Query 003547
Match_columns 811
No_of_seqs 414 out of 2045
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0956 PHD finger protein AF1 99.8 7.7E-20 1.7E-24 207.0 0.9 133 592-744 31-183 (900)
2 KOG0954 PHD finger protein [Ge 99.8 1.1E-19 2.5E-24 207.1 1.7 134 593-745 296-440 (893)
3 COG5141 PHD zinc finger-contai 99.7 6.4E-19 1.4E-23 194.0 2.1 136 592-748 217-369 (669)
4 PF13771 zf-HC5HC2H: PHD-like 99.7 2.2E-18 4.8E-23 153.2 4.5 79 663-742 1-90 (90)
5 PF13832 zf-HC5HC2H_2: PHD-zin 99.7 7.6E-18 1.6E-22 155.3 3.7 99 624-741 2-110 (110)
6 KOG0955 PHD finger protein BR1 99.6 3.7E-17 8.1E-22 196.5 3.1 133 592-744 243-396 (1051)
7 KOG0957 PHD finger protein [Ge 99.5 2.1E-15 4.5E-20 166.8 -0.1 132 592-744 143-301 (707)
8 KOG4362 Transcriptional regula 99.3 6.7E-12 1.5E-16 145.7 9.2 158 646-805 318-494 (684)
9 smart00504 Ubox Modified RING 99.0 3.2E-10 6.9E-15 94.2 4.5 62 14-75 1-62 (63)
10 TIGR00599 rad18 DNA repair pro 99.0 4E-10 8.7E-15 125.6 5.7 76 6-81 18-93 (397)
11 PF15227 zf-C3HC4_4: zinc fing 98.9 4.3E-10 9.4E-15 88.4 2.5 38 17-54 1-42 (42)
12 KOG0287 Postreplication repair 98.9 4.4E-10 9.6E-15 120.9 3.0 75 7-81 16-90 (442)
13 PF04564 U-box: U-box domain; 98.8 2.8E-09 6.1E-14 92.7 4.3 68 12-79 2-70 (73)
14 KOG2177 Predicted E3 ubiquitin 98.8 5.4E-09 1.2E-13 105.6 6.1 105 6-113 5-112 (386)
15 PF14835 zf-RING_6: zf-RING of 98.8 2.4E-09 5.2E-14 91.2 1.7 63 9-73 2-65 (65)
16 COG5432 RAD18 RING-finger-cont 98.6 1.7E-08 3.6E-13 107.1 3.4 73 8-80 19-91 (391)
17 PLN03208 E3 ubiquitin-protein 98.6 2E-08 4.3E-13 102.4 3.4 55 10-64 14-84 (193)
18 PF13923 zf-C3HC4_2: Zinc fing 98.5 5.2E-08 1.1E-12 74.9 1.9 38 17-54 1-39 (39)
19 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.7E-07 3.6E-12 75.7 2.2 47 13-59 1-48 (50)
20 PF00097 zf-C3HC4: Zinc finger 98.3 3E-07 6.4E-12 70.8 2.1 38 17-54 1-41 (41)
21 PF13639 zf-RING_2: Ring finge 98.3 2.2E-07 4.7E-12 73.0 0.6 40 16-55 2-44 (44)
22 KOG0317 Predicted E3 ubiquitin 98.3 4.9E-07 1.1E-11 96.5 3.4 51 12-62 237-287 (293)
23 PHA02929 N1R/p28-like protein; 98.2 6E-07 1.3E-11 94.6 3.6 48 12-59 172-227 (238)
24 KOG0823 Predicted E3 ubiquitin 98.2 5.6E-07 1.2E-11 93.6 2.0 52 12-63 45-99 (230)
25 KOG1084 Transcription factor T 98.2 6.5E-07 1.4E-11 100.0 2.3 83 659-742 238-321 (375)
26 cd00162 RING RING-finger (Real 98.2 1.6E-06 3.4E-11 65.8 3.2 42 16-57 1-44 (45)
27 KOG0320 Predicted E3 ubiquitin 98.1 1.1E-06 2.4E-11 88.3 2.2 52 12-63 129-182 (187)
28 PF13445 zf-RING_UBOX: RING-ty 98.1 1.3E-06 2.9E-11 69.4 1.7 35 17-52 1-43 (43)
29 smart00184 RING Ring finger. E 98.0 4.9E-06 1.1E-10 60.9 3.4 38 17-54 1-39 (39)
30 PF14634 zf-RING_5: zinc-RING 98.0 4.7E-06 1E-10 65.8 3.5 41 16-56 1-44 (44)
31 KOG2660 Locus-specific chromos 98.0 3.6E-06 7.7E-11 91.4 2.9 72 6-77 7-83 (331)
32 KOG0311 Predicted E3 ubiquitin 98.0 2E-06 4.3E-11 94.0 0.6 70 8-77 37-109 (381)
33 PHA02926 zinc finger-like prot 97.9 9.2E-06 2E-10 84.5 3.5 49 11-59 167-230 (242)
34 KOG2164 Predicted E3 ubiquitin 97.8 6.3E-06 1.4E-10 93.7 2.1 53 14-66 186-243 (513)
35 COG5574 PEX10 RING-finger-cont 97.6 3.2E-05 6.9E-10 82.1 2.5 49 12-60 213-263 (271)
36 PF12678 zf-rbx1: RING-H2 zinc 97.4 8.3E-05 1.8E-09 65.1 2.7 40 16-55 21-73 (73)
37 TIGR00570 cdk7 CDK-activating 97.4 0.00019 4.1E-09 78.4 6.0 62 14-75 3-74 (309)
38 KOG0978 E3 ubiquitin ligase in 97.4 5.5E-05 1.2E-09 89.6 1.5 58 8-65 637-695 (698)
39 KOG4159 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 82.8 3.2 51 10-60 80-130 (398)
40 KOG4367 Predicted Zn-finger pr 97.2 0.00017 3.6E-09 80.7 2.7 102 11-115 1-193 (699)
41 KOG0297 TNF receptor-associate 96.9 0.00062 1.4E-08 76.8 3.6 69 9-77 16-86 (391)
42 KOG0824 Predicted E3 ubiquitin 96.9 0.00064 1.4E-08 73.6 3.4 48 14-61 7-55 (324)
43 COG5152 Uncharacterized conser 96.9 0.00051 1.1E-08 70.5 2.5 60 14-74 196-255 (259)
44 COG5222 Uncharacterized conser 96.9 0.00097 2.1E-08 71.9 4.4 64 15-78 275-341 (427)
45 KOG0802 E3 ubiquitin ligase [P 96.9 0.00039 8.4E-09 81.3 1.6 47 12-58 289-340 (543)
46 PF11789 zf-Nse: Zinc-finger o 96.4 0.0016 3.4E-08 54.9 1.6 42 12-53 9-53 (57)
47 KOG1813 Predicted E3 ubiquitin 96.4 0.0015 3.3E-08 70.6 1.6 45 15-59 242-286 (313)
48 COG5243 HRD1 HRD ubiquitin lig 96.2 0.0026 5.6E-08 70.5 2.4 47 12-58 285-344 (491)
49 KOG2879 Predicted E3 ubiquitin 96.0 0.0048 1E-07 66.3 3.1 48 12-59 237-287 (298)
50 KOG4628 Predicted E3 ubiquitin 95.9 0.0039 8.4E-08 69.3 2.3 45 15-59 230-278 (348)
51 COG5540 RING-finger-containing 95.8 0.005 1.1E-07 66.9 2.6 47 13-59 322-372 (374)
52 PF12861 zf-Apc11: Anaphase-pr 95.6 0.012 2.6E-07 53.5 3.6 47 13-59 20-82 (85)
53 KOG1002 Nucleotide excision re 95.4 0.007 1.5E-07 69.6 1.9 49 12-60 534-587 (791)
54 KOG4172 Predicted E3 ubiquitin 94.1 0.014 2.9E-07 49.2 -0.1 45 15-59 8-54 (62)
55 KOG0804 Cytoplasmic Zn-finger 94.0 0.023 5.1E-07 64.6 1.5 47 10-58 171-221 (493)
56 KOG4265 Predicted E3 ubiquitin 93.9 0.034 7.3E-07 61.9 2.5 48 12-59 288-336 (349)
57 KOG1039 Predicted E3 ubiquitin 93.8 0.035 7.5E-07 62.1 2.3 48 12-59 159-221 (344)
58 KOG0828 Predicted E3 ubiquitin 92.7 0.067 1.5E-06 61.5 2.5 48 12-59 569-634 (636)
59 KOG0956 PHD finger protein AF1 92.6 0.24 5.1E-06 59.1 6.7 137 658-811 30-174 (900)
60 KOG3039 Uncharacterized conser 92.3 0.098 2.1E-06 55.8 2.9 51 13-63 220-274 (303)
61 KOG0825 PHD Zn-finger protein 92.0 0.025 5.5E-07 67.7 -2.0 47 14-60 123-172 (1134)
62 smart00249 PHD PHD zinc finger 91.6 0.16 3.6E-06 38.7 2.7 44 694-741 1-47 (47)
63 KOG4185 Predicted E3 ubiquitin 90.9 0.23 5E-06 53.6 4.1 63 14-76 3-77 (296)
64 KOG1734 Predicted RING-contain 90.7 0.069 1.5E-06 57.6 -0.2 66 13-78 223-306 (328)
65 KOG1645 RING-finger-containing 90.1 0.15 3.3E-06 57.7 1.8 59 13-71 3-68 (463)
66 PF14570 zf-RING_4: RING/Ubox 89.5 0.26 5.7E-06 40.6 2.3 42 17-58 1-47 (48)
67 KOG1785 Tyrosine kinase negati 89.1 0.19 4E-06 56.8 1.6 44 16-59 371-416 (563)
68 KOG4692 Predicted E3 ubiquitin 89.1 0.22 4.8E-06 55.5 2.1 48 12-59 420-467 (489)
69 COG5194 APC11 Component of SCF 87.8 0.46 1E-05 43.0 2.8 30 31-60 53-82 (88)
70 KOG3161 Predicted E3 ubiquitin 87.4 0.33 7.2E-06 57.6 2.2 41 10-52 7-51 (861)
71 KOG1080 Histone H3 (Lys4) meth 87.3 0.24 5.1E-06 62.1 1.0 107 594-723 599-709 (1005)
72 KOG0827 Predicted E3 ubiquitin 86.8 0.44 9.5E-06 53.9 2.7 49 15-63 5-60 (465)
73 PF04641 Rtf2: Rtf2 RING-finge 86.8 0.5 1.1E-05 50.8 3.0 52 11-63 110-165 (260)
74 PF11793 FANCL_C: FANCL C-term 86.3 0.1 2.2E-06 45.6 -2.0 46 14-59 2-66 (70)
75 PF14447 Prok-RING_4: Prokaryo 86.3 0.37 8.1E-06 40.7 1.3 47 12-60 5-51 (55)
76 KOG1001 Helicase-like transcri 85.6 0.45 9.9E-06 57.7 2.2 44 15-59 455-500 (674)
77 KOG4275 Predicted E3 ubiquitin 85.1 0.18 3.9E-06 55.0 -1.3 41 14-58 300-341 (350)
78 smart00744 RINGv The RING-vari 84.8 0.88 1.9E-05 37.2 2.8 40 16-55 1-49 (49)
79 KOG3002 Zn finger protein [Gen 84.2 1.6 3.4E-05 48.4 5.3 65 11-81 45-110 (299)
80 KOG3800 Predicted E3 ubiquitin 83.2 1 2.2E-05 49.4 3.2 49 16-64 2-56 (300)
81 KOG1571 Predicted E3 ubiquitin 82.4 0.5 1.1E-05 52.9 0.7 48 9-59 300-347 (355)
82 KOG1084 Transcription factor T 81.2 0.41 8.8E-06 54.3 -0.6 86 659-744 146-251 (375)
83 PF05290 Baculo_IE-1: Baculovi 81.1 1.2 2.7E-05 43.8 2.7 49 13-61 79-134 (140)
84 KOG0826 Predicted E3 ubiquitin 80.1 0.98 2.1E-05 50.2 1.9 47 12-58 298-345 (357)
85 PF13832 zf-HC5HC2H_2: PHD-zin 79.8 2.2 4.7E-05 39.6 3.9 91 694-803 2-96 (110)
86 COG5219 Uncharacterized conser 77.9 0.99 2.2E-05 55.8 1.2 46 14-59 1469-1523(1525)
87 KOG4739 Uncharacterized protei 77.7 0.96 2.1E-05 48.3 0.9 45 15-61 4-50 (233)
88 COG5236 Uncharacterized conser 74.4 2.1 4.6E-05 47.9 2.5 53 6-58 53-107 (493)
89 KOG2817 Predicted E3 ubiquitin 73.7 2.2 4.8E-05 48.6 2.5 48 11-58 331-384 (394)
90 KOG3039 Uncharacterized conser 73.5 1.8 3.9E-05 46.6 1.6 34 13-46 42-75 (303)
91 KOG2930 SCF ubiquitin ligase, 73.5 2.4 5.1E-05 40.3 2.2 27 31-57 80-106 (114)
92 KOG0954 PHD finger protein [Ge 73.3 2.8 6E-05 50.9 3.2 117 621-765 270-388 (893)
93 KOG3970 Predicted E3 ubiquitin 72.9 6.4 0.00014 42.1 5.4 68 10-77 46-123 (299)
94 KOG1493 Anaphase-promoting com 72.7 1.7 3.8E-05 39.2 1.1 44 16-59 22-81 (84)
95 PF00628 PHD: PHD-finger; Int 72.6 2.9 6.3E-05 33.5 2.3 28 694-723 1-31 (51)
96 COG5175 MOT2 Transcriptional r 71.7 2.6 5.7E-05 47.1 2.4 52 12-63 12-68 (480)
97 KOG0298 DEAD box-containing he 65.8 2.4 5.1E-05 54.3 0.6 51 8-58 1147-1198(1394)
98 KOG2114 Vacuolar assembly/sort 64.6 3.9 8.4E-05 50.5 2.1 41 14-57 840-881 (933)
99 KOG1814 Predicted E3 ubiquitin 63.8 6.3 0.00014 45.3 3.4 45 12-56 182-237 (445)
100 KOG1941 Acetylcholine receptor 62.6 3.3 7.3E-05 47.1 1.0 44 13-56 364-413 (518)
101 PF10367 Vps39_2: Vacuolar sor 61.3 3 6.5E-05 37.8 0.3 32 11-42 75-108 (109)
102 KOG1812 Predicted E3 ubiquitin 60.1 11 0.00024 43.0 4.6 42 14-55 146-197 (384)
103 KOG2932 E3 ubiquitin ligase in 58.6 5.3 0.00012 44.4 1.6 41 16-58 92-133 (389)
104 PF02891 zf-MIZ: MIZ/SP-RING z 57.7 4 8.6E-05 33.6 0.4 43 14-57 2-50 (50)
105 PHA03096 p28-like protein; Pro 57.0 6.4 0.00014 43.4 2.0 42 15-56 179-231 (284)
106 PF14446 Prok-RING_1: Prokaryo 52.8 7.7 0.00017 32.9 1.3 36 692-729 5-44 (54)
107 KOG1428 Inhibitor of type V ad 51.4 14 0.00031 48.1 3.8 48 12-59 3484-3544(3738)
108 KOG1940 Zn-finger protein [Gen 50.7 11 0.00024 41.4 2.5 44 13-56 157-204 (276)
109 KOG4299 PHD Zn-finger protein 49.6 5.8 0.00013 47.5 0.2 28 693-722 254-284 (613)
110 KOG0955 PHD finger protein BR1 48.4 13 0.00029 47.4 3.0 146 619-799 216-367 (1051)
111 KOG0957 PHD finger protein [Ge 47.1 18 0.0004 42.6 3.6 159 611-799 108-279 (707)
112 COG5220 TFB3 Cdk activating ki 47.0 6.2 0.00013 42.5 -0.1 47 13-59 9-64 (314)
113 KOG1973 Chromatin remodeling p 44.3 12 0.00026 40.9 1.5 31 692-722 219-251 (274)
114 PF10367 Vps39_2: Vacuolar sor 39.3 16 0.00034 33.1 1.3 29 693-722 79-108 (109)
115 PF08746 zf-RING-like: RING-li 39.0 29 0.00062 27.8 2.6 38 17-54 1-43 (43)
116 COG5109 Uncharacterized conser 38.9 20 0.00043 40.2 2.2 47 11-57 333-385 (396)
117 KOG0383 Predicted helicase [Ge 37.5 23 0.00049 43.7 2.6 77 711-799 1-81 (696)
118 KOG1815 Predicted E3 ubiquitin 36.6 21 0.00046 41.4 2.1 36 12-47 68-104 (444)
119 COG5194 APC11 Component of SCF 36.2 12 0.00026 34.3 0.0 44 693-736 21-82 (88)
120 KOG1701 Focal adhesion adaptor 35.4 31 0.00066 40.2 3.0 104 692-811 334-455 (468)
121 KOG4445 Uncharacterized conser 34.5 13 0.00027 41.4 -0.1 48 13-60 114-187 (368)
122 PF07191 zinc-ribbons_6: zinc- 34.5 5 0.00011 35.7 -2.6 41 14-59 1-41 (70)
123 COG3813 Uncharacterized protei 32.7 38 0.00083 30.6 2.6 37 31-69 26-62 (84)
124 PF10272 Tmpp129: Putative tra 32.6 27 0.00059 39.8 2.1 30 32-61 311-353 (358)
125 PF07800 DUF1644: Protein of u 31.3 22 0.00048 36.3 1.0 21 13-33 1-21 (162)
126 KOG1100 Predicted E3 ubiquitin 28.8 23 0.00049 37.4 0.6 39 17-59 161-200 (207)
127 PF03854 zf-P11: P-11 zinc fin 28.1 21 0.00046 29.8 0.2 31 29-59 15-46 (50)
128 KOG3268 Predicted E3 ubiquitin 27.4 42 0.0009 35.0 2.2 49 12-60 163-229 (234)
129 PF07227 DUF1423: Protein of u 26.1 49 0.0011 38.7 2.7 47 608-673 121-167 (446)
130 KOG2169 Zn-finger transcriptio 25.2 51 0.0011 40.3 2.8 68 10-77 302-374 (636)
131 PF10497 zf-4CXXC_R1: Zinc-fin 24.2 62 0.0013 30.7 2.5 46 13-58 6-71 (105)
132 PF14353 CpXC: CpXC protein 23.7 63 0.0014 30.9 2.6 47 14-60 1-50 (128)
133 PF05883 Baculo_RING: Baculovi 23.4 38 0.00082 33.7 1.0 33 14-46 26-67 (134)
134 PF03107 C1_2: C1 domain; Int 23.2 56 0.0012 24.1 1.6 26 694-721 2-30 (30)
135 KOG3579 Predicted E3 ubiquitin 23.1 27 0.00059 38.7 -0.1 35 13-47 267-305 (352)
136 PF13831 PHD_2: PHD-finger; PD 23.0 9.5 0.00021 29.5 -2.6 25 592-616 11-35 (36)
137 COG5034 TNG2 Chromatin remodel 21.5 46 0.001 36.4 1.3 33 689-722 218-253 (271)
138 KOG3113 Uncharacterized conser 20.3 90 0.0019 34.3 3.1 49 12-62 109-161 (293)
139 KOG3899 Uncharacterized conser 20.1 51 0.0011 36.8 1.2 31 32-62 325-368 (381)
No 1
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.76 E-value=7.7e-20 Score=206.96 Aligned_cols=133 Identities=26% Similarity=0.450 Sum_probs=111.2
Q ss_pred cccccccchhhHHhh-hhcCCcccCCc--CCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhc
Q 003547 592 GVRGSSDIGVLEKLH-KTQRGALRKCE--TLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTE 668 (811)
Q Consensus 592 ~~~v~~~~~~i~~~~-~~~~~~lrpC~--s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CAL 668 (811)
.|-||.-||+| .. -.--|.+|+|+ +.+.+..|.||+..+ |+|+++.+| -|+|++|||
T Consensus 31 sVAVHQaCYGI--vqVPtGpWfCrKCesqeraarvrCeLCP~kd-----GALKkTDn~-------------GWAHVVCAL 90 (900)
T KOG0956|consen 31 SVAVHQACYGI--VQVPTGPWFCRKCESQERAARVRCELCPHKD-----GALKKTDNG-------------GWAHVVCAL 90 (900)
T ss_pred eeeeehhccee--EecCCCchhhhhhhhhhhhccceeecccCcc-----cceecccCC-------------CceEEEEEe
Confidence 36899999999 33 23459999999 788899999999999 999998765 399999999
Q ss_pred ccCceeeeCCc---ccchHHHHHHhhcccccccCC--------CCceeecCccCCCcceeccccccc------Ccccccc
Q 003547 669 WAPNVYFEDDT---VINLEAELARSRRIKCCCCGL--------KGAALGCYEKTCRKSFHVPCAKLI------LQCRWDT 731 (811)
Q Consensus 669 WSPeV~f~~~~---l~dI~~~i~ra~~lkC~~Cgk--------~GAsI~C~~~~C~rsFHvpCA~~~------~gc~~d~ 731 (811)
|+|||.|.+.. .+-|+.++..+....||+|.+ .|||++|...+|++.|||+||+.. .|-+.|.
T Consensus 91 YIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dN 170 (900)
T KOG0956|consen 91 YIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDN 170 (900)
T ss_pred eccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccccccc
Confidence 99999999643 444567778888899999974 399999999999999999999972 2334667
Q ss_pred CceeecccCccCC
Q 003547 732 DNFVMLCPLHTSS 744 (811)
Q Consensus 732 ~~f~~fC~~H~p~ 744 (811)
.+|.-||..|-.+
T Consensus 171 VKYCGYCk~HfsK 183 (900)
T KOG0956|consen 171 VKYCGYCKYHFSK 183 (900)
T ss_pred ceechhHHHHHHH
Confidence 7899999999753
No 2
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.76 E-value=1.1e-19 Score=207.08 Aligned_cols=134 Identities=24% Similarity=0.429 Sum_probs=114.5
Q ss_pred ccccccchhhHHhhhhcCCcccCCcCCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcccCc
Q 003547 593 VRGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPN 672 (811)
Q Consensus 593 ~~v~~~~~~i~~~~~~~~~~lrpC~s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWSPe 672 (811)
++||..||||..... ..|.++.|. ....+.|+||+..| |+|+.+..|+ .|+|+.||||+||
T Consensus 296 ~cVHqaCyGIle~p~-gpWlCr~Ca-lg~~ppCvLCPkkG-----GamK~~~sgT------------~wAHvsCALwIPE 356 (893)
T KOG0954|consen 296 ICVHQACYGILEVPE-GPWLCRTCA-LGIEPPCVLCPKKG-----GAMKPTKSGT------------KWAHVSCALWIPE 356 (893)
T ss_pred hHHHHhhhceeecCC-CCeeehhcc-ccCCCCeeeccccC-----CcccccCCCC------------eeeEeeeeeccce
Confidence 499999999977765 679999998 44889999999999 9999887664 6999999999999
Q ss_pred eeeeC----CcccchHHHHHHhhcccccccCC-CCceeecCccCCCcceecccccccCccc------cccCceeecccCc
Q 003547 673 VYFED----DTVINLEAELARSRRIKCCCCGL-KGAALGCYEKTCRKSFHVPCAKLILQCR------WDTDNFVMLCPLH 741 (811)
Q Consensus 673 V~f~~----~~l~dI~~~i~ra~~lkC~~Cgk-~GAsI~C~~~~C~rsFHvpCA~~~~gc~------~d~~~f~~fC~~H 741 (811)
|++.. ..+..+..+...+|.|.|.+|.. .||||+|+.+.|+.+||+.||...+.-+ .+...|..||.+|
T Consensus 357 Vsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~kh 436 (893)
T KOG0954|consen 357 VSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKH 436 (893)
T ss_pred eeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeecccc
Confidence 99985 33667788888999999999985 5999999999999999999998844322 3466699999999
Q ss_pred cCCC
Q 003547 742 TSSN 745 (811)
Q Consensus 742 ~p~k 745 (811)
...+
T Consensus 437 s~~~ 440 (893)
T KOG0954|consen 437 SDHR 440 (893)
T ss_pred cccc
Confidence 8765
No 3
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.73 E-value=6.4e-19 Score=193.95 Aligned_cols=136 Identities=21% Similarity=0.354 Sum_probs=110.4
Q ss_pred cccccccchhhHHhhhhc-CCcccCCcCCCCCce-eeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcc
Q 003547 592 GVRGSSDIGVLEKLHKTQ-RGALRKCETLAHKIQ-CSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEW 669 (811)
Q Consensus 592 ~~~v~~~~~~i~~~~~~~-~~~lrpC~s~~~~~~-CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALW 669 (811)
++.||++|||| +-.-+ .|.+|+|--...... |.||+..+ |+|+++.+|+ |+|..||+|
T Consensus 217 ~i~VHq~CYGI--~f~peG~WlCrkCi~~~~~i~~C~fCps~d-----GaFkqT~dgr-------------W~H~iCA~~ 276 (669)
T COG5141 217 EICVHQSCYGI--QFLPEGFWLCRKCIYGEYQIRCCSFCPSSD-----GAFKQTSDGR-------------WGHVICAMF 276 (669)
T ss_pred chhhhhhcccc--eecCcchhhhhhhcccccceeEEEeccCCC-----CceeeccCCc-------------hHhHhHHHh
Confidence 46999999999 44344 699999995555555 99999999 9999998874 999999999
Q ss_pred cCceeeeCC----cccchHHHHHHhhcccccccCCC-CceeecCccCCCcceecccccccCccccc----------cCce
Q 003547 670 APNVYFEDD----TVINLEAELARSRRIKCCCCGLK-GAALGCYEKTCRKSFHVPCAKLILQCRWD----------TDNF 734 (811)
Q Consensus 670 SPeV~f~~~----~l~dI~~~i~ra~~lkC~~Cgk~-GAsI~C~~~~C~rsFHvpCA~~~~gc~~d----------~~~f 734 (811)
.|+++|.+. .+.+|..+...++++.|.+|+++ |+||+|++.+|.++|||+||++ +|...- .-+.
T Consensus 277 ~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArr-ag~f~~~~~s~n~~s~~id~ 355 (669)
T COG5141 277 NPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARR-AGYFDLNIYSHNGISYCIDH 355 (669)
T ss_pred cchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhh-cchhhhhhhcccccceeecc
Confidence 999999964 35677778899999999999976 8999999999999999999998 443311 1125
Q ss_pred eecccCccCCCCCC
Q 003547 735 VMLCPLHTSSNLPN 748 (811)
Q Consensus 735 ~~fC~~H~p~k~p~ 748 (811)
..||.+|.|..+-.
T Consensus 356 e~~c~kh~p~gy~~ 369 (669)
T COG5141 356 EPLCRKHYPLGYGR 369 (669)
T ss_pred hhhhcCCCCcchhc
Confidence 56799999865433
No 4
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.73 E-value=2.2e-18 Score=153.19 Aligned_cols=79 Identities=43% Similarity=1.048 Sum_probs=72.2
Q ss_pred hhhhhcccCceeeeCC------cccchHHHHHHhhcccccccCCC-CceeecCccCCCcceecccccccCccccccC---
Q 003547 663 HRNCTEWAPNVYFEDD------TVINLEAELARSRRIKCCCCGLK-GAALGCYEKTCRKSFHVPCAKLILQCRWDTD--- 732 (811)
Q Consensus 663 H~~CALWSPeV~f~~~------~l~dI~~~i~ra~~lkC~~Cgk~-GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~--- 732 (811)
|++||||+|||++.+. .+.+|..++.++++++|++|+++ ||+|+|...+|.++||++||+. .++.++..
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~-~~~~~~~~~~~ 79 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK-AGCFIEFDEDN 79 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc-CCeEEEEccCC
Confidence 8999999999999854 58899999999999999999999 9999999999999999999998 67775544
Q ss_pred -ceeecccCcc
Q 003547 733 -NFVMLCPLHT 742 (811)
Q Consensus 733 -~f~~fC~~H~ 742 (811)
.|.+||++|+
T Consensus 80 ~~~~~~C~~H~ 90 (90)
T PF13771_consen 80 GKFRIFCPKHS 90 (90)
T ss_pred CceEEEChhcC
Confidence 6999999996
No 5
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.69 E-value=7.6e-18 Score=155.34 Aligned_cols=99 Identities=26% Similarity=0.668 Sum_probs=82.3
Q ss_pred eeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcccCceeeeCCc---ccchHHHHHHhhcccccccCC
Q 003547 624 QCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDT---VINLEAELARSRRIKCCCCGL 700 (811)
Q Consensus 624 ~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWSPeV~f~~~~---l~dI~~~i~ra~~lkC~~Cgk 700 (811)
.|+||+..+ |+|+++.+| .|||++||+|.|+++|.+.. +.++.........++|.+|++
T Consensus 2 ~C~lC~~~~-----Galk~t~~~-------------~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~ 63 (110)
T PF13832_consen 2 SCVLCPKRG-----GALKRTSDG-------------QWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGK 63 (110)
T ss_pred ccEeCCCCC-----CcccCccCC-------------cEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCC
Confidence 699999998 999887543 59999999999999998533 345666666678999999998
Q ss_pred C-CceeecCccCCCcceecccccccCcccccc------CceeecccCc
Q 003547 701 K-GAALGCYEKTCRKSFHVPCAKLILQCRWDT------DNFVMLCPLH 741 (811)
Q Consensus 701 ~-GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~------~~f~~fC~~H 741 (811)
. |++|+|...+|.++||++||+. .|..+.. ..+.+||++|
T Consensus 64 ~~G~~i~C~~~~C~~~fH~~CA~~-~g~~~~~~~~~~~~~~~~~C~~H 110 (110)
T PF13832_consen 64 SGGACIKCSHPGCSTAFHPTCARK-AGLYFEIENEEDNVQFIAYCPKH 110 (110)
T ss_pred CCceeEEcCCCCCCcCCCHHHHHH-CCCeEEeeecCCCceEEEECCCC
Confidence 5 9999999999999999999988 5665432 2489999998
No 6
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.65 E-value=3.7e-17 Score=196.48 Aligned_cols=133 Identities=23% Similarity=0.479 Sum_probs=110.9
Q ss_pred cccccccchhhHHhhhhcCCcccCCc-CCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhccc
Q 003547 592 GVRGSSDIGVLEKLHKTQRGALRKCE-TLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWA 670 (811)
Q Consensus 592 ~~~v~~~~~~i~~~~~~~~~~lrpC~-s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWS 670 (811)
++.||.+||++. .--.-+|.+|+|- +......|+||+..+ |+|+++.+|+ |+|+.||+|.
T Consensus 243 nl~VHq~Cygi~-~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~-----gAFkqt~dgr-------------w~Hv~caiwi 303 (1051)
T KOG0955|consen 243 NLAVHQECYGIP-FIPEGQWLCRRCLQSPQRPVRCLLCPSKG-----GAFKQTDDGR-------------WAHVVCAIWI 303 (1051)
T ss_pred cchhhhhccCCC-CCCCCcEeehhhccCcCcccceEeccCCC-----CcceeccCCc-------------eeeeehhhcc
Confidence 569999999963 3345689999999 778888999999999 9999998874 9999999999
Q ss_pred CceeeeCC----cccchHHHHHHhhcccccccCCC--CceeecCccCCCcceecccccccCccccc------c-------
Q 003547 671 PNVYFEDD----TVINLEAELARSRRIKCCCCGLK--GAALGCYEKTCRKSFHVPCAKLILQCRWD------T------- 731 (811)
Q Consensus 671 PeV~f~~~----~l~dI~~~i~ra~~lkC~~Cgk~--GAsI~C~~~~C~rsFHvpCA~~~~gc~~d------~------- 731 (811)
|+|+|.+- .+.+|+.+...+|++.|++|+.+ ||||+|+..+|..+|||+||+++ |.++- .
T Consensus 304 pev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~a-gl~m~~~~~~~~s~~~~s~ 382 (1051)
T KOG0955|consen 304 PEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRA-GLYMKSNTVKELSKNGTSQ 382 (1051)
T ss_pred cccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhc-CceEeeccccccccccccc
Confidence 99999852 24566667767799999999965 79999999999999999999984 43322 1
Q ss_pred -CceeecccCccCC
Q 003547 732 -DNFVMLCPLHTSS 744 (811)
Q Consensus 732 -~~f~~fC~~H~p~ 744 (811)
....+||..|.|.
T Consensus 383 ~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 383 SVNKISYCDKHTPP 396 (1051)
T ss_pred ccceeeeccCCCCc
Confidence 2478899999997
No 7
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.51 E-value=2.1e-15 Score=166.82 Aligned_cols=132 Identities=22% Similarity=0.381 Sum_probs=103.6
Q ss_pred cccccccchhhH---------HhhhhcCCcccCCcCCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCccccee
Q 003547 592 GVRGSSDIGVLE---------KLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHS 662 (811)
Q Consensus 592 ~~~v~~~~~~i~---------~~~~~~~~~lrpC~s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWV 662 (811)
+|.||+.|||.. .-+....|.+-+|....+.+.|.||+..+ |.|+.+.-| .||
T Consensus 143 Gi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~-----GifKetDig-------------rWv 204 (707)
T KOG0957|consen 143 GINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRF-----GIFKETDIG-------------RWV 204 (707)
T ss_pred CceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcC-----Ccccccchh-------------hHH
Confidence 579999999874 11122669999999888889999999998 988876433 599
Q ss_pred hhhhhcccCceeeeC------CcccchHHHHHHhhcccccccC-----CCCceeecCccCCCcceecccccccCccccc-
Q 003547 663 HRNCTEWAPNVYFED------DTVINLEAELARSRRIKCCCCG-----LKGAALGCYEKTCRKSFHVPCAKLILQCRWD- 730 (811)
Q Consensus 663 H~~CALWSPeV~f~~------~~l~dI~~~i~ra~~lkC~~Cg-----k~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d- 730 (811)
|.+||||+|||-|.. .+|..++ ........|.+|. +.|.||+|..+.|+.+|||+||+. .|.+..
T Consensus 205 H~iCALYvpGVafg~~~~l~~Vtl~em~--ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk-~GlLvea 281 (707)
T KOG0957|consen 205 HAICALYVPGVAFGQTHTLCGVTLEEMD--YSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQK-LGLLVEA 281 (707)
T ss_pred HHHHHhhcCccccccccccccccHHHhh--hhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhh-hcceeec
Confidence 999999999999983 3344444 2334456899997 469999999999999999999998 565533
Q ss_pred ------cCceeecccCccCC
Q 003547 731 ------TDNFVMLCPLHTSS 744 (811)
Q Consensus 731 ------~~~f~~fC~~H~p~ 744 (811)
.+-|.+||..|...
T Consensus 282 ~~e~DiAdpfya~CK~Ht~r 301 (707)
T KOG0957|consen 282 TDENDIADPFYAFCKKHTNR 301 (707)
T ss_pred cccccchhhHHHHHHhhcch
Confidence 23399999999875
No 8
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.28 E-value=6.7e-12 Score=145.70 Aligned_cols=158 Identities=35% Similarity=0.512 Sum_probs=112.5
Q ss_pred CCcccccCCCCcccceehhhhhcccCceeeeCCcccchHHHHHHhhcccccccCCCCceeecCccCCCcceecccccccC
Q 003547 646 GKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLIL 725 (811)
Q Consensus 646 Gk~V~ad~~~~s~~iWVH~~CALWSPeV~f~~~~l~dI~~~i~ra~~lkC~~Cgk~GAsI~C~~~~C~rsFHvpCA~~~~ 725 (811)
|.+...|-.++.++..+|+.|.+|...|+.....+.. ..++.++....|..|+..||-.+|..++|...||++||+...
T Consensus 318 ~~~~s~Dk~~~~~~~~~~v~~~~d~~~v~d~cs~~~~-~~~l~r~~~~~~~~c~l~~~h~~~~~~s~~~~~~~~~a~~~~ 396 (684)
T KOG4362|consen 318 GLISSGDKTDNGNVRKPSVAVSDDDEQVLDECSTSGK-ECELGRSFPITCEDCKLKGAHLGCLEKSCGSSEHVKCARGIK 396 (684)
T ss_pred cccCCCccCCCccccccccccccchHHHHHhcccccc-ccccccCCcceeeeccccchhhhhhhcccccceeeeeccccc
Confidence 3333334344455678999999999998876444322 256678888999999999999999999999999999999877
Q ss_pred ccccc---------------cCc---eeecccCccCCCCCCCCCCCccccccccccc-ccccccccCccccccccccccc
Q 003547 726 QCRWD---------------TDN---FVMLCPLHTSSNLPNENPGSQESRKKCISKK-LLTQHNKVAFKSDISTNSWQSW 786 (811)
Q Consensus 726 gc~~d---------------~~~---f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~-e~~~p~~~~~s~~i~~~c~~aw 786 (811)
.|.|+ ... |.+.|+.|...+.|.+..+...+...-...- ...+|.++....+ ..-..++.
T Consensus 397 ~~~~~~~t~~i~~~~~~~~r~~~~~~f~~~cp~~ss~kep~~K~~~~a~~~~~~p~~~~~~qp~q~~~~~n-~~~s~~~~ 475 (684)
T KOG4362|consen 397 SCRNDGTTSKISNSSEGEARSEHEPCFIVLCPMESSTKEPEEKPGGYAGSVKPRPKRHDVLQPAQDGSKDN-ETKSTHRF 475 (684)
T ss_pred cccCccchhccccCCcccccccccchhhccccccccccccccccccccccccccccccccCCcccchhHhh-hhhcccCc
Confidence 77776 222 8888999999988888776533322222222 2455665554433 11155666
Q ss_pred chhhhhccccccccceeee
Q 003547 787 ENKLVLCCSALTVGEQVYC 805 (811)
Q Consensus 787 fHR~Ciq~~ALsaG~k~~~ 805 (811)
-.+..+.+++|+-.+|.++
T Consensus 476 ~kk~~~~~s~l~p~ek~~v 494 (684)
T KOG4362|consen 476 KKKLVLLVSGLTPSEKQLV 494 (684)
T ss_pred ccceeeeeccCCcchHHHH
Confidence 7889999999999988776
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.00 E-value=3.2e-10 Score=94.20 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=57.1
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSV 75 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~ 75 (811)
++.||||++++.+||.++|||+||+.||..|+.....||.|+..+...++.++..+++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 47899999999999999999999999999999888899999999988889999998888764
No 10
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=4e-10 Score=125.63 Aligned_cols=76 Identities=24% Similarity=0.666 Sum_probs=69.3
Q ss_pred hhhhhccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 6 s~le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~e~ 81 (811)
..+..++..+.|+||+++|.+||+++|||+||..||..|+.....||+|+..+....+..|..|.+||+.|+.+.+
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 4567889999999999999999999999999999999999887789999999887789999999999999986554
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=4.3e-10 Score=88.38 Aligned_cols=38 Identities=47% Similarity=1.166 Sum_probs=31.0
Q ss_pred CcccccccccceeccCCChhhHHhHHHHhcCC----CCCCCC
Q 003547 17 CPICLSLLSSAVSLTCNHVFCNACIVKSMKSG----SNCPVC 54 (811)
Q Consensus 17 CpIClelL~dPVtLpCGHtFC~~CL~~~l~~~----~~CP~C 54 (811)
||||+++|.+||+|+|||+||..||.++|... +.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999863 579987
No 12
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.92 E-value=4.4e-10 Score=120.87 Aligned_cols=75 Identities=25% Similarity=0.607 Sum_probs=68.9
Q ss_pred hhhhccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 003547 7 HLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 7 ~le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~e~ 81 (811)
.+..++..|+|.||.++|.-|+.+||+|+||..||..++..+..||.|+..++...++.|..|.+||..|.....
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHHH
Confidence 366778999999999999999999999999999999999999999999999999999999999999988875543
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.83 E-value=2.8e-09 Score=92.65 Aligned_cols=68 Identities=18% Similarity=0.373 Sum_probs=57.6
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcC-CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhh
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKS-GSNCPVCKVPYHRREIRAAPHMDNLVSVYKSM 79 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~-~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~ 79 (811)
.+.|.|||++++|.+||.+++||+|++.||..|+.. ...||.|+.++...++.+|..|++.|+.+...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998 78999999999988999999999999998754
No 14
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.4e-09 Score=105.57 Aligned_cols=105 Identities=28% Similarity=0.532 Sum_probs=75.9
Q ss_pred hhhhhccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhccccCC
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVASGI 85 (811)
Q Consensus 6 s~le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~e~~~g~ 85 (811)
.....+.+.+.|+||+++|.+|+.++|+|+||..||..++.....||.||. .. ..+.+|..+.+++..+.........
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~~~~~ 82 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRLSRPL 82 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCCcccc
Confidence 556778899999999999999999999999999999999985579999996 32 2777999999999999866543222
Q ss_pred c---eeeecCCCCCCcccccccccccccccc
Q 003547 86 N---IFVTQDESSTKSSGDLICGEQVTGGCQ 113 (811)
Q Consensus 86 ~---v~Ct~~~~~~a~~~~~qCgE~~~~~C~ 113 (811)
. .+|..+...... -|..|+..+|..|.
T Consensus 83 ~~~~~~c~~~~~~~~~-~c~~~~~~~c~~c~ 112 (386)
T KOG2177|consen 83 GSKEELCEKHGEELKL-FCEEDEKLLCVLCR 112 (386)
T ss_pred cccchhhhhcCCcceE-EecccccccCCCCC
Confidence 1 134333332111 13334455566665
No 15
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.77 E-value=2.4e-09 Score=91.24 Aligned_cols=63 Identities=35% Similarity=0.935 Sum_probs=37.9
Q ss_pred hhccccccCcccccccccceec-cCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003547 9 EKMGRELKCPICLSLLSSAVSL-TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLV 73 (811)
Q Consensus 9 e~L~eeLtCpIClelL~dPVtL-pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLV 73 (811)
+.+++.|.|++|.++|++||.+ .|.|.||+.|+...+. ..||+|+.+....+++.|..|.+|+
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhccC
Confidence 5678889999999999999976 7999999999987665 3599999999999999999998875
No 16
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-08 Score=107.14 Aligned_cols=73 Identities=25% Similarity=0.552 Sum_probs=65.3
Q ss_pred hhhccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhc
Q 003547 8 LEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSME 80 (811)
Q Consensus 8 le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~e 80 (811)
+..|+..|.|.||..+|.-|+.++|||+||..||.+++..+..||+||......-++.+..++.+++.+....
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 5567888999999999999999999999999999999999999999999988777888888888888876543
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.62 E-value=2e-08 Score=102.36 Aligned_cols=55 Identities=33% Similarity=0.740 Sum_probs=46.2
Q ss_pred hccccccCcccccccccceeccCCChhhHHhHHHHhcC----------------CCCCCCCCCCCCCCCCC
Q 003547 10 KMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKS----------------GSNCPVCKVPYHRREIR 64 (811)
Q Consensus 10 ~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~----------------~~~CP~CR~~~~~~~L~ 64 (811)
++..++.|+||++.+.+|+.++|||.||+.||..|+.. ...||+||..+....+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 34678999999999999999999999999999998742 25899999988755443
No 18
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.49 E-value=5.2e-08 Score=74.86 Aligned_cols=38 Identities=47% Similarity=1.164 Sum_probs=33.6
Q ss_pred Ccccccccccc-eeccCCChhhHHhHHHHhcCCCCCCCC
Q 003547 17 CPICLSLLSSA-VSLTCNHVFCNACIVKSMKSGSNCPVC 54 (811)
Q Consensus 17 CpIClelL~dP-VtLpCGHtFC~~CL~~~l~~~~~CP~C 54 (811)
|+||++.+.+| +.++|||+||..|+.+++.....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999999988899987
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=1.7e-07 Score=75.65 Aligned_cols=47 Identities=34% Similarity=0.957 Sum_probs=41.3
Q ss_pred ccccCcccccccccceeccCCCh-hhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLSSAVSLTCNHV-FCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 13 eeLtCpIClelL~dPVtLpCGHt-FC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
++..|.||++...+++.+||||. ||..|+.+++.....||.||.++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46789999999999999999999 999999999998889999998764
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.30 E-value=3e-07 Score=70.78 Aligned_cols=38 Identities=42% Similarity=1.134 Sum_probs=35.0
Q ss_pred Ccccccccccce-eccCCChhhHHhHHHHhc--CCCCCCCC
Q 003547 17 CPICLSLLSSAV-SLTCNHVFCNACIVKSMK--SGSNCPVC 54 (811)
Q Consensus 17 CpIClelL~dPV-tLpCGHtFC~~CL~~~l~--~~~~CP~C 54 (811)
|+||++.+.+|+ .++|||.||..||.+++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 35689987
No 21
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.27 E-value=2.2e-07 Score=72.99 Aligned_cols=40 Identities=45% Similarity=1.099 Sum_probs=34.9
Q ss_pred cCcccccccc---cceeccCCChhhHHhHHHHhcCCCCCCCCC
Q 003547 16 KCPICLSLLS---SAVSLTCNHVFCNACIVKSMKSGSNCPVCK 55 (811)
Q Consensus 16 tCpIClelL~---dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR 55 (811)
.|+||++.|. .++.++|+|.||..||..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 556789999999999999999888999996
No 22
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.9e-07 Score=96.48 Aligned_cols=51 Identities=27% Similarity=0.774 Sum_probs=46.4
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRRE 62 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~ 62 (811)
+....|.||++...+|..+||||.||+.||..|......||+||..++...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 345799999999999999999999999999999999999999999887554
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.25 E-value=6e-07 Score=94.61 Aligned_cols=48 Identities=35% Similarity=0.899 Sum_probs=41.2
Q ss_pred cccccCcccccccccc--------eeccCCChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSA--------VSLTCNHVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~dP--------VtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
..+..|+||++.+.++ +.++|+|.||..||..|+.....||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4568999999987653 45689999999999999998889999998764
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.6e-07 Score=93.59 Aligned_cols=52 Identities=33% Similarity=0.809 Sum_probs=45.0
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcCC---CCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG---SNCPVCKVPYHRREI 63 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~---~~CP~CR~~~~~~~L 63 (811)
...+.|.||++.-++||.+.|||.||+-||-.|+... ..||+|+..+....+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 4578999999999999999999999999999999863 479999987765443
No 25
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=98.18 E-value=6.5e-07 Score=99.95 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=73.9
Q ss_pred cceehhhhhcccCceeeeCC-cccchHHHHHHhhcccccccCCCCceeecCccCCCcceecccccccCccccccCceeec
Q 003547 659 IIHSHRNCTEWAPNVYFEDD-TVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVML 737 (811)
Q Consensus 659 ~iWVH~~CALWSPeV~f~~~-~l~dI~~~i~ra~~lkC~~Cgk~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~~f~~f 737 (811)
..|.|++|++|+|.+.+.++ .+.++..++.+.+.+.|..|.++||++.|...+|...+|++|+.. .-+++......++
T Consensus 238 ~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~r~~~~~c~~c~k~ga~~~c~~~~~~~~~h~~c~~~-~~~~~~~~~r~v~ 316 (375)
T KOG1084|consen 238 ELWYHRYCALWAPNVHESQGGQLTNVDNAVIRFPSLQCILCQKPGATLKCVQASLLSNAHFPCARA-KNGIPLDYDRKVS 316 (375)
T ss_pred hHHHHHHHHhcCCcceeccCccccCchhhhhcccchhcccccCCCCchhhhhhhhhcccCcccccC-cccccchhhhhcc
Confidence 47999999999999999855 899999999999999999999999999999999999999999987 4444433345899
Q ss_pred ccCcc
Q 003547 738 CPLHT 742 (811)
Q Consensus 738 C~~H~ 742 (811)
|+.|+
T Consensus 317 ~~~h~ 321 (375)
T KOG1084|consen 317 CPRHR 321 (375)
T ss_pred CCCCC
Confidence 99999
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.16 E-value=1.6e-06 Score=65.80 Aligned_cols=42 Identities=50% Similarity=1.185 Sum_probs=37.2
Q ss_pred cCcccccccccceecc-CCChhhHHhHHHHhcC-CCCCCCCCCC
Q 003547 16 KCPICLSLLSSAVSLT-CNHVFCNACIVKSMKS-GSNCPVCKVP 57 (811)
Q Consensus 16 tCpIClelL~dPVtLp-CGHtFC~~CL~~~l~~-~~~CP~CR~~ 57 (811)
.|+||++.+.+++.++ |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 9999999999999987 6789999875
No 27
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-06 Score=88.31 Aligned_cols=52 Identities=38% Similarity=0.935 Sum_probs=43.9
Q ss_pred cccccCcccccccccc--eeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSA--VSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREI 63 (811)
Q Consensus 12 ~eeLtCpIClelL~dP--VtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L 63 (811)
...+.||||++.+.+- |.+.|||.||..||...+.....||+|++-+....|
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 3458999999988754 567899999999999999999999999987765544
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.09 E-value=1.3e-06 Score=69.37 Aligned_cols=35 Identities=46% Similarity=1.100 Sum_probs=22.7
Q ss_pred Cccccccccc----ceeccCCChhhHHhHHHHhcC----CCCCC
Q 003547 17 CPICLSLLSS----AVSLTCNHVFCNACIVKSMKS----GSNCP 52 (811)
Q Consensus 17 CpIClelL~d----PVtLpCGHtFC~~CL~~~l~~----~~~CP 52 (811)
||||.+ |.+ |+.|+|||+||..||.+++.. .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 999999999999999999874 34676
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.01 E-value=4.9e-06 Score=60.89 Aligned_cols=38 Identities=50% Similarity=1.231 Sum_probs=34.4
Q ss_pred CcccccccccceeccCCChhhHHhHHHHhc-CCCCCCCC
Q 003547 17 CPICLSLLSSAVSLTCNHVFCNACIVKSMK-SGSNCPVC 54 (811)
Q Consensus 17 CpIClelL~dPVtLpCGHtFC~~CL~~~l~-~~~~CP~C 54 (811)
|+||++....++.++|+|.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999988 45679987
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.01 E-value=4.7e-06 Score=65.80 Aligned_cols=41 Identities=29% Similarity=0.886 Sum_probs=35.2
Q ss_pred cCccccccc---ccceeccCCChhhHHhHHHHhcCCCCCCCCCC
Q 003547 16 KCPICLSLL---SSAVSLTCNHVFCNACIVKSMKSGSNCPVCKV 56 (811)
Q Consensus 16 tCpIClelL---~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~ 56 (811)
.|+||.+.+ ..|+.++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 45778899999999999998855679999984
No 31
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.98 E-value=3.6e-06 Score=91.44 Aligned_cols=72 Identities=28% Similarity=0.718 Sum_probs=61.9
Q ss_pred hhhhhccccccCcccccccccceec-cCCChhhHHhHHHHhcCCCCCCCCCCCCCCC----CCCCcHHHHHHHHHHH
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSL-TCNHVFCNACIVKSMKSGSNCPVCKVPYHRR----EIRAAPHMDNLVSVYK 77 (811)
Q Consensus 6 s~le~L~eeLtCpIClelL~dPVtL-pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~----~L~~n~~L~nLVd~lk 77 (811)
..+.++...++|.+|..+|.+|.++ -|.|+||..||.+++.....||.|...+... .++.+..|+.||..+.
T Consensus 7 vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLV 83 (331)
T KOG2660|consen 7 VKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLV 83 (331)
T ss_pred hhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHc
Confidence 4566778899999999999999987 5999999999999999988999999776533 5778888888887764
No 32
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2e-06 Score=93.99 Aligned_cols=70 Identities=37% Similarity=0.819 Sum_probs=58.6
Q ss_pred hhhccccccCcccccccccceecc-CCChhhHHhHHHHhcC-CCCCCCCCCCCC-CCCCCCcHHHHHHHHHHH
Q 003547 8 LEKMGRELKCPICLSLLSSAVSLT-CNHVFCNACIVKSMKS-GSNCPVCKVPYH-RREIRAAPHMDNLVSVYK 77 (811)
Q Consensus 8 le~L~eeLtCpIClelL~dPVtLp-CGHtFC~~CL~~~l~~-~~~CP~CR~~~~-~~~L~~n~~L~nLVd~lk 77 (811)
+..+.-++.|+||+.+|+..++++ |+|.||..||...+.. +..||.||+.+. .+.|+.++.+..|+..+.
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 456788999999999999999875 9999999999988876 469999998874 568888877777776654
No 33
>PHA02926 zinc finger-like protein; Provisional
Probab=97.86 E-value=9.2e-06 Score=84.45 Aligned_cols=49 Identities=33% Similarity=0.888 Sum_probs=39.5
Q ss_pred ccccccCccccccccc---------ceeccCCChhhHHhHHHHhcCC------CCCCCCCCCCC
Q 003547 11 MGRELKCPICLSLLSS---------AVSLTCNHVFCNACIVKSMKSG------SNCPVCKVPYH 59 (811)
Q Consensus 11 L~eeLtCpIClelL~d---------PVtLpCGHtFC~~CL~~~l~~~------~~CP~CR~~~~ 59 (811)
..++..|+||++...+ ++..+|+|+||..||..|.... ..||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568999999987643 3455899999999999998742 36999999865
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.3e-06 Score=93.74 Aligned_cols=53 Identities=30% Similarity=0.881 Sum_probs=46.5
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCC-----CCCCCCCCCCCCCCCCCc
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-----SNCPVCKVPYHRREIRAA 66 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~-----~~CP~CR~~~~~~~L~~n 66 (811)
+..||||++...-|+.+.|||.||..||..+|... ..||+|+..+..+++.+-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 78999999999999999999999999999999763 489999999887665443
No 35
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.2e-05 Score=82.11 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=41.8
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHH-HhcCCC-CCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVK-SMKSGS-NCPVCKVPYHR 60 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~-~l~~~~-~CP~CR~~~~~ 60 (811)
..+..|+||++....|..++|||.||..||.. |-.... .||+||+-...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 45788999999999999999999999999998 544455 69999987653
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.44 E-value=8.3e-05 Score=65.08 Aligned_cols=40 Identities=33% Similarity=0.876 Sum_probs=32.9
Q ss_pred cCccccccccc------------cee-ccCCChhhHHhHHHHhcCCCCCCCCC
Q 003547 16 KCPICLSLLSS------------AVS-LTCNHVFCNACIVKSMKSGSNCPVCK 55 (811)
Q Consensus 16 tCpIClelL~d------------PVt-LpCGHtFC~~CL~~~l~~~~~CP~CR 55 (811)
.|.||++.|.+ ++. .+|||.|...||.+|+.....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999999933 333 37999999999999999988999997
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.00019 Score=78.36 Aligned_cols=62 Identities=23% Similarity=0.698 Sum_probs=44.3
Q ss_pred cccCccccc-ccccce---ec-cCCChhhHHhHHHHhcCC-CCCCCCCCCCCCCCC----CCcHHHHHHHHH
Q 003547 14 ELKCPICLS-LLSSAV---SL-TCNHVFCNACIVKSMKSG-SNCPVCKVPYHRREI----RAAPHMDNLVSV 75 (811)
Q Consensus 14 eLtCpICle-lL~dPV---tL-pCGHtFC~~CL~~~l~~~-~~CP~CR~~~~~~~L----~~n~~L~nLVd~ 75 (811)
+..||+|.. .+.+|- .+ +|||.||..|+..+|..+ ..||.|+.++....+ ..+..+..-++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i 74 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence 468999997 244443 22 699999999999988654 589999999887653 345555444433
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=5.5e-05 Score=89.64 Aligned_cols=58 Identities=28% Similarity=0.750 Sum_probs=51.0
Q ss_pred hhhccccccCcccccccccceeccCCChhhHHhHHHHhcCC-CCCCCCCCCCCCCCCCC
Q 003547 8 LEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHRREIRA 65 (811)
Q Consensus 8 le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~-~~CP~CR~~~~~~~L~~ 65 (811)
+..+..-|+||+|..-.++.|.+.|+|.||..|+...+..+ ..||.|...|...++.+
T Consensus 637 lk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 637 LKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 45667889999999999999999999999999999988874 69999999998776654
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00011 Score=82.76 Aligned_cols=51 Identities=27% Similarity=0.763 Sum_probs=46.4
Q ss_pred hccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCC
Q 003547 10 KMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60 (811)
Q Consensus 10 ~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~ 60 (811)
.+..++.|.||..+|..||++||||+||..||.+.+.....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346789999999999999999999999999999988878899999998864
No 40
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.22 E-value=0.00017 Score=80.69 Aligned_cols=102 Identities=23% Similarity=0.467 Sum_probs=74.0
Q ss_pred ccccccCcccccccccceeccCCChhhHHhHHHHhcC-------------------------------------------
Q 003547 11 MGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKS------------------------------------------- 47 (811)
Q Consensus 11 L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~------------------------------------------- 47 (811)
++++|.|+||...|.+|+.|+|+|+.|+.|....+.+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~ 80 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG 80 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence 4678999999999999999999999999997521100
Q ss_pred -----------------------------------------CCCCCCCCCCCCC-----CCCCCcHHHHHHHHHHHhhcc
Q 003547 48 -----------------------------------------GSNCPVCKVPYHR-----REIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 48 -----------------------------------------~~~CP~CR~~~~~-----~~L~~n~~L~nLVd~lk~~e~ 81 (811)
...||.|...+-. +.+..|..|++.+++|....+
T Consensus 81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~ 160 (699)
T KOG4367|consen 81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA 160 (699)
T ss_pred eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence 0258889876432 356789999999999976655
Q ss_pred ccCCceeeecCCCCC--Ccccccccccccccccccc
Q 003547 82 ASGINIFVTQDESST--KSSGDLICGEQVTGGCQDK 115 (811)
Q Consensus 82 ~~g~~v~Ct~~~~~~--a~~~~~qCgE~~~~~C~~~ 115 (811)
+. ..|+.|+..+ +-.-|.||+-+-|+-|+..
T Consensus 161 aa---~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~ 193 (699)
T KOG4367|consen 161 AA---LKCQLCEKAPKEATVMCEQCDVFYCDPCRLR 193 (699)
T ss_pred Hh---hhhhhhcCChhhhhhhHhhCceEEechHHhc
Confidence 44 4566654444 2223677888888888764
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.91 E-value=0.00062 Score=76.81 Aligned_cols=69 Identities=29% Similarity=0.703 Sum_probs=54.1
Q ss_pred hhccccccCccccccccccee-ccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCC-CCcHHHHHHHHHHH
Q 003547 9 EKMGRELKCPICLSLLSSAVS-LTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREI-RAAPHMDNLVSVYK 77 (811)
Q Consensus 9 e~L~eeLtCpIClelL~dPVt-LpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L-~~n~~L~nLVd~lk 77 (811)
..+++++.|++|..++.+|+. +.|||.||..|+..|......||.|+........ .........+..+.
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 346889999999999999999 4999999999999999988899999887754433 32334444444443
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00064 Score=73.56 Aligned_cols=48 Identities=35% Similarity=0.783 Sum_probs=41.9
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCC-CCCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHRR 61 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~-~~CP~CR~~~~~~ 61 (811)
.-.|+||+....-||.|+|+|.||.-||....... ..|++||.++...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 45699999999999999999999999998776654 5799999998754
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.91 E-value=0.00051 Score=70.53 Aligned_cols=60 Identities=23% Similarity=0.620 Sum_probs=47.6
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVS 74 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd 74 (811)
.+.|.||...|..||.+.|||+||..|..+-+..+..|-+|.+...- .+....-+..|+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G-~f~V~~d~~kmL~ 255 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG-RFWVVSDLQKMLN 255 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc-ceeHHhhHHHHHh
Confidence 47899999999999999999999999999988888999999876542 2333333444443
No 44
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.88 E-value=0.00097 Score=71.95 Aligned_cols=64 Identities=27% Similarity=0.573 Sum_probs=51.8
Q ss_pred ccCcccccccccceec-cCCChhhHHhHHHHhcC-CCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHh
Q 003547 15 LKCPICLSLLSSAVSL-TCNHVFCNACIVKSMKS-GSNCPVCKV-PYHRREIRAAPHMDNLVSVYKS 78 (811)
Q Consensus 15 LtCpIClelL~dPVtL-pCGHtFC~~CL~~~l~~-~~~CP~CR~-~~~~~~L~~n~~L~nLVd~lk~ 78 (811)
|.||+|..++.+|+.+ .|+|+||..||...+.. .+.||.|.. .+-+..|.+++....-|+.+..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 9999999999999988 59999999999977654 689999965 3455677788777666666543
No 45
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00039 Score=81.34 Aligned_cols=47 Identities=30% Similarity=0.712 Sum_probs=43.0
Q ss_pred cccccCccccccccc-----ceeccCCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSS-----AVSLTCNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 12 ~eeLtCpIClelL~d-----PVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
.....|+||.+.+.. |..++|+|.|+..||..|+.....||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 447899999999998 88999999999999999999999999999843
No 46
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.39 E-value=0.0016 Score=54.93 Aligned_cols=42 Identities=33% Similarity=0.703 Sum_probs=30.1
Q ss_pred cccccCccccccccccee-ccCCChhhHHhHHHHhcC--CCCCCC
Q 003547 12 GRELKCPICLSLLSSAVS-LTCNHVFCNACIVKSMKS--GSNCPV 53 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVt-LpCGHtFC~~CL~~~l~~--~~~CP~ 53 (811)
...+.|||.+.+|.+||. ..|+|+|.+..|..++.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999999999997 489999999999999943 358998
No 47
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0015 Score=70.63 Aligned_cols=45 Identities=36% Similarity=0.851 Sum_probs=40.9
Q ss_pred ccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 15 LKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 15 LtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
+.|-||..+|.+||.+.|+|+||..|....+.....|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 459999999999999999999999999888887789999988764
No 48
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0026 Score=70.52 Aligned_cols=47 Identities=23% Similarity=0.748 Sum_probs=40.8
Q ss_pred cccccCcccccc-ccc------------ceeccCCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSL-LSS------------AVSLTCNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 12 ~eeLtCpIClel-L~d------------PVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
..+-+|.||++- +.. |..|||||.|-..|+..|++.+-+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 457799999986 443 37899999999999999999999999999985
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0048 Score=66.27 Aligned_cols=48 Identities=25% Similarity=0.664 Sum_probs=41.1
Q ss_pred cccccCcccccccccceecc-CCChhhHHhHHHHhcC--CCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLT-CNHVFCNACIVKSMKS--GSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLp-CGHtFC~~CL~~~l~~--~~~CP~CR~~~~ 59 (811)
....+||+|.+....|.+.. |+|.||..|+...... .+.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45789999999999998874 9999999999877664 489999988764
No 50
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0039 Score=69.35 Aligned_cols=45 Identities=33% Similarity=0.653 Sum_probs=38.1
Q ss_pred ccCcccccccccc---eeccCCChhhHHhHHHHhcCC-CCCCCCCCCCC
Q 003547 15 LKCPICLSLLSSA---VSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYH 59 (811)
Q Consensus 15 LtCpIClelL~dP---VtLpCGHtFC~~CL~~~l~~~-~~CP~CR~~~~ 59 (811)
.+|.||++.|..= +.|||.|.|-..||..|+.+. ..||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999988733 358999999999999999885 57999988654
No 51
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.005 Score=66.88 Aligned_cols=47 Identities=30% Similarity=0.750 Sum_probs=39.5
Q ss_pred ccccCcccccccc---cceeccCCChhhHHhHHHHhcC-CCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLS---SAVSLTCNHVFCNACIVKSMKS-GSNCPVCKVPYH 59 (811)
Q Consensus 13 eeLtCpIClelL~---dPVtLpCGHtFC~~CL~~~l~~-~~~CP~CR~~~~ 59 (811)
-...|.||+.-|. .-+.|||.|.|-..|+.+|+.. ...||+||++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4578999998775 3356899999999999999985 569999999875
No 52
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.60 E-value=0.012 Score=53.52 Aligned_cols=47 Identities=28% Similarity=0.755 Sum_probs=35.7
Q ss_pred ccccCcccccccc-----------c-ceec-cCCChhhHHhHHHHhcC---CCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLS-----------S-AVSL-TCNHVFCNACIVKSMKS---GSNCPVCKVPYH 59 (811)
Q Consensus 13 eeLtCpIClelL~-----------d-PVtL-pCGHtFC~~CL~~~l~~---~~~CP~CR~~~~ 59 (811)
.+-.|.||...|. + |+.+ .|+|.|-..||.+|+.+ ...||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3556666666554 2 5444 69999999999999986 359999998764
No 53
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.42 E-value=0.007 Score=69.62 Aligned_cols=49 Identities=29% Similarity=0.756 Sum_probs=42.6
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcC-----CCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKS-----GSNCPVCKVPYHR 60 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~-----~~~CP~CR~~~~~ 60 (811)
..+..|.+|.+.-.+++...|.|.||+.||.+++.. ..+||+|...+..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 467899999999999999999999999999888764 3599999877653
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.014 Score=49.18 Aligned_cols=45 Identities=33% Similarity=0.828 Sum_probs=38.7
Q ss_pred ccCcccccccccceeccCCCh-hhHHhHHHHhcC-CCCCCCCCCCCC
Q 003547 15 LKCPICLSLLSSAVSLTCNHV-FCNACIVKSMKS-GSNCPVCKVPYH 59 (811)
Q Consensus 15 LtCpIClelL~dPVtLpCGHt-FC~~CL~~~l~~-~~~CP~CR~~~~ 59 (811)
-.|.||.+-..+.|...|||- .|..|-.+.|.. +..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999998888888899995 799999998884 569999998764
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.00 E-value=0.023 Score=64.57 Aligned_cols=47 Identities=34% Similarity=0.821 Sum_probs=39.0
Q ss_pred hccccccCcccccccccce----eccCCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 10 KMGRELKCPICLSLLSSAV----SLTCNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 10 ~L~eeLtCpIClelL~dPV----tLpCGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
.+-+.-+||||++.+.+-+ ++.|.|+|-..|+..|+. ..||+||-..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 3456779999999998776 458999999999999986 5799998643
No 56
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.034 Score=61.87 Aligned_cols=48 Identities=33% Similarity=0.798 Sum_probs=41.9
Q ss_pred cccccCcccccccccceeccCCCh-hhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHV-FCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHt-FC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
+....|-||+.-.++-+.|||.|. .|..|...+.-+...||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 346789999999999999999997 799999877766778999999875
No 57
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.035 Score=62.05 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=39.1
Q ss_pred cccccCcccccccccce-----e---ccCCChhhHHhHHHHhc--C-----CCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAV-----S---LTCNHVFCNACIVKSMK--S-----GSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~dPV-----t---LpCGHtFC~~CL~~~l~--~-----~~~CP~CR~~~~ 59 (811)
..+..|.||++...+.+ . .+|.|.||..||..|.. + ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34789999999888776 3 46999999999999873 3 368999998754
No 58
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.067 Score=61.53 Aligned_cols=48 Identities=29% Similarity=0.791 Sum_probs=38.4
Q ss_pred cccccCcccccccc-----------------cceeccCCChhhHHhHHHHhcC-CCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLS-----------------SAVSLTCNHVFCNACIVKSMKS-GSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~-----------------dPVtLpCGHtFC~~CL~~~l~~-~~~CP~CR~~~~ 59 (811)
+...-|+||+.... +-+.+||.|.|-..||..|+.. +..||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45667999997542 2345599999999999999996 459999999875
No 59
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=92.61 E-value=0.24 Score=59.13 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=75.6
Q ss_pred ccceehhhhhcccCceeee-CCcccch-HHHHHHhhcccccccCCC-CceeecCccCCCcceecccccccCccccccCce
Q 003547 658 KIIHSHRNCTEWAPNVYFE-DDTVINL-EAELARSRRIKCCCCGLK-GAALGCYEKTCRKSFHVPCAKLILQCRWDTDNF 734 (811)
Q Consensus 658 ~~iWVH~~CALWSPeV~f~-~~~l~dI-~~~i~ra~~lkC~~Cgk~-GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~~f 734 (811)
..+-||..|- ++.+. .+.|+-- -+--.|+.+.+|-+|-.+ ||--.=.. .-+-||-||..+.++.|....
T Consensus 30 CsVAVHQaCY----GIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn---~GWAHVVCALYIPEVrFgNV~- 101 (900)
T KOG0956|consen 30 CSVAVHQACY----GIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDN---GGWAHVVCALYIPEVRFGNVH- 101 (900)
T ss_pred ceeeeehhcc----eeEecCCCchhhhhhhhhhhhccceeecccCcccceecccC---CCceEEEEEeeccceeecccc-
Confidence 4588999994 33333 2222211 122345566889999755 66443333 458899999987776554321
Q ss_pred eecccCccCCCCCCCCCCCcccccccccccccccccccCcccccccc----cccccchhhhhccccccccce-eeecccc
Q 003547 735 VMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAFKSDISTN----SWQSWENKLVLCCSALTVGEQ-VYCTDTI 809 (811)
Q Consensus 735 ~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~e~~~p~~~~~s~~i~~~----c~~awfHR~Ciq~~ALsaG~k-~~~~~~~ 809 (811)
...--.-..+|.++ =.++|.||.|--.|+.-. +---|.| |+++ ||=.|-|...|=-.|- -++-|.-
T Consensus 102 --TMEPIiLq~VP~dR-----fnKtCYIC~E~GrpnkA~-~GACMtCNKs~Ckqa-FHVTCAQ~~GLLCEE~gn~~dNVK 172 (900)
T KOG0956|consen 102 --TMEPIILQDVPHDR-----FNKTCYICNEEGRPNKAA-KGACMTCNKSGCKQA-FHVTCAQRAGLLCEEEGNISDNVK 172 (900)
T ss_pred --cccceeeccCchhh-----hcceeeeecccCCccccc-cccceecccccchhh-hhhhHhhhhccceeccccccccce
Confidence 11111111223221 279999999844444211 1123344 4443 9999999988866555 3334444
Q ss_pred cC
Q 003547 810 FC 811 (811)
Q Consensus 810 ~~ 811 (811)
+|
T Consensus 173 YC 174 (900)
T KOG0956|consen 173 YC 174 (900)
T ss_pred ec
Confidence 44
No 60
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=0.098 Score=55.84 Aligned_cols=51 Identities=24% Similarity=0.504 Sum_probs=44.9
Q ss_pred ccccCcccccccccceec----cCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLSSAVSL----TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREI 63 (811)
Q Consensus 13 eeLtCpIClelL~dPVtL----pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L 63 (811)
..+.||+|.+.|.+.+.. +|||.||..|+++++.....||+|..++..+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 578999999999987632 899999999999999988999999999887654
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.97 E-value=0.025 Score=67.66 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=38.9
Q ss_pred cccCccccccccccee---ccCCChhhHHhHHHHhcCCCCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVS---LTCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60 (811)
Q Consensus 14 eLtCpIClelL~dPVt---LpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~ 60 (811)
.-.||+|+.-+.+-.. .+|+|.||..||..|-....+||+||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4579999987776643 3799999999999998888899999988753
No 62
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.23 Score=53.61 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=47.9
Q ss_pred cccCcccccccc------cceeccCCChhhHHhHHHHhcCC-CCCCCCCCCCCC--C---CCCCcHHHHHHHHHH
Q 003547 14 ELKCPICLSLLS------SAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHR--R---EIRAAPHMDNLVSVY 76 (811)
Q Consensus 14 eLtCpIClelL~------dPVtLpCGHtFC~~CL~~~l~~~-~~CP~CR~~~~~--~---~L~~n~~L~nLVd~l 76 (811)
.+.|-||.+.|. .|..|.|||+||..|+...+... ..||.||.+... . .+..|+.+-.++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 367889988764 67788999999999999888764 588999998532 2 456777766666655
No 64
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=0.069 Score=57.60 Aligned_cols=66 Identities=24% Similarity=0.521 Sum_probs=48.7
Q ss_pred ccccCcccccccccce----------eccCCChhhHHhHHHHhcC--CCCCCCCCCCCCCCCC------CCcHHHHHHHH
Q 003547 13 RELKCPICLSLLSSAV----------SLTCNHVFCNACIVKSMKS--GSNCPVCKVPYHRREI------RAAPHMDNLVS 74 (811)
Q Consensus 13 eeLtCpIClelL~dPV----------tLpCGHtFC~~CL~~~l~~--~~~CP~CR~~~~~~~L------~~n~~L~nLVd 74 (811)
++-.|.||.+-+..-+ .|+|+|.|--.||..|..- ..+||.|+..+.+..+ ++......|++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~~yg~Lld 302 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHVWYGQLLD 302 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchhHHHHHHH
Confidence 5678999998776544 6899999999999999764 3599999988765433 23444566666
Q ss_pred HHHh
Q 003547 75 VYKS 78 (811)
Q Consensus 75 ~lk~ 78 (811)
-++.
T Consensus 303 wlRy 306 (328)
T KOG1734|consen 303 WLRY 306 (328)
T ss_pred HHHH
Confidence 6654
No 65
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.15 Score=57.67 Aligned_cols=59 Identities=34% Similarity=0.681 Sum_probs=45.5
Q ss_pred ccccCcccccccccce-----eccCCChhhHHhHHHHhcC--CCCCCCCCCCCCCCCCCCcHHHHH
Q 003547 13 RELKCPICLSLLSSAV-----SLTCNHVFCNACIVKSMKS--GSNCPVCKVPYHRREIRAAPHMDN 71 (811)
Q Consensus 13 eeLtCpIClelL~dPV-----tLpCGHtFC~~CL~~~l~~--~~~CP~CR~~~~~~~L~~n~~L~n 71 (811)
...+||||++-+.-|+ .+.|||.|-..||++|+.. ...||.|......+.+++-+.++.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRV 68 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHH
Confidence 4578999999887664 4579999999999999964 258999987766666665555433
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.52 E-value=0.26 Score=40.55 Aligned_cols=42 Identities=31% Similarity=0.875 Sum_probs=21.2
Q ss_pred Ccccccccccc--eec--cCCChhhHHhHHHHhcC-CCCCCCCCCCC
Q 003547 17 CPICLSLLSSA--VSL--TCNHVFCNACIVKSMKS-GSNCPVCKVPY 58 (811)
Q Consensus 17 CpIClelL~dP--VtL--pCGHtFC~~CL~~~l~~-~~~CP~CR~~~ 58 (811)
||+|.+.+..- -.+ +||..+|+.|+.+.+.. ...||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877211 123 58899999999998874 67999999875
No 67
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.13 E-value=0.19 Score=56.81 Aligned_cols=44 Identities=27% Similarity=0.743 Sum_probs=37.0
Q ss_pred cCcccccccccceeccCCChhhHHhHHHHhcC--CCCCCCCCCCCC
Q 003547 16 KCPICLSLLSSAVSLTCNHVFCNACIVKSMKS--GSNCPVCKVPYH 59 (811)
Q Consensus 16 tCpIClelL~dPVtLpCGHtFC~~CL~~~l~~--~~~CP~CR~~~~ 59 (811)
.|.||.+-=++-..-||||..|..||..|... +..||.||..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 58999987777666799999999999999854 469999997664
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=0.22 Score=55.52 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=42.5
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
.++-.||||---...+|..||+|.-|..||.+.+-....|-.|.+.+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 467889999998889999999999999999999988888999977654
No 69
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=87.76 E-value=0.46 Score=43.05 Aligned_cols=30 Identities=27% Similarity=0.701 Sum_probs=27.3
Q ss_pred cCCChhhHHhHHHHhcCCCCCCCCCCCCCC
Q 003547 31 TCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60 (811)
Q Consensus 31 pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~ 60 (811)
-|.|.|-..||.+|+..+..||++|+....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 499999999999999999999999987653
No 70
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.33 Score=57.58 Aligned_cols=41 Identities=39% Similarity=0.831 Sum_probs=33.6
Q ss_pred hccccccCcccccccc----cceeccCCChhhHHhHHHHhcCCCCCC
Q 003547 10 KMGRELKCPICLSLLS----SAVSLTCNHVFCNACIVKSMKSGSNCP 52 (811)
Q Consensus 10 ~L~eeLtCpIClelL~----dPVtLpCGHtFC~~CL~~~l~~~~~CP 52 (811)
.+.+.|.|+||+.+|. .||.+-|||+.|..|++...... ||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~s--cp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNAS--CP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhcc--CC
Confidence 3566789999988774 79999999999999998877654 55
No 71
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=87.28 E-value=0.24 Score=62.15 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=71.0
Q ss_pred cccccchhhHHhhhhcCCcccCCcCCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcccCce
Q 003547 594 RGSSDIGVLEKLHKTQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNV 673 (811)
Q Consensus 594 ~v~~~~~~i~~~~~~~~~~lrpC~s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWSPeV 673 (811)
-+|..|++...-..-.-|.+..|....-...|+||+..+ |+++...+| .|+|+-|+.|-|++
T Consensus 599 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g-----~al~p~d~g-------------r~~~~e~a~~~~e~ 660 (1005)
T KOG1080|consen 599 SVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKG-----GALKPTDEG-------------RWVHVECAWFRPEV 660 (1005)
T ss_pred cCCCcccccCCCCCCCcchhhccccccCCchhhhccccC-----cccCCCCcc-------------chhhhhchhccccc
Confidence 556777776555445556666665334478999999998 888765433 69999999999999
Q ss_pred eeeC----CcccchHHHHHHhhcccccccCCCCceeecCccCCCcceecccccc
Q 003547 674 YFED----DTVINLEAELARSRRIKCCCCGLKGAALGCYEKTCRKSFHVPCAKL 723 (811)
Q Consensus 674 ~f~~----~~l~dI~~~i~ra~~lkC~~Cgk~GAsI~C~~~~C~rsFHvpCA~~ 723 (811)
.+.. ....++...........|.+ .|-+.+|+ .|...||..||..
T Consensus 661 ~~~~~~~~~p~~~~~~~p~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~a~~ 709 (1005)
T KOG1080|consen 661 CLASPERMEPAVGTFKIPALSFLKICFI---HGSCRQCC--KCETGSHAMCASR 709 (1005)
T ss_pred cCCCccCCCCcccccccCccchhhhccc---cccccccc--hhhhcceehhhcC
Confidence 8873 22333333333434445555 56666665 4777777777765
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=0.44 Score=53.85 Aligned_cols=49 Identities=27% Similarity=0.813 Sum_probs=36.3
Q ss_pred ccCcccccccccceec----cCCChhhHHhHHHHhcCC---CCCCCCCCCCCCCCC
Q 003547 15 LKCPICLSLLSSAVSL----TCNHVFCNACIVKSMKSG---SNCPVCKVPYHRREI 63 (811)
Q Consensus 15 LtCpIClelL~dPVtL----pCGHtFC~~CL~~~l~~~---~~CP~CR~~~~~~~L 63 (811)
..|+||.+.+-.--.+ .|||+|-..|+..|+... ..||.|+..+..+.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 4699997665443333 499999999999999873 379999955554444
No 73
>PF04641 Rtf2: Rtf2 RING-finger
Probab=86.77 E-value=0.5 Score=50.78 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=40.8
Q ss_pred ccccccCccccccccc---ceec-cCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCC
Q 003547 11 MGRELKCPICLSLLSS---AVSL-TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREI 63 (811)
Q Consensus 11 L~eeLtCpIClelL~d---PVtL-pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L 63 (811)
-...+.|||....|.. -|.| +|||.|+..+|...- ....||+|..++...++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 3567899999998853 2333 899999999999874 34579999999986653
No 74
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=86.35 E-value=0.1 Score=45.61 Aligned_cols=46 Identities=30% Similarity=0.675 Sum_probs=22.4
Q ss_pred cccCcccccccc-c---ceec----cCCChhhHHhHHHHhcC----C-------CCCCCCCCCCC
Q 003547 14 ELKCPICLSLLS-S---AVSL----TCNHVFCNACIVKSMKS----G-------SNCPVCKVPYH 59 (811)
Q Consensus 14 eLtCpIClelL~-d---PVtL----pCGHtFC~~CL~~~l~~----~-------~~CP~CR~~~~ 59 (811)
++.|+||..++. + |+.. .|+..|-..||..|+.. + ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998754 2 3332 68999999999999863 1 25999998764
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=86.26 E-value=0.37 Score=40.73 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=36.4
Q ss_pred cccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHR 60 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~ 60 (811)
.....|-.|...-...+.++|||..|..|..-. .-..||.|.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 345677788888788899999999999997422 22579999998764
No 76
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.62 E-value=0.45 Score=57.68 Aligned_cols=44 Identities=34% Similarity=0.807 Sum_probs=38.4
Q ss_pred ccCcccccccccceeccCCChhhHHhHHHHhcCC--CCCCCCCCCCC
Q 003547 15 LKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG--SNCPVCKVPYH 59 (811)
Q Consensus 15 LtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~--~~CP~CR~~~~ 59 (811)
..|+||.+ ...++.+.|+|.||..|+...+... ..||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 8888899999999999999988763 37999987654
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=0.18 Score=55.04 Aligned_cols=41 Identities=29% Similarity=0.788 Sum_probs=33.7
Q ss_pred cccCcccccccccceeccCCCh-hhHHhHHHHhcCCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVSLTCNHV-FCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHt-FC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
...|.||++...+-+.|+|||. -|..|-.+. ..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 6689999999999999999994 588886443 3899998753
No 78
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=84.76 E-value=0.88 Score=37.25 Aligned_cols=40 Identities=20% Similarity=0.598 Sum_probs=31.7
Q ss_pred cCccccc--ccccceeccCC-----ChhhHHhHHHHhcCC--CCCCCCC
Q 003547 16 KCPICLS--LLSSAVSLTCN-----HVFCNACIVKSMKSG--SNCPVCK 55 (811)
Q Consensus 16 tCpICle--lL~dPVtLpCG-----HtFC~~CL~~~l~~~--~~CP~CR 55 (811)
.|-||++ .-.+|+..||. |.+-..||.+|+... ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 45577778985 678999999999754 4899984
No 79
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.22 E-value=1.6 Score=48.37 Aligned_cols=65 Identities=25% Similarity=0.567 Sum_probs=49.3
Q ss_pred ccccccCcccccccccce-eccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 003547 11 MGRELKCPICLSLLSSAV-SLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 11 L~eeLtCpIClelL~dPV-tLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk~~e~ 81 (811)
..+.|.||||.+.+..|+ +-+=||.-|..|-.+. ...||.||.++. ++ ....++.+++.+...++
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g--~~-R~~amEkV~e~~~vpC~ 110 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SNKCPTCRLPIG--NI-RCRAMEKVAEAVLVPCK 110 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh---cccCCccccccc--cH-HHHHHHHHHHhceeccc
Confidence 456789999999999997 4467899999997643 358999999886 33 56677777777655444
No 80
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.17 E-value=1 Score=49.42 Aligned_cols=49 Identities=29% Similarity=0.819 Sum_probs=37.1
Q ss_pred cCccccc-ccccc-eec---cCCChhhHHhHHHHhcCC-CCCCCCCCCCCCCCCC
Q 003547 16 KCPICLS-LLSSA-VSL---TCNHVFCNACIVKSMKSG-SNCPVCKVPYHRREIR 64 (811)
Q Consensus 16 tCpICle-lL~dP-VtL---pCGHtFC~~CL~~~l~~~-~~CP~CR~~~~~~~L~ 64 (811)
.||+|.. .+.+| +.+ +|+|..|-.|+-+.+..+ ..||.|...+....++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 4899983 45555 222 899999999999988765 5999999888765543
No 81
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.42 E-value=0.5 Score=52.94 Aligned_cols=48 Identities=33% Similarity=0.708 Sum_probs=36.2
Q ss_pred hhccccccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 9 EKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 9 e~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
.++.....|-||++-..+.+.+||||.-| |..-.. .-..||+||..+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 34566788999999999999999999866 654322 2246999998653
No 82
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=81.20 E-value=0.41 Score=54.34 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=63.8
Q ss_pred cceehhhhhcccCce--eee---------CCcccchHH-HHHHhhcccccccCCCCceee----cC-ccCCCcceecccc
Q 003547 659 IIHSHRNCTEWAPNV--YFE---------DDTVINLEA-ELARSRRIKCCCCGLKGAALG----CY-EKTCRKSFHVPCA 721 (811)
Q Consensus 659 ~iWVH~~CALWSPeV--~f~---------~~~l~dI~~-~i~ra~~lkC~~Cgk~GAsI~----C~-~~~C~rsFHvpCA 721 (811)
.+|+|..|++|...- .-. .+.+..++. ...+...+.|.+|..+||.+. |. ...|.++||+.||
T Consensus 146 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~~a~ts~~~~~~~~~~c~~~~e~~~~ 225 (375)
T KOG1084|consen 146 SFEARMGCILIQNSRNGPAPEARLLCFSKSFLIESHEKVEDKCSEALNCKLCHEPGAPTSQFDPCDIDDDCNRSREFFCA 225 (375)
T ss_pred hhhhccchhHHhhccCCCCcccccchhhhhhhHHhhhhhhhhcccccccccccCCCCcccccCCcchhhhhhhhhhhhhh
Confidence 479999999998773 211 344555556 677788899999999999987 77 6789999999999
Q ss_pred cccCccccc---cCceeecccCccCC
Q 003547 722 KLILQCRWD---TDNFVMLCPLHTSS 744 (811)
Q Consensus 722 ~~~~gc~~d---~~~f~~fC~~H~p~ 744 (811)
+...--+.+ ..-|..+|..|.+.
T Consensus 226 l~~~~~~~d~~~~~~~h~~c~~~~~~ 251 (375)
T KOG1084|consen 226 LSPKATIPDIGFELWYHRYCALWAPN 251 (375)
T ss_pred hcCCCcCCccchhHHHHHHHHhcCCc
Confidence 873222222 23378889999985
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.06 E-value=1.2 Score=43.84 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=42.1
Q ss_pred ccccCcccccccccceec----cCCChhhHHhHHHHhcC---CCCCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLSSAVSL----TCNHVFCNACIVKSMKS---GSNCPVCKVPYHRR 61 (811)
Q Consensus 13 eeLtCpIClelL~dPVtL----pCGHtFC~~CL~~~l~~---~~~CP~CR~~~~~~ 61 (811)
....|.||.+...+...| -||-..|..|....|+. ...||+|++.+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 456899999999999888 39999999999999986 46999999988643
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=0.98 Score=50.21 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=40.4
Q ss_pred cccccCcccccccccceecc-CCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAVSLT-CNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 12 ~eeLtCpIClelL~dPVtLp-CGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
.+.-.||||+.--.+|..+. -|-.||..|+..++.....||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34568999999999998886 599999999999999888999876554
No 85
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=79.82 E-value=2.2 Score=39.62 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred cccccCCCCceeecCccCCCcceecccccccCccccccCceeecccCccCCCCCCCCCCCcccccccccccccccccccC
Q 003547 694 KCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVA 773 (811)
Q Consensus 694 kC~~Cgk~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~e~~~p~~~~ 773 (811)
.|.+|.+.|..+.-.. -..+.|+.||...++..+.... . -.+.. .+.....+....|.+|.. ..+
T Consensus 2 ~C~lC~~~~Galk~t~--~~~WvHv~Cal~~~~~~~~~~~-~-----~~~v~--~~~i~~~~~~~~C~iC~~---~~G-- 66 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTS--DGQWVHVLCALWIPEVIFNNGE-S-----MEPVD--ISNIPPSRFKLKCSICGK---SGG-- 66 (110)
T ss_pred ccEeCCCCCCcccCcc--CCcEEEeEccceeCccEEeech-h-----cCccc--ceeecchhcCCcCcCCCC---CCc--
Confidence 5999998866665433 4789999999875554443222 0 00111 111111123689999985 221
Q ss_pred cccccccc----cccccchhhhhcccccccccee
Q 003547 774 FKSDISTN----SWQSWENKLVLCCSALTVGEQV 803 (811)
Q Consensus 774 ~s~~i~~~----c~~awfHR~Ciq~~ALsaG~k~ 803 (811)
-.+.| | ..+||=.|.+...+......
T Consensus 67 ---~~i~C~~~~C-~~~fH~~CA~~~g~~~~~~~ 96 (110)
T PF13832_consen 67 ---ACIKCSHPGC-STAFHPTCARKAGLYFEIEN 96 (110)
T ss_pred ---eeEEcCCCCC-CcCCCHHHHHHCCCeEEeee
Confidence 12334 3 36799999776665554443
No 86
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.93 E-value=0.99 Score=55.79 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=35.9
Q ss_pred cccCcccccccc-----cc--eeccCCChhhHHhHHHHhcCC--CCCCCCCCCCC
Q 003547 14 ELKCPICLSLLS-----SA--VSLTCNHVFCNACIVKSMKSG--SNCPVCKVPYH 59 (811)
Q Consensus 14 eLtCpIClelL~-----dP--VtLpCGHtFC~~CL~~~l~~~--~~CP~CR~~~~ 59 (811)
.-.|+||-.++. =| ..-.|.|-|-..||-+|+... ..||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 447999998776 12 233599999999999999873 69999997654
No 87
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.72 E-value=0.96 Score=48.30 Aligned_cols=45 Identities=29% Similarity=0.752 Sum_probs=31.3
Q ss_pred ccCccccccc-cccee-ccCCChhhHHhHHHHhcCCCCCCCCCCCCCCC
Q 003547 15 LKCPICLSLL-SSAVS-LTCNHVFCNACIVKSMKSGSNCPVCKVPYHRR 61 (811)
Q Consensus 15 LtCpIClelL-~dPVt-LpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~ 61 (811)
+.|-.|..-- .+|.. +.|.|.||..|..... ...||.|++++...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeee
Confidence 4577676433 45554 4899999999985432 23899999987644
No 88
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.36 E-value=2.1 Score=47.91 Aligned_cols=53 Identities=25% Similarity=0.650 Sum_probs=41.7
Q ss_pred hhhhhccccccCcccccccccceeccCCChhhHHhHHHH--hcCCCCCCCCCCCC
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKS--MKSGSNCPVCKVPY 58 (811)
Q Consensus 6 s~le~L~eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~--l~~~~~CP~CR~~~ 58 (811)
+..+.-++...|-||..-+.=-..+||+|..|..|-.+. +-....||.||+..
T Consensus 53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 344445678899999998877778999999999998654 33467999999764
No 89
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=2.2 Score=48.56 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=37.4
Q ss_pred ccccccCccccccc---ccceeccCCChhhHHhHHHHhcCC---CCCCCCCCCC
Q 003547 11 MGRELKCPICLSLL---SSAVSLTCNHVFCNACIVKSMKSG---SNCPVCKVPY 58 (811)
Q Consensus 11 L~eeLtCpIClelL---~dPVtLpCGHtFC~~CL~~~l~~~---~~CP~CR~~~ 58 (811)
+...+.|||=.+.- ..|+.|.|||..|..-|.+...++ +.||+|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 35567999866533 367899999999999999888764 6899996543
No 90
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.51 E-value=1.8 Score=46.64 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=29.9
Q ss_pred ccccCcccccccccceeccCCChhhHHhHHHHhc
Q 003547 13 RELKCPICLSLLSSAVSLTCNHVFCNACIVKSMK 46 (811)
Q Consensus 13 eeLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~ 46 (811)
+.--|.+|++.+.+||..+=||.||+.||.+++.
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3446899999999999999999999999988653
No 91
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=2.4 Score=40.29 Aligned_cols=27 Identities=33% Similarity=0.723 Sum_probs=25.1
Q ss_pred cCCChhhHHhHHHHhcCCCCCCCCCCC
Q 003547 31 TCNHVFCNACIVKSMKSGSNCPVCKVP 57 (811)
Q Consensus 31 pCGHtFC~~CL~~~l~~~~~CP~CR~~ 57 (811)
-|.|.|-..||.+|+++...||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999999999999999765
No 92
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=73.27 E-value=2.8 Score=50.93 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=65.6
Q ss_pred CCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhh--hcccCceeeeCCcccchHHHHHHhhccccccc
Q 003547 621 HKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNC--TEWAPNVYFEDDTVINLEAELARSRRIKCCCC 698 (811)
Q Consensus 621 ~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~C--ALWSPeV~f~~~~l~dI~~~i~ra~~lkC~~C 698 (811)
....|.+|...+..+ ..+|+-. |- .++.||..| ++-.|+--.-... ..+ +..-.|.+|
T Consensus 270 edviCDvCrspD~e~-~neMVfC--------d~----Cn~cVHqaCyGIle~p~gpWlCr~-Cal------g~~ppCvLC 329 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEE-ANEMVFC--------DK----CNICVHQACYGILEVPEGPWLCRT-CAL------GIEPPCVLC 329 (893)
T ss_pred ccceeceecCCCccc-cceeEEe--------cc----chhHHHHhhhceeecCCCCeeehh-ccc------cCCCCeeec
Confidence 678899999886322 2344322 22 247999999 4555552111000 000 034579999
Q ss_pred CCCCceeecCccCCCcceecccccccCccccccCceeecccCccCCCCCCCCCCCcccccccccccc
Q 003547 699 GLKGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKL 765 (811)
Q Consensus 699 gk~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~e 765 (811)
-++|..+.=...+ .++-|+.||..+.+++ +=|++-..-..-.+.-+.....-.|..|..
T Consensus 330 PkkGGamK~~~sg-T~wAHvsCALwIPEVs-------ie~~ekmePItkfs~IpesRwslvC~LCk~ 388 (893)
T KOG0954|consen 330 PKKGGAMKPTKSG-TKWAHVSCALWIPEVS-------IECPEKMEPITKFSHIPESRWSLVCNLCKV 388 (893)
T ss_pred cccCCcccccCCC-CeeeEeeeeeccceee-------ccCHhhcCcccccCCCcHHHHHHHHHHhcc
Confidence 9999988755444 5899999997644433 334444332111222222223677888874
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=6.4 Score=42.07 Aligned_cols=68 Identities=22% Similarity=0.474 Sum_probs=46.3
Q ss_pred hccccccCcccccccc--cceeccCCChhhHHhHHHHhcC--------CCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003547 10 KMGRELKCPICLSLLS--SAVSLTCNHVFCNACIVKSMKS--------GSNCPVCKVPYHRREIRAAPHMDNLVSVYK 77 (811)
Q Consensus 10 ~L~eeLtCpIClelL~--dPVtLpCGHtFC~~CL~~~l~~--------~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk 77 (811)
+-+-.-.|.+|.-.|. +-+.|-|-|.|-..|+.++... +..||.|...+-...-...+....|-+.++
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLre~L~ 123 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALREQLK 123 (299)
T ss_pred hcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHHHHHH
Confidence 3345568999998886 5677899999999999988764 358999988754322123333344444444
No 94
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.74 E-value=1.7 Score=39.16 Aligned_cols=44 Identities=27% Similarity=0.766 Sum_probs=32.9
Q ss_pred cCcccccccc------------cceec-cCCChhhHHhHHHHhcC---CCCCCCCCCCCC
Q 003547 16 KCPICLSLLS------------SAVSL-TCNHVFCNACIVKSMKS---GSNCPVCKVPYH 59 (811)
Q Consensus 16 tCpIClelL~------------dPVtL-pCGHtFC~~CL~~~l~~---~~~CP~CR~~~~ 59 (811)
+|-||.-.|. =|+.+ -|.|.|-..||.+|+.. +..||+||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5666665553 24444 49999999999999976 358999998764
No 95
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=72.58 E-value=2.9 Score=33.47 Aligned_cols=28 Identities=29% Similarity=0.826 Sum_probs=23.5
Q ss_pred cccccCC---CCceeecCccCCCcceecccccc
Q 003547 694 KCCCCGL---KGAALGCYEKTCRKSFHVPCAKL 723 (811)
Q Consensus 694 kC~~Cgk---~GAsI~C~~~~C~rsFHvpCA~~ 723 (811)
.|.+|++ .+-.|.|. .|.+.||..|...
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTS
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCC
Confidence 4889988 46679997 7999999999965
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.73 E-value=2.6 Score=47.14 Aligned_cols=52 Identities=21% Similarity=0.660 Sum_probs=36.9
Q ss_pred cccccCcccccccccc--eec--cCCChhhHHhHHHHhcC-CCCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSA--VSL--TCNHVFCNACIVKSMKS-GSNCPVCKVPYHRREI 63 (811)
Q Consensus 12 ~eeLtCpIClelL~dP--VtL--pCGHtFC~~CL~~~l~~-~~~CP~CR~~~~~~~L 63 (811)
+++-.||+|.+.+..- -.. +||-..|+.|+...... ...||.||..+...+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 4555699999876522 222 68888899998765444 3589999988876544
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=65.77 E-value=2.4 Score=54.28 Aligned_cols=51 Identities=29% Similarity=0.616 Sum_probs=43.5
Q ss_pred hhhccccccCcccccccc-cceeccCCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 8 LEKMGRELKCPICLSLLS-SAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 8 le~L~eeLtCpIClelL~-dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
+..+-....|+||++.+. .-....|||.||..|+..|+.....||.|....
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 445567789999999999 556778999999999999999999999997543
No 98
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.62 E-value=3.9 Score=50.48 Aligned_cols=41 Identities=24% Similarity=0.644 Sum_probs=34.6
Q ss_pred cccCccccccccccee-ccCCChhhHHhHHHHhcCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVS-LTCNHVFCNACIVKSMKSGSNCPVCKVP 57 (811)
Q Consensus 14 eLtCpIClelL~dPVt-LpCGHtFC~~CL~~~l~~~~~CP~CR~~ 57 (811)
.-.|.+|.-.|.-|++ ..|||+|-..|+. .....||.|+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 3589999999999964 7999999999997 344689999773
No 99
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.80 E-value=6.3 Score=45.29 Aligned_cols=45 Identities=29% Similarity=0.640 Sum_probs=33.5
Q ss_pred cccccCcccccccccc---eeccCCChhhHHhHHHHhcC--------CCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSA---VSLTCNHVFCNACIVKSMKS--------GSNCPVCKV 56 (811)
Q Consensus 12 ~eeLtCpIClelL~dP---VtLpCGHtFC~~CL~~~l~~--------~~~CP~CR~ 56 (811)
...+.|.||.+...-- +.+||+|.||+.|+..++.. ...||.+.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4567899999876542 35799999999999988753 146776543
No 100
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=62.62 E-value=3.3 Score=47.12 Aligned_cols=44 Identities=27% Similarity=0.791 Sum_probs=35.2
Q ss_pred ccccCcccccccc-cc--e-eccCCChhhHHhHHHHhcCC--CCCCCCCC
Q 003547 13 RELKCPICLSLLS-SA--V-SLTCNHVFCNACIVKSMKSG--SNCPVCKV 56 (811)
Q Consensus 13 eeLtCpIClelL~-dP--V-tLpCGHtFC~~CL~~~l~~~--~~CP~CR~ 56 (811)
-+|.|..|.+.+- .| . -|||.|.|-..|+.+++.+. ..||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3689999998764 22 2 36999999999999998764 59999983
No 101
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=61.27 E-value=3 Score=37.79 Aligned_cols=32 Identities=31% Similarity=0.693 Sum_probs=26.1
Q ss_pred ccccccCccccccccccee--ccCCChhhHHhHH
Q 003547 11 MGRELKCPICLSLLSSAVS--LTCNHVFCNACIV 42 (811)
Q Consensus 11 L~eeLtCpIClelL~dPVt--LpCGHtFC~~CL~ 42 (811)
+.+.-.|++|...|...+. .||||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3566789999999987753 5999999999974
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=11 Score=43.05 Aligned_cols=42 Identities=29% Similarity=0.653 Sum_probs=29.3
Q ss_pred cccCcccccccccc-e---eccCCChhhHHhHHHHhcC------CCCCCCCC
Q 003547 14 ELKCPICLSLLSSA-V---SLTCNHVFCNACIVKSMKS------GSNCPVCK 55 (811)
Q Consensus 14 eLtCpIClelL~dP-V---tLpCGHtFC~~CL~~~l~~------~~~CP~CR 55 (811)
..+|.||..-...+ . +..|+|-||..|+..++.. ...||.-+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~ 197 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDG 197 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCC
Confidence 57899999333322 2 3469999999999988763 24676543
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=58.63 E-value=5.3 Score=44.40 Aligned_cols=41 Identities=29% Similarity=0.659 Sum_probs=27.8
Q ss_pred cCcccccccccc-eeccCCChhhHHhHHHHhcCCCCCCCCCCCC
Q 003547 16 KCPICLSLLSSA-VSLTCNHVFCNACIVKSMKSGSNCPVCKVPY 58 (811)
Q Consensus 16 tCpIClelL~dP-VtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~ 58 (811)
.|--|.-.+..- ..++|.|.||..|-.. .....||.|-..+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 466676544332 3679999999999742 3356899995443
No 104
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=57.75 E-value=4 Score=33.64 Aligned_cols=43 Identities=26% Similarity=0.731 Sum_probs=22.0
Q ss_pred cccCcccccccccceec-cCCChhhHHhHHHHhc-----CCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVSL-TCNHVFCNACIVKSMK-----SGSNCPVCKVP 57 (811)
Q Consensus 14 eLtCpIClelL~dPVtL-pCGHtFC~~CL~~~l~-----~~~~CP~CR~~ 57 (811)
.|.|||....+..|+.- .|.|.-|.+ +..|+. ....||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 37899999999999975 799986643 223332 13589999763
No 105
>PHA03096 p28-like protein; Provisional
Probab=57.03 E-value=6.4 Score=43.38 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=29.0
Q ss_pred ccCcccccccc-cce------ec-cCCChhhHHhHHHHhcCC---CCCCCCCC
Q 003547 15 LKCPICLSLLS-SAV------SL-TCNHVFCNACIVKSMKSG---SNCPVCKV 56 (811)
Q Consensus 15 LtCpIClelL~-dPV------tL-pCGHtFC~~CL~~~l~~~---~~CP~CR~ 56 (811)
-.|.||++... .++ .| .|.|.||..|+..|.... -.||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999998543 221 12 699999999999888653 24555543
No 106
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.79 E-value=7.7 Score=32.92 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=29.9
Q ss_pred cccccccCCC----CceeecCccCCCcceecccccccCcccc
Q 003547 692 RIKCCCCGLK----GAALGCYEKTCRKSFHVPCAKLILQCRW 729 (811)
Q Consensus 692 ~lkC~~Cgk~----GAsI~C~~~~C~rsFHvpCA~~~~gc~~ 729 (811)
.-+|.+||++ +.-+.|- .|.+.||-.|+...++|+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceEe
Confidence 3579999964 6788995 6999999999988778875
No 107
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=51.42 E-value=14 Score=48.15 Aligned_cols=48 Identities=29% Similarity=0.811 Sum_probs=34.6
Q ss_pred cccccCccccc-cc-ccc-eeccCCChhhHHhHHHHhcC---------C-CCCCCCCCCCC
Q 003547 12 GRELKCPICLS-LL-SSA-VSLTCNHVFCNACIVKSMKS---------G-SNCPVCKVPYH 59 (811)
Q Consensus 12 ~eeLtCpICle-lL-~dP-VtLpCGHtFC~~CL~~~l~~---------~-~~CP~CR~~~~ 59 (811)
+.+-.|-||+- .| ..| ++|.|+|.|-..|..+.+.. + ..||.|...+.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45678999984 33 334 68999999988887765543 1 37999988764
No 108
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=50.67 E-value=11 Score=41.44 Aligned_cols=44 Identities=34% Similarity=0.816 Sum_probs=36.1
Q ss_pred ccccCcccccccc----cceeccCCChhhHHhHHHHhcCCCCCCCCCC
Q 003547 13 RELKCPICLSLLS----SAVSLTCNHVFCNACIVKSMKSGSNCPVCKV 56 (811)
Q Consensus 13 eeLtCpIClelL~----dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~ 56 (811)
....||||.+.+. .|..++|||..=..|+......+..||.|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3556999998553 5667899999889999988877799999977
No 109
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.58 E-value=5.8 Score=47.55 Aligned_cols=28 Identities=32% Similarity=0.750 Sum_probs=24.6
Q ss_pred ccccccCCCCce---eecCccCCCcceeccccc
Q 003547 693 IKCCCCGLKGAA---LGCYEKTCRKSFHVPCAK 722 (811)
Q Consensus 693 lkC~~Cgk~GAs---I~C~~~~C~rsFHvpCA~ 722 (811)
..|+.|+..|.- |.|.. |.++||+.|--
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~--Cp~sFH~~CLe 284 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDG--CPRSFHQTCLE 284 (613)
T ss_pred HHHHHhCCccccccceeecC--CchHHHHhhcC
Confidence 479999999988 77765 99999999984
No 110
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=48.42 E-value=13 Score=47.41 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=79.8
Q ss_pred CCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhh--cccCceeeeCCc-ccchHHHHHHhhcccc
Q 003547 619 LAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCT--EWAPNVYFEDDT-VINLEAELARSRRIKC 695 (811)
Q Consensus 619 ~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CA--LWSPeV~f~~~~-l~dI~~~i~ra~~lkC 695 (811)
......|++|....-.. +.. .|..|-. ++.||..|- -+.||....... +. ...+...|
T Consensus 216 ~~~D~~C~iC~~~~~~n-~n~--------ivfCD~C----nl~VHq~Cygi~~ipeg~WlCr~Cl~------s~~~~v~c 276 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQN-SNV--------IVFCDGC----NLAVHQECYGIPFIPEGQWLCRRCLQ------SPQRPVRC 276 (1051)
T ss_pred cCCCccceeecccccCC-Cce--------EEEcCCC----cchhhhhccCCCCCCCCcEeehhhcc------CcCcccce
Confidence 56777899999876321 011 2222323 478999995 466664433211 11 11222679
Q ss_pred cccCC-CCceeecCccCCCcceecccccccCccccccCceeecccCccCCCCCCCCCCCcccccccccccccccccccCc
Q 003547 696 CCCGL-KGAALGCYEKTCRKSFHVPCAKLILQCRWDTDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAF 774 (811)
Q Consensus 696 ~~Cgk-~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~e~~~p~~~~~ 774 (811)
..|-- .||-.+=.. .++-|+.||.-.....|.. + +|-.-|.... ..+.....-.|-||.. .+.+.
T Consensus 277 ~~cp~~~gAFkqt~d---grw~Hv~caiwipev~F~n-t--~~~E~I~~i~----~i~~aRwkL~cy~cK~----~~~ga 342 (1051)
T KOG0955|consen 277 LLCPSKGGAFKQTDD---GRWAHVVCAIWIPEVSFAN-T--VFLEPIDSIE----NIPPARWKLTCYICKQ----KGLGA 342 (1051)
T ss_pred EeccCCCCcceeccC---Cceeeeehhhccccccccc-c--hhhccccchh----cCcHhhhhceeeeecc----CCCCc
Confidence 99974 577766433 7899999998754443322 2 4444443321 1112224678999985 11111
Q ss_pred ccccccc--cccccchhhhhccccccc
Q 003547 775 KSDISTN--SWQSWENKLVLCCSALTV 799 (811)
Q Consensus 775 s~~i~~~--c~~awfHR~Ciq~~ALsa 799 (811)
-|.-. --.+|||..|-++..|.-
T Consensus 343 --ciqcs~~~c~~a~hvtca~~agl~m 367 (1051)
T KOG0955|consen 343 --CIQCSKANCYTAFHVTCARRAGLYM 367 (1051)
T ss_pred --ceecchhhhhhhhhhhhHhhcCceE
Confidence 11111 234789999987766643
No 111
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=47.12 E-value=18 Score=42.59 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=85.0
Q ss_pred CcccCCcCCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcccCceeeeCCcccc-----hHH
Q 003547 611 GALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNVYFEDDTVIN-----LEA 685 (811)
Q Consensus 611 ~~lrpC~s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWSPeV~f~~~~l~d-----I~~ 685 (811)
.+++..-+......|..|--.. .+..|.+++.. -. +|-||.-|---.-.|...++.... .-.
T Consensus 108 ape~~~Sapkk~~iCcVClg~r-s~da~ei~qCd--------~C----Gi~VHEgCYGv~dn~si~s~~s~~stepWfCe 174 (707)
T KOG0957|consen 108 APERTPSAPKKAVICCVCLGQR-SVDAGEILQCD--------KC----GINVHEGCYGVLDNVSIPSGSSDCSTEPWFCE 174 (707)
T ss_pred CcccccCccccceEEEEeecCc-cccccceeecc--------cc----CceecccccccccccccCCCCccCCCCchhhh
Confidence 3333333334444899997544 33446655543 23 378999995444333333211100 001
Q ss_pred HHHHhhc-ccccccCCCCceeecCccCCCcceecccccccCccccc-cCceeecccCccCCCCCCCCCCCcccccccccc
Q 003547 686 ELARSRR-IKCCCCGLKGAALGCYEKTCRKSFHVPCAKLILQCRWD-TDNFVMLCPLHTSSNLPNENPGSQESRKKCISK 763 (811)
Q Consensus 686 ~i~ra~~-lkC~~Cgk~GAsI~C~~~~C~rsFHvpCA~~~~gc~~d-~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic 763 (811)
+-..+.. -.|-+|-.+|.... ...-.++.|.-||....|+.|. ..+....-+.|-. +++=..+.|+.|
T Consensus 175 aC~~Gvs~P~CElCPn~~GifK--etDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~--------ysk~Gak~Cs~C 244 (707)
T KOG0957|consen 175 ACLYGVSLPHCELCPNRFGIFK--ETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMD--------YSKFGAKTCSAC 244 (707)
T ss_pred hHhcCCCCCccccCCCcCCccc--ccchhhHHHHHHHhhcCccccccccccccccHHHhh--------hhhhccchhccc
Confidence 1122222 46888877655443 2334599999999987776543 2222222233322 222346899999
Q ss_pred cccccccccCcccccccc--cccc----cchhhhhccccccc
Q 003547 764 KLLTQHNKVAFKSDISTN--SWQS----WENKLVLCCSALTV 799 (811)
Q Consensus 764 ~e~~~p~~~~~s~~i~~~--c~~a----wfHR~Ciq~~ALsa 799 (811)
.+ +.. ..+-+| |-.+ +||=.|-|..+|=.
T Consensus 245 ed---~~f----ARtGvci~CdaGMCk~YfHVTCAQk~GlLv 279 (707)
T KOG0957|consen 245 ED---KIF----ARTGVCIRCDAGMCKEYFHVTCAQKLGLLV 279 (707)
T ss_pred cc---hhh----hhcceeeeccchhhhhhhhhhHHhhhccee
Confidence 86 221 223334 5444 59999999887643
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=46.98 E-value=6.2 Score=42.51 Aligned_cols=47 Identities=26% Similarity=0.808 Sum_probs=34.8
Q ss_pred ccccCccccc-ccccc-eec---c-CCChhhHHhHHHHhcCCC-CCC--CCCCCCC
Q 003547 13 RELKCPICLS-LLSSA-VSL---T-CNHVFCNACIVKSMKSGS-NCP--VCKVPYH 59 (811)
Q Consensus 13 eeLtCpICle-lL~dP-VtL---p-CGHtFC~~CL~~~l~~~~-~CP--~CR~~~~ 59 (811)
.+-.||||.. .+-+| +.+ | |-|..|-+|+.+.+..+. .|| -|.+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3568999984 45555 322 5 999999999999988764 899 6765544
No 113
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=44.28 E-value=12 Score=40.90 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=24.5
Q ss_pred ccccccc-CCCCceeecCccCCC-cceeccccc
Q 003547 692 RIKCCCC-GLKGAALGCYEKTCR-KSFHVPCAK 722 (811)
Q Consensus 692 ~lkC~~C-gk~GAsI~C~~~~C~-rsFHvpCA~ 722 (811)
.++|+.. ...|.=|+|...+|. .+|||+|.-
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG 251 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVG 251 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEeccc
Confidence 3556544 345888999999999 999999983
No 114
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=39.27 E-value=16 Score=33.08 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=20.4
Q ss_pred ccccccCCC-CceeecCccCCCcceeccccc
Q 003547 693 IKCCCCGLK-GAALGCYEKTCRKSFHVPCAK 722 (811)
Q Consensus 693 lkC~~Cgk~-GAsI~C~~~~C~rsFHvpCA~ 722 (811)
..|.+|+++ |-. ....--|...||+.|+.
T Consensus 79 ~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 569999987 332 22333567999999985
No 115
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=38.98 E-value=29 Score=27.83 Aligned_cols=38 Identities=26% Similarity=0.736 Sum_probs=22.2
Q ss_pred Ccccccccccceec---cCCChhhHHhHHHHhcCCC--CCCCC
Q 003547 17 CPICLSLLSSAVSL---TCNHVFCNACIVKSMKSGS--NCPVC 54 (811)
Q Consensus 17 CpIClelL~dPVtL---pCGHtFC~~CL~~~l~~~~--~CP~C 54 (811)
|.+|.++...-+.= .|+-.+-..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66788877766643 3887788899999998754 79987
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.90 E-value=20 Score=40.21 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=35.4
Q ss_pred ccccccCccccccc---ccceeccCCChhhHHhHHHHhcCC---CCCCCCCCC
Q 003547 11 MGRELKCPICLSLL---SSAVSLTCNHVFCNACIVKSMKSG---SNCPVCKVP 57 (811)
Q Consensus 11 L~eeLtCpIClelL---~dPVtLpCGHtFC~~CL~~~l~~~---~~CP~CR~~ 57 (811)
+...++||+=.+.- ..|+.+.|||..-..-+......+ +.||.|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 45668899755433 367899999999998888776654 789999543
No 117
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=37.52 E-value=23 Score=43.66 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=48.3
Q ss_pred CCCcceecccccccCccccc--cCceeecccCccCCCCCCCCCCCcccccccccccccccccccCcccccccc--ccccc
Q 003547 711 TCRKSFHVPCAKLILQCRWD--TDNFVMLCPLHTSSNLPNENPGSQESRKKCISKKLLTQHNKVAFKSDISTN--SWQSW 786 (811)
Q Consensus 711 ~C~rsFHvpCA~~~~gc~~d--~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~Ic~e~~~p~~~~~s~~i~~~--c~~aw 786 (811)
.|.|.||..|+.. ..... .+.+.=-|.+|+..-.+............|-||.+ . -.++.| |. +|
T Consensus 1 ~~~r~~~~~~~~p--~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~----~-----g~~l~c~tC~-~s 68 (696)
T KOG0383|consen 1 TCPRAYHRVCLDP--KLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICAD----G-----GELLWCDTCP-AS 68 (696)
T ss_pred CCCcccCcCCCCc--ccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcC----C-----CcEEEecccc-HH
Confidence 4899999999964 22222 22233336667665444444444445799999975 1 145667 88 99
Q ss_pred chhhhhccccccc
Q 003547 787 ENKLVLCCSALTV 799 (811)
Q Consensus 787 fHR~Ciq~~ALsa 799 (811)
||-.|+---+.-.
T Consensus 69 ~h~~cl~~pl~~~ 81 (696)
T KOG0383|consen 69 FHASCLGPPLTPQ 81 (696)
T ss_pred HHHHccCCCCCcC
Confidence 9999995444433
No 118
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.58 E-value=21 Score=41.40 Aligned_cols=36 Identities=25% Similarity=0.737 Sum_probs=30.4
Q ss_pred cccccCccccccccc-ceeccCCChhhHHhHHHHhcC
Q 003547 12 GRELKCPICLSLLSS-AVSLTCNHVFCNACIVKSMKS 47 (811)
Q Consensus 12 ~eeLtCpIClelL~d-PVtLpCGHtFC~~CL~~~l~~ 47 (811)
.....|.||...+.. .+.+.|+|.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345789999998885 566799999999999998875
No 119
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=36.18 E-value=12 Score=34.26 Aligned_cols=44 Identities=25% Similarity=0.526 Sum_probs=29.9
Q ss_pred ccccccCCC--CceeecCc------------cCCCcceecccccc----cCccccccCceee
Q 003547 693 IKCCCCGLK--GAALGCYE------------KTCRKSFHVPCAKL----ILQCRWDTDNFVM 736 (811)
Q Consensus 693 lkC~~Cgk~--GAsI~C~~------------~~C~rsFHvpCA~~----~~gc~~d~~~f~~ 736 (811)
-.|.+|+.. |-|+.|.. +.|..+||.-|-.+ .+.|.++..+|.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 358888754 88888876 45999999999865 2334455444443
No 120
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=35.43 E-value=31 Score=40.15 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=58.6
Q ss_pred cccccccCCC--CceeecCccCCCcceecc------cccccCccc--cccCceeecccCccCCCCCCCCCCCcccccccc
Q 003547 692 RIKCCCCGLK--GAALGCYEKTCRKSFHVP------CAKLILQCR--WDTDNFVMLCPLHTSSNLPNENPGSQESRKKCI 761 (811)
Q Consensus 692 ~lkC~~Cgk~--GAsI~C~~~~C~rsFHvp------CA~~~~gc~--~d~~~f~~fC~~H~p~k~p~e~~~~~k~~~~C~ 761 (811)
.-+|..|++. ---| ..|.++||+- |++-..|.. .|.++ .+||-.--+.++ .-+|+
T Consensus 334 lekC~~Cg~~I~d~iL----rA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n-~v~Cv~dfh~kf----------APrCs 398 (468)
T KOG1701|consen 334 LEKCNKCGEPIMDRIL----RALGKAYHPGCFTCVVCARCLDGIPFTVDSQN-NVYCVPDFHKKF----------APRCS 398 (468)
T ss_pred HHHHhhhhhHHHHHHH----HhcccccCCCceEEEEeccccCCccccccCCC-ceeeehhhhhhc----------Ccchh
Confidence 3479999864 1111 1356667654 444333433 33443 788876665553 27899
Q ss_pred cccccccccccCcccccccccccccchhhhh----ccccccccceee----ecccccC
Q 003547 762 SKKLLTQHNKVAFKSDISTNSWQSWENKLVL----CCSALTVGEQVY----CTDTIFC 811 (811)
Q Consensus 762 Ic~e~~~p~~~~~s~~i~~~c~~awfHR~Ci----q~~ALsaG~k~~----~~~~~~~ 811 (811)
+|...+.|.. ...-.+++-+-+--||-.|- |+.-||..+--. |.|-|||
T Consensus 399 ~C~~PI~P~~-G~~etvRvvamdr~fHv~CY~CEDCg~~LS~e~e~qgCyPld~HllC 455 (468)
T KOG1701|consen 399 VCGNPILPRD-GKDETVRVVAMDRDFHVNCYKCEDCGLLLSSEEEGQGCYPLDGHLLC 455 (468)
T ss_pred hccCCccCCC-CCcceEEEEEccccccccceehhhcCccccccCCCCcceeccCceee
Confidence 9987555432 11112333355666888774 677788554432 3677776
No 121
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.54 E-value=13 Score=41.45 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=35.6
Q ss_pred ccccCcccccccc-cc--eeccCCChhhHHhHHHHhcC-----------------------CCCCCCCCCCCCC
Q 003547 13 RELKCPICLSLLS-SA--VSLTCNHVFCNACIVKSMKS-----------------------GSNCPVCKVPYHR 60 (811)
Q Consensus 13 eeLtCpIClelL~-dP--VtLpCGHtFC~~CL~~~l~~-----------------------~~~CP~CR~~~~~ 60 (811)
..-.|.||+.=|. .| +.++|.|-|-..||.+++.. .-.||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4557999998665 34 34689999999999887642 1379999987754
No 122
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.46 E-value=5 Score=35.69 Aligned_cols=41 Identities=34% Similarity=0.659 Sum_probs=21.8
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
++.||.|...|.. . =++.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~-~---~~~~~C~~C~~~~~~-~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW-Q---GGHYHCEACQKDYKK-EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE-E---TTEEEETTT--EEEE-EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE-e---CCEEECcccccccee-cccCCCcccHHH
Confidence 4789999987542 1 178888888765432 358999987654
No 123
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.73 E-value=38 Score=30.55 Aligned_cols=37 Identities=30% Similarity=0.627 Sum_probs=27.9
Q ss_pred cCCChhhHHhHHHHhcCCCCCCCCCCCCCCCCCCCcHHH
Q 003547 31 TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHM 69 (811)
Q Consensus 31 pCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~L~~n~~L 69 (811)
.=.|+||..|.+..+. ..||-|...+..+.+++...|
T Consensus 26 tfEcTFCadCae~~l~--g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 26 TFECTFCADCAENRLH--GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEeeehhHhHHHHhhc--CcCCCCCchhhcCcCChHHHH
Confidence 3458999999987664 579999988877777765444
No 124
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=32.57 E-value=27 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.761 Sum_probs=22.5
Q ss_pred CCChhhHHhHHHHhcC-------------CCCCCCCCCCCCCC
Q 003547 32 CNHVFCNACIVKSMKS-------------GSNCPVCKVPYHRR 61 (811)
Q Consensus 32 CGHtFC~~CL~~~l~~-------------~~~CP~CR~~~~~~ 61 (811)
|....|..|+-+|+.. +-.||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4455688999998764 24899999987644
No 125
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=31.25 E-value=22 Score=36.31 Aligned_cols=21 Identities=38% Similarity=0.918 Sum_probs=18.3
Q ss_pred ccccCcccccccccceeccCC
Q 003547 13 RELKCPICLSLLSSAVSLTCN 33 (811)
Q Consensus 13 eeLtCpIClelL~dPVtLpCG 33 (811)
++.+||||++...++|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 468999999999999998654
No 126
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.83 E-value=23 Score=37.44 Aligned_cols=39 Identities=28% Similarity=0.746 Sum_probs=29.4
Q ss_pred CcccccccccceeccCCC-hhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 17 CPICLSLLSSAVSLTCNH-VFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 17 CpIClelL~dPVtLpCGH-tFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
|-+|..--..-+.+||.| .+|..|-.. ...||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 888988777766789999 588888532 347999987643
No 127
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=28.08 E-value=21 Score=29.76 Aligned_cols=31 Identities=26% Similarity=0.864 Sum_probs=22.3
Q ss_pred eccCC-ChhhHHhHHHHhcCCCCCCCCCCCCC
Q 003547 29 SLTCN-HVFCNACIVKSMKSGSNCPVCKVPYH 59 (811)
Q Consensus 29 tLpCG-HtFC~~CL~~~l~~~~~CP~CR~~~~ 59 (811)
.+.|. |-.|..||...+.....||.|..+++
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 45676 67799999998888889999988764
No 128
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.41 E-value=42 Score=35.04 Aligned_cols=49 Identities=20% Similarity=0.588 Sum_probs=33.2
Q ss_pred cccccCcccccccccc-----e--eccCCChhhHHhHHHHhcC------C-----CCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSA-----V--SLTCNHVFCNACIVKSMKS------G-----SNCPVCKVPYHR 60 (811)
Q Consensus 12 ~eeLtCpIClelL~dP-----V--tLpCGHtFC~~CL~~~l~~------~-----~~CP~CR~~~~~ 60 (811)
++..-|.||..+--+- + .+.||..|-.-||..|+.. . ..||.|..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3444566665443322 2 2379999999999999874 1 379999988754
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=26.13 E-value=49 Score=38.75 Aligned_cols=47 Identities=17% Similarity=0.425 Sum_probs=28.3
Q ss_pred hcCCcccCCcCCCCCceeeeCCCCCCCCccCcceeecCCCcccccCCCCcccceehhhhhcccCce
Q 003547 608 TQRGALRKCETLAHKIQCSFCHSSENSEASGEMVHYYNGKPVSADYNGGSKIIHSHRNCTEWAPNV 673 (811)
Q Consensus 608 ~~~~~lrpC~s~~~~~~CaLC~~~~~~e~~G~m~~~~~Gk~V~ad~~~~s~~iWVH~~CALWSPeV 673 (811)
+..++++.| .|++|...+++. |+..- |.-|.. ++|+|.-|||-.--+
T Consensus 121 ~~~gFC~~C-------~C~iC~kfD~~~--n~~~W------i~Cd~C----gH~cH~dCALr~~~i 167 (446)
T PF07227_consen 121 SEPGFCRRC-------MCCICSKFDDNK--NTCSW------IGCDVC----GHWCHLDCALRHELI 167 (446)
T ss_pred CCCCccccC-------CccccCCcccCC--CCeeE------EeccCC----Cceehhhhhcccccc
Confidence 345666666 499998865432 22111 122333 389999999986643
No 130
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=25.18 E-value=51 Score=40.25 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=48.2
Q ss_pred hccccccCccccccccccee-ccCCChhhHHhHHHHhcC----CCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003547 10 KMGRELKCPICLSLLSSAVS-LTCNHVFCNACIVKSMKS----GSNCPVCKVPYHRREIRAAPHMDNLVSVYK 77 (811)
Q Consensus 10 ~L~eeLtCpIClelL~dPVt-LpCGHtFC~~CL~~~l~~----~~~CP~CR~~~~~~~L~~n~~L~nLVd~lk 77 (811)
.+.--|.|||+.-.+.-|.. ..|.|.-|..-+.-...+ ...||+|.+......+..+..+.+++..+.
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhcc
Confidence 35667999999877766653 578887666544322111 258999999988888888888888877654
No 131
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.17 E-value=62 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.511 Sum_probs=31.0
Q ss_pred ccccCccccccccccee--------ccC---CChhhHHhHHHHhcC---------CCCCCCCCCCC
Q 003547 13 RELKCPICLSLLSSAVS--------LTC---NHVFCNACIVKSMKS---------GSNCPVCKVPY 58 (811)
Q Consensus 13 eeLtCpIClelL~dPVt--------LpC---GHtFC~~CL~~~l~~---------~~~CP~CR~~~ 58 (811)
...+|+.|.+--.+..+ ..| .-.||..||...+.. ...||.||...
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 34578888875444432 235 667999999877653 25799998753
No 132
>PF14353 CpXC: CpXC protein
Probab=23.73 E-value=63 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=27.8
Q ss_pred cccCcccccccccceeccCCChhhHHhHHHHhcCC---CCCCCCCCCCCC
Q 003547 14 ELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG---SNCPVCKVPYHR 60 (811)
Q Consensus 14 eLtCpIClelL~dPVtLpCGHtFC~~CL~~~l~~~---~~CP~CR~~~~~ 60 (811)
+++||-|...+.-.+...-.-..=..-..+.+.+. ..||.|...+..
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 47899998888766654333222223334444432 489999877653
No 133
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=23.38 E-value=38 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=25.8
Q ss_pred cccCccccccccc--ce-eccCC------ChhhHHhHHHHhc
Q 003547 14 ELKCPICLSLLSS--AV-SLTCN------HVFCNACIVKSMK 46 (811)
Q Consensus 14 eLtCpIClelL~d--PV-tLpCG------HtFC~~CL~~~l~ 46 (811)
...|.||++.+.+ -| .++|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999998887 43 34665 6799999999943
No 134
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.23 E-value=56 Score=24.07 Aligned_cols=26 Identities=35% Similarity=0.692 Sum_probs=19.8
Q ss_pred cccccCCCCce---eecCccCCCcceecccc
Q 003547 694 KCCCCGLKGAA---LGCYEKTCRKSFHVPCA 721 (811)
Q Consensus 694 kC~~Cgk~GAs---I~C~~~~C~rsFHvpCA 721 (811)
.|.+|++.... -.| ..|...+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C--~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHC--SECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEe--CCCCCeEcCccC
Confidence 58899887443 467 567799999997
No 135
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=27 Score=38.68 Aligned_cols=35 Identities=31% Similarity=0.703 Sum_probs=30.1
Q ss_pred ccccCcccccccccceeccC----CChhhHHhHHHHhcC
Q 003547 13 RELKCPICLSLLSSAVSLTC----NHVFCNACIVKSMKS 47 (811)
Q Consensus 13 eeLtCpIClelL~dPVtLpC----GHtFC~~CL~~~l~~ 47 (811)
.-|.|.||.+.|.|--...| .|-||.-|-...++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 45999999999999877766 589999999888875
No 136
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=22.98 E-value=9.5 Score=29.54 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=11.3
Q ss_pred cccccccchhhHHhhhhcCCcccCC
Q 003547 592 GVRGSSDIGVLEKLHKTQRGALRKC 616 (811)
Q Consensus 592 ~~~v~~~~~~i~~~~~~~~~~lrpC 616 (811)
.|.||.+||++........|.+++|
T Consensus 11 ~v~VH~~CYGv~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 11 NVAVHQSCYGVSEVPDGDDWLCDRC 35 (36)
T ss_dssp --EEEHHHHT-SS--SS-----HHH
T ss_pred CCcCChhhCCcccCCCCCcEECCcC
Confidence 4689999999965554444555544
No 137
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=21.50 E-value=46 Score=36.42 Aligned_cols=33 Identities=27% Similarity=0.772 Sum_probs=26.5
Q ss_pred HhhcccccccCC--CCceeecCccCC-Ccceeccccc
Q 003547 689 RSRRIKCCCCGL--KGAALGCYEKTC-RKSFHVPCAK 722 (811)
Q Consensus 689 ra~~lkC~~Cgk--~GAsI~C~~~~C-~rsFHvpCA~ 722 (811)
.+..++| ||.+ .|-=|+|....| +.+||++|.-
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVG 253 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECVG 253 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheeccccc
Confidence 5567787 4765 488899999999 5699999984
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=90 Score=34.32 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=36.5
Q ss_pred cccccCcccccccccce----eccCCChhhHHhHHHHhcCCCCCCCCCCCCCCCC
Q 003547 12 GRELKCPICLSLLSSAV----SLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRRE 62 (811)
Q Consensus 12 ~eeLtCpIClelL~dPV----tLpCGHtFC~~CL~~~l~~~~~CP~CR~~~~~~~ 62 (811)
+..+.|||-.-.|..-. ..+|||.|=..-|.+.- ...|++|...+...+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 56789999776655433 34899999887776543 468999999998765
No 139
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=51 Score=36.77 Aligned_cols=31 Identities=23% Similarity=0.910 Sum_probs=22.8
Q ss_pred CCChhhHHhHHHHhcC-------------CCCCCCCCCCCCCCC
Q 003547 32 CNHVFCNACIVKSMKS-------------GSNCPVCKVPYHRRE 62 (811)
Q Consensus 32 CGHtFC~~CL~~~l~~-------------~~~CP~CR~~~~~~~ 62 (811)
|....|..||.+|+.. ...||+||+.+..++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 4456788999888753 258999999876543
Done!