Query 003547
Match_columns 811
No_of_seqs 363 out of 2045
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:11:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003547.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1595-1599//hhsearch_pdb/003547hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2l_A CHIP, carboxy terminus 1.0 1 1 105.2 3.9 70 10-79 204-274 (281)
2 1wgm_A Ubiquitin conjugation f 1.0 1 1 104.5 6.4 76 6-81 14-90 (98)
3 3fl2_A E3 ubiquitin-protein li 1.0 1 1 104.3 5.5 72 7-78 45-118 (124)
4 1z6u_A NP95-like ring finger p 1.0 1 1 104.1 5.3 72 7-78 71-144 (150)
5 1jm7_B BARD1, BRCA1-associated 1.0 1 1 103.3 2.7 75 6-82 14-89 (117)
6 2kre_A Ubiquitin conjugation f 1.0 1 1 102.6 5.5 73 8-80 23-95 (100)
7 3lrq_A E3 ubiquitin-protein li 1.0 1 1 102.5 3.3 76 6-81 14-91 (100)
8 2y43_A E3 ubiquitin-protein li 1.0 1 1 101.9 4.8 77 6-82 14-91 (99)
9 2kr4_A Ubiquitin conjugation f 1.0 1 1 101.5 4.4 73 8-80 8-80 (85)
10 1t1h_A Gspef-atpub14, armadill 1.0 1 1 100.7 4.2 71 9-79 3-74 (78)
No 1
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=105.16 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=62.8
Q ss_pred HCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 104443472320253455041678811199699870189-9998889898788888748899999999831
Q 003547 10 KMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHRREIRAAPHMDNLVSVYKSM 79 (811)
Q Consensus 10 ~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~-~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~ 79 (811)
.+.+.+.||||+++|.+||+++|||+||+.||..||... ..||+||.++....+.+|..+.++++.+...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCHHCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf 99966179273887138859999897779999999987879996978999521086169999999999997
No 2
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=104.53 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=68.2
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0454104443472320253455041678-811199699870189999888989878888874889999999983101
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSLTCN-HVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 6 s~le~L~eeL~CpIClelL~dPVtLpCg-HTFC~~CL~k~l~~~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e~ 81 (811)
..+..+.+++.||||+++|.+||+++|| |+||+.||.+||.....||+||.++....+.+|..+++++..+.....
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred HHHHCCCHHCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCHHHCEECHHHHHHHHHHHHHCC
T ss_conf 44416817538717256424986989899279989999999847989897899885633485999999999999703
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=104.28 Aligned_cols=72 Identities=19% Similarity=0.570 Sum_probs=63.7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 454104443472320253455041678811199699870189-999888989878-888874889999999983
Q 003547 7 HLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHR-REIRAAPHMDNLVSVYKS 78 (811)
Q Consensus 7 ~le~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~-~~CPvCR~~i~~-r~L~~N~~L~nLVd~lk~ 78 (811)
.+..+.+++.|+||+++|.+|++++|||+||..||..|+... ..||+||..+.. ..+.+|..+.++++.+..
T Consensus 45 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 45 FLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred HHHHCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99827538999868957769477228791449999999967809899998658998877878999999999734
No 4
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=104.07 Aligned_cols=72 Identities=22% Similarity=0.577 Sum_probs=64.1
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 454104443472320253455041678811199699870189-9998889898788-88874889999999983
Q 003547 7 HLEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSG-SNCPVCKVPYHRR-EIRAAPHMDNLVSVYKS 78 (811)
Q Consensus 7 ~le~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~-~~CPvCR~~i~~r-~L~~N~~L~nLVd~lk~ 78 (811)
.+..+.+.+.|+||+++|.+|++++|||+||..||..|+... ..||+||..+... .+.+|..+.++++.+..
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred HHHHCCCCCEEECCCHHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78707427990057904259888289990319999999983989599988357887778879899999999766
No 5
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=103.29 Aligned_cols=75 Identities=24% Similarity=0.752 Sum_probs=67.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0454104443472320253455041-6788111996998701899998889898788888748899999999831010
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSL-TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVA 82 (811)
Q Consensus 6 s~le~L~eeL~CpIClelL~dPVtL-pCgHTFC~~CL~k~l~~~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e~~ 82 (811)
..+..+.+++.|+||+++|.+|+++ +|||+||..||..|+. ..||+||..+....+.+|..+.++++.++.....
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~~ 89 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNL 89 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHCCCCCCCCHHHHCCCEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899832127899797927519567599989889999998846--8993999847610165029999999999998898
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=102.59 Aligned_cols=73 Identities=11% Similarity=0.280 Sum_probs=66.2
Q ss_pred HHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5410444347232025345504167881119969987018999988898987888887488999999998310
Q 003547 8 LEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSME 80 (811)
Q Consensus 8 le~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e 80 (811)
...+.+++.||||+++|.+||+++|||+||+.||..||.....||+|+.++....+.+|..+.+++..+....
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred HCCCCHHHCCCCCCCCCCCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCEECHHHHHHHHHHHHHH
T ss_conf 0158076088171572559869999998866999999973898999889888563628799999999999981
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=102.53 Aligned_cols=76 Identities=21% Similarity=0.586 Sum_probs=67.7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEE-CCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 045410444347232025345504-1678811199699870189-999888989878888874889999999983101
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVS-LTCNHVFCNACIVKSMKSG-SNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEV 81 (811)
Q Consensus 6 s~le~L~eeL~CpIClelL~dPVt-LpCgHTFC~~CL~k~l~~~-~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e~ 81 (811)
.....+.+++.|+||+++|.+|+. ++|||+||..||..|+... ..||+||..+....+..+..+.++++.+..+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 553458878899628923008666589998422999999997784989888884899995763888999999999999
No 8
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=101.88 Aligned_cols=77 Identities=23% Similarity=0.585 Sum_probs=69.0
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0454104443472320253455041-6788111996998701899998889898788888748899999999831010
Q 003547 6 SHLEKMGRELKCPICLSLLSSAVSL-TCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSMEVA 82 (811)
Q Consensus 6 s~le~L~eeL~CpIClelL~dPVtL-pCgHTFC~~CL~k~l~~~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e~~ 82 (811)
..++.+.+++.|+||++.|.+|+.+ +|||+||..||..|+.....||+||..+....+.+|..+.++++.++.....
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp GGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 178748899996519966588387889998724999999998789897989868733078279999999999998788
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=101.52 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=66.4
Q ss_pred HHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5410444347232025345504167881119969987018999988898987888887488999999998310
Q 003547 8 LEKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKSGSNCPVCKVPYHRREIRAAPHMDNLVSVYKSME 80 (811)
Q Consensus 8 le~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~e 80 (811)
+..+.+++.||||+++|.+||+++|||+||+.||..||.....||+|+..+....+.+|..++++++.+....
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HHCCCHHEECCCCCCHHCCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 6369442098161866038869999999998999999954898989869988574512999999999999971
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=100.67 Aligned_cols=71 Identities=15% Similarity=0.377 Sum_probs=64.2
Q ss_pred HHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 410444347232025345504167881119969987018-99998889898788888748899999999831
Q 003547 9 EKMGRELKCPICLSLLSSAVSLTCNHVFCNACIVKSMKS-GSNCPVCKVPYHRREIRAAPHMDNLVSVYKSM 79 (811)
Q Consensus 9 e~L~eeL~CpIClelL~dPVtLpCgHTFC~~CL~k~l~~-~~~CPvCR~~i~~r~L~~N~~L~nLVd~lk~~ 79 (811)
..+.+++.|+||+++|.+|+.++|||+||+.||.+|+.. ...||+||..+....+.+|..+.++++.+...
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 677533788796651369777488781539999999997839899996988743074089999999999998
Done!