Query 003548
Match_columns 811
No_of_seqs 1391 out of 3086
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 01:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2076 RNA polymerase III tra 100.0 8.5E-93 1.8E-97 742.0 69.8 739 12-811 117-895 (895)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-45 2.8E-50 444.9 69.6 638 34-809 261-898 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-44 8.7E-49 431.9 71.2 649 31-809 122-797 (899)
4 PRK11447 cellulose synthase su 100.0 1E-39 2.2E-44 392.1 66.7 657 31-809 25-738 (1157)
5 KOG4626 O-linked N-acetylgluco 100.0 3.7E-41 8E-46 337.7 36.7 509 35-674 49-565 (966)
6 KOG4626 O-linked N-acetylgluco 100.0 1.9E-41 4.1E-46 339.7 27.4 377 30-426 112-488 (966)
7 KOG2002 TPR-containing nuclear 100.0 4.6E-37 9.9E-42 325.3 51.3 608 50-807 110-741 (1018)
8 PRK11447 cellulose synthase su 100.0 1.3E-36 2.8E-41 365.3 62.2 617 33-751 61-739 (1157)
9 PRK09782 bacteriophage N4 rece 100.0 3.6E-33 7.7E-38 319.0 62.9 622 33-755 43-709 (987)
10 KOG2002 TPR-containing nuclear 100.0 2.9E-32 6.2E-37 289.1 53.3 596 37-738 131-765 (1018)
11 TIGR00990 3a0801s09 mitochondr 100.0 3.3E-32 7.2E-37 307.7 43.9 369 35-424 128-572 (615)
12 PRK09782 bacteriophage N4 rece 100.0 8E-30 1.7E-34 291.6 57.0 597 34-755 78-743 (987)
13 TIGR00990 3a0801s09 mitochondr 100.0 5.5E-29 1.2E-33 281.5 50.1 336 68-423 127-496 (615)
14 PRK15174 Vi polysaccharide exp 100.0 1.6E-29 3.4E-34 284.2 44.2 340 35-382 43-386 (656)
15 PRK15174 Vi polysaccharide exp 100.0 4.5E-28 9.8E-33 272.4 39.6 341 66-426 40-384 (656)
16 KOG0547 Translocase of outer m 100.0 3.5E-28 7.7E-33 238.9 31.4 339 34-380 115-569 (606)
17 PRK10049 pgaA outer membrane p 100.0 6.5E-27 1.4E-31 269.0 45.5 369 42-428 23-461 (765)
18 PRK10049 pgaA outer membrane p 100.0 3.6E-26 7.9E-31 262.9 44.1 441 54-612 2-466 (765)
19 PLN03077 Protein ECB2; Provisi 100.0 5.6E-24 1.2E-28 250.7 57.5 361 33-421 50-482 (857)
20 PRK14574 hmsH outer membrane p 99.9 1.2E-23 2.6E-28 236.2 48.5 388 30-424 30-446 (822)
21 PLN03077 Protein ECB2; Provisi 99.9 3.3E-23 7.2E-28 244.1 54.9 620 65-808 48-683 (857)
22 KOG2076 RNA polymerase III tra 99.9 9.9E-23 2.1E-27 215.9 51.8 338 69-421 140-510 (895)
23 PLN03081 pentatricopeptide (PP 99.9 9.3E-24 2E-28 242.7 44.8 465 70-640 89-557 (697)
24 KOG0547 Translocase of outer m 99.9 6.7E-25 1.5E-29 216.0 28.8 334 69-422 116-565 (606)
25 KOG1126 DNA-binding cell divis 99.9 5.8E-25 1.3E-29 226.0 25.9 308 34-349 319-626 (638)
26 PLN03218 maturation of RBCL 1; 99.9 2.2E-21 4.7E-26 224.2 57.4 374 37-426 373-751 (1060)
27 PLN03218 maturation of RBCL 1; 99.9 4.7E-21 1E-25 221.4 57.2 369 42-427 414-787 (1060)
28 KOG0495 HAT repeat protein [RN 99.9 4.3E-20 9.3E-25 188.2 55.2 607 48-808 265-877 (913)
29 PRK11788 tetratricopeptide rep 99.9 6.4E-23 1.4E-27 220.8 36.8 303 31-375 32-345 (389)
30 PRK11788 tetratricopeptide rep 99.9 5.5E-23 1.2E-27 221.4 36.1 276 69-382 36-316 (389)
31 KOG0624 dsRNA-activated protei 99.9 7.7E-23 1.7E-27 192.5 30.6 323 30-382 34-375 (504)
32 PLN03081 pentatricopeptide (PP 99.9 1.2E-21 2.6E-26 225.3 47.4 466 102-674 87-557 (697)
33 KOG1126 DNA-binding cell divis 99.9 1.3E-23 2.9E-28 216.1 25.5 305 69-381 318-624 (638)
34 KOG1155 Anaphase-promoting com 99.9 9.2E-22 2E-26 192.9 36.7 380 33-432 163-545 (559)
35 KOG0495 HAT repeat protein [RN 99.9 8.6E-19 1.9E-23 178.8 57.4 596 31-756 282-884 (913)
36 KOG0548 Molecular co-chaperone 99.9 3.7E-22 8E-27 200.4 32.3 344 36-383 4-461 (539)
37 PRK14574 hmsH outer membrane p 99.9 3E-21 6.5E-26 217.0 43.0 374 39-428 73-518 (822)
38 KOG1155 Anaphase-promoting com 99.9 1.5E-20 3.3E-25 184.5 36.7 331 67-424 163-496 (559)
39 KOG2003 TPR repeat-containing 99.9 9.4E-21 2E-25 184.7 31.8 464 30-622 197-709 (840)
40 KOG4162 Predicted calmodulin-b 99.9 3.1E-18 6.8E-23 179.0 47.6 416 208-756 325-787 (799)
41 KOG1156 N-terminal acetyltrans 99.9 3.3E-18 7.2E-23 175.3 44.7 380 30-431 3-442 (700)
42 KOG1127 TPR repeat-containing 99.9 3.3E-18 7.1E-23 182.5 46.2 638 47-726 471-1231(1238)
43 KOG2003 TPR repeat-containing 99.9 5.9E-21 1.3E-25 186.0 23.6 266 141-426 424-692 (840)
44 KOG1173 Anaphase-promoting com 99.9 5E-20 1.1E-24 185.7 30.9 295 29-358 239-533 (611)
45 KOG1127 TPR repeat-containing 99.9 1.9E-18 4.1E-23 184.3 44.0 219 81-305 471-697 (1238)
46 KOG1173 Anaphase-promoting com 99.9 6.6E-20 1.4E-24 184.8 30.0 343 33-382 140-523 (611)
47 KOG0624 dsRNA-activated protei 99.9 4.2E-20 9.1E-25 174.2 24.2 365 64-479 34-417 (504)
48 PF13429 TPR_15: Tetratricopep 99.9 1.7E-21 3.7E-26 198.1 13.6 263 106-376 12-276 (280)
49 KOG0548 Molecular co-chaperone 99.9 4.6E-19 9.9E-24 178.4 29.9 340 71-427 5-459 (539)
50 TIGR00540 hemY_coli hemY prote 99.9 3E-18 6.6E-23 183.2 37.2 298 37-341 87-397 (409)
51 KOG4162 Predicted calmodulin-b 99.9 3.4E-18 7.3E-23 178.8 35.8 364 41-422 330-782 (799)
52 PF13429 TPR_15: Tetratricopep 99.8 6.3E-21 1.4E-25 194.0 13.8 259 39-341 13-275 (280)
53 TIGR00540 hemY_coli hemY prote 99.8 1.5E-18 3.3E-23 185.5 32.5 306 69-376 85-398 (409)
54 PRK12370 invasion protein regu 99.8 1E-18 2.2E-23 193.9 32.3 272 63-344 251-536 (553)
55 KOG1174 Anaphase-promoting com 99.8 1.2E-17 2.6E-22 161.7 32.9 299 109-428 205-505 (564)
56 KOG1129 TPR repeat-containing 99.8 2.1E-19 4.5E-24 168.5 19.9 273 76-356 187-471 (478)
57 KOG1129 TPR repeat-containing 99.8 7.6E-19 1.7E-23 164.7 23.6 338 38-383 8-464 (478)
58 PRK12370 invasion protein regu 99.8 5.1E-18 1.1E-22 188.4 32.6 243 50-301 277-529 (553)
59 PRK10747 putative protoheme IX 99.8 3.1E-17 6.8E-22 174.3 36.3 293 37-376 87-389 (398)
60 KOG1174 Anaphase-promoting com 99.8 1.9E-17 4.1E-22 160.3 31.0 310 40-358 204-515 (564)
61 PRK10747 putative protoheme IX 99.8 1.5E-17 3.4E-22 176.7 32.4 273 71-382 87-362 (398)
62 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-17 2.5E-22 169.8 27.9 238 47-291 39-283 (296)
63 KOG1125 TPR repeat-containing 99.8 3E-18 6.5E-23 174.0 20.0 257 37-299 288-562 (579)
64 COG3063 PilF Tfp pilus assembl 99.8 3.8E-17 8.2E-22 147.1 24.6 205 31-237 32-238 (250)
65 KOG1915 Cell cycle control pro 99.8 4.7E-14 1E-18 139.4 45.9 471 56-617 61-550 (677)
66 TIGR02521 type_IV_pilW type IV 99.8 1.3E-16 2.8E-21 158.7 27.8 204 30-235 27-232 (234)
67 COG3063 PilF Tfp pilus assembl 99.8 1.7E-16 3.7E-21 143.0 25.1 210 137-352 36-245 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.8 9.2E-17 2E-21 163.3 26.2 243 81-363 39-286 (296)
69 KOG1156 N-terminal acetyltrans 99.8 1.8E-15 3.8E-20 155.6 33.6 381 29-421 36-509 (700)
70 KOG1125 TPR repeat-containing 99.8 7.2E-17 1.6E-21 164.1 22.9 263 105-371 288-565 (579)
71 KOG3785 Uncharacterized conser 99.8 1.1E-15 2.4E-20 145.2 28.6 360 44-420 32-454 (557)
72 COG2956 Predicted N-acetylgluc 99.8 4.9E-15 1.1E-19 139.7 32.5 267 37-312 38-314 (389)
73 KOG2376 Signal recognition par 99.8 4.6E-14 9.9E-19 143.8 40.6 368 34-421 12-403 (652)
74 TIGR02521 type_IV_pilW type IV 99.8 5.3E-16 1.1E-20 154.2 26.7 199 67-271 30-230 (234)
75 KOG0550 Molecular chaperone (D 99.7 9.8E-17 2.1E-21 155.9 19.6 286 32-346 47-353 (486)
76 COG2956 Predicted N-acetylgluc 99.7 1.8E-14 3.9E-19 135.9 31.1 270 72-348 39-316 (389)
77 cd05804 StaR_like StaR_like; a 99.7 1E-14 2.2E-19 154.8 33.3 312 64-378 2-337 (355)
78 PLN02789 farnesyltranstransfer 99.7 1.5E-14 3.3E-19 146.0 31.0 222 29-256 31-267 (320)
79 KOG1840 Kinesin light chain [C 99.7 4.2E-15 9.2E-20 156.2 26.6 249 167-422 196-478 (508)
80 cd05804 StaR_like StaR_like; a 99.7 6.7E-14 1.5E-18 148.6 34.2 311 31-344 3-337 (355)
81 KOG1840 Kinesin light chain [C 99.7 2.1E-14 4.5E-19 151.1 27.8 244 99-342 196-478 (508)
82 KOG1915 Cell cycle control pro 99.7 2.8E-12 6.1E-17 127.1 40.7 533 91-750 62-626 (677)
83 PLN02789 farnesyltranstransfer 99.7 2.3E-14 4.9E-19 144.7 26.8 221 47-291 33-267 (320)
84 KOG3785 Uncharacterized conser 99.7 5.8E-14 1.3E-18 133.7 26.2 364 37-421 60-488 (557)
85 KOG0550 Molecular chaperone (D 99.7 4.1E-15 8.9E-20 144.8 18.4 288 69-380 50-353 (486)
86 KOG2047 mRNA splicing factor [ 99.7 4E-11 8.7E-16 123.5 47.0 577 52-806 44-682 (835)
87 TIGR03302 OM_YfiO outer membra 99.6 5.7E-14 1.2E-18 139.1 22.0 190 29-235 28-232 (235)
88 PF12569 NARP1: NMDA receptor- 99.6 7.7E-13 1.7E-17 141.4 31.3 141 278-424 193-335 (517)
89 PF12569 NARP1: NMDA receptor- 99.6 8E-12 1.7E-16 133.6 37.5 266 35-306 5-332 (517)
90 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.3E-16 120.4 35.1 293 37-341 87-388 (400)
91 KOG2376 Signal recognition par 99.6 8.3E-11 1.8E-15 120.4 39.5 379 31-423 43-446 (652)
92 COG3071 HemY Uncharacterized e 99.6 1.4E-11 3E-16 120.7 32.5 299 71-376 87-389 (400)
93 TIGR03302 OM_YfiO outer membra 99.6 3.9E-13 8.5E-18 133.1 22.3 192 64-275 29-234 (235)
94 PRK15359 type III secretion sy 99.6 7.7E-14 1.7E-18 124.7 15.4 125 55-182 14-138 (144)
95 KOG4340 Uncharacterized conser 99.5 3.5E-11 7.5E-16 112.4 28.9 313 44-373 20-335 (459)
96 PRK10370 formate-dependent nit 99.5 2.4E-12 5.2E-17 121.5 20.6 155 40-205 22-179 (198)
97 PRK15359 type III secretion sy 99.5 5.2E-13 1.1E-17 119.3 15.0 126 88-218 13-138 (144)
98 PRK10370 formate-dependent nit 99.5 2E-12 4.3E-17 122.1 17.7 126 47-172 52-180 (198)
99 KOG4340 Uncharacterized conser 99.5 2.5E-11 5.4E-16 113.4 24.3 370 31-423 41-443 (459)
100 KOG2047 mRNA splicing factor [ 99.5 6.5E-09 1.4E-13 107.6 43.7 370 41-424 109-580 (835)
101 PRK14720 transcript cleavage f 99.5 1.1E-11 2.3E-16 138.3 25.7 227 29-290 26-268 (906)
102 COG5010 TadD Flp pilus assembl 99.5 8.4E-12 1.8E-16 115.9 20.7 179 51-232 50-228 (257)
103 KOG1130 Predicted G-alpha GTPa 99.5 2.7E-12 5.9E-17 124.9 17.8 319 34-366 17-373 (639)
104 COG5010 TadD Flp pilus assembl 99.5 1.5E-11 3.2E-16 114.3 21.1 182 83-271 48-229 (257)
105 PRK04841 transcriptional regul 99.5 2.2E-10 4.7E-15 137.7 37.7 385 33-424 339-761 (903)
106 PRK14720 transcript cleavage f 99.4 2.8E-11 6E-16 135.0 25.3 243 62-359 25-268 (906)
107 KOG3060 Uncharacterized conser 99.4 1.2E-10 2.6E-15 106.9 23.9 197 48-250 26-231 (289)
108 KOG3060 Uncharacterized conser 99.4 6.9E-11 1.5E-15 108.4 21.8 176 29-204 46-225 (289)
109 PRK04841 transcriptional regul 99.4 6.1E-10 1.3E-14 133.9 36.8 344 37-381 377-764 (903)
110 PRK15179 Vi polysaccharide bio 99.4 4.9E-11 1.1E-15 132.6 24.4 141 62-202 80-220 (694)
111 PRK15179 Vi polysaccharide bio 99.4 3.1E-11 6.6E-16 134.2 21.9 196 29-238 25-220 (694)
112 TIGR02552 LcrH_SycD type III s 99.4 1.3E-11 2.8E-16 110.4 15.5 116 56-171 5-120 (135)
113 KOG0553 TPR repeat-containing 99.4 1.2E-11 2.6E-16 117.0 14.1 121 33-153 80-200 (304)
114 TIGR02552 LcrH_SycD type III s 99.3 4.3E-11 9.2E-16 107.0 16.5 117 89-205 4-120 (135)
115 KOG1128 Uncharacterized conser 99.3 4.1E-11 8.8E-16 125.8 18.4 225 27-272 391-615 (777)
116 KOG1130 Predicted G-alpha GTPa 99.3 1.2E-11 2.7E-16 120.4 13.1 288 75-378 24-345 (639)
117 COG4783 Putative Zn-dependent 99.3 7.6E-10 1.7E-14 111.7 24.9 154 65-237 303-456 (484)
118 PRK15363 pathogenicity island 99.3 9.3E-11 2E-15 101.9 14.7 102 65-166 32-133 (157)
119 KOG1128 Uncharacterized conser 99.3 2.4E-09 5.2E-14 112.8 27.7 294 65-380 395-704 (777)
120 PRK15363 pathogenicity island 99.3 1.7E-10 3.8E-15 100.2 15.6 113 94-206 26-139 (157)
121 PF04733 Coatomer_E: Coatomer 99.2 2.5E-10 5.4E-15 114.2 15.6 255 41-314 8-270 (290)
122 KOG0553 TPR repeat-containing 99.2 1.8E-10 3.8E-15 109.3 13.5 107 73-179 86-192 (304)
123 PF04733 Coatomer_E: Coatomer 99.2 1.9E-10 4.1E-15 115.0 14.2 258 76-350 9-272 (290)
124 COG4783 Putative Zn-dependent 99.2 8.2E-09 1.8E-13 104.4 25.0 153 99-274 303-455 (484)
125 PLN03088 SGT1, suppressor of 99.2 4.1E-10 8.8E-15 117.2 16.2 114 36-149 4-117 (356)
126 PRK10866 outer membrane biogen 99.1 9.5E-09 2.1E-13 100.3 22.3 183 33-232 31-238 (243)
127 PF13525 YfiO: Outer membrane 99.1 7.8E-09 1.7E-13 98.7 19.4 174 33-223 4-195 (203)
128 COG4235 Cytochrome c biogenesi 99.1 3.8E-09 8.2E-14 101.3 15.9 124 83-206 137-263 (287)
129 PRK10866 outer membrane biogen 99.1 3.8E-08 8.3E-13 96.1 23.1 182 67-271 31-239 (243)
130 PLN03088 SGT1, suppressor of 99.1 2.9E-09 6.2E-14 110.9 16.2 113 71-183 5-117 (356)
131 KOG3617 WD40 and TPR repeat-co 99.0 3.3E-07 7.1E-12 97.6 28.7 345 42-421 736-1172(1416)
132 COG4235 Cytochrome c biogenesi 99.0 1.6E-08 3.6E-13 97.0 17.3 134 118-253 138-274 (287)
133 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.8E-09 1.5E-13 90.4 13.7 103 36-138 4-112 (119)
134 PF13525 YfiO: Outer membrane 99.0 3.3E-08 7.2E-13 94.4 19.1 179 67-265 4-199 (203)
135 PF09976 TPR_21: Tetratricopep 99.0 2.3E-08 5E-13 89.9 16.9 129 34-163 11-145 (145)
136 KOG2053 Mitochondrial inherita 99.0 0.00013 2.7E-09 79.9 49.3 230 42-275 17-257 (932)
137 KOG1941 Acetylcholine receptor 99.0 3E-07 6.5E-12 89.0 24.2 237 137-373 84-356 (518)
138 PF14938 SNAP: Soluble NSF att 99.0 6.2E-08 1.3E-12 98.0 20.8 203 75-306 42-264 (282)
139 PRK10153 DNA-binding transcrip 99.0 2.8E-08 6.2E-13 107.6 19.3 143 62-205 331-488 (517)
140 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.5E-08 3.2E-13 88.3 14.2 104 69-172 3-112 (119)
141 KOG2053 Mitochondrial inherita 98.9 4.9E-05 1.1E-09 83.0 41.0 237 80-347 21-259 (932)
142 CHL00033 ycf3 photosystem I as 98.9 3E-08 6.4E-13 92.0 15.0 107 44-150 9-120 (168)
143 KOG3081 Vesicle coat complex C 98.9 5.5E-07 1.2E-11 83.9 22.5 253 112-381 18-275 (299)
144 PRK11906 transcriptional regul 98.9 1.1E-07 2.5E-12 97.0 19.9 134 36-169 257-405 (458)
145 KOG4648 Uncharacterized conser 98.9 1.6E-09 3.5E-14 103.4 6.1 107 38-144 101-207 (536)
146 COG4785 NlpI Lipoprotein NlpI, 98.9 8.8E-08 1.9E-12 85.9 16.6 126 67-193 64-189 (297)
147 COG4785 NlpI Lipoprotein NlpI, 98.9 2.1E-07 4.6E-12 83.5 18.5 195 103-308 66-266 (297)
148 PF13414 TPR_11: TPR repeat; P 98.9 7.2E-09 1.6E-13 79.7 7.6 66 68-133 3-69 (69)
149 cd00189 TPR Tetratricopeptide 98.9 2.3E-08 5E-13 83.0 11.5 92 73-164 5-96 (100)
150 KOG1941 Acetylcholine receptor 98.9 7.2E-07 1.6E-11 86.4 22.5 309 35-343 7-360 (518)
151 PRK02603 photosystem I assembl 98.9 8.7E-08 1.9E-12 89.2 16.2 118 66-203 33-153 (172)
152 PRK11906 transcriptional regul 98.9 3E-07 6.5E-12 94.1 21.0 172 60-232 240-433 (458)
153 KOG3617 WD40 and TPR repeat-co 98.9 6.1E-05 1.3E-09 80.9 38.3 230 78-341 738-994 (1416)
154 PF13432 TPR_16: Tetratricopep 98.9 8E-09 1.7E-13 78.3 7.4 64 39-102 2-65 (65)
155 PRK15331 chaperone protein Sic 98.9 4.6E-08 9.9E-13 85.6 12.9 97 34-130 37-133 (165)
156 cd00189 TPR Tetratricopeptide 98.9 3.1E-08 6.7E-13 82.2 11.7 99 36-134 2-100 (100)
157 PRK10153 DNA-binding transcrip 98.8 2.2E-07 4.7E-12 100.8 20.5 144 27-171 332-488 (517)
158 KOG1070 rRNA processing protei 98.8 1.8E-06 3.8E-11 97.7 27.6 218 85-308 1441-1663(1710)
159 PRK15331 chaperone protein Sic 98.8 5.6E-08 1.2E-12 85.0 12.7 110 60-170 29-138 (165)
160 KOG3081 Vesicle coat complex C 98.8 1.4E-06 3.1E-11 81.2 22.1 256 41-314 15-276 (299)
161 PF09976 TPR_21: Tetratricopep 98.8 1.9E-07 4.1E-12 84.0 16.4 115 81-196 24-144 (145)
162 COG3898 Uncharacterized membra 98.8 7.7E-06 1.7E-10 80.4 28.0 292 36-343 86-392 (531)
163 PF14938 SNAP: Soluble NSF att 98.8 4.1E-07 8.8E-12 92.0 20.5 202 177-379 42-268 (282)
164 PRK02603 photosystem I assembl 98.8 1.2E-07 2.7E-12 88.2 15.4 120 30-169 31-153 (172)
165 PF12895 Apc3: Anaphase-promot 98.8 1.1E-08 2.3E-13 82.1 7.2 81 47-128 2-84 (84)
166 PF13414 TPR_11: TPR repeat; P 98.8 1.9E-08 4.1E-13 77.3 8.2 67 101-167 2-69 (69)
167 PRK10803 tol-pal system protei 98.8 1.1E-07 2.3E-12 93.4 15.4 106 33-138 141-253 (263)
168 KOG1070 rRNA processing protei 98.8 9.3E-07 2E-11 99.8 24.0 222 152-380 1440-1666(1710)
169 CHL00033 ycf3 photosystem I as 98.8 1.1E-07 2.3E-12 88.3 14.2 123 82-204 13-154 (168)
170 KOG0543 FKBP-type peptidyl-pro 98.8 1.6E-07 3.4E-12 93.6 15.7 99 103-201 258-357 (397)
171 KOG2471 TPR repeat-containing 98.8 1.2E-06 2.6E-11 88.2 21.3 339 36-376 208-683 (696)
172 PF13432 TPR_16: Tetratricopep 98.8 3E-08 6.6E-13 75.1 7.9 63 73-135 2-64 (65)
173 PF12895 Apc3: Anaphase-promot 98.7 2.9E-08 6.3E-13 79.6 7.1 79 116-195 3-83 (84)
174 COG0457 NrfG FOG: TPR repeat [ 98.7 2.9E-05 6.3E-10 77.3 30.8 223 47-275 36-267 (291)
175 KOG0543 FKBP-type peptidyl-pro 98.7 2.3E-07 4.9E-12 92.5 14.3 81 70-150 259-339 (397)
176 COG0457 NrfG FOG: TPR repeat [ 98.7 7.9E-05 1.7E-09 74.0 33.2 221 81-306 36-263 (291)
177 COG4105 ComL DNA uptake lipopr 98.7 5.1E-06 1.1E-10 78.3 21.5 160 33-192 33-226 (254)
178 KOG2300 Uncharacterized conser 98.7 0.00061 1.3E-08 69.3 43.3 387 33-424 6-475 (629)
179 PRK10803 tol-pal system protei 98.7 6.4E-07 1.4E-11 88.0 16.4 103 102-204 142-251 (263)
180 KOG1914 mRNA cleavage and poly 98.7 0.00017 3.6E-09 74.4 33.1 378 29-421 15-499 (656)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.2E-07 1.1E-11 93.2 15.8 120 74-196 175-294 (395)
182 COG3898 Uncharacterized membra 98.7 0.00027 5.9E-09 69.8 32.7 292 74-377 90-392 (531)
183 KOG4234 TPR repeat-containing 98.6 6.1E-07 1.3E-11 79.6 12.9 107 73-179 100-211 (271)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.1E-07 2E-11 91.5 16.2 124 105-233 172-295 (395)
185 PF14559 TPR_19: Tetratricopep 98.6 1.1E-07 2.5E-12 72.7 7.2 66 45-110 2-67 (68)
186 COG1729 Uncharacterized protei 98.6 1E-06 2.2E-11 83.8 14.7 108 35-142 142-255 (262)
187 KOG2796 Uncharacterized conser 98.6 1.5E-05 3.2E-10 74.2 21.2 203 174-404 126-333 (366)
188 PF12688 TPR_5: Tetratrico pep 98.6 1.5E-06 3.2E-11 73.6 13.7 95 69-163 2-102 (120)
189 KOG3616 Selective LIM binding 98.6 0.0015 3.3E-08 69.7 37.0 139 251-421 713-851 (1636)
190 KOG3616 Selective LIM binding 98.6 0.00058 1.3E-08 72.7 33.8 287 105-426 664-1027(1636)
191 KOG4648 Uncharacterized conser 98.5 5E-08 1.1E-12 93.4 3.0 101 105-205 100-200 (536)
192 COG4700 Uncharacterized protei 98.5 6.4E-06 1.4E-10 72.4 15.4 134 278-424 88-223 (251)
193 COG4700 Uncharacterized protei 98.5 1.7E-05 3.6E-10 69.8 17.9 97 139-235 92-189 (251)
194 PF14559 TPR_19: Tetratricopep 98.5 3.8E-07 8.2E-12 69.8 6.9 61 115-175 4-64 (68)
195 PF13512 TPR_18: Tetratricopep 98.5 4.3E-06 9.3E-11 71.8 13.7 85 33-117 9-99 (142)
196 PF12688 TPR_5: Tetratrico pep 98.5 4.7E-06 1E-10 70.6 13.5 95 103-197 2-102 (120)
197 COG1729 Uncharacterized protei 98.5 4.8E-06 1E-10 79.4 14.8 100 105-204 144-249 (262)
198 KOG2300 Uncharacterized conser 98.5 0.0027 5.8E-08 64.9 38.0 372 32-409 44-540 (629)
199 PF13371 TPR_9: Tetratricopept 98.4 1.3E-06 2.8E-11 68.0 8.7 62 111-172 4-65 (73)
200 PF13371 TPR_9: Tetratricopept 98.4 1.1E-06 2.4E-11 68.3 8.3 63 43-105 4-66 (73)
201 PF06552 TOM20_plant: Plant sp 98.4 2.5E-06 5.5E-11 75.4 10.1 96 661-756 7-113 (186)
202 COG4105 ComL DNA uptake lipopr 98.4 0.00022 4.7E-09 67.6 23.0 179 102-303 34-228 (254)
203 KOG4234 TPR repeat-containing 98.3 6.9E-06 1.5E-10 73.1 11.7 95 109-203 102-201 (271)
204 PF13512 TPR_18: Tetratricopep 98.3 2.1E-05 4.6E-10 67.5 14.1 102 103-204 11-133 (142)
205 KOG4507 Uncharacterized conser 98.3 3.9E-05 8.4E-10 79.3 17.7 107 252-359 615-721 (886)
206 KOG0985 Vesicle coat protein c 98.3 0.00057 1.2E-08 75.5 26.8 281 41-371 1055-1335(1666)
207 KOG1586 Protein required for f 98.3 0.00033 7.2E-09 64.4 21.2 187 29-216 29-241 (288)
208 KOG1914 mRNA cleavage and poly 98.3 0.0038 8.2E-08 64.8 30.5 353 58-425 10-466 (656)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.8E-05 4E-10 81.2 13.6 69 63-131 70-141 (453)
210 KOG4642 Chaperone-dependent E3 98.2 1.5E-05 3.3E-10 73.2 11.4 104 28-131 4-107 (284)
211 KOG2471 TPR repeat-containing 98.2 7.1E-05 1.5E-09 75.9 16.4 319 31-360 14-381 (696)
212 KOG4555 TPR repeat-containing 98.2 9.6E-05 2.1E-09 61.0 14.0 98 36-133 45-146 (175)
213 KOG2796 Uncharacterized conser 98.1 0.00031 6.8E-09 65.6 18.4 135 70-204 179-320 (366)
214 KOG1258 mRNA processing protei 98.1 0.019 4.1E-07 61.0 36.3 364 51-424 62-471 (577)
215 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 7E-05 1.5E-09 77.0 14.9 69 97-165 70-141 (453)
216 COG3118 Thioredoxin domain-con 98.1 0.00031 6.6E-09 67.6 17.8 163 30-193 130-295 (304)
217 KOG2610 Uncharacterized conser 98.1 0.0011 2.4E-08 64.3 20.7 157 75-231 110-272 (491)
218 PF00515 TPR_1: Tetratricopept 98.0 5.6E-06 1.2E-10 52.8 3.3 32 724-755 2-33 (34)
219 PF06552 TOM20_plant: Plant sp 98.0 6.6E-05 1.4E-09 66.6 10.3 53 119-171 52-115 (186)
220 KOG4555 TPR repeat-containing 98.0 0.00025 5.4E-09 58.6 12.6 96 140-235 47-144 (175)
221 PF13428 TPR_14: Tetratricopep 97.9 2E-05 4.4E-10 53.6 5.3 43 314-356 1-43 (44)
222 PF13424 TPR_12: Tetratricopep 97.9 9.4E-06 2E-10 64.0 4.0 63 68-130 5-74 (78)
223 PF13424 TPR_12: Tetratricopep 97.9 2.2E-05 4.8E-10 61.8 6.0 67 278-344 4-76 (78)
224 KOG1585 Protein required for f 97.9 0.0058 1.3E-07 56.9 21.8 196 177-373 38-252 (308)
225 PF04184 ST7: ST7 protein; In 97.9 0.0011 2.4E-08 68.3 19.1 196 140-352 172-384 (539)
226 PF05843 Suf: Suppressor of fo 97.9 0.00024 5.3E-09 71.5 14.5 134 104-237 3-138 (280)
227 PF05843 Suf: Suppressor of fo 97.9 0.00032 6.8E-09 70.7 14.3 133 70-202 3-139 (280)
228 PF13428 TPR_14: Tetratricopep 97.8 3.7E-05 8.1E-10 52.3 5.1 40 70-109 3-42 (44)
229 KOG1585 Protein required for f 97.8 0.0027 5.9E-08 59.0 18.3 125 71-195 34-175 (308)
230 KOG1586 Protein required for f 97.8 0.013 2.9E-07 54.2 22.6 103 47-164 27-142 (288)
231 KOG2041 WD40 repeat protein [G 97.8 0.073 1.6E-06 57.2 30.9 249 84-374 679-936 (1189)
232 PF10345 Cohesin_load: Cohesin 97.8 0.022 4.7E-07 64.7 29.9 138 649-800 305-467 (608)
233 PF10300 DUF3808: Protein of u 97.8 0.017 3.7E-07 62.8 27.6 180 192-379 179-378 (468)
234 KOG1550 Extracellular protein 97.8 0.01 2.3E-07 66.0 26.3 279 49-345 227-540 (552)
235 KOG0985 Vesicle coat protein c 97.8 0.0073 1.6E-07 67.2 23.8 305 43-406 993-1325(1666)
236 PF04184 ST7: ST7 protein; In 97.8 0.0065 1.4E-07 62.9 21.9 147 73-232 173-321 (539)
237 KOG2610 Uncharacterized conser 97.8 0.002 4.4E-08 62.5 17.1 162 251-421 110-274 (491)
238 PF13431 TPR_17: Tetratricopep 97.7 3.7E-05 8.1E-10 48.5 3.5 34 336-369 1-34 (34)
239 KOG4507 Uncharacterized conser 97.7 0.0043 9.3E-08 64.8 20.1 95 652-756 614-709 (886)
240 KOG0376 Serine-threonine phosp 97.7 5E-05 1.1E-09 77.7 6.3 108 38-145 8-115 (476)
241 KOG4642 Chaperone-dependent E3 97.7 0.00032 6.9E-09 64.7 10.7 92 108-199 16-107 (284)
242 KOG1258 mRNA processing protei 97.7 0.098 2.1E-06 55.9 36.0 316 84-424 61-396 (577)
243 PF07719 TPR_2: Tetratricopept 97.7 4.1E-05 8.9E-10 48.8 3.7 33 723-755 1-33 (34)
244 COG2909 MalT ATP-dependent tra 97.7 0.12 2.5E-06 57.8 31.4 302 68-378 347-689 (894)
245 COG3118 Thioredoxin domain-con 97.7 0.0036 7.9E-08 60.5 17.3 152 69-221 135-287 (304)
246 PF13181 TPR_8: Tetratricopept 97.6 6.5E-05 1.4E-09 47.8 3.7 32 724-755 2-33 (34)
247 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.089 1.9E-06 53.7 26.9 375 27-420 35-528 (660)
248 PF13281 DUF4071: Domain of un 97.6 0.023 5E-07 58.3 23.3 170 103-275 142-336 (374)
249 KOG1550 Extracellular protein 97.6 0.025 5.4E-07 63.0 25.6 277 84-380 228-541 (552)
250 KOG0545 Aryl-hydrocarbon recep 97.6 0.0013 2.8E-08 61.0 12.5 114 33-170 177-298 (329)
251 PF13431 TPR_17: Tetratricopep 97.6 8E-05 1.7E-09 47.0 3.1 32 57-88 2-33 (34)
252 PF02259 FAT: FAT domain; Int 97.5 0.033 7.1E-07 58.9 25.0 272 41-326 5-304 (352)
253 PF10345 Cohesin_load: Cohesin 97.5 0.31 6.6E-06 55.5 39.2 313 50-363 37-464 (608)
254 KOG0530 Protein farnesyltransf 97.4 0.054 1.2E-06 51.3 20.9 187 30-218 38-233 (318)
255 KOG0890 Protein kinase of the 97.4 0.19 4.2E-06 62.1 30.7 330 39-381 1388-1788(2382)
256 PF00515 TPR_1: Tetratricopept 97.4 0.00028 6E-09 44.9 4.3 34 314-347 1-34 (34)
257 KOG0376 Serine-threonine phosp 97.4 0.00026 5.7E-09 72.6 6.3 106 74-179 10-115 (476)
258 PF13281 DUF4071: Domain of un 97.4 0.005 1.1E-07 62.9 15.4 175 244-423 141-334 (374)
259 PF13176 TPR_7: Tetratricopept 97.4 0.0002 4.3E-09 46.1 3.3 31 725-755 1-31 (36)
260 PF07719 TPR_2: Tetratricopept 97.4 0.00048 1E-08 43.8 5.0 34 314-347 1-34 (34)
261 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0013 2.9E-08 63.9 10.0 108 273-380 75-185 (390)
262 KOG0545 Aryl-hydrocarbon recep 97.4 0.0045 9.7E-08 57.5 12.9 103 103-205 179-299 (329)
263 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0014 3E-08 63.7 9.4 98 70-167 83-184 (390)
264 PF10300 DUF3808: Protein of u 97.2 0.014 3.1E-07 63.4 17.6 182 156-344 177-377 (468)
265 PF08631 SPO22: Meiosis protei 97.2 0.32 7E-06 49.1 27.9 63 138-200 86-151 (278)
266 PF03704 BTAD: Bacterial trans 97.2 0.011 2.3E-07 53.2 13.6 58 105-162 65-122 (146)
267 PRK13184 pknD serine/threonine 97.2 0.84 1.8E-05 53.4 34.7 371 41-420 482-922 (932)
268 COG4649 Uncharacterized protei 97.1 0.068 1.5E-06 47.2 17.0 57 286-342 139-195 (221)
269 PF03704 BTAD: Bacterial trans 97.1 0.014 3.1E-07 52.4 14.0 97 34-130 6-124 (146)
270 PF13174 TPR_6: Tetratricopept 97.1 0.00068 1.5E-08 42.7 3.9 32 724-755 1-32 (33)
271 PF08631 SPO22: Meiosis protei 97.1 0.37 8E-06 48.6 27.9 154 44-198 3-185 (278)
272 COG2909 MalT ATP-dependent tra 97.1 0.73 1.6E-05 51.8 30.9 301 30-339 342-684 (894)
273 PRK11619 lytic murein transgly 97.1 0.83 1.8E-05 51.7 32.4 321 34-376 33-374 (644)
274 KOG1308 Hsp70-interacting prot 97.1 0.001 2.2E-08 65.1 5.9 89 78-166 124-212 (377)
275 COG2976 Uncharacterized protei 97.1 0.031 6.7E-07 50.6 14.6 93 250-344 95-189 (207)
276 PF02259 FAT: FAT domain; Int 97.0 0.32 6.9E-06 51.4 25.4 246 35-291 30-304 (352)
277 COG2976 Uncharacterized protei 97.0 0.079 1.7E-06 48.1 16.7 118 86-204 70-193 (207)
278 PF08424 NRDE-2: NRDE-2, neces 97.0 0.065 1.4E-06 55.2 18.5 134 152-308 47-183 (321)
279 KOG0530 Protein farnesyltransf 97.0 0.31 6.6E-06 46.4 20.6 185 48-255 40-232 (318)
280 KOG2396 HAT (Half-A-TPR) repea 96.9 0.72 1.6E-05 48.3 30.3 83 29-111 100-183 (568)
281 COG4649 Uncharacterized protei 96.9 0.11 2.3E-06 46.0 16.1 149 175-325 63-211 (221)
282 KOG2041 WD40 repeat protein [G 96.9 0.72 1.6E-05 50.0 24.9 188 49-269 678-877 (1189)
283 PF08424 NRDE-2: NRDE-2, neces 96.8 0.096 2.1E-06 54.0 18.7 117 119-235 48-183 (321)
284 KOG0890 Protein kinase of the 96.8 1 2.2E-05 56.3 29.0 116 240-358 1666-1799(2382)
285 PF13181 TPR_8: Tetratricopept 96.8 0.0029 6.4E-08 40.0 4.7 33 315-347 2-34 (34)
286 PF04910 Tcf25: Transcriptiona 96.6 0.14 2.9E-06 53.5 17.4 167 60-236 32-223 (360)
287 KOG1308 Hsp70-interacting prot 96.5 0.0028 6E-08 62.1 4.5 86 115-200 127-212 (377)
288 KOG3824 Huntingtin interacting 96.4 0.012 2.6E-07 56.6 8.0 66 79-144 127-192 (472)
289 PF09613 HrpB1_HrpK: Bacterial 96.4 0.064 1.4E-06 47.5 11.6 86 34-119 10-95 (160)
290 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.4 3.1E-05 45.4 28.9 216 159-381 291-535 (660)
291 KOG1310 WD40 repeat protein [G 96.4 0.02 4.4E-07 59.3 9.7 109 28-136 368-479 (758)
292 PRK11619 lytic murein transgly 96.4 2.5 5.5E-05 47.9 29.1 268 56-342 84-374 (644)
293 PF13174 TPR_6: Tetratricopept 96.3 0.009 2E-07 37.4 4.5 33 315-347 1-33 (33)
294 PF04910 Tcf25: Transcriptiona 96.2 0.23 4.9E-06 51.8 16.7 173 162-347 32-226 (360)
295 PF04781 DUF627: Protein of un 96.2 0.06 1.3E-06 44.1 9.5 103 40-165 2-107 (111)
296 COG0790 FOG: TPR repeat, SEL1 96.2 1.8 3.9E-05 44.2 25.4 167 43-220 50-236 (292)
297 KOG1464 COP9 signalosome, subu 96.2 0.56 1.2E-05 44.7 17.0 51 46-96 39-93 (440)
298 COG0790 FOG: TPR repeat, SEL1 96.2 1.8 4E-05 44.1 24.8 166 78-258 51-236 (292)
299 KOG2396 HAT (Half-A-TPR) repea 96.1 2.2 4.8E-05 44.8 29.2 88 54-141 91-179 (568)
300 PF14561 TPR_20: Tetratricopep 95.9 0.11 2.4E-06 41.6 9.8 66 156-221 8-73 (90)
301 PF13176 TPR_7: Tetratricopept 95.8 0.02 4.4E-07 36.7 4.3 28 316-343 1-28 (36)
302 COG5159 RPN6 26S proteasome re 95.8 2 4.4E-05 41.5 21.6 284 38-345 7-316 (421)
303 smart00028 TPR Tetratricopepti 95.7 0.018 3.9E-07 35.5 3.8 32 724-755 2-33 (34)
304 PF14561 TPR_20: Tetratricopep 95.7 0.16 3.4E-06 40.7 9.9 64 54-117 8-73 (90)
305 PRK10941 hypothetical protein; 95.6 0.12 2.6E-06 51.0 11.0 69 138-206 183-251 (269)
306 PF07079 DUF1347: Protein of u 95.6 3.6 7.7E-05 42.8 45.4 129 37-165 9-157 (549)
307 KOG3824 Huntingtin interacting 95.5 0.046 9.9E-07 52.8 7.4 73 107-179 121-193 (472)
308 KOG3783 Uncharacterized conser 95.5 1.2 2.6E-05 47.3 18.2 64 317-380 452-523 (546)
309 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.071 1.5E-06 37.4 6.5 43 315-357 2-44 (53)
310 PF04781 DUF627: Protein of un 95.5 0.14 3E-06 42.0 9.0 103 74-199 2-107 (111)
311 TIGR02561 HrpB1_HrpK type III 95.5 0.23 5.1E-06 43.1 10.7 85 34-118 10-94 (153)
312 PF09613 HrpB1_HrpK: Bacterial 95.4 0.3 6.5E-06 43.3 11.5 81 106-186 14-94 (160)
313 KOG1464 COP9 signalosome, subu 95.4 1.6 3.5E-05 41.7 16.8 189 81-270 40-257 (440)
314 PRK15180 Vi polysaccharide bio 95.4 0.18 3.9E-06 51.9 11.4 126 43-168 298-423 (831)
315 PF12968 DUF3856: Domain of Un 95.4 0.71 1.5E-05 38.1 12.4 92 37-128 12-126 (144)
316 KOG1463 26S proteasome regulat 95.3 3.4 7.4E-05 41.2 22.1 291 37-359 7-329 (411)
317 PRK10941 hypothetical protein; 95.2 0.24 5.2E-06 48.9 11.6 61 173-235 184-244 (269)
318 KOG1538 Uncharacterized conser 95.1 1.1 2.4E-05 48.1 16.4 195 141-376 637-845 (1081)
319 PRK15180 Vi polysaccharide bio 95.0 0.24 5.1E-06 51.1 11.0 127 78-204 299-425 (831)
320 PF10602 RPN7: 26S proteasome 94.7 0.55 1.2E-05 43.4 11.9 103 171-273 37-142 (177)
321 KOG3364 Membrane protein invol 94.7 0.71 1.5E-05 39.2 11.0 80 278-357 31-114 (149)
322 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.2 4.3E-06 35.2 6.6 34 139-172 4-37 (53)
323 smart00028 TPR Tetratricopepti 94.6 0.062 1.3E-06 32.9 3.9 32 315-346 2-33 (34)
324 KOG1839 Uncharacterized protei 94.4 0.43 9.2E-06 56.0 12.3 164 32-195 930-1124(1236)
325 COG1747 Uncharacterized N-term 94.4 8.3 0.00018 40.8 21.9 99 98-199 62-160 (711)
326 KOG3783 Uncharacterized conser 94.3 9.2 0.0002 41.0 26.4 222 121-346 252-523 (546)
327 COG3914 Spy Predicted O-linked 94.2 1.8 3.9E-05 46.5 15.4 125 53-177 50-183 (620)
328 PF10602 RPN7: 26S proteasome 94.2 0.22 4.8E-06 46.0 8.0 103 315-423 37-142 (177)
329 PF09986 DUF2225: Uncharacteri 93.9 0.98 2.1E-05 43.2 11.9 28 208-235 120-147 (214)
330 PRK13184 pknD serine/threonine 93.9 18 0.00038 42.8 25.8 98 74-172 481-588 (932)
331 PF09986 DUF2225: Uncharacteri 93.8 1.4 2.9E-05 42.2 12.8 42 220-261 91-135 (214)
332 PF04053 Coatomer_WDAD: Coatom 93.8 2.2 4.7E-05 45.9 15.7 157 43-232 270-428 (443)
333 KOG1538 Uncharacterized conser 93.7 7.2 0.00016 42.4 18.5 56 37-93 588-657 (1081)
334 COG3914 Spy Predicted O-linked 93.7 3.2 6.9E-05 44.7 16.0 124 82-205 45-177 (620)
335 KOG3364 Membrane protein invol 93.6 1.7 3.7E-05 37.0 11.2 78 241-319 29-110 (149)
336 PF13374 TPR_10: Tetratricopep 93.4 0.1 2.2E-06 34.6 3.4 32 724-755 3-34 (42)
337 COG4976 Predicted methyltransf 93.4 0.13 2.8E-06 47.7 4.8 59 78-136 5-63 (287)
338 KOG2422 Uncharacterized conser 93.3 9.1 0.0002 41.2 18.5 49 47-95 251-311 (665)
339 TIGR02561 HrpB1_HrpK type III 93.3 1.2 2.5E-05 38.9 10.1 70 115-184 23-92 (153)
340 COG4976 Predicted methyltransf 92.9 0.17 3.7E-06 47.0 4.9 61 110-170 3-63 (287)
341 PF15015 NYD-SP12_N: Spermatog 92.9 1.9 4.1E-05 44.1 12.3 94 30-123 168-283 (569)
342 KOG2581 26S proteasome regulat 92.7 3.4 7.3E-05 42.2 13.8 142 28-169 118-280 (493)
343 COG5191 Uncharacterized conser 92.6 0.26 5.7E-06 47.9 5.8 76 99-174 104-180 (435)
344 PF12968 DUF3856: Domain of Un 92.5 4.6 0.0001 33.6 11.8 95 69-163 8-127 (144)
345 PF04053 Coatomer_WDAD: Coatom 92.4 3.1 6.7E-05 44.8 14.4 130 213-372 268-397 (443)
346 KOG4814 Uncharacterized conser 92.4 0.95 2.1E-05 48.7 10.0 97 71-167 357-459 (872)
347 PF10579 Rapsyn_N: Rapsyn N-te 92.4 1.1 2.3E-05 34.2 7.6 64 33-96 5-71 (80)
348 PF11207 DUF2989: Protein of u 92.2 1.8 4E-05 40.0 10.5 74 294-368 121-198 (203)
349 KOG1463 26S proteasome regulat 92.1 14 0.00031 37.0 20.8 172 209-380 131-319 (411)
350 KOG1310 WD40 repeat protein [G 91.2 0.62 1.3E-05 48.9 7.0 83 120-202 392-477 (758)
351 KOG2422 Uncharacterized conser 90.8 22 0.00048 38.5 17.8 160 115-275 251-450 (665)
352 KOG2114 Vacuolar assembly/sort 90.7 26 0.00056 39.8 18.9 203 74-303 340-545 (933)
353 PF13374 TPR_10: Tetratricopep 90.6 0.61 1.3E-05 30.7 4.6 29 315-343 3-31 (42)
354 KOG0529 Protein geranylgeranyl 90.5 20 0.00042 37.2 16.6 148 34-181 28-194 (421)
355 KOG1839 Uncharacterized protei 90.3 4 8.7E-05 48.4 13.2 164 71-234 935-1127(1236)
356 KOG3807 Predicted membrane pro 90.0 22 0.00048 35.4 16.6 145 72-229 188-334 (556)
357 COG5191 Uncharacterized conser 89.9 0.7 1.5E-05 45.1 5.7 76 31-106 104-180 (435)
358 PF07721 TPR_4: Tetratricopept 89.8 0.4 8.6E-06 27.9 2.6 25 724-748 2-26 (26)
359 PF11207 DUF2989: Protein of u 89.8 3.3 7.1E-05 38.5 9.7 75 259-334 121-198 (203)
360 PF13041 PPR_2: PPR repeat fam 89.6 1.4 3.1E-05 30.5 5.9 44 279-322 3-46 (50)
361 COG2912 Uncharacterized conser 89.5 3.7 8.1E-05 40.0 10.3 61 111-171 190-250 (269)
362 KOG3807 Predicted membrane pro 89.4 24 0.00053 35.1 19.9 163 140-319 188-351 (556)
363 PRK12798 chemotaxis protein; R 89.0 32 0.0007 36.0 24.9 270 29-308 32-324 (421)
364 PF12862 Apc5: Anaphase-promot 87.8 6.7 0.00015 31.8 9.6 27 209-235 44-70 (94)
365 PF12862 Apc5: Anaphase-promot 87.8 4.7 0.0001 32.7 8.6 56 217-272 9-69 (94)
366 COG3629 DnrI DNA-binding trans 87.5 3 6.5E-05 41.2 8.5 80 50-131 137-216 (280)
367 PF07721 TPR_4: Tetratricopept 86.7 1.2 2.5E-05 25.9 3.3 25 783-807 2-26 (26)
368 COG5159 RPN6 26S proteasome re 86.7 34 0.00073 33.6 21.7 282 72-380 7-317 (421)
369 PF07720 TPR_3: Tetratricopept 86.6 2 4.3E-05 27.4 4.5 17 74-90 7-23 (36)
370 COG4941 Predicted RNA polymera 86.6 27 0.00059 35.1 14.1 190 152-356 212-407 (415)
371 KOG2581 26S proteasome regulat 86.5 43 0.00094 34.7 18.5 131 217-347 137-280 (493)
372 COG3629 DnrI DNA-binding trans 86.4 4.1 8.8E-05 40.4 8.7 59 139-197 156-214 (280)
373 PF12854 PPR_1: PPR repeat 86.4 0.94 2E-05 28.4 2.9 28 393-420 6-33 (34)
374 PF13041 PPR_2: PPR repeat fam 86.3 2.5 5.5E-05 29.3 5.5 42 246-287 5-46 (50)
375 PF12854 PPR_1: PPR repeat 85.5 1.6 3.4E-05 27.4 3.6 29 528-559 5-33 (34)
376 COG2912 Uncharacterized conser 85.4 5.5 0.00012 38.9 8.9 74 71-144 184-257 (269)
377 COG5187 RPN7 26S proteasome re 84.5 36 0.00078 33.4 13.6 105 170-275 115-223 (412)
378 PF07720 TPR_3: Tetratricopept 84.3 2 4.2E-05 27.4 3.6 31 724-754 2-34 (36)
379 PF15015 NYD-SP12_N: Spermatog 84.1 11 0.00025 38.8 10.7 24 537-560 460-483 (569)
380 PF10516 SHNi-TPR: SHNi-TPR; 83.7 2.3 5.1E-05 27.4 3.8 29 315-343 2-30 (38)
381 KOG0128 RNA-binding protein SA 83.3 91 0.002 35.7 30.4 152 48-200 93-261 (881)
382 PF09670 Cas_Cas02710: CRISPR- 83.0 19 0.00042 38.0 12.7 62 36-97 133-198 (379)
383 PF07079 DUF1347: Protein of u 82.8 69 0.0015 33.9 41.5 129 70-198 8-156 (549)
384 PF10516 SHNi-TPR: SHNi-TPR; 82.1 2.4 5.2E-05 27.4 3.4 27 70-96 3-29 (38)
385 KOG0889 Histone acetyltransfer 82.1 88 0.0019 42.2 19.3 115 245-359 2737-2857(3550)
386 KOG0529 Protein geranylgeranyl 81.6 19 0.00041 37.4 11.2 127 49-175 90-234 (421)
387 PF10579 Rapsyn_N: Rapsyn N-te 81.3 11 0.00024 28.9 7.2 52 180-231 16-68 (80)
388 PF14863 Alkyl_sulf_dimr: Alky 81.2 4.9 0.00011 35.3 6.2 50 34-83 70-119 (141)
389 PF00244 14-3-3: 14-3-3 protei 81.2 57 0.0012 31.9 14.8 27 141-167 6-32 (236)
390 PF04190 DUF410: Protein of un 80.8 63 0.0014 32.1 21.7 120 242-362 88-242 (260)
391 PF11817 Foie-gras_1: Foie gra 80.7 61 0.0013 31.9 15.3 57 210-266 182-240 (247)
392 TIGR03504 FimV_Cterm FimV C-te 79.4 2.8 6.1E-05 28.1 3.2 25 785-809 2-26 (44)
393 COG4455 ImpE Protein of avirul 79.4 13 0.00027 34.9 8.3 61 42-102 9-69 (273)
394 PF04097 Nic96: Nup93/Nic96; 78.0 1.1E+02 0.0024 35.0 17.3 25 356-381 513-537 (613)
395 KOG0276 Vesicle coat complex C 77.9 41 0.00089 36.7 12.6 45 113-162 648-692 (794)
396 smart00386 HAT HAT (Half-A-TPR 77.5 5.8 0.00013 24.0 4.2 30 328-357 1-30 (33)
397 smart00386 HAT HAT (Half-A-TPR 76.5 7 0.00015 23.6 4.4 27 151-177 2-28 (33)
398 COG1747 Uncharacterized N-term 76.5 1.2E+02 0.0025 32.8 28.0 79 84-165 82-160 (711)
399 COG5536 BET4 Protein prenyltra 75.9 58 0.0013 32.0 11.9 172 34-205 31-228 (328)
400 COG3947 Response regulator con 75.9 12 0.00026 36.7 7.5 61 70-130 281-341 (361)
401 PRK12798 chemotaxis protein; R 75.7 1.1E+02 0.0024 32.2 21.7 229 40-272 86-323 (421)
402 COG4455 ImpE Protein of avirul 75.6 19 0.00042 33.8 8.4 58 146-203 11-68 (273)
403 smart00299 CLH Clathrin heavy 75.5 56 0.0012 28.6 15.9 37 147-183 18-54 (140)
404 PF01535 PPR: PPR repeat; Int 75.5 2.8 6.1E-05 25.1 2.3 29 396-424 2-30 (31)
405 COG3947 Response regulator con 75.2 13 0.00027 36.6 7.4 61 104-164 281-341 (361)
406 PF10373 EST1_DNA_bind: Est1 D 75.2 9.4 0.0002 38.5 7.4 62 121-182 1-62 (278)
407 PF10373 EST1_DNA_bind: Est1 D 74.6 13 0.00028 37.5 8.2 62 87-148 1-62 (278)
408 TIGR03504 FimV_Cterm FimV C-te 73.7 7.4 0.00016 26.1 4.0 25 38-62 3-27 (44)
409 PF12739 TRAPPC-Trs85: ER-Golg 73.4 1.1E+02 0.0024 32.9 15.2 28 105-132 211-238 (414)
410 KOG2063 Vacuolar assembly/sort 72.3 69 0.0015 37.5 13.6 168 209-376 507-712 (877)
411 PF13812 PPR_3: Pentatricopept 72.1 4.7 0.0001 24.8 2.8 30 396-425 3-32 (34)
412 PF09670 Cas_Cas02710: CRISPR- 71.8 55 0.0012 34.7 12.1 18 326-343 253-270 (379)
413 TIGR00756 PPR pentatricopeptid 71.7 3.8 8.2E-05 25.3 2.3 30 396-425 2-31 (35)
414 PF04190 DUF410: Protein of un 71.0 1.1E+02 0.0025 30.3 22.9 27 134-160 88-114 (260)
415 KOG4521 Nuclear pore complex, 69.7 2.1E+02 0.0045 34.4 16.2 174 170-345 920-1134(1480)
416 KOG0292 Vesicle coat complex C 69.6 2.2E+02 0.0048 33.0 22.3 105 248-353 995-1123(1202)
417 KOG0686 COP9 signalosome, subu 69.6 1.2E+02 0.0026 31.7 13.0 65 171-235 151-216 (466)
418 KOG2114 Vacuolar assembly/sort 69.5 2.2E+02 0.0047 32.9 24.4 109 41-156 341-451 (933)
419 smart00299 CLH Clathrin heavy 69.2 79 0.0017 27.7 14.8 118 45-181 18-136 (140)
420 KOG4814 Uncharacterized conser 68.5 2E+02 0.0043 32.1 23.9 97 104-200 356-458 (872)
421 PF11817 Foie-gras_1: Foie gra 68.4 42 0.00091 33.1 9.9 62 171-232 179-244 (247)
422 KOG4014 Uncharacterized conser 67.9 99 0.0022 28.3 13.7 28 117-146 88-115 (248)
423 KOG0546 HSP90 co-chaperone CPR 67.6 10 0.00022 38.4 5.1 128 40-182 228-355 (372)
424 PF10255 Paf67: RNA polymerase 67.0 14 0.00031 38.8 6.5 59 284-342 127-192 (404)
425 PF04090 RNA_pol_I_TF: RNA pol 66.0 1.1E+02 0.0024 28.7 11.3 36 108-143 47-82 (199)
426 KOG0276 Vesicle coat complex C 65.2 99 0.0021 34.0 12.0 127 41-196 621-747 (794)
427 KOG4014 Uncharacterized conser 64.8 1.2E+02 0.0025 27.9 13.8 169 46-235 47-233 (248)
428 PF10952 DUF2753: Protein of u 64.1 19 0.00042 30.2 5.3 71 725-805 3-73 (140)
429 PF01535 PPR: PPR repeat; Int 63.1 12 0.00026 22.2 3.2 19 177-195 7-25 (31)
430 PF14863 Alkyl_sulf_dimr: Alky 62.7 26 0.00057 30.8 6.3 50 314-363 70-119 (141)
431 PF10255 Paf67: RNA polymerase 61.9 1.2E+02 0.0026 32.2 11.9 60 247-306 125-191 (404)
432 PF02064 MAS20: MAS20 protein 61.6 19 0.00042 30.6 5.1 28 39-66 68-95 (121)
433 TIGR00756 PPR pentatricopeptid 61.3 21 0.00045 21.7 4.3 24 283-306 4-27 (35)
434 PF04097 Nic96: Nup93/Nic96; 61.1 3E+02 0.0065 31.5 26.2 23 37-59 114-136 (613)
435 cd02682 MIT_AAA_Arch MIT: doma 60.4 42 0.0009 25.7 6.1 31 32-62 4-34 (75)
436 COG4941 Predicted RNA polymera 60.4 2E+02 0.0044 29.3 17.8 29 85-113 213-241 (415)
437 PF02064 MAS20: MAS20 protein 59.8 22 0.00048 30.2 5.1 45 629-685 58-102 (121)
438 TIGR02710 CRISPR-associated pr 59.2 2E+02 0.0044 30.2 12.9 64 30-93 124-196 (380)
439 PF07219 HemY_N: HemY protein 58.9 51 0.0011 27.5 7.3 49 35-83 60-108 (108)
440 KOG0687 26S proteasome regulat 58.6 2.1E+02 0.0046 29.0 14.7 105 170-275 104-212 (393)
441 KOG2063 Vacuolar assembly/sort 57.4 3.9E+02 0.0085 31.7 18.0 29 244-272 684-712 (877)
442 PF04840 Vps16_C: Vps16, C-ter 56.8 2.4E+02 0.0052 29.0 27.3 102 253-373 186-287 (319)
443 PF12739 TRAPPC-Trs85: ER-Golg 56.6 2.8E+02 0.0062 29.8 15.9 29 139-167 211-239 (414)
444 KOG0687 26S proteasome regulat 56.0 2.4E+02 0.0051 28.7 12.2 102 136-237 104-212 (393)
445 PF00244 14-3-3: 14-3-3 protei 55.2 2.1E+02 0.0046 27.9 12.8 59 36-94 3-63 (236)
446 KOG1920 IkappaB kinase complex 53.3 5E+02 0.011 31.6 25.6 23 38-60 681-703 (1265)
447 TIGR03362 VI_chp_7 type VI sec 51.6 2.8E+02 0.0061 28.3 15.2 160 29-199 97-279 (301)
448 COG5187 RPN7 26S proteasome re 51.3 2.6E+02 0.0057 27.8 11.9 102 206-308 115-221 (412)
449 PF04348 LppC: LppC putative l 50.7 5.2 0.00011 44.5 0.0 93 245-337 25-121 (536)
450 KOG4521 Nuclear pore complex, 50.6 5.4E+02 0.012 31.3 16.9 29 68-96 920-948 (1480)
451 KOG1920 IkappaB kinase complex 50.6 5.5E+02 0.012 31.3 23.6 23 318-340 1003-1025(1265)
452 COG5536 BET4 Protein prenyltra 50.5 1.1E+02 0.0023 30.3 8.5 128 50-177 90-234 (328)
453 PF13812 PPR_3: Pentatricopept 50.4 41 0.00088 20.4 4.2 22 175-196 6-27 (34)
454 PF10037 MRP-S27: Mitochondria 50.0 1.7E+02 0.0037 31.4 10.9 57 250-306 109-165 (429)
455 PF13226 DUF4034: Domain of un 49.2 2.1E+02 0.0047 28.5 10.8 135 40-187 6-150 (277)
456 KOG0686 COP9 signalosome, subu 48.1 3.6E+02 0.0077 28.4 15.2 63 245-307 151-215 (466)
457 PF04348 LppC: LppC putative l 47.8 6.1 0.00013 43.9 0.0 22 175-196 29-50 (536)
458 KOG1497 COP9 signalosome, subu 47.5 3.2E+02 0.0069 27.7 15.9 188 137-324 24-229 (399)
459 KOG0546 HSP90 co-chaperone CPR 46.6 17 0.00037 36.8 2.9 68 73-140 280-347 (372)
460 KOG2280 Vacuolar assembly/sort 45.8 5.2E+02 0.011 29.7 27.1 83 43-125 446-530 (829)
461 PHA02537 M terminase endonucle 45.8 31 0.00067 33.2 4.4 22 148-169 190-211 (230)
462 cd02682 MIT_AAA_Arch MIT: doma 45.6 84 0.0018 24.1 5.7 22 320-341 12-33 (75)
463 PF01239 PPTA: Protein prenylt 44.1 65 0.0014 19.4 4.2 26 593-618 3-28 (31)
464 PF11846 DUF3366: Domain of un 42.6 71 0.0015 30.0 6.4 44 89-133 132-175 (193)
465 cd02683 MIT_1 MIT: domain cont 42.2 61 0.0013 25.0 4.7 30 33-62 5-34 (77)
466 PF10037 MRP-S27: Mitochondria 41.5 3.2E+02 0.0069 29.4 11.4 95 255-349 77-174 (429)
467 KOG4151 Myosin assembly protei 41.1 1.2E+02 0.0026 34.6 8.4 106 36-141 55-166 (748)
468 PRK09687 putative lyase; Provi 41.0 3.9E+02 0.0085 26.9 27.6 59 280-345 207-265 (280)
469 PF01851 PC_rep: Proteasome/cy 41.0 34 0.00073 21.6 2.6 26 784-810 2-27 (35)
470 PF04212 MIT: MIT (microtubule 40.2 78 0.0017 23.6 5.1 28 35-62 6-33 (69)
471 PF13226 DUF4034: Domain of un 40.1 3E+02 0.0066 27.5 10.3 137 76-227 8-154 (277)
472 PF12921 ATP13: Mitochondrial 39.7 2.5E+02 0.0054 24.2 10.3 74 174-249 6-93 (126)
473 PF11846 DUF3366: Domain of un 39.6 96 0.0021 29.1 6.8 45 156-201 131-175 (193)
474 cd02680 MIT_calpain7_2 MIT: do 39.5 45 0.00097 25.6 3.5 25 37-61 9-33 (75)
475 cd02681 MIT_calpain7_1 MIT: do 38.6 70 0.0015 24.6 4.5 30 33-62 5-34 (76)
476 KOG0128 RNA-binding protein SA 37.9 7.2E+02 0.015 29.0 33.4 258 119-380 96-379 (881)
477 cd02680 MIT_calpain7_2 MIT: do 37.3 70 0.0015 24.5 4.2 34 49-97 2-35 (75)
478 PF07163 Pex26: Pex26 protein; 37.1 4.4E+02 0.0095 26.3 14.8 86 286-372 90-182 (309)
479 TIGR03362 VI_chp_7 type VI sec 37.0 4.7E+02 0.01 26.7 19.2 150 148-307 111-278 (301)
480 COG3107 LppC Putative lipoprot 36.7 6.1E+02 0.013 27.9 16.1 90 241-330 60-152 (604)
481 KOG0292 Vesicle coat complex C 36.6 4.6E+02 0.01 30.7 11.8 33 33-65 990-1022(1202)
482 PF06957 COPI_C: Coatomer (COP 35.7 1.3E+02 0.0028 32.1 7.3 32 32-63 202-233 (422)
483 cd00280 TRFH Telomeric Repeat 35.6 2.8E+02 0.006 25.7 8.3 77 295-372 85-168 (200)
484 PRK15490 Vi polysaccharide bio 35.3 2.3E+02 0.005 31.7 9.4 75 84-160 24-98 (578)
485 TIGR00985 3a0801s04tom mitocho 35.1 90 0.002 27.6 5.2 45 629-685 85-130 (148)
486 PRK15490 Vi polysaccharide bio 33.5 2.8E+02 0.0061 31.1 9.7 81 44-126 18-98 (578)
487 KOG4279 Serine/threonine prote 32.9 1.1E+02 0.0023 34.7 6.3 121 240-362 197-334 (1226)
488 smart00101 14_3_3 14-3-3 homol 32.5 4.9E+02 0.011 25.5 17.7 169 105-273 4-200 (244)
489 PF12309 KBP_C: KIF-1 binding 32.2 1.2E+02 0.0026 31.9 6.6 54 703-756 263-342 (371)
490 KOG2062 26S proteasome regulat 31.7 8.5E+02 0.018 28.1 17.9 147 248-408 505-656 (929)
491 KOG4563 Cell cycle-regulated h 31.0 1.1E+02 0.0024 31.4 5.6 59 30-88 37-103 (400)
492 cd02678 MIT_VPS4 MIT: domain c 30.8 1.2E+02 0.0027 23.1 4.8 29 34-62 6-34 (75)
493 PF07219 HemY_N: HemY protein 30.5 2.2E+02 0.0047 23.7 6.7 45 72-116 63-107 (108)
494 cd02684 MIT_2 MIT: domain cont 30.5 1.2E+02 0.0026 23.3 4.6 29 34-62 6-34 (75)
495 KOG2561 Adaptor protein NUB1, 30.3 4.4E+02 0.0096 28.0 9.7 28 138-165 269-296 (568)
496 PF14852 Fis1_TPR_N: Fis1 N-te 30.0 1.2E+02 0.0025 19.3 3.6 30 681-717 3-32 (35)
497 smart00745 MIT Microtubule Int 29.7 1.3E+02 0.0028 23.0 4.9 29 34-62 8-36 (77)
498 COG4259 Uncharacterized protei 29.1 2.8E+02 0.006 22.6 6.3 48 301-348 59-106 (121)
499 smart00671 SEL1 Sel1-like repe 28.9 1.2E+02 0.0026 18.5 3.9 13 83-95 20-32 (36)
500 PF13934 ELYS: Nuclear pore co 28.8 5E+02 0.011 25.1 9.8 89 32-127 76-165 (226)
No 1
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=8.5e-93 Score=742.00 Aligned_cols=739 Identities=33% Similarity=0.492 Sum_probs=620.5
Q ss_pred cchhhhcccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHH
Q 003548 12 KTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY 91 (811)
Q Consensus 12 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 91 (811)
+++++.+|+++.+..+..++|++..++++|+.++..|++++|..++.++|+++|.++.+|+.||.+|.++|+.++|..++
T Consensus 117 ~~s~~~~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 117 EKSTGTKKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred eecccCCccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 55566677777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 003548 92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN-- 169 (811)
Q Consensus 92 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-- 169 (811)
..|.+++|++.+.|..++....++|++++|.-||.++++.+|.+....+..+.+|.+.|+...|...|.+++...|..
T Consensus 197 llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 197 LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999832
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------
Q 003548 170 ---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI------------ 234 (811)
Q Consensus 170 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------ 234 (811)
.+.....+..+...++-+.|++.++.++....+-.....++.++.+++....++.|.........
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 13344557788888888999999999998544444434688999999999999999988877655
Q ss_pred ----------Hh--ccCCCChHHH-HHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHH
Q 003548 235 ----------VR--FSGKELPLKL-KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301 (811)
Q Consensus 235 ----------~~--~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 301 (811)
.. +.+.+....+ +..++.+..+.++..+++.++.......+.+.++.+..++.++...|++.+|+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11 1111222233 4555555555666666666665544444778899999999999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCccc
Q 003548 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (811)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (811)
|..+.......+..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.++|+.++|.+.+++....++.+
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99999776666888999999999999999999999999999999999999999999999999999999999998777665
Q ss_pred CCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccc
Q 003548 382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL 461 (811)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 461 (811)
.. ...||++..+.+.+..+|...|+.++.+.+...++..++......++.+++++.... .....+
T Consensus 517 ~e---~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~------------~~~~~~ 581 (895)
T KOG2076|consen 517 AE---ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIA------------GTTSKR 581 (895)
T ss_pred hh---hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhc------------cccccc
Confidence 44 778999999999999999999999999999999999988877665543333221110 000000
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CCCCchhhhhhcCCCCCCCCCCcchhHHHHHHH
Q 003548 462 CGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHS--DDTDDESQQEAFREPPLPNLLKNEENQCLIIDL 539 (811)
Q Consensus 462 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 539 (811)
.+ .+.+.....+. -+..|.. ....++ .++.....+ .++.++||++++.+
T Consensus 582 ~~-----~~~~~~~~~~~--------------------k~~~~~~~~~~l~d~---~~~~~~e~~-~Lsiddwfel~~e~ 632 (895)
T KOG2076|consen 582 YS-----ELLKQIIRARE--------------------KATDDNVMEKALSDG---TEFRAVELR-GLSIDDWFELFREL 632 (895)
T ss_pred cc-----hhHHHHHHHHh--------------------ccCchHHhhhcccch---hhhhhhhhc-cCcHHHHHHHHHHH
Confidence 00 00000000000 0000000 000000 111222223 36788999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHh-----CCCChhHHHHHH
Q 003548 540 CKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-----HPYSLSAWNCYY 614 (811)
Q Consensus 540 ~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~-----~p~~~~~~~~~~ 614 (811)
...+.+.+++.||+.++..++....+.+++++...|.++++.|++.++|+..|++++|.++.. +|.....||+..
T Consensus 633 i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 633 ILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999999998888888888999999999999999999999999999998 888899999777
Q ss_pred HHHHhhcccccccchhhHHHHHHHHhcCCC-CCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 003548 615 KVLSRMGKINSKHSKHSKFIRYLRAKYKDC-VPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLA 693 (811)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~ 693 (811)
++++..++ .+...+++++.+.++|++ +++.+++||+++.+++|..|+.+|++|+..+|++|++++|||++|+|+|
T Consensus 713 s~~~~~~q----~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a 788 (895)
T KOG2076|consen 713 SYFSKYGQ----RVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLA 788 (895)
T ss_pred HHHHHHHH----HHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 77777777 467889999999999887 6667999999999999999999999999999999999999999999999
Q ss_pred hCccccchHHHHHHHHHHHHHhHhhcCC--CchhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCcccc
Q 003548 694 LGFRLQNKHQCLAQGFAFLYNNLRLCEH--SQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLME 771 (811)
Q Consensus 694 ~~r~~~~r~~~~~q~~~~l~~y~~~~~~--~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~ 771 (811)
|||.+.+||.+|.|||+||++|.++|.. +||+.||+||+||++|+.|+|++||+|||+++|....
T Consensus 789 ~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~------------- 855 (895)
T KOG2076|consen 789 LQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVT------------- 855 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccc-------------
Confidence 9999999999999999999999999887 8999999999999999999999999999999886421
Q ss_pred CCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 003548 772 SGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYCTF 811 (811)
Q Consensus 772 ~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~ky~~~ 811 (811)
+...+++||++||||||+|||+.|||+.+|++|++|||+|
T Consensus 856 ~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl~~ 895 (895)
T KOG2076|consen 856 DPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYLVF 895 (895)
T ss_pred cccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhccC
Confidence 1122579999999999999999999999999999999997
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-45 Score=444.92 Aligned_cols=638 Identities=18% Similarity=0.184 Sum_probs=551.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
....+..|.+++..|++++|+..|+++++.+|+...++..+|.++...|++++|...+.+++...|.+...+..++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 340 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (811)
Q Consensus 114 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (811)
..|++++|+..+.+++..+|.++..+..++.++...|++++|...|+++++..|+++.++..++.++...|++++|+..+
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 003548 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (811)
Q Consensus 194 ~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 273 (811)
+++++..|.... ....++..+...|++++|+..+.+.... .|....++..+|.++...|++++|...|++++..
T Consensus 421 ~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 421 ETAAQLDPELGR--ADLLLILSYLRSGQFDKALAAAKKLEKK----QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHhhCCcchh--hHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999998775 5778899999999999999999999887 5667788999999999999999999999999988
Q ss_pred ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHH
Q 003548 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (811)
.| .+...+..++.++...|++++|+..|++++.. .|.+..++..++.++...|++++|+..+++++..+|.+...+..
T Consensus 495 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 EP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 87 47889999999999999999999999999976 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHH
Q 003548 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK 433 (811)
Q Consensus 354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 433 (811)
++.++...|++++|+..++++....|.+. .++..+|.++...|++++|+..++.+++..+........
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSP------------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999998888754 388999999999999999999999998754321100000
Q ss_pred HHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchh
Q 003548 434 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES 513 (811)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (811)
........ ....++.... ...+
T Consensus 641 --------------l~~~~~~~---------------~~~~~A~~~~------------------~~~~----------- 662 (899)
T TIGR02917 641 --------------LADAYAVM---------------KNYAKAITSL------------------KRAL----------- 662 (899)
T ss_pred --------------HHHHHHHc---------------CCHHHHHHHH------------------HHHH-----------
Confidence 00000000 0000000000 0000
Q ss_pred hhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchH
Q 003548 514 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF 593 (811)
Q Consensus 514 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~ 593 (811)
-..|++......++.++...|++++|..+++.+....+. ........+.+....|+++.|.
T Consensus 663 -------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 663 -------------ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK------AALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred -------------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------ChHHHHHHHHHHHHCCCHHHHH
Confidence 023455667788899999999999999999998753321 1222333445556789999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHh
Q 003548 594 DCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK 673 (811)
Q Consensus 594 ~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~ 673 (811)
..++.++...|++ ..+..+..++...|+ ...+.+.+.+.+..+|+++......|.++...|++..|+..|.++++
T Consensus 724 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 724 QAYRKALKRAPSS-QNAIKLHRALLASGN----TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhhCCCc-hHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999988 555556666666666 45788899999999999988889999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHHHHHHHcch
Q 003548 674 LLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIK 753 (811)
Q Consensus 674 ~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~ 753 (811)
.+|++|.+...+|.++.... . .+|+.++.+..++.|++..+++++|.++...|.+..|+++|+++++..
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~----------~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELK----------D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcC----------c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999887432 1 348999999999999999999999999999999999999999999997
Q ss_pred hccCCCCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003548 754 EKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 809 (811)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~ky~ 809 (811)
|.+ .++.+||+.+|...|+++.|.+++++-+
T Consensus 868 ~~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEA-------------------------AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCC-------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 642 6899999999999999999999999865
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-44 Score=431.95 Aligned_cols=649 Identities=15% Similarity=0.097 Sum_probs=424.8
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
+.....+...|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34455567778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (811)
++...|++++|+.+|++++..+|.++.++..++.++...|++++|...++++++..|.++.++...+.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003548 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (811)
Q Consensus 191 ~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 270 (811)
..++++++.+|+... .+..+|.++...|++++|...+.+++.. .|....+...++.++...|++++|+..++++
T Consensus 282 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 282 ETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKY----APNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888877654 5667788888888888888888888877 5566677777888888888888888888888
Q ss_pred hhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHH
Q 003548 271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 350 (811)
Q Consensus 271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 350 (811)
+...|. ++..+..+|.++...|++++|+.+|+++... .|.++.++..+|.++...|++++|+..++++++..|+...+
T Consensus 356 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 356 LGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 777663 6777888888888888888888888888765 67788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHH
Q 003548 351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 430 (811)
Q Consensus 351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 430 (811)
...++..+...|++++|+..+++.....|.+.. ++..+|.++...|++++|+..+.++++..+.....
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS------------LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 888888888888888888888887777666533 67788888888888888888888877654322111
Q ss_pred HH-HHHhhhh--cchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003548 431 RQ-KVKVKRR--LTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD 507 (811)
Q Consensus 431 ~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (811)
.. ....... -.++......+.+.
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~------------------------------------------------------ 527 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLT------------------------------------------------------ 527 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------------
Confidence 00 0000000 00000111111110
Q ss_pred CCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhccc
Q 003548 508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST 587 (811)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~ 587 (811)
..|++..++..++.++...|++++|..+++.++...+. ........+.+....|
T Consensus 528 --------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 528 --------------------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ------EIEPALALAQYYLGKG 581 (899)
T ss_pred --------------------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chhHHHHHHHHHHHCC
Confidence 11223334444444555555555555555544432211 0011111222222344
Q ss_pred CccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHH
Q 003548 588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARC 667 (811)
Q Consensus 588 d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 667 (811)
+++.|...++.++...|.+...|..+..++...++ ...+...+.+..+..|+++..+..+|.++...|++..|+..
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD----LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554455555555444444444433 22344444444444444444444445555455555555555
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhCcc------------------------ccchHHHHHHHHHHHHHhHhhcCCCc
Q 003548 668 YLEAYKLLPENPLINLCVGSALINLALGFR------------------------LQNKHQCLAQGFAFLYNNLRLCEHSQ 723 (811)
Q Consensus 668 y~~a~~~~p~~p~~~l~la~a~~~~~~~r~------------------------~~~r~~~~~q~~~~l~~y~~~~~~~~ 723 (811)
|.++++.+|+++.+.+.++..+...+.-.. ..-+.....+|+..+.+..+..|.+
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 736 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS- 736 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-
Confidence 555555555554444444444432110000 0000111334555555554444433
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQ 803 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~ 803 (811)
++.+++|.++...|.+..|+..|+++++..|++ .++.+++..+|...|+++.|..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------------------------AVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------HHHHHHHHHHHHHCcCHHHHHH
Confidence 455555555555555555555555555544331 5888899999999999999988
Q ss_pred HHHhhc
Q 003548 804 LLKDYC 809 (811)
Q Consensus 804 ~~~ky~ 809 (811)
++++-+
T Consensus 792 ~~~~~~ 797 (899)
T TIGR02917 792 HYRTVV 797 (899)
T ss_pred HHHHHH
Confidence 877643
No 4
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-39 Score=392.07 Aligned_cols=657 Identities=14% Similarity=0.105 Sum_probs=472.8
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHH-----
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW----- 105 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----- 105 (811)
+.....++.++......++.+.|.+.+++++.++|++++++..++.++...|+.++|...++++.+++|+++.++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 345666999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003548 106 -----------KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (811)
Q Consensus 106 -----------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 173 (811)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..|+++++.+|+++.++
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~ 184 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLR 184 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHH
Confidence 566778999999999999999999998887643 22233334456999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC--------------
Q 003548 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-------------- 239 (811)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------- 239 (811)
..+|.++...|++++|+..+++++...+.... ............+....+...+...+..++..
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~--aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA--AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHH--HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999875443221 11011111112222333333333333332111
Q ss_pred --CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHH--
Q 003548 240 --KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY-- 315 (811)
Q Consensus 240 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 315 (811)
...+.......|.++...|++++|+..|++++..+| +++.++..+|.++...|++++|+..|+++++. .|++..
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-~p~~~~~~ 340 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALAL-DPHSSNRD 340 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccchh
Confidence 111222223558899999999999999999999988 48899999999999999999999999999976 554331
Q ss_pred ------------HHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCC
Q 003548 316 ------------LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (811)
Q Consensus 316 ------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (811)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|++++..+|.+..
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 22455888999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccC
Q 003548 384 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCG 463 (811)
Q Consensus 384 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 463 (811)
++..++.+|. .++.++|+..+..+....... ... ....+..+.+..........
T Consensus 421 ------------a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~--~~~---~~~~l~~~~~~~~a~~~~~~-------- 474 (1157)
T PRK11447 421 ------------AVRGLANLYR-QQSPEKALAFIASLSASQRRS--IDD---IERSLQNDRLAQQAEALENQ-------- 474 (1157)
T ss_pred ------------HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH--HHH---HHHHhhhhHHHHHHHHHHHC--------
Confidence 7788888885 467899988876654332110 000 00000000000000000000
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHH
Q 003548 464 IRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL 543 (811)
Q Consensus 464 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 543 (811)
.....+.. .+... +-.+|++..+.+.++.++
T Consensus 475 -------g~~~eA~~------------------~~~~A------------------------l~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 475 -------GKWAQAAE------------------LQRQR------------------------LALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred -------CCHHHHHH------------------HHHHH------------------------HHhCCCCHHHHHHHHHHH
Confidence 00000000 00000 012345556777888888
Q ss_pred HhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCCC-ChhH---------HHHH
Q 003548 544 ASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPY-SLSA---------WNCY 613 (811)
Q Consensus 544 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~-~~~~---------~~~~ 613 (811)
...|++++|...++.++...+. .+ .. .+....+....++.++|...++.+...... .... ....
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~--~~---~~-~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN--DP---EQ-VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC--CH---HH-HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 8888888888888888754322 11 11 122222223457777787777665432111 1000 0011
Q ss_pred HHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 003548 614 YKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLA 693 (811)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~ 693 (811)
...+...++ ...+.++ ++.+|.++...+.+|.++...|++..|+..|.++++.+|+++-+.+.+|.+|...+
T Consensus 580 a~~l~~~G~----~~eA~~~----l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 580 ANRLRDSGK----EAEAEAL----LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHCCC----HHHHHHH----HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 112222222 2233333 34789988888999999999999999999999999999999999999999887432
Q ss_pred hCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCccccCC
Q 003548 694 LGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESG 773 (811)
Q Consensus 694 ~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~~~ 773 (811)
...+|+..+.+..+..|.+..+++++|+++...|.+..|+.+|+++++..|++.+.
T Consensus 652 ----------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~-------------- 707 (1157)
T PRK11447 652 ----------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS-------------- 707 (1157)
T ss_pred ----------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc--------------
Confidence 25678888888888888999999999999999999999999999999987653100
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003548 774 ESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 809 (811)
Q Consensus 774 ~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~ky~ 809 (811)
.-...+...+.-+|...|+++.|...+++-+
T Consensus 708 -----~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 708 -----MESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred -----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0013555677999999999999999988765
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-41 Score=337.69 Aligned_cols=509 Identities=18% Similarity=0.130 Sum_probs=441.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
...+..|...++.|+|.+|.+.+..+-..+|.+.+....++.++++..++++....-..+++.+|.-.+++.++|.++..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (811)
.|+++.|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc
Q 003548 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274 (811)
Q Consensus 195 ~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 274 (811)
+++...|...- +|.+||.++..+|+.-.|+..|++++.+ +|...++++++|.+|...+.++.|+..|.+++...
T Consensus 209 kAi~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 209 KAIETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99999998775 7999999999999999999999999999 89999999999999999999999999999999988
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003548 275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTL 354 (811)
Q Consensus 275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 354 (811)
| ....++-++|.+|.++|..+-|+..|+++++. .|..+.++.++|.++...|+..+|..+|.+++.+.|+++++..+|
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 8 59999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHH
Q 003548 355 ASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKV 434 (811)
Q Consensus 355 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 434 (811)
|.+|.++|++++|..+|..+++..|.-.. ++.+||.+|.++|++++|+..|+++++-.+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aa------------a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-------- 420 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAA------------AHNNLASIYKQQGNLDDAIMCYKEALRIKPT-------- 420 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhh------------hhhhHHHHHHhcccHHHHHHHHHHHHhcCch--------
Confidence 99999999999999999999999998654 8999999999999999999999887743211
Q ss_pred HhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhh
Q 003548 435 KVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQ 514 (811)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (811)
T Consensus 421 -------------------------------------------------------------------------------- 420 (966)
T KOG4626|consen 421 -------------------------------------------------------------------------------- 420 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHH
Q 003548 515 QEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFD 594 (811)
Q Consensus 515 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~ 594 (811)
--+.+.+++.++..+|+..+|++.+.+++.+.+. ...-..-++++...+|+..+|+.
T Consensus 421 -----------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt------~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 421 -----------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT------FAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred -----------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH------HHHHHhhHHHHhhccCCcHHHHH
Confidence 1224445667888899999999999999865443 33333344566678899999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhhcccccccch---hhHHHHHHHH--hcCCCCCch---hhhcchhhcccchHHHHH
Q 003548 595 CAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSK---HSKFIRYLRA--KYKDCVPPI---IISGHQFTMASHHQDAAR 666 (811)
Q Consensus 595 ~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~r~~~--~~~~~~~~~---~~~g~~~~~~~~y~~A~~ 666 (811)
.++..+...|+.++++.-+...+.-.++|.+...+ -...+.+++. +.|.-.|-+ +-+.|++...-.-++|--
T Consensus 478 sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~ 557 (966)
T KOG4626|consen 478 SYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANL 557 (966)
T ss_pred HHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhh
Confidence 99999999999999986555555556677643322 2334445553 345444322 223444433333345555
Q ss_pred HHHHHHhh
Q 003548 667 CYLEAYKL 674 (811)
Q Consensus 667 ~y~~a~~~ 674 (811)
.+.++..+
T Consensus 558 c~~~~~~~ 565 (966)
T KOG4626|consen 558 CLDKVHVL 565 (966)
T ss_pred hHHHHHhc
Confidence 55555544
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-41 Score=339.73 Aligned_cols=377 Identities=17% Similarity=0.155 Sum_probs=360.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
.|.-...+-..|+.+-..|++++|+..|+.++++.|+..++|..+|.++...|+.+.|..+|..+++++|....+...+|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 33444445559999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 189 (811)
.++...|+..+|..+|.++++..|....+|.++|.++..+|+...|+..|+++++++|...+++++||.+|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (811)
Q Consensus 190 ~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 269 (811)
+.+|.+++...|.+.. ++-++|.+|.++|..+-|+..|+++++. .|...+++.++|.++...|+..+|..+|.+
T Consensus 272 vs~Y~rAl~lrpn~A~--a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAV--AHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHhcCCcchh--hccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999886 7889999999999999999999999999 899999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHH
Q 003548 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (811)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (811)
++...| ..++...++|.++.+.|.+++|..+|.+++.. .|.-+.+..++|.+|.++|++++|+.+|+.++.+.|...+
T Consensus 346 aL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 346 ALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 999988 49999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
++.++|..|..+|+.+.|+++|.+++..+|.-++ ++.+||.+|...|+..+|+..|+..++--++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae------------AhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE------------AHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH------------HHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999998654 9999999999999999999999999875433
No 7
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-37 Score=325.32 Aligned_cols=608 Identities=17% Similarity=0.146 Sum_probs=492.5
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh--HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003548 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH--KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127 (811)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 127 (811)
+..|..+|..+-.++-....-+...+..+...|+. +.|...|..++...|++..++...|.+.+..|+|..|+.+|++
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 45677777777666665566667777777777776 8999999999999999999999999999999999999999999
Q ss_pred HHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Q 003548 128 AIRAEPKD-ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ---TARSIGILEEYLKVHPSD 203 (811)
Q Consensus 128 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~ 203 (811)
++.++|.. ++....+|.++.++|+.+.|+..|.++++++|.++.++..||.+-....+ +..+...+.++...+|.+
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 99999865 67788899999999999999999999999999999999999988766554 668999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHH
Q 003548 204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLIT 283 (811)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (811)
|. +++.|+.-++..|+|..+..+...++.. ....+.....++.+|.+|..+|++++|..+|.+++..++....-.++
T Consensus 270 P~--~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 270 PV--ALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred cH--HHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 97 7899999999999999999999999876 22334556779999999999999999999999999888765577789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003548 284 EVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK----ERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (811)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (811)
.+|..++..|+++.|..+|+++... .|++..+...+|.+|...+ ..+.|..+..++++..|.+.++|..++.++.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9999999999999999999999987 9999999999999999886 6789999999999999999999999999996
Q ss_pred HcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhh
Q 003548 360 EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRR 439 (811)
Q Consensus 360 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 439 (811)
.. +...++.+|..|++.-..... ...++++.++|..++..|++.+|...|..+.......
T Consensus 426 ~~-d~~~sL~~~~~A~d~L~~~~~-------~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~------------ 485 (1018)
T KOG2002|consen 426 QT-DPWASLDAYGNALDILESKGK-------QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV------------ 485 (1018)
T ss_pred hc-ChHHHHHHHHHHHHHHHHcCC-------CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh------------
Confidence 54 444447777777643222111 0124588999999999999999999998776442100
Q ss_pred cchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcC
Q 003548 440 LTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFR 519 (811)
Q Consensus 440 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (811)
... | +|
T Consensus 486 --------------~n~----------------------------------d--------e~------------------ 491 (1018)
T KOG2002|consen 486 --------------ANK----------------------------------D--------EG------------------ 491 (1018)
T ss_pred --------------cCc----------------------------------c--------cc------------------
Confidence 000 0 00
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHH
Q 003548 520 EPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYI 599 (811)
Q Consensus 520 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~ 599 (811)
.. -+..+-+++++++...+++++|.+.+...+...+. -...-++.. .++...+...+|...++..
T Consensus 492 --------~~-~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~--~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 492 --------KS-TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLG--CMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred --------cc-chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhh--HHHHhccCcHHHHHHHHHH
Confidence 00 12445677899999999999999999998864322 223333332 3344557788999999999
Q ss_pred HHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcC--CCCCchhhhcchhhcc------------cchHHHH
Q 003548 600 LQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYK--DCVPPIIISGHQFTMA------------SHHQDAA 665 (811)
Q Consensus 600 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~~g~~~~~~------------~~y~~A~ 665 (811)
+..+..++.+|.+++.......+|- ++.+-+.+.+++-. ++.+.++.+||+++.+ +.+..|+
T Consensus 557 l~~d~~np~arsl~G~~~l~k~~~~----~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 557 LNIDSSNPNARSLLGNLHLKKSEWK----PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HhcccCCcHHHHHHHHHHHhhhhhc----ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 9999999999999997776666642 55554444444322 4566778889987654 6889999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHH
Q 003548 666 RCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASY 745 (811)
Q Consensus 666 ~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~ 745 (811)
..|.++++.+|.|-++.++||+++.+.+ ....|...|.+.++.-.++..||.|+|++|...|++.+||+.
T Consensus 633 q~y~kvL~~dpkN~yAANGIgiVLA~kg----------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 633 QLYGKVLRNDPKNMYAANGIGIVLAEKG----------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHhcCcchhhhccchhhhhhhcc----------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998653 245688888888887677899999999999999999999999
Q ss_pred HHHHHcchhccCCCCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003548 746 YEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKD 807 (811)
Q Consensus 746 YekvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~k 807 (811)
|++||...-.. =+++...=|+-+|...|....|.+.+.+
T Consensus 703 Ye~~lkkf~~~-----------------------~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 703 YENCLKKFYKK-----------------------NRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHhccc-----------------------CCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999775321 1278888899999999988888776654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-36 Score=365.34 Aligned_cols=617 Identities=13% Similarity=0.055 Sum_probs=457.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH----------------HHHHHHHHHcCChHHHHHHHHHHHc
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETY----------------NTLGLAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~la~~~~~~g~~~~A~~~~~~a~~ 96 (811)
+...+...+.++...|++++|...++++++.+|+++.++ ..+|.++...|++++|+..|++++.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 345567788999999999999999999999999998764 5667789999999999999999999
Q ss_pred cCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003548 97 LSPKDSAL-WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (811)
Q Consensus 97 ~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 175 (811)
.+|.+... ...+..+....|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...+....+...
T Consensus 141 ~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~ 220 (1157)
T PRK11447 141 GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQL 220 (1157)
T ss_pred CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHH
Confidence 98887643 22223333456999999999999999999999999999999999999999999999998765443222111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADL------------------SVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
........+....+...+...+...|+.... .....+|.++...|++++|+..|++++..
T Consensus 221 ~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~-- 298 (1157)
T PRK11447 221 WYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA-- 298 (1157)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 1111122233444444444444444433210 02235588889999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH-------------HHHHHHHHHHHHcCChHHHHHHHHH
Q 003548 238 SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-------------DLITEVADTLMSLGHSNSALKYYHF 304 (811)
Q Consensus 238 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~ 304 (811)
.|....++..+|.++...|++++|+.+|++++..+|.... ......|.++...|++++|+..|++
T Consensus 299 --~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 299 --NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778899999999999999999999999999887764211 1223558888999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCC
Q 003548 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS 384 (811)
Q Consensus 305 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 384 (811)
++.. .|.++.++..+|.++...|++++|++.|+++++.+|++..++..++.++. .++.++|+.++++.....+....
T Consensus 377 Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~- 453 (1157)
T PRK11447 377 ARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID- 453 (1157)
T ss_pred HHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH-
Confidence 9987 88999999999999999999999999999999999999999999999885 46789999988765544322110
Q ss_pred CCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHH-HHhhhhcchhHHHHHHhhhcCCCCCccccC
Q 003548 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK-VKVKRRLTKGILQQRTKIYNNLPTDSILCG 463 (811)
Q Consensus 385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 463 (811)
..........+..+|.++...|++++|++.++++++..++.....-. ... .....
T Consensus 454 --~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~--------------~~~~G-------- 509 (1157)
T PRK11447 454 --DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD--------------LRQAG-------- 509 (1157)
T ss_pred --HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------HHHcC--------
Confidence 00001122356788999999999999999999988765432111000 000 00000
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHH
Q 003548 464 IRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL 543 (811)
Q Consensus 464 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 543 (811)
....+..... ..+ -..|++....+.++..+
T Consensus 510 --------~~~~A~~~l~------------------~al------------------------~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 510 --------QRSQADALMR------------------RLA------------------------QQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred --------CHHHHHHHHH------------------HHH------------------------HcCCCCHHHHHHHHHHH
Confidence 0000000000 000 01234455666677788
Q ss_pred HhhhcHHHHHHHHHHHHHhhhccCChhHH-------HHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHH
Q 003548 544 ASLQRYEEASEIINLSMRLAYNILPLEKK-------EELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (811)
Q Consensus 544 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~-------~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~ 616 (811)
...++.++|+..++.+.... ..+... ....+..+.+....|+.++|..+++ ..|.++..+..+..+
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~---~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQ---WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADW 612 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchh---cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHH
Confidence 88999999999887754211 011100 0111122334456788888887765 689999998888888
Q ss_pred HHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCc
Q 003548 617 LSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGF 696 (811)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r 696 (811)
+...++ ...+...+.+.+...|++..++..+|.++...|++..|+..|.++.+.+|+++.+...+|.++... +
T Consensus 613 ~~~~g~----~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~--g- 685 (1157)
T PRK11447 613 AQQRGD----YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL--G- 685 (1157)
T ss_pred HHHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC--C-
Confidence 877777 558899999999999999999999999999999999999999999999999999999999988632 2
Q ss_pred cccchHHHHHHHHHHHHHhHhhcCCCc------hhhHhHHHHHHHhchhHHHHHHHHHHHc
Q 003548 697 RLQNKHQCLAQGFAFLYNNLRLCEHSQ------EALYNIARACHHVGLVSLAASYYEKVLA 751 (811)
Q Consensus 697 ~~~~r~~~~~q~~~~l~~y~~~~~~~~------e~~yn~gr~~~~~g~~~~Ai~~YekvL~ 751 (811)
...+|+..+.+.....+.+. .++..+|+++...|.+..|+.+|++++.
T Consensus 686 -------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 -------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 25678888888877655433 4777899999999999999999999996
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.6e-33 Score=319.01 Aligned_cols=622 Identities=11% Similarity=0.035 Sum_probs=417.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 112 (811)
.+..+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..+++++..+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999988888766
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003548 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF--------YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (811)
Q Consensus 113 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 184 (811)
+++++|+..|+++++.+|++.+++..++.+ |.+.++..+++. .+.+...|........+..+|..+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 666655555555 3333333444556666699999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHH
Q 003548 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 263 (811)
++++|+..+.++.+..|.+.. ....++.+|.. +++ +++..+++. . ...+..++..++..+...|+.++|
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~---~----lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQ---G----IFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhch---h----cccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998865 57788998888 477 777777553 1 236778888999999999999999
Q ss_pred HHHHHHhhhcccc--cHHH-----------------------------HHHHHHHHHHHcCChHHHHHHHHHHhhccCCC
Q 003548 264 EILFADLQWKNAI--DHAD-----------------------------LITEVADTLMSLGHSNSALKYYHFLETNAGTD 312 (811)
Q Consensus 264 ~~~~~~~~~~~~~--~~~~-----------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 312 (811)
...+++.....+. .... ....++..+...+.++-+..+ +.. .|.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~ 341 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LAT-LPA 341 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcC-CCc
Confidence 9999885332211 1111 123335666677777755433 222 444
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhh
Q 003548 313 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWL 392 (811)
Q Consensus 313 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (811)
++. ....-......+.+.+|........+..|.+.++...++....+.|+.++|..+|+++....+ +.. .
T Consensus 342 ~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--------~ 411 (987)
T PRK09782 342 NEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG-DAR--------L 411 (987)
T ss_pred chH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc-ccc--------c
Confidence 443 222222333457888999999999888899999999999999999999999999999998733 222 1
Q ss_pred hHHHHHHHHHHHHhcCC---chhHHHhhhHhhhhhhhHHHHHHHHHhhhhcch--hHHHHHHhhhcCCCCCccccCCCCC
Q 003548 393 NEKIIMKLCHIYRAKGM---PEDFVDAIFPLVCESLCVEALRQKVKVKRRLTK--GILQQRTKIYNNLPTDSILCGIRPA 467 (811)
Q Consensus 393 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (811)
...+...++.+|..++. ..+++.+..++-.....+ . ..++.+ .........+...+.. .
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~al~~~p~~--------~ 475 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ--W------QSQLPGIADNCPAIVRLLGDMSPS--------Y 475 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH--H------HhhhhhhhhhHHHHHHhcccCCCC--------C
Confidence 22355589999999987 444444433232222100 0 000000 0000001111110000 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhh
Q 003548 468 APKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQ 547 (811)
Q Consensus 468 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 547 (811)
...... ....+.... ..+ +++.. + .+. +...|+.+. .+.++.++...|
T Consensus 476 ~~~a~~-----~LG~~l~~~-~~~----eAi~a---~---------~~A---------l~~~Pd~~~-~L~lA~al~~~G 523 (987)
T PRK09782 476 DAAAWN-----RLAKCYRDT-LPG----VALYA---W---------LQA---------EQRQPDAWQ-HRAVAYQAYQVE 523 (987)
T ss_pred CHHHHH-----HHHHHHHhC-CcH----HHHHH---H---------HHH---------HHhCCchHH-HHHHHHHHHHCC
Confidence 000000 000000000 000 00000 0 000 001122222 444566666778
Q ss_pred cHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhccccccc
Q 003548 548 RYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKH 627 (811)
Q Consensus 548 ~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 627 (811)
++++|...+++++...+. ...+ +..+.+....|+.+.|..+++.++...|.....+..+.......++ .
T Consensus 524 r~eeAi~~~rka~~~~p~------~~a~-~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr----~ 592 (987)
T PRK09782 524 DYATALAAWQKISLHDMS------NEDL-LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ----P 592 (987)
T ss_pred CHHHHHHHHHHHhccCCC------cHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC----H
Confidence 888888877776532111 1112 1222334466778788888888877777665544333222222244 3
Q ss_pred chhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHH
Q 003548 628 SKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQ 707 (811)
Q Consensus 628 ~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q 707 (811)
..+...+.+.++..|+ ...+..+|.++...|.+..|+..|.++++++|++|.+...+|.++.+.+ ...+
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G----------~~ee 661 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG----------DIAQ 661 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----------CHHH
Confidence 4677777777777775 5566677877788888888888888888888888888888887776432 2467
Q ss_pred HHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 708 GFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 708 ~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
++..+.+..++.|++.++++|+|.++..+|.+..|+.+|++|+++.|+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777888888888888888888888888888888888888888877765
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-32 Score=289.11 Aligned_cols=596 Identities=13% Similarity=0.089 Sum_probs=391.1
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC-HHHHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNF--EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAV 113 (811)
Q Consensus 37 ~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~ 113 (811)
++.++..+...|+. +.|...|.-+++..|++..+++..|.+.+..|+|..|+.+|.+++.++|.. ++....+|.|++
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW 210 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence 44445555555544 778888888888888887788888888888888888888888887777753 455667777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 114 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (811)
++|+.+.|+..|.++++++|.++.++..||.+-.... .+..++..+.++...+|.+|.++..|+..++..|+++.+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 8888888888888888888877777777777665544 3567777777788888888888888888888888888888
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 191 GILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGNMEKAEILFA 268 (811)
Q Consensus 191 ~~~~~~l~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 268 (811)
.+...++......+ ....++.+|..|..+|++++|..+|.+++.. .+.. .-.++.+|..++..|+++.|..+|+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 87777776542222 2235777888888888888888888877766 3333 5566777888888888888888888
Q ss_pred HhhhcccccHHHHHHHHHHHHHHcC----ChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Q 003548 269 DLQWKNAIDHADLITEVADTLMSLG----HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR- 343 (811)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 343 (811)
+++...| ++.+....+|.+|...+ ..+.|..++.+++.. .|.+..+|..++.++... +...++.+|..|+..
T Consensus 367 kv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 367 KVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHH
Confidence 8777777 47777777777777665 556777777777765 677788888888777644 444447777777744
Q ss_pred ----cCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCC-----CcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHH
Q 003548 344 ----FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL-----DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFV 414 (811)
Q Consensus 344 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 414 (811)
.+--++...++|..++..|++++|...|.+++.. +++... -+.....|++|.++...++++.|.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~-------~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK-------STNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc-------cchhHHHHHHHHHHHhhhhhhHHH
Confidence 2234677777888888888888888777766654 233321 012346778888888888888888
Q ss_pred HhhhHhhhhhhhHHHHHHHHHhhhhcc---hhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003548 415 DAIFPLVCESLCVEALRQKVKVKRRLT---KGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKE 491 (811)
Q Consensus 415 ~~~~~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 491 (811)
+.|+.+++.++.--+.+-+.....+.. .+.....+..+....
T Consensus 517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~----------------------------------- 561 (1018)
T KOG2002|consen 517 EMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS----------------------------------- 561 (1018)
T ss_pred HHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-----------------------------------
Confidence 888888777644221111110000000 000000000000000
Q ss_pred HHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhH
Q 003548 492 EKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEK 571 (811)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~ 571 (811)
.+|+ +.--++..+.+.....-|..-+...+.-... + ++.
T Consensus 562 ------------------------------------~np~---arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~-~D~ 600 (1018)
T KOG2002|consen 562 ------------------------------------SNPN---ARSLLGNLHLKKSEWKPAKKKFETILKKTST-K-TDA 600 (1018)
T ss_pred ------------------------------------CCcH---HHHHHHHHHHhhhhhcccccHHHHHHhhhcc-C-Cch
Confidence 0000 0000111111111111111111111100000 0 000
Q ss_pred HHHHHHHhhhhhh------------cccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 003548 572 KEELRSLGAKMAY------------DSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRA 639 (811)
Q Consensus 572 ~~~l~~l~~~~~~------------~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 639 (811)
.. +..++- +++ ..+-.+.|+.++.+++..+|.|..+-|-.+.|+...++| +.+...|.+...
T Consensus 601 Ys-liaLGN-~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~----~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 601 YS-LIALGN-VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF----SEARDIFSQVRE 674 (1018)
T ss_pred hH-HHHhhH-HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc----hHHHHHHHHHHH
Confidence 00 000000 000 112346799999999999999988878778888877774 478888888777
Q ss_pred hcCCCCCchhhhcchhhcccchHHHHHHHHHHHhh-CC-CChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHh
Q 003548 640 KYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKL-LP-ENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLR 717 (811)
Q Consensus 640 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~-~p-~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~ 717 (811)
.-.++.+.++.+||++...|+|..||.-|.++++. .| +++-+..+||-+++..+. ...+...+.+.++
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~----------~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK----------LQEAKEALLKARH 744 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHH
Confidence 76678888999999999999999999999999943 44 458899999999996653 5667888888899
Q ss_pred hcCCCchhhHhHHHHHHHhch
Q 003548 718 LCEHSQEALYNIARACHHVGL 738 (811)
Q Consensus 718 ~~~~~~e~~yn~gr~~~~~g~ 738 (811)
+.|++..+.||+|-+..+++.
T Consensus 745 ~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 745 LAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred hCCccchHHhHHHHHHHHHHH
Confidence 999999999999999888753
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.3e-32 Score=307.74 Aligned_cols=369 Identities=14% Similarity=0.102 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
..+...|+.++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..+|..+|.++..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44668899999999999999999999999996 78999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH------------------------------HHHHHHHHH-------------------
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDI------------------------------SLRIHLASF------------------- 145 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~------------------------------~~~~~la~~------------------- 145 (811)
+|++++|+..|..+...++.+. ..+..++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999987766554333211 111111111
Q ss_pred --------------H---HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 146 --------------Y---VEIGDYEKAAESYEQIQKLF---PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 146 --------------~---~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
+ ...+++++|+..|++++... |....++..+|.++...|++++|+..++++++.+|....
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 1 12357999999999999864 667789999999999999999999999999999998775
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHH
Q 003548 206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEV 285 (811)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 285 (811)
.+..+|.++...|++++|+..+++++.. .|....+++.+|.++...|++++|+..|++++..+|. +...+..+
T Consensus 367 --~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 367 --SYIKRASMNLELGDPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 7889999999999999999999999998 7788899999999999999999999999999999884 88889999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHH------HHHHH-HH
Q 003548 286 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR------LTLAS-LL 358 (811)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~-~~ 358 (811)
|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|++++++.|++...+ ...+. ++
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999976 899999999999999999999999999999999998753322 22233 33
Q ss_pred HHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 359 LEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 359 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
...|++++|++++++++..+|.+.. ++..+|.++...|++++|+..|.++++-.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~------------a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDI------------AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHH------------HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4479999999999999999887643 78899999999999999999999987654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=8e-30 Score=291.63 Aligned_cols=597 Identities=11% Similarity=0.006 Sum_probs=441.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHH--
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF-- 111 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-- 111 (811)
....+..|..++..|++++|+..++++++.+|++...+..++.+ +++++|+..|++++..+|++..++..++..
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhh
Confidence 44568889999999999999999999999999999988888776 999999999999999999999999999998
Q ss_pred ------HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 003548 112 ------AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CG 184 (811)
Q Consensus 112 ------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g 184 (811)
|.+.++..+++. .+.+..+|........+..+|..+|++++|+..+.++++..|.+......++.+|.. ++
T Consensus 154 ~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred ccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Confidence 666655555555 344444444555677779999999999999999999999999999999999999998 57
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChH--------------------
Q 003548 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL-------------------- 244 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------------------- 244 (811)
+ +++..+++..++ .++ .++..++..+...|+.++|...+++.-...+. .|.+.
T Consensus 232 ~-~~a~al~~~~lk---~d~--~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 232 D-DRLLALQSQGIF---TDP--QSRITYATALAYRGEKARLQHYLIENKPLFTT-DAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred H-HHHHHHhchhcc---cCH--HHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCccHHHHHHHHhccCchhhhccch
Confidence 7 888887664333 333 37889999999999999999999875433211 11111
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHH
Q 003548 245 ---------KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY 315 (811)
Q Consensus 245 ---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 315 (811)
.....+...+.+.++++-+..+ +...|. .+ ............+.+.+|...+..+... .|.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~ 377 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPA-NE-MLEERYAVSVATRNKAEALRLARLLYQQ-EPANLT 377 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCc-ch-HHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHH
Confidence 1222335556667777755543 222232 22 1222222234557888888888887754 699999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCC---HHHHHhhc------------------
Q 003548 316 LYLKLAECYLSLKERAHAIMFFYKALDRFED---NIDARLTLASLLLEEAK---EEEAITLL------------------ 371 (811)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~---~~~A~~~~------------------ 371 (811)
.+..++....+.|+.++|...|++++...++ +......++.+|...+. ..++..+.
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 9999999999999999999999999986332 23345588888888876 44444332
Q ss_pred -------CCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhH
Q 003548 372 -------SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGI 444 (811)
Q Consensus 372 -------~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 444 (811)
.+++...|.+ .+..+++.+|.++.. |+..+|+..+.+.+...+.. ..... .
T Consensus 458 ~~~~~~~~~al~~~p~~----------~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~-l-------- 515 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPS----------YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--WQHRA-V-------- 515 (987)
T ss_pred hhhHHHHHHhcccCCCC----------CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch--HHHHH-H--------
Confidence 2222222320 034588999999987 89999999888887665321 00000 0
Q ss_pred HHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCC
Q 003548 445 LQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLP 524 (811)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (811)
........ ....+..... +
T Consensus 516 ---A~al~~~G----------------r~eeAi~~~r---------------------------------k--------- 534 (987)
T PRK09782 516 ---AYQAYQVE----------------DYATALAAWQ---------------------------------K--------- 534 (987)
T ss_pred ---HHHHHHCC----------------CHHHHHHHHH---------------------------------H---------
Confidence 00000000 0000000000 0
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCC
Q 003548 525 NLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHP 604 (811)
Q Consensus 525 ~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p 604 (811)
++..+......+.++.++...|+.++|...++.++...+ +. ..+...........|++++|...++.++..+|
T Consensus 535 -a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-----~~-~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 535 -ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-----GD-NALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred -HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----cc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 000111112346778899999999999999999987432 21 22222222222345999999999999999999
Q ss_pred CChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHH
Q 003548 605 YSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLC 684 (811)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~ 684 (811)
+ ...|..+..++.+.++ ...+..++.+.+...|++...+..+|.++...|.++.|+..|.+|++++|++|.+.+.
T Consensus 608 ~-~~a~~~LA~~l~~lG~----~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 608 S-ANAYVARATIYRQRHN----VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred C-HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6 8899888888888877 5588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 685 VGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 685 la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
+|+++...+ ....|+.++.+..++.|++..+.+-.|.+...-..+..|.+.|++...+.|+
T Consensus 683 LA~al~~lG----------d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 683 LAYVNQRLD----------DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHCC----------CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999997433 3678999999999999999999999999999999999999999999999865
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.5e-29 Score=281.52 Aligned_cols=336 Identities=13% Similarity=0.041 Sum_probs=279.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003548 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (811)
Q Consensus 68 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 147 (811)
+..+..+|..++..|++++|+..|.+++...|+ +..+.++|.+|..+|++++|+..+.++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999996 7889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH---------------------
Q 003548 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--------------------- 206 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------------------- 206 (811)
.+|++++|+..|..+....+.+......+...... ..+...+...++..|.+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999999988877665443322111111111 12223333333333332110
Q ss_pred ----------HHHHHHHHHH---HHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 003548 207 ----------SVIDLLVAIL---MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (811)
Q Consensus 207 ----------~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 273 (811)
..+..++... ...+++++|+..|++++.. ....+....++..+|.++...|++++|+..|++++..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0122333222 2236899999999999976 2223566778999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHH
Q 003548 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (811)
+| .....+..+|.++...|++++|+..|++++.. .|+++.+++.+|.++...|++++|+.+|+++++++|++..++..
T Consensus 361 ~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 DP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 88 48889999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhh
Q 003548 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (811)
Q Consensus 354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 423 (811)
+|.++...|++++|+..|++++...|.++. ++..+|.++...|++++|+..|.++++.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~------------~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPD------------VYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998654 8899999999999999999999888754
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.6e-29 Score=284.19 Aligned_cols=340 Identities=14% Similarity=0.059 Sum_probs=316.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
..+..-+..+...|++++|..+++.++...|+++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33555677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (811)
.|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR 201 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887764 4889999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHh
Q 003548 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK----AEILFADL 270 (811)
Q Consensus 195 ~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~ 270 (811)
+++..+|.... .....++.++...|++++|+..+++++.. .|....++..+|.++...|++++ |+..|+++
T Consensus 202 ~~l~~~~~~~~-~~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 202 ALLPFFALERQ-ESAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHhcCCCcch-hHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99988764433 24456788999999999999999999998 67788999999999999999986 89999999
Q ss_pred hhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHH
Q 003548 271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 350 (811)
Q Consensus 271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 350 (811)
+...|. ++.++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++++..+|++..+
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 999884 8899999999999999999999999999987 89999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC
Q 003548 351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (811)
Q Consensus 351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (811)
+..++.++...|++++|+..|++++...|...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88889999999999999999999999999864
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=4.5e-28 Score=272.44 Aligned_cols=341 Identities=10% Similarity=0.026 Sum_probs=309.3
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003548 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (811)
Q Consensus 66 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 145 (811)
++..-....+..+...|++++|+..+...+...|.++.++..++.+....|++++|+..+++++..+|+++.++..+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34455667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHH
Q 003548 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (811)
Q Consensus 146 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A 225 (811)
+...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++...|+++. .+..++ .+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~--a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD--MIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH--HHHHHH-HHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999998775 444443 47889999999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHH----HHHH
Q 003548 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS----ALKY 301 (811)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~ 301 (811)
+..+++++...+ .........++.++...|++++|+..+++++...| +++.++..+|.++...|++++ |+..
T Consensus 197 ~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 197 HDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999887622 12233445668889999999999999999999887 488999999999999999996 8999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCccc
Q 003548 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (811)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (811)
|++++.. .|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..|++++..+|..
T Consensus 273 ~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 273 WRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999987 899999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
.. ....+|.++...|++++|+..|.++++..++
T Consensus 352 ~~------------~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 352 SK------------WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred hH------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 32 5566789999999999999999999887644
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-28 Score=238.91 Aligned_cols=339 Identities=17% Similarity=0.163 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
+..+-.+|+.+|+.|+|++||++|.++|...|+.+..|.+++-||...|++++.++...++++++|+...++++.+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHH------------------HHHHH--------------cCCC---------------------------
Q 003548 114 QKGDTAQAMYYI------------------RQAIR--------------AEPK--------------------------- 134 (811)
Q Consensus 114 ~~g~~~~A~~~~------------------~~al~--------------~~p~--------------------------- 134 (811)
.+|++++|+.-. ++.++ ..|.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999988875432 11111 0000
Q ss_pred -----------------------------------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003548 135 -----------------------------------------D---------ISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (811)
Q Consensus 135 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 164 (811)
+ ..++...|..++-.|++-.|.+.|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1 22344556667778899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChH
Q 003548 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244 (811)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 244 (811)
++|.++..+..++.+|...++.++-...|.++.+++|.+++ +|+..|.+++-++++++|+.-|++++.+ .|.+.
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~ 428 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISL----DPENA 428 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhc----Chhhh
Confidence 99999999999999999999999999999999999999998 7999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC------CHHHHH
Q 003548 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYL 318 (811)
Q Consensus 245 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 318 (811)
..+..++.+.+++++++++...|+.++...|. .++++...|.++..++++++|++.|+.++.+ .|. ++..+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhh
Confidence 99999999999999999999999999999994 9999999999999999999999999999987 555 444444
Q ss_pred HHHHHHH-HhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcc
Q 003548 319 KLAECYL-SLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 319 ~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (811)
.-|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|+++..+...
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4444333 3589999999999999999999999999999999999999999999987765443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6.5e-27 Score=269.01 Aligned_cols=369 Identities=14% Similarity=0.094 Sum_probs=305.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHH
Q 003548 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121 (811)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 121 (811)
.++...|++++|+..+.++...+|..+.++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35677899999999999988888888888999999999999999999999999999999888888999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-----------
Q 003548 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI----------- 190 (811)
Q Consensus 122 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~----------- 190 (811)
+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|+
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 9999999999998888 8888999999999999999999999999999888888888877666655444
Q ss_pred -----------------------------------HHHHHHHhhCCCCCCHH-----HHHH-HHHHHHHcccHHHHHHHH
Q 003548 191 -----------------------------------GILEEYLKVHPSDADLS-----VIDL-LVAILMENNAYEKTLQHI 229 (811)
Q Consensus 191 -----------------------------------~~~~~~l~~~p~~~~~~-----~~~~-l~~~~~~~g~~~~A~~~~ 229 (811)
..++.+++..|.++... +... ++ .+...|++++|+..|
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHH
Confidence 44444554434443311 1111 33 346779999999999
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 230 EHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID---HADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 230 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
++++.. + .+.+..+...++.++...|++++|+.+|++++...|.. .......++.++...|++++|+..++++.
T Consensus 261 ~~ll~~-~--~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 261 QRLKAE-G--QIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHhhcc-C--CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 998876 2 12233445557999999999999999999988766532 13567778888999999999999999988
Q ss_pred hccCC-------------C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhc
Q 003548 307 TNAGT-------------D--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371 (811)
Q Consensus 307 ~~~~~-------------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 371 (811)
.. .| + ...++..+|.++...|++++|++.+++++...|+++.++..+|.++...|++++|++.+
T Consensus 338 ~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 65 33 2 24577889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHH
Q 003548 372 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVE 428 (811)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 428 (811)
++++..+|++.. +++.+|.++...|++++|...+..+++..++..
T Consensus 417 ~~al~l~Pd~~~------------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 417 KKAEVLEPRNIN------------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhhCCCChH------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999998754 889999999999999999999999998876543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=3.6e-26 Score=262.87 Aligned_cols=441 Identities=14% Similarity=0.052 Sum_probs=345.4
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003548 54 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (811)
Q Consensus 54 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 133 (811)
+..++. -...|-++........+....|+.++|+..+.++...+|....++..+|.++...|++++|+..++++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 4566777888888888999999999999999999988999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003548 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLV 213 (811)
Q Consensus 134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~ 213 (811)
.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++.. ++..++
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~--~~~~la 157 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ--YPTEYV 157 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999999876 677899
Q ss_pred HHHHHcccHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHH-----HcCCH---HHHHHHHHHhhhc---ccccH---
Q 003548 214 AILMENNAYEKTLQHIEHAQIVRFSG-KELPLKLKVKAGICYL-----RLGNM---EKAEILFADLQWK---NAIDH--- 278 (811)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la~~~~-----~~g~~---~~A~~~~~~~~~~---~~~~~--- 278 (811)
.++...+..++|+..++++... |.. ..........+..... ..+++ ++|+..++.++.. +|...
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~-p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLT-PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 9999999999999999876541 110 0000111222222222 22334 7889999988754 33221
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC----HHHHHHH
Q 003548 279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN----IDARLTL 354 (811)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 354 (811)
..+.......+...|++++|+..|++++....+....+...+|.+|..+|++++|+..|+++++.+|.+ ......+
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 222333233456789999999999999876322222344446999999999999999999999988866 4667788
Q ss_pred HHHHHHcCCHHHHHhhcCCCCCCCcccCCC-----CCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHH
Q 003548 355 ASLLLEEAKEEEAITLLSPPKDLDSLDMNS-----DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEA 429 (811)
Q Consensus 355 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 429 (811)
+.++.+.|++++|+..++++....|..... ..++.. ...+...++.++...|++++|++.+.+++...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~--~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----- 389 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD--WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA----- 389 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 889999999999999999999887743210 011111 23477889999999999999999887765332
Q ss_pred HHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 003548 430 LRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDT 509 (811)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (811)
T Consensus 390 -------------------------------------------------------------------------------- 389 (765)
T PRK10049 390 -------------------------------------------------------------------------------- 389 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCc
Q 003548 510 DDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDP 589 (811)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~ 589 (811)
|++..+.+.++.++...|++++|++.++.++...+. ...+....+.++...+++
T Consensus 390 --------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd------~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 390 --------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR------NINLEVEQAWTALDLQEW 443 (765)
T ss_pred --------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCCH
Confidence 244567778889999999999999999999874322 223444455566778899
Q ss_pred cchHHHHHHHHHhCCCChhHHHH
Q 003548 590 NHGFDCAKYILQLHPYSLSAWNC 612 (811)
Q Consensus 590 ~~a~~~~r~~~~~~p~~~~~~~~ 612 (811)
+.|...++.++...|+++.+..+
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999876543
No 19
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=5.6e-24 Score=250.67 Aligned_cols=361 Identities=14% Similarity=0.114 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCC------------
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLS-PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP------------ 99 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------------ 99 (811)
...........+...|++++|..+|..+.... +.+...+..+...+...+..+.|...+..++...+
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 33334444567788899999999998887742 23444454454445555555555555555444332
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-----------------------
Q 003548 100 --------------------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--EPK----------------------- 134 (811)
Q Consensus 100 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~----------------------- 134 (811)
.+...|..+...|.+.|++++|+..|.++... .|+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 23334444444555555555555555444331 121
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Q 003548 135 -----------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--HP 201 (811)
Q Consensus 135 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p 201 (811)
+...+..+...|.+.|++++|...|+++.. .+...|..+...|.+.|++++|+.+|.++... .|
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 111223333444444444444444444321 12334444444444444444444444444332 12
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHH
Q 003548 202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL 281 (811)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 281 (811)
+.. ++..+...+...|+.+.|.+++..+.+. + ...+..++..+...|.+.|++++|..+|+++.. .+...
T Consensus 287 d~~---ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 287 DLM---TITSVISACELLGDERLGREMHGYVVKT-G--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred Chh---HHHHHHHHHHhcCChHHHHHHHHHHHHh-C--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence 211 3444444444444444444444444332 1 223344555555555566666666666555432 13344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 003548 282 ITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLE 360 (811)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 360 (811)
|..+...|.+.|++++|+.+|+++.......+...+..+-..+...|++++|.+.+..+.+... .+..++..|...|.+
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 5555555666666666666665554433333444444444455555666666666655555432 234455556666666
Q ss_pred cCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhh
Q 003548 361 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (811)
Q Consensus 361 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 421 (811)
.|++++|.++|+++.+.+.. .+..+...|...|+.++|+..|.+|+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~v---------------s~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVI---------------SWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred cCCHHHHHHHHHhCCCCCee---------------eHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666555432211 34555555666666666666665554
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=1.2e-23 Score=236.22 Aligned_cols=388 Identities=13% Similarity=0.064 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
.|..+...+.+|.+.++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-.|........+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34466678999999999999999999999999999998655558889999999999999999999944455555566668
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 189 (811)
.++...|++++|+..|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHH
Confidence 899999999999999999999999999999999999999999999999999999999986554 5667777667888789
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHc---------C--
Q 003548 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL---------G-- 258 (811)
Q Consensus 190 ~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~---------g-- 258 (811)
+..++++++.+|++.+ .+..+..++...|-...|.+...+--..+. ......+....+.-..+. +
T Consensus 189 L~~~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 189 LQASSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 9999999999999986 678889999999999999887766433321 011111111111112211 1
Q ss_pred -CHHHHHHHHHHhhh---ccccc---HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHH
Q 003548 259 -NMEKAEILFADLQW---KNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA 331 (811)
Q Consensus 259 -~~~~A~~~~~~~~~---~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 331 (811)
-.+.|+..++.++. ..|+. ...+....-.++...|++.++++.|+.+.....+--+.+....|..|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 23556777777665 33432 233456677788899999999999999886544556678889999999999999
Q ss_pred HHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC-----CCCCCChhhhhHHHHHHH
Q 003548 332 HAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM-----NSDKSNPWWLNEKIIMKL 400 (811)
Q Consensus 332 ~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~l 400 (811)
+|+..|+.++...| .+......|...|...+++++|..++++..+..|... ....+++-|. +....+
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~ 422 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLL 422 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHH
Confidence 99999999988653 2444467889999999999999999999887666210 1134566675 477778
Q ss_pred HHHHHhcCCchhHHHhhhHhhhhh
Q 003548 401 CHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 401 a~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
+.++.-.|+..+|.+.++.++...
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888889999999998888776443
No 21
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=3.3e-23 Score=244.11 Aligned_cols=620 Identities=12% Similarity=0.068 Sum_probs=422.5
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Q 003548 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK-DISLRIHL 142 (811)
Q Consensus 65 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 142 (811)
+..+..+..+...+...|++++|...|..+.... +.+...+..+...+...+.++.|...+..+++..+. +......+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3456677888889999999999999999988753 445667778888888999999999999999987653 34566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcc
Q 003548 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--HPSDADLSVIDLLVAILMENN 220 (811)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~l~~~~~~~g 220 (811)
...|.+.|+.+.|...|+++. +.+...|..+...|.+.|++++|+..|+++... .|+.. ++..+...+...+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~---t~~~ll~~~~~~~ 201 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY---TFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh---HHHHHHHHhCCcc
Confidence 888999999999999999874 346788999999999999999999999998864 34433 6778888888899
Q ss_pred cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHH
Q 003548 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (811)
Q Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (811)
++..+.+.+..++.. + ...+..++..+...|.+.|++++|...|+++.. .+...|..+...|.+.|++++|+.
T Consensus 202 ~~~~~~~~~~~~~~~-g--~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 202 DLARGREVHAHVVRF-G--FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred chhhHHHHHHHHHHc-C--CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999888765 2 344567788889999999999999999999853 356789999999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCc
Q 003548 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 379 (811)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 379 (811)
+|.++.......+...+..+...+...|+.+.|.+.+..+.+.. +.+..++..+...|.+.|++++|.++|+++...+.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 99999877666788888888899999999999999999998764 34688899999999999999999999998865332
Q ss_pred ccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHH--HHHHhhhhcc--hhHHHHHHhhhcCC
Q 003548 380 LDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR--QKVKVKRRLT--KGILQQRTKIYNNL 455 (811)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~l~--~~~~~~~~~~~~~~ 455 (811)
..+..+...|.+.|++++|+++|..|.+.++.++... .-........ +.............
T Consensus 355 ---------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 355 ---------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred ---------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 2678999999999999999999999988765443211 1010000000 00000000000000
Q ss_pred --CCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhH
Q 003548 456 --PTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQ 533 (811)
Q Consensus 456 --~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 533 (811)
+...+++.+...+.+.+. .+ .....|....- ++..-|
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~----------------~~---------------------~A~~vf~~m~~----~d~vs~ 458 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKC----------------ID---------------------KALEVFHNIPE----KDVISW 458 (857)
T ss_pred CCcchHHHHHHHHHHHHcCC----------------HH---------------------HHHHHHHhCCC----CCeeeH
Confidence 000000000000000000 00 00000000000 111222
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHh-CCCChhHHHH
Q 003548 534 CLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-HPYSLSAWNC 612 (811)
Q Consensus 534 ~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~-~p~~~~~~~~ 612 (811)
..++ ..+...|+.+||+.+++.+.. . ..|+ ...+..+.. .+...|+.+.+..+...++.. ...+....+.
T Consensus 459 ~~mi---~~~~~~g~~~eA~~lf~~m~~--~--~~pd-~~t~~~lL~-a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 459 TSII---AGLRLNNRCFEALIFFRQMLL--T--LKPN-SVTLIAALS-ACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred HHHH---HHHHHCCCHHHHHHHHHHHHh--C--CCCC-HhHHHHHHH-HHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 3333 366677777777777777763 1 1222 222232332 233557777777777666654 3334445555
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHh--hCCCChHHHHHHHHHHH
Q 003548 613 YYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK--LLPENPLINLCVGSALI 690 (811)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~--~~p~~p~~~l~la~a~~ 690 (811)
+..++.+.|+ ...+.+.+.+. +.+...+-.+-..+...|..+.|+..|.+..+ ..|+.......| .++.
T Consensus 530 Li~~y~k~G~----~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~ 600 (857)
T PLN03077 530 LLDLYVRCGR----MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS 600 (857)
T ss_pred HHHHHHHcCC----HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHh
Confidence 6666666666 33555555443 33333444444556778899999999998775 567654322222 2333
Q ss_pred HHHhCccccchHHHHHHHHHHHHHhHhhcC--CCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCc
Q 003548 691 NLALGFRLQNKHQCLAQGFAFLYNNLRLCE--HSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPD 768 (811)
Q Consensus 691 ~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~--~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~ 768 (811)
+...+.+|..+|.+-.+..+ .+.+.|..+..+|...|..++|.+.+++. .+.|+
T Consensus 601 ----------~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------------- 656 (857)
T PLN03077 601 ----------RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD------------- 656 (857)
T ss_pred ----------hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-------------
Confidence 23458889998887764332 24578888999999999999999998874 22221
Q ss_pred cccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003548 769 LMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDY 808 (811)
Q Consensus 769 ~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~ky 808 (811)
...+.+.. -.|+..||.++|+.+.++-
T Consensus 657 ----------~~~~~aLl---~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 657 ----------PAVWGALL---NACRIHRHVELGELAAQHI 683 (857)
T ss_pred ----------HHHHHHHH---HHHHHcCChHHHHHHHHHH
Confidence 01244444 4567889999988877654
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=9.9e-23 Score=215.92 Aligned_cols=338 Identities=19% Similarity=0.205 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
..+...|...+..|++++|...+..++..+|.++.+|..||.+|.++|+.+++..+.-.|..++|.+.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcccHHH
Q 003548 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAYEK 224 (811)
Q Consensus 149 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~~l~~~~~~~g~~~~ 224 (811)
+|++.+|.-+|.++++.+|.+.......+.+|.+.|+...|+..+.+++...|.. ++ ......+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999832 21 123345777788888899
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----ccc-----------------------cc
Q 003548 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW----KNA-----------------------ID 277 (811)
Q Consensus 225 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~-----------------------~~ 277 (811)
|++.+..++.... .......+..++.+++...+++.|......... .++ +.
T Consensus 299 a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 299 AAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999887411 333445566788899999999999887766433 000 00
Q ss_pred HHH-HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC-CHHHHHHHH
Q 003548 278 HAD-LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-NIDARLTLA 355 (811)
Q Consensus 278 ~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 355 (811)
+.. +...++.+..+.++..+++..+.........+++..+..++.++...|++.+|+.+|..+....+. +..+|+.+|
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 112 255556666677777777777654433334568889999999999999999999999999987664 578999999
Q ss_pred HHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhh
Q 003548 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (811)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 421 (811)
.+|..+|.+++|++.|++++...|++.+ +...|+.+|.++|+.++|++.+.++.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D------------~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLD------------ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchh------------hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999876 88999999999999999999998876
No 23
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=9.3e-24 Score=242.66 Aligned_cols=465 Identities=12% Similarity=0.068 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASFY 146 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 146 (811)
.|..+...+...|++++|+..|..+....+ -+...+..+...+...++++.|...+..+.+.. ..+..++..+...|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 566666667777778888877777665432 345667777777777778877777777776632 12456677777888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHH
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 226 (811)
.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|+.+|+++.+..+.. +..++..+...+...|....+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHHH
Confidence 888888888888877643 255677778888888888888888888877654332 2235667777777788888887
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
+++..+.+. + ...+..++..+...|.+.|++++|...|+.+.. .+...|..+...|.+.|++++|+.+|+++.
T Consensus 245 ~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 245 QLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777766654 2 233455667777888888888888888877632 356678888888888888888888888877
Q ss_pred hccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCC
Q 003548 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSD 385 (811)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 385 (811)
......+...+..+..++.+.|++++|.+.+..+++.. +.+..++..|...|.+.|+.++|.++|+++.+.+.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~------ 391 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL------ 391 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe------
Confidence 65555677778888888888888888888888887775 55667778888888888888888888887764322
Q ss_pred CCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCC
Q 003548 386 KSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIR 465 (811)
Q Consensus 386 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (811)
.++..++..|.+.|+.++|+++|.+|.+.+..++ ..+|.++.
T Consensus 392 ---------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-----------------------------~~T~~~ll 433 (697)
T PLN03081 392 ---------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-----------------------------HVTFLAVL 433 (697)
T ss_pred ---------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----------------------------HHHHHHHH
Confidence 1567788888888888888888888876653321 11222222
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHh
Q 003548 466 PAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALAS 545 (811)
Q Consensus 466 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 545 (811)
..+.+.+........+..+. ...++.++..++.++++ +|++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~------------------------------------~~~g~~p~~~~y~~li~---~l~r 474 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMS------------------------------------ENHRIKPRAMHYACMIE---LLGR 474 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHH------------------------------------HhcCCCCCccchHhHHH---HHHh
Confidence 22233322221111110000 00112345567888877 9999
Q ss_pred hhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhccccc
Q 003548 546 LQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINS 625 (811)
Q Consensus 546 ~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 625 (811)
.|+.+||.++++.+. ..++ ...+..+...|+ ..|+.+.|...++.++...|.+...|.++..++.+.|+|.
T Consensus 475 ~G~~~eA~~~~~~~~------~~p~-~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~- 545 (697)
T PLN03081 475 EGLLDEAYAMIRRAP------FKPT-VNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA- 545 (697)
T ss_pred cCCHHHHHHHHHHCC------CCCC-HHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH-
Confidence 999999999988764 1222 334555555554 5699999999999999999999999999999999999864
Q ss_pred ccchhhHHHHHHHHh
Q 003548 626 KHSKHSKFIRYLRAK 640 (811)
Q Consensus 626 ~~~~~~~~~~r~~~~ 640 (811)
.+.+.+..+.++
T Consensus 546 ---~A~~v~~~m~~~ 557 (697)
T PLN03081 546 ---EAAKVVETLKRK 557 (697)
T ss_pred ---HHHHHHHHHHHc
Confidence 677777766554
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.7e-25 Score=216.01 Aligned_cols=334 Identities=16% Similarity=0.132 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
..+-..|.-++..|+|++|+.+|..|+.+.|+.+..+.+++.||...|+|++.++...++++++|+...+++.++..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH------------------HHHHHh--------------CCCC---------------------------
Q 003548 149 IGDYEKAAESY------------------EQIQKL--------------FPDN--------------------------- 169 (811)
Q Consensus 149 ~g~~~~A~~~~------------------~~~l~~--------------~p~~--------------------------- 169 (811)
+|++.+|+.-. ++.++. .|.-
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 99988876421 121110 0000
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 170 --------------------------------------------------VDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 170 --------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
..++...|..++-.|++-.|...++.++++
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 012233344555667777777778888887
Q ss_pred CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH
Q 003548 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (811)
Q Consensus 200 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (811)
+|.+.. .+..++.+|....+.++....|.++..+ +|.++++++..|.+++-++++++|+.-|++++..+| ++.
T Consensus 356 ~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~ 428 (606)
T KOG0547|consen 356 DPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENA 428 (606)
T ss_pred Ccccch--HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhh
Confidence 777765 4667778888888888888888888777 677777888888888888888888888888887777 377
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC------CHHHHHH
Q 003548 280 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------NIDARLT 353 (811)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~ 353 (811)
-.+..++.+.+++++++++...|+.++.. .|..++++...|.++..++++++|++.|.+++++.|. ++..+..
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 77788888888888888888888887765 7788888888888888888888888888888888777 4444444
Q ss_pred HHHHHH-HcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhh
Q 003548 354 LASLLL-EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVC 422 (811)
Q Consensus 354 la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 422 (811)
-|.+.. -.+++..|+++++++++.+|.... ++..+|.+..++|+.++|+++|++.+.
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~------------A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQ------------AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333322 237788888888888888887543 889999999999999999999987653
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.8e-25 Score=226.00 Aligned_cols=308 Identities=17% Similarity=0.130 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
+...++++......-+..+|+..|.+.-...++...+...+|..|+.+++|++|..+|+.+-...|--....-....+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 33445566666667777788888888666677777777788888888888888888888888777766655555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (811)
Q Consensus 114 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (811)
.+.+.-+--...+..++.+|+.|+.|-.+|.+|.-+++++.|+++|+++++++|...-++..+|.-+.....++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 66554444445566677777788888888888888888888888888888888877777777777777777888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 003548 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (811)
Q Consensus 194 ~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 273 (811)
+.++..+|.+.. +|+.+|.+|.++++++.|.-.|++|+++ .|.+..+...+|.++.+.|+.++|+.++++++..
T Consensus 479 r~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 479 RKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred HhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 888877777765 6778888888888888888888888777 6777777777777777777777777777777777
Q ss_pred ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHH
Q 003548 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (811)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (811)
+|. ++-..+..|.+++..+++++|+..++++.+. .|++..+++.+|.+|.++|+.+.|+..|.-|..++|.-.+
T Consensus 553 d~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 553 DPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 764 6677777777777777777777777777765 6777777777777777777777777777777777775433
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=2.2e-21 Score=224.25 Aligned_cols=374 Identities=13% Similarity=0.097 Sum_probs=316.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSP--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
.+..-..+.+.|++++|+.+|+++...+. .+...+..+...+...|..++|..++..... | +...|..+...+..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 34444557789999999999999987653 2444555667778889999999999987765 4 57788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARSIGI 192 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 192 (811)
.|+++.|...+.++.+... .+...+..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|+.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999988653 4677899999999999999999999999988654 3788999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003548 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (811)
Q Consensus 193 ~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 272 (811)
|+.+.+..-. ++..+|+.+...+.+.|++++|.+++.++... ......+...+..+..+|.+.|++++|..+|+.+..
T Consensus 530 f~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 530 YGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999765322 23347999999999999999999999998763 111234567788899999999999999999999988
Q ss_pred cccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCHHHH
Q 003548 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDAR 351 (811)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 351 (811)
.+...+...|..+...|.+.|++++|+.+|..+.......+...|..+...|.+.|++++|.+.++.+.+.. +.+...+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 776668899999999999999999999999999877666778899999999999999999999999999874 4578899
Q ss_pred HHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
..+...|.+.|++++|.++|+++...... ++...+..+...|.+.|++++|.++|..|.+.++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~-----------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLR-----------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999987543221 13457899999999999999999999999876543
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=4.7e-21 Score=221.44 Aligned_cols=369 Identities=14% Similarity=0.087 Sum_probs=317.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhcCCHHH
Q 003548 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~ 120 (811)
..+...|..++|..+++.+.. | +...|..+-.++...|++++|...|..+..... .+...|..+...|.+.|++++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 446678999999999988764 4 567888999999999999999999999987653 467889999999999999999
Q ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 121 AMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (811)
Q Consensus 121 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 198 (811)
|...|+++.+... .+...|..+...|.+.|++++|+..|..+..... .+..+|..+...|.+.|++++|.++++++..
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999988653 3678999999999999999999999999976532 3578899999999999999999999999976
Q ss_pred h-CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccccc
Q 003548 199 V-HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277 (811)
Q Consensus 199 ~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (811)
. .+-.++..++..+...|.+.|++++|.++|+.+.+. + .+.....+..+...|.+.|++++|..+|+++.......
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 3 222333447899999999999999999999999876 1 34566788999999999999999999999998775545
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCHHHHHHHHH
Q 003548 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLAS 356 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 356 (811)
+...+..+...+.+.|++++|.++++.+.+...+.+..++..+..+|.+.|++++|.+.|+++.+.. ..+...|..+..
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7788999999999999999999999999987677889999999999999999999999999987642 236788999999
Q ss_pred HHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhH
Q 003548 357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (811)
Q Consensus 357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 427 (811)
.|.+.|++++|.++|+++...... ++...+..+..++.+.|++++|.+++..|++.++.+
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~-----------Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLC-----------PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999987654321 234578888899999999999999999999887553
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=4.3e-20 Score=188.20 Aligned_cols=607 Identities=14% Similarity=0.113 Sum_probs=454.0
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003548 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127 (811)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 127 (811)
++..+|..+++.+.+.+|.++..|..-+..-...|++..|.....+..+..|.+.++|..-+. +...+.|....-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999987654 4566779999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHH
Q 003548 128 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 207 (811)
Q Consensus 128 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 207 (811)
++...|.++..|+.-+.+-... ..=..+++++++..|++...|... ....+.+.|..++.++++..|.+.+
T Consensus 341 Avr~~P~Sv~lW~kA~dLE~~~---~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~d-- 411 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADLESDT---KNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMD-- 411 (913)
T ss_pred HHHhCCCChhhhhhHHhhhhHH---HHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHH--
Confidence 9999999999988877765443 334567889999999998877543 3566777899999999999998775
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc----ccccHHHHHH
Q 003548 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK----NAIDHADLIT 283 (811)
Q Consensus 208 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 283 (811)
.|..++. +.-|+.|..++.++.+. -|....+|...+.+-...|+.+....++.+.+.. ...-+-+.|.
T Consensus 412 LwlAlar----LetYenAkkvLNkaRe~----iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 412 LWLALAR----LETYENAKKVLNKAREI----IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 4555444 55689999999999998 7888899999999999999999998888886543 2233667788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 003548 284 EVADTLMSLGHSNSALKYYHFLETN--AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361 (811)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 361 (811)
.-|..+...|-.-.+..+...++.. ...+.-..|..-+..+.+.+-++-|+..|..+++.+|.....|...+.+-...
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence 8888888888887777777766654 34556778999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcc
Q 003548 362 AKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLT 441 (811)
Q Consensus 362 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 441 (811)
|..++-..+|+++....|.... .++..+.-++..|+...|..++..+++..+..+..
T Consensus 564 gt~Esl~Allqkav~~~pkae~------------lwlM~ake~w~agdv~~ar~il~~af~~~pnseei----------- 620 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEI------------LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI----------- 620 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchh------------HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH-----------
Confidence 9999999999999999997654 67888889999999999999999988776543221
Q ss_pred hhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCC
Q 003548 442 KGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREP 521 (811)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (811)
+-...++..... + -.|.+.++.+- +.
T Consensus 621 ---wlaavKle~en~---------------e---~eraR~llaka--------------------------------r~- 646 (913)
T KOG0495|consen 621 ---WLAAVKLEFEND---------------E---LERARDLLAKA--------------------------------RS- 646 (913)
T ss_pred ---HHHHHHHhhccc---------------c---HHHHHHHHHHH--------------------------------hc-
Confidence 111111110000 0 01111111100 00
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHH
Q 003548 522 PLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQ 601 (811)
Q Consensus 522 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~ 601 (811)
.-.-..+++..+...--+++.+||+.+|+.++..- +....+.+....+.-..++.+.|...+-.=+.
T Consensus 647 -------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 647 -------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred -------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 00123467777778888899999999999998632 22334444444454455677777777766677
Q ss_pred hCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHH
Q 003548 602 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI 681 (811)
Q Consensus 602 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~ 681 (811)
.-|.++..|.++..+--..++ .+++...+.|.+.++|++.-+.+-.=..-+..|....|-....+|++..|++.++
T Consensus 714 ~cP~~ipLWllLakleEk~~~----~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQ----LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcc----hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 889999999998887666655 5688889999999999888766555555567788889999999999999987754
Q ss_pred HHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCC
Q 003548 682 NLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPK 761 (811)
Q Consensus 682 ~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~ 761 (811)
+-- ++-+-.+ .+|. .+.+ ...+.+.+++-|..-+|+.|-.-..++.|.+.|+|++...|++
T Consensus 790 WaE-aI~le~~------~~rk---Tks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~----- 850 (913)
T KOG0495|consen 790 WAE-AIWLEPR------PQRK---TKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN----- 850 (913)
T ss_pred HHH-HHHhccC------cccc---hHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-----
Confidence 422 1111111 1121 1122 2234466788899999999999999999999999999888764
Q ss_pred CCCCCCccccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003548 762 HNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDY 808 (811)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~~~ky 808 (811)
-.+--++.-.|..-|+-+.=.+|+.+.
T Consensus 851 --------------------GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 851 --------------------GDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred --------------------chHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 134445555556667766666666654
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=6.4e-23 Score=220.84 Aligned_cols=303 Identities=17% Similarity=0.140 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC----HHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWK 106 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~ 106 (811)
.+.+...+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34445566667777777777777777777777777777777777777777777777777777776643222 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD-----ATKTGAQLFL 181 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~ 181 (811)
.+|.++...|++++|+..|.++++.+|.+..++..++.++...|++++|++.++++++..|.+.. .+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 66666666677777777766666666666666666666666666666666666666665554321 2334555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHH
Q 003548 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261 (811)
Q Consensus 182 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 261 (811)
..|++++|+..++++++.+|++.. ++..+|.++...|++++|+..++++...
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------------- 243 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ-------------------------- 243 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------
Confidence 555555555555555555554432 3445555555555555555555555443
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003548 262 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (811)
.|......+..++.++...|++++|+..+++++.. .|+.. .+..++.++...|++++|+..+++++
T Consensus 244 ------------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 244 ------------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred ------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33222344455555566666666666666655544 34332 23556666666666666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHH--cCCHHHHHhhcCCCC
Q 003548 342 DRFEDNIDARLTLASLLLE--EAKEEEAITLLSPPK 375 (811)
Q Consensus 342 ~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~ 375 (811)
+..|++......++..+.. .|+.++|+..+++.+
T Consensus 310 ~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 310 RRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 6666555443333322211 335555555554433
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.5e-23 Score=221.38 Aligned_cols=276 Identities=17% Similarity=0.181 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHLAS 144 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 144 (811)
...+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666666666655532211 133455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHH
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~ 224 (811)
++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+...
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------ 177 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------ 177 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH------------------
Confidence 55555555555555555555555555555555555555555555555555555444433210
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003548 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304 (811)
Q Consensus 225 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (811)
.....+..+|.++...|++++|+..|++++...| .....+..+|.++...|++++|+..+++
T Consensus 178 -----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 178 -----------------EIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred -----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0112334566666777777777777777766665 3667888899999999999999999999
Q ss_pred HhhccCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC
Q 003548 305 LETNAGTDN-GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (811)
Q Consensus 305 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (811)
+... .|.. ..++..++.+|...|++++|+..++++++..|+...+ ..++.++...|++++|+..+++++...|++.
T Consensus 240 ~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 240 VEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 9876 4443 5678899999999999999999999999999987544 8899999999999999999999999988764
No 31
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=7.7e-23 Score=192.48 Aligned_cols=323 Identities=17% Similarity=0.150 Sum_probs=256.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
.+.++...+..|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+..-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDI---SLR------------IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 174 (811)
.+++++|.+++|..-|+.+++.+|.+. ++. ......+...|+...|++....++++.|-+...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 999999999999999999999888542 222 22333445567888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 254 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 254 (811)
..+.+|...|++..|+..++.+-++..++.+ .++.++.+++..|+.+.++...+.+++. +|..-..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~Cf------- 260 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLCF------- 260 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhHH-------
Confidence 8888888888888888888888887777765 6778888888888888888888888877 34332211
Q ss_pred HHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhccH
Q 003548 255 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKER 330 (811)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~ 330 (811)
..|.++.+ ..-...-+......++|.++++..+++++. .|..+ .....+..|+..-|++
T Consensus 261 ----------~~YKklkK------v~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 261 ----------PFYKKLKK------VVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred ----------HHHHHHHH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCH
Confidence 11222110 011112233456678899999999998876 55533 3455678899999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC
Q 003548 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (811)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (811)
.+|+..+.++++.+|++++++...+..|.-...++.|+.-|+++.+.++++.
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 9999999999999999999999999999999999999999999999999863
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=1.2e-21 Score=225.27 Aligned_cols=466 Identities=10% Similarity=0.013 Sum_probs=340.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 003548 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQ 178 (811)
Q Consensus 102 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~ 178 (811)
...|..+...+...|++++|+..|..+....| .+..++..+...+...++++.|..++..+.+.. ..+..++..+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34577888889999999999999999887543 356788889999999999999999999988753 236788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcC
Q 003548 179 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (811)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 258 (811)
.|.+.|++++|.++|+++.+ |+.. .|+.+...|.+.|++++|+.+|+++... + ...+...+..+..++...|
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~~~~---t~n~li~~~~~~g~~~~A~~lf~~M~~~-g--~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--RNLA---SWGTIIGGLVDAGNYREAFALFREMWED-G--SDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--CCee---eHHHHHHHHHHCcCHHHHHHHHHHHHHh-C--CCCChhhHHHHHHHHhcCC
Confidence 99999999999999998853 4333 6899999999999999999999999875 2 2334556677778888999
Q ss_pred CHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 003548 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY 338 (811)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 338 (811)
..+.+..++..+.......+..++..+...|.+.|++++|..+|+.+. +.+...|..+...|.+.|++++|...|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999988776655677889999999999999999999998764 3478899999999999999999999999
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhh
Q 003548 339 KALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAI 417 (811)
Q Consensus 339 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 417 (811)
+..+.. .-+...+..+...+.+.|++++|.+++..+.+..... +..++..+..+|.+.|++++|.++|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-----------d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-----------DIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-----------CeeehHHHHHHHHHCCCHHHHHHHH
Confidence 997753 2356789999999999999999999999887765321 2237889999999999999999999
Q ss_pred hHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003548 418 FPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKS-ELLVAARARKKIQKKEALKEEKKAL 496 (811)
Q Consensus 418 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~ 496 (811)
..+.+.... +|+.+...+.+. ...++......
T Consensus 384 ~~m~~~d~~---------------------------------t~n~lI~~y~~~G~~~~A~~lf~~-------------- 416 (697)
T PLN03081 384 DRMPRKNLI---------------------------------SWNALIAGYGNHGRGTKAVEMFER-------------- 416 (697)
T ss_pred HhCCCCCee---------------------------------eHHHHHHHHHHcCCHHHHHHHHHH--------------
Confidence 988643210 011000000000 00011111100
Q ss_pred HHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHH
Q 003548 497 AKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELR 576 (811)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~ 576 (811)
+...| +.++ ...+..+..++.+.|..++|.++++.+.+.... .|.. ...
T Consensus 417 M~~~g------------------------~~Pd---~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~--~~y 465 (697)
T PLN03081 417 MIAEG------------------------VAPN---HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRA--MHY 465 (697)
T ss_pred HHHhC------------------------CCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCc--cch
Confidence 00011 1122 223444455888889999999998888742222 1111 112
Q ss_pred HHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhh
Q 003548 577 SLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFT 656 (811)
Q Consensus 577 ~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~ 656 (811)
...+.+....|+.++|...++.+. ..| +...|+.+.......++ ...+.+.+.+.+...|++...++++.+++.
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~----~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKN----LELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC----cHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 223333346788888887765431 122 34567777666655555 335566666777777877777888888889
Q ss_pred cccchHHHHHHHHHHHhh
Q 003548 657 MASHHQDAARCYLEAYKL 674 (811)
Q Consensus 657 ~~~~y~~A~~~y~~a~~~ 674 (811)
..|.++.|...+...-+.
T Consensus 540 ~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 999999999988876644
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-23 Score=216.09 Aligned_cols=305 Identities=15% Similarity=0.088 Sum_probs=279.0
Q ss_pred HHHHHHHHHHHH--cCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSA--LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (811)
Q Consensus 69 ~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 146 (811)
..+..+|..|.. +-+..+|+..|.+.-...++...+...+|..|+.+++|++|..+|+.+-+..|-..+..-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 345556666554 446679999999976777888889999999999999999999999999999998777766677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHH
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 226 (811)
..+.+.-+---+-+.++..+|+.|+.|..+|.+|.-+++.+.|+++|+++++++|...- ++..+|.-+....+++.|.
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHH
Confidence 77776655556667788999999999999999999999999999999999999998874 7899999999999999999
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
..|+.++.. ++....+|+.+|.+|.++++++.|.-+|+++++.+|. +..+...+|.++.+.|+.++|+.+|++++
T Consensus 476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999999 8899999999999999999999999999999999995 88999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCccc
Q 003548 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (811)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (811)
.. +|.++-..+..|.++..++++++|+..+++..++.|++..++..+|.+|.+.|+.+.|+..|.-|.+++|.-
T Consensus 551 ~l-d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 551 HL-DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hc-CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 77 999999999999999999999999999999999999999999999999999999999999999999999975
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.2e-22 Score=192.94 Aligned_cols=380 Identities=14% Similarity=0.079 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--CHHHHHHHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK--DSALWKQLLT 110 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~ 110 (811)
+...++-.|.++-..|....|+..|.+++...|-+..+|..|+.+.... +........-|. +...-..++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHH
Confidence 4555666777888888888888888888888888888888777764321 222222222232 2233345667
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 189 (811)
++....+.++++.-+...... .|.+.-.....|.+...+.++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 777777888888888888887 6888888888888889999999999999999988887665555555555555443333
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (811)
Q Consensus 190 ~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 269 (811)
--+-+.+..++.-.++ ....+|..|...++.++|+.+|++++++ +|....+|..+|.-|..+.+...|+..|+.
T Consensus 316 s~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 3333445555544443 5667899999999999999999999999 889999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHH
Q 003548 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (811)
Q Consensus 270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (811)
+++.+|. +..+|+.+|.+|.-.+.+.=|+-+|+++... .|.++.+|..+|.||.++++.++|+++|.+++.....+..
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 9999995 8999999999999999999999999999987 9999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHH
Q 003548 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEA 429 (811)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 429 (811)
++..||.+|.+.++.++|..+|++.++....... ..+. -..+..-|+.-+.+.+++++|.......+.-....+.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~---~~~~--t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE---IDDE--TIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc---cchH--HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999999988774311111 0000 1235556999999999999999988888776555444
Q ss_pred HHH
Q 003548 430 LRQ 432 (811)
Q Consensus 430 ~~~ 432 (811)
.+.
T Consensus 543 ak~ 545 (559)
T KOG1155|consen 543 AKA 545 (559)
T ss_pred HHH
Confidence 333
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=8.6e-19 Score=178.79 Aligned_cols=596 Identities=13% Similarity=0.056 Sum_probs=365.5
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
|.+...++.-|..--..|++..|..+..+--+..|.+.++|..-.. +...+.|....-.++...|.++..|..-+.
T Consensus 282 P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~P~Sv~lW~kA~d 357 (913)
T KOG0495|consen 282 PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVANAVRFLPTSVRLWLKAAD 357 (913)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHHHHHhCCCChhhhhhHHh
Confidence 3344568888888889999999999999999999999999887654 456777888888999999999888887776
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (811)
+-.. ...-...++++++..|++...|-. .....+.+.|..++.++.+..|.+.+.|..++. +.-|+.|.
T Consensus 358 LE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLwlAlar----LetYenAk 426 (913)
T KOG0495|consen 358 LESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLWLALAR----LETYENAK 426 (913)
T ss_pred hhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHH
Confidence 6433 333456777788877877665532 334556666888888888888877777766664 34567777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF-SGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (811)
Q Consensus 191 ~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 269 (811)
.++.++-+.-|.++. +|..-+.+-...|+.+...+++.+.+.... .+...+.+.|+.-+...-..|..-.+..+...
T Consensus 427 kvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~a 504 (913)
T KOG0495|consen 427 KVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRA 504 (913)
T ss_pred HHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHH
Confidence 788888777777775 677777777777777777777777654332 22334445555555555555665555555555
Q ss_pred hhhccc--ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 270 LQWKNA--IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 270 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
++.... .+....|..-+..+.+.+.++-|..+|..+++. .|....+|...+..-...|..++-..++++++...|..
T Consensus 505 vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 443221 234455666666666666666666666666654 55566666666655555666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhH
Q 003548 348 IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (811)
Q Consensus 348 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 427 (811)
...|...+..+...|+...|..++.++++.+|.+.. +++.-..+......++.|...|.++-..+...
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee------------iwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE------------IWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH------------HHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 666666666666666666666666666666665433 55555555556666666666655544332111
Q ss_pred HHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003548 428 EALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD 507 (811)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (811)
+-........+- + +. ..+..+++ ..+
T Consensus 652 Rv~mKs~~~er~------------l-------------------d~--~eeA~rll---------------Ee~------ 677 (913)
T KOG0495|consen 652 RVWMKSANLERY------------L-------------------DN--VEEALRLL---------------EEA------ 677 (913)
T ss_pred hhhHHHhHHHHH------------h-------------------hh--HHHHHHHH---------------HHH------
Confidence 000000000000 0 00 00000000 000
Q ss_pred CCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhccc
Q 003548 508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST 587 (811)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~ 587 (811)
+-.+|+-+.+++.++.++..+++.+.|.+.|..-++..+.. ..|-.+++.+--..|
T Consensus 678 ------------------lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 678 ------------------LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------IPLWLLLAKLEEKDG 733 (913)
T ss_pred ------------------HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------chHHHHHHHHHHHhc
Confidence 01344556666667777777777777766666555433331 112222222222344
Q ss_pred CccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchh----hhcchhhcccchHH
Q 003548 588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPII----ISGHQFTMASHHQD 663 (811)
Q Consensus 588 d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~----~~g~~~~~~~~y~~ 663 (811)
....|..++.+..-++|.+...|.-..++-.+.|. -..+.-.+.+.++..|++--+.. +-++-.-
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn----~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r------- 802 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGN----KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR------- 802 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCccchhHHHHHHhccCccc-------
Confidence 55566666666666677777777666666666555 22344455566666665432211 1111111
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhchhHHHH
Q 003548 664 AARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAA 743 (811)
Q Consensus 664 A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~~~~Ai 743 (811)
-.-+.-|++..-.||-+.+.+|..|... .++.++...|.+.++..|....+|-++=+.+.+.|--..=.
T Consensus 803 -kTks~DALkkce~dphVllaia~lfw~e----------~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 803 -KTKSIDALKKCEHDPHVLLAIAKLFWSE----------KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred -chHHHHHHHhccCCchhHHHHHHHHHHH----------HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 1223456667777788888777777632 35777888888888888888888888888888889888889
Q ss_pred HHHHHHHcchhcc
Q 003548 744 SYYEKVLAIKEKD 756 (811)
Q Consensus 744 ~~YekvL~~~~~~ 756 (811)
+.|.++-.-.|.+
T Consensus 872 ev~~~c~~~EP~h 884 (913)
T KOG0495|consen 872 EVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHhccCCCC
Confidence 9999999888764
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-22 Score=200.38 Aligned_cols=344 Identities=20% Similarity=0.243 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 115 (811)
..-.+|+..+..|+|+.|+.+|.++|.++|.+...|.+...+|..+|+|++|++--.+.++++|+.+..|..+|..+.-.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHH---hCCCC--
Q 003548 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---------------------YEKAAESYEQIQK---LFPDN-- 169 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~~l~---~~p~~-- 169 (811)
|+|++|+..|.+.++.+|++......++.++..... +......|...++ .+|.+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999988888887732200 0001111111111 11100
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHcCCHHHH
Q 003548 170 ------------------------------------------------------------VDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 170 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A 189 (811)
......+|.......++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01245678888888899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAEIL 266 (811)
Q Consensus 190 ~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~ 266 (811)
++.|..++.++ .+.. .+.+.+-+|+..|.+.+.+.....+++.-... ...-......+|..+.+.++++.|+.+
T Consensus 244 ~q~y~~a~el~-~~it--~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA-TDIT--YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh-hhhH--HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99999999998 5554 57889999999999999999988887761100 011123344567788888999999999
Q ss_pred HHHhhhcccc-------------------------cHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHH
Q 003548 267 FADLQWKNAI-------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 321 (811)
Q Consensus 267 ~~~~~~~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la 321 (811)
|.+++..... +...-...-|..++..|+|..|+..|.+++.. .|+++.+|.++|
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCchhHHHHHHH
Confidence 9997764432 01122344588899999999999999999987 899999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCC
Q 003548 322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (811)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (811)
.||.++|.+..|+...+.+++++|+...+++.-|.++..+.++++|++.|+++++.+|.+..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999998643
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=3e-21 Score=217.01 Aligned_cols=374 Identities=11% Similarity=0.040 Sum_probs=305.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 003548 39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT 118 (811)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 118 (811)
..+.++...|+.++|+..+++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 55566778899999999999999444444555555588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---------
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS--------- 189 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A--------- 189 (811)
++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++.+++..+..++...|-...|
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 99999999999999986654 66677777788887899999999999999998887777766665544333
Q ss_pred ---------------------------------------HHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcccHHHH
Q 003548 190 ---------------------------------------IGILEEYLKVHPSDADL-----SVIDLLVAILMENNAYEKT 225 (811)
Q Consensus 190 ---------------------------------------~~~~~~~l~~~p~~~~~-----~~~~~l~~~~~~~g~~~~A 225 (811)
+..++.++...+..+.. .+..-...++...|++.++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 33344444433333321 2233455667778899999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHHHHcCChHHHHH
Q 003548 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALK 300 (811)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~ 300 (811)
+..|+.+... + .+.+..+....|..|+..+++++|+.+|..++...++ ........|..+++..+++++|..
T Consensus 312 i~~y~~l~~~-~--~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 312 IKEYEAMEAE-G--YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHhhhc-C--CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 9999887644 1 3667888999999999999999999999998775431 133335788999999999999999
Q ss_pred HHHHHhhc--------------cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 003548 301 YYHFLETN--------------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE 366 (811)
Q Consensus 301 ~~~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 366 (811)
+++.+... .+|+-......++.++...|++.+|++.+++.+...|.|+.++..+|.++...|.+.+
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99998763 1233456778889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHH
Q 003548 367 AITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVE 428 (811)
Q Consensus 367 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 428 (811)
|.+.++.+...+|.+.. +...++.++..+|++.+|......+++..++..
T Consensus 469 A~~~~k~a~~l~P~~~~------------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 469 AEQELKAVESLAPRSLI------------LERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHhhhCCccHH------------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999998754 888999999999999999999999988876643
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-20 Score=184.53 Aligned_cols=331 Identities=17% Similarity=0.150 Sum_probs=277.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Q 003548 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLAS 144 (811)
Q Consensus 67 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 144 (811)
++-.++..|.++.+.|....|+..|..++...|-+..+|..|+.+... +.........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 445677888888888888889888888888888888888888776532 223333333334 33444556777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHH
Q 003548 145 FYVEIGDYEKAAESYEQIQKL-FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~ 223 (811)
++....+.++++.-++..... .|.+.-.....|.+.....++++|+..|+.+.+.+|-..+ -.-.+..++.-..+-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhhH
Confidence 888888999999999998888 8888888889999999999999999999999999987765 3445666665555544
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
+-.-.-..+..+ +...++....+|..|.-.++.++|+.+|+++++.+|. ...+|..+|.-|.+..+...|++.|+
T Consensus 314 kLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 433344445555 5667777888899999999999999999999999995 99999999999999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCC
Q 003548 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (811)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (811)
++++. .|.+-.+|+.+|+.|.-++.+.=|+-+|+++.+..|.++..|..||.+|.+.++.++|+++|.+++...-.+..
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 99988 99999999999999999999999999999999999999999999999999999999999999999987766544
Q ss_pred CCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 384 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 384 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
++..+|.+|.+.++..+|...|.+-++..
T Consensus 468 ------------~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 468 ------------ALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999999999998877654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=9.4e-21 Score=184.66 Aligned_cols=464 Identities=16% Similarity=0.130 Sum_probs=339.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC-----H
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVR--LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----S 102 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~ 102 (811)
++-....++..|..|-....+.+|+..|+-+++ ..|+....-.++|.++++..++.+|+.+|+.++..-|.- .
T Consensus 197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 344566688899999999999999999998876 467777778899999999999999999999999988753 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------CH-
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PD---------NV- 170 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~---------~~- 170 (811)
..+.++|..+.+.|+|+.|+..|+.+++..|+.. +-+++..+++..|+-++-.+.|.+++.+- |+ +|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4577889999999999999999999999999655 55678889999999999999999998752 11 11
Q ss_pred HHHHHHHH---H--HHHcCCHHHHHHHHHHHHhh-----CCCCCC---H---------------HHHHHHHHHHHHcccH
Q 003548 171 DATKTGAQ---L--FLKCGQTARSIGILEEYLKV-----HPSDAD---L---------------SVIDLLVAILMENNAY 222 (811)
Q Consensus 171 ~~~~~la~---~--~~~~g~~~~A~~~~~~~l~~-----~p~~~~---~---------------~~~~~l~~~~~~~g~~ 222 (811)
+.+..-+. . .+...+-..|.+..-.+.++ .|+... | ..-.+.+.-+++.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 11111111 1 11222233344444333332 222210 1 1122445567888999
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHH
Q 003548 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (811)
Q Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (811)
+.|+++++-.-.. +......+..++..+++.+ .++.+|..+...++..+. -++.+..+.|.+.+..|++++|.+
T Consensus 436 ~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 436 EGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHH
Confidence 9999887655433 1222334445555555553 367888888888877765 377888888999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcc
Q 003548 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (811)
.|..++.. +..-..+++++|..+..+|+.++|+.+|-+.-.+--++.+++..++.+|..+.+..+|++++.++.+.-|.
T Consensus 512 ~ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 512 FYKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 99999865 66778899999999999999999999999988888889999999999999999999999999999998888
Q ss_pred cCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCcc
Q 003548 381 DMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSI 460 (811)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 460 (811)
++. ++..||.+|-+.|+..+|.++.-.-
T Consensus 591 dp~------------ilskl~dlydqegdksqafq~~yds---------------------------------------- 618 (840)
T KOG2003|consen 591 DPA------------ILSKLADLYDQEGDKSQAFQCHYDS---------------------------------------- 618 (840)
T ss_pred CHH------------HHHHHHHHhhcccchhhhhhhhhhc----------------------------------------
Confidence 654 8899999999999887776554221
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHH
Q 003548 461 LCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLC 540 (811)
Q Consensus 461 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 540 (811)
.+.|... +...+|..
T Consensus 619 ---yryfp~n--------------------------------------------------------ie~iewl~------ 633 (840)
T KOG2003|consen 619 ---YRYFPCN--------------------------------------------------------IETIEWLA------ 633 (840)
T ss_pred ---ccccCcc--------------------------------------------------------hHHHHHHH------
Confidence 1111111 11123432
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhh
Q 003548 541 KALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRM 620 (811)
Q Consensus 541 ~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 620 (811)
-.+....-.+.|+..++++-- ..+....|.++.++|...+|++..|++.++..-.++|.+..-...+.++....
T Consensus 634 ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 244455556778888877752 23446678888888888899999999999999999999988776666655444
Q ss_pred cc
Q 003548 621 GK 622 (811)
Q Consensus 621 ~~ 622 (811)
|.
T Consensus 708 gl 709 (840)
T KOG2003|consen 708 GL 709 (840)
T ss_pred cc
Confidence 44
No 40
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-18 Score=179.00 Aligned_cols=416 Identities=17% Similarity=0.125 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc--cccHHHHHHHH
Q 003548 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN--AIDHADLITEV 285 (811)
Q Consensus 208 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 285 (811)
++..+...+...|+++.+.+.|++++.. .-...+.|+.++.++...|....|+.+++...... |++....+..-
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 6777888888899999999999998876 45667889999999999999999999999876665 54333334444
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhcCCCHHH
Q 003548 286 ADTLMSLGHSNSALKYYHFLETNA----GTDNGYLYLKLAECYLSLK-----------ERAHAIMFFYKALDRFEDNIDA 350 (811)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~ 350 (811)
..+....+..++++++..+++... ..-.+..+..+|.+|..+- ...++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 445566788999999999988631 2235678888888886542 3578999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHH
Q 003548 351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 430 (811)
Q Consensus 351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 430 (811)
.+.++.-|...++.+.|..+..++++.++.+ +..++..++.++..++++.+|+.+....+.+..++-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-----------~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-- 547 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGD-----------SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-- 547 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--
Confidence 9999999999999999999999999997765 345789999999999999999999888887653321
Q ss_pred HHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 003548 431 RQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTD 510 (811)
Q Consensus 431 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (811)
T Consensus 548 -------------------------------------------------------------------------------- 547 (799)
T KOG4162|consen 548 -------------------------------------------------------------------------------- 547 (799)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhcc----CChhHHHHHHHHhhhhhhcc
Q 003548 511 DESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI----LPLEKKEELRSLGAKMAYDS 586 (811)
Q Consensus 511 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~~l~~l~~~~~~~~ 586 (811)
.++.....+-...++.++|+..+.+.+.+=... +.-+ ...+.-+........
T Consensus 548 -----------------------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~-~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 548 -----------------------VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD-EGKLLRLKAGLHLAL 603 (799)
T ss_pred -----------------------hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-hhhhhhhhcccccCc
Confidence 011101111111233334444443333221000 0000 000000111111122
Q ss_pred cCccchHHHHHHHHH-------------------hCCCChh-------HHHHHHHHHHhhcccccccchhhHHHHHHHHh
Q 003548 587 TDPNHGFDCAKYILQ-------------------LHPYSLS-------AWNCYYKVLSRMGKINSKHSKHSKFIRYLRAK 640 (811)
Q Consensus 587 ~d~~~a~~~~r~~~~-------------------~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 640 (811)
.++.++....|++.. .-|.... .|.+....+...+. ...+.-.+....+-
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~----~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN----DDEARSCLLEASKI 679 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHhc
Confidence 234444444444321 1122222 34333333333333 11233345556666
Q ss_pred cCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcC
Q 003548 641 YKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCE 720 (811)
Q Consensus 641 ~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~ 720 (811)
.|-++..++..|..+...|...+|...|.-|+.+||+++.+.-.+|-++...+..| ..+.-+++...+++.|
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~--------la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR--------LAEKRSLLSDALRLDP 751 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc--------hHHHHHHHHHHHhhCC
Confidence 78788888999999999999999999999999999999999999999999887443 3445579999999999
Q ss_pred CCchhhHhHHHHHHHhchhHHHHHHHHHHHcchhcc
Q 003548 721 HSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKD 756 (811)
Q Consensus 721 ~~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~ 756 (811)
.+.|+||++|.++.++|..+.|+++|.-++++++.+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999998764
No 41
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=3.3e-18 Score=175.30 Aligned_cols=380 Identities=18% Similarity=0.231 Sum_probs=289.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
+||.-..+|.++.-.+..++|...++..+.++...|++++.+...|..+..+|+.++|..+.+.++..++.+...|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 189 (811)
.++....+|++|+.||+.|+.++|+|...+..++.+..++++++.....-.+.++..|..-..|...|..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHH
Q 003548 190 IGILEEYLKVHPSDADL------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263 (811)
Q Consensus 190 ~~~~~~~l~~~p~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 263 (811)
...++...+.....++. .+......+..+.|.+++|.+.+..--.. .-.........+.++.+++++++|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99998887765222221 23344566677788888888877665433 233445556678899999999999
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHH-HHHHHHhhccCCC------------------------------
Q 003548 264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL-KYYHFLETNAGTD------------------------------ 312 (811)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~~~------------------------------ 312 (811)
...+..++..+| ++...+..+-.++..-.+--+++ ..|....+. .|.
T Consensus 239 ~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 999999999988 47776666666654333333333 344333222 110
Q ss_pred --CHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hc------------CCCH--HHHHHHHHHHHHcCCHHHHHh
Q 003548 313 --NGYLYLKLAECYLSLKERAHAIMFFYKALD-------RF------------EDNI--DARLTLASLLLEEAKEEEAIT 369 (811)
Q Consensus 313 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~------------p~~~--~~~~~la~~~~~~g~~~~A~~ 369 (811)
-+.+...+-..|. +.... .+.++.+. -. |... ...+.++.-+...|+++.|..
T Consensus 317 Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred cCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 0011111111111 11111 12222221 11 1122 233457778888888888888
Q ss_pred hcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHH
Q 003548 370 LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR 431 (811)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 431 (811)
+++.+++..|.-. +.+...|+++...|++++|..++..+.+-....++.+
T Consensus 393 yId~AIdHTPTli------------Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 393 YIDLAIDHTPTLI------------ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHhccCchHH------------HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 8888888888653 3777888888888888888888887766554444444
No 42
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=3.3e-18 Score=182.52 Aligned_cols=638 Identities=13% Similarity=0.033 Sum_probs=360.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 126 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 126 (811)
..+...|...|-++++++|..+.+|..||.+|...-+...|..+|++|.+++|.+..++...+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45588899999999999999999999999999998899999999999999999999888888888888888888887766
Q ss_pred HHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 127 QAIRAEPKD--ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 127 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
.+-+..|.. ...|..+|-.|.+.++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 555555532 334555777777888888888888888888888888888888888888888888888888877777764
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcc---------------------------------------------C
Q 003548 205 DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS---------------------------------------------G 239 (811)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------------------------------------------~ 239 (811)
- ..+..+.+....|+|.+|+..+...+..... .
T Consensus 631 y--~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 631 Y--GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred H--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3 4556666666777777777666654432100 0
Q ss_pred CCChHHHHHHHHHH-------------------HH----HcCCH---H---HHHHHHHHhhhcccccHHHHHHHHHHHHH
Q 003548 240 KELPLKLKVKAGIC-------------------YL----RLGNM---E---KAEILFADLQWKNAIDHADLITEVADTLM 290 (811)
Q Consensus 240 ~~~~~~~~~~la~~-------------------~~----~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (811)
...+...|..++.+ +. ..+.. + -|.+++-..+.. ...+..|+++|..|+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHH
Confidence 00000011111110 00 00000 0 111222111111 124566777777765
Q ss_pred H--------cCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003548 291 S--------LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA 362 (811)
Q Consensus 291 ~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 362 (811)
. ..+...|+.++.+++.. ..++...|..+|.+ ...|++.-|..+|-+.+...|.+...|.++|.++.+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 5 12334688888888876 77788888888877 55688888888888888888888888888888888888
Q ss_pred CHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhH--hhhh-----------------
Q 003548 363 KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP--LVCE----------------- 423 (811)
Q Consensus 363 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--~l~~----------------- 423 (811)
+++-|...|..+..++|.+.. .+...+.+....|+.-++..+|.- .+..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~------------~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLV------------QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhH------------HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 888888888888888888744 333444444444444444444433 1111
Q ss_pred hhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHH--------HHHHHHHHHHHHHHHHHHH--
Q 003548 424 SLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELL--------VAARARKKIQKKEALKEEK-- 493 (811)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~-- 493 (811)
+..+..........+.++.. .-.....+...++.. |. +....+..+.+ .+.|....+....+..+.+
T Consensus 933 h~~Ng~~e~~I~t~~ki~sA-s~al~~yf~~~p~~~-fA-y~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSA-SLALSYYFLGHPQLC-FA-YAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHhccchHHHHHHhhhhhhh-HHHHHHHHhcCcchh-HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 11110000000011111110 000111111111100 00 00000001111 1223333333221111100
Q ss_pred --HHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhH
Q 003548 494 --KALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEK 571 (811)
Q Consensus 494 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~ 571 (811)
+..++..+..-++ ..-....+.-.+...-.......+.-.|.++++.+.+++++.++.. ...
T Consensus 1010 k~~~gRL~lslgefe-------------~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~s---e~d 1073 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFE-------------SAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNS---ESD 1073 (1238)
T ss_pred hhhhhhhhhhhcchh-------------hHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhccc---ccc
Confidence 1111111110000 0000000111122333444555566689999999999999876533 111
Q ss_pred HHHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHHHHHHhcC----CCCCc
Q 003548 572 KEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYK----DCVPP 647 (811)
Q Consensus 572 ~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~ 647 (811)
...|....+-|....+..+.|....-.+....|........+..+.....+. .-.+-++.-+.++| .+.++
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da-----~~ssaileel~kl~k~e~~~~~~ 1148 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADA-----HGSSAILEELEKLLKLEWFCWPP 1148 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhh-----hhhHHHHHHHHHhhhhHHhccCh
Confidence 2233333333333455566777666666666666666655554443333220 11222233333333 24444
Q ss_pred hhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchH----HHHHHHHHHHHHhHhhcCCCc
Q 003548 648 IIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKH----QCLAQGFAFLYNNLRLCEHSQ 723 (811)
Q Consensus 648 ~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~----~~~~q~~~~l~~y~~~~~~~~ 723 (811)
..+.--++...++-.---...+|+.-.+|.||.++-.|.+-|.++..+..+..-| .+...-+.-.++..-+.|-+.
T Consensus 1149 ~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~~L~Pwd~ 1228 (1238)
T KOG1127|consen 1149 GLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYAQRNAKNGVVANHGKKAYLYTAVLKTIQKAALLSPWDP 1228 (1238)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCCeehhHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4454555555555444455678899999999999999988888776654443211 222233333444444566655
Q ss_pred hhh
Q 003548 724 EAL 726 (811)
Q Consensus 724 e~~ 726 (811)
.+|
T Consensus 1229 a~w 1231 (1238)
T KOG1127|consen 1229 AIW 1231 (1238)
T ss_pred HHH
Confidence 544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=5.9e-21 Score=186.05 Aligned_cols=266 Identities=17% Similarity=0.155 Sum_probs=223.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003548 141 HLASFYVEIGDYEKAAESYEQIQKLFPDN-VDATKTGAQLFLKC--GQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217 (811)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~ 217 (811)
..+.-+.+.|+++.|+++++-.-+.+... ..+..++..+++.+ .++..|.++-..++..+.-++. ++.+.|.+.+
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~--a~~nkgn~~f 501 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA--ALTNKGNIAF 501 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH--HhhcCCceee
Confidence 34556777888888888876555443332 23445555555553 4677888888888877766654 6778888889
Q ss_pred HcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHH
Q 003548 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS 297 (811)
Q Consensus 218 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 297 (811)
..|++++|...|++++.. +.....+++++|..+..+|+.++|+.+|-++...-. .+.++++.++.+|....+..+
T Consensus 502 ~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHH
Confidence 999999999999999977 677889999999999999999999999998754433 478999999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCC
Q 003548 298 ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377 (811)
Q Consensus 298 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 377 (811)
|++++-++... -|.+|.++..+|.+|-+.|+..+|.+++-......|-+.+....|+..|....-+++|+.+|+++.-.
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999876 89999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
.|.... | .+..+.++.+.|+|.+|.+.|+.+-++.+.
T Consensus 656 qp~~~k-------w-----qlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 656 QPNQSK-------W-----QLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred CccHHH-------H-----HHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 887543 3 467899999999999999999998877644
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5e-20 Score=185.72 Aligned_cols=295 Identities=16% Similarity=0.169 Sum_probs=263.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 108 (811)
.+..+..-+..+|..++..++|.+..++++..++.+|-++.++-....++...|+..+-...-.+.+...|+.+..|+.+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 44456677888999999999999999999999999999888877666699999999988888889999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
|..|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..+-++.|........+|.-|...++++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA 268 (811)
Q Consensus 189 A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 268 (811)
|.+.|.+++.+.|.++- ++..+|.+.+..+.|.+|..+|+.++...+
T Consensus 399 Ae~Ff~~A~ai~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik------------------------------- 445 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIK------------------------------- 445 (611)
T ss_pred HHHHHHHHHhcCCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhh-------------------------------
Confidence 99999999999999986 788999999999999999999999885411
Q ss_pred HhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCH
Q 003548 269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (811)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (811)
.+....+ .-...+.++|.++.+.+++++|+..+++++.. .|.++.++..+|.+|..+|+++.|+.+|.+++-+.|++.
T Consensus 446 ~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 446 SVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 1111111 24457889999999999999999999999977 899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 003548 349 DARLTLASLL 358 (811)
Q Consensus 349 ~~~~~la~~~ 358 (811)
-+...|+.+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 7777666444
No 45
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=1.9e-18 Score=184.29 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=188.6
Q ss_pred cCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 81 LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160 (811)
Q Consensus 81 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (811)
+.+...|...|-++++++|....+|..||.+|...-+...|..||++|.+++|.+..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcc
Q 003548 161 QIQKLFPDN--VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS 238 (811)
Q Consensus 161 ~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 238 (811)
..-+..|.. ...|..+|..|...++...|+..|+.++..+|.+.. .|..+|.+|...|.+..|++.|.++...
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n--~W~gLGeAY~~sGry~~AlKvF~kAs~L--- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN--LWLGLGEAYPESGRYSHALKVFTKASLL--- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH--HHHHHHHHHHhcCceehHHHhhhhhHhc---
Confidence 766666653 355677999999999999999999999999999886 7999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc------cHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003548 239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI------DHADLITEVADTLMSLGHSNSALKYYHFL 305 (811)
Q Consensus 239 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (811)
.|.+....+..+.+....|++.+|+..+..++..... ...+.+..++..+.-.|-+..|.+++++.
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8899999999999999999999999999987654331 23444555555555556555555555543
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.6e-20 Score=184.85 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-----------------NHKSAFDFYVIAA 95 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~a~ 95 (811)
+..-.+-+|.++....+.++|...|.+++..++.+.++...+-....-.- ...+-++.+-++.
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 44456778999999999999999999999999998877665544332211 1111111111111
Q ss_pred ----------ccCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003548 96 ----------HLSP--------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157 (811)
Q Consensus 96 ----------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 157 (811)
..+| ++++.....+..++..+++.+..+.....++.+|-+...+-....++.+.|+..+-..
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~ 299 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL 299 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH
Confidence 0112 3567788889999999999999999999999999888776665559999999999888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 158 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
.-.++++..|+.+-.|+..|..|...|++.+|..+|.++..++|.... +|..+|..+...|..++|+..|..|.+..
T Consensus 300 lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp--aWl~fghsfa~e~EhdQAmaaY~tAarl~- 376 (611)
T KOG1173|consen 300 LSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP--AWLAFGHSFAGEGEHDQAMAAYFTAARLM- 376 (611)
T ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH--HHHHHhHHhhhcchHHHHHHHHHHHHHhc-
Confidence 889999999999999999999999999999999999999999999886 79999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---C---C
Q 003548 238 SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA---G---T 311 (811)
Q Consensus 238 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~---~ 311 (811)
+....-.+.+|.-|...++++-|...|.+++...|. ++-++..+|.+.+..+.|.+|..+|+.++... . +
T Consensus 377 ---~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 377 ---PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred ---cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 444445667899999999999999999999999984 99999999999999999999999999877321 1 1
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC
Q 003548 312 DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (811)
Q Consensus 312 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (811)
.-...+.++|.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-+.|++.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 23456899999999999999999999999999999999999999999999999999999999999999874
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=4.2e-20 Score=174.22 Aligned_cols=365 Identities=18% Similarity=0.181 Sum_probs=233.7
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003548 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (811)
Q Consensus 64 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 143 (811)
+|.+.+-++.+|.-++..|++..|+..|..|++.+|++..+++..|.+|+..|+..-|+.-+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34456667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcc
Q 003548 144 SFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (811)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g 220 (811)
.++.++|++++|..-|+.++..+|.+. ++...++.+-.. ..+......+...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------WVLVQQLKSASGSG 169 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------HHHHHHHHHHhcCC
Confidence 777777777777777777777777542 121111111000 01112222333445
Q ss_pred cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHH
Q 003548 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (811)
Q Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (811)
+...|+..+...+++ .+.+..++...+.||...|++..|+..++.+-.... ++.+.++.++.+++..|+.+.++.
T Consensus 170 D~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred chhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHH
Confidence 555555555555555 455555555555555555555555555555443332 355555555555555555555555
Q ss_pred HHHHHhhccCCCCHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCH
Q 003548 301 YYHFLETNAGTDNGYLY------------LKLAECYLSLKERAHAIMFFYKALDRFEDNIDA----RLTLASLLLEEAKE 364 (811)
Q Consensus 301 ~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~ 364 (811)
..+..++. +|+.-..+ ..-+.-....++|.++++..+++++.+|..+.+ ...+..++...|++
T Consensus 245 ~iRECLKl-dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 245 EIRECLKL-DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 55555544 44432221 111233445788999999999999999985444 34577888999999
Q ss_pred HHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhH
Q 003548 365 EEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGI 444 (811)
Q Consensus 365 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 444 (811)
.+|+....++++.+|++. .++...+.+|....+|++|+..|+.+.+-...+...++.....+++....
T Consensus 324 ~eAiqqC~evL~~d~~dv------------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDV------------QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999864 49999999999999999999999999876655444444333222221110
Q ss_pred HHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHH
Q 003548 445 LQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARA 479 (811)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 479 (811)
...+-=.+.|++...++.++.+++|.
T Consensus 392 ---------~kRDYYKILGVkRnAsKqEI~KAYRK 417 (504)
T KOG0624|consen 392 ---------GKRDYYKILGVKRNASKQEITKAYRK 417 (504)
T ss_pred ---------ccchHHHHhhhcccccHHHHHHHHHH
Confidence 01111234566666677777777764
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.7e-21 Score=198.13 Aligned_cols=263 Identities=21% Similarity=0.243 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003548 106 KQLLTFAVQKGDTAQAMYYIRQAIR-A-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (811)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 183 (811)
+.+|.++...|++++|+.++.+.+. . .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4667888888888888888865544 3 367777788888888888888888888888888877777777777777 678
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHH
Q 003548 184 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263 (811)
Q Consensus 184 g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 263 (811)
+++++|+.++++..+..++ +. .+..++.++...++++++...++++.... ..+.+...+..+|.++.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PR--YLLSALQLYYRLGDYDEAEELLEKLEELP--AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc-cc--hhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888877766543 22 45566777888888888888888876541 1345667788888888888888888
Q ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 003548 264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 343 (811)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (811)
+..+++++..+| +++.+...++.++...|+++++...+...... .|.++.++..+|.++..+|++++|+.+|++++..
T Consensus 166 ~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 888888888887 48888888999999999999888888877765 5778888889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 344 FEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 344 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
+|+++.++..+|.++...|+.++|..+..++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999887764
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.6e-19 Score=178.36 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=277.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 150 (811)
....|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+.+..|..+|..+.-+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhhCC-----
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ------------------------TARSIGILEEYLKVHP----- 201 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~l~~~p----- 201 (811)
+|++|+..|.+.++.+|++......++.++...-. .+.+.......+..+|
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999999999999888888877622200 0011111111111110
Q ss_pred ---------------------------------CCC----------------------CHHHHHHHHHHHHHcccHHHHH
Q 003548 202 ---------------------------------SDA----------------------DLSVIDLLVAILMENNAYEKTL 226 (811)
Q Consensus 202 ---------------------------------~~~----------------------~~~~~~~l~~~~~~~g~~~~A~ 226 (811)
..+ .......+|.......++..|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 000 0023457888889999999999
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccH------HHHHHHHHHHHHHcCChHHHHH
Q 003548 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH------ADLITEVADTLMSLGHSNSALK 300 (811)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 300 (811)
+.|..++.+ . .....+.+.+-+++..|.+.+.+.....+++...... ......+|..+...++++.|+.
T Consensus 245 q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 245 QHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999998 5 6777888899999999999999988888776544211 2234446778888999999999
Q ss_pred HHHHHhhcc-------------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003548 301 YYHFLETNA-------------------------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (811)
Q Consensus 301 ~~~~~~~~~-------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (811)
+|++++... .|....--..-|..++..|+|..|+..|.+++..+|+++..+.+.|
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 999876431 1222333455689999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhH
Q 003548 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV 427 (811)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 427 (811)
.+|.++|.+..|+...+.+++++|... ..+..-|.++..+.+|++|.+.|...++..+..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~------------kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFI------------KAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999999999999999753 488899999999999999999999998876554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=3e-18 Score=183.21 Aligned_cols=298 Identities=14% Similarity=0.084 Sum_probs=171.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhc
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQK 115 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~ 115 (811)
.+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 466777777788888888887777777776666777777777777888888888877777777664 3555567777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHH
Q 003548 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----TGAQLFLKCGQTARSIG 191 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~~A~~ 191 (811)
|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+..+.++.... ....-....+..+++..
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77777777777777777777777777777777777777777777777766444433221 11111133333344445
Q ss_pred HHHHHHhhCCCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHH--HHHHHHHHHHcCCHHHHHHHH
Q 003548 192 ILEEYLKVHPSD--ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL--KVKAGICYLRLGNMEKAEILF 267 (811)
Q Consensus 192 ~~~~~l~~~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~ 267 (811)
.+.++.+..|.. .+...+..++..+...|++++|...++++++..+ .+... ...........++.+.+...+
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p----d~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG----DDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----CcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 566666555531 1123566666677777777777777777766522 22111 011111122234444444444
Q ss_pred HHhhhcccccHH--HHHHHHHHHHHHcCChHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003548 268 ADLQWKNAIDHA--DLITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 268 ~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (811)
++.++..| +++ .....+|++++..|++++|.++|++ +.+. .| ++..+..+|.++.+.|+.++|.++|++++
T Consensus 323 e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444 233 4444444444445555555554442 2221 22 22223344444444455444544444443
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=3.4e-18 Score=178.76 Aligned_cols=364 Identities=17% Similarity=0.088 Sum_probs=288.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccC--CCCHHHHHHHHHHH-HhcCC
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKDSALWKQLLTFA-VQKGD 117 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~-~~~g~ 117 (811)
...+...|+++.+.+.|++++...-...+.|+.++.++...|....|+...+...... |+++..+...+.++ ...+.
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 3445678999999999999988877788899999999999999999999999999888 77777777666555 45688
Q ss_pred HHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003548 118 TAQAMYYIRQAIRAE-----PKDISLRIHLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (811)
Q Consensus 118 ~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 181 (811)
+++++.+..+++... --.+..+..+|.+|..+- ...+++..++++++.+|+|+.+.+.++.-|.
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA 489 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 999999999998832 122456677777765432 3578889999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCH-
Q 003548 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM- 260 (811)
Q Consensus 182 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~- 260 (811)
..++.+.|+...+++++.++.+.. .+|..++.++...+++.+|+.+...++..++.+ .........+-...++.
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~-~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N----~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSA-KAWHLLALVLSAQKRLKEALDVVDAALEEFGDN----HVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh----hhhchhhhhhhhhcccHH
Confidence 999999999999999999766543 478899999999999999999999988875431 11111111111112222
Q ss_pred ------------------------------------------HHHHHHHHHhhh--------cc-----c------c---
Q 003548 261 ------------------------------------------EKAEILFADLQW--------KN-----A------I--- 276 (811)
Q Consensus 261 ------------------------------------------~~A~~~~~~~~~--------~~-----~------~--- 276 (811)
.+|......+.. .+ | .
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 223222222110 00 0 0
Q ss_pred ---cHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHH
Q 003548 277 ---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 277 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (811)
.....|...+..+...+..++|..++.++... .|..+..|+..|.++...|+..+|.+.|..++.++|+++.+...
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 01235677889999999999999999998876 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHh--hcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhh
Q 003548 354 LASLLLEEAKEEEAIT--LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVC 422 (811)
Q Consensus 354 la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 422 (811)
+|.++.+.|+..-|.. ++..++..+|.+.. +|+.+|.++...|+.++|.+.|...++
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~e------------aW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHE------------AWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999888877 99999999998765 789999999999999999999988764
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=6.3e-21 Score=193.98 Aligned_cols=259 Identities=22% Similarity=0.360 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 003548 39 GEASLQYAYGNFEQAISLLKEVVRL--SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (811)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 116 (811)
..|..++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3355555555555555555433322 244555555555555555555555555555555555544444444444 4455
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILE 194 (811)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (811)
++++|+.++.++.+..+ ++..+...+.++...++++++...++++.... +.++..+..+|.++.+.|+.++|+..++
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444332 33344444444555555555555555544322 3344455555555555555555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc
Q 003548 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274 (811)
Q Consensus 195 ~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 274 (811)
++++.+|+++. +...++.++...|+++++...+...... .
T Consensus 171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~--------------------------------------~ 210 (280)
T PF13429_consen 171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA--------------------------------------A 210 (280)
T ss_dssp HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH--------------------------------------C
Confidence 55555555443 3444555555555555544444444433 2
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003548 275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (811)
| .++..+..+|.++...|++++|+.+|+++... .|+++.++..+|.++...|+.++|..++++++
T Consensus 211 ~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 P-DDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred c-CHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 2 24444555555555555555555555555543 55555555555555555555555555555544
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=1.5e-18 Score=185.52 Aligned_cols=306 Identities=14% Similarity=0.067 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFYV 147 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 147 (811)
......|.+....|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34466788888999999999999999999998888888899999999999999999999999989875 56667899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcccHHHH
Q 003548 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKT 225 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~l~~~~~~~g~~~~A 225 (811)
..|++++|...++.+.+..|+++.++..++.++...|++++|.+.+.+..+....++.. ........-....+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999875444321 0111122222344455556
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHH-HHHHHHHHHHcCChHHHHHHHHH
Q 003548 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL-ITEVADTLMSLGHSNSALKYYHF 304 (811)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~ 304 (811)
...+.++....+...+....++..++..+...|++++|...+++.++..|.+.... ...........++.+.+++.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 66777777764433446789999999999999999999999999999888533211 12233334456888999999999
Q ss_pred HhhccCCCCH--HHHHHHHHHHHHhccHHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 305 LETNAGTDNG--YLYLKLAECYLSLKERAHAIMFFY--KALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 305 ~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
.++. .|+++ .+...+|+++...|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.+++++++.
T Consensus 325 ~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9976 89999 899999999999999999999999 57778887766 55999999999999999999997643
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=1e-18 Score=193.92 Aligned_cols=272 Identities=13% Similarity=0.007 Sum_probs=200.5
Q ss_pred hCCCChHH--HHHHHHHHHHc---CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 003548 63 LSPNLPET--YNTLGLAHSAL---GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK---------GDTAQAMYYIRQA 128 (811)
Q Consensus 63 ~~p~~~~~--~~~la~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 128 (811)
..|.+.++ ++..|..+... +++++|+.+|+++++++|+++.+|..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 44444442 34445444332 3467888888888888888888888888776533 3478888888888
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHH
Q 003548 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 208 (811)
Q Consensus 129 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 208 (811)
++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++++++.+|.++. .
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~ 408 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--A 408 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--h
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888765 3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHH
Q 003548 209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT 288 (811)
Q Consensus 209 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 288 (811)
...++.++...|++++|+..+++++... .|.....+..+|.++...|++++|...+.++....| ........++..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHH
Confidence 4455556777888888888888887652 245566778888888888888888888888766655 466677778888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 003548 289 LMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (811)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (811)
+...|+ +|...++.+.+. ....+.-......++.-.|+.+.+... +++.+..
T Consensus 485 ~~~~g~--~a~~~l~~ll~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNSE--RALPTIREFLES-EQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccHH--HHHHHHHHHHHH-hhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 877774 777777765543 111221222267777778888877777 6665543
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-17 Score=161.69 Aligned_cols=299 Identities=15% Similarity=0.103 Sum_probs=249.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
+.++.....+.-+..++-.-....|++...+..+|.++...|++.+|+..|+++.-++|......-..|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 33333333344444455555556677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA 268 (811)
Q Consensus 189 A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 268 (811)
-..+....+........ -|+.-+.+.+..+++..|+.+-++++.. ++.+...+...|.++...|+.++|+-.|+
T Consensus 285 ~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHH
Confidence 77777777766644433 4667778888889999999999999998 88899999999999999999999999999
Q ss_pred HhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHH-HHHH-HhccHHHHHHHHHHHHHhcCC
Q 003548 269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA-ECYL-SLKERAHAIMFFYKALDRFED 346 (811)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~ 346 (811)
.++...|. ..+.|..+..+|...|++.+|.-.-+.+... .+.++..+..+| .++. .-.--++|.+++++++.+.|+
T Consensus 359 ~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 359 TAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred HHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 99888874 8899999999999999999999999988876 788888888886 4443 334468999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 347 NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 347 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
...+-..+++++...|+++.++.++++.+...|+. ..+..+|.++...+.+.+|.+.|..+++..++
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999988875 37899999999999999999999999987665
Q ss_pred HH
Q 003548 427 VE 428 (811)
Q Consensus 427 ~~ 428 (811)
.+
T Consensus 504 ~~ 505 (564)
T KOG1174|consen 504 SK 505 (564)
T ss_pred ch
Confidence 43
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=168.51 Aligned_cols=273 Identities=16% Similarity=0.128 Sum_probs=210.2
Q ss_pred HHHHHcCChHHHHHHHHHHHccC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003548 76 LAHSALGNHKSAFDFYVIAAHLS---PK-------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (811)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 145 (811)
.+++..+|...|-......++.. |. +..--..+|.||...|.+.+|...++.+++..| .++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 34556677777766555444332 11 111123678999999999999999999888766 67788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHH
Q 003548 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (811)
Q Consensus 146 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A 225 (811)
|....+...|+..+.+.++..|.++..+...+.++..++++++|.++|+.+++.+|.+.+ +...++.-|+..++++-|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence 999999999999999999999999888889999999999999999999999999888887 455677778888888999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc--ccccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAIDHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
+.+|++.++. ...+++++.++|.|.+..++++-++..|++++.. .|....++|+++|.+....|++.-|...|+
T Consensus 344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999888888 6667778888888888888888888888876643 344566777777777777777777777777
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003548 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (811)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (811)
-++.. ++++..++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.
T Consensus 420 laL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 420 LALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 77754 77777777777777777777777777777777777776666555543
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=7.6e-19 Score=164.74 Aligned_cols=338 Identities=15% Similarity=0.121 Sum_probs=277.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--------CChHHHHHHHHHH-HccC--CCCH----
Q 003548 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL--------GNHKSAFDFYVIA-AHLS--PKDS---- 102 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a-~~~~--p~~~---- 102 (811)
+-+|..+++...|+...+++..+++..|++..+|.....++... .+-.+|...++.- +... |...
T Consensus 8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p 87 (478)
T KOG1129|consen 8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTP 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCC
Confidence 44688999999999999999999999999999999988887643 2222455544321 1110 1000
Q ss_pred --------------------------------------------------------------------------------
Q 003548 103 -------------------------------------------------------------------------------- 102 (811)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (811)
T Consensus 88 ~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nls 167 (478)
T KOG1129|consen 88 FTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNLS 167 (478)
T ss_pred CCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeehh
Confidence
Q ss_pred -----------H-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C-------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 103 -----------A-LWKQLLTFAVQKGDTAQAMYYIRQAIRAE---P-------KDISLRIHLASFYVEIGDYEKAAESYE 160 (811)
Q Consensus 103 -----------~-~~~~la~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (811)
. +-...-.++...++...|-......++.+ | .+......+|.+|..+|-+.+|.+.++
T Consensus 168 RLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlq 247 (478)
T KOG1129|consen 168 RLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQ 247 (478)
T ss_pred hcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 0 00011123344445555544444333322 2 123334569999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCC
Q 003548 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK 240 (811)
Q Consensus 161 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 240 (811)
..++..| .++.+..++.+|.+..++..|+..+...++..|.+.. .+...+.++...+++++|.++|+.+++. +
T Consensus 248 ssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT--~l~g~ARi~eam~~~~~a~~lYk~vlk~----~ 320 (478)
T KOG1129|consen 248 SSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT--YLLGQARIHEAMEQQEDALQLYKLVLKL----H 320 (478)
T ss_pred HHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh--hhhhhHHHHHHHHhHHHHHHHHHHHHhc----C
Confidence 9999876 6889999999999999999999999999999999886 5778999999999999999999999999 8
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC--CCCHHHHH
Q 003548 241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLYL 318 (811)
Q Consensus 241 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 318 (811)
+.++++...+|.-|+..++++-|+.+|++++.... .+++.+.++|.+++-.++++-++..|++++.... ...+++|+
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 88888888899999999999999999999999887 4999999999999999999999999999886633 34678999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCC
Q 003548 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (811)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (811)
++|.+....|++.-|..+|+-++..+|++.+++.+||.+-.+.|+.++|..++..+.+..|....
T Consensus 400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999997644
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=5.1e-18 Score=188.42 Aligned_cols=243 Identities=15% Similarity=0.092 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
+++|+..|+++++.+|+++.++..+|.++... +++++|...++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 45555555555555555555555555554422 224555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 200 (811)
|+.+|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+++..|++++|+..+++++...
T Consensus 357 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555444444444555555555555555555443
Q ss_pred -CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH
Q 003548 201 -PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (811)
Q Consensus 201 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (811)
|+++. .+..+|.++...|++++|...+.++... .+........++..+...| ++|...++.++..... ..
T Consensus 437 ~p~~~~--~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~ 507 (553)
T PRK12370 437 LQDNPI--LLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-ID 507 (553)
T ss_pred cccCHH--HHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-hh
Confidence 33332 3445555555555555555555554433 3444444455555555554 2444444443332211 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHH
Q 003548 280 DLITEVADTLMSLGHSNSALKY 301 (811)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~ 301 (811)
........++.-.|+-+.+..+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH
Confidence 1122244444444554444444
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=3.1e-17 Score=174.34 Aligned_cols=293 Identities=15% Similarity=0.107 Sum_probs=153.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHHcCChHHHHHHHHHHHccCCCCHHHH-HHHHHHHHh
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-GLAHSALGNHKSAFDFYVIAAHLSPKDSALW-KQLLTFAVQ 114 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~ 114 (811)
.+..|...+..|+++.|.+.+.+.....+ .+..++.+ +.+....|+++.|..++.++.+.+|++.... ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 45566666667777777766655444322 23333333 4444677777777777777777666654332 333666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK--------TGAQLFLKCGQT 186 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~ 186 (811)
.|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.++.+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 777777777777777777777777777777777777777777777666665554433221 111111111112
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (811)
Q Consensus 187 ~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 266 (811)
+...+.++..-+.. +..+.+...++..+...|+.++|...
T Consensus 246 ~~l~~~w~~lp~~~----------------------------------------~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 246 EGLKRWWKNQSRKT----------------------------------------RHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHhCCHHH----------------------------------------hCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22222222222222 33344444444445555555555555
Q ss_pred HHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Q 003548 267 FADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (811)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (811)
+++.++..+ ++......+.+ ..++.++++..+++..+. .|+++..+..+|.++...+++++|.++|+++++..|+
T Consensus 286 L~~~l~~~~--~~~l~~l~~~l--~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLKRQY--DERLVLLIPRL--KTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHhcCC--CHHHHHHHhhc--cCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 544444221 22222222221 225555555555555543 5555555555555555555555555555555555554
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 347 NIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 347 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
+.. +..++.++.+.|+.++|.++|++++.
T Consensus 361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 AYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322 33455555555555555555555443
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.9e-17 Score=160.35 Aligned_cols=310 Identities=13% Similarity=0.039 Sum_probs=265.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 119 (811)
.|.++....-+.-+..++-+-...-|++...+..+|.+++..|++++|+..|+++..++|.+....-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 34444444445555556666677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
+-.......+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 98888888888887777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHH-HH-HHHcCCHHHHHHHHHHhhhccccc
Q 003548 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG-IC-YLRLGNMEKAEILFADLQWKNAID 277 (811)
Q Consensus 200 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la-~~-~~~~g~~~~A~~~~~~~~~~~~~~ 277 (811)
.|...+ .|..|..+|...|.+.+|...-+.++.. .+.+...+..+| .+ +..-.--++|...+++.+...| .
T Consensus 364 ap~rL~--~Y~GL~hsYLA~~~~kEA~~~An~~~~~----~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P-~ 436 (564)
T KOG1174|consen 364 APYRLE--IYRGLFHSYLAQKRFKEANALANWTIRL----FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP-I 436 (564)
T ss_pred chhhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHH----hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC-c
Confidence 988775 7889999999999999999999998888 455556666564 33 3333446889999999999988 4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003548 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (811)
...+...++.++...|.+++++.++++.+. ...+...+..+|.+....+.+++|...|..++.++|.+..+...+-.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 888889999999999999999999999885 455777899999999999999999999999999999998777666554
Q ss_pred H
Q 003548 358 L 358 (811)
Q Consensus 358 ~ 358 (811)
-
T Consensus 515 E 515 (564)
T KOG1174|consen 515 E 515 (564)
T ss_pred H
Confidence 4
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=1.5e-17 Score=176.67 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=183.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVE 148 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~ 148 (811)
.+..|......|++++|.+...++....+ .+..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34555566666777777766665544332 23333333 444466777777777777777666665432 2334667777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcccHHHHHH
Q 003548 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVID-LLVAILMENNAYEKTLQ 227 (811)
Q Consensus 149 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~ 227 (811)
.|++++|...++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++. ... .....
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~--~~~~l~~~a------------ 231 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE--HRAMLEQQA------------ 231 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH--HHHHHHHHH------------
Confidence 777777777777777777777777777777777777777777666666665544321 100 00010
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 003548 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (811)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (811)
+..+........+.+.....++.+....+ +++.+...++..+...|+.++|...+++.++
T Consensus 232 -------------------~~~l~~~~~~~~~~~~l~~~w~~lp~~~~-~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 232 -------------------WIGLMDQAMADQGSEGLKRWWKNQSRKTR-HQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -------------------HHHHHHHHHHhcCHHHHHHHHHhCCHHHh-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00111111112233444455555544444 5889999999999999999999999999986
Q ss_pred ccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccC
Q 003548 308 NAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 382 (811)
Q Consensus 308 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 382 (811)
.+.++......+.+ ..++.+++++..++.++..|+++..+..+|.++...|++++|.+.|+++++..|++.
T Consensus 292 --~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 292 --RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred --cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 35566655555554 449999999999999999999999999999999999999999999999999999865
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1.2e-17 Score=169.85 Aligned_cols=238 Identities=13% Similarity=0.046 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHHHHHhhCC---C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSP---N-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (811)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|.++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3466788888888886433 3 46778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003548 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (811)
Q Consensus 123 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 202 (811)
..|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++.... ...+....+++++|+..+.+.....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999998874222 122344567889999999776654332
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH
Q 003548 203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (811)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (811)
.. + ..+.+....|+...+ ..+..+.+... .-.+....+++.+|.++...|++++|+.+|++++..+|.+..
T Consensus 198 ~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 EQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred cc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 22 1 134444555665443 23333332110 002334566777777777777777777777777776665566
Q ss_pred HHHHHHHHHHHH
Q 003548 280 DLITEVADTLMS 291 (811)
Q Consensus 280 ~~~~~la~~~~~ 291 (811)
+..+.+..+...
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 655555444433
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3e-18 Score=174.02 Aligned_cols=257 Identities=18% Similarity=0.231 Sum_probs=205.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 116 (811)
-|..|..+++.|++.+|.-.|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 003548 117 DTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTA 187 (811)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~ 187 (811)
.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999998877643321110 00011112224455567777777777 68899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 267 (811)
Q Consensus 188 ~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 267 (811)
+|+.+|+.++...|++.. .|+.||-.+....+.++|+..|.+|+++ .|..+.+++++|.+++.+|.|++|..+|
T Consensus 448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999875 7999999999999999999999999999 7888899999999999999999999999
Q ss_pred HHhhhcccc---------cHHHHHHHHHHHHHHcCChHHHH
Q 003548 268 ADLQWKNAI---------DHADLITEVADTLMSLGHSNSAL 299 (811)
Q Consensus 268 ~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A~ 299 (811)
-.++...+. .+..+|..|-.++...++.+-+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 887764332 11235555555555555555433
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=3.8e-17 Score=147.13 Aligned_cols=205 Identities=19% Similarity=0.137 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
.......+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+.++|++.+++.+.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
.++.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|.+.|+++++.+|+.+.....++..++..|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999999983 345678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 189 A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
|..++++.....+-.. ..+.....+-...|+-+.+-.+=.+....+|
T Consensus 192 Ar~~~~~~~~~~~~~A--~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGGAQA--ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhcccccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999988777433 4677778888889999988888777777743
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.7e-14 Score=139.39 Aligned_cols=471 Identities=14% Similarity=0.060 Sum_probs=312.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003548 56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135 (811)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 135 (811)
.|+..++.+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+++++.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 34445555555667777778877788888888888888888877778888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003548 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215 (811)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~ 215 (811)
...|+....+-..+|+...|.++|++.+...| +..+|......-.+.+..+.|...|++.+-.+|+-. .|...+..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyarF 216 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYARF 216 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHHH
Confidence 77777777777778888888888888887777 456777777777777788888888888777776543 56677777
Q ss_pred HHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHH-HHHHHHHHHHHcCC
Q 003548 216 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD-LITEVADTLMSLGH 294 (811)
Q Consensus 216 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~ 294 (811)
-.+.|+..-|..+|+++++.+++ +.....+....+..-..+..++.|..+|+-++..-|..... ++......--+-|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 78888888888888888777543 22333455566666667777888888888877776654333 23333333333333
Q ss_pred ---hHHHHH-----HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCH---------HHHHHHHH-
Q 003548 295 ---SNSALK-----YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI---------DARLTLAS- 356 (811)
Q Consensus 295 ---~~~A~~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~- 356 (811)
.++++- .|+..+.. +|.+-++|+..-.+....|+.+.-.+.|++|+...|... -.|.+.+.
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 334443 34455544 677777888777777777888888888888887766421 12222221
Q ss_pred HHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHh
Q 003548 357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKV 436 (811)
Q Consensus 357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 436 (811)
.-....+.+.+.++|+.++++-|...- .-+.++...|....++.+...|..++-.+|-..++.-
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkkF--------tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-------- 438 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKKF--------TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-------- 438 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCcccc--------hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh--------
Confidence 113356777888888888777776432 3345667777777777888888777776665543321
Q ss_pred hhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhh
Q 003548 437 KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE 516 (811)
Q Consensus 437 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (811)
+|.|...+..... .-.|-+++..+ |
T Consensus 439 -----------------------lFk~YIelElqL~--efDRcRkLYEk------------------f------------ 463 (677)
T KOG1915|consen 439 -----------------------LFKGYIELELQLR--EFDRCRKLYEK------------------F------------ 463 (677)
T ss_pred -----------------------HHHHHHHHHHHHh--hHHHHHHHHHH------------------H------------
Confidence 1111110000000 00111111100 0
Q ss_pred hcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHH
Q 003548 517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCA 596 (811)
Q Consensus 517 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~ 596 (811)
+...|++..+...+|.+-..+|..+-|..+++-|+.-+.. +....|--..+..-+..|.++.|..++
T Consensus 464 ---------le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l----dmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 464 ---------LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL----DMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred ---------HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc----ccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 1145688888999999999999999999999999852221 222233334455555678999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHH
Q 003548 597 KYILQLHPYSLSAWNCYYKVL 617 (811)
Q Consensus 597 r~~~~~~p~~~~~~~~~~~~~ 617 (811)
+++++..+... .|.-|...-
T Consensus 531 erlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 531 ERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHhcccch-HHHhHHHHh
Confidence 99999988777 998776543
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.3e-16 Score=158.70 Aligned_cols=204 Identities=21% Similarity=0.198 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
.+.....++..|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+...+..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34456778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 187 (811)
.++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++...|.++.++..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998853 4566788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 188 ~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
+|...+++++...|.++. .+..++.++...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988766553 5667888889999999998887776544
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.7e-16 Score=142.98 Aligned_cols=210 Identities=20% Similarity=0.219 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003548 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (811)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~ 216 (811)
.+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+ ++++.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999987 799999999
Q ss_pred HHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChH
Q 003548 217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN 296 (811)
Q Consensus 217 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 296 (811)
+.+|++++|...|++++.. +..+.....+.++|.|..+.|+++.|...|++.+..+| ..+.....++...+..|+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccch
Confidence 9999999999999999875 33566778899999999999999999999999999988 48889999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHH
Q 003548 297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 352 (811)
Q Consensus 297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 352 (811)
.|..+++..... .+.....+....++....|+-+.|..+=.+.....|...+.-.
T Consensus 191 ~Ar~~~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 191 PARLYLERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 999999988866 4567777777778888899999999888888888998876543
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=9.2e-17 Score=163.26 Aligned_cols=243 Identities=16% Similarity=0.095 Sum_probs=171.6
Q ss_pred cCChHHHHHHHHHHHccCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 81 LGNHKSAFDFYVIAAHLSP---K-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156 (811)
Q Consensus 81 ~g~~~~A~~~~~~a~~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (811)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567888888988886443 3 36779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Q 003548 157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (811)
Q Consensus 157 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 236 (811)
..|+++++++|++..++..+|.++...|++++|++.++++++.+|+++. ......+....+++++|+..+.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999998863 1222234455778999999997766441
Q ss_pred ccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHH
Q 003548 237 FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 316 (811)
Q Consensus 237 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 316 (811)
+ +.. +. .+.+....|+..++ ..+..+..... ...+. .|..+.+
T Consensus 196 ~---~~~---~~-~~~~~~~lg~~~~~-~~~~~~~~~~~----------------------------~~~~l-~~~~~ea 238 (296)
T PRK11189 196 D---KEQ---WG-WNIVEFYLGKISEE-TLMERLKAGAT----------------------------DNTEL-AERLCET 238 (296)
T ss_pred C---ccc---cH-HHHHHHHccCCCHH-HHHHHHHhcCC----------------------------CcHHH-HHHHHHH
Confidence 1 111 11 34445556665443 23333221111 00011 2234556
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC
Q 003548 317 YLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLEEAK 363 (811)
Q Consensus 317 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 363 (811)
|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+....++
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666664 555555555555544433
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.8e-15 Score=155.55 Aligned_cols=381 Identities=15% Similarity=0.108 Sum_probs=245.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 108 (811)
+.|.....+--+|..+...|+-++|.......++.++.+..+|..+|.++....+|++|+.+|+.|+.+.|+|...|..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44555566667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH-----HHHHHHHHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF---PDNV-----DATKTGAQLF 180 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~-----~~~~~la~~~ 180 (811)
+.+..++++++-....-.+.++..|..-..|...+..+...|++..|...++...+.. |+.. +.......+.
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888877654 3221 2222233333
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCH
Q 003548 181 LKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM 260 (811)
Q Consensus 181 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 260 (811)
...|.+++|.+.+...-..--+.. ......+.++...+++++|...+...+.. .|.+...+..+-.++.+..+-
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkl--a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~ 269 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKL--AFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDM 269 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHH--HHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhh
Confidence 344444444433332211111111 01223344444444444444444444443 222222222222222111111
Q ss_pred HHHH-H--------------------------------------------------------------HHHHhh------
Q 003548 261 EKAE-I--------------------------------------------------------------LFADLQ------ 271 (811)
Q Consensus 261 ~~A~-~--------------------------------------------------------------~~~~~~------ 271 (811)
-+++ . .+++++
T Consensus 270 ~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 270 LEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhh
Confidence 1111 1 111111
Q ss_pred -hc-------------ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 003548 272 -WK-------------NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFF 337 (811)
Q Consensus 272 -~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 337 (811)
.. .|..-...++.++..+...|+++.|..+++.++.. .|..++.+..-|+++...|++++|..++
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00 11112334556666777777777777777777754 6777777777777777777777777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCC--CCCChhhhhHHHHHHHHHHHHhcCCchhHHH
Q 003548 338 YKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS--DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVD 415 (811)
Q Consensus 338 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 415 (811)
..+.++|-.|.-+...-|.-..+.++.++|.++....-.... +... .+.+-.| ....-|.+|.++|++..|+.
T Consensus 429 ~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-~~~~~L~~mqcmW----f~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 429 DEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-GAVNNLAEMQCMW----FQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred HHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc-chhhhHHHhhhHH----HhHhhhHHHHHHHHHHHHHH
Confidence 777777665555545566666777777777766654333221 1100 0111223 34556788888888888887
Q ss_pred hhhHhh
Q 003548 416 AIFPLV 421 (811)
Q Consensus 416 ~~~~~l 421 (811)
-|..+-
T Consensus 504 kfh~i~ 509 (700)
T KOG1156|consen 504 KFHEIE 509 (700)
T ss_pred HHhhHH
Confidence 766544
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=7.2e-17 Score=164.08 Aligned_cols=263 Identities=14% Similarity=0.107 Sum_probs=215.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 184 (811)
-+..|..+++.|++.+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHH-----HHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCC
Q 003548 185 QTARSIGILEEYLKVHPSDADLSV-----IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN 259 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 259 (811)
.-.+|+.++.+-+...|....... ......-......+..-.+.|-.+....+ ...++++...||.+|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchH
Confidence 999999999999887654321000 00000001111123334445555555522 23788999999999999999
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 003548 260 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYK 339 (811)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 339 (811)
|++|+.+|+.++...| .+..+|..+|-.+....+.++|+..|++++++ .|....+++++|.++..+|.|++|.++|-.
T Consensus 446 fdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999988 49999999999999999999999999999988 999999999999999999999999999999
Q ss_pred HHHhcCC----------CHHHHHHHHHHHHHcCCHHHHHhhc
Q 003548 340 ALDRFED----------NIDARLTLASLLLEEAKEEEAITLL 371 (811)
Q Consensus 340 al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~ 371 (811)
||.+.+. +..+|..|-.++...++.|-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9988654 1357777777788888877665554
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.1e-15 Score=145.23 Aligned_cols=360 Identities=17% Similarity=0.124 Sum_probs=259.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003548 44 QYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (811)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (811)
+....+|..|+.+++-.+..+.+. ......+|.|++.+|+|++|+..|.-+...+..+...+.+||.+++-.|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 456778888888888776554432 2556678888888899999988888888766667788888888888888888887
Q ss_pred HHHHHHHH--------------cCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003548 123 YYIRQAIR--------------AEP------------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (811)
Q Consensus 123 ~~~~~al~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 176 (811)
....++-+ ++. +..+-...+|.+....-.|.+|+++|.+++..+|+....-..+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 76655422 110 1122345677777788889999999999999999888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHH-------------------------
Q 003548 177 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH------------------------- 231 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------------- 231 (811)
|.+|.++.-++-+.+++.-.+...|+++- +.+..+...++.=+-..|..-...
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 99999999999999999999999999874 555555555443221122221111
Q ss_pred ---HHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCCh-------HHHHHH
Q 003548 232 ---AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHS-------NSALKY 301 (811)
Q Consensus 232 ---a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~ 301 (811)
+++..|+--..-++++.+++..|.++++..+|..+.+.+-.. .|.-+...|.+....|+- .-|...
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 222222222334578899999999999999999998887433 455566666666666643 344444
Q ss_pred HHHHhhcc-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcc
Q 003548 302 YHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 302 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (811)
|+-+-... .-+.......+|.+++-..++++.+.++...-...-++....+++++.+...|++.+|.+.|-+.....-.
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 44332221 12334456678888888899999999998888888888889999999999999999999999877655433
Q ss_pred cCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHh
Q 003548 381 DMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (811)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (811)
+ +-.-...++++|.+.|++.-|.+++.+.
T Consensus 426 n-----------~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 426 N-----------KILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred h-----------hHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 3 1224567899999999999998887554
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=4.9e-15 Score=139.68 Aligned_cols=267 Identities=18% Similarity=0.104 Sum_probs=208.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC-----HHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQLLTF 111 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~ 111 (811)
-+-.|..++-..+.++|+..|.++++.+|...++...||..+...|..+.|+..-+..+. .|+. ..+...||.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 344567777888889999999999999999999999999999999999999988766554 4443 2457788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCH
Q 003548 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCGQT 186 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~ 186 (811)
|+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.+... ..+..+|..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 88889999999999888776555677888888899999999999999888888877652 4566777777888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (811)
Q Consensus 187 ~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 266 (811)
+.|+..+.++++.+|+... +-..+|.+....|+|+.|++.++.+++.. ...-..+.-.+..||..+|+.++....
T Consensus 197 d~A~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 197 DRARELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8889999999888888886 55688888888999999998888888772 233456777788888888888888888
Q ss_pred HHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC
Q 003548 267 FADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD 312 (811)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 312 (811)
+.++....+ .+++...++..-....-.+.|..++.+-+.. .|.
T Consensus 272 L~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt 314 (389)
T COG2956 272 LRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR-KPT 314 (389)
T ss_pred HHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCc
Confidence 888877655 4555566666666666677777777666644 443
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.6e-14 Score=143.76 Aligned_cols=368 Identities=14% Similarity=0.158 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
...++...+.+...|+|++|.+...+++...|++..+....-.+..+.++|++|+...++-..... +....+..+.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHH
Confidence 367888888999999999999999999999999999999999999999999999966554332221 2222378899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (811)
Q Consensus 114 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (811)
+.+..++|+.+++ ..++.+..+....|.+++++|+|++|+.+|+.+++.+.++.+.......+-.... -. .+ .
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~-~~-~ 163 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQ-VQ-L 163 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hh-HH-H
Confidence 9999999999998 4566777789999999999999999999999999887776655443332221110 01 11 3
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHh----ccCCCC-------hHHHHHHHHHHHHHcCCHHH
Q 003548 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKEL-------PLKLKVKAGICYLRLGNMEK 262 (811)
Q Consensus 194 ~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~-------~~~~~~~la~~~~~~g~~~~ 262 (811)
.+.....|++ ....+++.+.++...|+|.+|++.+++++.+. ..++.. -..+...++.++..+|+.++
T Consensus 164 ~q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3333444432 24578999999999999999999999995542 111111 12467788999999999999
Q ss_pred HHHHHHHhhhcccccHHHH---HHHHHHHHHHcCChH-HHHHHHHHHhhc---------cCCCCHHHHHHHHHHHHHhcc
Q 003548 263 AEILFADLQWKNAIDHADL---ITEVADTLMSLGHSN-SALKYYHFLETN---------AGTDNGYLYLKLAECYLSLKE 329 (811)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~-~A~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~ 329 (811)
|...|..++..++.+.+.. -+++..+-....-++ .++..++..... .......++.+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998887654332 222221111111111 122222211100 111233455666666666676
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCC
Q 003548 330 RAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM 409 (811)
Q Consensus 330 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 409 (811)
-+.+.+.....-...|...--.........+...+.+|.+++....+.+|... ..+.+.++++...+|+
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-----------~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-----------KVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-----------HHHHHHHHHHHHhcCC
Confidence 66666655544444444332223333334444478899999998888888752 3488899999999999
Q ss_pred chhHHHhhhHhh
Q 003548 410 PEDFVDAIFPLV 421 (811)
Q Consensus 410 ~~~A~~~~~~~l 421 (811)
++.|++++....
T Consensus 392 ~~~A~~il~~~~ 403 (652)
T KOG2376|consen 392 PEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHHHHh
Confidence 999999887555
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=5.3e-16 Score=154.22 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=152.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003548 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (811)
Q Consensus 67 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 146 (811)
.+..+..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHH
Q 003548 147 VEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~ 224 (811)
...|++++|+..+++++... +.....+..+|.++...|++++|...+++++..+|++.. .+..++.++...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHH
Confidence 88888888888888887643 344567777788888888888888888888877777654 56677888888888888
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003548 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (811)
Q Consensus 225 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 271 (811)
|...+++++.. .+.....+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888877766 34445555566777777777777777666553
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=9.8e-17 Score=155.90 Aligned_cols=286 Identities=17% Similarity=0.149 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 003548 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (811)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 111 (811)
........+|+.++...+|.+|+..+..++...|+++..|...+.++...|++++|....++.+.+.|..+......+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHH------------HcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003548 112 AVQKGDTAQAMYYIRQAI------------RAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 173 (811)
+...++..+|...++..- .+- |.-..+....+.++...|++++|...--.++++++.+.+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 999988888876665211 000 22234556677888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003548 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (811)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 253 (811)
+..+.++...++.+.|+..|++++.++|+....-. .+. .+.....+-.-|.-
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~------~~~----------------------~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS------ASM----------------------MPKKLEVKKERGND 258 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHh------Hhh----------------------hHHHHHHHHhhhhh
Confidence 88888888888888888888888888887654211 000 01111223334444
Q ss_pred HHHcCCHHHHHHHHHHhhhcccc---cHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccH
Q 003548 254 YLRLGNMEKAEILFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330 (811)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 330 (811)
.++.|++..|.+.|..++..+|. .+..+|.+.+.+....|+..+|+...+.++.+ ++....++...|.|+..++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665555542 24455666666677777777777777766665 666666677777777777777
Q ss_pred HHHHHHHHHHHHhcCC
Q 003548 331 AHAIMFFYKALDRFED 346 (811)
Q Consensus 331 ~~A~~~~~~al~~~p~ 346 (811)
++|++.|+++++...+
T Consensus 338 e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7777777777766544
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.8e-14 Score=135.93 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=224.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHH
Q 003548 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFY 146 (811)
Q Consensus 72 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 146 (811)
+..|.-+.-.++.++|+..|..+++.+|...++...||.++...|..+.|+...+..++ .|+. .-+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44566677788999999999999999999999999999999999999999998877665 4543 34678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcccHH
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILMENNAYE 223 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~~l~~~~~~~g~~~ 223 (811)
...|-++.|...|..+.....--..+...+..+|....++++|++.-++..+..+..... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887655567888999999999999999999999999988876542 23556777777788899
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
.|...+.++++. ++....+...+|.+....|+++.|++.++.+++.+|.--+.+...+..+|...|+.++.+..+.
T Consensus 198 ~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 198 RARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999988 7888888889999999999999999999999998887778888889999999999999999998
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCH
Q 003548 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (811)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (811)
++.+. ...+.+-..++..-....-.+.|...+.+-+...|+-.
T Consensus 274 ~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 274 RAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 88754 34555666667777777777888888888888888643
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=1e-14 Score=154.81 Aligned_cols=312 Identities=16% Similarity=0.099 Sum_probs=193.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003548 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140 (811)
Q Consensus 64 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 140 (811)
+|+++.++..+|.++...|+++.|...+.++....|.+ .......+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67777777777777777777777777777766665533 344555677777777777777777777777777776655
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003548 141 HLASFYVEIGDY----EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (811)
Q Consensus 141 ~la~~~~~~g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~ 216 (811)
. +..+...|++ ..+...+.......|....+...+|.++...|++++|+..++++++..|++.. ++..++.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence 4 4444444333 33333333322344555566667777777777777777777777777777754 566777777
Q ss_pred HHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-cHHHHH-H--HHHHHHHHc
Q 003548 217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLI-T--EVADTLMSL 292 (811)
Q Consensus 217 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-~--~la~~~~~~ 292 (811)
...|++++|+.++.+++...+.+.......+..++.++...|++++|+..+++++...+. ...... . .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 777778888777777776633222222344556777777778888888777776543331 111111 0 222233333
Q ss_pred CChHHHHHH--HH-HHhhc-cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHH
Q 003548 293 GHSNSALKY--YH-FLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED---------NIDARLTLASLLL 359 (811)
Q Consensus 293 g~~~~A~~~--~~-~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~ 359 (811)
|....+..+ +. ..... ..+.........+.++...|+.++|...++.+...... ...+....+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 432222222 11 11111 01122233345777788888888888888877654322 3556677888888
Q ss_pred HcCCHHHHHhhcCCCCCCC
Q 003548 360 EEAKEEEAITLLSPPKDLD 378 (811)
Q Consensus 360 ~~g~~~~A~~~~~~a~~~~ 378 (811)
..|++++|++.+.+++...
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 9999999999988877654
No 78
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=1.5e-14 Score=145.98 Aligned_cols=222 Identities=14% Similarity=0.120 Sum_probs=190.3
Q ss_pred CCCHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHccCCCCHHHHH
Q 003548 29 KLSPGVTKMLGEASL-QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
..+++....++.-.. +...+.+++|+..+.++|..+|++..+|...+.++..+| ++++++.++.+++..+|++..+|.
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 344555555543332 455789999999999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 003548 107 QLLTFAVQKGDT--AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC- 183 (811)
Q Consensus 107 ~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~- 183 (811)
..+.++...|.. ++++.++.++++.+|.+..+|..++.++...|++++|++.+.++++.+|.+..+|...+.+....
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 999999888874 78899999999999999999999999999999999999999999999999999999999988776
Q ss_pred --CCH----HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003548 184 --GQT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (811)
Q Consensus 184 --g~~----~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 253 (811)
|.+ ++++.+..+++..+|++.. +|+.++.++.. .+...+|+..+.+++.. .+....++..++.+
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~ 264 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDL 264 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHH
Confidence 333 4788888999999999987 78899998887 34567788888887765 56667777777777
Q ss_pred HHH
Q 003548 254 YLR 256 (811)
Q Consensus 254 ~~~ 256 (811)
+..
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 765
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=4.2e-15 Score=156.18 Aligned_cols=249 Identities=20% Similarity=0.216 Sum_probs=191.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHh--
Q 003548 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR-- 236 (811)
Q Consensus 167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-- 236 (811)
|.-..+...++..|...|++++|+..++.+++. .|.-. .....+|.+|...+++.+|+.+|++++.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va--~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA--SMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444456666888888888888888888888776 22211 234568888888888888888888888763
Q ss_pred --ccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-------ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 003548 237 --FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-------NAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (811)
Q Consensus 237 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (811)
+..+|....++.+++.+|...|++++|..++++++.. .+++-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566667788888888888888888888888876542 2334566788899999999999999999997665
Q ss_pred c-------cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHhhcC
Q 003548 308 N-------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--------DNIDARLTLASLLLEEAKEEEAITLLS 372 (811)
Q Consensus 308 ~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (811)
. .++.-+..+.++|.+|..+|++++|.++|+++++... ........+|..|.+.+++++|.+.|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 4 1223467889999999999999999999999998742 235567889999999999999999999
Q ss_pred CCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhh
Q 003548 373 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVC 422 (811)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 422 (811)
++..+. ....++.+.. ...+.+|+.+|..+|++++|+++...++.
T Consensus 434 ~~~~i~-~~~g~~~~~~----~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIM-KLCGPDHPDV----TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHH-HHhCCCCCch----HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888776 2222222222 23789999999999999999998887763
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=6.7e-14 Score=148.60 Aligned_cols=311 Identities=17% Similarity=0.060 Sum_probs=231.1
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 107 (811)
|.-...+...|..+...|+.++|...+.++.+..|.+ .+.....+.++...|++++|...+++++..+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3445667888899999999999999999998887754 5567888999999999999999999999999999987775
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003548 108 LLTFAVQKGD----TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (811)
Q Consensus 108 la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 183 (811)
+..+...|+ ...+...+.......|....+...+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 555544444 444444444433456777778888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHH-H--HHHHHHHHcC
Q 003548 184 GQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK-V--KAGICYLRLG 258 (811)
Q Consensus 184 g~~~~A~~~~~~~l~~~p~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~--~la~~~~~~g 258 (811)
|++++|+..+++++...|.++.. ..+..++.++...|++++|+..+++++...+. ....... . .+...+...|
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE--SDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC--CChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999988764432 24567999999999999999999998654111 1111111 1 2222333344
Q ss_pred CHHHHHHH--H-HHhhhccc-ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCC--------CCHHHHHHHHHHHHH
Q 003548 259 NMEKAEIL--F-ADLQWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT--------DNGYLYLKLAECYLS 326 (811)
Q Consensus 259 ~~~~A~~~--~-~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~la~~~~~ 326 (811)
....+... + .......+ ..........+.++...|+.++|...++.+...... ....+....+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333222 1 11111111 112222346788889999999999999887654222 135566788999999
Q ss_pred hccHHHHHHHHHHHHHhc
Q 003548 327 LKERAHAIMFFYKALDRF 344 (811)
Q Consensus 327 ~g~~~~A~~~~~~al~~~ 344 (811)
.|++++|...+..++...
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999999999764
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=2.1e-14 Score=151.07 Aligned_cols=244 Identities=21% Similarity=0.246 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 003548 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF---- 166 (811)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 166 (811)
|.-..+...++..|..+|+++.|+..++++++. .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445556788888888888888888888776 34334445557888888888888888888877652
Q ss_pred -CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Q 003548 167 -PDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-----DAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (811)
Q Consensus 167 -p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 236 (811)
+++ ..++.+||.+|...|++++|..++++++++... .+. ...+..++.++...+++++|..+++++++++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 222 356777788888888888888888777765321 111 1246667777777888888888888777664
Q ss_pred c----cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc-------ccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003548 237 F----SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-------IDHADLITEVADTLMSLGHSNSALKYYHFL 305 (811)
Q Consensus 237 ~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (811)
. ..++.-..++.++|.+|...|++++|...+++++.... ......+..+|..+.+.+.+.+|...|.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3 22234456677778888888888888887777765321 123445677777777777777777777654
Q ss_pred hhc------cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 003548 306 ETN------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (811)
Q Consensus 306 ~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (811)
... ..|+....+.+||.+|..+|+++.|+++.++++.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 3345556777777778888888888777777764
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.8e-12 Score=127.06 Aligned_cols=533 Identities=11% Similarity=0.078 Sum_probs=374.3
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003548 91 YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (811)
Q Consensus 91 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 170 (811)
|+..+..+--+...|...|.--..++++..|...+++|+..+..+...|...+.+-++......|..++++++.+-|.-.
T Consensus 62 fEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 44444555556788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 003548 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA 250 (811)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 250 (811)
..|+....+-..+|+..-|.++|++-++-.|+.. +|......-.+.+..+.|..+|++.+-. + .....+...
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq---aW~sfI~fElRykeieraR~IYerfV~~----H-P~v~~wiky 213 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ---AWLSFIKFELRYKEIERARSIYERFVLV----H-PKVSNWIKY 213 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHhhHHHHHHHHHHHHhee----c-ccHHHHHHH
Confidence 9999999999999999999999999999998865 6888888888899999999999998866 3 466778899
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhccccc--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHH
Q 003548 251 GICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN--GYLYLKLAECYLS 326 (811)
Q Consensus 251 a~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~~ 326 (811)
+..-.+.|+..-|...|+.+++....+ ...++...|..-..+..++.|.-+|+-+++. -|.+ ..++-.....-.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHH
Confidence 999999999999999999998754433 3345566677777788999999999999876 4444 3344444444445
Q ss_pred hccH---HHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHH
Q 003548 327 LKER---AHAI-----MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIM 398 (811)
Q Consensus 327 ~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 398 (811)
-|+. ++++ -.|++.+..+|-|.++|+....+....|+.+.-.+.|++|+..-|... .+..|.. -++.
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~----ekr~W~R-YIYL 367 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS----EKRYWRR-YIYL 367 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh----HHHHHHH-HHHH
Confidence 5653 3343 358888999999999999999999999999999999999998777632 2344521 1222
Q ss_pred HHHHHH---HhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHHH
Q 003548 399 KLCHIY---RAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLV 475 (811)
Q Consensus 399 ~la~~~---~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (811)
-+--++ ....+.+.+.++|+..++-- ++..|
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lI--------------------------------PHkkF-------------- 401 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLI--------------------------------PHKKF-------------- 401 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhc--------------------------------Ccccc--------------
Confidence 111111 11223333333332222110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHHH
Q 003548 476 AARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEI 555 (811)
Q Consensus 476 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~~ 555 (811)
.-..+.+.+|....+.-+...|..+
T Consensus 402 -------------------------------------------------------tFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 402 -------------------------------------------------------TFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHcccHHHHHH
Confidence 1123566788888899999999999
Q ss_pred HHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHHhCCCChhHHHHHHHHHHhhcccccccchhhHHHH
Q 003548 556 INLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIR 635 (811)
Q Consensus 556 ~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (811)
+..|+...+. + + +.-..+.+-++-+.++.+..++.+.+.-.|.+-.+|.-|..+-...|+|. ++...+.
T Consensus 427 LG~AIG~cPK----~-K--lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd----RaRaife 495 (677)
T KOG1915|consen 427 LGNAIGKCPK----D-K--LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD----RARAIFE 495 (677)
T ss_pred HHHHhccCCc----h-h--HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH----HHHHHHH
Confidence 8888753321 1 1 22223333344578888999999999999999999999888777777732 4444444
Q ss_pred HHHHhcCCCCCchhhhcch--hhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccch------HHHHHH
Q 003548 636 YLRAKYKDCVPPIIISGHQ--FTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNK------HQCLAQ 707 (811)
Q Consensus 636 r~~~~~~~~~~~~~~~g~~--~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r------~~~~~q 707 (811)
=.+....-+.|-++...-| -...+.++.|-..|.+.++..+..+ ++...|.--...+......+- ...+..
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~ 574 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKR 574 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHH
Confidence 3444433344545555555 2557899999999999999999887 777666544433333222111 113334
Q ss_pred HHHHHHHh---Hh-hcCCC-----chhhHhHHHHHHHhchhHHHHHHHHHHH
Q 003548 708 GFAFLYNN---LR-LCEHS-----QEALYNIARACHHVGLVSLAASYYEKVL 750 (811)
Q Consensus 708 ~~~~l~~y---~~-~~~~~-----~e~~yn~gr~~~~~g~~~~Ai~~YekvL 750 (811)
|-..+.+. .+ ..++. -|++-|+-..|--.|....--.-.=+++
T Consensus 575 AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 575 ARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKV 626 (677)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHH
Confidence 44444332 21 11111 5677777777766665444433343444
No 83
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=2.3e-14 Score=144.74 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=173.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYI 125 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~ 125 (811)
.++|.+|...|+.++. ..++.++|+..+.+++.++|.+..+|...+.++...| ++++++.++
T Consensus 33 ~~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 33 TPEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred CHHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 3556666666666554 4578889999999999999999999999999999998 689999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003548 126 RQAIRAEPKDISLRIHLASFYVEIGDY--EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (811)
Q Consensus 126 ~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 203 (811)
.++++.+|++..+|..++.++...|+. ++++.+++++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999874 788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcc---cH----HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHhhh
Q 003548 204 ADLSVIDLLVAILMENN---AY----EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILFADLQW 272 (811)
Q Consensus 204 ~~~~~~~~l~~~~~~~g---~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 272 (811)
.. +|+..+.+....+ .+ ++++.+..+++.. .|.+..+|..++.++.. ++...+|...+.+++.
T Consensus 176 ~s--AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 176 NS--AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hh--HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 86 7888888876652 22 3566666666666 55666666666666655 2334455555555554
Q ss_pred cccccHHHHHHHHHHHHHH
Q 003548 273 KNAIDHADLITEVADTLMS 291 (811)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~ 291 (811)
..+ ..+.++..++.++..
T Consensus 250 ~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccC-CcHHHHHHHHHHHHh
Confidence 443 244555555555543
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.8e-14 Score=133.68 Aligned_cols=364 Identities=15% Similarity=0.099 Sum_probs=265.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHcc--------------C----
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------------S---- 98 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~---- 98 (811)
-+-.|.+++..|+|++|...|.-+...+.-+.+.+..++.|++-+|.|.+|.....++-+. +
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 3446889999999999999999999877778899999999999999999999887765321 1
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003548 99 --------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (811)
Q Consensus 99 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 170 (811)
.+..+-...||.+.+..-.|.+|+..|.+++..+|+....-..+|.+|.++.-++-+.+++.-.++..|+++
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 011133456777777788899999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------hCCCC--CCHHHHHHHHHHHHHcc
Q 003548 171 DATKTGAQLFLKCGQTARSIGILEEYLK----------------------------VHPSD--ADLSVIDLLVAILMENN 220 (811)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------------~~p~~--~~~~~~~~l~~~~~~~g 220 (811)
-+....+...++.=+-..|..-...... .-|.- .-+.+..+++..|..++
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 8888777766654322222222222111 11111 11235668888899999
Q ss_pred cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhh-------ccc-ccHHHHHHHHHHHHHHc
Q 003548 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW-------KNA-IDHADLITEVADTLMSL 292 (811)
Q Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~~~~la~~~~~~ 292 (811)
+..+|+...+.. +|..+.-+...|.++...|+---..++++.+.. ... -+...-...++..++-.
T Consensus 300 dVqeA~~L~Kdl-------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 300 DVQEAISLCKDL-------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred cHHHHHHHHhhc-------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 999999887654 567777778888888888876554444443311 110 11223356677888888
Q ss_pred CChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHhhc
Q 003548 293 GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLL 371 (811)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 371 (811)
.++++.+.++..+..- ..++....+++|.++...|++.+|.+.|-++-..+ .+..-....|+.+|...++++-|.+++
T Consensus 373 ~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 8999999999887754 67788888999999999999999999998876544 233445567999999999999999988
Q ss_pred CCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhh
Q 003548 372 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (811)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 421 (811)
-+.-. |.+. -..+-.++...+..+.+--|...|..+-
T Consensus 452 lk~~t--~~e~-----------fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 452 LKTNT--PSER-----------FSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HhcCC--chhH-----------HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 65432 2111 1234445666666666666666665543
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.1e-15 Score=144.75 Aligned_cols=288 Identities=18% Similarity=0.132 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
+-....|..++...+|..|+..+..|+...|++...|...+.+++..|++++|....++.++++|.........+.++..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 34456677788888999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcccHHHHHH
Q 003548 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQ 227 (811)
Q Consensus 149 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~ 227 (811)
.++..+|.+.++. ..++ ....|+..+++.+..+...+.. .+-..-+.++...|++++|..
T Consensus 130 ~~~~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 130 LSDLIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred hHHHHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 8888888877761 1111 1222333333333322222211 123345667777777777777
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-----------cHHHHHHHHHHHHHHcCChH
Q 003548 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----------DHADLITEVADTLMSLGHSN 296 (811)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~ 296 (811)
.--..++. ++...++++..|.|+...++.+.|+.+|++.+..+|. .....+..-|+-.++.|++.
T Consensus 191 ea~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 191 EAIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 77777777 6777777777777777777777777777777766652 34677888899999999999
Q ss_pred HHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcC
Q 003548 297 SALKYYHFLETNAGTD----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372 (811)
Q Consensus 297 ~A~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (811)
+|.+.|..++.. +|+ ++.+|.++|.+...+|+..+|+...+.++.++|....++...|.++..++++++|++.|+
T Consensus 267 ~A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 555 566889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc
Q 003548 373 PPKDLDSL 380 (811)
Q Consensus 373 ~a~~~~~~ 380 (811)
++.+...+
T Consensus 346 ~a~q~~~s 353 (486)
T KOG0550|consen 346 KAMQLEKD 353 (486)
T ss_pred HHHhhccc
Confidence 99987766
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=4e-11 Score=123.46 Aligned_cols=577 Identities=15% Similarity=0.128 Sum_probs=296.7
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHH--c------CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003548 52 QAISLLKEVVRLSPNLPETYNTLGLAHSA--L------GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (811)
Q Consensus 52 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (811)
+-.-+|+++++.-|.+...|+..-..-.. . ..|+.--.+|++++-.-.+-+..|......+..+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 34445666777777666666544322211 1 113344445555555444556666666666666676666666
Q ss_pred HHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 003548 124 YIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH- 200 (811)
Q Consensus 124 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 200 (811)
.|.+++..-|- +...|-.........|-++-++..|++.++..|... ......+...++.++|.+.+...+..+
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 66666665552 233444444455555666666667777666665542 333445556666666666666665432
Q ss_pred ------CCCCCHHHHHHHHHHHHHcccHHHH---HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003548 201 ------PSDADLSVIDLLVAILMENNAYEKT---LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (811)
Q Consensus 201 ------p~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 271 (811)
+.+. ..|..+..+..+.-+.-.. ..+++..+..+ ...-..++..||..|++.|.+++|...|++++
T Consensus 201 f~sk~gkSn~--qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 201 FVSKKGKSNH--QLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred hhhhcccchh--hHHHHHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2222 2445555554444332222 22333333332 12233566677777777777777777777765
Q ss_pred hccc--ccHHHHHHHHHH-----HHHH-------cC------ChHHHHHHHHHHhhc-----------cCCCCHHHHHHH
Q 003548 272 WKNA--IDHADLITEVAD-----TLMS-------LG------HSNSALKYYHFLETN-----------AGTDNGYLYLKL 320 (811)
Q Consensus 272 ~~~~--~~~~~~~~~la~-----~~~~-------~g------~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l 320 (811)
..-. .+...++...+. +-.. .| +.+-.+..|+.++.. .+|.+..-|...
T Consensus 276 ~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR 355 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR 355 (835)
T ss_pred HhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh
Confidence 4321 111111111100 0000 00 111222223322211 234444445444
Q ss_pred HHHHHHhccHHHHHHHHHHHHHh-cCC-----CHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhH
Q 003548 321 AECYLSLKERAHAIMFFYKALDR-FED-----NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNE 394 (811)
Q Consensus 321 a~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (811)
..++ .|+..+-+..|..|+.. +|. -...|..+|.+|...|+.+.|..+|+++....-.... --+
T Consensus 356 V~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~--------dLa 425 (835)
T KOG2047|consen 356 VKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE--------DLA 425 (835)
T ss_pred hhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH--------HHH
Confidence 3332 34555555555555543 332 1344555666666666666666666655544322111 012
Q ss_pred HHHHHHHHHHHhcCCchhHHHhhhHhhhhhhhHHHHHHHHHhhhhcchhHHHHHHhhhcCCCCCccccCCCCCCCchHHH
Q 003548 395 KIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELL 474 (811)
Q Consensus 395 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (811)
.++...|..-.+..+++.|..+++++.--.-.+.
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---------------------------------------------- 459 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---------------------------------------------- 459 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----------------------------------------------
Confidence 2444444444455555555544443321110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHhhhcHHHHHH
Q 003548 475 VAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASE 554 (811)
Q Consensus 475 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~eA~~ 554 (811)
+++++... +... .--....+...|+......|-++....
T Consensus 460 ---------------------------~~~yd~~~---pvQ~-----------rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 460 ---------------------------LEYYDNSE---PVQA-----------RLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred ---------------------------hhhhcCCC---cHHH-----------HHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 00000000 0000 000112244456666666777777777
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHhhhhhhcccCccchHHHHHHHHH--hCCCChhHHHHHHHHHHhhcccccccchhhH
Q 003548 555 IINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQ--LHPYSLSAWNCYYKVLSRMGKINSKHSKHSK 632 (811)
Q Consensus 555 ~~~~al~~~~~~~~~~~~~~l~~l~~~~~~~~~d~~~a~~~~r~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (811)
++++.+++... +|.......+++ -...-++++|.++.+-+. ..|.-.+.|+.+.- |
T Consensus 499 vYdriidLria--TPqii~NyAmfL----Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt----------------k 556 (835)
T KOG2047|consen 499 VYDRIIDLRIA--TPQIIINYAMFL----EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT----------------K 556 (835)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHH----HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH----------------H
Confidence 88888765433 222211111111 122345677777776554 47777889987732 2
Q ss_pred HHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHH
Q 003548 633 FIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFL 712 (811)
Q Consensus 633 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l 712 (811)
|+.| +...+.+.|-..|.+|+...| |.-+=.|=+.|. +-+.+++.+-.+++.+
T Consensus 557 fi~r-------------------ygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA------~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 557 FIKR-------------------YGGTKLERARDLFEQALDGCP--PEHAKTIYLLYA------KLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHH-------------------hcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH------HHHHHhhHHHHHHHHH
Confidence 2221 222345888899999999888 766666666665 4566788888899998
Q ss_pred HHhHhh-cCCCchhhHhH--HHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCccccCCCCCCCCccHHHHHHHH
Q 003548 713 YNNLRL-CEHSQEALYNI--ARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLH 789 (811)
Q Consensus 713 ~~y~~~-~~~~~e~~yn~--gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~Nl~ 789 (811)
.+.... .+.++-..||+ -++-...|. ..-.+.||||++.=|+. =.+|--.--+
T Consensus 610 erat~~v~~a~~l~myni~I~kaae~yGv-~~TR~iYekaIe~Lp~~-----------------------~~r~mclrFA 665 (835)
T KOG2047|consen 610 ERATSAVKEAQRLDMYNIYIKKAAEIYGV-PRTREIYEKAIESLPDS-----------------------KAREMCLRFA 665 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHhCChH-----------------------HHHHHHHHHH
Confidence 886543 23345556664 566666775 44578899999886542 0144444555
Q ss_pred HHHHhcCCHHHHHHHHH
Q 003548 790 LIYKNSGAVDLARQLLK 806 (811)
Q Consensus 790 ~iy~~~g~~~~a~~~~~ 806 (811)
..=.+-|..+.||.|+.
T Consensus 666 dlEtklGEidRARaIya 682 (835)
T KOG2047|consen 666 DLETKLGEIDRARAIYA 682 (835)
T ss_pred HHhhhhhhHHHHHHHHH
Confidence 66667888888888763
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=5.7e-14 Score=139.14 Aligned_cols=190 Identities=14% Similarity=0.062 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHH--
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-- 103 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-- 103 (811)
..+..+..++..|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3355666789999999999999999999999999999876 58899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003548 104 -LWKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (811)
Q Consensus 104 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 174 (811)
+++.+|.++... |++++|+..+++++..+|++..++..+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 688899999876 78999999999999999998765433322211100 0 012234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
.+|.++...|++.+|+..++++++..|+.+. ..++..+|.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788888888898888888888888887643 347888888888889988888888777665
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.62 E-value=7.7e-13 Score=141.36 Aligned_cols=141 Identities=17% Similarity=0.038 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003548 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (811)
...+++.++..|...|++++|+.++++++.. .|..++.+...|+++...|++.+|.+.++.+..+++.|--+....+..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 3467788999999999999999999999987 899999999999999999999999999999999999999888999999
Q ss_pred HHHcCCHHHHHhhcCCCCCCCcccCCC--CCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 358 LLEEAKEEEAITLLSPPKDLDSLDMNS--DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
+.+.|+.++|.+.+......+. ++.. .+.+..| .....|.+|.+.|++..|+..|..+.+..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W----f~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW----FETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999876654442 2111 0111224 56778999999999999999998887665
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=8e-12 Score=133.64 Aligned_cols=266 Identities=15% Similarity=0.155 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
..++-++.++...|++++|++.+++....-++.....-..|.++..+|++++|...|...+..+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 34566778888899999999999888888888888888899999999999999999999999999988888888777733
Q ss_pred c-----CCHHHHHHHHHHHHHcCCCCHH--------------------------------HHHHHHHHHHHcCCHHHHHH
Q 003548 115 K-----GDTAQAMYYIRQAIRAEPKDIS--------------------------------LRIHLASFYVEIGDYEKAAE 157 (811)
Q Consensus 115 ~-----g~~~~A~~~~~~al~~~p~~~~--------------------------------~~~~la~~~~~~g~~~~A~~ 157 (811)
. .+.+.-...|+......|.... ++..+-.+|....+..-...
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 2 2455566666666555543211 11111112221111111112
Q ss_pred HHHHHHHh---C------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcc
Q 003548 158 SYEQIQKL---F------------PDN--VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (811)
Q Consensus 158 ~~~~~l~~---~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g 220 (811)
++...... . |.. ..+++.+|..|-..|++++|+++++++++..|..++ .+...|.++-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e--ly~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE--LYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHCC
Confidence 22221111 0 011 124456677777777777777777777777777664 5667777777777
Q ss_pred cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc--ccc------HHHHHHHHHHHHHHc
Q 003548 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN--AID------HADLITEVADTLMSL 292 (811)
Q Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~------~~~~~~~la~~~~~~ 292 (811)
++.+|...++.+..+ +..+..+....+..+++.|+.++|...+......+ |.. ..+.....|.+|...
T Consensus 243 ~~~~Aa~~~~~Ar~L----D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 243 DLKEAAEAMDEAREL----DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CHHHHHHHHHHHHhC----ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766 55566666666666777777777776666654332 110 122234446677777
Q ss_pred CChHHHHHHHHHHh
Q 003548 293 GHSNSALKYYHFLE 306 (811)
Q Consensus 293 g~~~~A~~~~~~~~ 306 (811)
|++..|+..|..+.
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777766665544
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.5e-11 Score=120.36 Aligned_cols=293 Identities=16% Similarity=0.081 Sum_probs=151.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhc
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFAVQK 115 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~ 115 (811)
.+..|..-+..|+|.+|.....+.-+..+....++..-+.+.-++|+++.|-.++.++.+..++ ........+.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4455666666777777777777766666655566666666777777777777777777666433 234455666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH-------HHHHHHHHHHcCCHH
Q 003548 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DA-------TKTGAQLFLKCGQTA 187 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~-------~~~la~~~~~~g~~~ 187 (811)
|+++.|.....++++..|.++.++.....+|...|++.+....+.++.+..--+. +. +..+-.-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 7777777777777777777777777777777777777777766666655432221 11 111111001111111
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 267 (811)
Q Consensus 188 ~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 267 (811)
.-..+++..-..-..++. +...++.-+...|+.++|.++...+++.. -++ .+. .-.-....++...=++..
T Consensus 247 gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~-~L~--~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDP-RLC--RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHhc----cCh-hHH--HHHhhcCCCCchHHHHHH
Confidence 111122221111112222 33445555555555555555555555441 111 111 111122334444444444
Q ss_pred HHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003548 268 ADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 268 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (811)
++.+...| +++..+..+|..+++.+.|.+|..+|+.+++. ..+...+..+|.++.++|+..+|.+++++++
T Consensus 318 e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 318 EKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44444444 24455555555555555555555555544432 3344444455555555555555555555544
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.3e-11 Score=120.42 Aligned_cols=379 Identities=11% Similarity=0.025 Sum_probs=240.6
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
|.+...+.....++.+.++|++|+.+.+.-..... .....+..+.|.++++..++|+..+. ..++.+.......|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 44556667778888999999999955443322111 12223789999999999999999998 456666778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A 189 (811)
+++++|+|++|...|+..++.+.++.+.......+-.... ..+ . ..+.....|. +.+.+++.|.++...|+|.+|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999987766655443332221111 111 1 2333344444 568899999999999999999
Q ss_pred HHHHHHHHhhC-------CCC-CC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 003548 190 IGILEEYLKVH-------PSD-AD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (811)
Q Consensus 190 ~~~~~~~l~~~-------p~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 256 (811)
++.+++++.+. ..+ .+ ..+...++.++...|+.++|...|...+...+.+.+....+.+++..+-..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 99999995431 111 11 125678999999999999999999999988655555545555554433222
Q ss_pred cCCHH-HHHHHHHHhhhccc---------ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003548 257 LGNME-KAEILFADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (811)
Q Consensus 257 ~g~~~-~A~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (811)
..-++ .++..++......+ .....++.+.+.+.+..+.-+.+.+.....-.. .|....--.........
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~-~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM-SPESLFPILLQEATKVR 353 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc-CchHHHHHHHHHHHHHH
Confidence 22122 12222222111111 123345666777777777777777666544332 23322222222222333
Q ss_pred hccHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHH
Q 003548 327 LKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR 405 (811)
Q Consensus 327 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 405 (811)
...+.+|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++++.............-.. .+.+...+-..|.
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-----~P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-----LPGTVGAIVALYY 428 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-----ChhHHHHHHHHHH
Confidence 336889999999999999987 7788899999999999999999998433111110000000 0113344445566
Q ss_pred hcCCchhHHHhhhHhhhh
Q 003548 406 AKGMPEDFVDAIFPLVCE 423 (811)
Q Consensus 406 ~~g~~~~A~~~~~~~l~~ 423 (811)
+.++.+-|..++..++..
T Consensus 429 ~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKW 446 (652)
T ss_pred hccCCccHHHHHHHHHHH
Confidence 666666666666665533
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.4e-11 Score=120.69 Aligned_cols=299 Identities=16% Similarity=0.124 Sum_probs=232.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHc
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEI 149 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 149 (811)
...-|..-+..|+|.+|.....+..+..+.....+..-+...-+.|+++.|-.++.++-+..+++ ..+...++.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 33446666778999999999999888777777777788899999999999999999999985443 56788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHH--HHHHcccHHHHH
Q 003548 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVA--ILMENNAYEKTL 226 (811)
Q Consensus 150 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~--~~~~~g~~~~A~ 226 (811)
|+++.|.....++++..|.++.+......+|...|++.+...++.++-+..--+.. ..-+...+. ++.+.++-..+.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999988775433221 111111111 122222222222
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
. +....+..|..-..++.+...++.-+..+|+.++|.+..+..++..- ++.....++ ...-+++..=++..++.+
T Consensus 247 g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 G-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred H-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHH
Confidence 2 22222222322455677888889999999999999999999987754 333222222 346678888888888888
Q ss_pred hccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
+. .|+++.++..+|..+.+.+.+.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.++.++++.
T Consensus 322 ~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 76 8999999999999999999999999999999988775 46688999999999999999999887763
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=3.9e-13 Score=133.14 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=158.5
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---
Q 003548 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS--- 137 (811)
Q Consensus 64 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 137 (811)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445788999999999999999999999999999999876 57899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 003548 138 LRIHLASFYVEI--------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (811)
Q Consensus 138 ~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 209 (811)
+++.+|.++... |++++|+..|++++..+|++..++..+..+.... ... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~~---~------------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NRL---A------------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HHH---H------------HHH
Confidence 688899998876 7899999999999999999876654333221111 000 0 123
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc
Q 003548 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (811)
Q Consensus 210 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 275 (811)
..+|.++...|++.+|+..+++++..+|. .+....+++.+|.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 47889999999999999999999998543 356679999999999999999999999999877655
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=7.7e-14 Score=124.66 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003548 55 SLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 134 (811)
Q Consensus 55 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 134 (811)
..|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+.+|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 5677778877754 5567888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 135 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888777766543
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.5e-11 Score=112.43 Aligned_cols=313 Identities=13% Similarity=0.020 Sum_probs=203.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003548 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (811)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (811)
+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|.........+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36677788888888777777777777788888888888888888888888777777777777777777777777777777
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003548 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (811)
Q Consensus 124 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 203 (811)
....+.....-.......-+.+....+++..+....++.-. .++.+...+.|-+.++.|+++.|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 76665442111123344445555666666666555444311 1345666677777777777777777777777766555
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHH--HHHHhhhcccccHHHH
Q 003548 204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI--LFADLQWKNAIDHADL 281 (811)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~ 281 (811)
+. +-++++.+.++.|++..|+++..+.++.--.+.|.-. + |...+.+. ....-+....+.-.++
T Consensus 178 pl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg-----I-------Gm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 178 PL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG-----I-------GMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred ch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC-----c-------cceeccCchhcccchHHHHHHHHHHH
Confidence 54 4566777777777777777777766655211222110 0 00000000 0000000001123456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003548 282 ITEVADTLMSLGHSNSALKYYHFLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360 (811)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 360 (811)
++..+-++++.|+++.|.+.+..+-.. ...-+|..+.+++..-. .+++.+...-++-.++++|--++..-++-.+|++
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 677788899999999999887544322 12337778888775543 5667777888888889999778888899999999
Q ss_pred cCCHHHHHhhcCC
Q 003548 361 EAKEEEAITLLSP 373 (811)
Q Consensus 361 ~g~~~~A~~~~~~ 373 (811)
..-++-|..++-+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 9889999888754
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=2.4e-12 Score=121.50 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=131.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 119 (811)
-+-.|+..|+++......+... +|.. -+...++.++++..++++++.+|++...|..+|.++...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 4567888999888655543221 2211 1112677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 120 QAMYYIRQAIRAEPKDISLRIHLASFY-VEIGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
+|+.+|++++.++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+..++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999974 67777 599999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCC
Q 003548 197 LKVHPSDAD 205 (811)
Q Consensus 197 l~~~p~~~~ 205 (811)
++..|.+.+
T Consensus 171 L~l~~~~~~ 179 (198)
T PRK10370 171 LDLNSPRVN 179 (198)
T ss_pred HhhCCCCcc
Confidence 999888765
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=5.2e-13 Score=119.32 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=114.0
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003548 88 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (811)
Q Consensus 88 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 167 (811)
...|+++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999998874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003548 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (811)
Q Consensus 168 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~ 218 (811)
+++.+++.+|.++...|++++|+..|+++++..|+++. .+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 45566655443
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=2e-12 Score=122.10 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=119.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA-VQKGD--TAQAMY 123 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 123 (811)
.++.++++..++++++.+|++++.|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 124 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999886543
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.5e-11 Score=113.36 Aligned_cols=370 Identities=12% Similarity=0.019 Sum_probs=241.2
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
|.....+-..|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-.......-+.
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33555667789999999999999999999999999998888999999999999999999887765431112233444566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (811)
+.+..+++..+....++.-. .++.+.....|.+..+.|+++.|++-|+.+++...-++-+-++++.++++.|+++.|+
T Consensus 121 IkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 67778888877766655321 2567889999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhh----CCCC--------CC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCCh
Q 003548 191 GILEEYLKV----HPSD--------AD---------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP 243 (811)
Q Consensus 191 ~~~~~~l~~----~p~~--------~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 243 (811)
++...+++. .|.. ++ ..+++..+-++++.|+++.|.+.+..+-.. .....+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR--aE~elD 276 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR--AEEELD 276 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc--ccccCC
Confidence 988877764 3321 00 134566677888889998887766543211 012233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC-CHHHHHHHHH
Q 003548 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD-NGYLYLKLAE 322 (811)
Q Consensus 244 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~la~ 322 (811)
+..+.+++..- ..+++.+...-+.-++..+| -..+.+-++-.+|++..-|+-|.+++.+-......- ++..+..+-.
T Consensus 277 PvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLda 354 (459)
T KOG4340|consen 277 PVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDA 354 (459)
T ss_pred chhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHH
Confidence 44455555432 23556666666676777776 366778888888889888888888773221110000 1222222222
Q ss_pred HHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cC---CHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHH
Q 003548 323 CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE--EA---KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKII 397 (811)
Q Consensus 323 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 397 (811)
+-...-..++|.+-+...-..--+. .+..-+.+... .. ....|++-|+++++.. ..+.
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---------------LPVl 417 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---------------LPVL 417 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 2222334555555444332211110 00011111111 11 1222333333333221 2377
Q ss_pred HHHHHHHHhcCCchhHHHhhhHhhhh
Q 003548 398 MKLCHIYRAKGMPEDFVDAIFPLVCE 423 (811)
Q Consensus 398 ~~la~~~~~~g~~~~A~~~~~~~l~~ 423 (811)
+..+++|+...++..+.+.|..-++-
T Consensus 418 Ma~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 418 MAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHhhccccccHHHHHHHHHHHhh
Confidence 88999999999999998888766543
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=6.5e-09 Score=107.55 Aligned_cols=370 Identities=13% Similarity=0.102 Sum_probs=241.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT 118 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 118 (811)
...+..+|+...-...|..++..-|- +..+|-..-......|-++-++..|++-++.+|.... .....+...+++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~ 185 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRL 185 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccch
Confidence 34456677777777777777776653 3445555555555666677777777777777765532 333445556666
Q ss_pred HHHHHHHHHHHHcC-------CCC--------------------------------------HHHHHHHHHHHHHcCCHH
Q 003548 119 AQAMYYIRQAIRAE-------PKD--------------------------------------ISLRIHLASFYVEIGDYE 153 (811)
Q Consensus 119 ~~A~~~~~~al~~~-------p~~--------------------------------------~~~~~~la~~~~~~g~~~ 153 (811)
++|...+...+..+ +.+ ...|..||..|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 66666665554311 111 123566777777777777
Q ss_pred HHHHHHHHHHHhCCC--C-HHHHHHHH-----HHHHHc-------C------CHHHHHHHHHHHHhh------------C
Q 003548 154 KAAESYEQIQKLFPD--N-VDATKTGA-----QLFLKC-------G------QTARSIGILEEYLKV------------H 200 (811)
Q Consensus 154 ~A~~~~~~~l~~~p~--~-~~~~~~la-----~~~~~~-------g------~~~~A~~~~~~~l~~------------~ 200 (811)
+|...|++++..--. + ..++...+ .+...+ | +.+-.+..|+..+.. +
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 777777776654221 1 11111100 000011 1 122233334444332 2
Q ss_pred CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc---
Q 003548 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA--- 275 (811)
Q Consensus 201 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--- 275 (811)
|++.. . .+-.+-+..|+..+-+..|..++....+. ......++..+|..|...|+.+.|..+|+++....-
T Consensus 346 ~~nV~--e--W~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 346 PHNVE--E--WHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CccHH--H--HHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 33322 2 23344455677888888888888764321 233457899999999999999999999999876432
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCC-----------------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 003548 276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT-----------------DNGYLYLKLAECYLSLKERAHAIMFFY 338 (811)
Q Consensus 276 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 338 (811)
.+-..+|..-|..-....+++.|+.+++.+.....+ ....+|..++......|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234678999999999999999999999988754221 134578889999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhh
Q 003548 339 KALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIF 418 (811)
Q Consensus 339 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 418 (811)
+++++.--.|....+.|..+....-++++.+.|++-+.+.+-... ...| ..+......-+..-..+.|..+|+
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v----~diW---~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV----YDIW---NTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH----HHHH---HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999998889999999999999999999999999999998875321 1112 122222222334457888999999
Q ss_pred Hhhhhh
Q 003548 419 PLVCES 424 (811)
Q Consensus 419 ~~l~~~ 424 (811)
++++..
T Consensus 575 qaL~~C 580 (835)
T KOG2047|consen 575 QALDGC 580 (835)
T ss_pred HHHhcC
Confidence 988854
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=1.1e-11 Score=138.26 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 108 (811)
-.|.....+...+..+...|++++|+.+++..++..|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 34556677778888888999999999999999999999999999999999999887776655 5554444333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
++ .++.++...+...+.+..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|... +.++
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22 2333333333334444455555555555555555555555555555555555555555555555 5555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC----------------CCChHHHHHHHHH
Q 003548 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG----------------KELPLKLKVKAGI 252 (811)
Q Consensus 189 A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~la~ 252 (811)
|++++.+++.. +...+++..+..++.+.+...+.+ .......+.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 55555555443 222333444444444444331000 1111222333334
Q ss_pred HHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Q 003548 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (811)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (811)
+|...++|++++.+++.+++.++. +..+...++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 455555566666666666555553 4445555555554
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=8.4e-12 Score=115.87 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003548 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (811)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 130 (811)
..+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33666666666778888888 88888888888888888888888888888888887788888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHH
Q 003548 131 AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVID 210 (811)
Q Consensus 131 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 210 (811)
..|+++.+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+.. +..
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v~~ 206 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--VRQ 206 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--HHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888776665554 677
Q ss_pred HHHHHHHHcccHHHHHHHHHHH
Q 003548 211 LLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 211 ~l~~~~~~~g~~~~A~~~~~~a 232 (811)
+++.+....|++.+|..+..+-
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccc
Confidence 8888888888888887766543
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.46 E-value=2.7e-12 Score=124.86 Aligned_cols=319 Identities=15% Similarity=0.121 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHcc------CCCCHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL----PETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPKDSA 103 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~ 103 (811)
-..+-..|.-+++.|++...+..|+.+++...++ ..+|..||.+|+.+++|++|+++-..=+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3445567888999999999999999999987664 346888999999999999999886433322 122344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
.--+||..+.-.|.|++|+.|..+-+.+.. ....+++++|.+|...|+...-..-=+ ....+.++.
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev~---- 168 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEVT---- 168 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHHH----
Confidence 566889999999999999999888776432 235678889999988876321100000 000011111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcc--CCCChHHHHHHHH
Q 003548 178 QLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS--GKELPLKLKVKAG 251 (811)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~la 251 (811)
..++.|.++|..-+++..... .-.++-+||..|+-+|+|+.|+...+.-+.+... +......++.++|
T Consensus 169 ------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 169 ------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 112334444444433321111 1135778889999999999999888776655221 1122336778899
Q ss_pred HHHHHcCCHHHHHHHHHHhhhc-----ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCHHHHHHHH
Q 003548 252 ICYLRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLA 321 (811)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la 321 (811)
.+++-+|+++.|+++|+..+.. +....+...+.+|..|.-..++++|+.++.+-+.. .......+++.+|
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLg 322 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLG 322 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999885432 22235667889999999999999999999874433 1234677899999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 003548 322 ECYLSLKERAHAIMFFYKALDRF-----ED-NIDARLTLASLLLEEAKEEE 366 (811)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 366 (811)
..+..+|..++|+.+.++.++.. |. ...+..++..+-...|..+.
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999988887763 22 34566777777777776443
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.46 E-value=1.5e-11 Score=114.31 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=167.2
Q ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (811)
Q Consensus 83 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (811)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|......|++..|+..+.++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444777777778889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCC
Q 003548 163 QKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL 242 (811)
Q Consensus 163 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 242 (811)
....|++.++|..+|-+|.+.|++++|...|.+++++.|.++. +.+++|..+.-.|+++.|..++..+... .+.
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~a 200 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAA 200 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCC
Confidence 9999999999999999999999999999999999999999986 7899999999999999999999999877 667
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003548 243 PLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (811)
Q Consensus 243 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 271 (811)
+..+..+++.+....|++++|..+..+-+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 88889999999999999999998877643
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=2.2e-10 Score=137.73 Aligned_cols=385 Identities=12% Similarity=0.017 Sum_probs=271.1
Q ss_pred HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCCCCHHHHHHHHH
Q 003548 33 GVTKML-GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH-LSPKDSALWKQLLT 110 (811)
Q Consensus 33 ~~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~ 110 (811)
+...+. ..|..+...|++.+|+..+..+-.. +.........+......|++..+..++..+-. ....++......+.
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 333443 3455677889999888766554211 11233455567777888998887777655311 11233445567788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPK---------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTG 176 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l 176 (811)
++...|++++|...+..+....+. .......++.++...|++++|...+++++...+... .+...+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 888999999999999988764321 123455678888999999999999999998655432 345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCC----CChHHHHH
Q 003548 177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK----ELPLKLKV 248 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~ 248 (811)
|.++...|++++|...+++++........ ..++..++.++...|++++|...+++++....... +....+..
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 88999999999999999999876443221 23567789999999999999999999988643211 12234456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcc----cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC-CC-CHHHHH----
Q 003548 249 KAGICYLRLGNMEKAEILFADLQWKN----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD-NGYLYL---- 318 (811)
Q Consensus 249 ~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~---- 318 (811)
.+|.++...|++++|...+.+++... +......+..++.++...|++++|...+.++..... .. ......
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 78889999999999999999876531 222455667789999999999999999998764311 11 111111
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhH
Q 003548 319 KLAECYLSLKERAHAIMFFYKALDRFEDNI----DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNE 394 (811)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (811)
.....+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++........ .....
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~------~~~~a 731 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL------MSDLN 731 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc------hHHHH
Confidence 122445568899999999877654332222 22467899999999999999999998876433211 11234
Q ss_pred HHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 395 KIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 395 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
.++..+|.++...|+.++|...+.++++-.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 578889999999999999999999988654
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.43 E-value=2.8e-11 Score=135.04 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=176.5
Q ss_pred hhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 003548 62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (811)
Q Consensus 62 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 141 (811)
..+|.+..++..|+..+...|++++|+..++.++...|+...+++.+|.++.+.+++.++... .++...+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 347888999999999999999999999999999999999999999999999998887766555 4444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHccc
Q 003548 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221 (811)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~ 221 (811)
...++ .+++++...+...+.+..+++.+|.||-++|+.++|...|+++++.+|+++. +++++|..|... +
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-d 164 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-D 164 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-h
Confidence 33344 5556666666667888889999999999999999999999999999999986 899999999999 9
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHH-HHcCChHHHHH
Q 003548 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTL-MSLGHSNSALK 300 (811)
Q Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~ 300 (811)
.++|+.++.+++.. +...+++..+..++.+++...|. +.+.+..+-... -..|
T Consensus 165 L~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~------- 218 (906)
T PRK14720 165 KEKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHRE------- 218 (906)
T ss_pred HHHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhc-------
Confidence 99999999999876 45556777777777777666653 333322221111 1111
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003548 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (811)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (811)
.......+.-+-.+|...+++++++..++.+++.+|+|..++..++.+|.
T Consensus 219 ---------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 ---------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11122333344455555666666666666666666666666665555554
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.2e-10 Score=106.86 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHH
Q 003548 48 GNFEQAISLLKEVVRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121 (811)
Q Consensus 48 g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 121 (811)
.+.++-+++..+++.. .|+....+-....+....|+.+.|..++.+.....|++..+...-|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3444555555554433 2233334445555666778888888888887777788888877788888888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003548 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201 (811)
Q Consensus 122 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 201 (811)
+++|+..++.+|.+...+.....+...+|+..+|++.+...++.++.|.++|..++.+|...|+|++|.-++++++-..|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 88888888888888777777777777888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 003548 202 SDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKELPLKLKVKA 250 (811)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 250 (811)
.++. .+..++.+++..| ++.-|.++|.+++++ .+.+...++.+
T Consensus 186 ~n~l--~f~rlae~~Yt~gg~eN~~~arkyy~~alkl----~~~~~ral~GI 231 (289)
T KOG3060|consen 186 FNPL--YFQRLAEVLYTQGGAENLELARKYYERALKL----NPKNLRALFGI 231 (289)
T ss_pred CcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ChHhHHHHHHH
Confidence 7774 4566777776665 455677788888877 44444444433
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=6.9e-11 Score=108.42 Aligned_cols=176 Identities=20% Similarity=0.218 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHH
Q 003548 29 KLSPGVTKMLGE-ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (811)
Q Consensus 29 ~~~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 107 (811)
.+-++...++.+ ....+..|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+..
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 356677777765 4456789999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q 003548 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG--- 184 (811)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--- 184 (811)
...+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++..|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CHHHHHHHHHHHHhhCCCCC
Q 003548 185 QTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~ 204 (811)
++.-|.++|.++++++|.+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHhChHhH
Confidence 46679999999999999654
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=6.1e-10 Score=133.85 Aligned_cols=344 Identities=13% Similarity=0.071 Sum_probs=250.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-----C----HHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVR-LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-----D----SALWK 106 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~----~~~~~ 106 (811)
+...+......|++..+...+..+-. ....++......+.++...|++++|...+..+....+. . .....
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44566777788888887777655411 11234456677888889999999999999888654321 1 23345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKT 175 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~ 175 (811)
.++.++...|++++|...+++++...|... .+...+|.++...|++++|...+++++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 567888899999999999999998554332 345678889999999999999999998764321 245677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCC-CChHHHHH
Q 003548 176 GAQLFLKCGQTARSIGILEEYLKVHPS-----DA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK-ELPLKLKV 248 (811)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~ 248 (811)
++.++...|++++|...+++++..... .. ....+..++.++...|++++|...+.+++....... ......+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999998875221 11 122355788899999999999999999987643222 22345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhccccc--HHHHH----HHHHHHHHHcCChHHHHHHHHHHhhccCCCCH----HHHH
Q 003548 249 KAGICYLRLGNMEKAEILFADLQWKNAID--HADLI----TEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYL 318 (811)
Q Consensus 249 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 318 (811)
.++.++...|++++|...+.++....... ..... ......+...|+.+.|...+...... ..... ..+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHH
Confidence 78999999999999999999875432111 11111 11234455688999999998776542 21221 2256
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCccc
Q 003548 319 KLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (811)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (811)
.++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.++++.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 789999999999999999999998632 234577889999999999999999999999877654
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=4.9e-11 Score=132.64 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=90.6
Q ss_pred hhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 003548 62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (811)
Q Consensus 62 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 141 (811)
+..|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003548 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (811)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 202 (811)
+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 6666666666666666666666666666666666666666666666666666666655433
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=3.1e-11 Score=134.22 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 108 (811)
...|.+...+.. .+..-|.-++|-.-+.+-++ ++...-|.+. ...+++.-........|.+++++..|
T Consensus 25 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 25 ASGPTILDLLEA--ALAEPGESEEAGRELLQQAR------QVLERHAAVH----KPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred CCCcHHHhHHHH--HhcCcccchhHHHHHHHHHH------HHHHHhhhhc----chHhhHHHHHHHHHhccccHHHHHHH
Confidence 344555555543 34556766666443322211 1111222222 22333333344445678999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...|++..++..+|.++...|++++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcc
Q 003548 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS 238 (811)
Q Consensus 189 A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 238 (811)
|+..|++++..+|++.. ++..+|.++...|+.++|...|+++++..++
T Consensus 173 A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 173 ADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999998887775 7999999999999999999999999998553
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1.3e-11 Score=110.36 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003548 56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135 (811)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 135 (811)
.+++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.+|..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003548 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (811)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 171 (811)
+..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777766554
No 113
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.2e-11 Score=117.03 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 112 (811)
.+..+-.+|+.++..++|.+|+..|.++|.++|.++..|...+.+|.++|.++.|++.++.++.++|....+|..||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003548 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (811)
Q Consensus 113 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 153 (811)
..+|++++|+..|+++++++|++...+..|..+-...++..
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999877777766666555544
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=4.3e-11 Score=106.97 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=109.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 89 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|...+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
++..+..+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999998875
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=4.1e-11 Score=125.76 Aligned_cols=225 Identities=14% Similarity=0.113 Sum_probs=182.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHH
Q 003548 27 KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
...+||--..-...|..++..|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|+++..|.
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 3456666666666778888889899999888875 6677788888888988888888888888 677788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 186 (811)
.+|++.....-|++|.++.+.. +..+...+|......++|+++.+.++..++++|-....|+.+|.+..+.+++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8888877766666666665543 3346677777777788899999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266 (811)
Q Consensus 187 ~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 266 (811)
+.|.+.|..++...|++.. +|++++..|...++-.+|...+.++++. +..++.+|-+...+..+.|.+++|+..
T Consensus 536 q~av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999999998886 7889999999999999999999888887 566777888888888888888888888
Q ss_pred HHHhhh
Q 003548 267 FADLQW 272 (811)
Q Consensus 267 ~~~~~~ 272 (811)
+.+++.
T Consensus 610 ~~rll~ 615 (777)
T KOG1128|consen 610 YHRLLD 615 (777)
T ss_pred HHHHHH
Confidence 888654
No 116
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.34 E-value=1.2e-11 Score=120.37 Aligned_cols=288 Identities=14% Similarity=0.142 Sum_probs=177.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHH
Q 003548 75 GLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHLAS 144 (811)
Q Consensus 75 a~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 144 (811)
|.-+++.|+....+.+|+.|++...++. .+|..||..|...++|++|+++...=+.+ .-......-++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 5566666777777777777776655442 34556666666666666666654322221 1122233445666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~ 218 (811)
.+...|.|++|+.+..+-+.+... ...+++++|.+|...|+.-.. ..|.+.. .... .-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g--~f~~-----ev 167 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKG--AFNA-----EV 167 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcc--cccH-----HH
Confidence 666666666666655554443211 234555555555555532110 0111000 0000 00
Q ss_pred cccHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc---c--ccHHHHHHHHHHHHHH
Q 003548 219 NNAYEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---A--IDHADLITEVADTLMS 291 (811)
Q Consensus 219 ~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~--~~~~~~~~~la~~~~~ 291 (811)
...++.|.++|..-++.... +......++-++|..|+-+|++++|+..-+.-+... . ...-.++.++|.++.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 11244555566555544211 011223566778888999999999998877633221 1 1234578899999999
Q ss_pred cCChHHHHHHHHHHhhc----c-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHH
Q 003548 292 LGHSNSALKYYHFLETN----A-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLLLE 360 (811)
Q Consensus 292 ~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~ 360 (811)
.|+++.|+++|+..+.. . ....+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999975433 1 233667889999999999999999999999877643 346788999999999
Q ss_pred cCCHHHHHhhcCCCCCCC
Q 003548 361 EAKEEEAITLLSPPKDLD 378 (811)
Q Consensus 361 ~g~~~~A~~~~~~a~~~~ 378 (811)
.|..++|+.+.+..+.+.
T Consensus 328 lg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999888766543
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=7.6e-10 Score=111.74 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 65 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788889999999999999999999999888889999988899999999999999999999999999988888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHH
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~ 224 (811)
.+.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.. ..++.+...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-------------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-------------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-------------------HHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999988887766543 55666777888888
Q ss_pred HHHHHHHHHHHhc
Q 003548 225 TLQHIEHAQIVRF 237 (811)
Q Consensus 225 A~~~~~~a~~~~~ 237 (811)
|+..+..+.+...
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887743
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=9.3e-11 Score=101.86 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 65 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
++..+..+.+|..++..|++++|...|+.+..++|.+...|++||.++..+|++.+|+.+|.+++.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 003548 145 FYVEIGDYEKAAESYEQIQKLF 166 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~ 166 (811)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555555554
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=2.4e-09 Score=112.80 Aligned_cols=294 Identities=18% Similarity=0.148 Sum_probs=228.5
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 65 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
|........++..+...|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 44556778899999999999999999987 46688899999999999999999999998 6778888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHH
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~ 224 (811)
+.....-|++|.++.+.. +..+...+|......++++++.++++..++++|-... .|+.+|.+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHH
Confidence 888777777777777654 3446677788888899999999999999999999886 89999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003548 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304 (811)
Q Consensus 225 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (811)
|.+.|..++.. .|.....|.+++.+|.+.++-.+|...+.++++-+. .+..+|.+...+..+.|.+++|++.+.+
T Consensus 538 av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 538 AVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999 899999999999999999999999999999998774 6888999999999999999999999998
Q ss_pred Hhhcc-CCCCHHHHHHHHHHHHHh-----ccHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHH-----HcCCHHHHH
Q 003548 305 LETNA-GTDNGYLYLKLAECYLSL-----KERAHAIM-----FFYKALDRFEDNIDARLTLASLLL-----EEAKEEEAI 368 (811)
Q Consensus 305 ~~~~~-~~~~~~~~~~la~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~ 368 (811)
+.... ...++.+...+....... ++-..+.. .+-+.+..--+.+..|...|..+. +.+..++|.
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~ 692 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAY 692 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHH
Confidence 87552 122444444433332221 22222222 233333333446666666665331 234456666
Q ss_pred hhcCCCCCCCcc
Q 003548 369 TLLSPPKDLDSL 380 (811)
Q Consensus 369 ~~~~~a~~~~~~ 380 (811)
+..++.......
T Consensus 693 ~~l~k~~~~~s~ 704 (777)
T KOG1128|consen 693 RALSKAYKCDTG 704 (777)
T ss_pred hhhhhCcccccc
Confidence 666655554443
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.28 E-value=1.7e-10 Score=100.17 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=101.6
Q ss_pred HHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 94 AAHLS-PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 94 a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
...+. ++.-+..+.+|..+...|++++|...|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34556 67778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH
Q 003548 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206 (811)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 206 (811)
+..+|.+++..|+.+.|.+.|+.++......+..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999999999999999887555543
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=2.5e-10 Score=114.18 Aligned_cols=255 Identities=18% Similarity=0.238 Sum_probs=124.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 119 (811)
...+|-.|+|..++..++ ....+|. ..+....+.+++..+|+++..+.-... ..+....+...++..+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 455667777777776665 2222332 344556667777777776655544322 11223344455555554444455
Q ss_pred HHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 120 QAMYYIRQAIRAE-P-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (811)
Q Consensus 120 ~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 197 (811)
.++..++..+... + .++......|.++...|++++|++.+.+. .+.+.......+++..++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555444433222 1 23334445555666666666666666543 445555556666666666666666666665
Q ss_pred hhCCCCCCHHHHHHHHH--HHHHcc--cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 003548 198 KVHPSDADLSVIDLLVA--ILMENN--AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (811)
Q Consensus 198 ~~~p~~~~~~~~~~l~~--~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 273 (811)
+.+.+. +...++. +.+..| .+.+|..+|++.... .+..+.++..++.+++.+|++++|...+.+++..
T Consensus 159 ~~~eD~----~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 159 QIDEDS----ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp CCSCCH----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred hcCCcH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 544332 2333333 222233 355555555554433 2334444555555555555555555555555555
Q ss_pred ccccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhccCCCCH
Q 003548 274 NAIDHADLITEVADTLMSLGHS-NSALKYYHFLETNAGTDNG 314 (811)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 314 (811)
+| .+++++.+++.+....|+. +.+.+++.++... .|.++
T Consensus 231 ~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-~p~h~ 270 (290)
T PF04733_consen 231 DP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-NPNHP 270 (290)
T ss_dssp -C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-TTTSH
T ss_pred cc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-CCCCh
Confidence 44 2555555555555555554 3333344444332 44433
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=109.25 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=53.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 152 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 152 (811)
.-|.-+.+.++|.+|+..|.+|+.++|+++..|.+.|.+|.++|.++.|++-++.++.++|....+|..+|.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 33444444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003548 153 EKAAESYEQIQKLFPDNVDATKTGAQL 179 (811)
Q Consensus 153 ~~A~~~~~~~l~~~p~~~~~~~~la~~ 179 (811)
++|++.|++++.++|++...+..|..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 555555555555555544444444333
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=1.9e-10 Score=115.02 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=190.0
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 76 LAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154 (811)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 154 (811)
.-++..|+|..++.-+. ....+|. .......+.+++..+|+++..+.-... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 34566899999997776 3333332 345567889999999998876654433 223345566777777766667777
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003548 155 AAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 155 A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 232 (811)
++..++..+.... .++.+....|.++...|++++|++.+.+. . ..........++...++++.|.+.++.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~--~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----G--SLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T--CHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C--cccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766554322 24556667778888899999999887653 2 2346667889999999999999999988
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 003548 233 QIVRFSGKELPLKLKVKAGICYLRLG--NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310 (811)
Q Consensus 233 ~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 310 (811)
.+. .+...-+....+.+.+..| .+.+|...|+++....+ ..+.++..++.+.+..|++++|...+.+++.. .
T Consensus 158 ~~~----~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~-~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~ 231 (290)
T PF04733_consen 158 QQI----DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG-STPKLLNGLAVCHLQLGHYEEAEELLEEALEK-D 231 (290)
T ss_dssp HCC----SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hhc----CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-c
Confidence 765 5556655566666666666 58999999999877765 47888999999999999999999999999976 8
Q ss_pred CCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhcCCCHHH
Q 003548 311 TDNGYLYLKLAECYLSLKER-AHAIMFFYKALDRFEDNIDA 350 (811)
Q Consensus 311 ~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 350 (811)
|.++.++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999998 66778888888889998744
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=8.2e-09 Score=104.43 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003548 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (811)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 178 (811)
|....+++..+..++..|+++.|+..++..+...|+|+..+...+.++...++..+|.+.+++++..+|+.+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcC
Q 003548 179 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (811)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 258 (811)
.+++.|++.+|+..++..+..+|+++. .|..|+..|..+|+..++...+.+. +...|
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~A~AE~---------------------~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLARAEG---------------------YALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHHHHHHH---------------------HHhCC
Confidence 888888888888888888888888886 5888888888888877766554333 44467
Q ss_pred CHHHHHHHHHHhhhcc
Q 003548 259 NMEKAEILFADLQWKN 274 (811)
Q Consensus 259 ~~~~A~~~~~~~~~~~ 274 (811)
++++|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 7777777777765443
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=4.1e-10 Score=117.22 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 115 (811)
.+..+|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 003548 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 149 (811)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888887776666654443
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.15 E-value=9.5e-09 Score=100.32 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCChHHHHHHHHHHHccCCCCH---HHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET---YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 106 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 106 (811)
....++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45557788888888888888888888888888876554 37788888888888888888888888877654 4566
Q ss_pred HHHHHHHhcC---------------C---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 107 QLLTFAVQKG---------------D---TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 107 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
.+|.++...+ + ..+|+..|++.++..|++.-+ .+|...+..+.. .
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---R 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---H
Confidence 7776653332 1 245667777777777765421 111111111100 0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003548 169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a 232 (811)
-..--...|..|.+.|.+..|+.-++.+++..|+.+. ..++..++..|...|..++|..+....
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0112235677777788888888888888877777654 245677778888888887777765543
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=7.8e-09 Score=98.66 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH---HHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 106 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 106 (811)
....++..|..++..|+|.+|+..|++++...|. .+.+.+.+|.+++..|++++|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4567899999999999999999999999998876 456889999999999999999999999999988765 5677
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003548 107 QLLTFAVQKG-----------DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (811)
Q Consensus 107 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 175 (811)
.+|.++.... ...+|+..|+..+...|++..+- +|...+..+-.. -..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH---HHHHHHH
Confidence 7777765442 23466777777777777654321 111100000000 0111233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcccHH
Q 003548 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYE 223 (811)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~l~~~~~~~g~~~ 223 (811)
+|..|.+.|.+..|+..++.+++..|+.... .++..++..+...|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4556666666666666666666665554331 24555566666666555
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.8e-09 Score=101.33 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003548 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESY 159 (811)
Q Consensus 83 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 159 (811)
..+.-+.-++.-+..+|+|...|..||.+|+..|++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35555666677777888888888888888888888888888888888888888888888887776544 356788888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH
Q 003548 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206 (811)
Q Consensus 160 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 206 (811)
++++..+|.++.+...+|..++..|++.+|...++.+++..|.+..+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 88888888888888888888888888888888888888887776653
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=3.8e-08 Score=96.09 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=133.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHH
Q 003548 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRI 140 (811)
Q Consensus 67 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 140 (811)
.+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++...+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56677788888888888888888888888888877654 3778888888888888888888888887766 45677
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 141 HLASFYVEIG---------------D---YEKAAESYEQIQKLFPDNVD---ATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 141 ~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
.+|.++...+ + ..+|+..|++.++..|++.- +...+..+ +..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l--------------~~~la- 175 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL--------------KDRLA- 175 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------------HHHHH-
Confidence 7776654433 1 24677777888888877632 11111111 11111
Q ss_pred CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003548 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (811)
Q Consensus 200 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 271 (811)
.--...|..|.+.|.|..|+.-++.+++.+|.. +...+++..++..|..+|..++|......+.
T Consensus 176 -------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 -------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-QATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 123478999999999999999999999996643 5577899999999999999999998877653
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=2.9e-09 Score=110.90 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 150 (811)
+...|..++..|++++|+.+|.+++.++|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 183 (811)
++++|+..|++++.++|+++.+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777666665554333
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3.3e-07 Score=97.58 Aligned_cols=345 Identities=15% Similarity=0.099 Sum_probs=194.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHH--------HHcc---CCCCHHHHHHHHH
Q 003548 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVI--------AAHL---SPKDSALWKQLLT 110 (811)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------a~~~---~p~~~~~~~~la~ 110 (811)
..|...|+.+.|.+..+-+ ....+|-+++....+..+.+-|.-++-. |+.. +|+ +.-...|.
T Consensus 736 SfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHH
Confidence 3455679999998877655 2346888888888887777776665522 2221 233 33345677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (811)
+..++|..++|...|.+.-.. -.+-.+|...|.+++|.++-+.--++ .--..+++.|..+...++.+.|+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHH
Confidence 778899999999999987553 34556788888888888776543222 12356778888888888888888
Q ss_pred HHHHHH----------HhhCCCC--------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 003548 191 GILEEY----------LKVHPSD--------ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI 252 (811)
Q Consensus 191 ~~~~~~----------l~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 252 (811)
++|+++ +..+|.. .+...|...|..+...|+.+.|+.+|..+...+ .+..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f------------s~Vr 946 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF------------SMVR 946 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh------------hhee
Confidence 888874 2233321 112356677888888899999998888876542 2233
Q ss_pred HHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------cCCC-------------C
Q 003548 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN------AGTD-------------N 313 (811)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~-------------~ 313 (811)
+.+-+|+.++|-.+-++. .+..+.+.+|+.|...|+..+|+.+|.++... ...+ .
T Consensus 947 I~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred eEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 333344444444433331 13333444444444444444444444432211 0000 0
Q ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHH------------------H-----HhcC-CCHHHHHHHHHHHHHcCCHHHHH
Q 003548 314 GYLYLKLAECYLSLK-ERAHAIMFFYKA------------------L-----DRFE-DNIDARLTLASLLLEEAKEEEAI 368 (811)
Q Consensus 314 ~~~~~~la~~~~~~g-~~~~A~~~~~~a------------------l-----~~~p-~~~~~~~~la~~~~~~g~~~~A~ 368 (811)
+.-....|..|...| +...|...|.++ + .++| .++.....-+..+....++++|.
T Consensus 1021 ~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 011112223333333 333333333321 1 1233 24555556666666666666666
Q ss_pred hhcCC------CCCCCcccCC-------------CCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhh
Q 003548 369 TLLSP------PKDLDSLDMN-------------SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (811)
Q Consensus 369 ~~~~~------a~~~~~~~~~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 421 (811)
.++-. ++.+...... .+...+.-....++..+|.+..++|.|..|..-|.++=
T Consensus 1101 ~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1101 NLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 55432 1111111000 00011112245688999999999999999987776643
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.6e-08 Score=97.00 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 003548 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGILE 194 (811)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 194 (811)
.+.-+.-++.-+..+|+|.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566677778888899999999999999999999999999999999999999999999998877654 3567888999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003548 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (811)
Q Consensus 195 ~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 253 (811)
+++..+|.+.. +...|+..++..|+|.+|+..++.++...+.+.+....+.-.+...
T Consensus 218 ~al~~D~~~ir--al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 218 QALALDPANIR--ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHhcCCccHH--HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 99999998886 7888999999999999999999999988765555544444444433
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=6.8e-09 Score=90.40 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLL 109 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la 109 (811)
.++..|..++..|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|+.++..+|++ +.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566666666666666666666666666554 3456666666666666666666666666655553 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISL 138 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 138 (811)
.++...|++++|+.++.++++..|++..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 66666666666666666666666655443
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=3.3e-08 Score=94.37 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHH
Q 003548 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI 140 (811)
Q Consensus 67 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 140 (811)
.+..++..|..++..|++.+|+..|+++....|.. +.+.+.+|.++...|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45667777777778888888888887777776654 45677777777777778888777777777777653 4566
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 003548 141 HLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (811)
Q Consensus 141 ~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 209 (811)
.+|.++.... ...+|+..|+..+...|+++-+-...-. +..+...+. .--
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~-----------l~~l~~~la--------~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR-----------LAELRNRLA--------EHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH-----------HHHHHHHHH--------HHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH-----------HHHHHHHHH--------HHH
Confidence 6666654432 2335666666666666665322110000 001111111 123
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 003548 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 265 (811)
Q Consensus 210 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 265 (811)
..+|..|.+.|.+..|+..++.+++.+|.. +....++..++.++.++|..+.|..
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhCChHHHHH
Confidence 478999999999999999999999996633 3445799999999999999986543
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.00 E-value=2.3e-08 Score=89.95 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQ 107 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~ 107 (811)
....+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4456666666677888888888888888887776 4567777888888888888888888887766544 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (811)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 163 (811)
++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888888888888887755 23334445667777888888888888887777653
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.99 E-value=0.00013 Score=79.86 Aligned_cols=230 Identities=19% Similarity=0.144 Sum_probs=159.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHH
Q 003548 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121 (811)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 121 (811)
.-....+++..|...+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567889999999999999999999999999999999999999999888887777888888899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------HHHH
Q 003548 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTA---------RSIG 191 (811)
Q Consensus 122 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~ 191 (811)
..+|++++..+|. .+.+..+-.+|.+.+.|.+-.+.--++.+..|.++-.......+.++ ....+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999998 88888899999999999887777777777888887554444444333 22222 2333
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003548 192 ILEEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (811)
Q Consensus 192 ~~~~~l~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 270 (811)
.+++.++.. +-.... -....-.++..+|++++|..++..-+...- .+.+..........+...+++.+-.++..++
T Consensus 176 m~~~~l~~~gk~~s~a-E~~Lyl~iL~~~~k~~eal~~l~~~la~~l--~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEA-EIILYLLILELQGKYQEALEFLAITLAEKL--TSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHhccCCccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444444443 111111 122233444556666666666632221100 2223333334444555555555555555555
Q ss_pred hhccc
Q 003548 271 QWKNA 275 (811)
Q Consensus 271 ~~~~~ 275 (811)
+..++
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 55444
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.98 E-value=3e-07 Score=88.97 Aligned_cols=237 Identities=16% Similarity=0.094 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----HH
Q 003548 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LS 207 (811)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~ 207 (811)
+++.+++..+....++.+++.+-+..+......+ .+...++..+..++.++++++.|+.+++....+.+ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 4566666666666667777766666655432222 45556777777777888888888887775433322 24
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-----ccc
Q 003548 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL------PLKLKVKAGICYLRLGNMEKAEILFADLQWK-----NAI 276 (811)
Q Consensus 208 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~ 276 (811)
++..||.++....|+++|.-+..++.++...-.-. ...+.+.++..+..+|....|.++.+++.+. +..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 56778888888888888888888877763321111 2245667778888888888888888775432 222
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHhccHHH-----HHHHHHHHHHhcCC
Q 003548 277 DHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECYLSLKERAH-----AIMFFYKALDRFED 346 (811)
Q Consensus 277 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~ 346 (811)
-.......+|++|...|+.+.|..-|+.+.... .-....++...|.|+....-..+ |+++-++++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 355667788999999999998888888765431 12245566777777776655555 88888888776542
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHhhcCC
Q 003548 347 ------NIDARLTLASLLLEEAKEEEAITLLSP 373 (811)
Q Consensus 347 ------~~~~~~~la~~~~~~g~~~~A~~~~~~ 373 (811)
-...+..++.+|..+|.-++-...+..
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 245667789999888876665555543
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.98 E-value=6.2e-08 Score=97.97 Aligned_cols=203 Identities=15% Similarity=0.199 Sum_probs=107.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 75 GLAHSALGNHKSAFDFYVIAAHLSP--KD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 75 a~~~~~~g~~~~A~~~~~~a~~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
|.+|...|++++|..+|.++....- ++ ...+...+.++... ++++|+.+|++++. +|..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~~ 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------IYRE 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHHh
Confidence 6666667777777777766644321 11 11223333333332 55555555555443 2233
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcccHH
Q 003548 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC-GQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYE 223 (811)
Q Consensus 149 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~----~~~~~~l~~~~~~~g~~~ 223 (811)
.|++..|. ..+..+|.+|... |++++|+++|+++.+....... ..++..++.++...|+|+
T Consensus 107 ~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 107 AGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp CT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred cCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 33333332 3344556666666 7777777777777765322221 124566777788888888
Q ss_pred HHHHHHHHHHHHhccCCCCh--H-HHHHHHHHHHHHcCCHHHHHHHHHHhhhccc----ccHHHHHHHHHHHHHH--cCC
Q 003548 224 KTLQHIEHAQIVRFSGKELP--L-KLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADLITEVADTLMS--LGH 294 (811)
Q Consensus 224 ~A~~~~~~a~~~~~~~~~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~--~g~ 294 (811)
+|+..|+++........-.. . ..++..+.|++..|++..|...+++....+| +....+...+..++-. ...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 88888877766421111111 1 3455667778888888888888887765544 2233444455554432 345
Q ss_pred hHHHHHHHHHHh
Q 003548 295 SNSALKYYHFLE 306 (811)
Q Consensus 295 ~~~A~~~~~~~~ 306 (811)
+.+|+.-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 666666665444
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=2.8e-08 Score=107.59 Aligned_cols=143 Identities=9% Similarity=-0.039 Sum_probs=86.5
Q ss_pred hhCCCChHHH--HHHHHHHHHcCC---hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 003548 62 RLSPNLPETY--NTLGLAHSALGN---HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK--------GDTAQAMYYIRQA 128 (811)
Q Consensus 62 ~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 128 (811)
...|.++.+| +..|..+...++ ...|+.+|+++++++|++..++..++.++... .+...+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3344444433 333444443333 44556666666666666655555555544332 1234455555555
Q ss_pred HHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 129 IRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 129 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
+.. +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 543 555666677777777777777777777777777777 4667777777777777777777777777777777764
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.5e-08 Score=88.27 Aligned_cols=104 Identities=23% Similarity=0.239 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL 142 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 142 (811)
+.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+.+|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456666777777777777777777776666654 3556666777777777777777777666666553 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
|.++...|++++|+..+++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666666665543
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=4.9e-05 Score=82.96 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=145.2
Q ss_pred HcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159 (811)
Q Consensus 80 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 159 (811)
..+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677777777777777777777777777777777777777777766666666666667777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC
Q 003548 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG 239 (811)
Q Consensus 160 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 239 (811)
++++..+|. .+....+-.+|.+.+.|.+-.+.--++.+..|.++-. .|..+..+.......+....
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-fWsV~Slilqs~~~~~~~~~------------ 166 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-FWSVISLILQSIFSENELLD------------ 166 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHhccCCccccc------------
Confidence 777777777 6666666666777766665555555555566666531 33333333322222222211
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc-cccHHHHHHHHHHHHHHcCChHHHHHHHHH-HhhccCCCCHHHH
Q 003548 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-AIDHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLY 317 (811)
Q Consensus 240 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~ 317 (811)
.+.. .-|...+++.+... +-+...-....-.++...|++++|++++.. ..+...+.+...-
T Consensus 167 -----~i~l------------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 167 -----PILL------------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred -----chhH------------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 0111 11333444444333 211212222233455677888888888843 3323244455555
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 318 LKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 318 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
......+...+++.+-.+...+++..++++
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 566777778888888888888888888877
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=3e-08 Score=92.01 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=83.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCH
Q 003548 44 QYAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDT 118 (811)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~ 118 (811)
++..++|..+...+..+++.++.. ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 444555677777776666665554 5677888888888899999999999988776653 45788888888888999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 150 (811)
++|+.++++++.++|.....+..+|.++...|
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999988888888888888888887443
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.5e-07 Score=83.93 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=162.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003548 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (811)
++-.|+|.+++....+.-.. +........+.+.|..+|++...+......- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 44456666666655554332 2556666677777777777655443332221 1223444555555555555555554
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003548 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (811)
Q Consensus 192 ~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 271 (811)
-+.+.+..............-+.++...|++++|.+...... ..++...-..++.+..+.+-|...++++.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332222222244556777888888888887776532 23444445566777788888888888876
Q ss_pred hcccccHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 272 WKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 272 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
..+ +..++..+|.++.. .+++.+|.-+|+.+-+. .+..+......+.|+..+|++++|...++.++..++++
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 553 33445555555543 34688899999888865 67788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-hhcCCCCCCCccc
Q 003548 348 IDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLD 381 (811)
Q Consensus 348 ~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~ 381 (811)
++++.++..+-...|...++. +.+.+.....|..
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 999999988888888765544 4445555555543
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=1.1e-07 Score=97.04 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHccCCC
Q 003548 36 KMLGEASLQYAYGN---FEQAISLLKEVV---RLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPK 100 (811)
Q Consensus 36 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~ 100 (811)
.++.+|...+..+. .+.|+.+|.+++ ..+|+.+.+|..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 34444444443332 334555566666 55555566666665555432 1223444555555555555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003548 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (811)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 169 (811)
|+.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|.-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 555555555555555555555555555555555555555555555555555555555555555555543
No 145
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=1.6e-09 Score=103.43 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 003548 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 117 (811)
-.+|+.||.+|.|++|+.+|.+.+..+|.++..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34677788888888888888888888888888888888888888888888888888888777777777777777777888
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 118 TAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
..+|..-++.++.+.|++.+..-.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 888888888888888876655444443
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=8.8e-08 Score=85.92 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003548 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (811)
Q Consensus 67 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 146 (811)
.+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34566777777888888888888888888888888888888888888888888888888888888888887888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (811)
.--|++.-|.+-+.+..+.+|++|---..+-.. ...-++.+|...+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL 189 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNL 189 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHH
Confidence 888888888888888888888776322222111 1233555665443
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=2.1e-07 Score=83.51 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
..++..|..|-..|-+.-|..-|.+++.+.|+-++++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+..
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 44666778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHH
Q 003548 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 262 (811)
Q Consensus 183 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 262 (811)
-|++.-|.+.+.+..+.+|++|--..|..+. ...-++.+|...+.+-.+. ......-+...+ ..+|+..+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~---~yLgkiS~ 215 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVE---FYLGKISE 215 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHH---HHHhhccH
Confidence 9999999999999999999998533333322 3344677777665443332 111111111111 11222211
Q ss_pred HHHHHHHhhhccc------ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 263 AEILFADLQWKNA------IDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 263 A~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
...++++..... ..-.++++.+|..+...|+.++|..+|+-++..
T Consensus 216 -e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 216 -ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 112222211111 113456777777777888888887777766644
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=7.2e-09 Score=79.71 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 003548 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEP 133 (811)
Q Consensus 68 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 133 (811)
+..|..+|.+++..|++++|+..|.+++..+|+++.+|..+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444444444444444444444444444444444444444444444444 34444444444444443
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.88 E-value=2.3e-08 Score=83.02 Aligned_cols=92 Identities=25% Similarity=0.420 Sum_probs=37.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 152 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 152 (811)
.+|.++...|++++|+..+.+++...|.+..++..+|.++...|++++|+.++++++...|.+..++..++.++...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444444444444444444444444433333444444444444444444444444444443333444444444444444
Q ss_pred HHHHHHHHHHHH
Q 003548 153 EKAAESYEQIQK 164 (811)
Q Consensus 153 ~~A~~~~~~~l~ 164 (811)
++|...+.++++
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 444444444333
No 150
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.88 E-value=7.2e-07 Score=86.41 Aligned_cols=309 Identities=16% Similarity=0.141 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHcCChHHHHHHHHHHHcc----CCC--CHHHH
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHL----SPK--DSALW 105 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~--~~~~~ 105 (811)
...+..|..++...++++|+..+.+.+..-.+... .+-.+..+...+|.+++++.+--..+.. ... ...++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999886544332 3444566778888888877665443332 211 13568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 003548 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATK 174 (811)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 174 (811)
.+++..+....++.+++.+-+..+...... ..+...++..+..++.++++++.|+.+++...++ -.++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 889999999999999998888777653222 3567779999999999999999999999875443 25788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--CH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhc--cCCCChH
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDA--DL------SVIDLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPL 244 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~ 244 (811)
.++.++....++++|+-+..++.++..... +| .+++.++..+..+|....|.++.+++.++.- .+.+...
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999999887643221 11 2466788889999999999999999877632 2234445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHHHHcCChH-----HHHHHHHHHhhccCC---
Q 003548 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSN-----SALKYYHFLETNAGT--- 311 (811)
Q Consensus 245 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~--- 311 (811)
.....+|.+|...|+.+.|..-|+.+...... ....++...+.++....-.. .|+++-+++++....
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 66778899999999999999999987543211 13344555566554443333 377777776655221
Q ss_pred --CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 003548 312 --DNGYLYLKLAECYLSLKERAHAIMFFYKALDR 343 (811)
Q Consensus 312 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (811)
........++.+|..+|.-++-...+.++-+.
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 13346678899998888887777777665443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.87 E-value=8.7e-08 Score=89.17 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=91.7
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003548 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (811)
Q Consensus 66 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 142 (811)
..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++.+++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003548 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (811)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 203 (811)
|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888887666655554432 2566777777777777765
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=3e-07 Score=94.06 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=140.6
Q ss_pred HHhhCCCCh---HHH----HHHHHHHHHcCC---hHHHHHHHHHHH---ccCCCCHHHHHHHHHHHHhc---------CC
Q 003548 60 VVRLSPNLP---ETY----NTLGLAHSALGN---HKSAFDFYVIAA---HLSPKDSALWKQLLTFAVQK---------GD 117 (811)
Q Consensus 60 ~l~~~p~~~---~~~----~~la~~~~~~g~---~~~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~---------g~ 117 (811)
+....|.+. ++| +..|......+. .+.|+.+|.+++ .++|....++..++.|+... .+
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344446555 555 677777766654 457899999999 99999999999999998654 23
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (811)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 197 (811)
..+|....+++++++|.|+.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.+++++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003548 198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 198 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 232 (811)
+++|......+.......|. ....++|+..|-+-
T Consensus 400 rLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred ccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 99998776433333333444 34567777776543
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=6.1e-05 Score=80.93 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=149.9
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH---cCCCCHHHHHHHHHHH
Q 003548 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ--------AIR---AEPKDISLRIHLASFY 146 (811)
Q Consensus 78 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~ 146 (811)
|...|+.+.|....+-. ....+|-++|..+.+..+++-|.-|+-. ++. .+|+ +.-...|.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 44578889887766443 3457899999999998888888776642 222 2333 3334567778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHH
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 226 (811)
.++|-.++|..+|.+.-+. -.+-.+|...|.+++|.++-+.--.+.-. ..+++.+.-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHH
Confidence 8999999999999998553 35667888999999999877653222222 25889999999999999999
Q ss_pred HHHHHHHH----------Hhcc------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Q 003548 227 QHIEHAQI----------VRFS------GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (811)
Q Consensus 227 ~~~~~a~~----------~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (811)
++|+++-. .+|+ ....+..++..-|..+...|+.+.|+.+|..+. -|+.+..+..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEe
Confidence 99998521 1000 001112334444555555666666666665541 2444555555
Q ss_pred HcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003548 291 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 341 (811)
-+|+.++|-.+-+ ...+..+.+.+|+.|...|++.+|+.+|.++-
T Consensus 950 ~qGk~~kAa~iA~------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAE------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHH------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666666654432 33455666777777777777777777777654
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=8e-09 Score=78.27 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH
Q 003548 39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102 (811)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 102 (811)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566677777777777777777777777777777777777777777777777777777766653
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=98.87 E-value=4.6e-08 Score=85.57 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
....+..|..++..|++++|..+|+-....+|.+++.|..||.|+..++++++|+..|..+..++++++...+..|.|++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003548 114 QKGDTAQAMYYIRQAIR 130 (811)
Q Consensus 114 ~~g~~~~A~~~~~~al~ 130 (811)
..|+.+.|..+|..++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555544
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=3.1e-08 Score=82.25 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 115 (811)
.++..|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+.+++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 003548 116 GDTAQAMYYIRQAIRAEPK 134 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~ 134 (811)
|++++|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.85 E-value=2.2e-07 Score=100.85 Aligned_cols=144 Identities=20% Similarity=0.168 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 003548 27 KNKLSPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--------NHKSAFDFYVIAA 95 (811)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a~ 95 (811)
..+.++++..++-+|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777778888887776655 778888888888888888888888877775532 2345555556655
Q ss_pred cc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003548 96 HL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (811)
Q Consensus 96 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 171 (811)
.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 53 666777788888888888888888888888888888 4778888888888888888888888888888888775
No 158
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=1.8e-06 Score=97.65 Aligned_cols=218 Identities=15% Similarity=0.180 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKD----ISLRIHLASFYVEIGDYEKAAESY 159 (811)
Q Consensus 85 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 159 (811)
.+..+-|++.+.-+|+....|........+.++.++|....++|+. +++.. ...|..+-.+...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3455667777788888888888888888888888888888888886 34432 345555555566667777777888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC
Q 003548 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG 239 (811)
Q Consensus 160 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 239 (811)
+++.+.. +...++..|..+|...+.+++|.++++.+++....... +|..++..++.+.+-+.|...+.+|+...|
T Consensus 1521 eRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-- 1595 (1710)
T KOG1070|consen 1521 ERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSLP-- 1595 (1710)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhcc--
Confidence 8887764 33567778888888888888888888888887774443 788888888888888888888888888754
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 240 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
...........+.+.++.|+.+.+..+|+..+...|. ..++|.-+.+.-.+.|+.+.+..+|++++..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 2446777778888888888888888888888888874 7888888888888888888888888888765
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=98.84 E-value=5.6e-08 Score=85.04 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=98.1
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH
Q 003548 60 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 139 (811)
Q Consensus 60 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 139 (811)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.++..+++|++|+.+|..+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33445566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003548 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (811)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 170 (811)
+..|.++..+|+...|...|..++. .|.+.
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999988 45443
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.4e-06 Score=81.24 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=155.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
.+.+|-.|+|..++..-.+.-... ...+....+...|..+|++..-+.-...+- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 456777888888887766654433 566777778888888888765544433221 1223444555555555555555
Q ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 121 AMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (811)
Q Consensus 121 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 198 (811)
-+.-+...+.... .+......-|.++...|++++|+...... .+.++...-..++.+..+++-|.+.++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5554444433222 22234445567777788888887777653 3445555556677777777888887777777
Q ss_pred hCCCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc
Q 003548 199 VHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274 (811)
Q Consensus 199 ~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 274 (811)
.+.+. ++..|+..+.. .+.+.+|.-+|+..-+. .+..+.+....+.|++.+|++++|...++.++..+
T Consensus 166 ided~----tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDA----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHH----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 65442 35555555543 24566666666666654 45556666667777777777777777777777666
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCH
Q 003548 275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG 314 (811)
Q Consensus 275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 314 (811)
+. +++.+.++..+-...|...++..-+-.-+...+|..+
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 63 6666666666666666666555444332223345444
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=1.9e-07 Score=84.03 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHH
Q 003548 81 LGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEK 154 (811)
Q Consensus 81 ~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 154 (811)
.++...+...++..+..+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444444444444444444 2334444445555555555555555544443322 2234444444445555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 155 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44444331 112222334444444444444444444444443
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.83 E-value=7.7e-06 Score=80.37 Aligned_cols=292 Identities=16% Similarity=0.090 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH-HHHHHHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFA 112 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~ 112 (811)
.-+..|.+....|+-..|.++-.+.-..-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|..- -.+..|-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 35667888888999999999888876543333 34555667777888999999999988775 33321 1122333334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HH--HHHHHHHHHHcC
Q 003548 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL---FPDNV---DA--TKTGAQLFLKCG 184 (811)
Q Consensus 113 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~---~~--~~~la~~~~~~g 184 (811)
...|..+.|..+-+++....|.-+.++...-...+..|+++.|+++.+..... .++-. .+ +...+.... ..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-da 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cC
Confidence 56799999999999999999999988888888889999999999988876543 22221 12 222222222 34
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHH
Q 003548 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 264 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 264 (811)
+...|...-..+.++.|+... .-..-+..++..|+..++-.+++.+.+. .|.+. ++.+|....--+.++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta~ 312 (531)
T COG3898 244 DPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTAL 312 (531)
T ss_pred ChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcHH
Confidence 577888888899999998875 4567788999999999999999999887 44432 233344333333444
Q ss_pred HHHHH---hhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q 003548 265 ILFAD---LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-KERAHAIMFFYKA 340 (811)
Q Consensus 265 ~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 340 (811)
.-+++ +....| ++.+....++..-+..|++..|..--+.+... . ....++..++++-... |+-.++...+-++
T Consensus 313 dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~-pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAARE-A-PRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhh-C-chhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44444 223333 58888999999999999999999888877754 3 3456777788887765 9999999999999
Q ss_pred HHh
Q 003548 341 LDR 343 (811)
Q Consensus 341 l~~ 343 (811)
+..
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 864
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=4.1e-07 Score=92.03 Aligned_cols=202 Identities=15% Similarity=0.075 Sum_probs=120.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCC--ChHHHHHHH
Q 003548 177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKA 250 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~l 250 (811)
|..|...|++++|...|.++....-.... ...+...+.++... ++++|+.++++++..+..... ....++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444445555555555444332211000 11233444444333 666677777666665432222 223456667
Q ss_pred HHHHHHc-CCHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC--CC----CHHHHH
Q 003548 251 GICYLRL-GNMEKAEILFADLQWKN-----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TD----NGYLYL 318 (811)
Q Consensus 251 a~~~~~~-g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~ 318 (811)
|.+|... |++++|+.+|+++.... +.....++..+|.++...|+|++|++.|+++..... +. -...++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 7777777 78888888888765432 222456778889999999999999999998775421 11 123567
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH--cCCHHHHHhhcCCCCCCCc
Q 003548 319 KLAECYLSLKERAHAIMFFYKALDRFEDN-----IDARLTLASLLLE--EAKEEEAITLLSPPKDLDS 379 (811)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~ 379 (811)
..+.|+...||+..|...+++....+|.. ......|...+.. ...+++|+.-|.....+++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 78889999999999999999999998853 2334445555543 3458889999988877766
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=1.2e-07 Score=88.16 Aligned_cols=120 Identities=21% Similarity=0.329 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
-+.....++..|..+...|++++|+..|++++...|+. +.++..+|.++...|++++|+..+.+++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34556678999999999999999999999999887653 468999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 169 (811)
.+|.++...|+...+...+..++. .+.+|++.+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 999999999998777766665543 2678888888888888876
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.82 E-value=1.1e-08 Score=82.14 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (811)
.|+|++|+..+++++..+|. +...++.+|.|++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 666666666666777777777777777777
Q ss_pred HHHH
Q 003548 125 IRQA 128 (811)
Q Consensus 125 ~~~a 128 (811)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=1.9e-08 Score=77.33 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 003548 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFP 167 (811)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p 167 (811)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 46666666666666555
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=1.1e-07 Score=93.43 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---CHHHH
Q 003548 33 GVTKMLGEASLQ-YAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALW 105 (811)
Q Consensus 33 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~ 105 (811)
+....+..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|++++|+..|.+++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456677777776 56789999999999999998886 578899999999999999999999998877766 46778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 003548 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL 138 (811)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 138 (811)
+.+|.++...|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 888888888888888888888888888877654
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=9.3e-07 Score=99.80 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCC--HHHHHHHHHHHHHcccHHHHHHH
Q 003548 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV-HPSDAD--LSVIDLLVAILMENNAYEKTLQH 228 (811)
Q Consensus 152 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 228 (811)
-.+..+-|++.+..+|+..-.|..+.....+.++.++|.+..++++.. ++...+ ..+|..+-++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788889999999999999999999999999999999999874 333222 23566666666667778888899
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 229 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
|+++.+. -.+..++..|..+|...+++++|.++|+.+++... +....|...+..++...+-+.|..++.+++..
T Consensus 1520 FeRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 9999876 56778889999999999999999999999998876 58899999999999999999999999999865
Q ss_pred cCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcc
Q 003548 309 AGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 309 ~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (811)
-|. +.......|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+-+..+|++++.+.-.
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 454 77888889999999999999999999999999999999999999999999999999999999876543
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=1.1e-07 Score=88.31 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 003548 82 GNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAA 156 (811)
Q Consensus 82 g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 156 (811)
..+..+...+...++..+.+ ...+..+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555566665555555544 5667899999999999999999999999887653 458999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCC
Q 003548 157 ESYEQIQKLFPDNVDATKTGAQLFL-------KCGQTA-------RSIGILEEYLKVHPSDA 204 (811)
Q Consensus 157 ~~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~l~~~p~~~ 204 (811)
..+++++.+.|.....+..++.++. ..|+++ +|+.++++++..+|.+.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999988888888888 666665 44444445555565543
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-07 Score=93.56 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
.++.+++.|+.++++|..|+....+++..+|+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred cCCHHHH-HHHHHHHHhhCC
Q 003548 183 CGQTARS-IGILEEYLKVHP 201 (811)
Q Consensus 183 ~g~~~~A-~~~~~~~l~~~p 201 (811)
...+.+. .+.|.+++..-+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 5555443 566677665433
No 171
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1.2e-06 Score=88.20 Aligned_cols=339 Identities=15% Similarity=0.093 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HccCCC--------CHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIA-AHLSPK--------DSALWK 106 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~p~--------~~~~~~ 106 (811)
....+...+....+...+....+.+..+..+.+.+.+..+..++..|++.+|.+.+... +...|. ....|.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 34445566677788888888888888888889999999999999999999999888553 222222 234578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---------cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIR---------AEP---------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~---------~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
++|.++++.|.|.-+..+|.++++ ..| ...+.+++.|..|...|++-.|.++|.++....-.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 999999999999999999999995 112 23567899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHH----------------HHhh--CCCCCC----HHHHHHHHHHHHHcccHH
Q 003548 169 NVDATKTGAQLFLKCGQ---TARSIGILEE----------------YLKV--HPSDAD----LSVIDLLVAILMENNAYE 223 (811)
Q Consensus 169 ~~~~~~~la~~~~~~g~---~~~A~~~~~~----------------~l~~--~p~~~~----~~~~~~l~~~~~~~g~~~ 223 (811)
+|..|..+|.++....+ .++-.....+ +++. .+..+. +..-.-++.++.+.+-+-
T Consensus 368 nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~L 447 (696)
T KOG2471|consen 368 NPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYL 447 (696)
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhc
Confidence 99999999998864321 1111111111 0000 000000 001112222222211000
Q ss_pred -----HHHHHHHHHHHH----------------------------hccCCC--------ChHHHHHHHHHHHHHcCCHHH
Q 003548 224 -----KTLQHIEHAQIV----------------------------RFSGKE--------LPLKLKVKAGICYLRLGNMEK 262 (811)
Q Consensus 224 -----~A~~~~~~a~~~----------------------------~~~~~~--------~~~~~~~~la~~~~~~g~~~~ 262 (811)
.--..+.-+... .|++.| ....++...+.+-..+|+.-.
T Consensus 448 l~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~ 527 (696)
T KOG2471|consen 448 LNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIK 527 (696)
T ss_pred CchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 000000000000 000111 112467778888888999999
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHH-----HHHcCChHHHHHHHHHHhhc-------------------------c---
Q 003548 263 AEILFADLQWKNAIDHADLITEVADT-----LMSLGHSNSALKYYHFLETN-------------------------A--- 309 (811)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~~~~~~-------------------------~--- 309 (811)
|+..-++++... +-..++..+|.+ ++-..+..+|...+..-.-. .
T Consensus 528 AL~~a~kLLq~~--~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r 605 (696)
T KOG2471|consen 528 ALSAATKLLQLA--DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGR 605 (696)
T ss_pred HHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCC
Confidence 998888877652 355555555444 45677777777766531100 0
Q ss_pred CC----C-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 310 GT----D-----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--DNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 310 ~~----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
.+ . ....++++|.++.-+|++++|..++..+..+-| .++++...-..+-..+|+...|+..+++..-
T Consensus 606 ~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 606 TRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred CcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 00 0 123678999999999999999999999998877 5677777777777889999999998886543
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=3e-08 Score=75.07 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 135 (811)
.+|..++..|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555666666666666666666666666666666666666666666666666666655554
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=2.9e-08 Score=79.63 Aligned_cols=79 Identities=30% Similarity=0.447 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 116 GDTAQAMYYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193 (811)
Q Consensus 116 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 193 (811)
|+++.|+..++++++.+|. +...++.+|.++...|++++|+..+++ ...+|.++.....+|.++..+|++++|++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444444444444444442 223333444444444444444444444 3344444444444444444444444444444
Q ss_pred HH
Q 003548 194 EE 195 (811)
Q Consensus 194 ~~ 195 (811)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.73 E-value=2.9e-05 Score=77.25 Aligned_cols=223 Identities=26% Similarity=0.309 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAH--LSPKDSALWKQLLTFAVQKGDTAQAM 122 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (811)
.+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+......+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666666654 356666666777777777777777766665 45666666666777777777777777
Q ss_pred HHHHHHHHcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 123 YYIRQAIRAEPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFP---DNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (811)
Q Consensus 123 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 198 (811)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777776666655444444444 66666666666666666666544 2334444444445556666666666666666
Q ss_pred hCCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc
Q 003548 199 VHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (811)
Q Consensus 199 ~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 275 (811)
..+. ... .+..++..+...+++..|...+..++.. .+.........+..+...+.++++...+.+.+...+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAE--ALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchH--HHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6555 232 4555666666666666666666666655 222233333344444444445555555555544433
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.3e-07 Score=92.46 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 149 (811)
++.+++.|+.+++++.+|+..+.+++..+|+|..+++..|.++...|+++.|+..|+++++.+|.|..+...+..+..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555544444444444433
Q ss_pred C
Q 003548 150 G 150 (811)
Q Consensus 150 g 150 (811)
.
T Consensus 339 ~ 339 (397)
T KOG0543|consen 339 R 339 (397)
T ss_pred H
Confidence 3
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.71 E-value=7.9e-05 Score=74.04 Aligned_cols=221 Identities=23% Similarity=0.263 Sum_probs=125.1
Q ss_pred cCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 81 LGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAA 156 (811)
Q Consensus 81 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (811)
.+.+..+...+.......+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666666654 356666667777777777777777777765 55666666777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 003548 157 ESYEQIQKLFPDNVDATKTGAQ-LFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (811)
Q Consensus 157 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 234 (811)
..+..++...+.+.......+. ++...|+++.|...+.+++...|. ..........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777666655444444444 666677777777777766554442 11112334444445556666666666666665
Q ss_pred HhccCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 235 VRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 235 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
. .+. .......++.++...+++++|...+..++...+. ....+..++..+...+.++++...+.+.+
T Consensus 196 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 196 L----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred h----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 233 3444445555555555555555555554444332 22333333333333333444444444444
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.69 E-value=5.1e-06 Score=78.27 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHH---HHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---LWK 106 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 106 (811)
.+..++.+|...++.|+|++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35668999999999999999999999999888764 567888999999999999999999999999887654 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 003548 107 QLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISL-----------------RIHLASFYVEIGDYEKAAESYEQ 161 (811)
Q Consensus 107 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~ 161 (811)
..|.++... .-..+|+..++..+...|++.-+ -...|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 556665432 12446777777888888875321 12245555555666666666666
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 003548 162 IQKLFPDN---VDATKTGAQLFLKCGQTARSIGI 192 (811)
Q Consensus 162 ~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 192 (811)
+++..|+. .+++..+..+|..+|-.++|...
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 65555443 24455555555555555555443
No 178
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=0.00061 Score=69.34 Aligned_cols=387 Identities=15% Similarity=0.037 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHH-HcCChHHHHHHHHHHHccC---CCC--
Q 003548 33 GVTKMLGEASLQYAYG--NFEQAISLLKEVVRLSPNL---PETYNTLGLAHS-ALGNHKSAFDFYVIAAHLS---PKD-- 101 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~---p~~-- 101 (811)
-...+++.|..+...| +...++++++.++...|.+ +.....+|.+++ ...+.+.|...++++..+. |+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567899999888899 9999999999999887763 456777777655 4789999999999998764 333
Q ss_pred --HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Q 003548 102 --SALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----V 170 (811)
Q Consensus 102 --~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~ 170 (811)
..+...|+.+|.... .+..|...+++++++....+ ...+.++.++.-..++..|.+.+.-.......- .
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL 165 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence 245678889988877 88999999999999876654 346789999999999999998854322211111 1
Q ss_pred HHHHHH--HHHHHHcCC---HHHHHHHHHHHHhhCCCCCCH----HH-HH-HHHHHHHHcccHHHHHHHHHHHHHHh---
Q 003548 171 DATKTG--AQLFLKCGQ---TARSIGILEEYLKVHPSDADL----SV-ID-LLVAILMENNAYEKTLQHIEHAQIVR--- 236 (811)
Q Consensus 171 ~~~~~l--a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~----~~-~~-~l~~~~~~~g~~~~A~~~~~~a~~~~--- 236 (811)
.+.+.+ +.++...-+ ...+......+.+....++.- .+ +. .-...|...|+...+...+++.-...
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 222222 223333333 334444444554443333210 11 11 12233455677776666666543221
Q ss_pred c------------cCCCCh--------HHHHHHHH--HHHHHcCCHHHHHHHHHHhhhccc---c-c-H--------HHH
Q 003548 237 F------------SGKELP--------LKLKVKAG--ICYLRLGNMEKAEILFADLQWKNA---I-D-H--------ADL 281 (811)
Q Consensus 237 ~------------~~~~~~--------~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~~~---~-~-~--------~~~ 281 (811)
. .+.+.. ..++..+. .--...|-+++|.++-++++.... . + . ...
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 1 011100 11111111 111234666777776666554211 0 0 1 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--cCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC-CH--H
Q 003548 282 ITEVADTLMSLGHSNSALKYYHFLETN--AGTD-------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-NI--D 349 (811)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--~ 349 (811)
+-.++.+-.-.|++.+|++....+.+. ..|. .+.+...+|......+.++.|...|..+.+.-.. +. -
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445566777899999999888766543 1222 4567778888888889999999999999887433 33 3
Q ss_pred HHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
+..++|..|.+.|+-+.-.+.++..-..+... .........+++..|...+.++++.||.....+.++.+
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s-----~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNS-----LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc-----chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 44678999999998777666666443222111 11223455688888888899999999988777766554
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=6.4e-07 Score=88.01 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=64.7
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003548 102 SALWKQLLTFA-VQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATK 174 (811)
Q Consensus 102 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~ 174 (811)
...++..+..+ ...|++++|+..|+..++..|++ +.+++.+|.+|...|++++|+..|+++++.+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34445554443 44566666666666666666665 3566666666666666666666666666666553 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
.+|.++...|++++|...|+++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666666666666666666666666666654
No 180
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00017 Score=74.41 Aligned_cols=378 Identities=13% Similarity=0.067 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 108 (811)
..|-++..|......+-.+ -+++....|++.+...|..+.+|.......+...+++.-...|.+++..-- +.+.|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence 4556777777766555444 899999999999999999999999999999999999999999988876432 35566543
Q ss_pred -HHHHHhcCCHHHHHHHHHHH----HH---cCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCH-
Q 003548 109 -LTFAVQKGDTAQAMYYIRQA----IR---AEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDNV- 170 (811)
Q Consensus 109 -a~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~- 170 (811)
..+-...|+...+....-++ +. .++.....|...+..+. ++.+.+.-...|++++..--.+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 33444455555544444333 33 34555666666555433 33356677788888876433332
Q ss_pred HHHHHH-----------H--HHHHHcCCHHHHHHHHHHHHhh-------CCC----CCC-----H---------------
Q 003548 171 DATKTG-----------A--QLFLKCGQTARSIGILEEYLKV-------HPS----DAD-----L--------------- 206 (811)
Q Consensus 171 ~~~~~l-----------a--~~~~~~g~~~~A~~~~~~~l~~-------~p~----~~~-----~--------------- 206 (811)
..|... | .+--....|..|...+++.... +|. ... .
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 122111 1 1111223344555555444321 111 000 0
Q ss_pred ---------------------------HHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHhccCCCChHH
Q 003548 207 ---------------------------SVIDLLVAILMENNA--------------YEKTLQHIEHAQIVRFSGKELPLK 245 (811)
Q Consensus 207 ---------------------------~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~ 245 (811)
.+|+..+..+...++ .+++..+|++++.... .....
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~---~~~~~ 329 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL---KENKL 329 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH---HHHHH
Confidence 112222222222222 3334444444433210 11112
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003548 246 LKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322 (811)
Q Consensus 246 ~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 322 (811)
+++.++..-...- +.+....++++++.....+..-++..+-+.-.+..-...|..+|.++.+.... ...++..-|.
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-RHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-cchhhHHHHH
Confidence 2222222111111 13334444444443322222334455555555566677788888877754222 2234433333
Q ss_pred H-HHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHH
Q 003548 323 C-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC 401 (811)
Q Consensus 323 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la 401 (811)
+ |..+++.+-|...|+-.+...++.+..-......+...|+-..|..+|++++.. ..+++ ...+++-.+.
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~--------ks~~Iw~r~l 479 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD--------KSKEIWDRML 479 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh--------hhHHHHHHHH
Confidence 2 445789999999999999999999999999999999999999999999998877 21111 1224555666
Q ss_pred HHHHhcCCchhHHHhhhHhh
Q 003548 402 HIYRAKGMPEDFVDAIFPLV 421 (811)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~~l 421 (811)
..-..-|+...++++-++..
T Consensus 480 ~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 66666677666665554443
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.68 E-value=5.2e-07 Score=93.24 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=95.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 153 (811)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455567888888888887776654 56667888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 154 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
.|+.+.+++....|.+...|..|+.+|...|+++.|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888776654
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.66 E-value=0.00027 Score=69.84 Aligned_cols=292 Identities=16% Similarity=0.081 Sum_probs=214.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcC
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSAL--WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFYVEIG 150 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 150 (811)
-|.+..-.|+-..|...-.++-.+-..+.+. +..-++...-.|+++.|..-|+.++. +|..- -.+..|-.--...|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence 4566667889999999888887554444443 44447777888999999999998876 34221 11222333345789
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCH-HHHHHHHHH-HHHcccHHHH
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV---HPSDADL-SVIDLLVAI-LMENNAYEKT 225 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~-~~~~~l~~~-~~~~g~~~~A 225 (811)
..+.|..+-+++....|.-+.++...-...+..|+++.|+++.+..... .++..+- .+...-+.. -.-..+...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 9999999999999999999999988888999999999999998876553 2322210 111111211 1223568889
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003548 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305 (811)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (811)
...-.++.++ .|.....-...+..+++.|+..++-.+++.+.+..| ++++ +..|....--+.++.-++++
T Consensus 249 r~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~i----a~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 249 RDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDI----ALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred HHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHH----HHHHHHhcCCCcHHHHHHHH
Confidence 9988899888 677777777888999999999999999999988776 3443 33444444444555555554
Q ss_pred hh--ccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHhhcCCCCCC
Q 003548 306 ET--NAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-AKEEEAITLLSPPKDL 377 (811)
Q Consensus 306 ~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 377 (811)
.. .-.|++......++.....-|++..|..--+.+....|.. .++..|+.+-... |+-.++...+.+++..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 32 2378899999999999999999999999999999988864 5677788887665 9999999999888764
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6.1e-07 Score=79.57 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=64.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 147 (811)
.-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.++++++.++.|+..+.++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 345555566666666666666666655432 234455666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003548 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 179 (811)
+...+++|++-|+++++.+|....+....+.+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 66666666666666666666655555444444
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=9.1e-07 Score=91.47 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 184 (811)
-..+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 335556667778999999999999988875 66678999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 003548 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 233 (811)
+++.|+.+.++++...|++.. .|..|+.+|...|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999886 79999999999999999999888653
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=1.1e-07 Score=72.72 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888888888888888888888888888888888888888888888888888877776666654
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=1e-06 Score=83.81 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---CHHHHHHH
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALWKQL 108 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 108 (811)
...+..|..++..|+|.+|...|...++..|+ .+.+++.||.+++.+|+++.|...|..+.+..|+ -+++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44899999999999999999999999999987 5789999999999999999999999999987765 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 142 (811)
|.+...+|+.++|...|+++++..|+...+....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999888887665443
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.5e-05 Score=74.19 Aligned_cols=203 Identities=19% Similarity=0.162 Sum_probs=149.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003548 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (811)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 253 (811)
...|.+....|+..+.+.-+...... ...+..........+..+..+++-+. .+.+.+..+
T Consensus 126 ~lhAe~~~~lgnpqesLdRl~~L~~~---------V~~ii~~~e~~~~~ESsv~lW~KRl~----------~Vmy~~~~~ 186 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRLHKLKTV---------VSKILANLEQGLAEESSIRLWRKRLG----------RVMYSMANC 186 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH---------HHHHHHHHHhccchhhHHHHHHHHHH----------HHHHHHHHH
Confidence 34456666667766666555544321 11222222222333444555544332 355677888
Q ss_pred HHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCHHHHHHHHHHHHHhc
Q 003548 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECYLSLK 328 (811)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g 328 (811)
+.-.|.|.-....+.++++.+|+..+.....+|.+-++.|+.+.|..+++.+.+. .......+..+.+.++.-.+
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 8889999999999999999888888999999999999999999999999865433 12345567778888899999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 003548 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY 404 (811)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 404 (811)
++.+|...|.+++..+|.++.+..+.|.++.-.|+..+|++.++.+....|.... ...+.+++..+|
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l---------~es~~~nL~tmy 333 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL---------HESVLFNLTTMY 333 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch---------hhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997643 334555565554
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.5e-06 Score=73.59 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK---DISLRIHL 142 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 142 (811)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345555555555566556666665555543222 334555555555555555555555555555554 44445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003548 143 ASFYVEIGDYEKAAESYEQIQ 163 (811)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~l 163 (811)
+.++...|++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555444
No 189
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.0015 Score=69.67 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=77.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccH
Q 003548 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330 (811)
Q Consensus 251 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 330 (811)
|.-+...|+++.|+.+|-++- .......+.....++.+|+.+++.+... ......|-.++.-|...|++
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhH
Confidence 444455555555555554431 1112223334445566666665544322 22333455667777778888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCc
Q 003548 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMP 410 (811)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 410 (811)
+-|.+.|.++= ....-..+|.+.|+++.|.++-++....... ...+...+.-+-.+|++
T Consensus 782 e~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t-------------~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 782 EIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEAT-------------ISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhH-------------HHHHHHhHHhHHhhcch
Confidence 88887776542 1223345677778888877776655432221 12455666667777888
Q ss_pred hhHHHhhhHhh
Q 003548 411 EDFVDAIFPLV 421 (811)
Q Consensus 411 ~~A~~~~~~~l 421 (811)
.+|.++|..+-
T Consensus 841 ~eaeqlyiti~ 851 (1636)
T KOG3616|consen 841 AEAEQLYITIG 851 (1636)
T ss_pred hhhhheeEEcc
Confidence 88877775543
No 190
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=0.00058 Score=72.66 Aligned_cols=287 Identities=16% Similarity=0.136 Sum_probs=154.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH------HHHc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQ------AIRA----EPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 173 (811)
+-..|.++.+..++++|++||++ ++++ .|... ..-...|.-+...|+++.|+..|-.+-. .
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------L 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------H
Confidence 33445566666667777777664 2222 23221 2223456666677777777776655421 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003548 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (811)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 253 (811)
..-........++.+|+..++.......... .+-.++.-|...|+|+-|.++|.++-.. ......
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~~~------------~dai~m 800 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEADLF------------KDAIDM 800 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcchh------------HHHHHH
Confidence 2223334455666777766666554443332 2456777788888888888877665322 123345
Q ss_pred HHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHH-------------HHHHHHH---------hhccCC
Q 003548 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA-------------LKYYHFL---------ETNAGT 311 (811)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-------------~~~~~~~---------~~~~~~ 311 (811)
|-+.|+|++|.++-++... |......|...+.-+-+.|+|.+| +..|.+. +...++
T Consensus 801 y~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhCh
Confidence 6667777777777666532 333444455555555555554444 4444321 111122
Q ss_pred C-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------cC-----------------CCHH--HHHH---------HHH
Q 003548 312 D-NGYLYLKLAECYLSLKERAHAIMFFYKALDR------FE-----------------DNID--ARLT---------LAS 356 (811)
Q Consensus 312 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-----------------~~~~--~~~~---------la~ 356 (811)
+ -.+....+|.-+...|+...|...|-++-+. .. .|.+ +.+. -..
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 2 2345566777777777777777666554221 10 1111 0111 113
Q ss_pred HHHHcCCHHHHHhhcCC------CCCC---CcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhhh
Q 003548 357 LLLEEAKEEEAITLLSP------PKDL---DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 426 (811)
Q Consensus 357 ~~~~~g~~~~A~~~~~~------a~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 426 (811)
++.+.|-.++|+..--. +.++ ...+. -.+++..++..+...|++++|-..|-.+++-...
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k----------~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK----------MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc----------CccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 44455555555544321 1111 11111 1237889999999999999999999988876543
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.52 E-value=5e-08 Score=93.41 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 184 (811)
....|.-|+.+|.|++|+.||.+++..+|.++..+.+.|..|+++..+..|..-+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888888888888888888888888888888888888888777888888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCCC
Q 003548 185 QTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 185 ~~~~A~~~~~~~l~~~p~~~~ 205 (811)
...+|.+.++.++.+.|.+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888888888887653
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=6.4e-06 Score=72.38 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 003548 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED--NIDARLTLA 355 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 355 (811)
...-.+.+|..+.+.|++.+|...|++++.....+++..+..++......+++..|...+++..+.+|. .++....++
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 455677889999999999999999998887666778889999999999999999999999999988875 577888889
Q ss_pred HHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
..+...|++.+|...|+.+++..|.. +.....+..+.++|+.++|..-+..+.+..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~-------------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGP-------------QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999888888753 355566788889998888887777766554
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=1.7e-05 Score=69.84 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003548 139 RIHLASFYVEIGDYEKAAESYEQIQK-LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217 (811)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~ 217 (811)
.+.++..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|....+.....++..+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 34444455555555555555544443 23344444445555555555555555555555444443322223344445555
Q ss_pred HcccHHHHHHHHHHHHHH
Q 003548 218 ENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 218 ~~g~~~~A~~~~~~a~~~ 235 (811)
..|.+.+|...|+.++..
T Consensus 172 a~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 172 AQGKYADAESAFEVAISY 189 (251)
T ss_pred hcCCchhHHHHHHHHHHh
Confidence 555555555555555444
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.50 E-value=3.8e-07 Score=69.81 Aligned_cols=61 Identities=30% Similarity=0.518 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 175 (811)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444433333
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=4.3e-06 Score=71.76 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH---HHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 106 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 106 (811)
....++..|...+..|+|++|++.|+.+....|. ...+...+|.+|+..|++++|+..+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3456899999999999999999999999988776 567889999999999999999999999999998775 4567
Q ss_pred HHHHHHHhcCC
Q 003548 107 QLLTFAVQKGD 117 (811)
Q Consensus 107 ~la~~~~~~g~ 117 (811)
..|.++..+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777766544
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=4.7e-06 Score=70.56 Aligned_cols=95 Identities=24% Similarity=0.225 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVDATKTG 176 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 176 (811)
.+++.+|.++-..|+.++|+..|++++...+.. ..+++.+|..+..+|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345666666777777777777777776654332 345666677777777777777777776666666 45555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003548 177 AQLFLKCGQTARSIGILEEYL 197 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~l 197 (811)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666677777666665544
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=4.8e-06 Score=79.36 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQ 178 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 178 (811)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4445555555555555555555555555543 3455555555555555555555555555555443 355555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 179 LFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
+...+|+.++|...|+++++..|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555555555555555544
No 198
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.0027 Score=64.87 Aligned_cols=372 Identities=16% Similarity=0.137 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CC----ChHHHHHHHHHHHHcC-ChHHHHHHHHHHHccCCCCH
Q 003548 32 PGVTKMLGEASLQY-AYGNFEQAISLLKEVVRLS---PN----LPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDS 102 (811)
Q Consensus 32 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~---p~----~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~ 102 (811)
-++...+..|..++ ...+++.|...++++..+. |. ..++...++.+|.... .+..|...+++++++..+.+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 35556677776655 5889999999999997653 33 2457788999998877 78899999999999876654
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------------cCCCCHHH-----------------
Q 003548 103 ----ALWKQLLTFAVQKGDTAQAMYYIRQAIR-----------------------AEPKDISL----------------- 138 (811)
Q Consensus 103 ----~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------~~p~~~~~----------------- 138 (811)
...+.|+.++.-..++..|++.+.-... ..|++.++
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd 203 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD 203 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence 3456778888888888888776432111 01111110
Q ss_pred ----------HHHHH-HHHHHcCCHHHHHHHHHHHHH---h-CCC-----------C-HH--HHH----HHHHHH-----
Q 003548 139 ----------RIHLA-SFYVEIGDYEKAAESYEQIQK---L-FPD-----------N-VD--ATK----TGAQLF----- 180 (811)
Q Consensus 139 ----------~~~la-~~~~~~g~~~~A~~~~~~~l~---~-~p~-----------~-~~--~~~----~la~~~----- 180 (811)
+..+- ..|...|+...+...++++-. . .+. + +. .|. .-+.+|
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 11111 123334554444444443321 1 110 0 00 000 001111
Q ss_pred --HHcCCHHHHHHHHHHHHhhCCCC---C-CH--------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCC-----
Q 003548 181 --LKCGQTARSIGILEEYLKVHPSD---A-DL--------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE----- 241 (811)
Q Consensus 181 --~~~g~~~~A~~~~~~~l~~~p~~---~-~~--------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 241 (811)
...|-+++|.++-++++...... . .. ..+..++.+-.-.|++.+|++.+..+.+.....+.
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 23455667777666666542111 1 10 12334455556678888888888877765322111
Q ss_pred -ChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHH--HHHHHHHHHHHcCChHHHHHHHHHHhhc-cCCC-----
Q 003548 242 -LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD--LITEVADTLMSLGHSNSALKYYHFLETN-AGTD----- 312 (811)
Q Consensus 242 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~----- 312 (811)
....+...+|......+.++.|..+|..+.+.....+.. +..++|..|...|+-+.-.+.++.+-.. ..+.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 234567778888888899999999999987764433333 3467799999988776655555543321 0111
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC-C-----HHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCC
Q 003548 313 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-N-----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDK 386 (811)
Q Consensus 313 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 386 (811)
...+++..|...+.++++.+|...+.+.++.... + .-.+..|+.+..-.|+..++.+....+.+.....++ .
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D--i 521 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD--I 521 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC--c
Confidence 2456778888889999999999999999987521 1 233456788888999999999999988877665543 1
Q ss_pred CChhhhhHHHHHHHHHHHHhcCC
Q 003548 387 SNPWWLNEKIIMKLCHIYRAKGM 409 (811)
Q Consensus 387 ~~~~~~~~~~~~~la~~~~~~g~ 409 (811)
+.-.| ....+-.+|...|+
T Consensus 522 ~vqLw----s~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 522 PVQLW----SSSILTDLYQALGE 540 (629)
T ss_pred hHHHH----HHHHHHHHHHHhCc
Confidence 22233 33444555666665
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.44 E-value=1.3e-06 Score=67.96 Aligned_cols=62 Identities=31% Similarity=0.492 Sum_probs=28.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444444444444444444444444444444444444444444444444444444444433
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=1.1e-06 Score=68.32 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=34.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHH
Q 003548 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 105 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 105 (811)
.++..+++++|+..+++++..+|+++..+..+|.++...|++.+|...|+++++..|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 445555555555555555555555555555555555555555555555555555555554443
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=2.5e-06 Score=75.37 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHHHHHHHhch--
Q 003548 661 HQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGL-- 738 (811)
Q Consensus 661 y~~A~~~y~~a~~~~p~~p~~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~gr~~~~~g~-- 738 (811)
|+.|...|..+|..+|.|+-.+..=|.++++.|--++..+...++.+|++-|.+...+.|+.-+++||+|.+|..+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999999998766656666899999999999999999999999999999998876
Q ss_pred ---------hHHHHHHHHHHHcchhcc
Q 003548 739 ---------VSLAASYYEKVLAIKEKD 756 (811)
Q Consensus 739 ---------~~~Ai~~YekvL~~~~~~ 756 (811)
+.+|..||+++.+..|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788999999999888863
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.37 E-value=0.00022 Score=67.56 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 003548 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD---ATKT 175 (811)
Q Consensus 102 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~ 175 (811)
+..|+.-|...++.|++++|+..|+.+....|.. ..+...++.++.+.+++++|+...++.+.+.|.+++ +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445555555556666666666666665555433 345555666666666666666666666666655432 3334
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHH
Q 003548 176 GAQLFLKC--------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK 247 (811)
Q Consensus 176 la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 247 (811)
.|.+++.. .-..+|+..++..+...|++.-. .-+ ..-+..+...+. .--
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya----~dA---------~~~i~~~~d~LA----------~~E 170 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA----PDA---------KARIVKLNDALA----------GHE 170 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch----hhH---------HHHHHHHHHHHH----------HHH
Confidence 44443321 11335566666666666665421 000 000011111110 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcccc--cHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 248 VKAGICYLRLGNMEKAEILFADLQWKNAI--DHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 248 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
...|..|.+.|.+..|+..++.+++..+. ...+++..+..+|...|-.++|...-.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 23445555555555555555555554331 133455555666666666666554443
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=6.9e-06 Score=73.05 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 183 (811)
|.-++..|+|++|..-|..++...|..+ ..+.+.|.++.+++.++.|+....++++++|.+..++...|.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4444445555555555555555544321 23444455555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 003548 184 GQTARSIGILEEYLKVHPSD 203 (811)
Q Consensus 184 g~~~~A~~~~~~~l~~~p~~ 203 (811)
..+++|+..|.++++.+|..
T Consensus 182 ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHHHHHHHHHHHHHhCcch
Confidence 55555555555555555544
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=2.1e-05 Score=67.54 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTG 176 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l 176 (811)
..++.-|...++.|+|++|++.|+.+....|.. ..+.+.++.+|...+++++|+..+++.++++|.++ -+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 334444555555555555555555555444432 34445555555555555555555555555555443 234444
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhhCCCCC
Q 003548 177 AQLFLKCGQ---------------TARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 177 a~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~ 204 (811)
|.+++.... ...|...|++++...|++.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 444444433 4455555666666555543
No 205
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.30 E-value=3.9e-05 Score=79.35 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=85.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHH
Q 003548 252 ICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA 331 (811)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 331 (811)
..+...|+...|..++..++...|.+.......++.++...|...+|-.++.+.+.. ....+-.++.+|..+..+.+.+
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-NSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-cccCchHHHhcchhHHHHhhhH
Confidence 334456888888888888887777666667788888888888888888888888776 4677788888888888889999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003548 332 HAIMFFYKALDRFEDNIDARLTLASLLL 359 (811)
Q Consensus 332 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (811)
.|++.|+++++.+|+++.+-..|-.+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999988888887776665554
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00057 Score=75.46 Aligned_cols=281 Identities=17% Similarity=0.112 Sum_probs=203.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
|.+....+-|++|..+|++. .-+..+...+ -...+..+.|.++.++. +.+.+|..+|.+..+.|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 55666666777777777653 1122222222 22456677777776664 567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 200 (811)
|++.|-++ +++..+.....+..+.|.|++-+.++..+.+.. ..+.+-..+..+|.+.++..+-.+.+ ..
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi-----~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFI-----AG 1191 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHh-----cC
Confidence 99998664 677788888999999999999999888776543 33444456666777788776654432 35
Q ss_pred CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHH
Q 003548 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD 280 (811)
Q Consensus 201 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 280 (811)
|+... ....|.-++..|.|+.|.-+|..... +..++..+..+|+|..|...-+++ .+..
T Consensus 1192 pN~A~---i~~vGdrcf~~~~y~aAkl~y~~vSN------------~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1192 PNVAN---IQQVGDRCFEEKMYEAAKLLYSNVSN------------FAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred CCchh---HHHHhHHHhhhhhhHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 66654 56788889999999988877765432 467888899999999999988886 4677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003548 281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360 (811)
Q Consensus 281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 360 (811)
.|.....++...+.+.-|.-+= ..---.++-+-.+...|...|-+++-+..++.++-+...+......||-+|.+
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCG-----L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICG-----LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcC-----ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 8889999998888887765332 11122455566777889999999999999999998888888888888888865
Q ss_pred cCCHHHHHhhc
Q 003548 361 EAKEEEAITLL 371 (811)
Q Consensus 361 ~g~~~~A~~~~ 371 (811)
- ++++-.+.+
T Consensus 1326 y-kp~km~EHl 1335 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHL 1335 (1666)
T ss_pred c-CHHHHHHHH
Confidence 4 344444443
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00033 Score=64.37 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS----P--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 102 (811)
+.......+..-|+.+--..++..|-..|.++-... . +.+..|...+.||. .+++.+|..++++++++..+-.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence 444445555566777778899999999998886542 1 13445666666665 5599999999999999875433
Q ss_pred H------HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003548 103 A------LWKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (811)
Q Consensus 103 ~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 169 (811)
. .+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|+++....-++
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 355888988765 89999999999998754322 2356677888889999999999999998876665
Q ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003548 170 V-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216 (811)
Q Consensus 170 ~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~ 216 (811)
+ +.++.-|.+++-..+.-.+...+++..+.+|...+.+-...+..+.
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 4 3345567777777888888899999999999987754444444444
No 208
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0038 Score=64.81 Aligned_cols=353 Identities=10% Similarity=0.029 Sum_probs=207.2
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 003548 58 KEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS 137 (811)
Q Consensus 58 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 137 (811)
++-++.+|.+.++|+.|..-+..+ -+++....|++.+...|..+.+|.......+...+++.....|.+++..-- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 677899999999999999988776 999999999999999999999999999999999999999999999987432 344
Q ss_pred HHHH-HHHHHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhC
Q 003548 138 LRIH-LASFYVEIGDYEKAAE----SYEQIQKL---FPDNVDATKTGAQLFL---------KCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 138 ~~~~-la~~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~ 200 (811)
.|.. +..+-...|+...+.. .|+-++.. ++....+|...+..+. ...+.+.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 4443 3333444555544444 44444432 4555667777766543 2334555667788887543
Q ss_pred CCCCCHHHHHH-----------HH--HHHHHcccHHHHHHHHHHHHHHhc------------------------------
Q 003548 201 PSDADLSVIDL-----------LV--AILMENNAYEKTLQHIEHAQIVRF------------------------------ 237 (811)
Q Consensus 201 p~~~~~~~~~~-----------l~--~~~~~~g~~~~A~~~~~~a~~~~~------------------------------ 237 (811)
-.+.+ ..|.. +| .+-.....|..|...+++......
T Consensus 168 m~nlE-kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 MHNLE-KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred cccHH-HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 22221 11211 11 112223455566666655433210
Q ss_pred -cC-------------------------CCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHhhhccccc
Q 003548 238 -SG-------------------------KELPLKLKVKAGICYLRLGN--------------MEKAEILFADLQWKNAID 277 (811)
Q Consensus 238 -~~-------------------------~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~ 277 (811)
.+ -...+++|+..+..+...++ .+++..++++.+......
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 00 01112233333333333333 345555555554433322
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003548 278 HADLITEVADTLMSLG---HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTL 354 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 354 (811)
+...++.++..-...- +++..-..+++++.....+-.-+|..+-..-.+..-...|...|.++-+..-..-+++..-
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3333333333322222 2445555566655443333333444444444455556677777777765432222333333
Q ss_pred HHH-HHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhhh
Q 003548 355 ASL-LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (811)
Q Consensus 355 a~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 425 (811)
|.+ |...++.+-|..+|+--+...++++. ..+.....+...|+-..+..+|++++...+
T Consensus 407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~------------yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFELGLKKFGDSPE------------YVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCChH------------HHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 322 33467888888888887777777643 455666677778888888888888877643
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.23 E-value=1.8e-05 Score=81.16 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=54.5
Q ss_pred hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003548 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRA 131 (811)
Q Consensus 63 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 131 (811)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777888888888888888888888888888888887744 788888888888888888888888775
No 210
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-05 Score=73.15 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHH
Q 003548 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (811)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 107 (811)
+..++.+..+-.+|+.++....|+.|+..|.++|.++|..+..|.+.+.|+++..+++.+....++++++.|+....++.
T Consensus 4 ~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 4 PEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred cccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 003548 108 LLTFAVQKGDTAQAMYYIRQAIRA 131 (811)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~al~~ 131 (811)
+|.+......+++|+.+++++..+
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999664
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=7.1e-05 Score=75.88 Aligned_cols=319 Identities=13% Similarity=0.086 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCChHHHHHHHHHHH--cc---CCC----
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLA-HSALGNHKSAFDFYVIAA--HL---SPK---- 100 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~--~~---~p~---- 100 (811)
..+-..+...+...+..+.|+...+.++..-..+.++...++..+.+ |+..|.+... ...+... .. .|.
T Consensus 14 ~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~~ 92 (696)
T KOG2471|consen 14 EDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVSS 92 (696)
T ss_pred cchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchhc
Confidence 34556677888889999999999999999888877665555555544 4555544321 1222111 11 121
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Q 003548 101 ------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-P---KD-ISLRIHLASFYVEIGDYEKAAESYEQIQKL---F 166 (811)
Q Consensus 101 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p---~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~ 166 (811)
.....++.|.++.....+..|+......+..- | .. ...-+..-.++....+.++|+.++.-.-++ .
T Consensus 93 gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~ 172 (696)
T KOG2471|consen 93 GLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEK 172 (696)
T ss_pred chhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23445666677766667777766655554421 1 01 111222333444455555555444322211 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHH
Q 003548 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 246 (811)
Q Consensus 167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 246 (811)
...+..-..-+....+.+-...|..-+-. .++.. .+.......+....+...+..-.+.++.+ .......
T Consensus 173 ~~~~~gn~~~~nn~~kt~s~~aAe~s~~~---a~~k~---~~~~ykVr~llq~~~Lk~~krevK~vmn~----a~~s~~~ 242 (696)
T KOG2471|consen 173 RMKLVGNHIPANNLLKTLSPSAAERSFST---ADLKL---ELQLYKVRFLLQTRNLKLAKREVKHVMNI----AQDSSMA 242 (696)
T ss_pred hccccccccchhhhcccCCcchhcccchh---hccch---hhhHhhHHHHHHHHHHHHHHHhhhhhhhh----cCCCcHH
Confidence 00000000001111111222222111110 01111 12233344445555566666555555555 3445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh-hcccc-----c--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----------
Q 003548 247 KVKAGICYLRLGNMEKAEILFADLQ-WKNAI-----D--HADLITEVADTLMSLGHSNSALKYYHFLETN---------- 308 (811)
Q Consensus 247 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~-----~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 308 (811)
.+..+..++-.|++.+|.+.+...- ...+. . ....|+++|.+++..|.|.-+..+|.+++..
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~ 322 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK 322 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6666777777888888888776631 11111 0 2234677888888888888888888877741
Q ss_pred -------cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003548 309 -------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360 (811)
Q Consensus 309 -------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 360 (811)
.....-.+.++.|..|...|++-.|.++|.+++.....+|..|..++++...
T Consensus 323 ~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 323 PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1122457889999999999999999999999999999999999999998765
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.18 E-value=9.6e-05 Score=60.97 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC----HHHHHHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTF 111 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~ 111 (811)
.+-.+|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|+..+.+++++.... ..++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344568888899999999999999999999999999999999999999999999999999886433 3457788999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 003548 112 AVQKGDTAQAMYYIRQAIRAEP 133 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al~~~p 133 (811)
|...|+-+.|..-|..+.++..
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999988877654
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00031 Score=65.63 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHL 142 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 142 (811)
+.+.+..++.-.|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+++++-+.. .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666777777777777777766 4566666677777777777777777777543321 1233455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
+.++.-.+++..|...|.+++..+|.++.+..+.|.|....|+..+|++.++.++...|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 66677777777777777777777777777777777777777777777777777777766543
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.14 E-value=0.019 Score=61.04 Aligned_cols=364 Identities=14% Similarity=0.062 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 003548 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF-AVQKGDTAQAMYYIRQAI 129 (811)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 129 (811)
+.+...|...+...|-....|...|..-.+.|..+.+...|++++.--|-....|..+-.. -...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566777788888999999999999999999999999999999999999888888866444 345688888888899988
Q ss_pred HcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHh--
Q 003548 130 RAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK------CGQTARSIGILEEYLK-- 198 (811)
Q Consensus 130 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~~l~-- 198 (811)
.....+ ...|-.....-..++++..-...|++.++.--.....++..=.-+.. .-..+++.+.-.....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 865433 34566666666788889999999999887532222211111111111 1122222222111111
Q ss_pred -----------------h--CCCCCCHHHHHHHHH-------HHHHcccHHHHHHHHHHHHHHh----ccCCCChHHHHH
Q 003548 199 -----------------V--HPSDADLSVIDLLVA-------ILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKV 248 (811)
Q Consensus 199 -----------------~--~p~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~ 248 (811)
. .|..........+.. ++.......+.+..++..+... .+..+.....|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0 111100001111111 1112222222333333333220 011223345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhc
Q 003548 249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK 328 (811)
Q Consensus 249 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 328 (811)
.........|+++...-.|++++-... ...+.|...+......|+.+-|-..+.++.+...+..+.+...-+......|
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 777778889999999999999865544 4788999999999999999999999998888878889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH---hhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHH-H
Q 003548 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI---TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHI-Y 404 (811)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~ 404 (811)
++..|...++++.+..|+..++-..-+....+.|+.+.+. +++........... .-...+...++. +
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~---------i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG---------ILEKLYVKFARLRY 451 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc---------hhHHHHHHHHHHHH
Confidence 9999999999999999999999888888899999999888 44443333222211 112233444443 3
Q ss_pred HhcCCchhHHHhhhHhhhhh
Q 003548 405 RAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 405 ~~~g~~~~A~~~~~~~l~~~ 424 (811)
.-.++.+.|...+..+++.-
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDIL 471 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcC
Confidence 34466777777777666543
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.11 E-value=7e-05 Score=77.00 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003548 97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL---RIHLASFYVEIGDYEKAAESYEQIQKL 165 (811)
Q Consensus 97 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 165 (811)
.+|+++.+|+++|.++...|++++|+.+|+++++++|++..+ ++++|.+|..+|++++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999999999999999988854 899999999999999999999999887
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00031 Score=67.62 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH-HHHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQL 108 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l 108 (811)
++++....+..+......|++.+|...|..++...|++.++...++.||...|+.+.|...+...-....... ......
T Consensus 130 ~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 130 LPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred cChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3445566777888889999999999999999999999999999999999999999999888766432222111 110111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH
Q 003548 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQT 186 (811)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~ 186 (811)
...+.+.....+. ..+++.+..+|++.++.+.+|..+...|+.+.|.+.+-.+++.+-. +..+...+..++...|.-
T Consensus 210 i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 210 IELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 1222232222222 2344555668888888888888888888888888888877776543 345566666666555544
Q ss_pred HHHHHHH
Q 003548 187 ARSIGIL 193 (811)
Q Consensus 187 ~~A~~~~ 193 (811)
+.+...+
T Consensus 289 Dp~~~~~ 295 (304)
T COG3118 289 DPLVLAY 295 (304)
T ss_pred CHHHHHH
Confidence 4433333
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0011 Score=64.28 Aligned_cols=157 Identities=14% Similarity=0.008 Sum_probs=79.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHcC
Q 003548 75 GLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKD---ISLRIHLASFYVEIG 150 (811)
Q Consensus 75 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 150 (811)
+.+....|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++++.. +|+. ..+.-.++..+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 334444555555555555555555555555555555555555555555555555544 3333 222333444555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcccHHHHHHH
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD--LSVIDLLVAILMENNAYEKTLQH 228 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 228 (811)
-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+--..-..... ..-|...+..+...+.|+.|+.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 5555555555555555555555555555555555555555554443221111000 00123344455555555555555
Q ss_pred HHH
Q 003548 229 IEH 231 (811)
Q Consensus 229 ~~~ 231 (811)
|.+
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 554
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.01 E-value=5.6e-06 Score=52.83 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=29.6
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
+++||+|.+|..+|.+..|+++|+++|++.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 68999999999999999999999999999885
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.98 E-value=6.6e-05 Score=66.62 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-----------YEKAAESYEQIQKLFPDNVD 171 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~ 171 (811)
++|+.-|+.++.++|+..++++.+|.+|...+. |++|..+|+++...+|++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 445555666666666666666666666554432 44555555555555555443
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.00025 Score=58.59 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHH
Q 003548 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD--LSVIDLLVAILM 217 (811)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~l~~~~~ 217 (811)
-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-.|+.++|+..+++++++..+... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777777777777777777777777776544332 235666777777
Q ss_pred HcccHHHHHHHHHHHHHH
Q 003548 218 ENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 218 ~~g~~~~A~~~~~~a~~~ 235 (811)
..|+-+.|...|+.+.+.
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 777777777777777665
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2e-05 Score=53.60 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003548 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (811)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (811)
+.++..+|.+|..+|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999999999999999999999999999999998875
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.94 E-value=9.4e-06 Score=63.99 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC---C-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003548 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLS---P-K---DSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (811)
Q Consensus 68 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 130 (811)
+.++..+|.+|..+|++++|+.+|++++.+. + + ...++..+|.++...|++++|+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555331 1 1 122344445555555555555555555443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.93 E-value=2.2e-05 Score=61.82 Aligned_cols=67 Identities=31% Similarity=0.499 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---C---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 003548 278 HADLITEVADTLMSLGHSNSALKYYHFLETNA---G---TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (811)
...++..+|.++...|++++|+.+|++++... . +..+.++.++|.++..+|++++|++++++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 55677788888888888888888888766441 1 1235577888888888888888888888888753
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0058 Score=56.87 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=109.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC-CCChHHHHHHHH
Q 003548 177 AQLFLKCGQTARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KELPLKLKVKAG 251 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la 251 (811)
+..|...+++++|...+.++.+-..++..+ .++-..+.+......+.++..+++++...+... .|.....-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 344444444555544444444333222221 122233334444445555555555554443211 122222222222
Q ss_pred HHHHHcCCHHHHHHHHHHhhhccc-----ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCHHHHHHHH
Q 003548 252 ICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLA 321 (811)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la 321 (811)
--.....++++|+.+|++.+.... ....+.+-..++++....++.+|-..+.+-... ..+.....+....
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~i 197 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAI 197 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHH
Confidence 233445667777777777543211 112345666788888888998888777653211 1233445566666
Q ss_pred HHHHHhccHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHhhcCC
Q 003548 322 ECYLSLKERAHAIMFFYKALDR----FEDNIDARLTLASLLLEEAKEEEAITLLSP 373 (811)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 373 (811)
.+|....+|..|..+++...++ .|++..+..+|-..| ..|+.++..+++..
T Consensus 198 lv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 7777788999999999997765 345666777777766 67899998888763
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.0011 Score=68.35 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003548 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219 (811)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~ 219 (811)
..+..-..+..+...-++.-.++++++|+.++++..||.- ...-..+|..+++++++....... ........
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~ 243 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG------KSQFLQHH 243 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcc
Confidence 3444455567778888888899999999888888877752 233467888888888775432221 00001111
Q ss_pred ccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcCChHHH
Q 003548 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSA 298 (811)
Q Consensus 220 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 298 (811)
|..-+. .. ..+......+...+|.|..++|+.++|++.++.+++..|. +...+...+..++...+.|.++
T Consensus 244 g~~~e~-------~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 244 GHFWEA-------WH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred cchhhh-------hh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 111111 10 1112233456678899999999999999999999887765 4667888999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHHhcCCCHHHHH
Q 003548 299 LKYYHFLETNAGTDNGYLYLKLAECYLS-LKE---------------RAHAIMFFYKALDRFEDNIDARL 352 (811)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 352 (811)
..++.+.-+...|..+...+..|.+-.+ .++ -..|.+.+.+|++.+|.-+..+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 9999887654456667666666554332 122 13467889999999998776544
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00024 Score=71.51 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE-IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666666666667777777777775555556677777777555 4445557777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 183 CGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 183 ~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
.|+.+.|..+|++++..-|... .-.+|......-...|+.+....+.+++.+.++
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 7777777777777776655544 334677777777777777777777777777744
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00032 Score=70.69 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
+|..+.....+.+..+.|...|.+|....+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 444555555555556666666666654444455556666666444 3444446666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003548 149 IGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (811)
Q Consensus 149 ~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 202 (811)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666665544433 45555555555666666666666666655555
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.84 E-value=3.7e-05 Score=52.30 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
++..+|..|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444444555555555555555555555555444444444
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0027 Score=58.98 Aligned_cols=125 Identities=10% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCHHHH
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-----PKDISLR 139 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 139 (811)
|..-+.+|....++++|..++.++.+-..++. .++-..+.+......+.++..+++++.... |+....-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 33445555556666666666666654332221 112233333344444555555555544321 2222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEE 195 (811)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 195 (811)
...+-=..+.-++++|+.+|++++.+...+ .+.+...+.++.+...+.+|-..+.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 222222333444555555555554443221 12333444555555555555444443
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.013 Score=54.19 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccC-----CCC-HHHHHHHHHHHHhcCCHHH
Q 003548 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-----PKD-SALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~~-~~~~~~la~~~~~~g~~~~ 120 (811)
.+.+++|.++|.++- ..|....++..|-..|.++.... ..+ ...+...+.+| +.++..+
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHH
Confidence 446777777777662 33333344444444444443221 111 22233333333 3447777
Q ss_pred HHHHHHHHHHcCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 003548 121 AMYYIRQAIRAEPKDIS------LRIHLASFYVEI-GDYEKAAESYEQIQK 164 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~l~ 164 (811)
|+.++++++++..+-.. .+..+|.+|..- .++++|+.+|+++-+
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 77777777664432211 122344444332 444444444444443
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.073 Score=57.18 Aligned_cols=249 Identities=17% Similarity=0.159 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHcCCHHH
Q 003548 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---------ISLRIHLASFYVEIGDYEK 154 (811)
Q Consensus 84 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~ 154 (811)
.++|.++.+ .+| .+..|..+|......-.++-|...|-+.-.. |.- ..--...+.+-.--|++++
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 455655543 344 6888999998888877777777777665321 111 0011334555566788999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 003548 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (811)
Q Consensus 155 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 234 (811)
|.+.|-.+-+. + ....++...|++-...++++..-.-+.+.....++..+|..+.....|++|.++|...-.
T Consensus 753 aek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99888765322 1 233566777888777776665332222222345789999999999999999999987654
Q ss_pred HhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCH
Q 003548 235 VRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG 314 (811)
Q Consensus 235 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 314 (811)
. -++..|++...++++-..+...+ | ++...+-.+|..+...|.-++|.+.|-+.- .|..+
T Consensus 825 ~------------e~~~ecly~le~f~~LE~la~~L----p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~pkaA 884 (1189)
T KOG2041|consen 825 T------------ENQIECLYRLELFGELEVLARTL----P-EDSELLPVMADMFTSVGMCDQAVEAYLRRS---LPKAA 884 (1189)
T ss_pred h------------HhHHHHHHHHHhhhhHHHHHHhc----C-cccchHHHHHHHHHhhchHHHHHHHHHhcc---CcHHH
Confidence 3 24667788888887766666555 3 466778889999999999999999884322 22211
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCC
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPP 374 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 374 (811)
...+..++++.+|.+.-++-- -|.-.......+.-+...++.-+|++..+++
T Consensus 885 ------v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 885 ------VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ------HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 124456788888887765431 2322222333444556677788888776654
No 232
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.82 E-value=0.022 Score=64.69 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=90.4
Q ss_pred hhhcchhhcccchHHHHHHHHHHHhh----------CCCChH---------HHHHHHHHHHHHHhCccccchHHHHHHHH
Q 003548 649 IISGHQFTMASHHQDAARCYLEAYKL----------LPENPL---------INLCVGSALINLALGFRLQNKHQCLAQGF 709 (811)
Q Consensus 649 ~~~g~~~~~~~~y~~A~~~y~~a~~~----------~p~~p~---------~~l~la~a~~~~~~~r~~~~r~~~~~q~~ 709 (811)
++.|-.....++...|..++.++++. .|..|+ .....-..+++.++.+.+......+.+.+
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 34466666666666888888877643 111121 11222333444555555556666788888
Q ss_pred HHHHHhHhhcCC------CchhhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCccccCCCCCCCCccHH
Q 003548 710 AFLYNNLRLCEH------SQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQRE 783 (811)
Q Consensus 710 ~~l~~y~~~~~~------~~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 783 (811)
.++.+...-.|. ..-++|-.|-.+|..|....|..+|.++.-.-++- ....+...+|..=
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~--------------~~~~~~~~El~il 450 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA--------------ANRKSKFRELYIL 450 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh--------------hccCCcchHHHHH
Confidence 888887553332 47889999999999999999999999877332210 0111234569999
Q ss_pred HHHHHHHHHHhcCCHHH
Q 003548 784 AAYNLHLIYKNSGAVDL 800 (811)
Q Consensus 784 aa~Nl~~iy~~~g~~~~ 800 (811)
|+.|+.+|+...+....
T Consensus 451 a~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 451 AALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHhHhhcccch
Confidence 99999999997776444
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.81 E-value=0.017 Score=62.77 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=113.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHH-----HHHHHHHHH----HcCCHHH
Q 003548 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL-----KVKAGICYL----RLGNMEK 262 (811)
Q Consensus 192 ~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~la~~~~----~~g~~~~ 262 (811)
.|.-++..-|.. ...+..+.--.||-+.++..+.++.+..+ -..+.-. ++.....+. .....+.
T Consensus 179 ~f~L~lSlLPp~-----~~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 179 LFNLVLSLLPPK-----VLKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHhCCHH-----HHHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 344455555542 33444555556777777777777765311 1111111 111111111 2346677
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 003548 263 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA---GTDNGYLYLKLAECYLSLKERAHAIMFFYK 339 (811)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 339 (811)
|..++.......| +..-..+..|+++...|+.++|++.|++++... ..-..-.++.+|.++..+.+|++|..++.+
T Consensus 252 a~~lL~~~~~~yP-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 252 AEELLEEMLKRYP-NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888888777 366777778888888888888888888766421 112345677888888888888888888888
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHcCCH-------HHHHhhcCCCCCCCc
Q 003548 340 ALDRFEDN-IDARLTLASLLLEEAKE-------EEAITLLSPPKDLDS 379 (811)
Q Consensus 340 al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~ 379 (811)
..+.+.-. .-..+..|.++...|+. ++|.+++.++-....
T Consensus 331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 88765443 33345567788888887 888888887765544
No 234
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.79 E-value=0.01 Score=66.02 Aligned_cols=279 Identities=16% Similarity=0.085 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHhcC--
Q 003548 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL-----GNHKSAFDFYVIAAHL-----SPKDSALWKQLLTFAVQKG-- 116 (811)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g-- 116 (811)
+..+|...++.+... .+..+...+|.+|..- .|.+.|+.+|..+... .-.++.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888777654 4678888888888764 5889999999888761 1125567788888888753
Q ss_pred ---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCH
Q 003548 117 ---DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC----GQT 186 (811)
Q Consensus 117 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~ 186 (811)
+...|..+|.++.+.. ++++.+.+|.++..-. +...|.++|..+... .+..+.+.++.+|..- -+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6778999998887754 5667788888887655 578899999888765 5678888888887653 467
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhccCCCC-hHHHHHHHHHHHHHc----CCH
Q 003548 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIVRFSGKEL-PLKLKVKAGICYLRL----GNM 260 (811)
Q Consensus 187 ~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~----g~~ 260 (811)
..|..++.++.+..+-. +...++.++... +.+..+...+....+. +...+. ............... .+.
T Consensus 381 ~~A~~~~k~aA~~g~~~----A~~~~~~~~~~g~~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPS----AAYLLGAFYEYGVGRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred HHHHHHHHHHHHccChh----hHHHHHHHHHHccccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 88888998888876221 333444444332 6666666665555443 100000 000000000011111 133
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHc----CChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh---ccHHHH
Q 003548 261 EKAEILFADLQWKNAIDHADLITEVADTLMSL----GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL---KERAHA 333 (811)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A 333 (811)
+.+...+.++... .+..+...+|.+|..- .+++.|...|..+... . +...+++|.++..- .....|
T Consensus 456 ~~~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-G---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred hHHHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-h---hHHHhhhhhHHhcCcCcchhHHH
Confidence 3444444443322 2445556666665543 2466666666666543 1 66666666666531 115666
Q ss_pred HHHHHHHHHhcC
Q 003548 334 IMFFYKALDRFE 345 (811)
Q Consensus 334 ~~~~~~al~~~p 345 (811)
..+|.++.+.+.
T Consensus 529 ~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 529 KRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHhcCc
Confidence 666666655443
No 235
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0073 Score=67.20 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=188.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 003548 43 LQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 119 (811)
.++..+-..+-++++++++-.+.. +......+..... .-+.....++..+.-..+.. .+|.+....+-++
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~------~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAP------DIAEIAIENQLYE 1065 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCch------hHHHHHhhhhHHH
Confidence 456677778889999988754332 2223333333322 34556667777765443322 2566667777788
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
+|...|++- .-+..+... +....+..+.|.++-+++ +.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1066 EAF~ifkkf----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKF----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHHHHh----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 888888763 123333222 233456777777777665 56788888888888888888888877654
Q ss_pred CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH
Q 003548 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (811)
Q Consensus 200 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (811)
+++. .+.....+....|.|++-+.++..+.+... .+.+-..+..+|.+.++..+-...+. .| +.
T Consensus 1131 --dDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-----E~~id~eLi~AyAkt~rl~elE~fi~-----gp--N~ 1194 (1666)
T KOG0985|consen 1131 --DDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVR-----EPYIDSELIFAYAKTNRLTELEEFIA-----GP--NV 1194 (1666)
T ss_pred --CCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-----CccchHHHHHHHHHhchHHHHHHHhc-----CC--Cc
Confidence 2332 566778888888888888888887776521 22223345556666666655443321 12 33
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------
Q 003548 280 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR---------------- 343 (811)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 343 (811)
.-...+|+-++..|.|+.|.-+|..+ .-|..++..+..+|+|..|...-+++-..
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 33455677777777777776665322 23556666666677777766666554221
Q ss_pred -----cC----CCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHh
Q 003548 344 -----FE----DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA 406 (811)
Q Consensus 344 -----~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 406 (811)
.. -+.+-+-.+...|...|-+++-+.+++.++-+...... .+..+|.+|.+
T Consensus 1266 rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg------------mfTELaiLYsk 1325 (1666)
T KOG0985|consen 1266 RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG------------MFTELAILYSK 1325 (1666)
T ss_pred hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH------------HHHHHHHHHHh
Confidence 00 12445566788888999999999999888776554332 55666666643
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.77 E-value=0.0065 Score=62.94 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=79.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 152 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 152 (811)
.+..-..+..++..-++.-.+|++++|+.+++|..|+.-. .....+|..+|+++++..... +.........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccch
Confidence 3334444555666666666666666666666666555321 223455666666665533211 1111111111111
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 003548 153 EKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIE 230 (811)
Q Consensus 153 ~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 230 (811)
-+. ....+. ..-+...+|.+..+.|+.++|++.++.+++..|......+..+|..++...+.|.++..++.
T Consensus 247 ~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WEA-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhh-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111 111111 12344567777777777777777777777776654444467777777777777777777766
Q ss_pred HH
Q 003548 231 HA 232 (811)
Q Consensus 231 ~a 232 (811)
+.
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 64
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.002 Score=62.52 Aligned_cols=162 Identities=12% Similarity=-0.038 Sum_probs=130.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHh
Q 003548 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN---GYLYLKLAECYLSL 327 (811)
Q Consensus 251 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 327 (811)
+.+....|++.+|-...++++...|. +.-++...-.+++..|+...-...+++++..-+++. ..+.-.++.++...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 34456678999999999999999885 777777778888999999999999999886534444 55666788889999
Q ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHHHHHhc
Q 003548 328 KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAK 407 (811)
Q Consensus 328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 407 (811)
|-|++|.+.-+++++++|.+.-+...++.++...|++.++.+...+.-+.-... |-+..--+-+.+..+...
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WMLASHNYWHTALFHIEG 260 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHHHhhhhHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999988654433221 212222345678888888
Q ss_pred CCchhHHHhhhHhh
Q 003548 408 GMPEDFVDAIFPLV 421 (811)
Q Consensus 408 g~~~~A~~~~~~~l 421 (811)
+.++.|+++|..-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999997643
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.74 E-value=3.7e-05 Score=48.52 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHh
Q 003548 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369 (811)
Q Consensus 336 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 369 (811)
+|+++++++|+++.+++.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999864
No 239
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.74 E-value=0.0043 Score=64.82 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=73.1
Q ss_pred cchhhcccchHHHHHHHHHHHhhCCCChHH-HHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHhhcCCCchhhHhHH
Q 003548 652 GHQFTMASHHQDAARCYLEAYKLLPENPLI-NLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIA 730 (811)
Q Consensus 652 g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~-~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~yn~g 730 (811)
|-..-..|+...|+..+++|+-+.|....+ .-.||..+++.+| ..+-|..+.|+++.+ ...+=.+|-+|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~---~~da~~~l~q~l~~~-------~sepl~~~~~g 683 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL---HLDATKLLLQALAIN-------SSEPLTFLSLG 683 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh---hccHHHHHHHHHhhc-------ccCchHHHhcc
Confidence 666667899999999999999999987332 3456777777664 334455555555544 34467899999
Q ss_pred HHHHHhchhHHHHHHHHHHHcchhcc
Q 003548 731 RACHHVGLVSLAASYYEKVLAIKEKD 756 (811)
Q Consensus 731 r~~~~~g~~~~Ai~~YekvL~~~~~~ 756 (811)
|++..+...+.|+++++.++...|++
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998875
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.74 E-value=5e-05 Score=77.66 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 003548 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 117 (811)
-.+|+.++..+.|+.|+..|.++|+++|+++..+...+..+.+.+++..|+.-+.++++.+|....+++..|.+....+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34667777778888888888888888888777777777777888888888888888888887777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003548 118 TAQAMYYIRQAIRAEPKDISLRIHLASF 145 (811)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 145 (811)
+.+|...|+......|+++.+...+..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 7777777777777777777765555444
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00032 Score=64.73 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003548 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (811)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 187 (811)
-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+..-..+++++.|+.....+.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35555666678888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 003548 188 RSIGILEEYLKV 199 (811)
Q Consensus 188 ~A~~~~~~~l~~ 199 (811)
+|+..+.++...
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888888654
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.73 E-value=0.098 Score=55.87 Aligned_cols=316 Identities=10% Similarity=0.050 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 003548 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF-YVEIGDYEKAAESYEQI 162 (811)
Q Consensus 84 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~ 162 (811)
.+.+...|...+...|-....|...|..-.+.|..+.+...|++++..-|...+.|...... -...|+.+.-...|+++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 35666777777777888888899999999999999999999999999888887777665433 33567777778888888
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHH-----cccHHHHHHHHHHHH
Q 003548 163 QKLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL-LVAILME-----NNAYEKTLQHIEHAQ 233 (811)
Q Consensus 163 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-l~~~~~~-----~g~~~~A~~~~~~a~ 233 (811)
......+ ...|-.........+++..-...|++.++.-..... .++. .-..... .-..+++...-....
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--RHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 8776554 355666666667777888888888888765322211 1111 1111100 111122211111111
Q ss_pred HH--hccCCCChHHHH-HHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-
Q 003548 234 IV--RFSGKELPLKLK-VKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA- 309 (811)
Q Consensus 234 ~~--~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 309 (811)
.. .+... .+.+.. ...-.+--..+..+++...+.+. ....-.++.......+.+..++..+...
T Consensus 219 ~~~~~~~~~-~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 219 ERSKITHSQ-EPLEELEIGVKDSTDPSKSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred hhhhccccc-ChhHHHHHHHhhccCccchhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 00 00000 000000 00000000001111111111111 1111122333334444555555544331
Q ss_pred ------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCC
Q 003548 310 ------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 383 (811)
Q Consensus 310 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 383 (811)
.+.+...|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+........
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~- 365 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT- 365 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC-
Confidence 1224456777777788899999999999999988888899999999999999999999988887777654432
Q ss_pred CCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 384 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 384 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
+.++..-+.+-...|+++.|...++.+.++.
T Consensus 366 ----------~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 366 ----------PIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred ----------cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 2366677777788899999998888877664
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=4.1e-05 Score=48.81 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=30.2
Q ss_pred chhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 723 QEALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 723 ~e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
++++|++|.+|...|.+..|+++|++++++.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 378999999999999999999999999999986
No 244
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.70 E-value=0.12 Score=57.84 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCHHHHHH
Q 003548 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP-----KDISLRIH 141 (811)
Q Consensus 68 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 141 (811)
.+.+..-+..+...|...+|+.+.-.|- +|.-. ......+.-+...++..- +...++.-| .++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 5667777777778888888887764431 22111 112222333444444332 223333333 34566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---HHHH
Q 003548 142 LASFYVEIGDYEKAAESYEQIQKLFPD--N-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVI 209 (811)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~ 209 (811)
.+.......++.+|..++.++...-+. . .+..-..|.+....|++++|+++.+.++..-|.+.. ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 888888999999999999988775544 1 233445677888899999999999999998776543 2356
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHHHcCCH--HHHHHHHHHhhhc----cccc--HH
Q 003548 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLKVKAGICYLRLGNM--EKAEILFADLQWK----NAID--HA 279 (811)
Q Consensus 210 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~----~~~~--~~ 279 (811)
..++.+..-.|++++|..+...+.+.....+.. ...+....+.++..+|+. .+....+...... .+.. -.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 778999999999999999999887763322222 234445557778888843 3333333332221 1110 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC---HH-
Q 003548 280 DLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGY-LYLKLAECYLSLKERAHAIMFFYKALDRFEDN---ID- 349 (811)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~- 349 (811)
.+...+...+.+ ++.+..-....+.. ..+.... .+..++.++...|++++|...+..+....... +.
T Consensus 581 ~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 581 RIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 223333333333 44444333332222 1122222 22488999999999999999999887764322 11
Q ss_pred -HH--HHHHHHHHHcCCHHHHHhhcCCCCCCC
Q 003548 350 -AR--LTLASLLLEEAKEEEAITLLSPPKDLD 378 (811)
Q Consensus 350 -~~--~~la~~~~~~g~~~~A~~~~~~a~~~~ 378 (811)
+. .........+|+.++|...+.+....+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhccCch
Confidence 11 122234456789998888887654433
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0036 Score=60.45 Aligned_cols=152 Identities=13% Similarity=0.038 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Q 003548 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYV 147 (811)
Q Consensus 69 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 147 (811)
+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+. ..........+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 4455566677789999999999999999999999999999999999999999988887643322221 111112223333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHccc
Q 003548 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~ 221 (811)
+.....+. ..+++-+..+|++.++.+.+|..+...|+.+.|.+.+-..+..+....+..+...+..++...|.
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333322 23455667799999999999999999999999999999998887665554455556666555553
No 246
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.64 E-value=6.5e-05 Score=47.85 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=30.4
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
++++++|.+|.++|.++.|+++|++++++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999999999999999999874
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.64 E-value=0.089 Score=53.72 Aligned_cols=375 Identities=14% Similarity=0.096 Sum_probs=217.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHH
Q 003548 27 KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
-...|.++..++.....+-.+|.+++-.+.+++...-.|-.+.+|...-..-...+++..-...|.+++...- +.+.|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHH
Confidence 3456778888999988888999999999999999888888888887766666667888888888888876442 356665
Q ss_pred HHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCC
Q 003548 107 QLLTFAVQKGD---------TAQAMYYIRQAIRAEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 107 ~la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~ 168 (811)
..-..-.+.+. .-+|-+..-.++-.+|.....|...+..+. ++.+.+.-...|.+++..--+
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 54443333331 223333333333456777777777776554 233456667788888765433
Q ss_pred CH-HHHHHHHHHHHH---------cC----CHHHHHHHHHHHHhh-------CCCC------------CCH---------
Q 003548 169 NV-DATKTGAQLFLK---------CG----QTARSIGILEEYLKV-------HPSD------------ADL--------- 206 (811)
Q Consensus 169 ~~-~~~~~la~~~~~---------~g----~~~~A~~~~~~~l~~-------~p~~------------~~~--------- 206 (811)
+. ..|...-..-.. .| -|-.|...+++.... +|.+ ..|
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 32 122211110000 01 133444444443322 1100 000
Q ss_pred -----------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHc
Q 003548 207 -----------------------------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL 257 (811)
Q Consensus 207 -----------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 257 (811)
.+|+.........++-+.|+....+++.. .+.+...++.++.-.
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-------spsL~~~lse~yel~ 346 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-------SPSLTMFLSEYYELV 346 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-------CCchheeHHHHHhhc
Confidence 12223333334445555555555554433 333666777777776
Q ss_pred CCHHHHHHHHHHhhhc------------------ccccHHH-----------HHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 258 GNMEKAEILFADLQWK------------------NAIDHAD-----------LITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 258 g~~~~A~~~~~~~~~~------------------~~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
.+-+....+|+++... ++...++ ++.-..+...+..-.+.|..+|-++.+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 6666666655553211 0100111 1222233334455567788888777654
Q ss_pred cCCCCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCC
Q 003548 309 AGTDNGYLYLKLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKS 387 (811)
Q Consensus 309 ~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 387 (811)
. -....++..-|.+ +...|++..|-..|+-.+...|+++-.....-..+...++-+.|..+|+.++..-....
T Consensus 427 ~-~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q----- 500 (660)
T COG5107 427 G-IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ----- 500 (660)
T ss_pred C-CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh-----
Confidence 2 2333333333332 44689999999999999999999988877788888899999999999997764332221
Q ss_pred ChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHh
Q 003548 388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (811)
Q Consensus 388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (811)
-.+++-.+..--..-|+...+..+-+++
T Consensus 501 -----~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 501 -----LKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred -----hhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 1124555555555566666665544443
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.62 E-value=0.023 Score=58.25 Aligned_cols=170 Identities=12% Similarity=-0.028 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRA----EPKDISLRIHLASFYVE---IGDYEKAAESYEQ-IQKLFPDNVDATK 174 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~~~ 174 (811)
+....+-.+|....+|+.-+...+.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. +....+.+++++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33444444455555555555555544443 23344445555555555 5555555555555 2233344455555
Q ss_pred HHHHHHHH---------cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH----HHhc----
Q 003548 175 TGAQLFLK---------CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ----IVRF---- 237 (811)
Q Consensus 175 ~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----~~~~---- 237 (811)
.+|.+|-. ....++|+..|.++++.+|+... -.+++.++...|...+....+++.. ...+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~---GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS---GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc---hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 55555432 11245666666666666654332 2344444444443222222222211 1000
Q ss_pred cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc
Q 003548 238 SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (811)
Q Consensus 238 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 275 (811)
.+...+......++.+..-.|++++|...++++....|
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 11223334445555566666666666666666665544
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.60 E-value=0.025 Score=63.05 Aligned_cols=277 Identities=19% Similarity=0.130 Sum_probs=194.7
Q ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC---
Q 003548 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----GDTAQAMYYIRQAIRA-----EPKDISLRIHLASFYVEIG--- 150 (811)
Q Consensus 84 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 150 (811)
...|..+++.+... .+..+...+|.++..- .+.+.|+.+++.+... .-.++.+...+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887765 4677788888888654 6899999999999771 1125567888999998853
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----cc
Q 003548 151 --DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN----NA 221 (811)
Q Consensus 151 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~----g~ 221 (811)
+...|+.+|.++-.. +++.+.+.+|.++.... ++..|.++|..+....- . .+.+.++.+|..- .+
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~--~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--I--LAIYRLALCYELGLGVERN 379 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--h--HHHHHHHHHHHhCCCcCCC
Confidence 778899999999876 46788889999888765 57899999999876542 2 2677788877643 57
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhcccc---cHHHHHHHHHHHHHH----cC
Q 003548 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI---DHADLITEVADTLMS----LG 293 (811)
Q Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~----~g 293 (811)
...|..++.++.+. . .+.+...++.++... +.++.+...+......... .+...+......... ..
T Consensus 380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 89999999999977 3 344444454444333 7777776666554332211 111111111111111 12
Q ss_pred ChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHH
Q 003548 294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL----KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE---AKEEE 366 (811)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~ 366 (811)
+...+...+.++. ...++.+...+|.+|..- .+++.|...|.++.... ....+++|.++..- .....
T Consensus 454 ~~~~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred chhHHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHH
Confidence 5566666666654 456888999999998865 36999999999998876 88999999998652 12688
Q ss_pred HHhhcCCCCCCCcc
Q 003548 367 AITLLSPPKDLDSL 380 (811)
Q Consensus 367 A~~~~~~a~~~~~~ 380 (811)
|.+++.++...+..
T Consensus 528 a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 528 AKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHhcCch
Confidence 99998888776554
No 250
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0013 Score=61.01 Aligned_cols=114 Identities=16% Similarity=0.208 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHH
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 104 (811)
.+..+-+.|+.+|..|+|.+|...|.+++.. .|..++. ++++......
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpL 232 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPL 232 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHH
Confidence 3455678899999999999999999888642 2322211 1111122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 170 (811)
+.+.+.|+...|+|-++++....++..+|.+..+++..|.+....-+..+|..-|.++++++|.-.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 666666777777777777777777777777777777777777777777777777777777666543
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.56 E-value=8e-05 Score=47.00 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=19.8
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCChHHHH
Q 003548 57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAF 88 (811)
Q Consensus 57 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 88 (811)
|+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666654
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.55 E-value=0.033 Score=58.91 Aligned_cols=272 Identities=16% Similarity=0.096 Sum_probs=125.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHccC--------CCCHHHHHHHHHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--------PKDSALWKQLLTF 111 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~ 111 (811)
+.++.+.|+++. +.+.+...+ +.+...+..+......|+++++..+..++...- +......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456788888888 334443333 234666666777778899998888888776532 1111111111111
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 003548 112 AVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHLASFYVEIGDYE--KAAESYEQIQKL----FPDNVDATKTGAQLFL 181 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~----~p~~~~~~~~la~~~~ 181 (811)
+....+.+++..+....... +.. ...|...-... ..+++ +-+-.++..+-. .......+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 12223333333333221110 101 01111111111 11111 111111121111 2234456777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HhccCCCChHHHHHHHHHHHHHcC
Q 003548 182 KCGQTARSIGILEEYLKVHPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQI-VRFSGKELPLKLKVKAGICYLRLG 258 (811)
Q Consensus 182 ~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g 258 (811)
+.|.++.|...+.++....+... .+.+....+.++...|+..+|+..++..+. ................+..+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE---- 233 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence 77777777777777766542221 123555667777777777777777777766 21100000000000000000
Q ss_pred CHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc------CChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003548 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSL------GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (811)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (811)
..+.... .............++..+|...... +..++++..|..+... .|....+|..+|..+..
T Consensus 234 ~~~~~~~--~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 234 SLEVISS--TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccccccc--cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHH
Confidence 0000000 0000000112344555556655555 6677777777777765 66666677666666554
No 253
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.50 E-value=0.31 Score=55.49 Aligned_cols=313 Identities=18% Similarity=0.140 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhhCCC----ChHHHHHHHHHHH-HcCChHHHHHHHHHHHccCCC--CHH----HHHHHHHHHHhcCCH
Q 003548 50 FEQAISLLKEVVRLSPN----LPETYNTLGLAHS-ALGNHKSAFDFYVIAAHLSPK--DSA----LWKQLLTFAVQKGDT 118 (811)
Q Consensus 50 ~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~--~~~----~~~~la~~~~~~g~~ 118 (811)
...|+.+++-+++..+- .+.+++.+|.+++ ...+++.|..++.+++.+... ..+ +...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567777777742221 3557888999888 688999999999999877633 222 344668888888877
Q ss_pred HHHHHHHHHHHHcCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCH
Q 003548 119 AQAMYYIRQAIRAEPK---D-ISLRIHL--ASFYVEIGDYEKAAESYEQIQKLF--PDNVDA----TKTGAQLFLKCGQT 186 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~ 186 (811)
. |...+++.++.... . ....+.+ .......+++..|++.++.+.... +.++.+ ....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999886543 2 1122222 333334489999999999988765 345433 23345666777888
Q ss_pred HHHHHHHHHHHhh------CCCC--CCHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHh---ccCC-------------
Q 003548 187 ARSIGILEEYLKV------HPSD--ADLSVIDLLVA--ILMENNAYEKTLQHIEHAQIVR---FSGK------------- 240 (811)
Q Consensus 187 ~~A~~~~~~~l~~------~p~~--~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a~~~~---~~~~------------- 240 (811)
+++++.++++... +|.. +...++..+.. ++...|+++.+...+++.-... ....
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 8888888877432 2222 11223444433 4456677777776665543321 1000
Q ss_pred ------------CC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc----------cc-----------
Q 003548 241 ------------EL----------PLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----------ID----------- 277 (811)
Q Consensus 241 ------------~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----------~~----------- 277 (811)
+. ..-++..-|......+..++|.+++++++..-. ..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 00 012233445566677777677777766543110 00
Q ss_pred ----HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CC------CCHHHHHHHHHHHHHhccHHHHHHHHH-------
Q 003548 278 ----HADLITEVADTLMSLGHSNSALKYYHFLETNA--GT------DNGYLYLKLAECYLSLKERAHAIMFFY------- 338 (811)
Q Consensus 278 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~------- 338 (811)
...+....+...+-.+++..|...++.+.... .| ..+.+++..|..+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 01134455777788999999999988776431 11 247788999999999999999999998
Q ss_pred -HHHHhcCCC---HHHHHHHHHHHHHcCC
Q 003548 339 -KALDRFEDN---IDARLTLASLLLEEAK 363 (811)
Q Consensus 339 -~al~~~p~~---~~~~~~la~~~~~~g~ 363 (811)
.+....+.+ .-+..++..++...+.
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 333333332 2334556677766665
No 254
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.054 Score=51.28 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHccCCCCHHHHHH
Q 003548 30 LSPGVTKMLGEASLQYA-YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQ 107 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~ 107 (811)
.+.+....+....+.+. ...-..|+.+-..+|..+|.+..+|...-.++..++ +..+-++++...+..+|++-.+|..
T Consensus 38 Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred echhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 34566666665555544 445678999999999999999999988877777654 6778889999999999999999998
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-
Q 003548 108 LLTFAVQKGDTA-QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CG- 184 (811)
Q Consensus 108 la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g- 184 (811)
.-.+....|++. .-++..+.++..+..+..+|...-.+...-+.++.-+.+..++++.+-.+-.+|...-.+... .|
T Consensus 118 Rr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~ 197 (318)
T KOG0530|consen 118 RRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGV 197 (318)
T ss_pred HHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCC
Confidence 888888888888 888999999999999999999999999999999999999999999887776776543322222 12
Q ss_pred ----CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003548 185 ----QTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (811)
Q Consensus 185 ----~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~ 218 (811)
..+.-+.+..+.+...|++.. +|+.|..++..
T Consensus 198 ~~~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l~~ 233 (318)
T KOG0530|consen 198 ISKAELERELNYTKDKILLVPNNES--AWNYLKGLLEL 233 (318)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHh
Confidence 233445677788889999986 78888888775
No 255
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.19 Score=62.09 Aligned_cols=330 Identities=12% Similarity=0.077 Sum_probs=190.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 003548 39 GEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (811)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 114 (811)
..|..-++.+.|..|+-.+++- ...+. ....++.+-.+|...++++.-......- ..+|+ ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHHh
Confidence 5677789999999999999985 22221 1223445555899999999876666531 11222 4455566677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA-QLFLKCGQTARSIGIL 193 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 193 (811)
.|++..|..||+++++.+|+....+...-......|.+...+...+-.....++..+-+..++ .+..+.++++.-..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999998877777777778888888888877776665555544444433 2335555555544432
Q ss_pred H-------------H-HHhhCCCCCCHHHHHHHHHHH----------HHcccHHHHHHHHHHHHHHh------------c
Q 003548 194 E-------------E-YLKVHPSDADLSVIDLLVAIL----------MENNAYEKTLQHIEHAQIVR------------F 237 (811)
Q Consensus 194 ~-------------~-~l~~~p~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~a~~~~------------~ 237 (811)
. + .+.....+.- ..+..+...- ...|.|..+.++.-++.... .
T Consensus 1542 ~~~n~e~w~~~~~g~~ll~~~~kD~~-~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s 1620 (2382)
T KOG0890|consen 1542 SDRNIEYWSVESIGKLLLRNKKKDEI-ATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVS 1620 (2382)
T ss_pred hcccccchhHHHHHHHHHhhcccchh-hHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2 0 0111111110 0000111100 01112223332222221110 0
Q ss_pred c-----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHh---hhcc---cccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 238 S-----GKELPLKLKVKAGICYLRLGNMEKAEILFADL---QWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 238 ~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
. ....++........-+.+ ..+-+-.+++. +..+ .....++|...|++....|+++.|...+-.+.
T Consensus 1621 ~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1621 YDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 0 011222222222222232 23333333332 1112 23467889999999999999999988886666
Q ss_pred hccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCC----------------HHHHHHHHHHHHHcCC--HHHH
Q 003548 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDN----------------IDARLTLASLLLEEAK--EEEA 367 (811)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----------------~~~~~~la~~~~~~g~--~~~A 367 (811)
+. .-+.+....|..+...|+...|+..+++.++.+ |+. ..+.+.++....+.|+ .+.-
T Consensus 1698 e~---r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~i 1774 (2382)
T KOG0890|consen 1698 ES---RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDI 1774 (2382)
T ss_pred hc---ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 44 367888899999999999999999999998653 321 1233344444455555 2345
Q ss_pred HhhcCCCCCCCccc
Q 003548 368 ITLLSPPKDLDSLD 381 (811)
Q Consensus 368 ~~~~~~a~~~~~~~ 381 (811)
+++|..+.+..|..
T Consensus 1775 lk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1775 LKYYHDAKAILPEW 1788 (2382)
T ss_pred HHHHHHHHHHcccc
Confidence 56667777777644
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.42 E-value=0.00028 Score=44.87 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999874
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.41 E-value=0.00026 Score=72.58 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=73.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 153 (811)
.+...+.-+.++.|+..|.++++++|+.+..+...+..+...+++..|+.-+.++++.+|....+++..|.+....+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34455556667777777777777777776666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003548 154 KAAESYEQIQKLFPDNVDATKTGAQL 179 (811)
Q Consensus 154 ~A~~~~~~~l~~~p~~~~~~~~la~~ 179 (811)
+|...|+......|+++.+...+..+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77777777777777776666555544
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.005 Score=62.94 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHH---cCChHHHHHHHHHHhhccCCCCHHHH
Q 003548 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMS---LGHSNSALKYYHFLETNAGTDNGYLY 317 (811)
Q Consensus 244 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 317 (811)
.++...+-.+|....+|+.-+.+.+.+-... ....+.+....|.++.+ .|+.++|+..+..++....+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444445555555566665555555543220 11244445555666665 66666666666664444455666666
Q ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCC----CCCcccCCC
Q 003548 318 LKLAECYLSL---------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK----DLDSLDMNS 384 (811)
Q Consensus 318 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~~~~~~~~ 384 (811)
..+|++|... ...++|+..|.++.+.+|+. -.-.+++.++...|...+...-+++.. ..-......
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 6666666432 23788999999999888643 334556666666665322221111111 000000011
Q ss_pred CCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHhhhh
Q 003548 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (811)
Q Consensus 385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 423 (811)
+....+| ....++.+..-.|++++|.+.++++++-
T Consensus 300 ~~~~dYW----d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYW----DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234567 6677778888899999999999998855
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.37 E-value=0.0002 Score=46.07 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=27.0
Q ss_pred hhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 725 ALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 725 ~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
++.|||++|...|.++.|+++|+++|++.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998877654
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00048 Score=43.76 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999875
No 261
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=63.90 Aligned_cols=108 Identities=20% Similarity=0.137 Sum_probs=94.1
Q ss_pred cccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHH
Q 003548 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (811)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (811)
..|.+.+..+..-|+-|++..+|..|+..|.+.++...++ ++..|.+.|-|....|+|..|+....+++..+|.+..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3444566677788999999999999999999988663332 6778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHhhcCCCCCCCcc
Q 003548 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 380 (811)
+++.-|.++.++.++.+|..+.++.+..+-.
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999988765543
No 262
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0045 Score=57.54 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDI----------SLRIHLASFYVEIGDYEKAAESYEQIQK 164 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 164 (811)
.++..-|.-++..|+|.+|...|..|+. -.|..+ ..+.+.+.++...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999998865 235543 3577889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
..|.+..+++..|.+....=+.++|...|.++++.+|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999987553
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0014 Score=63.71 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 145 (811)
-+-.-|.-|+...+|..|..+|.+++...-.+ ...|.+.|.+....|+|..|+.-..+++..+|.+..+++.-|.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34445666666666666666666666654322 23455666666666777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 003548 146 YVEIGDYEKAAESYEQIQKLFP 167 (811)
Q Consensus 146 ~~~~g~~~~A~~~~~~~l~~~p 167 (811)
+..+.++.+|..+++..+.++.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhH
Confidence 7777777777777766665543
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.24 E-value=0.014 Score=63.37 Aligned_cols=182 Identities=18% Similarity=0.095 Sum_probs=130.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHH----HcccHHHHH
Q 003548 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLL-----VAILM----ENNAYEKTL 226 (811)
Q Consensus 156 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l-----~~~~~----~~g~~~~A~ 226 (811)
.-.|.-++.+-|.. ...+..+.--.|+-+.+++.+.++.+...-......+..+ ..... .....+.|.
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 34566667766633 3344445555789999999998887622111111111111 11111 245678888
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
+.+...... .|...-..+..|.++...|+.++|+..|++++... +.-..-.++.++.++.-..+|++|...+.
T Consensus 254 ~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 254 ELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 888888888 67788888899999999999999999999876422 22244568899999999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHhc
Q 003548 304 FLETNAGTDNGYLYLKLAECYLSLKER-------AHAIMFFYKALDRF 344 (811)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 344 (811)
.+.+...-..+...+..|.|+...|+. ++|.+.+.++-...
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999765555666778889999999998 99999999887653
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.19 E-value=0.32 Score=49.07 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003548 138 LRIHLASFYVEIGDYE---KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 138 ~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 200 (811)
++..++.++...+.++ +|...++.+....|+.+..+...-.+....++.+.+.+.+.+++...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 3455666666555433 34444445555556666666555555555666666666666666543
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.011 Score=53.23 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (811)
...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555544
No 267
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.16 E-value=0.84 Score=53.37 Aligned_cols=371 Identities=11% Similarity=0.048 Sum_probs=211.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHc----C---ChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSAL----G---NHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
-..+.....|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+.-|++. .-.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHH
Confidence 355678889999999999999998874 45777778776642 3 477888888774 446777888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHH---HHH-----
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI-----GDYEKAAESYEQIQKLFPDNVDATK---TGA----- 177 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~---~la----- 177 (811)
+|...|++++-+++|.-+++..|..|..-...-.+-.++ .+-..|....--++...|....... .+-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Confidence 999999999999999999999988875432222111111 1223344444445555554321100 000
Q ss_pred -----------------------HHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 003548 178 -----------------------QLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (811)
Q Consensus 178 -----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 234 (811)
.+-+-.|..---...++++.+..| ..++...-.+....|.++-+.+.......
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD----YRALADIFYVACDLGNWEFFSQFSDILAE 716 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011122332223334444444332 23555666667788988877666555443
Q ss_pred Hhcc-CCCCh--------HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003548 235 VRFS-GKELP--------LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305 (811)
Q Consensus 235 ~~~~-~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 305 (811)
.+.. ..+.. ...+..-..+......++++...+..+- +.....++...+.-....++-+.-....+.+
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (932)
T PRK13184 717 VSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD---PTLILYAFDLFAIQALLDEEGESIIQLLQLI 793 (932)
T ss_pred HhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC---HHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2110 01111 1112222334445557777776555541 1111112222222223333333333333322
Q ss_pred hhcc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCC--c
Q 003548 306 ETNA--GTDNGYLYLKLAECYLSLKERAHAIMFFYKALD--RFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD--S 379 (811)
Q Consensus 306 ~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~ 379 (811)
.... .............+|.-..++++|-+.+..--. ...+...+....|.-+.-.++.+-|...|....+.. |
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (932)
T PRK13184 794 YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP 873 (932)
T ss_pred HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc
Confidence 2221 122334555667778888999999888743211 122456777778888888899999999888766321 1
Q ss_pred ccCC---------CCCCChhhhhHHHHHHHHHHHHhcCCchhHHHhhhHh
Q 003548 380 LDMN---------SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (811)
Q Consensus 380 ~~~~---------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (811)
..-. ..+..+||-....+..+...+.-.|+.++- ..++.+
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 922 (932)
T PRK13184 874 RSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQA 922 (932)
T ss_pred chhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHH
Confidence 1110 124557887777888888888888887776 444444
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.068 Score=47.21 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 003548 286 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (811)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (811)
+.++...|.|++-....+.+....+|-...+.-.||..-.+.|++..|...|.++..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444444444444444444333222333334444444444555555555555544443
No 269
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.014 Score=52.43 Aligned_cols=97 Identities=24% Similarity=0.275 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL----------------------PETYNTLGLAHSALGNHKSAFDFY 91 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~ 91 (811)
...+...|......|+.+.++..+++++...... ..+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3445666777788999999999999999864221 124566778888999999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003548 92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (811)
Q Consensus 92 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 130 (811)
.+++..+|.+..+|..+..++...|+..+|+..|++...
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998755
No 270
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.14 E-value=0.00068 Score=42.66 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=30.3
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
+++|++|+++...|.+..|+.+|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 58999999999999999999999999999875
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.12 E-value=0.37 Score=48.61 Aligned_cols=154 Identities=10% Similarity=0.074 Sum_probs=106.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhC----CCC----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHcc----CC---CC------
Q 003548 44 QYAYGNFEQAISLLKEVVRLS----PNL----PETYNTLGLAHSALG-NHKSAFDFYVIAAHL----SP---KD------ 101 (811)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------ 101 (811)
....|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986543 332 346788888888899 999999999999877 21 11
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 003548 102 -SALWKQLLTFAVQKGDTA---QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATK 174 (811)
Q Consensus 102 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~ 174 (811)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+-.. +...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 235678889998887765 455555566666788888886777777779999999999999998754222 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLK 198 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~ 198 (811)
.....+.. .....|...+...+.
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHH
Confidence 22221222 334556666666554
No 272
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=0.73 Score=51.84 Aligned_cols=301 Identities=13% Similarity=0.043 Sum_probs=177.0
Q ss_pred CCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCC-----CCH
Q 003548 30 LSPGVTKM-LGEASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-----KDS 102 (811)
Q Consensus 30 ~~~~~~~~-~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~~~ 102 (811)
.+++...+ ...+.-+...|...+|+...-.+ .+|.. +......+.-....++..--. ..+..-| +++
T Consensus 342 ~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P 415 (894)
T COG2909 342 LAARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTP 415 (894)
T ss_pred cCCchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCc
Confidence 34443443 44455566788888888765443 23321 122223344444444433322 2222223 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 003548 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--D-------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---- 169 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---- 169 (811)
......+.......++.+|..++.++...-|. . ....-..|.+....|++++|++..+.++..-|.+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 56666777888889999999999988765433 1 2344556788889999999999999999988775
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHhccCCCC
Q 003548 170 -VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAY--EKTLQHIEHAQIVRFSGKEL 242 (811)
Q Consensus 170 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~ 242 (811)
..+...++.+..-.|++++|..+...+.+...... ...+....+.++..+|+. .+....+...-.......+.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 35677889999999999999999988877633222 122345567888888843 33333333333221111222
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHH----hhhcccccHH--HHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC-
Q 003548 243 ---PLKLKVKAGICYLRLGNMEKAEILFAD----LQWKNAIDHA--DLITEVADTLMSLGHSNSALKYYHFLETNAGTD- 312 (811)
Q Consensus 243 ---~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 312 (811)
...++..+..++.+ ++.+..-... .....+.... -.+..++.+.+..|++++|...+..+.......
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 22333344444444 4443333333 2222222122 223488999999999999999988766542222
Q ss_pred -CH--H--HHHHHHHHHHHhccHHHHHHHHHH
Q 003548 313 -NG--Y--LYLKLAECYLSLKERAHAIMFFYK 339 (811)
Q Consensus 313 -~~--~--~~~~la~~~~~~g~~~~A~~~~~~ 339 (811)
.+ . +..........+|+...|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 1 112222334457888888877766
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.07 E-value=0.83 Score=51.72 Aligned_cols=321 Identities=12% Similarity=0.070 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 111 (811)
....|..|...+..|++..+.....++ ..+|- ..|...-.+....+ .+++ +...+...|+.+.........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~e----v~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAVQ----VTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHHH----HHHHHHHCCCCchHHHHHHHH
Confidence 356788999999999999987766653 33442 33333333322323 2333 333344566666544333332
Q ss_pred ---HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003548 112 ---AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (811)
Q Consensus 112 ---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 188 (811)
+...+++..-+.++ ...|.+.......+......|+.++|.....++.......+.....+-..+...|....
T Consensus 106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCH
Confidence 23456666555533 23478888888888889999999888888877766555555555444444444444333
Q ss_pred HHHHHHHHHh-hCCCCCCHHHHHHHHHHH-----------H-HcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 003548 189 SIGILEEYLK-VHPSDADLSVIDLLVAIL-----------M-ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255 (811)
Q Consensus 189 A~~~~~~~l~-~~p~~~~~~~~~~l~~~~-----------~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 255 (811)
... .+++.. ....+.. ....+...+ . -..+...+...+. ..+ ......-...++....
T Consensus 182 ~d~-w~R~~~al~~~~~~--lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~--~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 182 LAY-LERIRLAMKAGNTG--LVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTG--PTDFTRQMAAVAFASV 252 (644)
T ss_pred HHH-HHHHHHHHHCCCHH--HHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccC--CChhhHHHHHHHHHHH
Confidence 221 111111 1111111 111111111 0 0111111111111 100 0111112233344455
Q ss_pred HcCCHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHH
Q 003548 256 RLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 332 (811)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 332 (811)
...+.+.|...+....... +.....++..+|......+...+|...+..+... ..+...+-.........++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 6677788999888753332 2223445566666666654467888888766533 2344445555556668899988
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 333 AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 333 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887775444445678889999999999999999999998743
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.06 E-value=0.001 Score=65.09 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003548 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157 (811)
Q Consensus 78 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 157 (811)
.+..|.+++|++.|..++.++|.....+...+.+++.+++...|+.-+..++.++|+....+-..+.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 33455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhC
Q 003548 158 SYEQIQKLF 166 (811)
Q Consensus 158 ~~~~~l~~~ 166 (811)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 666666554
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.031 Score=50.61 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhccccc--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003548 250 AGICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL 327 (811)
Q Consensus 250 la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 327 (811)
++..+...|++++|...++.++.....+ ..-+-..++.+....|.+++|+..++.... ..-.+......|+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHc
Confidence 3444444444444444444443221111 122334455555555555555555543321 111223334455555555
Q ss_pred ccHHHHHHHHHHHHHhc
Q 003548 328 KERAHAIMFFYKALDRF 344 (811)
Q Consensus 328 g~~~~A~~~~~~al~~~ 344 (811)
|+.++|+..|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 55555555555555554
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.03 E-value=0.32 Score=51.37 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC----H
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----S 102 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~ 102 (811)
...+.+|...+..|+++++...++++...- +......+..-.-+....+.+++..+....... +.. .
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~~~~~~l~ 108 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-PQDLKSLL 108 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-HHHHHHHH
Confidence 567788888899999999999998886531 111111111111222334444555444222111 111 1
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHH
Q 003548 103 ALWKQLLTFAVQKGDTA--QAMYYIRQAIRA----EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD----NVDA 172 (811)
Q Consensus 103 ~~~~~la~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~ 172 (811)
..|...-... ..+++ +-+-.++..+-. .......+...+.+..+.|+++.|...+.++....+. .+.+
T Consensus 109 ~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v 186 (352)
T PF02259_consen 109 KRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRV 186 (352)
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcch
Confidence 1222221111 22222 222223333322 3455678999999999999999999999999886522 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 003548 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG 251 (811)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 251 (811)
....+.+....|+..+|+..++..+..... .........+...... ..+..... ... .........++..+|
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~--~~~~~~~a~~~l~~a 259 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE--SLEVISST---NLD--KESKELKAKAFLLLA 259 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--cccccccc---chh--hhhHHHHHHHHHHHH
Confidence 889999999999999999999999883222 2110011111111000 00000000 000 000112234555666
Q ss_pred HHHHHc------CCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Q 003548 252 ICYLRL------GNMEKAEILFADLQWKNAIDHADLITEVADTLMS 291 (811)
Q Consensus 252 ~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 291 (811)
...... +..+++...|..+....|. ....|...|..+..
T Consensus 260 ~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 260 KWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFNDK 304 (352)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHH
Confidence 666666 8889999999999888774 66677777776643
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.079 Score=48.08 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 86 SAFDFYVIAAHLSPKDSA---LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESY 159 (811)
Q Consensus 86 ~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 159 (811)
+......+....+|.+.. +-..++..+...|++++|+..++.++....+. .-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444544432 34466777888888888888888887643222 234667888888888888888887
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 160 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
....... -.+......|.++...|+-++|...|++++...++..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 7653211 0123345678888888888888888888888775443
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.95 E-value=0.065 Score=55.20 Aligned_cols=134 Identities=11% Similarity=-0.041 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---HcccHHHHHHH
Q 003548 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM---ENNAYEKTLQH 228 (811)
Q Consensus 152 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~ 228 (811)
.+.-+.+|++|++.+|++...+..+..+..+..+.++..+.+++++..+|++.. +|..+..... ..-.++.....
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHH
Confidence 355677888888888888888888888888888888888888888888888764 3433333222 23356777777
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 229 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
|.+++.......... .........++ .....++..+...+.+.|..+.|+..++.+++.
T Consensus 125 y~~~l~~L~~~~~~~--------------~~~~~~~~~~e-------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 125 YEKCLRALSRRRSGR--------------MTSHPDLPELE-------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHhhccc--------------cccccchhhHH-------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 777776522100000 00000000000 124456777788888999999999999988876
No 279
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.31 Score=46.42 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 003548 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-GDTAQAMYYIR 126 (811)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 126 (811)
.+|.++...|+.++..+ ..-..|+..-..++.++|.+-.+|...-.++..+ .+..+-+.++.
T Consensus 40 e~fr~~m~YfRAI~~~~-----------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKN-----------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhcc-----------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666665555444 3455677777788889999988888776666554 46778889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 127 QAIRAEPKDISLRIHLASFYVEIGDYE-KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 127 ~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
.++..+|.+..+|...-.+....|++. .-++..+.++..+..+-.+|...--+....+.++.-+.+...+++.+--+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999888 8888999999988888889988888888888899999999999887655443
Q ss_pred HHHHHHHHHHHHH-cc-----cHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 003548 206 LSVIDLLVAILME-NN-----AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255 (811)
Q Consensus 206 ~~~~~~l~~~~~~-~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 255 (811)
+|+..-.+... .| ..+.-+.+..+.+.. .|.+..+|..+.-++.
T Consensus 183 --AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~----vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 183 --AWNQRYFVITNTKGVISKAELERELNYTKDKILL----VPNNESAWNYLKGLLE 232 (318)
T ss_pred --hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHH
Confidence 34432222111 11 223334455555555 4555555555555444
No 280
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.72 Score=48.29 Aligned_cols=83 Identities=13% Similarity=0.253 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHccCCCCHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQ 107 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~ 107 (811)
+.+.++.-|+.-....-+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 3344555555555545555668888888888888888888888888887777665 888888888888888888888765
Q ss_pred HHHH
Q 003548 108 LLTF 111 (811)
Q Consensus 108 la~~ 111 (811)
.-.+
T Consensus 180 yfrm 183 (568)
T KOG2396|consen 180 YFRM 183 (568)
T ss_pred HHHH
Confidence 5443
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.11 Score=46.01 Aligned_cols=149 Identities=7% Similarity=-0.014 Sum_probs=110.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 003548 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 254 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 254 (811)
.-+.-+...+..++|+..|..+-+..-.....-+....+.+....|+...|+..|..+-...+.+......+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 44555667888999999998887766655554567778889999999999999999887764433334456678888889
Q ss_pred HHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003548 255 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYL 325 (811)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 325 (811)
...|.|++.....+.+-....+-...+...||..-.+.|++..|...|..+.. +...|......+.+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~ml 211 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIML 211 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHH
Confidence 99999999888888765443334667778889999999999999999988874 4445555555555543
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.72 Score=49.98 Aligned_cols=188 Identities=13% Similarity=0.048 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHH----------HHHHHHHHhcCCH
Q 003548 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW----------KQLLTFAVQKGDT 118 (811)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----------~~la~~~~~~g~~ 118 (811)
..++|++. ++.+| ++..|..++......-.++-|...|-+.-... .- ..- ...+.+-.--|++
T Consensus 678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gi-k~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GI-KLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-ch-hHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 34555544 44455 68999999999888888888888887654321 11 111 2234444455788
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
++|...|-.+-.. + .-..++...|+|-...++++..-.-..+ -..++..+|..+.....+++|.++|...
T Consensus 751 eeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 751 EEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888877543221 1 1223455666666655554432111111 1356777777777777777777777653
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 197 LKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269 (811)
Q Consensus 197 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 269 (811)
-. ...++.++....+|++-..+.. . -|.+...+-.+|..+...|.-++|...|-+
T Consensus 823 ~~----------~e~~~ecly~le~f~~LE~la~----~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 823 GD----------TENQIECLYRLELFGELEVLAR----T----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cc----------hHhHHHHHHHHHhhhhHHHHHH----h----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 21 1244455555555444322221 1 133333444455555555555555555443
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.85 E-value=0.096 Score=53.98 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK---CGQTARSIGILEE 195 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~ 195 (811)
+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.+++++..+|+++..|......... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666666666666666666554443332 2234455555555
Q ss_pred HHhhCC----C-------CC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 196 YLKVHP----S-------DA-----DLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 196 ~l~~~p----~-------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
++..-. . .+ ...++..+.......|..+.|+..++..++.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 543210 0 00 0134566777778888888888888888876
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=1 Score=56.26 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=87.7
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC-------
Q 003548 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------- 312 (811)
Q Consensus 240 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------- 312 (811)
.......|...|.+....|+++.|...+-.+.+.. -+.+....|..+...|+-..|+..+++.+....|+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 34556889999999999999999999888876653 56889999999999999999999999988553333
Q ss_pred ---------CHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003548 313 ---------NGYLYLKLAECYLSLKER--AHAIMFFYKALDRFEDNIDARLTLASLL 358 (811)
Q Consensus 313 ---------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~ 358 (811)
...+.+.++......|++ .+-++.|..+.+..|...+.++.+|..|
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 112345555555566663 3457889999999997766777777443
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.81 E-value=0.0029 Score=40.03 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578899999999999999999999999998853
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.56 E-value=0.14 Score=53.47 Aligned_cols=167 Identities=14% Similarity=0.020 Sum_probs=89.2
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---
Q 003548 60 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI--- 136 (811)
Q Consensus 60 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 136 (811)
.++.+|-+.+++..++.++..+|+...|.+++++|+-.........+..-..-...|.- +.--..+.|-
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--------rL~~~~~eNR~ff 103 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--------RLDYRRPENRQFF 103 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--------ccCCccccchHHH
Confidence 34668888888888888888888888888888887532110000000000000000000 0000012221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCC-C----CCCHHHH
Q 003548 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGA-QLFLKCGQTARSIGILEEYLKVHP-S----DADLSVI 209 (811)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p-~----~~~~~~~ 209 (811)
-+.+.....+.+.|-+..|.++.+-++.++|. ||-...... ....+.++++--+..++....... + -+. ..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a 181 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FA 181 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HH
Confidence 23455566666777777777777777777776 554333333 333455666655555555443111 1 122 34
Q ss_pred HHHHHHHHHcccH---------------HHHHHHHHHHHHHh
Q 003548 210 DLLVAILMENNAY---------------EKTLQHIEHAQIVR 236 (811)
Q Consensus 210 ~~l~~~~~~~g~~---------------~~A~~~~~~a~~~~ 236 (811)
+..+.++...++. +.|...+.+++..+
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 4555555556665 77888888888773
No 287
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.55 E-value=0.0028 Score=62.14 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (811)
.|.++.|+..|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+...+.....+|++++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34444555555555555554444444445555555555555555555555544444444444444444455555555444
Q ss_pred HHHhhC
Q 003548 195 EYLKVH 200 (811)
Q Consensus 195 ~~l~~~ 200 (811)
.+.+++
T Consensus 207 ~a~kld 212 (377)
T KOG1308|consen 207 LACKLD 212 (377)
T ss_pred HHHhcc
Confidence 444443
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.45 E-value=0.012 Score=56.56 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 79 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
...|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.||-+++.++|.+.+++.+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345566666666666666666666666666666555556666666666666666666555555443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.41 E-value=0.064 Score=47.47 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
+..++.........++.+++..++..+-...|..++.-..-|.++...|++.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45577778888888899999999888888889999988889999999999999999999888888888888888888888
Q ss_pred hcCCHH
Q 003548 114 QKGDTA 119 (811)
Q Consensus 114 ~~g~~~ 119 (811)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 777754
No 290
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.41 E-value=1.4 Score=45.38 Aligned_cols=216 Identities=13% Similarity=0.070 Sum_probs=138.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc-
Q 003548 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF- 237 (811)
Q Consensus 159 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~- 237 (811)
+++++...|-.+++|+.........++-+.|+...++.+...|. ....++..|....+-+....+|+++.+...
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 34444444455566777777777888888999888888776665 345677777777777766666666544210
Q ss_pred ------------c-CCC-ChHHHH-----------HHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHH-HHH
Q 003548 238 ------------S-GKE-LPLKLK-----------VKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT-LMS 291 (811)
Q Consensus 238 ------------~-~~~-~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~~~ 291 (811)
. +.+ ...+.. ..+...-.+..-.+.|..+|.++-+..- ...+++..-|.+ +..
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHh
Confidence 0 011 011111 1122222344556778888888755432 233444333333 457
Q ss_pred cCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHh
Q 003548 292 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN--IDARLTLASLLLEEAKEEEAIT 369 (811)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 369 (811)
.|++.-|..+|+--+.. .|+++..-...-..+...++-+.|...|+++++.-.+. ..+|-.+...-..-|+...+..
T Consensus 445 ~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 445 TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 89999999999987755 77777776777777888999999999999888764433 4555556666666777777776
Q ss_pred hcCCCCCCCccc
Q 003548 370 LLSPPKDLDSLD 381 (811)
Q Consensus 370 ~~~~a~~~~~~~ 381 (811)
+-++.....|..
T Consensus 524 Le~rf~e~~pQe 535 (660)
T COG5107 524 LEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHcCcH
Confidence 666666666653
No 291
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.02 Score=59.31 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHccCCCCHHH
Q 003548 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---GNHKSAFDFYVIAAHLSPKDSAL 104 (811)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~ 104 (811)
-.+++.+...+..|+-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....++.++|....+
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 467888888999999999999999999999999999999888888888887764 56667777778888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 136 (811)
|+.|+.++...+++.+|+.+...+....|.+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 88888888888888888888877777777543
No 292
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.38 E-value=2.5 Score=47.92 Aligned_cols=268 Identities=11% Similarity=0.069 Sum_probs=150.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003548 56 LLKEVVRLSPNLPETYNTLGLAHSA---LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (811)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 132 (811)
.+...++.+|+.|..-......... .+++..-+.++ ...|.+......++......|+.++|.....++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 5556677788877665555544433 44555544422 2347888888888888999999888888777776554
Q ss_pred CCCHHHHHHHHH------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 003548 133 PKDISLRIHLAS------------------FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL 193 (811)
Q Consensus 133 p~~~~~~~~la~------------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 193 (811)
...+.....+-. .....|+...|......+ +.+... ++..... ..+...+...
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~- 231 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETF- 231 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHH-
Confidence 433444333333 334444444443333322 111111 1111111 1122222211
Q ss_pred HHHHhhC-CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003548 194 EEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (811)
Q Consensus 194 ~~~l~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 272 (811)
+... |+... .....++..-....+.+.|...+.+......-+.+....++..++.-....+...+|...+..+..
T Consensus 232 ---~~~~~~~~~~-~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~ 307 (644)
T PRK11619 232 ---ARTTGPTDFT-RQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM 307 (644)
T ss_pred ---hhccCCChhh-HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 1111 22111 122233444445677788988888765442211122234444555444444336778888877654
Q ss_pred cccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 003548 273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (811)
Q Consensus 273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (811)
... +.........+....++++.+...+..+-.. ....+...+.+|+.+...|+.++|...|+++..
T Consensus 308 ~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 308 RSQ--STSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 322 2233333444555889999888888876543 446778889999999999999999999999854
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.32 E-value=0.009 Score=37.37 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888999999999999999999999888864
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.21 E-value=0.23 Score=51.81 Aligned_cols=173 Identities=11% Similarity=0.010 Sum_probs=103.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHhccC
Q 003548 162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI--LMENNAYEKTLQHIEHAQIVRFSG 239 (811)
Q Consensus 162 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~a~~~~~~~ 239 (811)
.+..+|-+.+++..++.++..+|+.+.|.+.+++++-....... ...... -...|. +.--|.. ..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~----~~F~~~~~~~~~g~---~rL~~~~------~e 98 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH----PSFSPFRSNLTSGN---CRLDYRR------PE 98 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HHhhhhhcccccCc---cccCCcc------cc
Confidence 34556777777777777777777777777777776532110000 000000 000000 0000000 00
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHH-HHHHHHHHHHHHcCChHHHHHHHHHHhhccCC----CCH
Q 003548 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-DLITEVADTLMSLGHSNSALKYYHFLETNAGT----DNG 314 (811)
Q Consensus 240 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 314 (811)
+..-..+.+.....+.+.|-+..|.++.+-++..+|..++ .+.+.+-....+.++|+--+++++........ .-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 1122345566677788889999999999998888887444 44555555557778888777777765532111 134
Q ss_pred HHHHHHHHHHHHhccH---------------HHHHHHHHHHHHhcCCC
Q 003548 315 YLYLKLAECYLSLKER---------------AHAIMFFYKALDRFEDN 347 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 347 (811)
...+..+.++...++. +.|...+.+|+...|.-
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 5667778888888887 89999999999888753
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.19 E-value=0.06 Score=44.05 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=68.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 116 (811)
+|..++..|++-+|+++.+..+..++++.. .+...|.++..+ +......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence 467889999999999999999998887664 444555555432 222221222222222
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003548 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (811)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 165 (811)
.+++++.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3667777777777777777777777776677777777777777654
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.18 E-value=1.8 Score=44.20 Aligned_cols=167 Identities=17% Similarity=0.088 Sum_probs=99.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----
Q 003548 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL----GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ---- 114 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 114 (811)
.....+++..|...+..+-.. .++.....++.+|... .+..+|..+|..+.. ..++.+.+.+|.++..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCc
Confidence 334566777777777776552 2336667777776652 356677777775443 3456677777777766
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003548 115 KGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG-------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK---- 182 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---- 182 (811)
..+..+|..+|.++.+..-.. ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 347777777777777754222 233666666665531 2235666666665553 56666666666644
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcc
Q 003548 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220 (811)
Q Consensus 183 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g 220 (811)
..++.+|..+|.++.+... . ...+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~--~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--G--AACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--H--HHHHHHH-HHHhcC
Confidence 2356677777777666554 1 2455555 444444
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.16 E-value=0.56 Score=44.73 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=39.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003548 46 AYGNFEQAISLLKEVVRLSPNLPE----TYNTLGLAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~ 96 (811)
...+.++|+..|+++++..|...+ ++-.+..+++.+|++++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 455788999999999988877543 566777888888888888888877654
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.15 E-value=1.8 Score=44.10 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=113.1
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----c
Q 003548 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----I 149 (811)
Q Consensus 78 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 149 (811)
....+++..|...+..+... .++.....++.++... .+..+|..+|..+.+ ..++.+.+.+|.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcc
Confidence 34567888888888887663 3346777788877654 457888888885543 5677888889988887 4
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---
Q 003548 150 GDYEKAAESYEQIQKLFPDN-VDATKTGAQLFLKCG-------QTARSIGILEEYLKVHPSDADLSVIDLLVAILME--- 218 (811)
Q Consensus 150 g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~--- 218 (811)
.+..+|..+|.++....-.. ..+...++.+|..-. +...|...|.++.... ++ .+...+|.+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHHHHcCCC
Confidence 58899999999988764333 233777777776642 2236777777776655 22 256677776654
Q ss_pred -cccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcC
Q 003548 219 -NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (811)
Q Consensus 219 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 258 (811)
..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~----g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQ----GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHC----CC--HHHHHHHH-HHHhcC
Confidence 34778888888888766 22 66666666 555554
No 299
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.13 E-value=2.2 Score=44.83 Aligned_cols=88 Identities=9% Similarity=0.061 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 003548 54 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIRAE 132 (811)
Q Consensus 54 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 132 (811)
..+|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4566777777888899999888888888889999999999999999999999999888877766 899999999999999
Q ss_pred CCCHHHHHH
Q 003548 133 PKDISLRIH 141 (811)
Q Consensus 133 p~~~~~~~~ 141 (811)
|+++..|..
T Consensus 171 pdsp~Lw~e 179 (568)
T KOG2396|consen 171 PDSPKLWKE 179 (568)
T ss_pred CCChHHHHH
Confidence 998876543
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.89 E-value=0.11 Score=41.58 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHccc
Q 003548 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221 (811)
Q Consensus 156 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~ 221 (811)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++..+-.+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344556666666666666666666666666666666666666666555332233334444433333
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.80 E-value=0.02 Score=36.68 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 003548 316 LYLKLAECYLSLKERAHAIMFFYKALDR 343 (811)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (811)
++..+|.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 302
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=2 Score=41.52 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=140.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 38 LGEASLQYAYGNFEQAISLLKEVVRLSPN--------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
+..|+.....+++++|+..|.+++..... ...+...++.+|...|++..-.+..... .++|...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence 67888999999999999999999976221 2346778899999999887654443221 22222211
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 189 (811)
. .+.....+..++..|..++.+-....+....=.| |..-=+..++ ...-..++.++++.|.|.+|
T Consensus 80 k--------~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iew--A~rEkr~fLr-----~~Le~Kli~l~y~~~~Ysda 144 (421)
T COG5159 80 K--------PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEW--ADREKRKFLR-----LELECKLIYLLYKTGKYSDA 144 (421)
T ss_pred c--------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHhcccHHHH
Confidence 1 1122333444444443322211111111000000 0000011111 12223456666777777777
Q ss_pred HHHHHHHHhh----CCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHh-ccCCCCh--HHHHHHHHHHHHHcCCHHH
Q 003548 190 IGILEEYLKV----HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR-FSGKELP--LKLKVKAGICYLRLGNMEK 262 (811)
Q Consensus 190 ~~~~~~~l~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~ 262 (811)
+......+.. +..-.-..++..-..+|....+..++...+..+.... ..-.|.. ..+-..-|..++...+|..
T Consensus 145 lalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dykt 224 (421)
T COG5159 145 LALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKT 224 (421)
T ss_pred HHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchh
Confidence 7665554431 1111111234455666666666666666655543321 1112222 2333444666666677777
Q ss_pred HHHHHHHhhhcccc--cHHHH-----HHHHHHHHHHcCChHHHHHHHHH--HhhccCCCCHHHHHHHHHHHH--HhccHH
Q 003548 263 AEILFADLQWKNAI--DHADL-----ITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYL--SLKERA 331 (811)
Q Consensus 263 A~~~~~~~~~~~~~--~~~~~-----~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~--~~g~~~ 331 (811)
|..+|-++.+.... .+..+ |..+..+ ..+..++.-..+.. .++.-......+....+.++. .+.+|.
T Consensus 225 A~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkI--MlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~ 302 (421)
T COG5159 225 ASSYFIEALEGFTLLKMDVKACVSLKYMLLSKI--MLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFS 302 (421)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHH--HHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHH
Confidence 77777666553321 12222 2222222 22333333333321 222113345556666666654 356799
Q ss_pred HHHHHHHHHHHhcC
Q 003548 332 HAIMFFYKALDRFE 345 (811)
Q Consensus 332 ~A~~~~~~al~~~p 345 (811)
.|+..|..-+..+|
T Consensus 303 ~aL~qY~~el~~D~ 316 (421)
T COG5159 303 DALAQYSDELHQDS 316 (421)
T ss_pred HHHHHhhHHhccCH
Confidence 99999998776555
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.67 E-value=0.018 Score=35.52 Aligned_cols=32 Identities=41% Similarity=0.608 Sum_probs=29.5
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
.+++++|.++...|.+..|+.+|++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999988763
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.66 E-value=0.16 Score=40.69 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCC
Q 003548 54 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGD 117 (811)
Q Consensus 54 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~ 117 (811)
+..+++.+..+|++..+.+.+|..+...|++++|++.+..++..+++. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445666666777777777777777777777777777777777666543 3444444444444444
No 305
>PRK10941 hypothetical protein; Provisional
Probab=95.62 E-value=0.12 Score=51.00 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH
Q 003548 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206 (811)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 206 (811)
.+.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 355667788888899999999999999999888888888888999999999998888888888888864
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.56 E-value=3.6 Score=42.81 Aligned_cols=129 Identities=11% Similarity=-0.015 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-----HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-----TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 111 (811)
+..+|..+-.++++.+|..+|.++.+...+.+. .+..+..-.+-+++.+.-...+...-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 456788888999999999999998876544432 333333333446677766666666666778777777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003548 112 AVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (811)
Q Consensus 112 ~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 165 (811)
.++.+++.+|+..+......-... ...-...|.++...|.+.++...+++++..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 889999999988887665431111 111223567788888888888888887754
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.55 E-value=0.046 Score=52.78 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 179 (811)
..+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444556789999999999999999999999999999999999999999999999999999999988777654
No 308
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=1.2 Score=47.29 Aligned_cols=64 Identities=22% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHcCC-HHHHHhhcCCCCCCCcc
Q 003548 317 YLKLAECYLSLKERAHAIMFFYKALDRF---ED----NIDARLTLASLLLEEAK-EEEAITLLSPPKDLDSL 380 (811)
Q Consensus 317 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~ 380 (811)
++.+|.++..+|+...|..+|..+++.. .. -|-+++.+|.++..+|. ..++..++.+|.+...+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 3445666666666666666666555321 11 25566666666666666 66666666666555433
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.54 E-value=0.071 Score=37.44 Aligned_cols=43 Identities=21% Similarity=0.023 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (811)
+.++.+|..+.++|+|++|..+.+.+++.+|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888889999999999999999999999998876654443
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.52 E-value=0.14 Score=42.02 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALW---KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 150 (811)
++.-++..|++-+|++..+..+...+++...| ..-|.+ +++.+...+..+....+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~i------------f~~lA~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTI------------FYKLAKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHH------------HHHHHHhccCchHHHHHH---------
Confidence 35566777888888888888777776665443 222333 223333333223333332
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
-.+++.|.++..+.|..+..++.+|.-+.....|+++....++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999888888899999999998875
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.49 E-value=0.23 Score=43.09 Aligned_cols=85 Identities=19% Similarity=0.046 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
+..++.........++.+++..++..+--..|+.++.-..-|.++...|++.+|+..++......+..+..--.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34466667777778999999999888888889999998899999999999999999998888877777777777777777
Q ss_pred hcCCH
Q 003548 114 QKGDT 118 (811)
Q Consensus 114 ~~g~~ 118 (811)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 77764
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.42 E-value=0.3 Score=43.31 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003548 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (811)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 185 (811)
..+..+-...++.+++...+..+--+.|..+..-..-|.++...|++.+|+.+|+.+....|..+.+--.++.|+...|+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33344444455555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred H
Q 003548 186 T 186 (811)
Q Consensus 186 ~ 186 (811)
.
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 3
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.40 E-value=1.6 Score=41.71 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=92.3
Q ss_pred cCChHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCH-HHHHHHHHHHHHcC
Q 003548 81 LGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-----PKDI-SLRIHLASFYVEIG 150 (811)
Q Consensus 81 ~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~g 150 (811)
..++++|+..|.+++++.|.-. .++..+..+.+.+|++++-...|.+.+..- .+.. .....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4478888889998888876543 345566778888888888888877766411 1111 11111111111222
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----------CHHHHHHHHH
Q 003548 151 DYEKAAESYEQIQKL--FPDNVDA----TKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----------DLSVIDLLVA 214 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~--~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~~l~~ 214 (811)
+.+--.+.|+..+.. +..+... -..+|.+|+..|.|.+-.+.+++.-....... -..++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 222222333322221 1112222 23567777777666665555555433211110 0122333345
Q ss_pred HHHHcccHHHHHHHHHHHHHHhccCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003548 215 ILMENNAYEKTLQHIEHAQIVRFSGKELPL---KLKVKAGICYLRLGNMEKAEILFADL 270 (811)
Q Consensus 215 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~ 270 (811)
+|..+.+-.+-..+|++++.+ ...-|.+. .+.-.-|..+.+.|++++|-..|-++
T Consensus 200 mYT~qKnNKkLK~lYeqalhi-KSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHI-KSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHh-hccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 555556655566666666654 11122221 12222344455566666665554444
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.39 E-value=0.18 Score=51.90 Aligned_cols=126 Identities=15% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003548 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (811)
.....|+.-.|-..+..+++..|..|......+.+...+|+|+.|...+.-+-..-.....+...+-......|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34556666666666666666666666666666666667777776666654443332233333444445555566666666
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 123 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
....-++...-.+++....-+.....+|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666655554455555544455555556666666666666666554
No 315
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.38 E-value=0.71 Score=38.11 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHc-------c
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPN------------LPETYNTLGLAHSALGNHKSAFDFYVIAAH-------L 97 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~ 97 (811)
.+..|...+..|-|++|...++++...... ++-++..|+..+..+|+|++++..-.+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 456777788888999999998888775321 344667777888888888877766655553 2
Q ss_pred CCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 003548 98 SPKDSALWK----QLLTFAVQKGDTAQAMYYIRQA 128 (811)
Q Consensus 98 ~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~a 128 (811)
+.+....|. ..+..+...|+.++|+..|+.+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333333332 3344444455555555555444
No 316
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=3.4 Score=41.16 Aligned_cols=291 Identities=14% Similarity=0.066 Sum_probs=157.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRL--SPNL--------PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
.+..+.......++++++..+..++.. .|.+ ......+|..+...|+..+-.......- ..|.
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R-------pf~~ 79 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR-------PFLS 79 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-------HHHH
Confidence 377788888888999999999999874 2221 2356788899999998887665554432 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 003548 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLF 180 (811)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~ 180 (811)
..+. .+|....+..++..+..++.. ..-+..+..+++..... ...-..++.+|
T Consensus 80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~-------------~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly 138 (411)
T KOG1463|consen 80 SVSK--------AKAAKLVRSLVDMFLKIDDGT-------------GDQIELCTECIEWAKREKRTFLRQSLEARLIRLY 138 (411)
T ss_pred Hhhh--------HHHHHHHHHHHHHHccCCCCc-------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2211 123333333333322111110 01111111111111000 11223566777
Q ss_pred HHcCCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc-c--CCCChHHHHHHHHHH
Q 003548 181 LKCGQTARSIGILEEYLK----VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF-S--GKELPLKLKVKAGIC 253 (811)
Q Consensus 181 ~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~--~~~~~~~~~~~la~~ 253 (811)
...++|.+|+......+. .+....-..++..-...|....+..+|...+..+..... . ++.....+-..-|..
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 777777777766655543 222222122344556667777777777776665543210 0 022233334445666
Q ss_pred HHHcCCHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHHHHcCChHHHHHHHH--HHhhccCCCCHHHHHHHHHHHHH
Q 003548 254 YLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYH--FLETNAGTDNGYLYLKLAECYLS 326 (811)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~la~~~~~ 326 (811)
+....+|..|..+|-++.+.... .....+..+-.+-...+..++--.++. .+++. ...+..+...++.++..
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y-~g~~i~AmkavAeA~~n 297 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY-AGRDIDAMKAVAEAFGN 297 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc-cCcchHHHHHHHHHhcC
Confidence 66667788887777777654321 112223333334445566665555444 23432 55677788888887764
Q ss_pred --hccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003548 327 --LKERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (811)
Q Consensus 327 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (811)
+.+|+.|+..|..=+..+| -+...+..+|-
T Consensus 298 RSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 298 RSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred CcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 5789999999998877655 44555555543
No 317
>PRK10941 hypothetical protein; Provisional
Probab=95.22 E-value=0.24 Score=48.95 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
..++-.+|.+.++++.|+.+.+.++...|+++. -+...|.+|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445556677777777777777777777777764 4666777777777777777777777776
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.10 E-value=1.1 Score=48.14 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCHHHHHHH
Q 003548 141 HLASFYVEIGDYEKAAESYEQIQ------KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK--VHPSDADLSVIDLL 212 (811)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~l------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~l 212 (811)
.+|.++.-.|++.+|.+.|.+.= ++.. .--.+.++.-+...|..++-..+.++--+ .+-..+. .-
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT--DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aA 709 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT--DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AA 709 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HH
Confidence 45666666667777766665431 1110 01133456666666666665555544322 2222232 35
Q ss_pred HHHHHHcccHHHHHHHHHH------HHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHH
Q 003548 213 VAILMENNAYEKTLQHIEH------AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVA 286 (811)
Q Consensus 213 ~~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la 286 (811)
++++...|+..+|+...-. ++++...-+....+....++..+.++..+.-|.++|.++-. ...+.
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 6777778888888765422 22221111233344555566666677777777777776521 12345
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 003548 287 DTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE 366 (811)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 366 (811)
....+.+++.+|..+-++.- .-.+.+++-.|+.+.+..++++|.+.|.++ |+..|
T Consensus 781 qlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA---------------------Gr~~E 835 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWLAENDRFEEAQKAFHKA---------------------GRQRE 835 (1081)
T ss_pred hheeecccchHhHhhhhhCc----cccccccchHHHHhhhhhhHHHHHHHHHHh---------------------cchHH
Confidence 66778889999987764432 225567888888888889999988777654 66666
Q ss_pred HHhhcCCCCC
Q 003548 367 AITLLSPPKD 376 (811)
Q Consensus 367 A~~~~~~a~~ 376 (811)
|...+++.-+
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 6666665443
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.05 E-value=0.24 Score=51.10 Aligned_cols=127 Identities=13% Similarity=-0.014 Sum_probs=101.8
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003548 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157 (811)
Q Consensus 78 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 157 (811)
.+..|+.-.|-.-...++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34578888888888888888899988888889999999999999888876655444444566667777888899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 003548 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (811)
Q Consensus 158 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 204 (811)
.-.-++...-+++++...-+.....+|-++++...+++.+.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888877777788777777777778889999999999988876543
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.71 E-value=0.55 Score=43.41 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCC--hHHHH
Q 003548 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLK 247 (811)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~ 247 (811)
.++..+|..|.+.|+.++|++.|.++.+....... ...+..+..+.+..+++......+.++........+. ...+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777777778888887777776664332211 2345667777777778877777777776653221111 11233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhc
Q 003548 248 VKAGICYLRLGNMEKAEILFADLQWK 273 (811)
Q Consensus 248 ~~la~~~~~~g~~~~A~~~~~~~~~~ 273 (811)
...|..++..++|.+|-..|-.+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 44456666677777777777665443
No 321
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.65 E-value=0.71 Score=39.21 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHH
Q 003548 278 HADLITEVADTLMSLG---HSNSALKYYHFLETNAGT-DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 278 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (811)
.....+++++++.... +..+.+.+++.+.+..+| ..-...+.++..+.+.++|+.++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5566777888887655 445677788887753233 355677788888888889999999988888888888877654
Q ss_pred HHHH
Q 003548 354 LASL 357 (811)
Q Consensus 354 la~~ 357 (811)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4333
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.60 E-value=0.2 Score=35.20 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444444444444444444444444433
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.60 E-value=0.062 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (811)
.++..+|.++...|++++|+..++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877765
No 324
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.36 E-value=0.43 Score=56.03 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccC------
Q 003548 32 PGVTKMLGEASLQYAYGNFEQAIS------LLKEV-VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS------ 98 (811)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------ 98 (811)
.+....+..+......|.+.+|.+ ++... -...|+.+..+..++.++...|+.++|+..-.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 466677888888888999998888 55533 33578888999999999999999999999888776543
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 99 --PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 99 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
|+....+..++......++...|...+.++... .|.-.....++..++...++++.|+.+++.++.....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777777777777777777653 2333444556666666777777777777777664211
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003548 169 --------NVDATKTGAQLFLKCGQTARSIGILEE 195 (811)
Q Consensus 169 --------~~~~~~~la~~~~~~g~~~~A~~~~~~ 195 (811)
....+..+++++...+++..|....+.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 123344445555555555554444433
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.35 E-value=8.3 Score=40.84 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
.|-+...+..+..++...-.+.-....+.+++... .+..+++.++.+|... ..++-...++++.+.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34455555666666665555666666667776654 3455677777777777 456666777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 003548 178 QLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
..|.. ++.+.+...|.+++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH
Confidence 76666 6777777777777654
No 326
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=9.2 Score=40.98 Aligned_cols=222 Identities=14% Similarity=0.002 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----VDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
..+.+.......|+++......+.++...|+.+.|+..++..+. +.- .-.++.+|.++.-..+|..|...+...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444455677776667777777777776666666666655 111 123455666666666777777776666
Q ss_pred HhhCCCCCCHHHHHHHH-HHHHH--------cccHHHHHHHHHHHHHHh---ccCCCChH--------------------
Q 003548 197 LKVHPSDADLSVIDLLV-AILME--------NNAYEKTLQHIEHAQIVR---FSGKELPL-------------------- 244 (811)
Q Consensus 197 l~~~p~~~~~~~~~~l~-~~~~~--------~g~~~~A~~~~~~a~~~~---~~~~~~~~-------------------- 244 (811)
.+.+.-+.. .|..++ -+++. .|+-++|..+++...... |.+.|...
T Consensus 330 ~desdWS~a--~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 330 RDESDWSHA--FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HhhhhhhHH--HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 555432221 122222 22211 223344433333322211 11111000
Q ss_pred H--HHHHHHHHHHH--cCCHHHHH---HHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc------CC
Q 003548 245 K--LKVKAGICYLR--LGNMEKAE---ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA------GT 311 (811)
Q Consensus 245 ~--~~~~la~~~~~--~g~~~~A~---~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~ 311 (811)
. -++.++..+-. ....++.. ..++.-.-.++.+..-.+..+|.++...|+...|..+|....+.. .-
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 0 11222222211 11222222 111111111232233446778999999999999999998776431 12
Q ss_pred CCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhcCC
Q 003548 312 DNGYLYLKLAECYLSLKE-RAHAIMFFYKALDRFED 346 (811)
Q Consensus 312 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 346 (811)
-.|.+++.+|..+..+|. ..++..++.+|-+...+
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 257899999999999998 99999999999877644
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.8 Score=46.51 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Q 003548 53 AISLLKEVVRLSPNLPETYNT--LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ-AI 129 (811)
Q Consensus 53 A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 129 (811)
++..+..-+..+|.++..+.. +...+...++...+...+...+..+|.+..+..+|+......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555544222 244444555555555566666666666666666665555555444444443333 55
Q ss_pred HcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 130 RAEPKDISLRIHL------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 130 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
...|.+......+ +......|+..++...++++....|.++.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 5555554443333 55555555566666666666666555544443333
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.15 E-value=0.22 Score=46.04 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhh
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED---NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW 391 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 391 (811)
.++..+|..|.+.|+.++|++.|.++.+.... -.+.++.+..+....|++.....++.++....... ..|-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~------~d~~ 110 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG------GDWE 110 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc------chHH
Confidence 45566666677777777777777666554322 24555666666666677666666666554433221 1233
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHhhhHhhhh
Q 003548 392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (811)
Q Consensus 392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 423 (811)
...++...-|..+...|+|.+|.+.|...+..
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 33445556666777788888888888665543
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.87 E-value=0.98 Score=43.16 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 208 VIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 208 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
++..+|.+|...|+.+....++++|+..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~ 147 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEF 147 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 4556677777777755555555555443
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.86 E-value=18 Score=42.85 Aligned_cols=98 Identities=18% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQK----G---DTAQAMYYIRQAIRAEPKDISLRIHLA 143 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 143 (811)
...++.....|+.|+..|++.....|.- .++.+..|.....+ | .+++|+..|++.-. .|.-|--+...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456677788999999999998888764 35667777666543 3 47778777777543 466677788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003548 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDA 172 (811)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 172 (811)
.+|..+|++++-+++|.-+++..|..|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999988754
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.83 E-value=1.4 Score=42.21 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHHHcCCHH
Q 003548 220 NAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNME 261 (811)
Q Consensus 220 g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~ 261 (811)
..+++|+..|.-++-... ........++..+|.+|...|+.+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~ 135 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEE 135 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHH
Confidence 355666666665543321 111122345555666666666643
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.81 E-value=2.2 Score=45.95 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHcCCHHHHHHHHH--HHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 43 LQYAYGNFEQAISLLK--EVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
.....|+++++..+.. +.+..-| ..-...++..+.++|-++.|+.+. .|+...+.| ..+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence 4556788888776664 2221122 334556666677777777776553 344444443 456777777
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 200 (811)
|.+..+ ..+++..|..+|.....+|+++-|.++|+++- + +..+..+|...|+.+.-.+..+.+....
T Consensus 337 A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK-----D---FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----C---ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 766543 23466778888888888888888887777652 2 2345556666777655444444443322
Q ss_pred CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003548 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 201 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 232 (811)
. ++..-.+++..|+.++.++.+.+.
T Consensus 404 ~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 223333444556666666665543
No 333
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.70 E-value=7.2 Score=42.37 Aligned_cols=56 Identities=18% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVVRL--------------SPNLPETYNTLGLAHSALGNHKSAFDFYVI 93 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 93 (811)
|-..|+..+..=+++-|.+.|.++-.. ....| --..++.++.-.|++.+|...|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455566666666777777776655321 11111 123455556666677777666654
No 334
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=3.2 Score=44.71 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHccCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003548 82 GNHKSAFDFYVIAAHLSPKDSALWKQL--LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159 (811)
Q Consensus 82 g~~~~A~~~~~~a~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 159 (811)
|...-++..+...+.++|.++..+... ...+...+....+......++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 444446677777777888888774443 666677788888899999999999999999999999888888777777666
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 003548 160 EQ-IQKLFPDNVDATKTG------AQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 160 ~~-~l~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 205 (811)
.. +....|.+......+ +......|+..++...++++....|.++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 65 777888887655544 88888889999999999999999888864
No 335
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.58 E-value=1.7 Score=37.01 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHHcCC---HHHHHHHHHHhhh-cccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHH
Q 003548 241 ELPLKLKVKAGICYLRLGN---MEKAEILFADLQW-KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 316 (811)
Q Consensus 241 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 316 (811)
.......++++.++.+..+ ..+.+.+++.+++ ..|...-+..+.++..+.+.++|+.++.+.+.+++. .|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-EPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-CCCcHHH
Confidence 4456777888888887654 5678889999886 667777888999999999999999999999999977 7777766
Q ss_pred HHH
Q 003548 317 YLK 319 (811)
Q Consensus 317 ~~~ 319 (811)
...
T Consensus 108 ~~L 110 (149)
T KOG3364|consen 108 LEL 110 (149)
T ss_pred HHH
Confidence 543
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.41 E-value=0.1 Score=34.60 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=27.1
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHHHHcchhc
Q 003548 724 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 755 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~ 755 (811)
.+..|+|.+|...|.+..|..+|++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 46789999999999999999999999988643
No 337
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.40 E-value=0.13 Score=47.74 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=39.9
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 003548 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (811)
Q Consensus 78 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 136 (811)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34456666666777777777777666677777777777777777777777777766553
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=9.1 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHhh------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003548 47 YGNFEQAISLLKEVVRL------------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95 (811)
Q Consensus 47 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 95 (811)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|.....+++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45677888888776654 35556677777777777777776666665554
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.30 E-value=1.2 Score=38.91 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003548 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 184 (811)
.++.+++...+..+--+.|+.+..-..-|.++...|++.+|+..|+.+.+..+..+-..-.++.|+.-+|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 4445555544444444445555555555555555555555555555554444444433334444444333
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.93 E-value=0.17 Score=46.99 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 170 (811)
......++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455678889999999999999999999999999999999999999999999999998874
No 341
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.85 E-value=1.9 Score=44.11 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------Ch----------HHHHHHHHHHHHcCChHHH
Q 003548 30 LSPGVTKM----LGEASLQYAYGNFEQAISLLKEVVRLSPN--------LP----------ETYNTLGLAHSALGNHKSA 87 (811)
Q Consensus 30 ~~~~~~~~----~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~----------~~~~~la~~~~~~g~~~~A 87 (811)
..|.+..| +..|..++++++|..|..-|..+++...+ .+ .+-..+..||+.+++++.|
T Consensus 168 ~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA 247 (569)
T PF15015_consen 168 FLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA 247 (569)
T ss_pred cChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 34555544 55677888888888888888888775321 00 1122344445555555555
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003548 88 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (811)
Q Consensus 88 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (811)
+....+.+.++|....-+...|.++..+.+|.+|-.
T Consensus 248 Lnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 248 LNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444444444444444433
No 342
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=3.4 Score=42.24 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhC----CC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003548 28 NKLSPGVTKMLGEASLQ--YAYGNFEQAISLLKEVVRLS----PN-----LPETYNTLGLAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 28 ~~~~~~~~~~~~~a~~~--~~~g~~~~A~~~~~~~l~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 96 (811)
.++++++..++..-..+ +.+.++.+|..+-+..+..- .. .+..|+.+..+|...|+...-...+...+.
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 57777888876554433 45689999998887766431 11 345678888888888887766666655443
Q ss_pred cC-----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003548 97 LS-----P-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--EPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (811)
Q Consensus 97 ~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 166 (811)
.. . ........+-..|...+.|++|.....+..-- ..+ ....++.+|.+..-+++|..|.+++-+++...
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 21 1 11233455667778888888888877766421 111 23456778888888888899999888888888
Q ss_pred CCC
Q 003548 167 PDN 169 (811)
Q Consensus 167 p~~ 169 (811)
|.+
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
Confidence 864
No 343
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.57 E-value=0.26 Score=47.92 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003548 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (811)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 174 (811)
|+++..|...+......|.+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+.++.+|++|..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4455555555444444445555555555555555555554443 223334444555555555555555555544443
No 344
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.52 E-value=4.6 Score=33.57 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=52.9
Q ss_pred HHHHHHHH--HHHHcCChHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 003548 69 ETYNTLGL--AHSALGNHKSAFDFYVIAAHLSPK------------DSALWKQLLTFAVQKGDTAQAMYYIRQAIR---- 130 (811)
Q Consensus 69 ~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---- 130 (811)
.+|..|+. -.+.-|-+++|...++++...... +...+..|+..+..+|+|++++....+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444433 344567888888888888765421 224466777777888888877776666654
Q ss_pred ---cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 131 ---AEPKD----ISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (811)
Q Consensus 131 ---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l 163 (811)
++.+. ..+.+..+..+...|+.++|+..|+.+-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 22222 1233445555555555555555555543
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.44 E-value=3.1 Score=44.77 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=74.0
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc
Q 003548 213 VAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSL 292 (811)
Q Consensus 213 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 292 (811)
-......++++++........-. +..+......++..+.+.|-++.|+... .+++..+.+ ..+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFeL---Al~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFV---------TDPDHRFEL---ALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHHH---HHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhHH---HHhc
Confidence 34445567777776666422111 2334455667777788888888887753 234444444 3677
Q ss_pred CChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcC
Q 003548 293 GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372 (811)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (811)
|+.+.|.+.. ...+++..|..+|.....+|+++-|.++|+++-. +..|..+|.-.|+.+.-.++.+
T Consensus 332 g~L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 332 GNLDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp T-HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CCHHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHH
Confidence 8888887664 2445777888888888888888888888887632 2345555555666554444443
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.95 Score=48.70 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
+-+-|.-+++..+|..++++|...+...|.|. .....++.||....+.+.|.++++.|-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34455667778899999999998888766543 456688899999999999999999999999999988888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFP 167 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p 167 (811)
+....|..++|+.+.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhhc
Confidence 88899999999999888776543
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.37 E-value=1.1 Score=34.19 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH---HHHHHcCChHHHHHHHHHHHc
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLG---LAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~a~~ 96 (811)
.+...+..|..++...+.++|+..++++++..++.++-+..+| .+|...|++.+++.+..+-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888999999999999999988877766555554 567778888887777654443
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.17 E-value=1.8 Score=40.04 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHH
Q 003548 294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED----NIDARLTLASLLLEEAKEEEAI 368 (811)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 368 (811)
.-++|...|-++.....-+++...+.+|..|. ..+.++|+..+-+++++.+. |+++...|+.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45678888877776656678888888888776 67788999999999988543 5888999999999999988875
No 349
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=14 Score=37.00 Aligned_cols=172 Identities=15% Similarity=0.089 Sum_probs=114.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhccc----ccHHHH-
Q 003548 209 IDLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADL- 281 (811)
Q Consensus 209 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~- 281 (811)
-..++.+|...++|.+|+......+.... ++...-.++...-..+|..+.+..+|...+..+..... ++...+
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 34688999999999999999888776543 22344456677778889999999999988887643211 112222
Q ss_pred -HHHHHHHHHHcCChHHHHHHHHHHhhccC--CCCHHHH---HHHHHHHHHhccHHH--HHHHHHHHHHhcCCCHHHHHH
Q 003548 282 -ITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLY---LKLAECYLSLKERAH--AIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 282 -~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~ 353 (811)
-..-|..+....+|..|..+|-++.+.-. .++..+. -.+-.|-...+..++ ++-.-+.+++....+.++...
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 23336666677899999999988775422 1223332 233334444555554 444445667777778899999
Q ss_pred HHHHHHHc--CCHHHHHhhcCCCCCCCcc
Q 003548 354 LASLLLEE--AKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 354 la~~~~~~--g~~~~A~~~~~~a~~~~~~ 380 (811)
.+..+.+. .+++.|+.-|..-+..+|-
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 99888664 4789999988877776664
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.17 E-value=0.62 Score=48.87 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEI---GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
.|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...+++++|....+++.|+.++..++++.+|+++...+
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 344444444444444444444444444332 23334444444444455544555555555555555555555554444
Q ss_pred HhhCCC
Q 003548 197 LKVHPS 202 (811)
Q Consensus 197 l~~~p~ 202 (811)
....|.
T Consensus 472 q~~~Pt 477 (758)
T KOG1310|consen 472 QMSFPT 477 (758)
T ss_pred hhcCch
Confidence 444443
No 351
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=22 Score=38.46 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC----------
Q 003548 115 KGDTAQAMYYIRQAIRA------------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-----FP---------- 167 (811)
Q Consensus 115 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p---------- 167 (811)
...|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....++++-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34588888888877663 3667788999999999999999888888877632 12
Q ss_pred ------CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 168 ------DNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 168 ------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
.+- -+++.....+.+.|-+..|.++++-+++++|. ++-. +.+.+-....+..+|.--+..++..-....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 121 12334445566789999999999999999998 6542 333333333455666666666655432200
Q ss_pred cCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhccc
Q 003548 238 SGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNA 275 (811)
Q Consensus 238 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~ 275 (811)
-..-.+...-..++..|..... -..|...+.+++...|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0001112223344455555444 3556667777766655
No 352
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=26 Score=39.82 Aligned_cols=203 Identities=14% Similarity=0.094 Sum_probs=104.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Q 003548 74 LGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGD 151 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~ 151 (811)
.-.+..+...|+-|+...+. ...+++. ...+...|.-++..|++++|...|-+.+.. +|...-- -+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------KFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------HhcCHHH
Confidence 34455566677777766543 2223322 345667788888888888888888887763 2321111 1122223
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcccHHHHHHHHH
Q 003548 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKTLQHIE 230 (811)
Q Consensus 152 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 230 (811)
..+-..+++.+.+..-.+.+-...|-.+|.++++.++-.+.. +..+ ...+. -.-..-.++.+.+-+++|.-+-.
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI----~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI----SKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH----hcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 333344555555554445555566777888888877644433 3333 11110 01223334444444444443332
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003548 231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303 (811)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (811)
+.-. .. ..+-.++...+++++|+.++..+- +++........|..++... .++-...+-
T Consensus 488 k~~~--------he---~vl~ille~~~ny~eAl~yi~slp---~~e~l~~l~kyGk~Ll~h~-P~~t~~ili 545 (933)
T KOG2114|consen 488 KFKK--------HE---WVLDILLEDLHNYEEALRYISSLP---ISELLRTLNKYGKILLEHD-PEETMKILI 545 (933)
T ss_pred Hhcc--------CH---HHHHHHHHHhcCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhhC-hHHHHHHHH
Confidence 2211 11 112344566788888888887762 2234445556666665533 344444433
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.61 E-value=0.61 Score=30.73 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDR 343 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (811)
.++.++|.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888865
No 354
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=20 Score=37.25 Aligned_cols=148 Identities=10% Similarity=0.102 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHc------------CChHHHHHHHHHHHccCCC
Q 003548 34 VTKMLGEASLQYAYGNFE-QAISLLKEVVRLSPNLPETYNTLGLAHSAL------------GNHKSAFDFYVIAAHLSPK 100 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~a~~~~p~ 100 (811)
....+..-......|.++ +++++=.+.+..+|+...+|...-.++... .-.++-+.+...++..+|+
T Consensus 28 ~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk 107 (421)
T KOG0529|consen 28 LRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK 107 (421)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch
Confidence 334445555555666665 577777788888998777776554444322 1344556666777778888
Q ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHH
Q 003548 101 DSALWKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEI----GDYEKAAESYEQIQKLFPDNVDATK 174 (811)
Q Consensus 101 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~ 174 (811)
...+|.....++.+.+. +..=+....++++.+|.+..+|...=.+.... ....+=+++..+++..++.+..+|.
T Consensus 108 sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 108 SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 88888888777776643 56777778888888887776665544333322 2245556777777777777777776
Q ss_pred HHHHHHH
Q 003548 175 TGAQLFL 181 (811)
Q Consensus 175 ~la~~~~ 181 (811)
....++-
T Consensus 188 yRs~lL~ 194 (421)
T KOG0529|consen 188 YRSLLLS 194 (421)
T ss_pred HHHHHHH
Confidence 6655544
No 355
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.34 E-value=4 Score=48.41 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCC
Q 003548 71 YNTLGLAHSALGNHKSAFD------FYV-IAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKD 135 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~------~~~-~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~ 135 (811)
....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4555666666677776666 443 2233456677778888888888888888887776664422 344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Q 003548 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS----- 202 (811)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----- 202 (811)
...+..++......++...|+..+.++..+ .|.-.....++..++...++++.|+.+++.+.+....
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 556667777777777777777777776654 2333344456666667777777777777777764311
Q ss_pred CCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 003548 203 DAD-LSVIDLLVAILMENNAYEKTLQHIEHAQI 234 (811)
Q Consensus 203 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 234 (811)
... ...+..++++....+++..|....+....
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 111 12344455555555555555555444443
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.99 E-value=22 Score=35.44 Aligned_cols=145 Identities=15% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 003548 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151 (811)
Q Consensus 72 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 151 (811)
+.+-....+..+..+-++.-..+++++|....++..++.-- ..-..+|...++++++... ..+.........|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhcc
Confidence 33444445555666666666677777777766666665432 2234566666666665322 12222222222222
Q ss_pred HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 003548 152 YEKAAESYEQIQKLFPDNV--DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHI 229 (811)
Q Consensus 152 ~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 229 (811)
..+|. .+.+ .+. -+-..++.+..++|+..+|++.++...+..|-.....+..++.+.+....-|.+...++
T Consensus 262 ~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 262 QHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred chhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1111 122 23345677777777777777777777666654332334445555555554444443333
No 357
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.86 E-value=0.7 Score=45.09 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHcCChHHHHHHHHHHHccCCCCHHHHH
Q 003548 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNT-LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (811)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 106 (811)
+.++.-|..-+.-....|-|.+--.+|.+++..+|.+++.|.. -+.-+...++++.+...|.+++..+|.+|..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3344444444444444445555555555555555555555544 333344445555555555555555555555444
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.84 E-value=0.4 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.5
Q ss_pred hhhHhHHHHHHHhchhHHHHHHHHH
Q 003548 724 EALYNIARACHHVGLVSLAASYYEK 748 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~Yek 748 (811)
.+.+++|++++..|..+.|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999988763
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.78 E-value=3.3 Score=38.45 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhccHHHHH
Q 003548 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAI 334 (811)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~ 334 (811)
.-++|...|-.+-....-+.+++.+.+|..|. ..+.++|+.++.++++...++ +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44567777766654444456778888887776 567788888888877664433 7888888888888888888774
No 360
>PF13041 PPR_2: PPR repeat family
Probab=89.56 E-value=1.4 Score=30.51 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003548 279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322 (811)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 322 (811)
...|..+...+.+.|++++|.++|+++.+..-+.+...+..+-.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455566666666666666666666665544555555544443
No 361
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=3.7 Score=40.02 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 171 (811)
.+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|++.+...++..|+++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3344445555555555555555555544455555555555555555555555555554443
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.41 E-value=24 Score=35.14 Aligned_cols=163 Identities=9% Similarity=0.029 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003548 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219 (811)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~ 219 (811)
+.+.+...+..+..+-++.-..+++++|.-..++..++.- ..--..+|..+++++++..... +.........
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~------yr~sqq~qh~ 259 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETI------YRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHH------HhhHHHHhhh
Confidence 3344444555666677777777888888877777776653 2233566777777776643211 1111111112
Q ss_pred ccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcCChHHH
Q 003548 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSA 298 (811)
Q Consensus 220 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 298 (811)
|.-.+|. . ..+......+.-.++.|..++|+..+|.+.++.+.+..|- ....+.-++...+.+..-|.+.
T Consensus 260 ~~~~da~------~---rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 260 SPQHEAQ------L---RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred ccchhhh------h---hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 1 1112223345556788888888888888888887666551 1223445566666666666666
Q ss_pred HHHHHHHhhccCCCCHHHHHH
Q 003548 299 LKYYHFLETNAGTDNGYLYLK 319 (811)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (811)
..++-+.-+...|..+.+.+.
T Consensus 331 qavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 331 QAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHhhccccCcchHHHHHH
Confidence 666555544444555544443
No 363
>PRK12798 chemotaxis protein; Reviewed
Probab=88.99 E-value=32 Score=35.98 Aligned_cols=270 Identities=13% Similarity=0.051 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHH--HHH-HHH----Hhh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAI--SLL-KEV----VRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~--~~~-~~~----l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 95 (811)
..|=+...-+....--...|+...-. ..+ .++ ... +|.|.. -+.+|...|-....+..+ +
T Consensus 32 ~~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~----Aa~iy~lSGGnP~vlr~L---~ 104 (421)
T PRK12798 32 LEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVD----AALIYLLSGGNPATLRKL---L 104 (421)
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchh----HHHhhHhcCCCHHHHHHH---H
Confidence 44555555555566666777765332 222 221 122 333333 345565556555544443 3
Q ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 003548 96 HLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFPDNV-- 170 (811)
Q Consensus 96 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~-- 170 (811)
..++. +.+.-..-|..-+-.|+..+|...+..+-... |...-.+..|.. ......+..+|+..|+.+--..|...
T Consensus 105 ~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvE 184 (421)
T PRK12798 105 ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVE 184 (421)
T ss_pred HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHH
Confidence 33332 44455555666677899999998887653321 333334444443 34556789999999999988889853
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHH
Q 003548 171 -DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKV 248 (811)
Q Consensus 171 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 248 (811)
.++..-..+....|+.+++..+-.+.+.....++-. ..+..++......++-. -...+..++.... .+....+|.
T Consensus 185 EAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL 261 (421)
T PRK12798 185 EAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYL 261 (421)
T ss_pred HHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHH
Confidence 455566667789999999999988888887776642 12223344444443222 2233555555433 455678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 249 KAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 249 ~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
.++..-.-.|+.+-|...-+++.... ..+...+...-+-...-..++++|+..+..+-..
T Consensus 262 ~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 262 RIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 99999999999999988888865532 2335556666666677778899999998876543
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.85 E-value=6.7 Score=31.76 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 209 IDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 209 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
...++.+....|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455555555555555555555544
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.81 E-value=4.7 Score=32.68 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHcccHHHHHHHHHHHHHHhccCCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003548 217 MENNAYEKTLQHIEHAQIVRFSGKELP-----LKLKVKAGICYLRLGNMEKAEILFADLQW 272 (811)
Q Consensus 217 ~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 272 (811)
...|++..|++.+.+............ ..+...++.++...|++++|+..+++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666666666655432222111 23344555556666666666666665543
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.49 E-value=3 Score=41.24 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003548 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI 129 (811)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 129 (811)
|..=+...++.++. ....++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 66666666666654 2467889999999999999999999999999999999999999999999999999999999887
Q ss_pred Hc
Q 003548 130 RA 131 (811)
Q Consensus 130 ~~ 131 (811)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 74
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.75 E-value=1.2 Score=25.93 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 003548 783 EAAYNLHLIYKNSGAVDLARQLLKD 807 (811)
Q Consensus 783 eaa~Nl~~iy~~~g~~~~a~~~~~k 807 (811)
.+.++|..+|...|+++.|+.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999998863
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=34 Score=33.57 Aligned_cols=282 Identities=13% Similarity=0.059 Sum_probs=157.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003548 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPK--------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (811)
Q Consensus 72 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 143 (811)
..++.-....+++++|+..|.+.+..... .......++.+|...|++..--..... ..++|...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~-------sre~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS-------SREAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh-------hHHHHHHhc
Confidence 44556666677888888888777765211 123455677777777766543333221 111221111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHH
Q 003548 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223 (811)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~ 223 (811)
..+..+..+..++..|..++.+-....++... .+=|..-=+..+.. ..-..++.++...|.|.
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--iewA~rEkr~fLr~-------~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--IEWADREKRKFLRL-------ELECKLIYLLYKTGKYS 142 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHHHHHHHHHHHH-------HHHHHHHHHHHhcccHH
Confidence 12233444555555554433222211111111 11111111122211 13347888999999999
Q ss_pred HHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-----ccccHHHHH--HHHHHHHHHcCC
Q 003548 224 KTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-----NAIDHADLI--TEVADTLMSLGH 294 (811)
Q Consensus 224 ~A~~~~~~a~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~--~~la~~~~~~g~ 294 (811)
+|+......+..+. ++.+.-..++..-..+|....+..++...+..+... .|+ ...+. ..-|.......+
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHHHHHhccceeecccc
Confidence 99999888766543 345666788888888999998888888777765332 232 33333 333666778889
Q ss_pred hHHHHHHHHHHhhccC--CCCHHHHH-----HHHHHHHHhccHHHHHHHH--HHHHH-hcCCCHHHHHHHHHHHHH--cC
Q 003548 295 SNSALKYYHFLETNAG--TDNGYLYL-----KLAECYLSLKERAHAIMFF--YKALD-RFEDNIDARLTLASLLLE--EA 362 (811)
Q Consensus 295 ~~~A~~~~~~~~~~~~--~~~~~~~~-----~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~~--~g 362 (811)
|..|..+|-++.+.-. ..+..+.. .+..+. .+..++-...+ +..++ .+....++....++.+.. ..
T Consensus 222 yktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~ 299 (421)
T COG5159 222 YKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLK 299 (421)
T ss_pred chhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHh
Confidence 9999999987775411 22343332 233333 33333333332 33444 344567777777777754 34
Q ss_pred CHHHHHhhcCCCCCCCcc
Q 003548 363 KEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 363 ~~~~A~~~~~~a~~~~~~ 380 (811)
+++.|+..|+.-+..+|-
T Consensus 300 df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 300 DFSDALAQYSDELHQDSF 317 (421)
T ss_pred hHHHHHHHhhHHhccCHH
Confidence 789999999876666554
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.61 E-value=2 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=5.9
Q ss_pred HHHHHHHcCChHHHHHH
Q 003548 74 LGLAHSALGNHKSAFDF 90 (811)
Q Consensus 74 la~~~~~~g~~~~A~~~ 90 (811)
+|..+..+|++++|+..
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33333333333333333
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.58 E-value=27 Score=35.08 Aligned_cols=190 Identities=12% Similarity=0.084 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003548 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH 231 (811)
Q Consensus 152 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 231 (811)
-++|+..-.-+..+.|..++++-.++.+.+...+... ..+++- ....+..--......+-.+++...+.+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G-~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADG-EPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCC-CeeeccccchhhhhHHHHHHHHHHHHH
Confidence 4677877777888888888888777766654332111 111111 000000111112223445677788888
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 232 AQIVRFSGKELPLKLKVKAGICYLRL-----GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 232 a~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
++.. . .+.+..+...++.++... -+|..-..+|+-+....| ++.+-.+.+.+..+..-.+.++...+.+.
T Consensus 282 A~~~-~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~ 356 (415)
T COG4941 282 ALAS-R--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALL 356 (415)
T ss_pred HHHc-C--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence 8765 2 355555555555555443 356677777777666655 45555666666766677788888887766
Q ss_pred hcc-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003548 307 TNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (811)
Q Consensus 307 ~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (811)
... -......+...|..+.++|+.++|...|++++.+.++..+..+....
T Consensus 357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 431 13344566778999999999999999999999999887776655443
No 371
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=43 Score=34.69 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=86.1
Q ss_pred HHcccHHHHHHHHHHHHHHhccCC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHhhh-----cccccHHHHHHHHH
Q 003548 217 MENNAYEKTLQHIEHAQIVRFSGK-----ELPLKLKVKAGICYLRLGNMEKAEILFADLQW-----KNAIDHADLITEVA 286 (811)
Q Consensus 217 ~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~la 286 (811)
..++++.+|.++-+..+......+ -....+++.+..++...|+...-...+...+. .+........+.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 334666666666555443211111 11234566677777777876666555554332 22233455677788
Q ss_pred HHHHHcCChHHHHHHHHHHhhc---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Q 003548 287 DTLMSLGHSNSALKYYHFLETN---AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (811)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (811)
+.|...+.|+.|-....+..-- .+...+..++.+|.+..-+++|..|.+++-+++...|.+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 8899999999998887665411 011245567889999999999999999999999999975
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.44 E-value=4.1 Score=40.36 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (811)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 197 (811)
+..++..+...|+++.+.+.+++.+..+|-+...|..+...|...|+...|+..|+++-
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444443
No 373
>PF12854 PPR_1: PPR repeat
Probab=86.40 E-value=0.94 Score=28.42 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHhhhHh
Q 003548 393 NEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (811)
Q Consensus 393 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (811)
+..++..+...|.+.|+.++|.+++.+|
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4458899999999999999999999876
No 374
>PF13041 PPR_2: PPR repeat family
Probab=86.27 E-value=2.5 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHH
Q 003548 246 LKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVAD 287 (811)
Q Consensus 246 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 287 (811)
.+..+...+.+.|++++|.++|+++.+.+...+...+..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344455555556666666666665555443334444444433
No 375
>PF12854 PPR_1: PPR repeat
Probab=85.48 E-value=1.6 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=23.2
Q ss_pred CcchhHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 003548 528 KNEENQCLIIDLCKALASLQRYEEASEIINLS 559 (811)
Q Consensus 528 ~~~~~~~~~~~~~~~l~~~~~~~eA~~~~~~a 559 (811)
++.--|.+++. .+++.|+.++|.++++.+
T Consensus 5 Pd~~ty~~lI~---~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLID---GYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHH---HHHHCCCHHHHHHHHHhC
Confidence 44456667666 999999999999998765
No 376
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=5.5 Score=38.92 Aligned_cols=74 Identities=16% Similarity=0.005 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 71 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
..++=..+...++++.|..+..+.+.++|.++.-+...|.+|.+.|.+.-|+..++..++..|+++.+-.....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455567788899999999999999999999889999999999999999999999989988988876554443
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=36 Score=33.44 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHH
Q 003548 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA---D-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245 (811)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (811)
.+++.++|..|.+.++.+.+.+.+.+.+....... + ......+|.+|....-.++.++.....++. +.+......
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 46788888888888888888888777665432211 1 112335566666655566666666666655 222222223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhccc
Q 003548 246 LKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (811)
Q Consensus 246 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 275 (811)
.....|.......++.+|-.++...+....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 344456666666777777777777665544
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.28 E-value=2 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.0
Q ss_pred hhhHhHHHHHHHhchhHHHHHH--HHHHHcchh
Q 003548 724 EALYNIARACHHVGLVSLAASY--YEKVLAIKE 754 (811)
Q Consensus 724 e~~yn~gr~~~~~g~~~~Ai~~--YekvL~~~~ 754 (811)
|.+|-+|-.+++.|.+..|++. |+-+..+.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999 556666554
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.14 E-value=11 Score=38.80 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHH
Q 003548 537 IDLCKALASLQRYEEASEIINLSM 560 (811)
Q Consensus 537 ~~~~~~l~~~~~~~eA~~~~~~al 560 (811)
+.||..|..+.+..|+.+++..++
T Consensus 460 L~yas~Ls~lq~vkeq~qvInq~m 483 (569)
T PF15015_consen 460 LQYASLLSQLQRVKEQSQVINQAM 483 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777776665
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.71 E-value=2.3 Score=27.42 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 003548 315 YLYLKLAECYLSLKERAHAIMFFYKALDR 343 (811)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (811)
.++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888876
No 381
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.26 E-value=91 Score=35.67 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHH---hcCCHHHHHHH
Q 003548 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV---QKGDTAQAMYY 124 (811)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 124 (811)
|.-+.=+..+++-+.+++.+...+..|..++...|++++-...-..+..+.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344455666777777888888899999999999999999888888888888998888886654332 33777888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHH
Q 003548 125 IRQAIRAEPKDISLRIHLASFYV-------EIGDYEKAAESYEQIQKLFPDN-------VDATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 125 ~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~ 190 (811)
|++++.. -.++..|...+.... ..++++.-...|.+++..-... ...+...-..|...-..++-+
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9998863 334445555444443 4466777888888887653221 244555555566555556666
Q ss_pred HHHHHHHhhC
Q 003548 191 GILEEYLKVH 200 (811)
Q Consensus 191 ~~~~~~l~~~ 200 (811)
.++...+...
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 6666666543
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.00 E-value=19 Score=38.02 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH--HHHHH--HHHHHHcCChHHHHHHHHHHHcc
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTL--GLAHSALGNHKSAFDFYVIAAHL 97 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~a~~~ 97 (811)
..+.++..++..++|..|...+..+...-|.... .+..+ |.-++..-++.+|.+.++.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886344333 34444 44456688899999999987764
No 383
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.77 E-value=69 Score=33.90 Aligned_cols=129 Identities=10% Similarity=0.041 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL-----WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 144 (811)
.+...|.++..++++.+|...|.+..+...+.+.. +.+.....+-+++.+.-..++...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34455777777778888887777776654444322 2222222334456666666665555666766666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 145 FYVEIGDYEKAAESYEQIQKLFPDNVD---------------ATKTGAQLFLKCGQTARSIGILEEYLK 198 (811)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~~l~ 198 (811)
...+.+++.+|++.+......-..... .-...|.++...|++.++...+++.+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 777777777777777666544222110 112235555666666666666665554
No 384
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.12 E-value=2.4 Score=27.36 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 96 (811)
++..||.+....++|++|+.-|.+++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 385
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.06 E-value=88 Score=42.15 Aligned_cols=115 Identities=10% Similarity=-0.049 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHH---HHHHHHcC-ChHHHHHHHHHHh--hccCCCCHHHHH
Q 003548 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEV---ADTLMSLG-HSNSALKYYHFLE--TNAGTDNGYLYL 318 (811)
Q Consensus 245 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~~~ 318 (811)
.+....|.+..+.|-++-++..+.++.....-+..++...+ +.++.... ....+++..+..- .......+..+.
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~ 2816 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFT 2816 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHH
Confidence 44556677777888888888888887655332333443332 44444433 5566666654321 112233567788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003548 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (811)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (811)
..|....+.|+.++|-+.|..|++++-.-+.+|...|....
T Consensus 2817 lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2817 LKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred hhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999888888888776543
No 386
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=19 Score=37.36 Aligned_cols=127 Identities=7% Similarity=0.081 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHccCCCCHHHHHHHHHHHH----hcCCHHHHH
Q 003548 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN--HKSAFDFYVIAAHLSPKDSALWKQLLTFAV----QKGDTAQAM 122 (811)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~----~~g~~~~A~ 122 (811)
-+++-+.....+++.+|+...+|+....++.+.+. +..=+++.+++++.+|.+..+|...=.+.. ......+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 46667778888999999999999999999987764 578899999999999999887764433332 223456778
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 003548 123 YYIRQAIRAEPKDISLRIHLASFYVE------IGD------YEKAAESYEQIQKLFPDNVDATKT 175 (811)
Q Consensus 123 ~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~~l~~~p~~~~~~~~ 175 (811)
.+..+++..++.+..+|.....++.. .|+ ...-++....++-.+|++..+|+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 88899999999999999888777652 221 223334444455556666666554
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.27 E-value=11 Score=28.87 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHH
Q 003548 180 FLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEH 231 (811)
Q Consensus 180 ~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 231 (811)
++...+.++|+..++++++..++.++ +.++-.+..++...|+|.+.+.+--.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665554433 23344455566666666666555443
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.19 E-value=4.9 Score=35.26 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 83 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 83 (811)
....+..|...+..|++.-|..+++.++..+|++..+...++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888888888888888888776654
No 389
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.16 E-value=57 Score=31.85 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003548 141 HLASFYVEIGDYEKAAESYEQIQKLFP 167 (811)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~l~~~p 167 (811)
.+|.+..+.|+|++.+.++++++..+|
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 344444444444444444444444433
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.83 E-value=63 Score=32.13 Aligned_cols=120 Identities=14% Similarity=-0.021 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhcccccHHHHHH-HHHHHHHHcCChHHHHHHHHH
Q 003548 242 LPLKLKVKAGICYLRLGNMEKAEILFADL----------------QWKNAIDHADLIT-EVADTLMSLGHSNSALKYYHF 304 (811)
Q Consensus 242 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------------~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 304 (811)
.++.++..+|..+.+.|++.+|..+|-.. ....+. ..+.+. ...-.|...++...|...+..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~-e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS-EADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34555666666666666666665554321 111222 223333 333445667888888776654
Q ss_pred Hhhc-------------cCCCCHHHHHHH--HHHHHHhcc---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003548 305 LETN-------------AGTDNGYLYLKL--AECYLSLKE---RAHAIMFFYKALDRFEDNIDARLTLASLLLEEA 362 (811)
Q Consensus 305 ~~~~-------------~~~~~~~~~~~l--a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 362 (811)
..+. ..|.....+..+ -..-.+.++ +..-.+.|+..++.+|........+|..|....
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 4322 112222221111 111112222 333444555556667777778888888887644
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.70 E-value=61 Score=31.94 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhccCC--CChHHHHHHHHHHHHHcCCHHHHHHH
Q 003548 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKAGICYLRLGNMEKAEIL 266 (811)
Q Consensus 210 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 266 (811)
..+|..|+..|++++|+++|+.+...+..+. .....+...+..|....|+.+..+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455555555555555555555544332111 11223344444455555554444443
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.40 E-value=2.8 Score=28.13 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc
Q 003548 785 AYNLHLIYKNSGAVDLARQLLKDYC 809 (811)
Q Consensus 785 a~Nl~~iy~~~g~~~~a~~~~~ky~ 809 (811)
-++|+..|...|+.+.||++++.-+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3799999999999999999998643
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.39 E-value=13 Score=34.93 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCH
Q 003548 42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102 (811)
Q Consensus 42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 102 (811)
..+++.+...+|+...+.-++..|.+......+-..+.-.|++++|...++-+..+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3466778888899888888888888888888888888888999999888888888888754
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.96 E-value=1.1e+02 Score=34.98 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=15.8
Q ss_pred HHHHHcCCHHHHHhhcCCCCCCCccc
Q 003548 356 SLLLEEAKEEEAITLLSPPKDLDSLD 381 (811)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (811)
.-+...|++++|++.+++.- .-|.+
T Consensus 513 f~~~~~g~~~~AL~~i~~L~-liP~~ 537 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKLD-LIPLD 537 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHTT--S-S-
T ss_pred HHHHHcCCHHHHHHHHHhCC-CCCCC
Confidence 34567899999999998664 55543
No 395
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=41 Score=36.72 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=22.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (811)
Q Consensus 113 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (811)
.+.|+++.|.....++ ++..-|..||.+....|++..|.++|.++
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3445555554433322 33444555555555555555555555554
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.47 E-value=5.8 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003548 328 KERAHAIMFFYKALDRFEDNIDARLTLASL 357 (811)
Q Consensus 328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (811)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777788888888778777777766554
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.52 E-value=7 Score=23.61 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 151 DYEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 151 ~~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
+.+.|...|++++...|.++.+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554444
No 398
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.48 E-value=1.2e+02 Score=32.79 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (811)
Q Consensus 84 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 163 (811)
+.-....+.+++... .+..++..++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.+..+|.+++
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 333344444554433 3455667777777766 44556666777777666666666666666665 66777777777766
Q ss_pred Hh
Q 003548 164 KL 165 (811)
Q Consensus 164 ~~ 165 (811)
..
T Consensus 159 yr 160 (711)
T COG1747 159 YR 160 (711)
T ss_pred HH
Confidence 54
No 399
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=58 Score=31.97 Aligned_cols=172 Identities=10% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHH--------cCChHHHHHHHHHHHccCCCCHHH
Q 003548 34 VTKMLGEASLQYAYGNFE-QAISLLKEVVRLSPNLPETYNTLGLAHSA--------LGNHKSAFDFYVIAAHLSPKDSAL 104 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~ 104 (811)
...+++......+..+|. .|++.-...+..+|..-.+|...-.+... .--.+.-+.++..++.-+|.+-..
T Consensus 31 y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~Yqi 110 (328)
T COG5536 31 YHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQI 110 (328)
T ss_pred cchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhh
Confidence 344566666666666654 67777778888888766666555444433 112445566777888888888888
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003548 105 WKQLLTFAVQK--GDTAQAMYYIRQAIRAEPKDISLRIHLASFY------VEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (811)
Q Consensus 105 ~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 176 (811)
|...-.++... .++..-....+++++.+|.+..+|...-.+. ....++..-.++-..++..++.+..+|...
T Consensus 111 W~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 111 WHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred hHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 77666665444 5577777778888888888876665443333 333344455666666777788888777665
Q ss_pred ---HHHHHHcCCH------HHHHHHHHHHHhhCCCCCC
Q 003548 177 ---AQLFLKCGQT------ARSIGILEEYLKVHPSDAD 205 (811)
Q Consensus 177 ---a~~~~~~g~~------~~A~~~~~~~l~~~p~~~~ 205 (811)
....+..|++ ++-+++.-..+-.+|++..
T Consensus 191 ~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 191 YIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 3333334442 3333444444445666665
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.92 E-value=12 Score=36.71 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003548 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (811)
Q Consensus 70 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 130 (811)
.+...+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.|+..|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455677888899999999999999999999999999999999999998888888776543
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=75.66 E-value=1.1e+02 Score=32.20 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=157.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCHHHHHHHHH-HHHhcC
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLT-FAVQKG 116 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~-~~~~~g 116 (811)
-+.+|.-.|--.+. ++.++..++. +.+.-..-|..-+-.|+..+|.+.+...-... |.....+..|.. ......
T Consensus 86 Aa~iy~lSGGnP~v---lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 86 AALIYLLSGGNPAT---LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred HHHhhHhcCCCHHH---HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhccc
Confidence 34455544433333 3344444443 55666666777777899999998886543322 333344555443 345567
Q ss_pred CHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Q 003548 117 DTAQAMYYIRQAIRAEPKDI---SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD---ATKTGAQLFLKCGQTARSI 190 (811)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~ 190 (811)
+...|+..|+.+--..|... .++..-..+..+.|+.+++..+-.+.+..+..++- .+...+......++-.. .
T Consensus 163 dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~ 241 (421)
T PRK12798 163 DPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-D 241 (421)
T ss_pred CHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-H
Confidence 89999999999988888752 34555556668899999999999999988877653 34444445544443222 2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003548 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (811)
Q Consensus 191 ~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 270 (811)
..+..++..-+......+|..++..-...|+.+-|...-.++..+...+......+.+..+....-..+++++...+..+
T Consensus 242 ~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 242 ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 34666666533333445788899999999999999999999999876666677788888888888889999999999998
Q ss_pred hh
Q 003548 271 QW 272 (811)
Q Consensus 271 ~~ 272 (811)
-.
T Consensus 322 ~~ 323 (421)
T PRK12798 322 DR 323 (421)
T ss_pred Ch
Confidence 54
No 402
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.57 E-value=19 Score=33.77 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003548 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (811)
Q Consensus 146 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 203 (811)
+.+.+...+|+...+.-++..|.+......+-.+++-.|++++|...++-+-...|+.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344445555555555555555555555555555555555555555555555555544
No 403
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.49 E-value=56 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=19.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003548 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (811)
Q Consensus 147 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 183 (811)
...+.......+++.++..++.++.....+..+|...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555543
No 404
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=75.46 E-value=2.8 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCchhHHHhhhHhhhhh
Q 003548 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (811)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 424 (811)
++..+...|.+.|++++|.+++.+|.+.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45788899999999999999999998754
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.18 E-value=13 Score=36.59 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003548 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (811)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 164 (811)
.+...+..|...|.+.+|+.+.++++..+|-+...+..+..++...|+--.|...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3456678889999999999999999999999999999999999999998888888887654
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.15 E-value=9.4 Score=38.50 Aligned_cols=62 Identities=27% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555443332334444444444444
No 407
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.62 E-value=13 Score=37.49 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=30.0
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003548 87 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (811)
Q Consensus 87 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 148 (811)
|..+|.+|..+.|.+...+..+|.++...|+.-.|+.+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554332234445555554444
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.74 E-value=7.4 Score=26.12 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 38 LGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
+..|..|...|+.+.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 409
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.41 E-value=1.1e+02 Score=32.93 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 132 (811)
...||+.++..++|+.|...|+.+.+..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 5568999999999999999998887744
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.27 E-value=69 Score=37.52 Aligned_cols=168 Identities=17% Similarity=0.037 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCH--HHHHHHHHHhhhcccccHHHHH----
Q 003548 209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM--EKAEILFADLQWKNAIDHADLI---- 282 (811)
Q Consensus 209 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~---- 282 (811)
+..|+.+|...|+.++|++.+.+........++.....+-.....+...+.. +-..++-.-++..+|.....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6688999999999999999998887642112333334444444455555554 5555555555555553221111
Q ss_pred --------HHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhcc--------HHHHHHH--HHHHHHh-
Q 003548 283 --------TEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE--------RAHAIMF--FYKALDR- 343 (811)
Q Consensus 283 --------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~--~~~al~~- 343 (811)
.....-+......+-++.+++.++......+...+..++..|.+.=+ -+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 12233456777888899999998866455566666666666654322 2233333 2222211
Q ss_pred ------cCC-------CHHHHHHHHHHHHHcCCHHHHHhhcCCCCC
Q 003548 344 ------FED-------NIDARLTLASLLLEEAKEEEAITLLSPPKD 376 (811)
Q Consensus 344 ------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 376 (811)
+|+ ....+...+-++.++|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 221 145666788888899999999988865443
No 411
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.14 E-value=4.7 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCchhHHHhhhHhhhhhh
Q 003548 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (811)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 425 (811)
.+..+..++.+.|+++.|.+++..|.+.++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 567888999999999999999999987653
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.75 E-value=55 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=13.3
Q ss_pred HhccHHHHHHHHHHHHHh
Q 003548 326 SLKERAHAIMFFYKALDR 343 (811)
Q Consensus 326 ~~g~~~~A~~~~~~al~~ 343 (811)
..|+|+.|+..+-+++++
T Consensus 253 ~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 253 AQGRYDDAVARLYRALEL 270 (379)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 467788888777777764
No 413
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.68 E-value=3.8 Score=25.28 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCchhHHHhhhHhhhhhh
Q 003548 396 IIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (811)
Q Consensus 396 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 425 (811)
++..+...|.+.|++++|.++|..|.+.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 356788899999999999999999987654
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.04 E-value=1.1e+02 Score=30.28 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 134 KDISLRIHLASFYVEIGDYEKAAESYE 160 (811)
Q Consensus 134 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (811)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345666666666666666666655553
No 415
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=2.1e+02 Score=34.43 Aligned_cols=174 Identities=13% Similarity=0.030 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------CC--------C--CCH---HHHHHHHHHHHHcccH
Q 003548 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVH--------------PS--------D--ADL---SVIDLLVAILMENNAY 222 (811)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------------p~--------~--~~~---~~~~~l~~~~~~~g~~ 222 (811)
+...+.+|.+|...|..-+|+.+|.++..-. |. . +.+ .-+.....++...+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 3445667777888888888888888776422 10 0 111 1122334555666777
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHH-----
Q 003548 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS----- 297 (811)
Q Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----- 297 (811)
+.+.+.-.+|++..+++.|....+...+-.-+..+|.+-+|...+-+... .+...+.+..+..++++.|+.+.
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 77777777777777766666666677677777778888887776655322 12244566667777777765532
Q ss_pred -------HHH-HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhcC
Q 003548 298 -------ALK-YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI-MFFYKALDRFE 345 (811)
Q Consensus 298 -------A~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p 345 (811)
-.. +++.+-..........|..+--.+...+++.+|- -.|+.+..+..
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 222 2222222212223334444444555666666554 45666665543
No 416
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.63 E-value=2.2e+02 Score=33.04 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhccc-------c--cHHHHHHHHHHHHH------------HcCChHHHHH---HHH
Q 003548 248 VKAGICYLRLGNMEKAEILFADLQWKNA-------I--DHADLITEVADTLM------------SLGHSNSALK---YYH 303 (811)
Q Consensus 248 ~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~--~~~~~~~~la~~~~------------~~g~~~~A~~---~~~ 303 (811)
...|.-+...|++.+|++.|..++-.-| . ....-+..++.-|. ..+..+.+.+ +|.
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 3445566778999999999999754332 1 11222333333331 1223344421 221
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHH
Q 003548 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353 (811)
Q Consensus 304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 353 (811)
.+ .........++..--..+.+++++..|..+..+.+++.|..+.+...
T Consensus 1075 ~~-~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1075 HC-KLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred cC-CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 11 12122233344555567889999999999999999999977665443
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.63 E-value=1.2e+02 Score=31.72 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 003548 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (811)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 235 (811)
.++..++..|...|+++.|++.|-++-........ ...+.++..+-...|+|.....+..++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35666777777788888888887775544433221 123555666666777777777666666543
No 418
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.54 E-value=2.2e+02 Score=32.91 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQKGDT 118 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~ 118 (811)
-..++++.-|+-|+.+.+.- ..+++ -...+...|.-++..|++++|...|-+.+..- |...- .-+......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHH
Confidence 34567777788888776543 22232 34567788899999999999999998887642 32111 111222233
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 156 (811)
.+-..+++...+..-.+.+-...|-.+|.++++.++-.
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHH
Confidence 33344445555544444444555666677666655433
No 419
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.23 E-value=79 Score=27.68 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003548 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (811)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (811)
...+.....+..++.++..++.++..+..+..+|... +..+.+.++.. .++. --.-..+..+.+.+-++++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~-yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH-YDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc-CCHHHHHHHHHHcCcHHHHHHH
Confidence 3467888899999998888877788888888888754 44555666652 1111 1122334444555556666655
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003548 125 IRQAIRAEPKDISLRIHLASFYV-EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (811)
Q Consensus 125 ~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 181 (811)
+.+. .....+. .++. ..++++.|++++.+ +.+++.|..++..+.
T Consensus 92 ~~k~----~~~~~Al----~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 92 YKKD----GNFKDAI----VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHhh----cCHHHHH----HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5442 1111111 1122 22566666666654 245666666665444
No 420
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.48 E-value=2e+02 Score=32.05 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
.+.+-|.-.++..+|..+++.|...+..-|.+ ......++.+|..+.+.+.|.++++++-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34455666778889999999999999877654 345678899999999999999999999999999998888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Q 003548 178 QLFLKCGQTARSIGILEEYLKVH 200 (811)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~l~~~ 200 (811)
.+....|..++|+.+........
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88889999999999988876543
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.38 E-value=42 Score=33.09 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003548 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHA 232 (811)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 232 (811)
.+...+|..|+..|++++|+++|+.+........- ..++..+..++...|+.+..+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34456777777777777777777777554332211 134556667777777777666655443
No 422
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.86 E-value=99 Score=28.32 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003548 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (811)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 146 (811)
++..|++++..+.. .+.+.+...++.++
T Consensus 88 ~l~~a~r~~~~aC~--~n~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 88 SLSKAIRPMKIACD--ANIPQACRYLGLLH 115 (248)
T ss_pred CHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence 44455555554443 23344444444443
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=10 Score=38.39 Aligned_cols=128 Identities=12% Similarity=0.187 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 119 (811)
.++..+..++++.|..-+.++++.-.. ....+..+... +...+.+.-......++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~------------~s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSE------------QSRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcc------------ccccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 456789999999999999988764211 00000111110 011111122233444677777777888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003548 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (811)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 182 (811)
.|+..-..++..++....+++.++..+....++++|++.++.+....|++..+...+...-..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 777777777777777777888888888888888888888888888888877665555444333
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.04 E-value=14 Score=38.79 Aligned_cols=59 Identities=25% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHh-------hccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 003548 284 EVADTLMSLGHSNSALKYYHFLE-------TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (811)
Q Consensus 284 ~la~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (811)
.+.+++.-.|+|..|++.++.+. ....+-...+++.+|-+|..+++|.+|++.|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554321 111223455667777777777777777777766653
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=66.00 E-value=1.1e+02 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=16.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003548 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (811)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 143 (811)
+-......|+++.|-++|.-++...+-+....+.+|
T Consensus 47 lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG 82 (199)
T PF04090_consen 47 LLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIG 82 (199)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHH
Confidence 333444455555555555555554444443333443
No 426
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.22 E-value=99 Score=34.02 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
+..+-.+|-.++|+ ...++ ++-.+. +..+.|+++.|.+...++ ++..-|..||.+....|++..
T Consensus 621 a~Fle~~g~~e~AL-------~~s~D-~d~rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 621 AHFLESQGMKEQAL-------ELSTD-PDQRFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred HhHhhhccchHhhh-------hcCCC-hhhhhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchh
Confidence 34444555555554 44443 233333 345789999998776554 566779999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003548 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (811)
|.+|+.++.... .|-.++...|+-+.-...-..+-+....+.. -.+|+..|+++++++.+...
T Consensus 685 A~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 999999875422 2233344445443322222222222222221 13567788888888877654
No 427
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=64.75 E-value=1.2e+02 Score=27.93 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=108.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-----cCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-----
Q 003548 46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----- 115 (811)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~----- 115 (811)
.+.+|++|..+|..--..+ ..+..-+.+|..++. .+++..|+..+..+.. .+++.+...+|.++...
T Consensus 47 i~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~ 123 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK 123 (248)
T ss_pred HHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc
Confidence 3567888888777654433 245666666665543 4578899999999877 45677888888777643
Q ss_pred C--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 003548 116 G--DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIG 191 (811)
Q Consensus 116 g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~ 191 (811)
+ +..+|..++.++..+ ++..+.+.|...|..-.+ + +....|. .+. ..+..+.-..+.+.|.+
T Consensus 124 ~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p~---~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 124 ADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGKPL---DRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCCCc---chhhhhhhhHhHHHHHH
Confidence 2 377899999998775 466677777777654322 2 2222342 121 22344555678888988
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHH
Q 003548 192 ILEEYLKVHPSDADLSVIDLLVAILMEN----NAYEKTLQHIEHAQIV 235 (811)
Q Consensus 192 ~~~~~l~~~p~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~ 235 (811)
+--++.+++.- .+..++...|..- .+.++|..+-.++.++
T Consensus 190 fa~kACel~~~----~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 190 FAIKACELDIP----QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHhcCCh----HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 88888776522 2455666666432 3577787777777665
No 428
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.09 E-value=19 Score=30.19 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred hhHhHHHHHHHhchhHHHHHHHHHHHcchhccCCCCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 003548 725 ALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQL 804 (811)
Q Consensus 725 ~~yn~gr~~~~~g~~~~Ai~~YekvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~Nl~~iy~~~g~~~~a~~~ 804 (811)
-+-++|....+.|..-.||-||+.+|.+.++. . ... +....+..-.+.-.-+||+..|+..|+++-...+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~---~----~~~---~~el~dll~i~VisCHNLA~FWR~~gd~~yELkY 72 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEI---D----ESN---EIELEDLLTISVISCHNLADFWRSQGDSDYELKY 72 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh---c----ccc---cccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHH
Confidence 46788999999999999999999999997652 0 000 0000011124667789999999999998877665
Q ss_pred H
Q 003548 805 L 805 (811)
Q Consensus 805 ~ 805 (811)
+
T Consensus 73 L 73 (140)
T PF10952_consen 73 L 73 (140)
T ss_pred H
Confidence 5
No 429
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=63.06 E-value=12 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 003548 177 AQLFLKCGQTARSIGILEE 195 (811)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~ 195 (811)
...|.+.|++++|.+.+++
T Consensus 7 i~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3333333333333333333
No 430
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.67 E-value=26 Score=30.79 Aligned_cols=50 Identities=20% Similarity=0.038 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 003548 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363 (811)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 363 (811)
.+.....+......|++.-|.++...++..+|+|.+++...+.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666666665553
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.91 E-value=1.2e+02 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh-------hcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 247 KVKAGICYLRLGNMEKAEILFADLQ-------WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 247 ~~~la~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
...+..++.-+|++..|++.++.+- ..-|.-...+++.+|-+|+..++|.+|+..|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777766541 12233355678888888888888998888887765
No 432
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=61.63 E-value=19 Score=30.56 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003548 39 GEASLQYAYGNFEQAISLLKEVVRLSPN 66 (811)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 66 (811)
..|..+...|++++|...|-+++...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4455666666666666666666666553
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=61.32 E-value=21 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHh
Q 003548 283 TEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 283 ~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
..+...|.+.|++++|..+|.++.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555554443
No 434
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.11 E-value=3e+02 Score=31.51 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKE 59 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~ 59 (811)
.......+++.|++++|.++..+
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455667899999999999833
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.40 E-value=42 Score=25.72 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
..+..+..+|..+-..|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455677778888888888888877776654
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.37 E-value=2e+02 Score=29.28 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 003548 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (811)
Q Consensus 85 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 113 (811)
++|+..-+-...+-|..++++-.++.+.+
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll 241 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLL 241 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45555555555666666666555555444
No 437
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=59.77 E-value=22 Score=30.21 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhcCCCCCchhhhcchhhcccchHHHHHHHHHHHhhCCCChHHHHHH
Q 003548 629 KHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCV 685 (811)
Q Consensus 629 ~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~y~~a~~~~p~~p~~~l~l 685 (811)
.-++||++.... |..++..|++..|+.+|-+|+...| +|.-.+.+
T Consensus 58 ~~e~~Fl~qV~l-----------GE~L~~~G~~~~aa~hf~nAl~V~~-qP~~LL~i 102 (121)
T PF02064_consen 58 EMERFFLQQVQL-----------GEQLLAQGDYEEAAEHFYNALKVCP-QPAELLQI 102 (121)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHTSS-SHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 446777776664 9898889999999999999999999 57655554
No 438
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.16 E-value=2e+02 Score=30.22 Aligned_cols=64 Identities=19% Similarity=0.022 Sum_probs=45.0
Q ss_pred CCHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHH--HHHcCChHHHHHHHHH
Q 003548 30 LSPGVTKMLG--EASLQYAYGNFEQAISLLKEVVRLSPN-----LPETYNTLGLA--HSALGNHKSAFDFYVI 93 (811)
Q Consensus 30 ~~~~~~~~~~--~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~--~~~~g~~~~A~~~~~~ 93 (811)
.|-++..... ++..+++.++|..|...|+++.+..+. ....+..+..+ ++..-++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3334444443 566899999999999999999987542 22334444444 4567788999999986
No 439
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.95 E-value=51 Score=27.46 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 83 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 83 (811)
...+.+|...+..||+..|.+.+.++-+..+..+-.+..-+.+...+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3467778888888888888888888866655555555555666666654
No 440
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.65 E-value=2.1e+02 Score=29.00 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHH
Q 003548 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD---AD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245 (811)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (811)
.+++...|..|++.|+-+.|.+.+.+..+..-.- .+ ......+|..|....-..+.++..+..++. +.+......
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhh
Confidence 4677888888888888888888877766543211 11 112334555555554444444444444444 222222334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhccc
Q 003548 246 LKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (811)
Q Consensus 246 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 275 (811)
.....|.......++.+|-.+|-..+....
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444556666677778888777777665543
No 441
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.36 E-value=3.9e+02 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003548 244 LKLKVKAGICYLRLGNMEKAEILFADLQW 272 (811)
Q Consensus 244 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 272 (811)
...+...+.++.++|+.++|+..+-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45667778888889999999998877654
No 442
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.82 E-value=2.4e+02 Score=29.04 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHH
Q 003548 253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 332 (811)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 332 (811)
-+...|+...|..+-.+. .-.+...|+....++...++|++-..+... ...|..|.-...++...|+..+
T Consensus 186 ~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 345678877777775554 113667788888999999999876654321 1234455555667778899999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHhhcCC
Q 003548 333 AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSP 373 (811)
Q Consensus 333 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 373 (811)
|..+..+ -|+ .....+|.+.|++.+|.+..-+
T Consensus 256 A~~yI~k----~~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPK----IPD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHh----CCh-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9888877 121 3566778889999998876543
No 443
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.61 E-value=2.8e+02 Score=29.83 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003548 139 RIHLASFYVEIGDYEKAAESYEQIQKLFP 167 (811)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 167 (811)
...+|++.+..|+|+-|...|+.+.+-..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 55689999999999999999999887554
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.02 E-value=2.4e+02 Score=28.70 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH-HH
Q 003548 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SV 208 (811)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~ 208 (811)
.+++...+..|.+.|+.+.|.+.+.+..+..-. -.+ ....+|..|....-..+.++..+.+++...+...- ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 578899999999999999999999887764322 122 33456666666555556666566666554432210 12
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhc
Q 003548 209 IDLLVAILMENNAYEKTLQHIEHAQIVRF 237 (811)
Q Consensus 209 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 237 (811)
-..-|...+...++.+|...|-.++..+.
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 23445666677888888888887776543
No 445
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.15 E-value=2.1e+02 Score=27.91 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSA-LGNHKSAFDFYVIA 94 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a 94 (811)
.++..|.++...|+|++.+..+++++..+|+ +.+-...++.+|-. .|....+...+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 4667888999999999999999999998776 45556666666533 34444444444433
No 446
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.27 E-value=5e+02 Score=31.62 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003548 38 LGEASLQYAYGNFEQAISLLKEV 60 (811)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~ 60 (811)
+.....++..++|.+|.+..++-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678888899999888764
No 447
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.64 E-value=2.8e+02 Score=28.25 Aligned_cols=160 Identities=12% Similarity=0.030 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCCCCHHH
Q 003548 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH----LSPKDSAL 104 (811)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~ 104 (811)
+++++....+.. .+..+++.+.++.+++.+..+|--.+.++..+.+..++| ++.+.......+. .-|.-.
T Consensus 97 ~p~ad~~~~~~~---~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~-- 170 (301)
T TIGR03362 97 PPPADRVADYQE---LLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL-- 170 (301)
T ss_pred CCCHHHHHHHHH---HHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh--
Confidence 344454444443 457889999999999999999988899999999999999 4555555443332 223211
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHH-----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003548 105 WKQLLTFAVQKGD---TAQAMYYIRQAIR-----------AEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (811)
Q Consensus 105 ~~~la~~~~~~g~---~~~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 168 (811)
.+.+..|- -++....+..... ..+ .+......-+......|..+.|+..++..+...+.
T Consensus 171 -----~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s 245 (301)
T TIGR03362 171 -----ELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQARE 245 (301)
T ss_pred -----hcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCC
Confidence 01111111 0111111111000 011 11223334467778889999999999986554333
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 169 N---VDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (811)
Q Consensus 169 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 199 (811)
. ......++.++...|..+-|...|+.+.+.
T Consensus 246 ~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 246 PRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 344567889999999999999999988764
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.26 E-value=2.6e+02 Score=27.81 Aligned_cols=102 Identities=9% Similarity=-0.018 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccCCCChHHH---HHHHHHHHHHcCCHHHHHHHHHHhhhcccc--cHHH
Q 003548 206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL---KVKAGICYLRLGNMEKAEILFADLQWKNAI--DHAD 280 (811)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 280 (811)
..++.++|..|.+.++.+.+.+++.+.+...- ......++ ...+|.+|....-.++.++..+.+++.... ....
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~-stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAM-STGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 45788888888888888888888887766421 11222332 334455554444455555555555554331 1112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 003548 281 LITEVADTLMSLGHSNSALKYYHFLETN 308 (811)
Q Consensus 281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (811)
.-...|...+...++.+|..++...+..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2233455555566666776666655533
No 449
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=50.68 E-value=5.2 Score=44.49 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhh--cccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh--hccCCCCHHHHHHH
Q 003548 245 KLKVKAGICYLRLGNMEKAEILFADLQW--KNAIDHADLITEVADTLMSLGHSNSALKYYHFLE--TNAGTDNGYLYLKL 320 (811)
Q Consensus 245 ~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l 320 (811)
......+..++..|++..|..++..+.. ..+..........+.+....|++++|+..+.... ..........+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 3334444445555555555555544431 1122233333444555555555555555554211 11111122333444
Q ss_pred HHHHHHhccHHHHHHHH
Q 003548 321 AECYLSLKERAHAIMFF 337 (811)
Q Consensus 321 a~~~~~~g~~~~A~~~~ 337 (811)
+.++...|++-+|...+
T Consensus 105 A~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARER 121 (536)
T ss_dssp -----------------
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 55555555544444433
No 450
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.60 E-value=5.4e+02 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003548 68 PETYNTLGLAHSALGNHKSAFDFYVIAAH 96 (811)
Q Consensus 68 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 96 (811)
+...+.+|.+|...|...+|+.+|.+|..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 34456667777777777777777766654
No 451
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=50.56 E-value=5.5e+02 Score=31.30 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=10.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHH
Q 003548 318 LKLAECYLSLKERAHAIMFFYKA 340 (811)
Q Consensus 318 ~~la~~~~~~g~~~~A~~~~~~a 340 (811)
..|+.-+...+++-+|-+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHH
Confidence 33444444455555554444443
No 452
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=1.1e+02 Score=30.28 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHccCCCCHHHHHHHHHHH------HhcCCHHHH
Q 003548 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSAL--GNHKSAFDFYVIAAHLSPKDSALWKQLLTFA------VQKGDTAQA 121 (811)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~------~~~g~~~~A 121 (811)
++.-+..+..+++.+|.+..+|...-.++..- ..+..-+...++.+..+|.+...|...-.+. ....++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34456678888899999999998887777654 5677777888999999999887776433333 334445555
Q ss_pred HHHHHHHHHcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003548 122 MYYIRQAIRAEPKDISLRIHL---ASFYVEIGD------YEKAAESYEQIQKLFPDNVDATKTGA 177 (811)
Q Consensus 122 ~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la 177 (811)
.++-..++..++.+..+|... .......|+ +++-+++....+-.+|++..+|..+-
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 666667788899999888776 333444554 44556666666677888888776543
No 453
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.43 E-value=41 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003548 175 TGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~ 196 (811)
.+...+.+.|+++.|..+++.+
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3333444444444444444433
No 454
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=50.02 E-value=1.7e+02 Score=31.45 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 003548 250 AGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (811)
Q Consensus 250 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (811)
+...++..|..++++.++..=+.-+--.+.-.++.+-+.+++.|+|..|.++...+.
T Consensus 109 ~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 109 LVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 334444444444444444432222111133334444444445555555544444433
No 455
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.23 E-value=2.1e+02 Score=28.55 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=75.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHH---HHcCCh----HHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 40 EASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAH---SALGNH----KSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~g~~----~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
....++..++|++=-..+.+..+...+ ..+..+..+... +..... ..-.+.++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456678889999888888887654322 111112222111 111111 13455556666778888888887777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003548 111 FAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 187 (811)
.+....=- -+...- +.-...-+..... -.+.|...+.+++.++|....+...+..+-...|.++
T Consensus 86 ~~~~~Aw~-------~RG~~~A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 86 YWVHRAWD-------IRGSGYASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHH-------HHccchhcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 66432100 000000 0001112221111 2567888888888888888888888888877778765
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.08 E-value=3.6e+02 Score=28.44 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhcc--cccHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 003548 245 KLKVKAGICYLRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (811)
Q Consensus 245 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (811)
.++..+|..|...|+.+.|++.|.++..-- .......+.++..+-...|+|.....+..++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455567777777777777777777743311 122445566666677777777777766666654
No 457
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=47.81 E-value=6.1 Score=43.94 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003548 175 TGAQLFLKCGQTARSIGILEEY 196 (811)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~ 196 (811)
.-+..+...|++..|...+.++
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l 50 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQL 50 (536)
T ss_dssp ----------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhc
Confidence 3344444455555555444443
No 458
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.55 E-value=3.2e+02 Score=27.71 Aligned_cols=188 Identities=14% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC-CHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCH--------
Q 003548 137 SLRIHLASFYVEIG-DYEKAAE-SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-------- 206 (811)
Q Consensus 137 ~~~~~la~~~~~~g-~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------- 206 (811)
.....++..+...| +.-++.+ +.+.++..+..-......+..+-...+..+.-..---.-.-..|-.+..
T Consensus 24 qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfeEqv~ 103 (399)
T KOG1497|consen 24 QYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEKIQPRVISFEEQVA 103 (399)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcccccccHHHHHH
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-----hhhcccccH
Q 003548 207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFAD-----LQWKNAIDH 278 (811)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~ 278 (811)
.....|+.+|...++|..|...+.-.-...+ .+.......+..+|.+|...++..+|..+..+ +-..++.-.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003548 279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY 324 (811)
Q Consensus 279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 324 (811)
...-...|+++-..+++-+|...|-++....--+.......++.+.
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~ 229 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKAL 229 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
No 459
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=17 Score=36.79 Aligned_cols=68 Identities=10% Similarity=-0.062 Sum_probs=35.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003548 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140 (811)
Q Consensus 73 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 140 (811)
.++.+-+..+.+..|+..-..++..++....+++..+..+....++++|+..+..+....|++.....
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 34455555555555555544444445555555555555555555555555555555555555544433
No 460
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.82 E-value=5.2e+02 Score=29.68 Aligned_cols=83 Identities=10% Similarity=-0.052 Sum_probs=46.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 003548 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN--HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (811)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 120 (811)
.+...+.|..|++..+-+-.-......++...+..+.+..+ -++++....+=+..--.....+...|......|+.+-
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~L 525 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFEL 525 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHH
Confidence 34567788888887765422221123555566666665532 2344444444333311233456677777788888887
Q ss_pred HHHHH
Q 003548 121 AMYYI 125 (811)
Q Consensus 121 A~~~~ 125 (811)
|...+
T Consensus 526 A~kLl 530 (829)
T KOG2280|consen 526 ARKLL 530 (829)
T ss_pred HHHHH
Confidence 76554
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.80 E-value=31 Score=33.17 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=17.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 003548 148 EIGDYEKAAESYEQIQKLFPDN 169 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~ 169 (811)
..++...|+.++++++.++|.-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4467788999999999988764
No 462
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.64 E-value=84 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.013 Sum_probs=9.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHH
Q 003548 320 LAECYLSLKERAHAIMFFYKAL 341 (811)
Q Consensus 320 la~~~~~~g~~~~A~~~~~~al 341 (811)
.|.-+-..|++.+|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3333444455444444444443
No 463
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=44.07 E-value=65 Score=19.38 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHH
Q 003548 593 FDCAKYILQLHPYSLSAWNCYYKVLS 618 (811)
Q Consensus 593 ~~~~r~~~~~~p~~~~~~~~~~~~~~ 618 (811)
+.....++..+|.+..+|+-...++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45677888999999999987766654
No 464
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.58 E-value=71 Score=30.02 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003548 89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (811)
Q Consensus 89 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 133 (811)
+..++.++..| ++..+..++.++...|+.++|.....++....|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444444 345555555666666666666666666655555
No 465
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.21 E-value=61 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
.+..++.+|..+=..|+|++|+.+|.++++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445567777777777888777777776654
No 466
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=41.51 E-value=3.2e+02 Score=29.43 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHcCCHHHHHHHHHHhhhccc--ccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHH
Q 003548 255 LRLGNMEKAEILFADLQWKNA--IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 332 (811)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 332 (811)
....+.+++..++-+...... .-.+.....+.+.+.+.|..++++.++..=+..+-..+......+-..+.+.|++..
T Consensus 77 ~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~ 156 (429)
T PF10037_consen 77 ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKS 156 (429)
T ss_pred CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHH
Confidence 334445666666666533211 112344567888999999999999999765545455567777788889999999999
Q ss_pred HHHHHHHHHHhc-CCCHH
Q 003548 333 AIMFFYKALDRF-EDNID 349 (811)
Q Consensus 333 A~~~~~~al~~~-p~~~~ 349 (811)
|.+....+...+ .+++.
T Consensus 157 A~~V~~~~~lQe~~~~~~ 174 (429)
T PF10037_consen 157 AAKVATEMMLQEEFDNPS 174 (429)
T ss_pred HHHHHHHHHHhhccCCch
Confidence 999888776553 34443
No 467
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.09 E-value=1.2e+02 Score=34.64 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHH--cCChHHHHHHHHHHHccCCCCHHHHHHHH
Q 003548 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSA--LGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (811)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~la 109 (811)
.+...++..+..+++.+|.--|..++..-|. .+......+.++.. .|++..++.-..-++...|....++...+
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 3445677777778888877667776666553 23344555555554 45777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 003548 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (811)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 141 (811)
.+|...+.++-|++-+.-.....|.+..+...
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ei 166 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEI 166 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 77777777777777766666677777554443
No 468
>PRK09687 putative lyase; Provisional
Probab=40.96 E-value=3.9e+02 Score=26.89 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Q 003548 280 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE 345 (811)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 345 (811)
.+....+..+.+.|+ ..|+..+-+.++. +. .....+.++-..|.. +|+..+.+++..+|
T Consensus 207 ~VR~~A~~aLg~~~~-~~av~~Li~~L~~--~~---~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 207 EIRIEAIIGLALRKD-KRVLSVLIKELKK--GT---VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHHHHHccCC-hhHHHHHHHHHcC--Cc---hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 333344444444444 3455555444422 11 223334444444443 45555555555444
No 469
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=40.96 E-value=34 Score=21.61 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 003548 784 AAYNLHLIYKNSGAVDLARQLLKDYCT 810 (811)
Q Consensus 784 aa~Nl~~iy~~~g~~~~a~~~~~ky~~ 810 (811)
|.+-|.+||.-+|| +.+.+.+..|+.
T Consensus 2 A~lgLGl~~aGs~~-~~~~~~L~~~l~ 27 (35)
T PF01851_consen 2 AILGLGLIYAGSGN-EEVLDLLRPYLS 27 (35)
T ss_dssp HHHHHHHHTTTT---HHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 67889999999998 677888887763
No 470
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.23 E-value=78 Score=23.65 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 35 TKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
..++..|..+=..|++++|+..|.+++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666666667777777776666554
No 471
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=40.13 E-value=3e+02 Score=27.52 Aligned_cols=137 Identities=6% Similarity=-0.036 Sum_probs=72.8
Q ss_pred HHHHHcCChHHHHHHHHHHHccC----CCCHHHHHHHHHH--HHhcCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003548 76 LAHSALGNHKSAFDFYVIAAHLS----PKDSALWKQLLTF--AVQKGDT----AQAMYYIRQAIRAEPKDISLRIHLASF 145 (811)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~la~~--~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~ 145 (811)
..+...++|++=...+.+..... +.... +...... ....... ..-...++.-++..|++..++..+|..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34556677777766776665332 12222 1111111 1111111 134556666677788888888777776
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcccHHHH
Q 003548 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (811)
Q Consensus 146 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l~~~~~~~g~~~~A 225 (811)
+....=--.....- +....+.|..... -.+.|...+.+++.++|.... +...+..+-...|.++=-
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~--A~~~m~~~s~~fgeP~WL 152 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVA--AAIGMINISAYFGEPDWL 152 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchH--HHHHHHHHHhhcCCchHH
Confidence 65422100000000 0011222322221 246789999999999999875 677777888888887643
Q ss_pred HH
Q 003548 226 LQ 227 (811)
Q Consensus 226 ~~ 227 (811)
..
T Consensus 153 ~~ 154 (277)
T PF13226_consen 153 AA 154 (277)
T ss_pred HH
Confidence 33
No 472
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=39.75 E-value=2.5e+02 Score=24.22 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------------CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhccC
Q 003548 174 KTGAQLFLKCGQTARSIGILEEYLKVH--------------PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG 239 (811)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 239 (811)
..+..++.+.|+.+....++++...++ |-.|....+..++..+...|++..|+++.....+.++
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-- 83 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-- 83 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC--
Confidence 334444445555555555554443322 3334445677777777777888888888877777766
Q ss_pred CCChHHHHHH
Q 003548 240 KELPLKLKVK 249 (811)
Q Consensus 240 ~~~~~~~~~~ 249 (811)
-+.+...|..
T Consensus 84 I~i~~~~W~~ 93 (126)
T PF12921_consen 84 IPIPKEFWRR 93 (126)
T ss_pred CCCCHHHHHH
Confidence 3333444433
No 473
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.59 E-value=96 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003548 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201 (811)
Q Consensus 156 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 201 (811)
++..++.++..| ++.++..++.++...|+.++|.....++....|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444444 455555556666666666666666666555555
No 474
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.53 E-value=45 Score=25.57 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003548 37 MLGEASLQYAYGNFEQAISLLKEVV 61 (811)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l 61 (811)
++.+|...=..|+|++|+.+|..++
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~al 33 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAV 33 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 475
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.60 E-value=70 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
.+..+..+|..+=..|+|++|+.+|.++++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345566677777777888888777777765
No 476
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=37.87 E-value=7.2e+02 Score=29.02 Aligned_cols=258 Identities=11% Similarity=0.035 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHH
Q 003548 119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL---KCGQTARSIGILEE 195 (811)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~ 195 (811)
++=+..++.-+.+++.+......|..++...|++++-...-..+.++.|..+..|.....-.. ..+...++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 333444444444555555555555555555565555555555555555555555544433222 12344445555555
Q ss_pred HHhhCCCCCCHHHHHHHHH-------HHHHcccHHHHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHcCCHHHHHH
Q 003548 196 YLKVHPSDADLSVIDLLVA-------ILMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAEI 265 (811)
Q Consensus 196 ~l~~~p~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~ 265 (811)
++...-.-+ +|...+. .+...++++.....|.+++...+.. ....+.++..+-..|...-..++-+.
T Consensus 176 al~dy~~v~---iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a 252 (881)
T KOG0128|consen 176 ALGDYNSVP---IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIA 252 (881)
T ss_pred Hhcccccch---HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 554322211 1211111 1233345555555666655442211 11223333444444444444444555
Q ss_pred HHHHhhhccccc--HHHHHHHHH--H-HHHHcCChHHHHHHHH-------HHhhccCCCCHHHHHHHHHHHHHhccHHHH
Q 003548 266 LFADLQWKNAID--HADLITEVA--D-TLMSLGHSNSALKYYH-------FLETNAGTDNGYLYLKLAECYLSLKERAHA 333 (811)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~la--~-~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 333 (811)
++...+...-.. ...-|.... . ......+++.|+.-+. +.+.. .+.....|..+.......|+...-
T Consensus 253 ~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 253 LFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHH
Confidence 555433321100 001111111 1 1122334444444433 23322 344455667777777888998888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHhhcCCCCCCCcc
Q 003548 334 IMFFYKALDRFEDNIDARLTLASLLL-EEAKEEEAITLLSPPKDLDSL 380 (811)
Q Consensus 334 ~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 380 (811)
...+++++...+.+.+.|+..+...- .++-.+.+...+.++....|-
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 88999999888888888888765442 233344444555555555443
No 477
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.34 E-value=70 Score=24.55 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003548 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97 (811)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 97 (811)
+.++|+.++.+++..+ ..|++++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 3567788888776654 368899999999888865
No 478
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.08 E-value=4.4e+02 Score=26.33 Aligned_cols=86 Identities=17% Similarity=0.048 Sum_probs=52.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC--HHHHHHHHHH-----H
Q 003548 286 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN--IDARLTLASL-----L 358 (811)
Q Consensus 286 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~-----~ 358 (811)
..++.+.+++.+++...-+.-.....--+.+.-.-...|.+.|++....+.-..-+. +|+| ..-+..++++ +
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHH
Confidence 345667777777777665554432222345555555667778887777666655553 5554 1124444444 4
Q ss_pred HHcCCHHHHHhhcC
Q 003548 359 LEEAKEEEAITLLS 372 (811)
Q Consensus 359 ~~~g~~~~A~~~~~ 372 (811)
.=.|.+++|.++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 45799999999984
No 479
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.96 E-value=4.7e+02 Score=26.65 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=71.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhhCCCCCCHHHHHHHHHHHHHcccH-
Q 003548 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE----YLKVHPSDADLSVIDLLVAILMENNAY- 222 (811)
Q Consensus 148 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~l~~~p~~~~~~~~~~l~~~~~~~g~~- 222 (811)
..+++.+.++..++.+..+|--.+..+..+.++.++|. +.+...+.. .++.-|.-. .+.+..|.+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~---------~L~F~DGtPF 180 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLL---------ELKFSDGTPF 180 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChh---------hcccCCCCCC
Confidence 55666777777777777777666777777777777773 443333332 222222211 111111110
Q ss_pred --HHHHHHHHHHHHHh--------cc-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc--ccccHHHHHHHHHHHH
Q 003548 223 --EKTLQHIEHAQIVR--------FS-GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAIDHADLITEVADTL 289 (811)
Q Consensus 223 --~~A~~~~~~a~~~~--------~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~ 289 (811)
++...++....... +. .....+.....-+......+..+.|+..++..+.. .+.+.......++.++
T Consensus 181 ad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~ 260 (301)
T TIGR03362 181 ADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLL 260 (301)
T ss_pred CCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHH
Confidence 11122221110000 00 00011222223345556666777777777764332 2222333445566777
Q ss_pred HHcCChHHHHHHHHHHhh
Q 003548 290 MSLGHSNSALKYYHFLET 307 (811)
Q Consensus 290 ~~~g~~~~A~~~~~~~~~ 307 (811)
...|.++-|..+|+.+.+
T Consensus 261 ~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 261 EQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766543
No 480
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=36.69 E-value=6.1e+02 Score=27.89 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHhh-hcccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC--HHHH
Q 003548 241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQ-WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN--GYLY 317 (811)
Q Consensus 241 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 317 (811)
..........+.++.+.|+..+|..++.++- ...+....+.-...+.+.....++..|...+.+.....-+.+ ...|
T Consensus 60 ~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~ 139 (604)
T COG3107 60 EQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYY 139 (604)
T ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHH
Confidence 3344555666788899999999999999976 444444556667778899999999999999987654433443 3344
Q ss_pred HHHHHHHHHhccH
Q 003548 318 LKLAECYLSLKER 330 (811)
Q Consensus 318 ~~la~~~~~~g~~ 330 (811)
...+.+....|+.
T Consensus 140 q~~a~a~ea~~~~ 152 (604)
T COG3107 140 QARADALEARGDS 152 (604)
T ss_pred HHHHHHHhcccch
Confidence 4455555555443
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.58 E-value=4.6e+02 Score=30.68 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003548 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP 65 (811)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 65 (811)
.+...+..|..+...|++.+|++.|+.+|-.-|
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 356678889999999999999999999986544
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.66 E-value=1.3e+02 Score=32.15 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003548 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (811)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (811)
+.+...+..|..++..|++.+|+..|+.+|..
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45566788899999999999999999999875
No 483
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.58 E-value=2.8e+02 Score=25.69 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhccCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 003548 295 SNSALKYYHFLETNAGTD-------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA 367 (811)
Q Consensus 295 ~~~A~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 367 (811)
.+.|+..++.+.+..+.. .--+-.....++.+.|.+++|.+.+++... +|++......|..+-.+...+..-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Q ss_pred HhhcC
Q 003548 368 ITLLS 372 (811)
Q Consensus 368 ~~~~~ 372 (811)
++.|.
T Consensus 164 lqnFS 168 (200)
T cd00280 164 LQNFS 168 (200)
T ss_pred HHhcc
No 484
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.33 E-value=2.3e+02 Score=31.69 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003548 84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160 (811)
Q Consensus 84 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (811)
.+.+....+.-+............-+..+-..|..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 333433333333322233333444455555555555555555555555554 344455555555555555555544
No 485
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.11 E-value=90 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHhcCCCCCchhhhcchhhccc-chHHHHHHHHHHHhhCCCChHHHHHH
Q 003548 629 KHSKFIRYLRAKYKDCVPPIIISGHQFTMAS-HHQDAARCYLEAYKLLPENPLINLCV 685 (811)
Q Consensus 629 ~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~-~y~~A~~~y~~a~~~~p~~p~~~l~l 685 (811)
.-+.||+..... |..+...| ++.+|+.+|.+|+...| +|.-.+.+
T Consensus 85 e~E~~Fl~eV~~-----------GE~L~~~g~~~~ega~hf~nAl~Vc~-qP~~LL~i 130 (148)
T TIGR00985 85 EKEAFFLQEVQL-----------GEELMAQGTNVDEGAVHFYNALKVYP-QPQQLLSI 130 (148)
T ss_pred HHHHHHHHHHHH-----------HHHHHhCCCchHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345666665554 88888888 89999999999999999 58665554
No 486
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.49 E-value=2.8e+02 Score=31.05 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=65.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003548 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123 (811)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 123 (811)
+.+....+.+....+.-+......+...+..+..+-..|..+.|-.+|++.+..+|+ ..++..+..+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 345566777777777666655556677778888888899999999999999998887 677888888999999888888
Q ss_pred HHH
Q 003548 124 YIR 126 (811)
Q Consensus 124 ~~~ 126 (811)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 877
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.93 E-value=1.1e+02 Score=34.65 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHH---HHcCChHHHHHHHHHHhhccCC
Q 003548 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTL---MSLGHSNSALKYYHFLETNAGT 311 (811)
Q Consensus 240 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~~ 311 (811)
+-...++-.++-..|....+|+.-+++.+.+... |. +...+.+..+.++ -.-|+-++|+...-.+++...+
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 3344555556666666666776666666554322 10 0111112222222 2346777788777777766666
Q ss_pred CCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003548 312 DNGYLYLKLAECYLSL---------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA 362 (811)
Q Consensus 312 ~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 362 (811)
-.++.+...|++|..+ +..+.|+++|+++.+..|.- ..-.+++.++...|
T Consensus 276 vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 276 VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAG 334 (1226)
T ss_pred CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhh
Confidence 6777777777776542 45677888888888887743 22234444444444
No 488
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=32.51 E-value=4.9e+02 Score=25.54 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 003548 105 WKQLLTFAVQKGDTAQAMYYIRQAIRA-EP--KDISLRIHLASFYV-EIGDYEKAAESYEQIQKL-FPDNVDATKTGAQL 179 (811)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~ 179 (811)
...+|.+..+.++|++.+.+.+++++. +| -+.+-...+..+|. ..|....+...+..+-.. ......-...+..-
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Q ss_pred HHHcCCHH------HHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcccHH----------HHHHHHHHHHHH----hc
Q 003548 180 FLKCGQTA------RSIGILEEYLKVHPSDADLSV--IDLLVAILMENNAYE----------KTLQHIEHAQIV----RF 237 (811)
Q Consensus 180 ~~~~g~~~------~A~~~~~~~l~~~p~~~~~~~--~~~l~~~~~~~g~~~----------~A~~~~~~a~~~----~~ 237 (811)
|...=.-+ +.+.+++..+--...++...+ +...|..|...-.+. .|...|+.+.+. .+
T Consensus 84 yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~ 163 (244)
T smart00101 84 YRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELP 163 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred cCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhc
Q 003548 238 SGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWK 273 (811)
Q Consensus 238 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 273 (811)
+.+|....+..+.+..+... ++.++|..+.+++...
T Consensus 164 pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 164 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
No 489
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=32.20 E-value=1.2e+02 Score=31.91 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHhh--cCCC---------------chhhHhHHHHHHHh---------chhHHHHHHHHHHHcchhcc
Q 003548 703 QCLAQGFAFLYNNLRL--CEHS---------------QEALYNIARACHHV---------GLVSLAASYYEKVLAIKEKD 756 (811)
Q Consensus 703 ~~~~q~~~~l~~y~~~--~~~~---------------~e~~yn~gr~~~~~---------g~~~~Ai~~YekvL~~~~~~ 756 (811)
..+.+++.++..|.+. .|++ .-++|++||+|..+ +....++.+|+.|.+.-.++
T Consensus 263 ~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~ 342 (371)
T PF12309_consen 263 QLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKH 342 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888777654 2221 45799999999766 77889999999999887654
No 490
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=8.5e+02 Score=28.07 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhc-ccccHHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003548 248 VKAGICYLRLGNMEKAEILFADLQWK-NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326 (811)
Q Consensus 248 ~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 326 (811)
...|.++...|+-++|..+.++++.. +|--...-.+.++.+|.-.|+..--..++.-++.. ..++..-...+|.-+.-
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 34455566666666777776666532 22112223455666666666654444444333321 22222222222222222
Q ss_pred hccHHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHcCCHHHHHhhcCCCCCCCcccCCCCCCChhhhhHHHHHHHHH
Q 003548 327 LKERAHAIMFFYKALDRFEDNIDARL----TLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCH 402 (811)
Q Consensus 327 ~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~ 402 (811)
..+++......+-..+. -|+.+++ .||-++.-.| ..+|+.+++.... +|.+. ....++..+|.
T Consensus 584 ~~dp~~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~-D~~~f---------VRQgAlIa~am 650 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES--YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS-DPVDF---------VRQGALIALAM 650 (929)
T ss_pred ecChhhchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc-ChHHH---------HHHHHHHHHHH
Confidence 34455444444333322 2333333 3444554445 5678888887766 66542 23345666666
Q ss_pred HHHhcC
Q 003548 403 IYRAKG 408 (811)
Q Consensus 403 ~~~~~g 408 (811)
+..++.
T Consensus 651 Im~Q~t 656 (929)
T KOG2062|consen 651 IMIQQT 656 (929)
T ss_pred HHHhcc
Confidence 665554
No 491
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.03 E-value=1.1e+02 Score=31.38 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCChHHHH
Q 003548 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALGNHKSAF 88 (811)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~ 88 (811)
....+..++..|+..+..++++.|...|..+..+. -++.++++..|..++..++.....
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567889999999999999999999999987652 234566777777777766665544
No 492
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=30.79 E-value=1.2e+02 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
+..++.+|...-..|++++|+.+|.++++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666667777777776666654
No 493
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.51 E-value=2.2e+02 Score=23.71 Aligned_cols=45 Identities=24% Similarity=0.151 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 003548 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (811)
Q Consensus 72 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 116 (811)
...|.+....||+..|.+...++.+..+..+-.+..-+.....+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334445555556666665555554443333333333344433333
No 494
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.50 E-value=1.2e+02 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
+..++.+|...-..|++++|+.+|..+++
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666667777777776666654
No 495
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.28 E-value=4.4e+02 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003548 138 LRIHLASFYVEIGDYEKAAESYEQIQKL 165 (811)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 165 (811)
.....|.+.+.+|+-++|.+.++.+...
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3455688888999999999999887654
No 496
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.96 E-value=1.2e+02 Score=19.30 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHhHh
Q 003548 681 INLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLR 717 (811)
Q Consensus 681 ~~l~la~a~~~~~~~r~~~~r~~~~~q~~~~l~~y~~ 717 (811)
..|.+|++++ .+.++. .+.+|+..|.+-.+
T Consensus 3 t~FnyAw~Lv------~S~~~~-d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 3 TQFNYAWGLV------KSNNRE-DQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHH------HSSSHH-HHHHHHHHHHHHCC
T ss_pred chhHHHHHHh------cCCCHH-HHHHHHHHHHHHHh
Confidence 4578899998 444444 35889999987654
No 497
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=29.66 E-value=1.3e+02 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003548 34 VTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (811)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (811)
+..++.+|..+-..|++++|+.+|.++++
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455555555556666666666655543
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.13 E-value=2.8e+02 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCH
Q 003548 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (811)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (811)
.++++-....+--|-.+..+|.+|...|+.+.|...|+.--.+.|++.
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 334443333344556677777788888888888887777777777654
No 499
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.88 E-value=1.2e+02 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.5
Q ss_pred ChHHHHHHHHHHH
Q 003548 83 NHKSAFDFYVIAA 95 (811)
Q Consensus 83 ~~~~A~~~~~~a~ 95 (811)
+..+|..+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555544
No 500
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.77 E-value=5e+02 Score=25.12 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH-HHHHHHHHcCChHHHHHHHHHHHccCCCCHHHHHHHHH
Q 003548 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYN-TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (811)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 110 (811)
|.-...+.+|.-+...+++++|+..+ .+|.....+. .+..++...|+...|+.++ ++..-.....+....+..
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~-~~~~p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYL-RAVGPPLSSPEALTLYFV 149 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHH-HhcCCCCCCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHH
Q 003548 111 FAVQKGDTAQAMYYIRQ 127 (811)
Q Consensus 111 ~~~~~g~~~~A~~~~~~ 127 (811)
+ ...+...+|..+-+.
T Consensus 150 ~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRS 165 (226)
T ss_pred H-HHcCCHHHHHHHHHh
Done!