Query 003545
Match_columns 811
No_of_seqs 123 out of 280
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2233 Alpha-N-acetylglucosam 100.0 3E-219 6E-224 1757.1 54.6 660 90-805 3-665 (666)
2 PF05089 NAGLU: Alpha-N-acetyl 100.0 4E-151 1E-155 1209.1 21.5 332 156-495 1-332 (333)
3 PF12972 NAGLU_C: Alpha-N-acet 100.0 5E-77 1.1E-81 630.3 22.9 267 501-804 1-267 (267)
4 PF12971 NAGLU_N: Alpha-N-acet 99.9 7.1E-25 1.5E-29 196.1 8.1 86 44-142 1-86 (86)
5 PF00150 Cellulase: Cellulase 95.5 0.097 2.1E-06 54.9 10.8 172 169-414 16-200 (281)
6 PF02449 Glyco_hydro_42: Beta- 95.5 0.036 7.7E-07 62.2 7.9 137 166-348 2-140 (374)
7 TIGR03356 BGL beta-galactosida 68.2 51 0.0011 38.3 12.0 138 173-374 53-210 (427)
8 PF01229 Glyco_hydro_39: Glyco 63.9 7.1 0.00015 45.8 4.0 103 254-375 88-198 (486)
9 cd06565 GH20_GcnA-like Glycosy 59.9 1.9E+02 0.0041 31.9 14.0 239 176-474 19-275 (301)
10 PF13812 PPR_3: Pentatricopept 57.2 6.5 0.00014 27.9 1.4 19 248-266 16-34 (34)
11 PF12891 Glyco_hydro_44: Glyco 55.8 7 0.00015 42.1 2.0 124 253-385 27-187 (239)
12 cd06593 GH31_xylosidase_YicI Y 55.6 1.3E+02 0.0028 33.0 11.8 159 161-373 15-198 (308)
13 cd06562 GH20_HexA_HexB-like Be 48.9 75 0.0016 35.8 8.8 133 173-345 17-162 (348)
14 PF02065 Melibiase: Melibiase; 43.0 65 0.0014 37.2 7.2 123 253-382 107-236 (394)
15 COG0276 HemH Protoheme ferro-l 41.9 4.7E+02 0.01 29.7 13.4 158 238-412 69-265 (320)
16 PRK00035 hemH ferrochelatase; 39.4 3.8E+02 0.0083 29.8 12.4 155 237-411 69-269 (333)
17 COG1422 Predicted membrane pro 39.2 93 0.002 32.9 7.0 64 620-683 66-130 (201)
18 cd06388 PBP1_iGluR_AMPA_GluR4 34.9 1E+02 0.0022 34.8 7.2 229 75-369 46-287 (371)
19 PF05119 Terminase_4: Phage te 34.6 1E+02 0.0023 27.7 5.9 80 175-267 4-85 (100)
20 cd06394 PBP1_iGluR_Kainate_KA1 32.2 89 0.0019 35.0 6.1 67 250-331 197-268 (333)
21 cd04247 AAK_AK-Hom3 AAK_AK-Hom 31.4 18 0.00039 40.2 0.5 70 250-343 176-246 (306)
22 PF03705 CheR_N: CheR methyltr 30.8 39 0.00084 27.5 2.2 20 247-266 24-43 (57)
23 PRK09852 cryptic 6-phospho-bet 30.0 1.3E+02 0.0028 35.7 7.1 76 173-283 70-145 (474)
24 PRK15014 6-phospho-beta-glucos 29.4 1.1E+02 0.0023 36.4 6.3 112 173-346 68-179 (477)
25 PF02838 Glyco_hydro_20b: Glyc 28.1 1.5E+02 0.0033 27.6 6.1 64 45-114 37-107 (124)
26 cd03198 GST_C_CLIC GST_C famil 27.2 1.5E+02 0.0032 29.2 5.9 42 632-673 6-47 (134)
27 TIGR00825 EIIBC-GUT PTS system 26.9 31 0.00067 38.2 1.2 42 234-276 10-58 (331)
28 PF03648 Glyco_hydro_67N: Glyc 25.9 99 0.0021 29.5 4.4 35 75-111 88-122 (122)
29 cd06592 GH31_glucosidase_KIAA1 25.4 3.9E+02 0.0085 29.4 9.5 82 253-346 73-166 (303)
30 PF08671 SinI: Anti-repressor 25.3 37 0.00081 25.4 1.0 15 206-220 13-27 (30)
31 cd04244 AAK_AK-LysC-like AAK_A 25.2 36 0.00078 37.7 1.4 72 247-343 169-240 (298)
32 PF07328 VirD1: T-DNA border e 24.6 2.5E+02 0.0055 28.0 6.7 53 619-673 73-128 (147)
33 cd06389 PBP1_iGluR_AMPA_GluR2 22.4 2.5E+02 0.0055 31.5 7.4 60 249-323 186-250 (370)
34 PF13410 GST_C_2: Glutathione 21.9 1.2E+02 0.0026 25.0 3.7 28 652-680 3-30 (69)
35 PF09278 MerR-DNA-bind: MerR, 21.2 67 0.0014 26.8 2.0 18 202-219 7-24 (65)
36 PRK09589 celA 6-phospho-beta-g 20.2 2.6E+02 0.0057 33.1 7.2 74 173-283 66-141 (476)
37 cd08777 Death_RIP1 Death Domai 20.2 77 0.0017 28.9 2.3 22 199-220 14-35 (86)
38 cd06594 GH31_glucosidase_YihQ 20.2 7.3E+02 0.016 27.6 10.4 105 253-372 74-204 (317)
No 1
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-219 Score=1757.13 Aligned_cols=660 Identities=50% Similarity=0.957 Sum_probs=639.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHhccceeeeccCCCCccccCCCCCCCCCCCCCCeeeecCCcceeeccccccCcccc
Q 003545 90 NEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWEKTGGFQIVSVPKPGSLPHVTDGGVKIQRPVPWNYYQNVVTSSYSYV 169 (811)
Q Consensus 90 ~~gkI~I~Gns~vala~Gln~YLk~~c~~~iSW~~~~g~~l~~~~lP~~LP~v~~~~v~~~t~~~~RY~lN~CT~sYT~a 169 (811)
.+++|.|+|+|||++|+|||||||+.|++||+|+ +.++. +|.+||.|+.. +...+| +|||+|+||+|||++
T Consensus 3 ~~~~il~~g~tGv~~~~~lh~ylk~~~~~~v~w~---k~~~s---lp~~lprv~~e-~~~~~p--~~YyqNvcT~SYSfa 73 (666)
T KOG2233|consen 3 DGGRILIKGTTGVEIASGLHWYLKYKCNAHVSWD---KQVAS---LPQHLPRVDSE-IFIARP--WNYYQNVCTFSYSFA 73 (666)
T ss_pred CCceEEEecCchhhhhhcccHHHHHhhcCceeeh---heeee---CCCcCCCCCcc-eeeccc--hHhhcceeeeeeeee
Confidence 4679999999999999999999999999999999 88888 99999999987 666666 999999999999999
Q ss_pred ccChhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHH
Q 003545 170 WWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQL 249 (811)
Q Consensus 170 ~WdW~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~ 249 (811)
||+|+|||||||||||||||++||++|||+||++||+.||++.|||++||+|||||||+|||||++||||||++|+..|.
T Consensus 74 WW~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql 153 (666)
T KOG2233|consen 74 WWGWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQL 153 (666)
T ss_pred eechHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHH
Q 003545 250 VLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQIL 329 (811)
Q Consensus 250 ~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~ 329 (811)
.|||||++|||+|||+||||+|+||||++++++||++++++++.|+.|++. |||.++|.|+||||.+||.+|+++|+|
T Consensus 154 ~LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~--~~C~l~v~P~dplF~eIgs~Flr~~~k 231 (666)
T KOG2233|consen 154 LLQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSR--YSCMLLVSPFDPLFQEIGSTFLRHQIK 231 (666)
T ss_pred HHHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcc--eeeeEEccCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999975 999999999999999999999999999
Q ss_pred HhCCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCCCCEEE
Q 003545 330 EYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIV 409 (811)
Q Consensus 330 ~fG~~~h~Y~~D~FnE~~pp~~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~AlL~~Vp~~~mlv 409 (811)
+||.++|+|+||||||+.||+++|+|+++.+.|||+||+++||+||||||||+|.+|+ ||+++++||||++||.|||||
T Consensus 232 efG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~-FW~~~~ikafL~avP~GrllV 310 (666)
T KOG2233|consen 232 EFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDP-FWPPWQIKAFLSAVPRGRLLV 310 (666)
T ss_pred HhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCC-CCChHHHHHHHhcCCcCcEEE
Confidence 9997799999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEcCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChhHhhhcCCCceEEEeeCccccccChhHHHHHHh
Q 003545 410 LDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSE 489 (811)
Q Consensus 410 LDL~aE~~p~W~~~~~f~G~pwIWc~LhNFGG~~gm~G~l~~i~~~~~~A~~~~~s~mvGiG~tpEGie~NpvvYeL~~d 489 (811)
|||+||..|+|++|.+|+|||||||||||||||.+|+|.++.|++||.+|+..+||+|||+||+||||+||||||+||.|
T Consensus 311 LDLyaEv~P~~~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e 390 (666)
T KOG2233|consen 311 LDLYAEVVPAWQMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIE 390 (666)
T ss_pred EehhhhhhhHHHhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCC-CcccccccCCCCcccCcccchhhhhhh
Q 003545 490 MAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNT-DFIVKFPDWDPSLLSGSAISKRDQMHA 568 (811)
Q Consensus 490 ~aW~~~~idl~~Wl~~Ya~rRYG~~~~~~~~AW~iL~~TvY~~~~~~~~~~~-~~~~s~~~~rPsl~~~~~~~~~~~~~~ 568 (811)
++|+++++||+.|+++|++||||+.++.+++||.+|.+|||||+++...++. ..+. -||++.
T Consensus 391 ~~wsde~ldl~~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~----rRp~f~------------- 453 (666)
T KOG2233|consen 391 RGWSDEPLDLNNWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLY----RRPSFQ------------- 453 (666)
T ss_pred hccCCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeE----eccccc-------------
Confidence 9999999999999999999999999999999999999999999997777763 3333 377741
Q ss_pred cccCCCCcccccccCCCCCCCcccCCHHHHHHHHHHHHHhhhccCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003545 569 LHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGC-ATYRYDLVDITRQALSKLANQVYMDAVIAFQH 647 (811)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~a~~~l~~s-~~yryDLVDvtRQ~L~n~a~~~~~~~~~Ay~~ 647 (811)
..+.+||+.+++.+||++||.+.+.+..+ ++|||||||+|||+|+..++++|.++..||..
T Consensus 454 ------------------~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflk 515 (666)
T KOG2233|consen 454 ------------------RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLK 515 (666)
T ss_pred ------------------CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25679999999999999999999887666 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhceeccCCCCCCCCCCcccccch
Q 003545 648 KDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANK 727 (811)
Q Consensus 648 kd~~~f~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~g~L~DYAnK 727 (811)
||...+.+.|.++++|++|||.+|+++.+||||+||++||+.|.+.+|++.||.|||+|||+|||+ |+|+|||||
T Consensus 516 kd~~sl~~~~~~llelf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~k 590 (666)
T KOG2233|consen 516 KDKQSLGALSEKLLELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANK 590 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hcchhhhhccHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH-HHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHhh
Q 003545 728 FWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWV-FISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYF 805 (811)
Q Consensus 728 ~WaGL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~~~~~~~-~~E~~W~~~w~~~~~~y~~~p~gd~~~~a~~l~~ky~ 805 (811)
|||||++|||.|||+.|++.+.++++.|+||+.++|..+++ .+|.+++ .++..||.+|.||+++|++.|+.||+
T Consensus 591 qwaGLvsdYY~pRwrlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs----~s~~vYPv~p~Gdt~~is~~if~ky~ 665 (666)
T KOG2233|consen 591 QWAGLVSDYYGPRWRLFLEWILESLHDGKPFNHTEFSISVFRDVERPFS----ISNIVYPVKPKGDTLAISRHIFSKYF 665 (666)
T ss_pred HHHHhhhhcccHHHHHHHHHHHHHHhcCCCccccchhhHHHHhhhcccc----ccccccccCCCccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999996 9999999 99999999999999999999999996
No 2
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=100.00 E-value=4.5e-151 Score=1209.07 Aligned_cols=332 Identities=61% Similarity=1.186 Sum_probs=249.8
Q ss_pred eeeccccccCccccccChhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccC
Q 003545 156 NYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHG 235 (811)
Q Consensus 156 RY~lN~CT~sYT~a~WdW~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~g 235 (811)
|||+||||||||||||||+|||||||||||||||||||+||||+||+|||++||||++||++||+||||+||+|||||+|
T Consensus 1 RY~~N~cT~sYt~a~WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~g 80 (333)
T PF05089_consen 1 RYYLNYCTFSYTMAWWDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQG 80 (333)
T ss_dssp EEE--TTHHHHTTTT--HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--S
T ss_pred CccccccCCcccccccCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCch
Q 003545 236 WGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPL 315 (811)
Q Consensus 236 wGGPLp~~w~~~q~~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~Dpl 315 (811)
||||||++|+++|++||||||+|||||||+||||||+||||++|++++|+|+|++++.|++|. ||++|||+|||
T Consensus 81 wgGPLp~~w~~~q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~------~~~~L~P~dpl 154 (333)
T PF05089_consen 81 WGGPLPQSWIDQQAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFC------RPYFLDPTDPL 154 (333)
T ss_dssp TT----TTHHHHHHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--------EEE-SS--H
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCC------CCceeCCCCch
Confidence 999999999999999999999999999999999999999999999999999999999999964 68999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhH
Q 003545 316 FVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQM 395 (811)
Q Consensus 316 F~~I~~~F~~eq~~~fG~~~h~Y~~D~FnE~~pp~~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~ 395 (811)
|++||++||++|+|+||+ +|||++|||||++||+++++||+++|++||++|+++||+||||||||+|++++ ||+++++
T Consensus 155 F~~i~~~F~~~q~~~yG~-~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~-fW~~~~~ 232 (333)
T PF05089_consen 155 FAEIAKLFYEEQIKLYGT-DHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDP-FWTPNPI 232 (333)
T ss_dssp HHHHHHHHHHHHHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE---------BTTBS-
T ss_pred HHHHHHHHHHHHHHhcCC-CceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEccccccccc-ccCcchH
Confidence 999999999999999997 99999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHhhcCCCCCCEEEEEcCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChhHhhhcCCCceEEEeeCcc
Q 003545 396 KALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCME 475 (811)
Q Consensus 396 ~AlL~~Vp~~~mlvLDL~aE~~p~W~~~~~f~G~pwIWc~LhNFGG~~gm~G~l~~i~~~~~~A~~~~~s~mvGiG~tpE 475 (811)
+|||++||+||||||||+||..|+|+++++|+|||||||||||||||+||+|+++.|+++|.+|+++++++|||||+|||
T Consensus 233 ~a~L~~Vp~~~mliLDL~se~~p~w~~~~~f~G~pwIwc~L~NFGG~~gl~G~~~~i~~~~~~a~~~~~~~m~G~G~tpE 312 (333)
T PF05089_consen 233 KALLSGVPKGRMLILDLFSERFPQWKRTESFYGKPWIWCMLHNFGGNTGLYGNLENIASGPIEARASPNSNMVGIGLTPE 312 (333)
T ss_dssp HHHHTT-SGGGEEEEETTTTTS---HHHHCTT---EEEEE---STT--SS---HHHHHHHHHHHHHT--S-EEEEEE--S
T ss_pred HHHHcCCCCCCeEEEEccccccchhccccccccchhhhhcccCCCCCCCCcccHHHHHhhHHHHHHhcCCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccccChhHHHHHHhhccCCC
Q 003545 476 GIEQNPVVYELMSEMAFRNE 495 (811)
Q Consensus 476 Gie~NpvvYeL~~d~aW~~~ 495 (811)
||||||||||||+||+|+++
T Consensus 313 gi~~NpvvYeL~~e~aW~~~ 332 (333)
T PF05089_consen 313 GIEQNPVVYELMLEMAWRKD 332 (333)
T ss_dssp -S-S-HHHHHHHHHGGG-SS
T ss_pred ccccCHHHHHHHHHhcccCC
Confidence 99999999999999999975
No 3
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=100.00 E-value=5e-77 Score=630.33 Aligned_cols=267 Identities=44% Similarity=0.791 Sum_probs=203.9
Q ss_pred HHHHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCCCcccccccCCCCcccCcccchhhhhhhcccCCCCccccc
Q 003545 501 EWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLS 580 (811)
Q Consensus 501 ~Wl~~Ya~rRYG~~~~~~~~AW~iL~~TvY~~~~~~~~~~~~~~~s~~~~rPsl~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (811)
+||++|++||||+.++++.+||++|++||||+++....++ .+++++||+++..
T Consensus 1 ~Wi~~Y~~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~----~si~~~rPsl~~~----------------------- 53 (267)
T PF12972_consen 1 EWIKDYATRRYGKYDPEAREAWQILLRTVYNNTGGQYGRG----ESIFCARPSLNGN----------------------- 53 (267)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHTTTS---S---SS------GGGS-S-SS-------------------------
T ss_pred ChHHHHHHccCCCCCHHHHHHHHHHHhhhCCCCCCCCCCC----cCceeeCCCCCcc-----------------------
Confidence 6999999999999999999999999999999987554443 6777899998654
Q ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003545 581 EENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKF 660 (811)
Q Consensus 581 ~~~~~~~~~~~~Yd~~~l~~A~~lll~a~~~l~~s~~yryDLVDvtRQ~L~n~a~~~~~~~~~Ay~~kd~~~f~~~~~~~ 660 (811)
..++|.++.++|||.+|++||++||+++++|+++++|||||||||||||+|+++.+|.+|++||+++|.+.|++.+++|
T Consensus 54 -~~~~~~~~~~~Yd~~~l~~A~~~ll~a~~~l~~~~~yryDlvDvtRQvL~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~ 132 (267)
T PF12972_consen 54 -SASTWGPPGIWYDPADLEKAWRLLLKAADELKDSETYRYDLVDVTRQVLSNYADELYQQLVDAYNSKDIEAFKALSARF 132 (267)
T ss_dssp --SSTT------S-HHHHHHHHHHHHHCHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -cccCCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhceeccCCCCCCCCCCcccccchhcchhhhhccHHH
Q 003545 661 LQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPR 740 (811)
Q Consensus 661 l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~g~L~DYAnK~WaGL~~dyY~pR 740 (811)
|+||+|||+||+||++|+||+||++||++|.|++||++||+|||+|||+|||. |+|+|||||+|+|||+|||+||
T Consensus 133 l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qIT~Wg~~-----g~l~DYA~k~W~GL~~dyY~pR 207 (267)
T PF12972_consen 133 LELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQITLWGPS-----GELHDYANKQWSGLVSDYYLPR 207 (267)
T ss_dssp HHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHTTTSHTT-----TS-TTTT----BTHHHHTHHHH
T ss_pred HHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccCCC-----CCcccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 7999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHh
Q 003545 741 ASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKY 804 (811)
Q Consensus 741 W~~f~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~w~~~~~~y~~~p~gd~~~~a~~l~~ky 804 (811)
|++||+++.++|++|++||+++|+++++++|++|+ ++++.||++|.||++++|++|++||
T Consensus 208 W~~f~~~l~~~l~~~~~~d~~~~~~~~~~~E~~W~----~~~~~y~~~~~gd~~~~a~~l~~ky 267 (267)
T PF12972_consen 208 WQMFFDYLRAALENGRPFDQTAFRRKLFAWEEKWV----NSTKVYPTEPTGDPVEVARRLYQKY 267 (267)
T ss_dssp HHHHHHHHHHHHTT-S------H----HHHHHHHH----TTS----SS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHH----cCCCCCCCCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999 9999999999999999999999998
No 4
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=99.91 E-value=7.1e-25 Score=196.11 Aligned_cols=86 Identities=41% Similarity=0.880 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhcCCCcCceEEEEeecCCCCCCceEEEeccccccCCCCeEEEEeCCHHHHHHHHHHHHHHhccceeeec
Q 003545 44 QESAAKAVLQRLLPTHVNSFQFKIVSKDVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVSWE 123 (811)
Q Consensus 44 ~~~~~~~li~R~lp~~a~~F~~~~~~~~~~~g~d~F~i~~~~~~~~~~gkI~I~Gns~vala~Gln~YLk~~c~~~iSW~ 123 (811)
|++++++||+|+||+++.+|+|++.++.+ +.|+|+|++ +++|||+|+|||+||||+||||||||||++||||+
T Consensus 1 q~~a~~~li~Rll~~~~~~f~~~~~~~~~--~~d~F~l~~-----~~~gki~I~G~s~vala~Gl~~YLk~~c~~~isW~ 73 (86)
T PF12971_consen 1 QISAARGLIERLLPEHASQFTFELIPSSN--GKDVFELSS-----ADNGKIVIRGNSGVALASGLNWYLKYYCHVHISWN 73 (86)
T ss_dssp --HHHHHHHHHHC-GGGGGEEEEE---BT--TBEEEEEEE------SSS-EEEEESSHHHHHHHHHHHHHHHS--B--TT
T ss_pred CcHHHHHHHHhhcccccceEEEEEecCCC--CCCEEEEEe-----CCCCeEEEEeCCHHHHHHHHHHHHHHHhCceEeec
Confidence 67899999999999999999999998643 899999974 36899999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCC
Q 003545 124 KTGGFQIVSVPKPGSLPHV 142 (811)
Q Consensus 124 ~~~g~~l~~~~lP~~LP~v 142 (811)
|+|++ +|++||.|
T Consensus 74 ---g~~~~---lP~~LP~v 86 (86)
T PF12971_consen 74 ---GDQLE---LPASLPAV 86 (86)
T ss_dssp -----B-------SS----
T ss_pred ---CCccc---CCCCCCCC
Confidence 99999 99999986
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.54 E-value=0.097 Score=54.88 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=106.4
Q ss_pred cccChhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCH-HHHHH
Q 003545 169 VWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ-NWLNQ 247 (811)
Q Consensus 169 a~WdW~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~-~w~~~ 247 (811)
.|.....-+..||.|+-.|+|..=..++ | ..++ .|-|. ..-+.
T Consensus 16 ~w~~~~~~~~~~~~~~~~G~n~VRi~v~----~--------------~~~~------------------~~~~~~~~~~~ 59 (281)
T PF00150_consen 16 HWYNPSITEADFDQLKALGFNTVRIPVG----W--------------EAYQ------------------EPNPGYNYDET 59 (281)
T ss_dssp TTSGGGSHHHHHHHHHHTTESEEEEEEE----S--------------TSTS------------------TTSTTTSBTHH
T ss_pred ccCCCCCHHHHHHHHHHCCCCEEEeCCC----H--------------HHhc------------------CCCCCccccHH
Confidence 3544558899999999999999887776 1 1111 11111 12234
Q ss_pred HHHHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHH
Q 003545 248 QLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQ 327 (811)
Q Consensus 248 q~~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq 327 (811)
..+-=+++|+..++.||..||--... ..|..-.. ..+..+-..+--+.|.+..
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~~------------------~~w~~~~~---------~~~~~~~~~~~~~~~~~~l 112 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHNA------------------PGWANGGD---------GYGNNDTAQAWFKSFWRAL 112 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEES------------------TTCSSSTS---------TTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccC------------------cccccccc---------ccccchhhHHHHHhhhhhh
Confidence 44555899999999999998632222 44522111 1122222333334477788
Q ss_pred HHHh-CCCCcccccCCCCCCCCCCCC-------chHHHHHHHHHHHHHHccCCCceEEEec--ccCCCCCCCCCchhHHH
Q 003545 328 ILEY-GDVTDIYNCDTFNENTPPTND-------TNYISSLGAAVYKAMSEGDKDAVWLMQG--WLFYSDSAFWKPPQMKA 397 (811)
Q Consensus 328 ~~~f-G~~~h~Y~~D~FnE~~pp~~d-------~~~L~~~~~~iy~am~~~dP~AvWvmQg--W~F~~~~~fW~~~~~~A 397 (811)
.+.| +. ..+.+.|++||......+ +..+....++++++|+++||+..=++.| |. .....+
T Consensus 113 a~~y~~~-~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~---------~~~~~~ 182 (281)
T PF00150_consen 113 AKRYKDN-PPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWG---------ADPDGA 182 (281)
T ss_dssp HHHHTTT-TTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHH---------TBHHHH
T ss_pred ccccCCC-CcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccc---------cccchh
Confidence 8889 55 678899999998875332 3567889999999999999995445555 52 222122
Q ss_pred hhcCCC--CCCEEEEEcCC
Q 003545 398 LLHSVP--LGKMIVLDLFA 414 (811)
Q Consensus 398 lL~~Vp--~~~mlvLDL~a 414 (811)
... .| .+..+|++...
T Consensus 183 ~~~-~P~~~~~~~~~~~H~ 200 (281)
T PF00150_consen 183 AAD-NPNDADNNDVYSFHF 200 (281)
T ss_dssp HHH-STTTTTTSEEEEEEE
T ss_pred hhc-CcccccCceeEEeeE
Confidence 222 66 35777777653
No 6
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.50 E-value=0.036 Score=62.17 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=95.0
Q ss_pred ccccccChhhhhhhHhHHhhcCCCccc-cccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHH
Q 003545 166 YSYVWWEWERWEKEIDWMALQGINLPL-AFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNW 244 (811)
Q Consensus 166 YT~a~WdW~rWEreIDWMALnGvNlpL-A~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w 244 (811)
|.---|+=++||+-|+=|...|||+.- +.. +|.+|---+| -.--+|
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~------------------------------~W~~lEP~eG---~ydF~~ 48 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEF------------------------------SWSWLEPEEG---QYDFSW 48 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CC------------------------------EHHHH-SBTT---B---HH
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEe------------------------------chhhccCCCC---eeecHH
Confidence 444457789999999999999999986 322 4555543332 122233
Q ss_pred HHHHHHHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceec-CCCCCCcCCCCCcccccccCCCCchHHHHHHHH
Q 003545 245 LNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITR-LGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAF 323 (811)
Q Consensus 245 ~~~q~~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~-~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F 323 (811)
-.++++++++.||+.||--+.+..|.-+.+++|++..+. .|...++.. ....++.+|.|.+..+.|
T Consensus 49 -------lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~------~~~~~~~~p~yr~~~~~~ 115 (374)
T PF02449_consen 49 -------LDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGS------RQHYCPNSPAYREYARRF 115 (374)
T ss_dssp -------HHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCC------STT-HCCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCC------ccccchhHHHHHHHHHHH
Confidence 457788999999999998888889999999999987644 333333221 123568999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCCCCCC
Q 003545 324 IKQQILEYGDVTDIYNCDTFNENTP 348 (811)
Q Consensus 324 ~~eq~~~fG~~~h~Y~~D~FnE~~p 348 (811)
+++..+.|++--.+.+.+..||.+-
T Consensus 116 ~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 116 IRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred HHHHHhhccccceEEEEEeccccCc
Confidence 9999999998557889999999765
No 7
>TIGR03356 BGL beta-galactosidase.
Probab=68.24 E-value=51 Score=38.27 Aligned_cols=138 Identities=22% Similarity=0.359 Sum_probs=83.8
Q ss_pred hhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHHH
Q 003545 173 WERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQ 252 (811)
Q Consensus 173 W~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~LQ 252 (811)
|.||++.|+.|+--|+|.-=.-+ -|.|++.+ | - |. +=++..+-=
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~-g--------------------------~-~~----~n~~~~~~y 96 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI----AWPRIFPE-G--------------------------T-GP----VNPKGLDFY 96 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc----chhhcccC-C--------------------------C-CC----cCHHHHHHH
Confidence 68999999999999999644222 35565542 1 0 11 122233444
Q ss_pred HHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhC
Q 003545 253 KKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYG 332 (811)
Q Consensus 253 kkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~fG 332 (811)
+++++.+++.||+||+==+-=-+|..|.++ |.|.+ + .+. ..|.+.++... +.||
T Consensus 97 ~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~---------gGw~~--~-------~~~----~~f~~ya~~~~----~~~~ 150 (427)
T TIGR03356 97 DRLVDELLEAGIEPFVTLYHWDLPQALEDR---------GGWLN--R-------DTA----EWFAEYAAVVA----ERLG 150 (427)
T ss_pred HHHHHHHHHcCCeeEEeeccCCccHHHHhc---------CCCCC--h-------HHH----HHHHHHHHHHH----HHhC
Confidence 699999999999999777655677766531 33422 1 111 36666555554 6788
Q ss_pred CCCcccccCCCCCCC------------CCCCCc---h-----HHHHHHHHHHHHHHccCCCc
Q 003545 333 DVTDIYNCDTFNENT------------PPTNDT---N-----YISSLGAAVYKAMSEGDKDA 374 (811)
Q Consensus 333 ~~~h~Y~~D~FnE~~------------pp~~d~---~-----~L~~~~~~iy~am~~~dP~A 374 (811)
+--.++ =+|||.. ||.... . .+-.+..++++.+++.+|++
T Consensus 151 d~v~~w--~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~ 210 (427)
T TIGR03356 151 DRVKHW--ITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGA 210 (427)
T ss_pred CcCCEE--EEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 734555 4899863 332111 1 23345556678888888864
No 8
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=63.93 E-value=7.1 Score=45.78 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCC-chHHHHHHHHHHHHHHHhC
Q 003545 254 KIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTD-PLFVEIGEAFIKQQILEYG 332 (811)
Q Consensus 254 kIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~D-plF~~I~~~F~~eq~~~fG 332 (811)
+|++-+.+.||+|.+- -|+-|.++..... ..-.|.+ .+-.|.| ..+.++-+.|.++.++.||
T Consensus 88 ~i~D~l~~~g~~P~ve--l~f~p~~~~~~~~-----~~~~~~~----------~~~pp~~~~~W~~lv~~~~~h~~~RYG 150 (486)
T PF01229_consen 88 QILDFLLENGLKPFVE--LGFMPMALASGYQ-----TVFWYKG----------NISPPKDYEKWRDLVRAFARHYIDRYG 150 (486)
T ss_dssp HHHHHHHHCT-EEEEE--E-SB-GGGBSS-------EETTTTE----------E-S-BS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEE--EEechhhhcCCCC-----ccccccC----------CcCCcccHHHHHHHHHHHHHHHHhhcC
Confidence 6999999999999654 3677887754311 0112222 1234555 6789999999999999999
Q ss_pred CCCcc--cccCCCCCCCCCC----CC-chHHHHHHHHHHHHHHccCCCce
Q 003545 333 DVTDI--YNCDTFNENTPPT----ND-TNYISSLGAAVYKAMSEGDKDAV 375 (811)
Q Consensus 333 ~~~h~--Y~~D~FnE~~pp~----~d-~~~L~~~~~~iy~am~~~dP~Av 375 (811)
. +.+ ......||-.-.. +. .+|+ ++-++++++++++||++.
T Consensus 151 ~-~ev~~W~fEiWNEPd~~~f~~~~~~~ey~-~ly~~~~~~iK~~~p~~~ 198 (486)
T PF01229_consen 151 I-EEVSTWYFEIWNEPDLKDFWWDGTPEEYF-ELYDATARAIKAVDPELK 198 (486)
T ss_dssp H-HHHTTSEEEESS-TTSTTTSGGG-HHHHH-HHHHHHHHHHHHH-TTSE
T ss_pred C-ccccceeEEeCcCCCcccccCCCCHHHHH-HHHHHHHHHHHHhCCCCc
Confidence 5 332 1235578854431 11 2354 677899999999999986
No 9
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.94 E-value=1.9e+02 Score=31.94 Aligned_cols=239 Identities=16% Similarity=0.129 Sum_probs=126.0
Q ss_pred hhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHHHHHH
Q 003545 176 WEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKI 255 (811)
Q Consensus 176 WEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~LQkkI 255 (811)
=.+.||.||..|+|.-.--. .+ . |.++. =|. +-.-+|+++++=+ +.|
T Consensus 19 lk~~id~ma~~k~N~l~lhl-~D-----~---f~~~~--------~p~---------~~~~~~~yT~~ei-------~ei 65 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYY-ED-----T---FPYEG--------EPE---------VGRMRGAYTKEEI-------REI 65 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEE-ec-----c---eecCC--------Ccc---------cccCCCCcCHHHH-------HHH
Confidence 46889999999999776433 11 1 11110 011 1123688876544 468
Q ss_pred HHHHHHcCCeec--ccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCC
Q 003545 256 VSRMLELGMTPV--LPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGD 333 (811)
Q Consensus 256 l~RMReLGM~PV--LPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~fG~ 333 (811)
++--+++||+-| +.. .||.=..++ +|. ......+.. + +..|+|.+|.=-++-+.-++|..+.|..
T Consensus 66 ~~yA~~~gI~vIPeid~-pGH~~~~l~--~~~--~~~l~~~~~------~--~~~l~~~~~~t~~fi~~li~ev~~~f~s 132 (301)
T cd06565 66 DDYAAELGIEVIPLIQT-LGHLEFILK--HPE--FRHLREVDD------P--PQTLCPGEPKTYDFIEEMIRQVLELHPS 132 (301)
T ss_pred HHHHHHcCCEEEecCCC-HHHHHHHHh--Ccc--cccccccCC------C--CCccCCCChhHHHHHHHHHHHHHHhCCC
Confidence 888999998744 333 577655554 332 222222211 1 3469999999999999999999999976
Q ss_pred CCcc-cccCCCCCCCCCC--------CCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCC
Q 003545 334 VTDI-YNCDTFNENTPPT--------NDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPL 404 (811)
Q Consensus 334 ~~h~-Y~~D~FnE~~pp~--------~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~AlL~~Vp~ 404 (811)
..| -++|=+++.+... +..+-....-+.|.+-+++..+ -++.|- | -+...+.....+..+|+
T Consensus 133 -~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~----~~~~W~---D-~~~~~~~~~~~~~~l~~ 203 (301)
T cd06565 133 -KYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGP----KPMMWD---D-MLRKLSIEPEALSGLPK 203 (301)
T ss_pred -CeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCC----EEEEEh---H-HhcCCCCChHHHhCCCC
Confidence 443 6788777643211 1111223344556666777776 345672 0 01110001245567776
Q ss_pred CCEEEEEcCCCccc-cc----ccccCCCCCCceee-eccCCCCccccccchhhhhcChhHhhhcC-CCceEEEeeCc
Q 003545 405 GKMIVLDLFAEVKP-IW----RTSSQFYGAPYVWC-MLHNFGGNIEIYGILDSIASGPVDARVSE-NSTMVGVGMCM 474 (811)
Q Consensus 405 ~~mlvLDL~aE~~p-~W----~~~~~f~G~pwIWc-~LhNFGG~~gm~G~l~~i~~~~~~A~~~~-~s~mvGiG~tp 474 (811)
+ +|+-.+.-..+ .. .+.-.-+|.+++-| -.++|.|-+ ++.+.--.+...++... .....|+=+|.
T Consensus 204 ~--v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~---~~~~~~~~n~~~~~~~~~~~~~~G~~~T~ 275 (301)
T cd06565 204 L--VTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGAT---PPNDKHLENIKSWLKAAKKNGVQGILLTG 275 (301)
T ss_pred C--eEEEEecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5 33333332211 11 11111234444444 455555544 55554444444444432 23466666654
No 10
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=57.20 E-value=6.5 Score=27.91 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCee
Q 003545 248 QLVLQKKIVSRMLELGMTP 266 (811)
Q Consensus 248 q~~LQkkIl~RMReLGM~P 266 (811)
+.+...++++.|++.|++|
T Consensus 16 ~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 16 DPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 4567899999999999998
No 11
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=55.81 E-value=7 Score=42.07 Aligned_cols=124 Identities=20% Similarity=0.330 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCeeccc-CCCCCCchhH-----HhhCCCCceecCCCCC--------C-cCCCCCcccccccCCC---Cc
Q 003545 253 KKIVSRMLELGMTPVLP-SFAGNVPAAL-----KKIFPSANITRLGDWN--------T-VDRNPRWCCTYLLDPT---DP 314 (811)
Q Consensus 253 kkIl~RMReLGM~PVLP-gF~G~VP~~~-----~~~~P~A~i~~~~~W~--------g-F~~~p~y~~~~~LdP~---Dp 314 (811)
.+.+++-++-|+.+++= --.|.|++.= ...||.++.-+|..|. | +.+. ..+.-++|+ ++
T Consensus 27 ~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~---~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 27 DTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDK---TALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTS---SS--SSSGGSSSSE
T ss_pred HHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCC---CCCCCCCCCCCccH
Confidence 45666677788888752 2478888876 7789999988877664 1 2111 011223444 44
Q ss_pred hHHHHHHHHHHHHHHHhCCCC------cccccCCCCCCC----------CCCCCchHHHHHHHHHHHHHHccCCCceEE-
Q 003545 315 LFVEIGEAFIKQQILEYGDVT------DIYNCDTFNENT----------PPTNDTNYISSLGAAVYKAMSEGDKDAVWL- 377 (811)
Q Consensus 315 lF~~I~~~F~~eq~~~fG~~~------h~Y~~D~FnE~~----------pp~~d~~~L~~~~~~iy~am~~~dP~AvWv- 377 (811)
.| ...|+..+++.||+ . +||.+| ||.. |-.-..+.|.+-.-+.=++++++||+|.=+
T Consensus 104 ~y---~~ewV~~l~~~~g~-a~~~~gvk~y~lD--NEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~G 177 (239)
T PF12891_consen 104 VY---MDEWVNYLVNKYGN-ASTNGGVKYYSLD--NEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFG 177 (239)
T ss_dssp EE---HHHHHHHHHHHH---TTSTTS--EEEES--S-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hH---HHHHHHHHHHHHhc-cccCCCceEEEec--CchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEee
Confidence 44 56789999999999 6 899999 8763 211223356666777778999999998643
Q ss_pred --EecccCCC
Q 003545 378 --MQGWLFYS 385 (811)
Q Consensus 378 --mQgW~F~~ 385 (811)
.=||.+|.
T Consensus 178 P~~wgw~~y~ 187 (239)
T PF12891_consen 178 PVEWGWCGYF 187 (239)
T ss_dssp EEE-SHHHHH
T ss_pred chhhccceee
Confidence 34565443
No 12
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=55.61 E-value=1.3e+02 Score=33.01 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=85.0
Q ss_pred ccccCccccccChhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCC
Q 003545 161 VVTSSYSYVWWEWERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPL 240 (811)
Q Consensus 161 ~CT~sYT~a~WdW~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPL 240 (811)
.|.++| -+-++-++.++=|+-+||. +..+..+-=|.+-+. . -+|-- |-+.|..
T Consensus 15 ~~~~~y----~~~~~v~~~~~~~~~~~iP--~d~~~lD~~w~~~~~---~-----~~f~~-----------d~~~FPd-- 67 (308)
T cd06593 15 LSRSFY----YDEEEVNEFADGMRERNLP--CDVIHLDCFWMKEFQ---W-----CDFEF-----------DPDRFPD-- 67 (308)
T ss_pred HHcccC----CCHHHHHHHHHHHHHcCCC--eeEEEEecccccCCc---c-----eeeEE-----------CcccCCC--
Confidence 377777 6778888888888888764 444333433431110 0 01111 1112211
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeecc---cCCCCCCchhHHhh--------CCCCceecCCCCCCcCCCCCccccccc
Q 003545 241 AQNWLNQQLVLQKKIVSRMLELGMTPVL---PSFAGNVPAALKKI--------FPSANITRLGDWNTVDRNPRWCCTYLL 309 (811)
Q Consensus 241 p~~w~~~q~~LQkkIl~RMReLGM~PVL---PgF~G~VP~~~~~~--------~P~A~i~~~~~W~gF~~~p~y~~~~~L 309 (811)
=+++++++++.||+.++ |...-. .+.+++. .++-+......|.+- ..++
T Consensus 68 -----------~~~~i~~l~~~G~~~~~~~~P~i~~~-~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--------~~~~ 127 (308)
T cd06593 68 -----------PEGMLSRLKEKGFKVCLWINPYIAQK-SPLFKEAAEKGYLVKKPDGSVWQWDLWQPG--------MGII 127 (308)
T ss_pred -----------HHHHHHHHHHCCCeEEEEecCCCCCC-chhHHHHHHCCeEEECCCCCeeeecccCCC--------cccc
Confidence 25889999999999977 543211 1123322 122222222334331 3578
Q ss_pred CCCCchHHHHHHHHHHHHHHH---hCCCCcccccCCCCCCCCCCCC-----------chHHHHHHHHHHHHHHccCCC
Q 003545 310 DPTDPLFVEIGEAFIKQQILE---YGDVTDIYNCDTFNENTPPTND-----------TNYISSLGAAVYKAMSEGDKD 373 (811)
Q Consensus 310 dP~DplF~~I~~~F~~eq~~~---fG~~~h~Y~~D~FnE~~pp~~d-----------~~~L~~~~~~iy~am~~~dP~ 373 (811)
|.+.|.-.+ |+.++.+. +|- ..+-.| |+|..|.... ..|--..++++|+++++..++
T Consensus 128 Dftnp~a~~----w~~~~~~~~~~~Gi--d~~~~D-~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~ 198 (308)
T cd06593 128 DFTNPDACK----WYKDKLKPLLDMGV--DCFKTD-FGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGE 198 (308)
T ss_pred cCCCHHHHH----HHHHHHHHHHHhCC--cEEecC-CCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCC
Confidence 888887544 45444442 343 455666 5665554321 123446788999999888775
No 13
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=48.93 E-value=75 Score=35.82 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=80.3
Q ss_pred hhhhhhhHhHHhhcCCCc-----------cccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCC
Q 003545 173 WERWEKEIDWMALQGINL-----------PLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLA 241 (811)
Q Consensus 173 W~rWEreIDWMALnGvNl-----------pLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp 241 (811)
=+.-.|.||-||.+.+|. ||.+.+...++. .| |+ +=+|-.+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~-----~g-------------a~----------~~~~~YT 68 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSK-----KG-------------AY----------SPSEVYT 68 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhh-----cc-------------Cc----------CCCceEC
Confidence 355689999999999996 444444444332 12 00 0134444
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCeecccC--CCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHH
Q 003545 242 QNWLNQQLVLQKKIVSRMLELGMTPVLPS--FAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEI 319 (811)
Q Consensus 242 ~~w~~~q~~LQkkIl~RMReLGM~PVLPg--F~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I 319 (811)
++=+ |.|++--++.||+-| |- ..||.=. +.+-+|+..+.....|..+...+ +...|+|.+|.--++
T Consensus 69 ~~di-------~eiv~yA~~rgI~vI-PEID~PGH~~a-~~~~~p~l~~~~~~~~~~~~~~~---~~~~L~~~~~~t~~f 136 (348)
T cd06562 69 PEDV-------KEIVEYARLRGIRVI-PEIDTPGHTGS-WGQGYPELLTGCYAVWRKYCPEP---PCGQLNPTNPKTYDF 136 (348)
T ss_pred HHHH-------HHHHHHHHHcCCEEE-EeccCchhhHH-HHHhChhhhCCCCccccccccCC---CCccccCCChhHHHH
Confidence 4433 468888999999865 32 3445433 34456766554433354443221 234699999988888
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCC
Q 003545 320 GEAFIKQQILEYGDVTDIYNCDTFNE 345 (811)
Q Consensus 320 ~~~F~~eq~~~fG~~~h~Y~~D~FnE 345 (811)
-+.-++|..++|...--.-++|=++.
T Consensus 137 l~~vl~E~~~lF~~~~iHiGgDE~~~ 162 (348)
T cd06562 137 LKTLFKEVSELFPDKYFHLGGDEVNF 162 (348)
T ss_pred HHHHHHHHHHhcCCcceEeecCCCCC
Confidence 88888999999964223356665543
No 14
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.05 E-value=65 Score=37.23 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCeecccCCCCCCch--hHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHH
Q 003545 253 KKIVSRMLELGMTPVLPSFAGNVPA--ALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILE 330 (811)
Q Consensus 253 kkIl~RMReLGM~PVLPgF~G~VP~--~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~ 330 (811)
+-+.++.+++||+|=|--=..+|-. .+.+.+|+--+.. +.-..... ...++||.+.|.-.+--..-+..+.+.
T Consensus 107 ~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~-~~~~~~~~----r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 107 KPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRD-PGRPPTLG----RNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp HHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCC-TTSE-ECB----TTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeec-CCCCCcCc----ccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 4577888999999977543344322 2555666553322 22111110 124689999998666555566666667
Q ss_pred hCCCCcccccCCCCCCCCCCCCc--hHHHHHH---HHHHHHHHccCCCceEEEeccc
Q 003545 331 YGDVTDIYNCDTFNENTPPTNDT--NYISSLG---AAVYKAMSEGDKDAVWLMQGWL 382 (811)
Q Consensus 331 fG~~~h~Y~~D~FnE~~pp~~d~--~~L~~~~---~~iy~am~~~dP~AvWvmQgW~ 382 (811)
+|= +|...|--..+..+.+.. +-....- -.+++.|++..|+-++=.=+|=
T Consensus 182 ~gi--dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 182 WGI--DYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp TT---SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred cCC--CEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 875 688888644443332221 1122222 2477899999999999877763
No 15
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=41.88 E-value=4.7e+02 Score=29.66 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHH---------------------HHHHHHHcCC-----eecccCCCCCCchh-HH---hhCCCCc
Q 003545 238 GPLAQNWLNQQLVLQKK---------------------IVSRMLELGM-----TPVLPSFAGNVPAA-LK---KIFPSAN 287 (811)
Q Consensus 238 GPLp~~w~~~q~~LQkk---------------------Il~RMReLGM-----~PVLPgF~G~VP~~-~~---~~~P~A~ 287 (811)
.||-.---.++.+|+++ .++.|++-|. -|..|-|+-.+=.+ ++ +..-..+
T Consensus 69 sPL~~~T~~q~~~L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~ 148 (320)
T COG0276 69 SPLNVITRAQAAALEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR 148 (320)
T ss_pred CccHHHHHHHHHHHHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC
Confidence 38866666777788886 5789999998 47777777766643 22 2221111
Q ss_pred eecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCCCCCCC---CCCCCchHHHHHHHHHH
Q 003545 288 ITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENT---PPTNDTNYISSLGAAVY 364 (811)
Q Consensus 288 i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~fG~~~h~Y~~D~FnE~~---pp~~d~~~L~~~~~~iy 364 (811)
.+..+...+ +| +++|.|-+.=+.=+++-.+.+|. ++...+=.||=.- .--+|| |..++-+++.
T Consensus 149 --~~~~i~~I~---~~-------~~~p~yI~a~a~~I~~~~~~~~~-~~~~llfSaHglP~~~~~~GDp-Y~~q~~~t~~ 214 (320)
T COG0276 149 --GQPKISTIP---DY-------YDEPLYIEALADSIREKLAKHPR-DDDVLLFSAHGLPKRYIDEGDP-YPQQCQETTR 214 (320)
T ss_pred --CCCceEEec---Cc-------cCChHHHHHHHHHHHHHHHhcCC-CCeEEEEecCCCchhhhhcCCc-hHHHHHHHHH
Confidence 111111111 13 68899988877788888888883 4444444455210 011343 6555544444
Q ss_pred HHHHcc---CCCceEEEecccCCCCCCCCCchhHHHhhcCCCCC---CEEEEEc
Q 003545 365 KAMSEG---DKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLG---KMIVLDL 412 (811)
Q Consensus 365 ~am~~~---dP~AvWvmQgW~F~~~~~fW~~~~~~AlL~~Vp~~---~mlvLDL 412 (811)
.-+.+. .++-..--|+ -|.. .=|-.|.+...|..++.. +++|.=.
T Consensus 215 li~e~lg~~~~~~~~~~QS-~~G~--~~WL~P~t~~~l~~L~~~g~k~iiv~pi 265 (320)
T COG0276 215 LIAEALGLPEEEYDLTFQS-RFGP--EPWLQPYTDDLLEELGEKGVKKIIVVPI 265 (320)
T ss_pred HHHHHcCCCchheeEEeec-CCCC--CCCCCCCHHHHHHHHHhcCCCeEEEECC
Confidence 444433 4455555566 5554 449999999999988743 7887643
No 16
>PRK00035 hemH ferrochelatase; Reviewed
Probab=39.40 E-value=3.8e+02 Score=29.77 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCC-----eecccCCCCCC----chhHHhh--
Q 003545 237 GGPLAQNWLNQQLVLQKKI-----------------------VSRMLELGM-----TPVLPSFAGNV----PAALKKI-- 282 (811)
Q Consensus 237 GGPLp~~w~~~q~~LQkkI-----------------------l~RMReLGM-----~PVLPgF~G~V----P~~~~~~-- 282 (811)
|-||.....++...||++. |++|++-|. .|..|-|+.+. +..+.+.
T Consensus 69 gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~ 148 (333)
T PRK00035 69 GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALA 148 (333)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHH
Confidence 6788877777777777664 345555553 47777777554 4444222
Q ss_pred -CC-CCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCC-CcccccCCCCCC---CCCCCCchHH
Q 003545 283 -FP-SANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDV-TDIYNCDTFNEN---TPPTNDTNYI 356 (811)
Q Consensus 283 -~P-~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~fG~~-~h~Y~~D~FnE~---~pp~~d~~~L 356 (811)
++ ..++.- .+++ ..+|.|-+.-..-+++.-+.++.. .+.--+=.+|=. ....+|+ |-
T Consensus 149 ~~~~~~~i~~-------------i~~~---~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~-Y~ 211 (333)
T PRK00035 149 KLRLQPEIRF-------------IRSY---YDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDP-YQ 211 (333)
T ss_pred hcCCCCcEEE-------------eCCc---cCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCC-hH
Confidence 22 111111 1111 246667666555666555555531 001111122210 0011233 44
Q ss_pred ---HHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCC---CCEEEEE
Q 003545 357 ---SSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPL---GKMIVLD 411 (811)
Q Consensus 357 ---~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~AlL~~Vp~---~~mlvLD 411 (811)
...++.|.+.+.- +..- +..+|+-...+.=|..|.++..|..+.. .+++|+=
T Consensus 212 ~~~~~t~~~l~~~l~~--~~~~-~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P 269 (333)
T PRK00035 212 QQCEETARLLAEALGL--PDED-YDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVP 269 (333)
T ss_pred HHHHHHHHHHHHHhCC--CCCC-eEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEEC
Confidence 4456666665532 2222 4568874333446999999999988863 4666643
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.20 E-value=93 Score=32.89 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=52.0
Q ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHH
Q 003545 620 YDLVDI-TRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWL 683 (811)
Q Consensus 620 yDLVDv-tRQ~L~n~a~~~~~~~~~Ay~~kd~~~f~~~~~~~l~li~dlD~LL~t~~~flLg~Wl 683 (811)
+=+||- .-+-+++.++++.+++.+|++++|..+.+++-++=.++.+|+-+++.-+-.=++=.|+
T Consensus 66 ~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v 130 (201)
T COG1422 66 KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISV 130 (201)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444553 3366889999999999999999999999999999999999999998766555555444
No 18
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=34.94 E-value=1e+02 Score=34.75 Aligned_cols=229 Identities=15% Similarity=0.224 Sum_probs=117.7
Q ss_pred CCceEEEeccccccCCCCeEEEEeCCHHHHHHHHHHHHHHhccceee--eccCCC-CccccCCCCCCCCCCCCCCeeeec
Q 003545 75 GSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKYWCGAHVS--WEKTGG-FQIVSVPKPGSLPHVTDGGVKIQR 151 (811)
Q Consensus 75 g~d~F~i~~~~~~~~~~gkI~I~Gns~vala~Gln~YLk~~c~~~iS--W~~~~g-~~l~~~~lP~~LP~v~~~~v~~~t 151 (811)
..|.|+....-=..-+.|-+-|=|.+..+.+..+.-+-..+-=-||+ |. +.+ .+.. +.+ -|.+... +.-
T Consensus 46 ~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~-~~~~~~f~-i~~---~p~~~~a-~~~-- 117 (371)
T cd06388 46 TANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFP-TEGESQFV-LQL---RPSLRGA-LLS-- 117 (371)
T ss_pred CCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCcc-ccCCCceE-EEe---ChhhhhH-HHH--
Confidence 34666654321012245778899999999998888777665555554 32 111 1110 001 0212211 100
Q ss_pred CCcceeeccccccCccccccChhhhhhhHhHHhhcCCCccccc---cchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHH
Q 003545 152 PVPWNYYQNVVTSSYSYVWWEWERWEKEIDWMALQGINLPLAF---NGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWA 228 (811)
Q Consensus 152 ~~~~RY~lN~CT~sYT~a~WdW~rWEreIDWMALnGvNlpLA~---~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~ 228 (811)
.--.|--.-+++=|... -++.+=+..++....+|+.++.-- .+ +.=...+++++--+.++ .+|
T Consensus 118 -~i~~~~wk~vaiiYd~~-~~~~~lq~l~~~~~~~g~~v~~~~~~~~~-~~d~~~~L~~ik~~~~~--~ii--------- 183 (371)
T cd06388 118 -LLDHYEWNRFVFLYDTD-RGYSILQAIMEKAGQNGWQVSAICVENFN-DASYRRLLEDLDRRQEK--KFV--------- 183 (371)
T ss_pred -HHHhcCceEEEEEecCC-ccHHHHHHHHHhhHhcCCeeeeEEeccCC-cHHHHHHHHHhcccccE--EEE---------
Confidence 00112222334444333 235777788888888887766411 22 33455556655433222 111
Q ss_pred hhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCee-----cccCCCCCCchhHHh-hCCCCceecCCCCCCcCCCCC
Q 003545 229 RMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTP-----VLPSFAGNVPAALKK-IFPSANITRLGDWNTVDRNPR 302 (811)
Q Consensus 229 rMGNl~gwGGPLp~~w~~~q~~LQkkIl~RMReLGM~P-----VLPgF~G~VP~~~~~-~~P~A~i~~~~~W~gF~~~p~ 302 (811)
++-..+....|++..+++||.. ||-+. |+--.++.+ ++-+++|+. |
T Consensus 184 ----------------l~~~~~~~~~il~qa~~~gm~~~~y~~il~~~-~~~~~~l~~~~~g~~nitg------~----- 235 (371)
T cd06388 184 ----------------IDCEIERLQNILEQIVSVGKHVKGYHYIIANL-GFKDISLERFMHGGANVTG------F----- 235 (371)
T ss_pred ----------------EECCHHHHHHHHHHHHhcCccccceEEEEccC-ccccccHHHHhccCCceEE------E-----
Confidence 1112345679999999999986 66443 444444533 355555543 2
Q ss_pred cccccccCCCCchHHHHHHHHHHHHHHHh-CCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHc
Q 003545 303 WCCTYLLDPTDPLFVEIGEAFIKQQILEY-GDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSE 369 (811)
Q Consensus 303 y~~~~~LdP~DplF~~I~~~F~~eq~~~f-G~~~h~Y~~D~FnE~~pp~~d~~~L~~~~~~iy~am~~ 369 (811)
.+++|.+|.++++-+.|-+..++.| |. + .+|.....+.-++...+.+||++
T Consensus 236 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~-----~~~~~~aAl~YDaV~l~a~A~~~ 287 (371)
T cd06388 236 ----QLVDFNTPMVTKLMQRWKKLDQREYPGS-------E-----SPPKYTSALTYDGVLVMAEAFRN 287 (371)
T ss_pred ----EeecCCChhHHHHHHHHHhcCccccCCC-------C-----CCccchHHHHHHHHHHHHHHHHH
Confidence 2468888888776666654444444 33 2 13333344444555555556554
No 19
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=34.63 E-value=1e+02 Score=27.73 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=51.0
Q ss_pred hhhhhHhHHhhcCCCccccc--cchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHHH
Q 003545 175 RWEKEIDWMALQGINLPLAF--NGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQ 252 (811)
Q Consensus 175 rWEreIDWMALnGvNlpLA~--~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~LQ 252 (811)
-|++-+..|.--|+=-++.. +-.=..++..|.+. .++|.+ -|+. +-+-. |++.+.-++..+.+..
T Consensus 4 ~w~~i~~~L~~~~~l~~~D~~~l~~yc~~~~~~~~~---~~~l~~--~G~~------~~~~~--G~~~~nP~~~~~~~~~ 70 (100)
T PF05119_consen 4 EWKRIVPELKELGILSNLDVPLLERYCEAYSRYREA---EKELKK--EGFV------VETKN--GNPKKNPAVSILNKAM 70 (100)
T ss_pred HHHHHHHHHHHcCCCcHhHHHHHHHHHHHHHHHHHH---HHHHHH--cCce------eeCCC--CCcccCHHHHHHHHHH
Confidence 47788888777776555432 22223333333333 344443 1221 22222 3799999999999999
Q ss_pred HHHHHHHHHcCCeec
Q 003545 253 KKIVSRMLELGMTPV 267 (811)
Q Consensus 253 kkIl~RMReLGM~PV 267 (811)
++|.+-.++||++|.
T Consensus 71 ~~~~~l~~~lGLtP~ 85 (100)
T PF05119_consen 71 KQMRSLASELGLTPA 85 (100)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999999999995
No 20
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=32.24 E-value=89 Score=34.98 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCeecccCCC--CCCch--hH-HhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHH
Q 003545 250 VLQKKIVSRMLELGMTPVLPSFA--GNVPA--AL-KKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFI 324 (811)
Q Consensus 250 ~LQkkIl~RMReLGM~PVLPgF~--G~VP~--~~-~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~ 324 (811)
+...+|++.++++||..-.-+|- |.-.. .| +-.+|.++|+. |. +.||++|..+++-+.|-
T Consensus 197 ~~a~~il~qa~~lGm~~~~y~~i~T~l~~~~~~L~~~~~~~~niTg------F~---------l~d~~~~~v~~f~~~~~ 261 (333)
T cd06394 197 SMSHTILLKASELGMTSAFYKYILTTMDFPLLRLDSIVDDRSNILG------FS---------MFNQSHAFYQEFIRSLN 261 (333)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCcccccHHHhhcCCcceEE------EE---------eecCCcHHHHHHHHHHH
Confidence 45678999999999988777777 77777 44 33466666654 32 68999999988777766
Q ss_pred HHHHHHh
Q 003545 325 KQQILEY 331 (811)
Q Consensus 325 ~eq~~~f 331 (811)
+.+.+..
T Consensus 262 ~~~~~~~ 268 (333)
T cd06394 262 QSWRENC 268 (333)
T ss_pred Hhhhhhc
Confidence 6655443
No 21
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=31.36 E-value=18 Score=40.24 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHc-CCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHH
Q 003545 250 VLQKKIVSRMLEL-GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQI 328 (811)
Q Consensus 250 ~LQkkIl~RMReL-GM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~ 328 (811)
++++++.+++.++ |-.||.|||.|..|.. +++-+| |. -+|-...-+|+..=-+..
T Consensus 176 ~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G--------~~ttLG------Rg----------GsD~~A~~la~~l~a~~v 231 (306)
T cd04247 176 ELAQVLGEKITACENRVPVVTGFFGNVPGG--------LLSQIG------RG----------YTDLCAALCAVGLNADEL 231 (306)
T ss_pred HHHHHHHHHhhccCCceEEeeccEecCCCC--------CeEEeC------CC----------chHHHHHHHHHHcCCCEE
Confidence 4677777777765 6789999999977753 223322 21 234455556654433445
Q ss_pred HHhCCCCcccccCCC
Q 003545 329 LEYGDVTDIYNCDTF 343 (811)
Q Consensus 329 ~~fG~~~h~Y~~D~F 343 (811)
..+.+|+-+|.+||=
T Consensus 232 ~i~tdVdGvyt~DP~ 246 (306)
T cd04247 232 QIWKEVDGIFTADPR 246 (306)
T ss_pred EEeecCCeeECCCCC
Confidence 577788899999994
No 22
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=30.78 E-value=39 Score=27.53 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHcCCee
Q 003545 247 QQLVLQKKIVSRMLELGMTP 266 (811)
Q Consensus 247 ~q~~LQkkIl~RMReLGM~P 266 (811)
++.-|++||..||+++|+.-
T Consensus 24 K~~~l~rRl~~rm~~~~~~~ 43 (57)
T PF03705_consen 24 KRSLLERRLARRMRALGLPS 43 (57)
T ss_dssp GHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHHHHHcCCCC
Confidence 56789999999999999864
No 23
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=30.03 E-value=1.3e+02 Score=35.65 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=48.5
Q ss_pred hhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHHH
Q 003545 173 WERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQ 252 (811)
Q Consensus 173 W~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~LQ 252 (811)
|.||+.-|++|+--|+|.-=.-+ -|-|++-+ |=+| .+=++-.+-=
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~---------------------------g~~~----~~n~~~~~~Y 114 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQ---------------------------GDEL----TPNQQGIAFY 114 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeec----eeeeeeeC---------------------------CCCC----CCCHHHHHHH
Confidence 68999999999999998532111 13333321 1111 1111222334
Q ss_pred HHHHHHHHHcCCeecccCCCCCCchhHHhhC
Q 003545 253 KKIVSRMLELGMTPVLPSFAGNVPAALKKIF 283 (811)
Q Consensus 253 kkIl~RMReLGM~PVLPgF~G~VP~~~~~~~ 283 (811)
+++++.+++.||+|++==|-=-.|..|.+++
T Consensus 115 ~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~ 145 (474)
T PRK09852 115 RSVFEECKKYGIEPLVTLCHFDVPMHLVTEY 145 (474)
T ss_pred HHHHHHHHHcCCEEEEEeeCCCCCHHHHHhc
Confidence 6899999999999986666656788877655
No 24
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=29.43 E-value=1.1e+02 Score=36.35 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=69.3
Q ss_pred hhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHHH
Q 003545 173 WERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQ 252 (811)
Q Consensus 173 W~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~LQ 252 (811)
|.||++-|+.|+--|+|.==.-+ -|-|++-+ |=+|.+ =++-.+-=
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~---------------------------G~~~~~----N~~gl~~Y 112 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPK---------------------------GDEAQP----NEEGLKFY 112 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecc----cceeeccC---------------------------CCCCCC----CHHHHHHH
Confidence 68999999999999999532111 24444321 111211 11122334
Q ss_pred HHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhC
Q 003545 253 KKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYG 332 (811)
Q Consensus 253 kkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~eq~~~fG 332 (811)
+++++.+++.||+|++==|-=-.|..|.++| |.|.+ + .+. ..|.+ |-+..-+.||
T Consensus 113 ~~lid~l~~~GI~P~vTL~H~dlP~~L~~~y--------GGW~n--~-------~~~----~~F~~----Ya~~~f~~fg 167 (477)
T PRK15014 113 DDMFDELLKYNIEPVITLSHFEMPLHLVQQY--------GSWTN--R-------KVV----DFFVR----FAEVVFERYK 167 (477)
T ss_pred HHHHHHHHHcCCEEEEEeeCCCCCHHHHHhc--------CCCCC--h-------HHH----HHHHH----HHHHHHHHhc
Confidence 7999999999999998887777888887765 55522 1 011 24544 4455566788
Q ss_pred CCCcccccCCCCCC
Q 003545 333 DVTDIYNCDTFNEN 346 (811)
Q Consensus 333 ~~~h~Y~~D~FnE~ 346 (811)
+--+++. ||||.
T Consensus 168 drVk~Wi--T~NEp 179 (477)
T PRK15014 168 HKVKYWM--TFNEI 179 (477)
T ss_pred CcCCEEE--EecCc
Confidence 7445554 78884
No 25
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=28.05 E-value=1.5e+02 Score=27.57 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCc------CceEEEEeec-CCCCCCceEEEeccccccCCCCeEEEEeCCHHHHHHHHHHHHHH
Q 003545 45 ESAAKAVLQRLLPTHV------NSFQFKIVSK-DVCGGSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWYIKY 114 (811)
Q Consensus 45 ~~~~~~li~R~lp~~a------~~F~~~~~~~-~~~~g~d~F~i~~~~~~~~~~gkI~I~Gns~vala~Gln~YLk~ 114 (811)
.+-..+.+++.+|-.. ..-.+.+... +...+.+.|+|+- ..++|+|+|++...+.+|+.--+.-
T Consensus 37 ~~~l~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~E~Y~L~i------~~~~I~I~a~~~~G~~yg~qTL~Ql 107 (124)
T PF02838_consen 37 AERLQDILKRLTGISLSSSGSPNKIDIRLLLDDDAGLGEEGYRLSI------SPKGITIEASDPAGLFYGLQTLRQL 107 (124)
T ss_dssp HHHHHHHHHHHHTECCCECSETTSEEEEEECTTCCTSTTT-EEEEE------ESSEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccCCCCCceEEEeecCCCCCCCcceEEEE------ECCEEEEEEcCchHHHHHHHHHHHH
Confidence 4445555665555432 1223333221 1223678899874 3578999999999999999876553
No 26
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=27.18 E-value=1.5e+02 Score=29.22 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 003545 632 KLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLAS 673 (811)
Q Consensus 632 n~a~~~~~~~~~Ay~~kd~~~f~~~~~~~l~li~dlD~LL~t 673 (811)
..+..+|.++..-..+++.+.-+...+++++-++-||..|+.
T Consensus 6 ~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 6 TAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 456778999998888998888899999999999999999987
No 27
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=26.88 E-value=31 Score=38.23 Aligned_cols=42 Identities=31% Similarity=0.663 Sum_probs=30.0
Q ss_pred cCCCCCCCHHHHHHHHHH------HHHHHHHHHHc-CCeecccCCCCCCc
Q 003545 234 HGWGGPLAQNWLNQQLVL------QKKIVSRMLEL-GMTPVLPSFAGNVP 276 (811)
Q Consensus 234 ~gwGGPLp~~w~~~q~~L------QkkIl~RMReL-GM~PVLPgF~G~VP 276 (811)
.||||||.-.=-+++.-+ -+-|.+|+-|| ||++| -||--.||
T Consensus 10 gGwGGPL~i~pt~~KKivyiTGG~~p~i~~kiaeLTG~eaV-dGFk~~~p 58 (331)
T TIGR00825 10 GGWGGPLTVKPTEGKKIVYITAGTEPAIVDKLVNLTGWKAV-DGFKTGEP 58 (331)
T ss_pred CCcCCCEEEecCCCeEEEEEcCCCCCHHHHHHHHhhCCeec-ccccCCCC
Confidence 479999854333333111 45688999999 99987 78888888
No 28
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=25.89 E-value=99 Score=29.47 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCceEEEeccccccCCCCeEEEEeCCHHHHHHHHHHH
Q 003545 75 GSSCFLIDNYKRTSQNEPEITIKGTTAVEITSGLHWY 111 (811)
Q Consensus 75 g~d~F~i~~~~~~~~~~gkI~I~Gns~vala~Gln~Y 111 (811)
+.|-|.|... ...+++.|+|.|+|...+.+|..++
T Consensus 88 ~~EGy~I~~v--~~~~~~~lvI~g~~~~G~LYGvF~l 122 (122)
T PF03648_consen 88 GEEGYIIRTV--EIGGKNVLVIAGKTERGVLYGVFHL 122 (122)
T ss_dssp STT-EEEEEE--ESSSSEEEEEEESSHHHHHHHHHHH
T ss_pred CCccEEEEEE--ecCCCCEEEEEeCCCcEEEEEEeeC
Confidence 6688988752 1235678999999999999999885
No 29
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.39 E-value=3.9e+02 Score=29.43 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCeecc---cCCCCCCchhHHhh-CCCCceec-------CCC-CCCcCCCCCcccccccCCCCchHHHHH
Q 003545 253 KKIVSRMLELGMTPVL---PSFAGNVPAALKKI-FPSANITR-------LGD-WNTVDRNPRWCCTYLLDPTDPLFVEIG 320 (811)
Q Consensus 253 kkIl~RMReLGM~PVL---PgF~G~VP~~~~~~-~P~A~i~~-------~~~-W~gF~~~p~y~~~~~LdP~DplF~~I~ 320 (811)
+++++++++.||++++ |.+. .-.+.+++. -.+.=|.. .+. |.| .+.++|.+.|.-.+.=
T Consensus 73 ~~mi~~l~~~G~k~~l~i~P~i~-~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g--------~~~~~Dftnp~a~~w~ 143 (303)
T cd06592 73 KGMIDQLHDLGFRVTLWVHPFIN-TDSENFREAVEKGYLVSEPSGDIPALTRWWNG--------TAAVLDFTNPEAVDWF 143 (303)
T ss_pred HHHHHHHHHCCCeEEEEECCeeC-CCCHHHHhhhhCCeEEECCCCCCCcccceecC--------CcceEeCCCHHHHHHH
Confidence 5788999999999998 7543 223345542 11111111 122 222 2468999999855443
Q ss_pred HHHHHHHHHHhCCCCcccccCCCCCC
Q 003545 321 EAFIKQQILEYGDVTDIYNCDTFNEN 346 (811)
Q Consensus 321 ~~F~~eq~~~fG~~~h~Y~~D~FnE~ 346 (811)
+.-+++.....|- ..+-+| |+|.
T Consensus 144 ~~~~~~~~~~~Gv--dg~w~D-~~E~ 166 (303)
T cd06592 144 LSRLKSLQEKYGI--DSFKFD-AGEA 166 (303)
T ss_pred HHHHHHHHHHhCC--cEEEeC-CCCc
Confidence 3333333334465 566667 6775
No 30
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.35 E-value=37 Score=25.38 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.4
Q ss_pred HHcCCCHHHHhhhcC
Q 003545 206 MNFNVTMEDLNDFFS 220 (811)
Q Consensus 206 ~~lG~t~~ei~~ff~ 220 (811)
++.|+|-+||++|+.
T Consensus 13 ~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 13 KESGLSKEEIREFLE 27 (30)
T ss_dssp HHTT--HHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 589999999999974
No 31
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=25.24 E-value=36 Score=37.66 Aligned_cols=72 Identities=31% Similarity=0.423 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHcCCeecccCCCCCCchhHHhhCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHH
Q 003545 247 QQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQ 326 (811)
Q Consensus 247 ~q~~LQkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F~~e 326 (811)
....+++++. ++-+-|..||+|||-|.=+. -+++..| |. -.|-.-.-||..+=-+
T Consensus 169 ~~~~i~~~l~-~ll~~~~vpVv~Gfig~~~~--------g~~ttlg------Rg----------gsD~~A~~~A~~l~a~ 223 (298)
T cd04244 169 TYERVRKRLL-PMLEDGKIPVVTGFIGATED--------GAITTLG------RG----------GSDYSATIIGAALDAD 223 (298)
T ss_pred HHHHHHHHHH-HHhhcCCEEEEeCccccCCC--------CCEEEec------CC----------ChHHHHHHHHHHcCCC
Confidence 4555666665 34445999999999885322 2233322 11 1233444455444333
Q ss_pred HHHHhCCCCcccccCCC
Q 003545 327 QILEYGDVTDIYNCDTF 343 (811)
Q Consensus 327 q~~~fG~~~h~Y~~D~F 343 (811)
....+-+|+-+|.+||=
T Consensus 224 ~l~i~tdV~Gv~~~dP~ 240 (298)
T cd04244 224 EIWIWKDVDGVMTADPR 240 (298)
T ss_pred EEEEEECCCCCCCCCCC
Confidence 34456667889999983
No 32
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=24.59 E-value=2.5e+02 Score=28.01 Aligned_cols=53 Identities=30% Similarity=0.311 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcc
Q 003545 619 RYDLVDITRQALSKLANQVYMDAVIAFQHK---DASAFNIHSQKFLQLIKDIDELLAS 673 (811)
Q Consensus 619 ryDLVDvtRQ~L~n~a~~~~~~~~~Ay~~k---d~~~f~~~~~~~l~li~dlD~LL~t 673 (811)
|-+|-|+.|++=+-..+ ..++..||+.. |.+.|...-..|=+.+.++|.||.+
T Consensus 73 r~~l~~il~sIg~la~N--in~i~~Aa~~~~~pd~e~f~aER~~fGk~fA~ld~lLr~ 128 (147)
T PF07328_consen 73 RQKLEDILRSIGGLATN--INQILKAANRTPRPDYEAFRAERKAFGKEFADLDALLRS 128 (147)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776443222 24677788855 8899999999999999999998864
No 33
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.35 E-value=2.5e+02 Score=31.52 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCeec----ccCCCCCCchhHHh-hCCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHHHH
Q 003545 249 LVLQKKIVSRMLELGMTPV----LPSFAGNVPAALKK-IFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAF 323 (811)
Q Consensus 249 ~~LQkkIl~RMReLGM~PV----LPgF~G~VP~~~~~-~~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~~F 323 (811)
.+.-..|++.++++||.|- +-+-.|+--..|.+ ++.+++|+. | .+.+|.+|..+++-+.|
T Consensus 186 ~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~~~~~~nitg------~---------~~~~~~~~~v~~f~~~~ 250 (370)
T cd06389 186 RDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSG------F---------QIVDYDDPLVSKFIQRW 250 (370)
T ss_pred HHHHHHHHHHHHHhCccccceEEEEccCCccccchhhhccCCcceEE------E---------EEecCCCchHHHHHHHH
Confidence 3456889999999999876 22333554445532 255666543 2 25678888876655555
No 34
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=21.92 E-value=1.2e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 003545 652 AFNIHSQKFLQLIKDIDELLASNDNFLLG 680 (811)
Q Consensus 652 ~f~~~~~~~l~li~dlD~LL~t~~~flLg 680 (811)
..+..-+++.+.++.+|..|+.++ |++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~-fl~G 30 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGP-FLFG 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS-BTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCC
Confidence 456777889999999999999998 7665
No 35
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=21.24 E-value=67 Score=26.80 Aligned_cols=18 Identities=6% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHhhhc
Q 003545 202 QKVFMNFNVTMEDLNDFF 219 (811)
Q Consensus 202 ~~v~~~lG~t~~ei~~ff 219 (811)
-+.++++|||-+||++++
T Consensus 7 I~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 7 IRRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHHTT--HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 456889999999999999
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=20.24 E-value=2.6e+02 Score=33.08 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=51.6
Q ss_pred hhhhhhhHhHHhhcCCCccccccchHHHHHHHHHHcCCCHHHHhhhcCCchhhhHHhhccccCCCCCCCHHHHHHHHHH-
Q 003545 173 WERWEKEIDWMALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVL- 251 (811)
Q Consensus 173 W~rWEreIDWMALnGvNlpLA~~GqEaVW~~v~~~lG~t~~ei~~ff~GPAflaW~rMGNl~gwGGPLp~~w~~~q~~L- 251 (811)
|.||++-|+.|+--|+|.==.- --|-|++=+ |=+|.+ .+..|
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfS----IsWsRI~P~---------------------------G~~~~~------N~~gl~ 108 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTS----IAWTRIFPQ---------------------------GDELEP------NEEGLQ 108 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEec----cchhhcCcC---------------------------CCCCCC------CHHHHH
Confidence 5899999999999999853211 125554431 112211 23333
Q ss_pred -HHHHHHHHHHcCCeecccCCCCCCchhHHhhC
Q 003545 252 -QKKIVSRMLELGMTPVLPSFAGNVPAALKKIF 283 (811)
Q Consensus 252 -QkkIl~RMReLGM~PVLPgF~G~VP~~~~~~~ 283 (811)
=+++++.+++-||+|++==|-=-.|..|.+++
T Consensus 109 ~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~y 141 (476)
T PRK09589 109 FYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEY 141 (476)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhc
Confidence 37999999999999998888778899998765
No 37
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=20.22 E-value=77 Score=28.86 Aligned_cols=22 Identities=9% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHhhhcC
Q 003545 199 AIWQKVFMNFNVTMEDLNDFFS 220 (811)
Q Consensus 199 aVW~~v~~~lG~t~~ei~~ff~ 220 (811)
+=|.++-++||||+.||+.+=.
T Consensus 14 ~~Wk~lar~LG~s~~eI~~ie~ 35 (86)
T cd08777 14 KKWKRCARKLGFTESEIEEIDH 35 (86)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4499999999999999998753
No 38
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.18 E-value=7.3e+02 Score=27.64 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCeecc---cCCCCCCchhHHhh--------CCCCceecCCCCCCcCCCCCcccccccCCCCchHHHHHH
Q 003545 253 KKIVSRMLELGMTPVL---PSFAGNVPAALKKI--------FPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGE 321 (811)
Q Consensus 253 kkIl~RMReLGM~PVL---PgF~G~VP~~~~~~--------~P~A~i~~~~~W~gF~~~p~y~~~~~LdP~DplF~~I~~ 321 (811)
++.++.+.+.|++.|+ |++.--.+.-+++. .++-+.....-|.+. +.++|-+.|. |+
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~--------~~~~Dftnp~----a~ 141 (317)
T cd06594 74 DELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFD--------CGVLDLTNPA----AR 141 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCC--------ceeeecCCHH----HH
Confidence 5788899999999875 44432122212322 111111111234332 2478888887 44
Q ss_pred HHHHHHHH-H---hCCCCcccccCCCCCCCCCCC---C---c-----hHHHHHHHHHHHHHHccCC
Q 003545 322 AFIKQQIL-E---YGDVTDIYNCDTFNENTPPTN---D---T-----NYISSLGAAVYKAMSEGDK 372 (811)
Q Consensus 322 ~F~~eq~~-~---fG~~~h~Y~~D~FnE~~pp~~---d---~-----~~L~~~~~~iy~am~~~dP 372 (811)
.++.++.+ . .|- +.+-.| |+|..|+.. + . .|--..++++|+++++..|
T Consensus 142 ~ww~~~~~~~~~~~Gv--dg~w~D-~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~ 204 (317)
T cd06594 142 DWFKQVIKEMLLDLGL--SGWMAD-FGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGK 204 (317)
T ss_pred HHHHHHHHHHhhhcCC--cEEEec-CCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 45544433 2 344 334556 688766522 1 1 1455678889999888764
Done!