BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003545
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 218/774 (28%), Positives = 359/774 (46%), Gaps = 62/774 (8%)
Query: 35 DSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEI 94
DS N V + + + F F+I +D G+ F + + + ++
Sbjct: 162 DSAYANEKTLNEIKNLVGRVIGREFKDKFIFEI--RDQLNGNDVFEV-----SDSGDGKV 214
Query: 95 TIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVP 154
IKG V + SG ++Y+K +C +VS+ G ++ P ++P V + V I P
Sbjct: 215 LIKGNNGVSLASGFNYYLKNYC--NVSYNPIMG---SNLKMPETMPSVGER-VVIDTPYE 268
Query: 155 WNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMED 214
Y N T SY+ +W+W+++E+ +DW A+ G+NL L GQE + ++ F + E+
Sbjct: 269 HRYALNFCTYSYTMSFWDWDQYEEFLDWCAMNGVNLVLDIIGQEEVLRRTLNEFGYSDEE 328
Query: 215 LNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGN 274
+ +F SGPA+ AW M N+ G+GGPL +W Q+ L +K+ RM G+ PVL ++G
Sbjct: 329 VKEFISGPAYFAWFYMQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGM 388
Query: 275 VPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDV 334
VP K+ A G W DR P TY+ + F ++ + F ++Q +GDV
Sbjct: 389 VPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDV 447
Query: 335 TDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQ 394
T+ Y D F+E + N + + M E D DAVW++Q W P
Sbjct: 448 TNFYGVDPFHEGGNTGDLDN--GKIYEIIQNKMIEHDNDAVWVIQNWQ--------GNPS 497
Query: 395 MKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIAS 454
L + +VLDLF+EV P W + P++W MLHNFGG + + + +A+
Sbjct: 498 NNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLAT 556
Query: 455 GPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKA 514
+ ++ + MVG+G+ E I NP+ YEL+ +MA+ +++ W + Y RRYGK
Sbjct: 557 -EIPKALANSEHMVGIGITPEAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKT 615
Query: 515 VPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPG 574
E+ W I+ T Y + G+A S ++A PG
Sbjct: 616 NKEILEAWNIILDTAYKKRN------------------DYYQGAAES------IINARPG 651
Query: 575 PRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLA 634
F + S + + Y E K +++F + + YD DI +Q L+ A
Sbjct: 652 ---FGIKSASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSA 708
Query: 635 NQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPS 694
+ Y A+ + + F S KFL+LIK + +L++ FL+G W+E A+ + +
Sbjct: 709 QEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSD 768
Query: 695 EMIQ--YEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSL 752
+ + +E+NAR VT W N L DY+N+ WSGL DYY R + + + L
Sbjct: 769 DWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAEL 828
Query: 753 REKSEF-QVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIA-IAKVLYDKY 804
++ +D W + W + K YP A +++ +AK+ + Y
Sbjct: 829 DGGAKAPNID-----WFKMEYDWVNKKSDTDKLYPTEASNENLGELAKIAMESY 877
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 321 bits (823), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 216/774 (27%), Positives = 359/774 (46%), Gaps = 62/774 (8%)
Query: 35 DSKRVNSSVQESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEI 94
DS N V + + + F F+I +D G+ F + + + ++
Sbjct: 185 DSAYANEKTLNEIKNLVGRVIGREFKDKFIFEI--RDQLNGNDVFEV-----SDSGDGKV 237
Query: 95 TIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVP 154
IKG V + SG ++Y+K +C +VS+ G ++ P ++P V + V I P
Sbjct: 238 LIKGNNGVSLASGFNYYLKNYC--NVSYNPIMG---SNLKMPETMPSVGER-VVIDTPYE 291
Query: 155 WNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMED 214
Y N T SY+ +W+W+++E+ +DW A+ G+NL L GQE + ++ F + E+
Sbjct: 292 HRYALNFCTYSYTMSFWDWDQYEEFLDWCAMNGVNLVLDIIGQEEVLRRTLNEFGYSDEE 351
Query: 215 LNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGN 274
+ +F SGPA+ AW M N+ G+GGPL +W Q+ L +K+ RM G+ PVL ++G
Sbjct: 352 VKEFISGPAYFAWFYMQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGM 411
Query: 275 VPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDV 334
VP K+ A G W DR P TY+ + F ++ + F ++Q +GDV
Sbjct: 412 VPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDV 470
Query: 335 TDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQ 394
T+ Y D F++ + N + + M E D DAVW++Q W P
Sbjct: 471 TNFYGVDPFHQGGNTGDLDN--GKIYEIIQNKMIEHDNDAVWVIQNWQ--------GNPS 520
Query: 395 MKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIAS 454
L + +VLDLF+EV P W + P++W MLHNFGG + + + +A+
Sbjct: 521 NNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLAT 579
Query: 455 GPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKA 514
+ ++ + MVG+G+ + I NP+ YEL+ +MA+ +++ W + Y RRYGK
Sbjct: 580 -EIPKALANSEHMVGIGITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKT 638
Query: 515 VPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPG 574
E+ W I+ T Y + G+A S ++A PG
Sbjct: 639 NKEILEAWNIILDTAYKKRN------------------DYYQGAAES------IINARPG 674
Query: 575 PRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLA 634
F + S + + Y E K +++F + + YD DI +Q L+ A
Sbjct: 675 ---FGIKSASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSA 731
Query: 635 NQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPS 694
+ Y A+ + + F S KFL+LIK + +L++ FL+G W+E A+ + +
Sbjct: 732 QEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSD 791
Query: 695 EMIQ--YEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSL 752
+ + +E+NAR VT W N L DY+N+ WSGL DYY R + + + L
Sbjct: 792 DWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAEL 851
Query: 753 REKSEF-QVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIA-IAKVLYDKY 804
++ +D W + W + K YP A +++ +AK+ + Y
Sbjct: 852 DGGAKAPNID-----WFKMEYDWVNKKSDTDKLYPTEASNENLGELAKIAMESY 900
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 616 ATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNI---------HSQKFLQLIK- 665
YR ++ D+ R SK N + + A +H D + FN H+ L+LIK
Sbjct: 38 GVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKP 97
Query: 666 ---DIDELLASNDNFLLGTWLESAK 687
D+D+ L+ +DN + ++ K
Sbjct: 98 FCEDLDQWLSEDDNHVAAIHCKAGK 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,890,802
Number of Sequences: 62578
Number of extensions: 1140056
Number of successful extensions: 2330
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 11
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)