BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003543
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 57/294 (19%)
Query: 198 VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFLYSIFFL 257
+ + V+ ILNKLTP+ F+ L Q+ + T + LK
Sbjct: 11 LFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLK------------------------ 46
Query: 258 LKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDL-NEKLPPFPSDEPGGKDITFKRI 316
GVI+L+F+KA+ EP+F YA C L K+P +D+PG + F+++
Sbjct: 47 ----------GVIDLVFEKAIDEPSFSVAYANXCRCLVTLKVPX--ADKPGNT-VNFRKL 93
Query: 317 LLNHCQEAFEG--ADN-----TRAEIRQMTAPEQEMERMDQ----ERLVKLRTLGNIRLI 365
LLN CQ+ FE AD+ + E+ +APE+ D+ + + R++GNI+ I
Sbjct: 94 LLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFI 153
Query: 366 GELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD-ENPKSRRVN 424
GEL K K + E I H V +LL+N EE++E +C+ TIGK LD E K R
Sbjct: 154 GELFKLKXLTEAIXHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPR--X 206
Query: 425 DVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 478
D YF++ +++ + R+RF + DV+DLR NWV RR + KTI +IH EA
Sbjct: 207 DQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
Length = 284
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 51/289 (17%)
Query: 189 RGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVI 248
+ L +KD V + +K +LNKLT E FD + +++ I +++ L
Sbjct: 27 KTELLDKDEVERKMKSLLNKLTLEMFDAISSEILA-------IANISVWETNGETL---- 75
Query: 249 IFLYSIFFLLKLRSLFAFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG- 307
+ VIE IF KA EP + MYA LC + ++L P +DE
Sbjct: 76 ------------------KAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNE 117
Query: 308 GKDITFKRILLNH----CQEAFEGADNTRAEIRQMTAPEQEMERMDQERL----VKLRTL 359
GK T +++L++ C F+ + + P E E M +E K R L
Sbjct: 118 GK--TGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTP-LEPEMMSEEYYAAASAKRRGL 174
Query: 360 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENP- 418
G +R IG L + ++ K++ + L++ D P+EE +E++ + NT+G+Q + +
Sbjct: 175 GLVRFIGFLYRLNLLTGKMMFECFRRLMK-DLTDSPSEETLESVVELLNTVGEQFETDSF 233
Query: 419 -------KSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN-NW 459
+ ++ D F L + +++ R++F + D+ +LR + NW
Sbjct: 234 RTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNW 282
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 645 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQL 704
+L KK+ +++EEY + + EA+QCV+EL +P+ V+ + LE+ E + QL
Sbjct: 9 ELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQL 68
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMV 748
L LL L+T G L +D+ ID+P E+V
Sbjct: 69 LHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELV 112
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 67
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 6 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 65
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 66 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 101
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 275
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 276 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 311
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 641 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEP 700
L+ K +++EYF +E + + +L V A++LALE E
Sbjct: 48 LDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREM 107
Query: 701 VIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 752
+LL L V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 108 TSKLLSDLCG-TVMSTNDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 158
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDL 67
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 179 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDL 238
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 239 LKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHS 274
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLL 705
K +++EYF +E + + +L V A++LALE E +LL
Sbjct: 16 FEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLL 75
Query: 706 EFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 752
L V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 76 SDLCG-TVMSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 121
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 14 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 73
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 74 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 109
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI + LE + ++ L
Sbjct: 9 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 68
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 69 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 104
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
pdb|2IOL|B Chain B, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
Length = 150
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI LE + ++ L
Sbjct: 8 LVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXILDL 67
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQXKRGYERIYNEIPDINLDVPHS 103
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA C++EL P +H E+V EAI LE + ++ L
Sbjct: 165 LVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDL 224
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T G + + DI +D+P +
Sbjct: 225 LKSLWKSSTITVDQXKRGYERIYNEIPDINLDVPHS 260
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 3
Length = 150
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQL 704
L K+ LL+EY + EA ++EL P +H E+V EAI + LE + ++ L
Sbjct: 8 LVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 67
Query: 705 LEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKA 740
L+ L + +T + G + + DI +D+P +
Sbjct: 68 LKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 103
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1
pdb|3RK6|B Chain B, Crystal Structure Of The Middle Domain Of Human Paip1
Length = 234
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 265 AFQGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEA 324
A Q ++ELI+ +A P F M A LC+ L+ L P + G F+++LL C+
Sbjct: 57 ALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISP--QSG----NFRQLLLQRCRTE 110
Query: 325 FEGAD 329
+E D
Sbjct: 111 YEVKD 115
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 645 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQ 703
+L K T +++ EY + +EA+ V E+RAP + PE++ + I L+L++ E
Sbjct: 10 ELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASS 69
Query: 704 LLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAK 755
L+ L + + T+ + L + +D+P + + + ++++
Sbjct: 70 LISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISE 121
>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of
Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae
Length = 187
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 399 NVEAICQFFNTIG---KQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 455
+VE + Q F+ +G K++ E K+++V+D + +KE ++ Q R ++H++
Sbjct: 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFV 62
Query: 456 ANNWVPRRE 464
+P+ E
Sbjct: 63 KGTDLPKSE 71
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 192 LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKVTITHLECHNLLQVIIFL 251
L KDR + G L+ D L+ + + GI+ DI V TH+ ++ ++F
Sbjct: 40 LEHKDRRIIIDPGNLSSX-----DELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE 94
Query: 252 YSIFF---LLKLRSLFAFQGVIELIFDKAV 278
+ F+ + K ++ +F ++ I+ K +
Sbjct: 95 NATFYVHEVYKTKNYLSFGTIVGRIYSKVI 124
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 163
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 648 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEF 707
K +++EYF +E + + +L V A++LALE E +LL
Sbjct: 11 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSD 70
Query: 708 LLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 752
L V++T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 71 LCG-TVMSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 114
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
pdb|2RG8|B Chain B, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
Length = 165
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 646 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLL 705
K +++EYF +E + + +L V A++LALE E +LL
Sbjct: 9 FEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLL 68
Query: 706 EFLLNKNVLTTRDIGTGCLLYGSLLDDI---GIDLPKAPNNFGEMVGKLV 752
L V +T D+ + LL D+ +D P+AP G+ + + V
Sbjct: 69 SDLCG-TVXSTTDVEKS---FDKLLKDLPELALDTPRAPQLVGQFIARAV 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,091,663
Number of Sequences: 62578
Number of extensions: 851098
Number of successful extensions: 2214
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 26
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)