eaa~FA~~WVPFCrK~~IepR 424 (811)
+.+|.|.|.|+|+| |....+..||.|+++..||...+.|.|.|||.++-| .+.|.
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~--------------------- 164 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE--------------------- 164 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH---------------------
T ss_pred CCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH---------------------
T ss_conf 88997599999789---878999999999983587457679999989998378899999---------------------
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91012210001112557822499999999999999999988887520586334234689989999878897421011147
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~ 504 (811)
.+.+
T Consensus 165 ----------------------------------------~~~~------------------------------------ 168 (570)
T 2d7i_A 165 ----------------------------------------DYMA------------------------------------ 168 (570)
T ss_dssp ----------------------------------------HHHT------------------------------------
T ss_pred ----------------------------------------HHHH------------------------------------
T ss_conf ----------------------------------------9997------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 99878889987808998245899987663111447999850257899889994499988927999998631137899963
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (811)
Q Consensus 505 ~g~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~Dp~~g~~ 584 (811)
..|++.++..+++. .+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.|.+.. .
T Consensus 169 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~~---~ 226 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARNR---K 226 (570)
T ss_dssp ---------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHCT---T
T ss_pred ---------HCCEEEEEECCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHCC---C
T ss_conf ---------47808999899887-----989999999986----67888999759852-24038999999998489---7
Q ss_pred EEEECCCCCCCCCCCCCCCH---------HHHHHHHHHHHCC--------CCCCCCCCCCCCCHHHCHHHHC---CCCCC
Q ss_conf 48981483016999965110---------0246788564011--------3577863212420232053105---99999
Q 003541 585 VCYVQFPQRFDGIDRNDRYA---------NRNTVFFDINLRG--------LDGIQGPVYVGTGCVFNRTALY---GYEPP 644 (811)
Q Consensus 585 VafVQtPQrF~N~d~~D~~~---------nq~~vFfdviq~G--------rDg~qgp~~~GTgcv~RR~ALy---G~~Pp 644 (811)
+ .|.....+.+.+...... -....+|..+... ......+...|...++||+++. ||++.
T Consensus 227 ~-vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~ 305 (570)
T 2d7i_A 227 T-IVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPG 305 (570)
T ss_dssp E-EEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTT
T ss_pred E-EEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEECCCCCCEEEEEEHHHHHHCCCCCCC
T ss_conf 7-986003022787542215667765541454331020456544540377752654553536899999999865898876
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=93.76 Aligned_cols=174 Identities=16% Similarity=0.101 Sum_probs=113.0
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99997115998278999998799999999988298999982899915998602079865459996443756775079989
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepR 424 (811)
+..+|.|.|.|+|+| |....+..||.|+++..||...+.|.|.|||.++-|...+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHHH----------------------
T ss_conf 867997799999696---8689999999999850866335149999789995678999----------------------
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91012210001112557822499999999999999999988887520586334234689989999878897421011147
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~ 504 (811)
+ +
T Consensus 117 -----------------------------------------~---------~---------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------L---------G---------------------------- 118 (501)
T ss_dssp -----------------------------------------G---------G----------------------------
T ss_pred -----------------------------------------H---------H----------------------------
T ss_conf -----------------------------------------8---------4----------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 99878889987808998245899987663111447999850257899889994499988927999998631137899963
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (811)
Q Consensus 505 ~g~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~Dp~~g~~ 584 (811)
..|++.|+..+++. .+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.|... .
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~----~ 175 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED----R 175 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC----T
T ss_pred ---------CCCCEEEEECCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC----C
T ss_conf ---------18987999899886-----889999998986----68988999779830-6720799999999839----9
Q ss_pred EEEECCCCCCCCCCCCCCC-------HH-HHHHHHH--------HHH---CCCCCCCCCCCCCCCHHHCHHHHC---CCC
Q ss_conf 4898148301699996511-------00-2467885--------640---113577863212420232053105---999
Q 003541 585 VCYVQFPQRFDGIDRNDRY-------AN-RNTVFFD--------INL---RGLDGIQGPVYVGTGCVFNRTALY---GYE 642 (811)
Q Consensus 585 VafVQtPQrF~N~d~~D~~-------~n-q~~vFfd--------viq---~GrDg~qgp~~~GTgcv~RR~ALy---G~~ 642 (811)
.++|.......+.+..... +. .....|. ... .....+..+...|...++||+++. ||+
T Consensus 176 ~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfd 255 (501)
T 2ffu_A 176 TRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYD 255 (501)
T ss_dssp TEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCC
T ss_pred CEEEEEEECCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCC
T ss_conf 76999405338588734605776633276206777445389889851037977764475312148999899999748888
Q ss_pred CC
Q ss_conf 99
Q 003541 643 PP 644 (811)
Q Consensus 643 Pp 644 (811)
+.
T Consensus 256 e~ 257 (501)
T 2ffu_A 256 MM 257 (501)
T ss_dssp TT
T ss_pred CC
T ss_conf 54
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=92.38 Aligned_cols=162 Identities=11% Similarity=0.153 Sum_probs=110.0
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 71159982789999987999999999882989999828999159986020798654599964437567750799899101
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (811)
|.|.|.|||+| ++ ..+..|+.|+++..|| .+.++|.|||.++-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHH------------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108999999------------------------
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 22100011125578224999999999999999999888875205863342346899899998788974210111479987
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~~g~~ 508 (811)
+.
T Consensus 51 -------------------------------------~~----------------------------------------- 52 (255)
T 1qg8_A 51 -------------------------------------FL----------------------------------------- 52 (255)
T ss_dssp -------------------------------------GG-----------------------------------------
T ss_pred -------------------------------------HH-----------------------------------------
T ss_conf -------------------------------------86-----------------------------------------
Q ss_pred CCCCCCCCCEEEEECCCCCC----CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 88899878089982458999----8766311144799985025789988999449998892799999863113-789996
Q 003541 509 DAEGNELPRLVYVSREKRPG----FQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (811)
Q Consensus 509 d~~g~~lP~LvYVsReKrpg----~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~-Dp~~g~ 583 (811)
.-|++.|+..+.. + .....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 53 -----~~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 53 -----NDNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp -----GSTTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred -----HCCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf -----0698899964653-332221466789999999987----58888999689876-28279999999998589----
Q ss_pred CEEEECCCCCCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHC
Q ss_conf 348981483016--99996511002467885640113577863212420232053105
Q 003541 584 HVCYVQFPQRFD--GIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (811)
Q Consensus 584 ~VafVQtPQrF~--N~d~~D~~~nq~~vFfdviq~GrDg~qgp~~~GTgcv~RR~ALy 639 (811)
++++|.+...+. +.+.. ........ .............|++.++||+++.
T Consensus 118 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~rr~~~~ 169 (255)
T 1qg8_A 118 EKAVIYSASKTYHLNENRD-IVKETVRP-----AAQVTWNAPCAIDHCSVMHRYSVLE 169 (255)
T ss_dssp TCCEEEEEEEEEEEC---C-EEEEEEEC-----CCSCBSCCTTTSCGGGEEEETHHHH
T ss_pred CCEEEEECEEEEEECCCCC-CHHHCCCC-----HHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf 9059984328998578876-51220586-----4778875158776532778899997
No 7
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=91.95 Aligned_cols=176 Identities=16% Similarity=0.105 Sum_probs=113.7
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99997115998278999998799999999988298999982899915998602-07986545999644375677507998
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWVPFCKKYNIEP 423 (811)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~l-Tf~aL~Eaa~FA~~WVPFCrK~~Iep 423 (811)
+..+|.|.|.|+|+| |+...+..||.|+++..||...+.+.|.|||.++- |.+.|.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------- 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------- 82 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHHH-------------------
T ss_conf 867997599999678---8789999999999865957676079999779996789999999-------------------
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 99101221000111255782249999999999999999998888752058633423468998999987889742101114
Q 003541 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (811)
Q Consensus 424 RaPe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~ 503 (811)
+.+
T Consensus 83 ------------------------------------------~~~----------------------------------- 85 (472)
T 1xhb_A 83 ------------------------------------------YVK----------------------------------- 85 (472)
T ss_dssp ------------------------------------------HHH-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
T ss_conf ------------------------------------------998-----------------------------------
Q ss_pred CCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCC
Q ss_conf 7998788899878-0899824589998766311144799985025789988999449998892799999863113-7899
Q 003541 504 ENGGLDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNL 581 (811)
Q Consensus 504 ~~g~~d~~g~~lP-~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~-Dp~~ 581 (811)
.+| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.|. ++
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~-- 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR-- 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT--
T ss_pred ----------HCCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC--
T ss_conf ----------7798579998898787-----69999999986----15876999889857-67347999999998399--
Q ss_pred CCCEEEECCCCCCCCCCCCCCCH--H------HHHHHHH-----------HHHCCCCCCCCCCCCCCCHHHCHHHHC---
Q ss_conf 96348981483016999965110--0------2467885-----------640113577863212420232053105---
Q 003541 582 GKHVCYVQFPQRFDGIDRNDRYA--N------RNTVFFD-----------INLRGLDGIQGPVYVGTGCVFNRTALY--- 639 (811)
Q Consensus 582 g~~VafVQtPQrF~N~d~~D~~~--n------q~~vFfd-----------viq~GrDg~qgp~~~GTgcv~RR~ALy--- 639 (811)
.++.+.. ..+.+.+...... . .....|. ...........+...|...++||+++.
T Consensus 144 --~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iG 220 (472)
T 1xhb_A 144 --RTVVCPI-IDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIG 220 (472)
T ss_dssp --TEEEEEE-EEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTT
T ss_pred --CEEEEEE-EEEECCCCCEECCCCCCCCCEEECCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCC
T ss_conf --7799922-5317687743215787503233025513315589788730348877764685105445778999999728
Q ss_pred CCCCC
Q ss_conf 99999
Q 003541 640 GYEPP 644 (811)
Q Consensus 640 G~~Pp 644 (811)
||++.
T Consensus 221 gfde~ 225 (472)
T 1xhb_A 221 TYDAG 225 (472)
T ss_dssp SCCTT
T ss_pred CCCCC
T ss_conf 99976
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=88.81 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=118.2
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99997115998278999998799999999988298999982899915998602079865459996443756775079989
Q 003541 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (811)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepR 424 (811)
+..+|.|+|+|+|+| |+ ..+..|+.|+++.+||. .+.++|.|||.++-|.+. ++ +
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~-------~~-------~------ 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEI-------VR-------E------ 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHH-------HH-------T------
T ss_pred CCCCCCEEEEEECCC---CH-HHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHH-------HH-------H------
T ss_conf 346982799990388---57-88999999998436579-869999967983207999-------99-------8------
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91012210001112557822499999999999999999988887520586334234689989999878897421011147
Q 003541 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (811)
Q Consensus 425 aPe~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~ 504 (811)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------HH-------------------------------------
T ss_conf -----------------------------------------56-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 9987888998780899824589998766311144799985025789988999449998892799999863113-789996
Q 003541 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (811)
Q Consensus 505 ~g~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~-Dp~~g~ 583 (811)
..+.+.|+.+++ ..+.||+|+|.+++. +.|+||+++|+|.. +.|++|.+.+.+|. ++
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred CEEEECCCCCCCCCCCCC-C------CHHH-----------------------HHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 348981483016999965-1------1002-----------------------467885640113577863212420232
Q 003541 584 HVCYVQFPQRFDGIDRND-R------YANR-----------------------NTVFFDINLRGLDGIQGPVYVGTGCVF 633 (811)
Q Consensus 584 ~VafVQtPQrF~N~d~~D-~------~~nq-----------------------~~vFfdviq~GrDg~qgp~~~GTgcv~ 633 (811)
.+++|+..+.+.+....- . +.+. ...|..............++.|++.++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 283 (625)
T 2z86_A 204 NVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAF 283 (625)
T ss_dssp TEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEE
T ss_pred CEEEEEEEEECCCCCCCHHHCCCCHHHHHHCCHHCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECEEEE
T ss_conf 63999855651674221222046467766340120577311333247764500343203431013677525885022555
Q ss_pred CHHHHC---CCCCC
Q ss_conf 053105---99999
Q 003541 634 NRTALY---GYEPP 644 (811)
Q Consensus 634 RR~ALy---G~~Pp 644 (811)
||+++. |+++.
T Consensus 284 rr~~l~~iGgfde~ 297 (625)
T 2z86_A 284 AKKWLFRAGWFDEE 297 (625)
T ss_dssp ETHHHHHHCCCCTT
T ss_pred EHHHHHHHCCCCCC
T ss_conf 78999970788630
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=86.00 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=85.3
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99711599827899999879999999998829899998289991599860207986545999644375677507998991
Q 003541 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (811)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (811)
..|.|.|.|||+| ++ ..+..++.|+++..|| .+.+.|.|||.++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHH----------------------
T ss_conf 9984899996689---77-8999999999957689--869999989998678999999----------------------
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 01221000111255782249999999999999999998888752058633423468998999987889742101114799
Q 003541 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (811)
Q Consensus 427 e~YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~~g 506 (811)
+.+
T Consensus 55 ---------------------------------------~~~-------------------------------------- 57 (240)
T 3bcv_A 55 ---------------------------------------YAA-------------------------------------- 57 (240)
T ss_dssp ---------------------------------------HHH--------------------------------------
T ss_pred ---------------------------------------HHH--------------------------------------
T ss_conf ---------------------------------------996--------------------------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8788899878089982458999876631114479998502578998899944999889279999986311378
Q 003541 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (811)
Q Consensus 507 ~~d~~g~~lP~LvYVsReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcff~Dp 579 (811)
..|++.++..+ ...+++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+-.|.++
T Consensus 58 -------~~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 58 -------QYPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp -------HCSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred -------HCCCEEEEECC------CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf -------58978999889------99949999999997----68999999879875-8889999999999846
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=1.00 E-value=1 Score=78.94 Aligned_cols=164 Identities=15% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 71159982789999987999999999882989999828999159986020798654599964437567750799899101
Q 003541 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (811)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vv~nTVlSilalDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (811)
|.|.|.||||| |. ..+..+|.|+++..|| ....++|.|||.++-|.+.+.+..
T Consensus 48 ~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~~~~~~---------------------- 100 (329)
T 3ckj_A 48 RTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIRAVAAG---------------------- 100 (329)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHHHHHTT----------------------
T ss_pred CCEEEEEEECC---CH-HHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHH----------------------
T ss_conf 96899996078---77-8999999999985079-983899996999845999999853----------------------
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 22100011125578224999999999999999999888875205863342346899899998788974210111479987
Q 003541 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (811)
Q Consensus 429 YFs~k~d~~k~k~~pefv~err~mKreYEe~k~rIe~L~~k~~~~~~~gw~m~dgt~wpg~~~rdHpgiIqV~l~~~g~~ 508 (811)
T Consensus 101 -------------------------------------------------------------------------------- 100 (329)
T 3ckj_A 101 -------------------------------------------------------------------------------- 100 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEEEEE-------CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-HCCCC
Q ss_conf 88899878089982-------45899987663111447999850257899889994499988927999998631-13789
Q 003541 509 DAEGNELPRLVYVS-------REKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPN 580 (811)
Q Consensus 509 d~~g~~lP~LvYVs-------ReKrpg~~hh~KAGALN~lLrvSavltngpfILilDADhyvpnp~fLr~amcf-f~Dp~ 580 (811)
..++. .++..| |++|+|.++.. ++|+||+.+|+|.....|++|.+.+-. +.+|
T Consensus 101 ---------~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~- 161 (329)
T 3ckj_A 101 ---------ARVVSREQALPEVPIRPG-----KGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD- 161 (329)
T ss_dssp ---------CEEEEHHHHCTTSCCCCS-----HHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCS-
T ss_pred ---------HHHCCCEEEECCCCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-
T ss_conf ---------231243023114778888-----99999999996----78999999899888769689999999998599-
Q ss_pred CCCCEEEECCCCCCCC---------CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHCCC
Q ss_conf 9963489814830169---------999651100246788564011357786321242023205310599
Q 003541 581 LGKHVCYVQFPQRFDG---------IDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (811)
Q Consensus 581 ~g~~VafVQtPQrF~N---------~d~~D~~~nq~~vFfdviq~GrDg~qgp~~~GTgcv~RR~ALyG~ 641 (811)
++++|+....... .............-.-....-.+-.....+.|...++||++|..+
T Consensus 162 ---~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rr~~l~~i 228 (329)
T 3ckj_A 162 ---GVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp ---SCCEEEEEEECC---------------CHHHHHTHHHHHHHHCGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred ---CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHC
T ss_conf ---9429998730531477643334456887010253779999864523265577734455669999757
Done!