BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003549
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/805 (67%), Positives = 661/805 (82%), Gaps = 5/805 (0%)
Query: 6 LSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLR 65
++R+ S RER+ +TL RNE+++LLSR A+GKGILQ + +I E + + ++ R+ L
Sbjct: 8 ITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTRKKLE 65
Query: 66 DGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELV 125
GPF +++KS QEAIVLPP+VA+AVRPRPGVWEY+RVN++ L VE+L +E+LHFKEELV
Sbjct: 66 GGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELV 125
Query: 126 DASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLR 185
D N F LELDFEPFNA+ PRP IGNGV FLNRHLS+ +F +K+ L PLL FLR
Sbjct: 126 DGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKFLR 185
Query: 186 AHKYKGHLLMLNDXXXXXXXXXXXXXKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGWGDT 245
H ++G LML++ KAE++L++L +T + +FE + +G E+GWGD
Sbjct: 186 LHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDN 245
Query: 246 AEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQV 305
AE VL+M+ LLLD+L+APDP TLE FLGR+PMVFNVVILSPHGYF Q NVLG PDTGGQV
Sbjct: 246 AERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQV 305
Query: 306 VYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHIL 365
VYILDQVRALE EML RIK+QGL+I P+ILI+TRL+PDA GTTC +RLERV +E+ IL
Sbjct: 306 VYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDIL 365
Query: 366 RVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLL 425
RVPFR+EKGI+R+WISRF+VWPYLET+TED E++ EL G PD IIGNYSDGNLVASLL
Sbjct: 366 RVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLL 425
Query: 426 AYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQE 485
A+K+G+TQCTIAHALEKTKYPDSDIYWKK D+KYHFSCQFTAD+ AMN+ DFIITST+QE
Sbjct: 426 AHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQE 485
Query: 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTA 545
IAG+K TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADM IYFPY+E+++RLT
Sbjct: 486 IAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTK 545
Query: 546 LHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVN 605
H IE+LL+ +N EH+ L D+ KPI+F+MARLD VKN++GLVE YGKN++LREL N
Sbjct: 546 FHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELAN 605
Query: 606 LVVVAGYIDVNK-SKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD 664
LVVV G D K SKD EE AE++KM++L++ YKL+GQFRWI++Q +R RNGELYRYI D
Sbjct: 606 LVVVGG--DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD 663
Query: 665 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAEL 724
TKGAFVQPA YEAFGLTVVEAMTCGLPTFATC GGPAEII HG SGFHIDPYH DQAA+
Sbjct: 664 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADT 723
Query: 725 MADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRET 784
+ADFF KCKE+PSHW +IS GGL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+R E
Sbjct: 724 LADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEA 783
Query: 785 RRYLEMFYILKFRDLVKSVPLASEN 809
RRYLEMFY LK+R L ++VPLA ++
Sbjct: 784 RRYLEMFYALKYRPLAQAVPLAQDD 808
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1093 bits (2828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/809 (66%), Positives = 651/809 (80%), Gaps = 5/809 (0%)
Query: 2 AAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGR 61
A ++R+ S RER+ +TL RNE+++LLSR A+GKGILQ + +I E + + ++ R
Sbjct: 4 AERXITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEAL--PEQTR 61
Query: 62 QNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFK 121
+ L GPF +++KS QEAIVLPP+VA+AVRPRPGVWEY+RVN++ L VE+L +E+LHFK
Sbjct: 62 KKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFK 121
Query: 122 EELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLL 181
EELVD N F LELDFEPFNA+ PRP IGNGV FLNRHLS+ +F +K+ L PLL
Sbjct: 122 EELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLL 181
Query: 182 DFLRAHKYKGHLLMLNDXXXXXXXXXXXXXKAEDHLSKLPPDTPFSQFEYVLQGMGFEKG 241
FLR H ++G L L++ KAE++L++L +T + +FE + +G E+G
Sbjct: 182 KFLRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERG 241
Query: 242 WGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDT 301
WGD AE VL+ + LLLD+L+APDP TLE FLGR+P VFNVVILSPHGYF Q NVLG PDT
Sbjct: 242 WGDNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDT 301
Query: 302 GGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEH 361
GGQVVYILDQVRALE E L RIK+QGL+I P+ILI+TRL+PDA GTTC +RLERV +E+
Sbjct: 302 GGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEY 361
Query: 362 THILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLV 421
ILRVPFR+EKGI+R+WISRF+VWPYLET+TED E++ EL G PD IIGNYSDGNLV
Sbjct: 362 CDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLV 421
Query: 422 ASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITS 481
ASLLA+K+G+TQCTIAHALEKTKYPDSDIYWKK D+KYHFSCQFTAD+ A N+ DFIITS
Sbjct: 422 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITS 481
Query: 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK 541
T+QEIAG+K TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD IYFPY+E+++
Sbjct: 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKR 541
Query: 542 RLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLR 601
RLT H IE+LL+ +N EH+ L D+ KPI+F+ ARLD VKN++GLVE YGKN++LR
Sbjct: 542 RLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLR 601
Query: 602 ELVNLVVVAGYIDVNK-SKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYR 660
EL NLVVV G D K SKD EE AE +K ++L++ YKL+GQFRWI++Q +R RNGELYR
Sbjct: 602 ELANLVVVGG--DRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYR 659
Query: 661 YIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQ 720
YI DTKGAFVQPA YEAFGLTVVEA TCGLPTFATC GGPAEII HG SGFHIDPYH DQ
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719
Query: 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLE 780
AA+ +ADFF KCKE+PSHW +IS GGL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+
Sbjct: 720 AADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLD 779
Query: 781 RRETRRYLEMFYILKFRDLVKSVPLASEN 809
R E RRYLE FY LK+R L ++VPLA ++
Sbjct: 780 RLEARRYLEXFYALKYRPLAQAVPLAQDD 808
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 230/495 (46%), Gaps = 64/495 (12%)
Query: 275 LPMVFNVVILSPHGYFGQANVLGL--PDTGGQVVYILDQVRALENEMLLRIKRQGLDISP 332
+ + +V L+P G F A+ PD GGQ+VY+ E+ L + G+ +
Sbjct: 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGVQVD- 54
Query: 333 KILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETF 392
I+TR I D + ++ T I+R+PF +K ++ + ++WPYL +
Sbjct: 55 ---IITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEY 106
Query: 393 TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIY- 451
+ + E + FP + +Y DG L LL G+ H+L K ++
Sbjct: 107 VNKIINFYREEGK-FPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNT 165
Query: 452 --WKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 509
+K+ DE++ F + A+ + M+ AD II ST QE GQY SH LYR
Sbjct: 166 SNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LYR 212
Query: 510 VVHGIDVFDPKFNIVSPGADMDIY-FPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLS 568
++ D KF+++ PG + ++ Y +K + I + L + +G S
Sbjct: 213 GAVNVED-DDKFSVIPPGVNTRVFDGEYGDK------IKAKITKYL------ERDLG--S 257
Query: 569 DRSK-PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKD-----RE 622
+R + P + + +RLD KN GLVE Y +N +L++ NLV+ I+ N +D +E
Sbjct: 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIE-NPFEDYSRAGQE 316
Query: 623 EIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTV 682
E + K+ EL+ G+ + + G Y Y+A F +FYE FGL
Sbjct: 317 EKEILGKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAP 375
Query: 683 VEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKI 742
VEAM GLP T +GGPAEI++ G G +DP P+ A + F E+ W
Sbjct: 376 VEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF----ESEETWSAY 431
Query: 743 SDGGLKRIYERYTWK 757
+ G +R+ ERYTW+
Sbjct: 432 QEKGKQRVEERYTWQ 446
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYH----PDQAAELMAD 727
E+FGL ++EAM CG+P T GG E+I+HG +G+ + DQA +L+ D
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYH----PDQAAELMAD 727
E+FGL ++EAM CG+P T GG E+I+HG +G+ + DQA +L+ D
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 370
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 78/197 (39%), Gaps = 37/197 (18%)
Query: 523 IVSPGADMDIYFPYSEKQKRL--TALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMAR 580
I+ P D P SEK L T + +E+ DPE KPI+ ++R
Sbjct: 198 IMPPSID-----PLSEKNVELKQTEILRILERFDVDPE-------------KPIITQVSR 239
Query: 581 LDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640
D K + ++E Y K + V L++V V D E EK T +
Sbjct: 240 FDPWKGIFDVIEIYRKVKEKIPGVQLLLVG----VMAHDDPEGWIYFEK------TLRKI 289
Query: 641 GQFRWIAAQTN----RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 696
G+ + TN AR ++ +D +Q + E FGLTV EAM G P
Sbjct: 290 GEDYDVKVLTNLIGVHAREVNAFQRASDV---ILQMSIREGFGLTVTEAMWKGKPVIGRA 346
Query: 697 HGGPAEIIEHGASGFHI 713
GG I G +GF +
Sbjct: 347 VGGIKFQIVDGETGFLV 363
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASG 710
N +++ A T+G + E G+ +EA CG+P A GG E + A+G
Sbjct: 268 NTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTP-ATG 323
Query: 711 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 766
++ D+ +EL+ + ++P + G + ++W+I ERL +
Sbjct: 324 LVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 26/180 (14%)
Query: 535 PYSEKQKRL--TALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 592
P SEK L T + +E+ DPE KPI+ ++R D K + ++E
Sbjct: 205 PLSEKNVELKQTEILRILERFDVDPE-------------KPIITQVSRFDPWKGIFDVIE 251
Query: 593 CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEK-MHELMKTYKLDGQFRWIAAQTN 651
Y K + V L++V V D E EK + ++ + Y + I
Sbjct: 252 IYRKVKEKIPGVQLLLVG----VXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVH-- 305
Query: 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGF 711
AR ++ +D +Q + E FGLTV EA G P GG I G +GF
Sbjct: 306 -AREVNAFQRASDV---ILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASG 710
N +++ A T+G + E G+ +EA CG+P A GG E + A+G
Sbjct: 268 NTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTP-ATG 323
Query: 711 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 766
++ D+ +EL+ + ++P + G + ++W+I ERL +
Sbjct: 324 LVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 37/197 (18%)
Query: 523 IVSPGADMDIYFPYSEKQKRL--TALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMAR 580
I+ P D P SEK L T + +E+ DPE KPI+ ++R
Sbjct: 198 IMPPSID-----PLSEKNVELKQTEILRILERFDVDPE-------------KPIITQVSR 239
Query: 581 LDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640
D K + ++E Y K + V L++V V D E EK T +
Sbjct: 240 FDPWKGIFDVIEIYRKVKEKIPGVQLLLVG----VMAHDDPEGWIYFEK------TLRKI 289
Query: 641 GQFRWIAAQTN----RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 696
G+ + TN AR ++ +D +Q + FGLTV EAM G P
Sbjct: 290 GEDYDVKVLTNLIGVHAREVNAFQRASDV---ILQMSIRAGFGLTVTEAMWKGKPVIGRA 346
Query: 697 HGGPAEIIEHGASGFHI 713
GG I G +GF +
Sbjct: 347 VGGIKFQIVDGETGFLV 363
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 672 PAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729
P+F E+FGL +EA G P A GG + G +G +D + P A+ +A
Sbjct: 312 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL 369
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 672 PAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729
P+F E+FGL +EA G P A GG + G +G +D + P A+ +A
Sbjct: 332 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL 389
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 669 FVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHI-DPYHPDQAAELMAD 727
+ PA+ EA G+ ++EA+T GLP T G A I G I +P+ +Q E++
Sbjct: 274 LLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRK 333
Query: 728 FFGKC------KENPSHWKKISD 744
+ EN H+ D
Sbjct: 334 ALTQSPLRMAWAENARHYADTQD 356
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 672 PAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHI-DPYHPDQAAELMADFFG 730
PA+ EA G+ ++EA+T GLP T G A I G I +P+ +Q E++
Sbjct: 277 PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALT 336
Query: 731 KC------KENPSHWKKISD 744
+ EN H+ D
Sbjct: 337 QSPLRXAWAENARHYADTQD 356
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 42/215 (19%)
Query: 504 LPGLYRVVHGIDV--FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGS---IEQLLFDPE 558
L G+ +V+G+DV +DP K K +TA + + IE + E
Sbjct: 272 LTGITGIVNGMDVSEWDP------------------SKDKYITAKYDATTAIEAKALNKE 313
Query: 559 QNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKS 618
G DR P++ + RL+ K + + + EL+ V + K
Sbjct: 314 ALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMA------AAIPELMQEDVQIVLLGTGKK 367
Query: 619 KDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAF 678
K EK+ + M+ K G+ R + N L I P+ +E
Sbjct: 368 K-------FEKLLKSMEE-KYPGKVRAVVK-----FNAPLAHLIMAGADVLAVPSRFEPC 414
Query: 679 GLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHI 713
GL ++ M G P GG + + G +GFH+
Sbjct: 415 GLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729
+ P+++E FGL +EAM G A+ GG +II + +G + P + A +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 730 GKCKENPSHWKKISDGGLKRIYERYTWKIYSER 762
+ + S +++ K+ ++W+ +ER
Sbjct: 394 ELSRSDLSKFRE----NCKKRAMSFSWEKSAER 422
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729
+ P+++E FGL +EAM G A+ GG +II + +G + P + A +
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 394
Query: 730 GKCKENPSHWKKISDGGLKRIYERYTWKIYSER 762
+ + S +++ K+ ++W+ +ER
Sbjct: 395 ELSRSDLSKFRE----NCKKRAMSFSWEKSAER 423
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729
+ P+++E FGL +EAM G A+ GG +II + +G + P + A +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 730 GKCKENPSHWKKISDGGLKRIYERYTWKIYSER 762
+ + S +++ K+ ++W+ +ER
Sbjct: 394 ELSRSDLSKFRE----NCKKRAMSFSWEKSAER 422
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAA 722
+ P+++E FGL +EAM G A+ GG +II + +G + P + A
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELA 171
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKEN 735
E FGLT +EA G P A GG E + + +G+ ++ E++ D K +N
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNA----DVNEII-DAXKKVSKN 162
Query: 736 PSHWKK 741
P +KK
Sbjct: 163 PDKFKK 168
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 25/157 (15%)
Query: 243 GDTAE--HVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPD 300
GD AE +L + L+ ++ +LE + + + V+ P G NV +
Sbjct: 423 GDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQG--NNTNVFSI-G 479
Query: 301 TGGQVVYIL---DQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357
TG Y++ A+ + L++ K+ G D+ P I + +I
Sbjct: 480 TGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI---------------- 523
Query: 358 GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTE 394
+T R + +EKG++ + + +V PY++ FTE
Sbjct: 524 -QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 12 IRERVEDTLSVHRNELVSLLSRYVAQGKGILQP 44
I+E+V+D L+V EL+ L Y A+ K +++P
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEP 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,932,675
Number of Sequences: 62578
Number of extensions: 1094204
Number of successful extensions: 2151
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2116
Number of HSP's gapped (non-prelim): 31
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)