Query 003544
Match_columns 811
No_of_seqs 315 out of 838
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 17:26:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003544.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1595-1599//hhsearch_pdb/003544hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 214.7 14.6 116 118-233 5-122 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 128.1 11.7 97 124-230 46-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 97.8 10.8 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 41.2 6.5 92 124-216 18-123 (404)
5 2ktr_A Sequestosome-1; autopha 1.0 1 1 30.7 4.8 62 688-756 17-95 (117)
6 1vd2_A Protein kinase C, IOTA 1.0 1 1 30.5 6.9 56 689-752 4-60 (89)
7 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 28.5 5.1 62 689-756 3-80 (102)
8 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 27.3 5.5 60 700-785 17-80 (107)
9 1wmh_B Partitioning defective- 1.0 1 1 26.2 6.6 69 691-766 6-76 (86)
10 1q1o_A Cell division control p 1.0 1 1 23.6 7.2 74 690-765 4-85 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=214.67 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=107.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999840289843747899899224514247430999988999997089997469983898899808997026424620
Q 003544 118 IPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 197 (811)
Q Consensus 118 ~~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~~yrg~prrhlLTtGWs 197 (811)
...+....+|+|+||+|||++++||+||+++|+.|||+++..+.+++++|.++|.+|++|+|||+||+++++|+|++||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCCC
Q ss_conf 02112588779889999825--8838999993589998
Q 003544 198 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPPT 233 (811)
Q Consensus 198 ~FV~~K~LvaGDsVvF~R~~--~G~L~vGIRRa~r~~~ 233 (811)
.||++|+|++||.|+|++.+ .++|+|++||+.++..
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~ 122 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 87787199889899999953899689999998999986
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=128.15 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=84.8
Q ss_pred CEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 40289843747899899224514247430999988999997089997469983898899808997026424620021125
Q 003544 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (811)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~K 203 (811)
..+|.|+||+||+....++.||+++|+.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHHC
T ss_conf 9989999785661898679909999997488888-------37999979-9478989999589--078777638988875
Q ss_pred CCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 8877988999982588--38999993589
Q 003544 204 RLVAGDSVLFIWNEKN--QLLLGIRRAIR 230 (811)
Q Consensus 204 ~LvaGDsVvF~R~~~G--~L~vGIRRa~r 230 (811)
+|++||.++|...++. .+.|.|-|+..
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 99989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=97.79 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=80.5
Q ss_pred CEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 40289843747899899224514247430999988999997089997469983898899808997026424620021125
Q 003544 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (811)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~K 203 (811)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.++. +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 9878999877775--531888999998648669-------9889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 8877988999982588389999935
Q 003544 204 RLVAGDSVLFIWNEKNQLLLGIRRA 228 (811)
Q Consensus 204 ~LvaGDsVvF~R~~~G~L~vGIRRa 228 (811)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=41.21 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=66.6
Q ss_pred CEEEEEECCCCCCCCCC----CEEECHHHHHHHCCCCC-CCCCCCCCEEEE--EECCCCEEEEEEEEEC------CCCCE
Q ss_conf 40289843747899899----22451424743099998-899999708999--7469983898899808------99702
Q 003544 124 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 190 (811)
Q Consensus 124 ~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~fP~Ld-~~~~~p~q~L~~--~Dl~G~~W~Fr~~yrg------~prrh 190 (811)
.+.|+|.|++.|++..| +|.+|+......||.|+ .....|.+.+.+ .|...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred CHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf 04135772244578877764445785689998635489865567763157784168884277899983264668988745
Q ss_pred EECCCCHH-HHCCCCCCCCCEEEEEEC
Q ss_conf 64246200-211258877988999982
Q 003544 191 LLTTGWSV-FVSAKRLVAGDSVLFIWN 216 (811)
Q Consensus 191 lLTtGWs~-FV~~K~LvaGDsVvF~R~ 216 (811)
.||. |.. +.=.....+||.++|.+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 8840-2789865466888788999872
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=30.67 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCCCEEEEEEECC-----CCCEEECCC-----------CCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEECCCCCE
Q ss_conf 9851068995306-----410122058-----------98895899999987645-766558999997279888078966
Q 003544 688 TPTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDV 750 (811)
Q Consensus 688 ~~~~~~vKV~m~G-----~igRkiDL~-----------~~~sY~eL~~~L~~MF~-~~g~L~d~~~s~~~lvY~D~EgD~ 750 (811)
.....-||++..| .--|..-|. .-.+|.+|+..+.++|. +. ..+|++.|.|.|||+
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDl 89 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDL 89 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-------CCCEEEEEECCCCCE
T ss_conf 4452899999806777887279988426777431124567779999999999734558-------983899999899998
Q ss_pred EECCCC
Q ss_conf 862785
Q 003544 751 LLLGDD 756 (811)
Q Consensus 751 mLvGD~ 756 (811)
.-...+
T Consensus 90 ItISsD 95 (117)
T 2ktr_A 90 VAFSSD 95 (117)
T ss_dssp EEECSH
T ss_pred EEECCH
T ss_conf 976388
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=30.47 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCEEEEEEECC-CCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEE
Q ss_conf 851068995306-4101220589889589999998764576655899999727988807896686
Q 003544 689 PTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLL 752 (811)
Q Consensus 689 ~~~~~vKV~m~G-~igRkiDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EgD~mL 752 (811)
+...-||++-.| .+--.++. --+|++|..++.++|.+. ....+++.|.|.|||+.-
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~it 60 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCT 60 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEE
T ss_pred CCEEEEEEEECCEEEEEECCC--CCCHHHHHHHHHHHHCCC------CCCEEEEEEECCCCCCCC
T ss_conf 871899999478599998799--989999999999996889------898279999989979503
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=28.51 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=42.5
Q ss_pred CCCEEEEEEECC-----CCCEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEE
Q ss_conf 851068995306-----4101220589-----------889589999998764576655899999727988807896686
Q 003544 689 PTRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLL 752 (811)
Q Consensus 689 ~~~~~vKV~m~G-----~igRkiDL~~-----------~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EgD~mL 752 (811)
....-||+|..| .--|..-|.. -.+|++|+..+.++|.. |. ..+|++.|.|.|||+.-
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~---~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR---PGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC---SSCEEEEEECTTCCEEE
T ss_pred CCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CC---CCCEEEEEECCCCCEEE
T ss_conf 7469999998167777872699883367775422244666699999999997544---57---98389999989999897
Q ss_pred CCCC
Q ss_conf 2785
Q 003544 753 LGDD 756 (811)
Q Consensus 753 vGD~ 756 (811)
..++
T Consensus 77 iSsD 80 (102)
T 2kkc_A 77 FSSD 80 (102)
T ss_dssp ECSH
T ss_pred ECCH
T ss_conf 6488
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=27.26 Aligned_cols=60 Identities=28% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCCCEEE----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCHHHHHHCEEEEEEECHHH
Q ss_conf 6410122----058988958999999876457665589999972798880789668627854667750300879929565
Q 003544 700 GSVGRSL----DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPED 775 (811)
Q Consensus 700 G~igRki----DL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EgD~mLvGD~PWe~F~~~Vkri~I~~~~e 775 (811)
|...|.| ||+.--.|.+|..-..+-|.. .+-.|-|.|.|||+ |+|+..++
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~---------~DIaLNYrD~eGDL-----------------IrilddeD 70 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQR---------EDIALNYRDAEGDL-----------------VRLLSDED 70 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCC---------SSEEEEEECTTSCE-----------------EECCSHHH
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC---------CCEEEEEECCCCCE-----------------EEECCHHH
T ss_conf 73420388715646697789999999987341---------00466303688998-----------------99816577
Q ss_pred HHCCCCCCCC
Q ss_conf 5111322345
Q 003544 776 VQKMGEQGVE 785 (811)
Q Consensus 776 v~~m~~~~~~ 785 (811)
+.-|..++..
T Consensus 71 v~lmi~~sr~ 80 (107)
T 1oey_J 71 VALMVRQARG 80 (107)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHC
T ss_conf 8999999613
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=26.21 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=49.7
Q ss_pred CEEEEEEECCCCCE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCC-CCHHHHHHCEE
Q ss_conf 10689953064101-220589889589999998764576655899999727988807896686278-54667750300
Q 003544 691 RTFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFVSNVW 766 (811)
Q Consensus 691 ~~~vKV~m~G~igR-kiDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EgD~mLvGD-~PWe~F~~~Vk 766 (811)
-.-||.+-++-+-| ++|-..-.+|++|..-++++|.+. ...+++.|.|.+||++-.-+ +-..+-+.+++
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 799986338804676726887878899999999975789-------98789999889999761458899999997288
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=23.61 Aligned_cols=74 Identities=12% Similarity=0.289 Sum_probs=54.1
Q ss_pred CCEEEEEEECC-----CCC--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECC-CCCHHHH
Q ss_conf 51068995306-----410--122058988958999999876457665589999972798880789668627-8546677
Q 003544 690 TRTFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG-DDPWEAF 761 (811)
Q Consensus 690 ~~~~vKV~m~G-----~ig--RkiDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EgD~mLvG-D~PWe~F 761 (811)
...-|||+-.. +++ |.|=+..--+|++|...+.+-|.+. ...+ -....++-|.|.|||+...+ |+=|++-
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sddDl~~A 81 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSDEDWNVA 81 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCCC-CCCEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf 5189999935765666668679999669998999999999997678-6545-4650479999699998877288999999
Q ss_pred HHCE
Q ss_conf 5030
Q 003544 762 VSNV 765 (811)
Q Consensus 762 ~~~V 765 (811)
+.++
T Consensus 82 ~e~~ 85 (98)
T 1q1o_A 82 KEML 85 (98)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9997
Done!