Query 003542
Match_columns 811
No_of_seqs 492 out of 2907
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:00:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003542.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1591-1594//hhsearch_pdb/003542hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 403.9 17.7 243 215-486 23-276 (350)
2 4fie_A Serine/threonine-protei 1.0 1 1 394.4 23.3 239 216-486 151-400 (423)
3 4aoj_A High affinity nerve gro 1.0 1 1 394.3 26.2 256 215-493 40-319 (329)
4 4asz_A BDNF/NT-3 growth factor 1.0 1 1 394.0 23.1 255 216-493 13-289 (299)
5 4fih_A Serine/threonine-protei 1.0 1 1 392.8 23.0 239 216-486 74-323 (346)
6 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 391.8 21.7 241 216-486 32-284 (311)
7 4g3f_A NF-kappa-beta-inducing 1.0 1 1 391.1 20.5 252 216-493 58-316 (336)
8 4gt4_A Tyrosine-protein kinase 1.0 1 1 390.8 25.1 253 215-490 25-303 (308)
9 4ase_A Vascular endothelial gr 1.0 1 1 385.6 22.7 258 215-493 63-347 (353)
10 3omv_A RAF proto-oncogene seri 1.0 1 1 384.9 27.2 251 215-492 35-299 (307)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=403.86 Aligned_cols=243 Identities=25% Similarity=0.428 Sum_probs=207.7
Q ss_pred HCCEEEEEEECCCC---EEEEEE-ECCCEEEEEEECC------CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 40568953416434---289999-9698999998064------2789999999998089985012520388267986999
Q 003542 215 LKKLMVRRRLGASS---QFKEIQ-WLGDSFVLRHFYG------ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFL 284 (811)
Q Consensus 215 ~k~~~i~~~lG~G~---vyk~v~-~~g~~vAIK~l~~------~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~L 284 (811)
+++|++.+.||+|+ ||++.. .+|+.||||++.. ..+.+.+|+.+|+.|+|||||++++.+ ++.+.+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~--~~~~~~yi 100 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF--EENGSLYI 100 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE--EETTEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--EECCEEEE
T ss_conf 1255884797027793999999889998999999865878979999999999999877998989199999--98999999
Q ss_pred EEECCC-CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCC
Q ss_conf 984679-9988999986077788999978999999999999999986994202689994898126788731599910343
Q 003542 285 VMELMS-KDLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGL 363 (811)
Q Consensus 285 VmEy~~-gsL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGL 363 (811)
|||||+ |+|.+++... ....+++..++.|+.||+.||.|||+++|+||||||+|||++.+| .+||+|||+
T Consensus 101 VmEy~~gg~L~~~i~~~----~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g-----~vKl~DFGl 171 (350)
T 4b9d_A 101 VMDYCEGGDLFKRINAQ----KGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG-----TVQLGDFGI 171 (350)
T ss_dssp EEECCTTCBHHHHHHHT----TTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTC-----CEEECSTTE
T ss_pred EEECCCCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCC-----CEEECCCCC
T ss_conf 99488998399999973----899997899999999999999999989915135978997987899-----989764652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 21123568899999999888999876678357542018898888999953532153357999861999998885113788
Q 003542 364 STARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKM 443 (811)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i 443 (811)
|+...... ......+||+.|||||++.+. .|+.++||||||||+|||++|++||.+.+. ..+
T Consensus 172 a~~~~~~~-------~~~~~~~GT~~YmAPE~l~~~---------~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~ 233 (350)
T 4b9d_A 172 ARVLNSTV-------ELARACIGTPYYLSPEICENK---------PYNNKSDIWALGCVLYELCTLKHAFEAGSM--KNL 233 (350)
T ss_dssp ESCCCHHH-------HHHHHHHSCCTTCCHHHHTTC---------CCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHH
T ss_pred CEEECCCC-------CCCCCCCCCCCCCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCH--HHH
T ss_conf 14406885-------410145788360399998799---------989599999999999999978799899699--999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9988718999999999178799874101589999999999999
Q 003542 444 TKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICR 486 (811)
Q Consensus 444 ~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~ 486 (811)
...+..+..++.+..++.++.+||.+||+.||.+|||+.++++
T Consensus 234 ~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 234 VLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999808999997557999999999985589667908999963
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.43 Aligned_cols=239 Identities=21% Similarity=0.343 Sum_probs=202.0
Q ss_pred CCEEEEEEECCCC---EEEEEE-ECCCEEEEEEEC----CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 0568953416434---289999-969899999806----42789999999998089985012520388267986999984
Q 003542 216 KKLMVRRRLGASS---QFKEIQ-WLGDSFVLRHFY----GELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFLVME 287 (811)
Q Consensus 216 k~~~i~~~lG~G~---vyk~v~-~~g~~vAIK~l~----~~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~LVmE 287 (811)
+.|++.++||+|+ ||++.. .+|+.||||++. ...+.+.+|+.+|+.++|||||++++.|. +.+.+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~--~~~~~~iVmE 228 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL--VGDELWVVME 228 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE--ETTEEEEEEE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCEEEEEEE
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999--8999999996
Q ss_pred CCCC-CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCCCCC
Q ss_conf 6799-988999986077788999978999999999999999986994202689994898126788731599910343211
Q 003542 288 LMSK-DLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGLSTA 366 (811)
Q Consensus 288 y~~g-sL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGLa~~ 366 (811)
||+| +|.+++.. ..+++..+..|+.||+.||.|||+++|+||||||+||||+.+| ++||+|||+|+.
T Consensus 229 y~~gG~L~~~i~~-------~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g-----~vKl~DFGla~~ 296 (423)
T 4fie_A 229 FLEGGALTDIVTH-------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG-----RVKLSDFGFCAQ 296 (423)
T ss_dssp CCTTEEHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTC-----CEEECCCTTCEE
T ss_pred CCCCCCHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCC-----CEEEECCCCCEE
T ss_conf 9899828988761-------6989999999999999999999988904465787778985899-----989803726547
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 23568899999999888999876678357542018898888999953532153357999861999998885113788998
Q 003542 367 RTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKMTKN 446 (811)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i~~~ 446 (811)
..... ......+||+.|||||++.+. .|+.++|||||||++|||++|++||.+.. .......
T Consensus 297 ~~~~~-------~~~~~~~GTp~YmAPEvl~~~---------~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~ 358 (423)
T 4fie_A 297 VSKEV-------PRRKSLVGTPYWMAPELISRL---------PYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKM 358 (423)
T ss_dssp CCSSC-------CCBCCCEECTTTCCHHHHTTC---------CBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHH
T ss_pred CCCCC-------CCCCCCCCCCCCCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHH
T ss_conf 77887-------643466647472799997799---------99968999999999999997879989869--9999999
Q ss_pred HHHCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 87189999--99999178799874101589999999999999
Q 003542 447 IRAGERPL--FPSGSPKYLVNLTKKCWHTNPSQRPSFSSICR 486 (811)
Q Consensus 447 i~~~~~~~--~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~ 486 (811)
+.....+. .+..++..+.+||.+||..||.+|||+.++++
T Consensus 359 i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 359 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 972799887650129999999999986789568909999960
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.31 Aligned_cols=256 Identities=21% Similarity=0.370 Sum_probs=212.2
Q ss_pred HCCEEEEEEECCCC---EEEEEE------ECCCEEEEEEECC----CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCE
Q ss_conf 40568953416434---289999------9698999998064----2789999999998089985012520388267986
Q 003542 215 LKKLMVRRRLGASS---QFKEIQ------WLGDSFVLRHFYG----ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKE 281 (811)
Q Consensus 215 ~k~~~i~~~lG~G~---vyk~v~------~~g~~vAIK~l~~----~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~ 281 (811)
..++.+.++||+|+ ||++.. .++..||||++.. ..+.|.+|+++|++++|||||++++.+ .+...
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~--~~~~~ 117 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVC--TEGRP 117 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEE--CSSSS
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--EECCE
T ss_conf 8992887797147784899899878665778969999997757979999999999999858998999698999--98998
Q ss_pred EEEEEECCC-CCHHHHHHHHHCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCC
Q ss_conf 999984679-9988999986077---------788999978999999999999999986994202689994898126788
Q 003542 282 FFLVMELMS-KDLSCYMRETFGS---------RRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSME 351 (811)
Q Consensus 282 ~~LVmEy~~-gsL~~~L~~~~~~---------~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d 351 (811)
+|||||||+ |+|.+++...... ....++++..++.|+.||+.||.|||+++|+||||||+|||++.++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~-- 195 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGL-- 195 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTT--
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHEEECCCC--
T ss_conf 999998279993999998607541001221124578899999999999999999998408842266667648988999--
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHH-CC
Q ss_conf 73159991034321123568899999999888999876678357542018898888999953532153357999861-99
Q 003542 352 GYFHVKVSGFGLSTARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLT-GK 430 (811)
Q Consensus 352 ~~~~vKL~DFGLa~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLt-Gk 430 (811)
.+||+|||+|+....... ........||+.|||||++.+. .|+.++|||||||+||||+| |+
T Consensus 196 ---~~Ki~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~---------~~~~~sDvwS~Gvvl~Ellt~G~ 258 (329)
T 4aoj_A 196 ---VVKIGDFGMSRDIYSTDY-----YRVGGRTMLPIRWMPPESILYR---------KFTTESDVWSFGVVLWEIFTYGK 258 (329)
T ss_dssp ---EEEECCCC---------------------CCCCGGGCCHHHHTTC---------CCCHHHHHHHHHHHHHHHHTTSC
T ss_pred ---CEEECCCCCCEECCCCCC-----CEECCCCCCCCCCCCHHHHCCC---------CCCCCCCCCCHHHHHHHHHCCCC
T ss_conf ---689766603336567875-----3004764556566582654479---------99966300105789999982899
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999888511378899887189999999991787998741015899999999999999999999
Q 003542 431 VPFEDGHLQGDKMTKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRYIKK 493 (811)
Q Consensus 431 ~PF~~~~~~~~~i~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~i~~ 493 (811)
.||.+.. ..++...+..+.++..|..+|+++.+|+.+||+.||.+|||+.+|++.|+.+..
T Consensus 259 ~Pf~~~~--~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 259 QPWYQLS--NTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp CTTCSSC--HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 9999989--999999998089899864463999999999747596579299999999998745
No 4
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=394.02 Aligned_cols=255 Identities=23% Similarity=0.397 Sum_probs=212.3
Q ss_pred CCEEEEEEECCCC---EEEEEEE------CCCEEEEEEECC----CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
Q ss_conf 0568953416434---2899999------698999998064----27899999999980899850125203882679869
Q 003542 216 KKLMVRRRLGASS---QFKEIQW------LGDSFVLRHFYG----ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEF 282 (811)
Q Consensus 216 k~~~i~~~lG~G~---vyk~v~~------~g~~vAIK~l~~----~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~ 282 (811)
.+|.+.+.||+|+ ||++... ++..||||++.. ..+.|.+|+++|++++|||||++++.+ .+.+.+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~--~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVC--VEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE--CSSSSE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--EECCEE
T ss_conf 892982498207882999999877666778879999996777858999999999999858998886287999--569989
Q ss_pred EEEEECCC-CCHHHHHHHHH-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCC
Q ss_conf 99984679-99889999860-------77788999978999999999999999986994202689994898126788731
Q 003542 283 FLVMELMS-KDLSCYMRETF-------GSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYF 354 (811)
Q Consensus 283 ~LVmEy~~-gsL~~~L~~~~-------~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~ 354 (811)
|||||||+ |+|.++|.... .......+++..+..++.||+.||.|||+++|+||||||+|||++.++
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~----- 165 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL----- 165 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG-----
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----
T ss_conf 999985899968999986086421112357778899999999999999999999759904676577638987998-----
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCC
Q ss_conf 59991034321123568899999999888999876678357542018898888999953532153357999861-99999
Q 003542 355 HVKVSGFGLSTARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLT-GKVPF 433 (811)
Q Consensus 355 ~vKL~DFGLa~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLt-Gk~PF 433 (811)
.+||+|||+|+....... ........||+.|||||++.+. .|+.++|||||||+||||+| |+.||
T Consensus 166 ~~Ki~DFGla~~~~~~~~-----~~~~~~~~gt~~ymAPE~~~~~---------~~~~k~DVwS~Gvvl~Ellt~G~~Pf 231 (299)
T 4asz_A 166 LVKIGDFGMSRDVYSTDY-----YRVGGHTMLPIRWMPPESIMYR---------KFTTESDVWSLGVVLWEIFTYGKQPW 231 (299)
T ss_dssp CEEECCCSCHHHHTGGGC-----EEETTTEEECGGGCCHHHHHHC---------CCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CEEECCCCCCEECCCCCC-----EEECCCEECCHHHCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 689887300100678874-----1664751347010388987079---------99703667788999999980899999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888511378899887189999999991787998741015899999999999999999999
Q 003542 434 EDGHLQGDKMTKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRYIKK 493 (811)
Q Consensus 434 ~~~~~~~~~i~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~i~~ 493 (811)
.+.+ ..++...+..+.++..|..+|+.+.+||.+||+.||.+|||+.+|...|+.+.+
T Consensus 232 ~~~~--~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 232 YQLS--NNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp TTSC--HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 9989--999999998089889974143999999999768796689299999999987776
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=392.85 Aligned_cols=239 Identities=21% Similarity=0.346 Sum_probs=201.3
Q ss_pred CCEEEEEEECCCC---EEEEEE-ECCCEEEEEEECC----CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 0568953416434---289999-9698999998064----2789999999998089985012520388267986999984
Q 003542 216 KKLMVRRRLGASS---QFKEIQ-WLGDSFVLRHFYG----ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFLVME 287 (811)
Q Consensus 216 k~~~i~~~lG~G~---vyk~v~-~~g~~vAIK~l~~----~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~LVmE 287 (811)
..|++.++||+|+ ||++.. .+|+.||||++.. ..+.+.+|+.+|+.++|||||++++.|. +.+.+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~--~~~~~~ivmE 151 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL--VGDELWVVME 151 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE--ETTEEEEEEC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCEEEEEEE
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999--8999999996
Q ss_pred CCCC-CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCCCCC
Q ss_conf 6799-988999986077788999978999999999999999986994202689994898126788731599910343211
Q 003542 288 LMSK-DLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGLSTA 366 (811)
Q Consensus 288 y~~g-sL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGLa~~ 366 (811)
||+| +|.+++.. ..+++..+..|+.||+.||.|||+++|+||||||+|||++.+| ++||+|||+|+.
T Consensus 152 y~~gg~L~~~l~~-------~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g-----~vKl~DFGla~~ 219 (346)
T 4fih_A 152 FLEGGALTDIVTH-------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG-----RVKLSDFGFCAQ 219 (346)
T ss_dssp CCTTEEHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC-----CEEECCCTTCEE
T ss_pred CCCCCCHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----CEEEECCCCCEE
T ss_conf 9899808999871-------8989999999999999999999988835562788997887999-----889902757536
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 23568899999999888999876678357542018898888999953532153357999861999998885113788998
Q 003542 367 RTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKMTKN 446 (811)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i~~~ 446 (811)
..... ......+||+.|||||++.+. .|+.++||||||||+|||++|++||.+.+ .......
T Consensus 220 ~~~~~-------~~~~~~~GTp~YmAPEvl~~~---------~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~ 281 (346)
T 4fih_A 220 VSKEV-------PRRKSLVGTPYWMAPELISRL---------PYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKM 281 (346)
T ss_dssp CCSSS-------CCBCCCCSCGGGCCHHHHTTC---------CBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHH
T ss_pred CCCCC-------CCCCCCCCCCCCCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHH
T ss_conf 67887-------753465627582799997799---------99968999999999999997879989859--9999999
Q ss_pred HHHCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 871899999--9999178799874101589999999999999
Q 003542 447 IRAGERPLF--PSGSPKYLVNLTKKCWHTNPSQRPSFSSICR 486 (811)
Q Consensus 447 i~~~~~~~~--p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~ 486 (811)
+.....+.+ +..+++++.+||.+||..||.+|||+.++++
T Consensus 282 i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 282 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 971799988750229999999999986799568909999960
No 6
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=391.76 Aligned_cols=241 Identities=20% Similarity=0.360 Sum_probs=206.2
Q ss_pred CCEEEEEEECCCC---EEEEEE-ECCCEEEEEEECC-------CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 0568953416434---289999-9698999998064-------2789999999998089985012520388267986999
Q 003542 216 KKLMVRRRLGASS---QFKEIQ-WLGDSFVLRHFYG-------ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFL 284 (811)
Q Consensus 216 k~~~i~~~lG~G~---vyk~v~-~~g~~vAIK~l~~-------~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~L 284 (811)
.+|++.+.||+|+ ||.+.. .+|+.||+|++.. ..+.+.+|+++|+.++|||||++++.| ++.+.+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~--~~~~~~yi 109 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF--QDDEKLYF 109 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE--ECSSEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE--EECCEEEE
T ss_conf 2368988983164849999999999989999998888877978999999999999867998989199999--73898999
Q ss_pred EEECCCC-CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCC
Q ss_conf 9846799-988999986077788999978999999999999999986994202689994898126788731599910343
Q 003542 285 VMELMSK-DLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGL 363 (811)
Q Consensus 285 VmEy~~g-sL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGL 363 (811)
|||||+| +|.+++... ..+++..+..|+.||+.||.|||+++|+||||||+|||++.++ ++||+|||+
T Consensus 110 vmEy~~gG~L~~~i~~~------~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g-----~vKl~DFGl 178 (311)
T 4aw0_A 110 GLSYAKNGELLKYIRKI------GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM-----HIQITDFGT 178 (311)
T ss_dssp EECCCTTEEHHHHHHHH------SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS-----CEEECCCTT
T ss_pred EEECCCCCCHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----CEEEEECCC
T ss_conf 99648998999999874------9999999999999999999999988782687878996985898-----889987687
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 21123568899999999888999876678357542018898888999953532153357999861999998885113788
Q 003542 364 STARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKM 443 (811)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i 443 (811)
|+....... .....+.+||+.|||||++.+. .|+.++||||+||++|+|++|++||.+.+ ...+
T Consensus 179 a~~~~~~~~-----~~~~~~~~GTp~YmAPEvl~~~---------~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~ 242 (311)
T 4aw0_A 179 AKVLSPESK-----QARANSFVGTAQYVSPELLTEK---------SACKSSDLWALGCIIYQLVAGLPPFRAGN--EGLI 242 (311)
T ss_dssp CEECCTTTT-----CCCBCCCCSCGGGCCHHHHHHS---------CBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHH
T ss_pred CEECCCCCC-----CCCCCCCCCCCCCCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCC--HHHH
T ss_conf 502577877-----6543675568030799897689---------99968989989999999974989989979--9999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9988718999999999178799874101589999999999999
Q 003542 444 TKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICR 486 (811)
Q Consensus 444 ~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~ 486 (811)
...+..+. +.+|...++++.+||.+||..||.+|||+.+++.
T Consensus 243 ~~~i~~~~-~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 243 FAKIIKLE-YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp HHHHHHTC-CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred HHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCC
T ss_conf 99997199-9999656999999999976289757809679758
No 7
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=391.08 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=205.0
Q ss_pred CCEEEEEEECCCC---EEEEEE-ECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCC-
Q ss_conf 0568953416434---289999-96989999980642789999999998089985012520388267986999984679-
Q 003542 216 KKLMVRRRLGASS---QFKEIQ-WLGDSFVLRHFYGELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFLVMELMS- 290 (811)
Q Consensus 216 k~~~i~~~lG~G~---vyk~v~-~~g~~vAIK~l~~~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~LVmEy~~- 290 (811)
..|.+.++||+|+ ||++.. .+|+.||||++..+. ...+|+.+|+.++|||||++++.+ ++.+.+|||||||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-~~~~E~~il~~l~HpnIV~l~~~~--~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-FRVEELVACAGLSSPRIVPLYGAV--REGPWVNIFMELLEG 134 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-CCTHHHHTTTTCCCTTBCCEEEEE--EETTEEEEEECCCTT
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-HHHHHHHHHHHCCCCCCCCEEEEE--EECCEEEEEEECCCC
T ss_conf 35176868513878099999988999899999978888-699999999857998999399999--989999999966599
Q ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 99889999860777889999789999999999999999869942026899948981267887315999103432112356
Q 003542 291 KDLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGLSTARTYA 370 (811)
Q Consensus 291 gsL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGLa~~~~~~ 370 (811)
|+|.+++... ..|++..+..|+.||+.||.|||+++|+||||||+|||++.+|. ++||+|||+|+.....
T Consensus 135 g~L~~~l~~~------~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~----~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 135 GSLGQLIKQM------GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGS----RAALCDFGHALCLQPD 204 (336)
T ss_dssp CBHHHHHHHH------SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSC----CEEECCCTTCEEC---
T ss_pred CCHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECCCC----EEEEEECCCCEECCCC
T ss_conf 8699999876------99999999999999999999999889042616778879958999----7999627877685678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 88999999998889998766783575420188988889999535321533579998619999988851137889988718
Q 003542 371 SRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKMTKNIRAG 450 (811)
Q Consensus 371 ~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i~~~i~~~ 450 (811)
..... .......+||+.|||||++.+. .|+.++|||||||++|||++|++||.+.... .+...+...
T Consensus 205 ~~~~~--~~~~~~~~GT~~YmAPE~~~~~---------~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~~ 271 (336)
T 4g3f_A 205 GLGKS--LLTGDYIPGTETHMAPEVVMGK---------PCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCLKIASE 271 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTC---------CCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHHHHHHS
T ss_pred CCCCC--EECCCCCCCCCCCCCHHHHCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHCC
T ss_conf 76540--2217854558020089998899---------9890899999999999999786998998999--999999808
Q ss_pred CCC--CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999--9999991787998741015899999999999999999999
Q 003542 451 ERP--LFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRYIKK 493 (811)
Q Consensus 451 ~~~--~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~i~~ 493 (811)
..+ .+|..+++.+.+||.+||+.||.+|||+.++++.|.....
T Consensus 272 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 272 PPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp CCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 998002586679999999999762897689599999999999975
No 8
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=390.76 Aligned_cols=253 Identities=24% Similarity=0.394 Sum_probs=210.2
Q ss_pred HCCEEEEEEECCCC---EEEEEE------ECCCEEEEEEECC-----CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 40568953416434---289999------9698999998064-----278999999999808998501252038826798
Q 003542 215 LKKLMVRRRLGASS---QFKEIQ------WLGDSFVLRHFYG-----ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKK 280 (811)
Q Consensus 215 ~k~~~i~~~lG~G~---vyk~v~------~~g~~vAIK~l~~-----~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~ 280 (811)
...+++.++||+|+ ||++.. .+++.||||.+.. ..+.|.+|+.+|++++|||||++++.+ .+..
T Consensus 25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~--~~~~ 102 (308)
T 4gt4_A 25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVV--TKDQ 102 (308)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEE--CSSS
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE--EECC
T ss_conf 88885866913588848999998577658888699999988014968999999999999858998987736499--8899
Q ss_pred EEEEEEECCC-CCHHHHHHHHHC----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCC
Q ss_conf 6999984679-998899998607----------77889999789999999999999999869942026899948981267
Q 003542 281 EFFLVMELMS-KDLSCYMRETFG----------SRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARS 349 (811)
Q Consensus 281 ~~~LVmEy~~-gsL~~~L~~~~~----------~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g 349 (811)
.+|||||||+ |+|.++|..... ......+++..+..++.||+.||.|||+++|+||||||+|||++.++
T Consensus 103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
T ss_conf 88999981899949999986276543333221111246899999999999999999999868997787362306887999
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHH-
Q ss_conf 8873159991034321123568899999999888999876678357542018898888999953532153357999861-
Q 003542 350 MEGYFHVKVSGFGLSTARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLT- 428 (811)
Q Consensus 350 ~d~~~~vKL~DFGLa~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLt- 428 (811)
.+||+|||+|+....... ........||+.|||||++.+. .|+.++|||||||+||||+|
T Consensus 183 -----~~Ki~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~---------~~s~ksDVwSfGvvl~El~t~ 243 (308)
T 4gt4_A 183 -----NVKISDLGLFREVYAADY-----YKLLGNSLLPIRWMAPEAIMYG---------KFSIDSDIWSYGVVLWEVFSY 243 (308)
T ss_dssp -----CEEECCSCCBCGGGGGGC-----BCSSSSSCBCGGGCCHHHHHHC---------CCCHHHHHHHHHHHHHHHHTT
T ss_pred -----CEEECCCCCCEECCCCCC-----EEEECCCCCCCCCCCHHHHHCC---------CCCCCCHHHHHHHHHHHHHHC
T ss_conf -----789887602023367774-----0473451257765698998279---------999630001579999999968
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999888511378899887189999999991787998741015899999999999999999
Q 003542 429 GKVPFEDGHLQGDKMTKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRY 490 (811)
Q Consensus 429 Gk~PF~~~~~~~~~i~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~ 490 (811)
|+.||.+.. ...+...+..+.+++.|..+|..+.+|+.+||+.||.+||+|.+|++.|+.
T Consensus 244 g~~Pf~~~~--~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 244 GLQPYCGYS--NQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp TCCTTTTCC--HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CCCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 999999989--999999998199899962036999999999758796579299999999985
No 9
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=385.58 Aligned_cols=258 Identities=24% Similarity=0.475 Sum_probs=210.6
Q ss_pred HCCEEEEEEECCCC---EEEEEEE------CCCEEEEEEECC-----CHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCC
Q ss_conf 40568953416434---2899999------698999998064-----27899999999980899-850125203882679
Q 003542 215 LKKLMVRRRLGASS---QFKEIQW------LGDSFVLRHFYG-----ELESLNAEISTMLSLSH-PNIVQYLCGFCDEEK 279 (811)
Q Consensus 215 ~k~~~i~~~lG~G~---vyk~v~~------~g~~vAIK~l~~-----~~~~~~~Ei~iL~~L~H-pNIV~l~~~~~~e~~ 279 (811)
..+|++.+.||+|+ ||++... .++.||+|.+.. +...|.+|+.+|.+++| ||||++++.+ .+..
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~-~~~~ 141 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC-TKPG 141 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-CCTT
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-EECC
T ss_conf 799598209821789599999986888544775999999762358689999999999999757998487788999-9469
Q ss_pred CEEEEEEECCC-CCHHHHHHHHHCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECC
Q ss_conf 86999984679-9988999986077----------788999978999999999999999986994202689994898126
Q 003542 280 KEFFLVMELMS-KDLSCYMRETFGS----------RRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKAR 348 (811)
Q Consensus 280 ~~~~LVmEy~~-gsL~~~L~~~~~~----------~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~ 348 (811)
..+|||||||+ |+|.++|+..... .....+++..+..|+.||+.||.|||+++|+||||||+|||++.+
T Consensus 142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~ 221 (353)
T 4ase_A 142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK 221 (353)
T ss_dssp SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEECCC
T ss_conf 77999998389897999997435666543334101103568999999999999999876762784357467211305799
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHH
Q ss_conf 78873159991034321123568899999999888999876678357542018898888999953532153357999861
Q 003542 349 SMEGYFHVKVSGFGLSTARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLT 428 (811)
Q Consensus 349 g~d~~~~vKL~DFGLa~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLt 428 (811)
+ .+||+|||+|+....... ........||+.|||||++.+. .|+.++|||||||+||||+|
T Consensus 222 ~-----~vKi~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~---------~y~~ksDVwS~Gv~l~El~t 282 (353)
T 4ase_A 222 N-----VVKICDFGLARDIYKDPD-----YVRKGDARLPLKWMAPETIFDR---------VYTIQSDVWSFGVLLWEIFS 282 (353)
T ss_dssp G-----CEEECCCGGGSCTTTCTT-----SEEETTEEECGGGCCHHHHHHC---------CCCHHHHHHHHHHHHHHHTT
T ss_pred C-----CEEECCCHHHHHCCCCCC-----CEEECCCCCCCCCCCHHHHHCC---------CCCCCCCEEEHHHHHHHHHH
T ss_conf 9-----789796543222456887-----2032540146665698999469---------99975537406899999981
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -99999888511378899887189999999991787998741015899999999999999999999
Q 003542 429 -GKVPFEDGHLQGDKMTKNIRAGERPLFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRYIKK 493 (811)
Q Consensus 429 -Gk~PF~~~~~~~~~i~~~i~~~~~~~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~i~~ 493 (811)
|+.||.+.... ..+...+..+.++..|..+++++.+||.+||+.||.+|||+.+|+++|..+..
T Consensus 283 ~G~~Pf~~~~~~-~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 283 LGASPYPGVKID-EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp TSCCSSTTCCCS-HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999998989-99999997389888886578999999999768696679399999999999998
No 10
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=384.91 Aligned_cols=251 Identities=25% Similarity=0.484 Sum_probs=203.0
Q ss_pred HCCEEEEEEECCCC---EEEEEEECCCEEEEEEECC------CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 40568953416434---2899999698999998064------27899999999980899850125203882679869999
Q 003542 215 LKKLMVRRRLGASS---QFKEIQWLGDSFVLRHFYG------ELESLNAEISTMLSLSHPNIVQYLCGFCDEEKKEFFLV 285 (811)
Q Consensus 215 ~k~~~i~~~lG~G~---vyk~v~~~g~~vAIK~l~~------~~~~~~~Ei~iL~~L~HpNIV~l~~~~~~e~~~~~~LV 285 (811)
..++.+.++||.|+ ||++. ....||||+++. ..+.|.+|+.+|++++|||||++++ ++.+ +.+|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~--~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g-~~~~--~~~~iV 109 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGK--WHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMG-YMTK--DNLAIV 109 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEE--SSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEE-EECS--SSCEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEE--ECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEC--CEEEEE
T ss_conf 7994984498208886899999--8996899999726899999999999999998589988746999-9978--958999
Q ss_pred EECCC-CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCEEEEEECCCC
Q ss_conf 84679-99889999860777889999789999999999999999869942026899948981267887315999103432
Q 003542 286 MELMS-KDLSCYMRETFGSRRRNSFSLPVVVDIMLQIARGMEFLHAQKIYHGELNPSNIYLKARSMEGYFHVKVSGFGLS 364 (811)
Q Consensus 286 mEy~~-gsL~~~L~~~~~~~~~~~ls~~~i~~i~~QIa~gL~yLHs~gIvHRDLKPsNILI~~~g~d~~~~vKL~DFGLa 364 (811)
||||+ |+|.++|... ...+++..+..|+.||+.||.|||+++|+||||||+|||++.++ .+||+|||+|
T Consensus 110 mEy~~gGsL~~~l~~~-----~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~-----~~Ki~DFGla 179 (307)
T 3omv_A 110 TQWCEGSSLYKHLHVQ-----ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGL-----TVKIGDFGLA 179 (307)
T ss_dssp EECCSSCBHHHHHHTS-----CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTE-----EEEECCCSSC
T ss_pred EECCCCCCHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----CEEEEECCCC
T ss_conf 9748998788987524-----89999999999999999999999779952785578997888999-----0899441575
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 11235688999999998889998766783575420188988889999535321533579998619999988851137889
Q 003542 365 TARTYASRNTPPASPQNQTAPNPYIWYAPEVLAEQEGTGSTSTSKCSEKADVYSFGMLCFELLTGKVPFEDGHLQGDKMT 444 (811)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~~~~~s~ksDIwSlGvILyELLtGk~PF~~~~~~~~~i~ 444 (811)
+....... .......+||+.|||||++.+.. .+.|+.++|||||||+||||+||+.||.+.... ..+.
T Consensus 180 ~~~~~~~~-----~~~~~~~~GT~~ymAPE~l~~~~------~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~-~~~~ 247 (307)
T 3omv_A 180 TVKSRWSG-----SQQVEQPTGSVLWMAPEVIRMQD------NNPFSFQSDVYSYGIVLYELMTGELPYSHINNR-DQII 247 (307)
T ss_dssp BC-----------------CCCCTTSCCHHHHHCCS------SCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-HHHH
T ss_pred EECCCCCC-----CEEECCCCCCCCCCCHHHHHCCC------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHH
T ss_conf 42466776-----40315644687724987861468------998786877572899999999788998999969-9999
Q ss_pred HHHHHCCC-C---CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98871899-9---999999178799874101589999999999999999999
Q 003542 445 KNIRAGER-P---LFPSGSPKYLVNLTKKCWHTNPSQRPSFSSICRILRYIK 492 (811)
Q Consensus 445 ~~i~~~~~-~---~~p~~~p~~l~~LI~~cL~~DP~~RPS~~eIl~~L~~i~ 492 (811)
..+..+.. | ..+..+|..+.+||.+||+.||.+|||+.+|+..|+.+.
T Consensus 248 ~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 248 FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp HHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 9996588888720035445699999999975779768909899999999974
Done!