Query 003550
Match_columns 811
No_of_seqs 428 out of 2862
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 01:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 2.5E-63 5.4E-68 529.5 29.4 299 92-391 1-299 (299)
2 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 5.5E-56 1.2E-60 473.2 27.3 278 408-707 1-298 (299)
3 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 1.3E-52 2.9E-57 454.4 28.5 300 408-708 1-300 (300)
4 cd08571 GDPD_SHV3_plant Glycer 100.0 6.6E-52 1.4E-56 449.1 27.5 296 408-708 1-302 (302)
5 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 2E-49 4.3E-54 431.0 27.2 287 408-702 1-309 (309)
6 cd08571 GDPD_SHV3_plant Glycer 100.0 2.2E-49 4.8E-54 429.4 25.2 283 92-391 1-302 (302)
7 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 1.1E-48 2.4E-53 425.1 27.4 285 92-385 1-309 (309)
8 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.2E-47 2.6E-52 421.5 24.7 303 402-709 11-354 (356)
9 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1.1E-46 2.5E-51 411.0 26.4 284 408-703 1-318 (318)
10 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 9.5E-47 2.1E-51 408.7 25.5 280 92-391 1-300 (300)
11 PRK11143 glpQ glycerophosphodi 100.0 1.5E-46 3.2E-51 414.3 27.2 297 403-711 22-353 (355)
12 cd08559 GDPD_periplasmic_GlpQ_ 100.0 1.9E-46 4.1E-51 406.5 25.2 279 408-702 1-296 (296)
13 PRK11143 glpQ glycerophosphodi 100.0 1.1E-45 2.3E-50 407.5 27.8 290 89-393 24-352 (355)
14 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.9E-45 4.2E-50 404.0 27.2 293 90-394 15-356 (356)
15 cd08600 GDPD_EcGlpQ_like Glyce 100.0 2.4E-45 5.1E-50 400.6 26.8 279 92-386 1-318 (318)
16 cd08559 GDPD_periplasmic_GlpQ_ 100.0 4.5E-44 9.7E-49 388.0 25.1 274 92-385 1-296 (296)
17 cd08601 GDPD_SaGlpQ_like Glyce 100.0 5.9E-44 1.3E-48 379.6 23.5 250 409-709 2-255 (256)
18 cd08580 GDPD_Rv2277c_like Glyc 100.0 6.2E-44 1.3E-48 378.6 16.0 238 408-704 1-262 (263)
19 cd08581 GDPD_like_1 Glyceropho 100.0 7.2E-43 1.6E-47 365.0 22.7 228 410-702 1-229 (229)
20 cd08612 GDPD_GDE4 Glycerophosp 100.0 1.3E-42 2.9E-47 377.2 25.3 254 405-710 24-299 (300)
21 PRK09454 ugpQ cytoplasmic glyc 100.0 3.7E-42 8E-47 364.3 24.2 238 406-709 6-246 (249)
22 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 4E-42 8.6E-47 364.5 21.6 243 407-701 1-252 (252)
23 cd08562 GDPD_EcUgpQ_like Glyce 100.0 7.2E-42 1.6E-46 357.2 23.0 228 410-702 1-229 (229)
24 cd08565 GDPD_pAtGDE_like Glyce 100.0 4E-42 8.6E-47 360.8 21.0 231 410-705 1-234 (235)
25 cd08563 GDPD_TtGDE_like Glycer 100.0 1.6E-41 3.4E-46 355.4 23.0 229 408-702 1-230 (230)
26 cd08568 GDPD_TmGDE_like Glycer 100.0 1.8E-41 4E-46 354.0 21.2 223 409-704 1-225 (226)
27 cd08608 GDPD_GDE2 Glycerophosp 100.0 2.2E-41 4.9E-46 370.8 22.8 251 407-709 1-260 (351)
28 cd08579 GDPD_memb_like Glycero 100.0 1.5E-41 3.4E-46 353.1 20.4 219 410-702 1-220 (220)
29 cd08580 GDPD_Rv2277c_like Glyc 100.0 4.2E-41 9.1E-46 357.0 24.0 246 92-387 1-262 (263)
30 cd08564 GDPD_GsGDE_like Glycer 100.0 3.4E-41 7.5E-46 360.2 23.1 252 406-709 2-264 (265)
31 cd08575 GDPD_GDE4_like Glycero 100.0 8.2E-42 1.8E-46 364.6 17.4 248 408-704 1-263 (264)
32 cd08610 GDPD_GDE6 Glycerophosp 100.0 2.7E-41 5.8E-46 366.4 21.3 255 403-709 18-282 (316)
33 cd08582 GDPD_like_2 Glyceropho 100.0 5E-41 1.1E-45 352.2 22.3 229 410-703 1-232 (233)
34 cd08573 GDPD_GDE1 Glycerophosp 100.0 9.2E-41 2E-45 355.1 24.3 232 410-701 1-257 (258)
35 cd08601 GDPD_SaGlpQ_like Glyce 100.0 5.2E-41 1.1E-45 357.0 21.7 237 93-392 2-255 (256)
36 cd08609 GDPD_GDE3 Glycerophosp 100.0 7.6E-41 1.6E-45 363.1 22.9 252 407-712 26-285 (315)
37 cd08606 GDPD_YPL110cp_fungi Gl 100.0 1.6E-40 3.6E-45 358.8 23.8 257 408-710 2-285 (286)
38 cd08572 GDPD_GDE5_like Glycero 100.0 1.4E-40 3E-45 359.8 22.0 260 409-702 1-293 (293)
39 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 2E-40 4.4E-45 351.4 21.5 232 91-383 1-251 (252)
40 cd08570 GDPD_YPL206cp_fungi Gl 100.0 6E-40 1.3E-44 344.3 24.4 229 410-702 1-234 (234)
41 cd08567 GDPD_SpGDE_like Glycer 100.0 2.7E-40 5.9E-45 352.5 21.3 253 409-703 2-262 (263)
42 cd08607 GDPD_GDE5 Glycerophosp 100.0 3.6E-40 7.8E-45 356.8 22.1 261 409-702 1-290 (290)
43 cd08610 GDPD_GDE6 Glycerophosp 100.0 2.7E-40 5.8E-45 358.7 20.5 248 88-395 19-285 (316)
44 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1E-39 2.2E-44 345.7 23.4 243 410-708 1-248 (249)
45 cd08612 GDPD_GDE4 Glycerophosp 100.0 1E-39 2.2E-44 354.6 23.6 257 87-392 22-298 (300)
46 cd08566 GDPD_AtGDE_like Glycer 100.0 1.4E-39 3E-44 342.7 23.2 236 409-702 1-240 (240)
47 cd08609 GDPD_GDE3 Glycerophosp 100.0 4.7E-40 1E-44 356.9 20.0 246 91-398 26-288 (315)
48 cd08605 GDPD_GDE5_like_1_plant 100.0 9.5E-40 2.1E-44 352.2 21.9 253 410-702 2-282 (282)
49 cd08581 GDPD_like_1 Glyceropho 100.0 1.1E-39 2.5E-44 340.9 21.6 222 94-385 1-229 (229)
50 PRK09454 ugpQ cytoplasmic glyc 100.0 2.9E-39 6.2E-44 342.2 23.9 231 91-391 7-245 (249)
51 cd08608 GDPD_GDE2 Glycerophosp 100.0 8.9E-40 1.9E-44 358.2 20.5 241 91-393 1-261 (351)
52 cd08562 GDPD_EcUgpQ_like Glyce 100.0 7.1E-39 1.5E-43 334.7 23.3 223 94-385 1-229 (229)
53 cd08575 GDPD_GDE4_like Glycero 100.0 1.7E-39 3.6E-44 346.8 18.5 241 92-388 1-264 (264)
54 cd08565 GDPD_pAtGDE_like Glyce 100.0 5E-39 1.1E-43 337.4 20.6 228 94-388 1-234 (235)
55 cd08582 GDPD_like_2 Glyceropho 100.0 2.5E-38 5.5E-43 331.8 23.0 225 94-386 1-232 (233)
56 cd08563 GDPD_TtGDE_like Glycer 100.0 3.6E-38 7.8E-43 330.0 23.2 224 92-385 1-230 (230)
57 cd08568 GDPD_TmGDE_like Glycer 100.0 2.6E-38 5.6E-43 330.3 21.9 220 93-387 1-225 (226)
58 cd08564 GDPD_GsGDE_like Glycer 100.0 2.2E-38 4.8E-43 338.5 21.5 243 90-392 2-264 (265)
59 cd08579 GDPD_memb_like Glycero 100.0 2.2E-38 4.8E-43 329.4 19.8 215 94-385 1-220 (220)
60 cd08572 GDPD_GDE5_like Glycero 100.0 6.1E-38 1.3E-42 339.2 22.9 257 93-385 1-293 (293)
61 cd08573 GDPD_GDE1 Glycerophosp 100.0 9.7E-38 2.1E-42 332.0 21.8 231 94-384 1-257 (258)
62 cd08607 GDPD_GDE5 Glycerophosp 100.0 1.7E-37 3.7E-42 335.9 23.3 256 93-385 1-290 (290)
63 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.3E-37 2.9E-42 329.6 21.5 240 94-391 1-248 (249)
64 cd08567 GDPD_SpGDE_like Glycer 100.0 2.5E-37 5.3E-42 329.7 22.1 242 93-387 2-263 (263)
65 cd08585 GDPD_like_3 Glyceropho 100.0 2E-37 4.4E-42 325.4 21.1 224 408-699 4-236 (237)
66 cd08570 GDPD_YPL206cp_fungi Gl 100.0 2.4E-37 5.1E-42 324.7 21.5 218 94-385 1-234 (234)
67 COG0584 UgpQ Glycerophosphoryl 100.0 3.8E-37 8.3E-42 327.3 22.6 247 407-710 5-255 (257)
68 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 5.4E-37 1.2E-41 322.6 23.4 231 410-703 1-236 (237)
69 cd08606 GDPD_YPL110cp_fungi Gl 100.0 4.6E-37 1E-41 331.9 22.7 252 92-393 2-285 (286)
70 cd08566 GDPD_AtGDE_like Glycer 100.0 7.1E-37 1.5E-41 322.1 21.4 231 93-385 1-240 (240)
71 PF03009 GDPD: Glycerophosphor 100.0 2.6E-36 5.6E-41 317.5 20.4 248 413-704 1-256 (256)
72 cd08605 GDPD_GDE5_like_1_plant 100.0 4.7E-36 1E-40 323.4 22.3 245 94-385 2-282 (282)
73 KOG2258 Glycerophosphoryl dies 100.0 1.3E-37 2.8E-42 341.3 8.1 335 334-718 2-338 (341)
74 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.1E-35 2.5E-40 317.9 21.7 242 403-705 19-307 (309)
75 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.9E-35 4.2E-40 316.1 21.8 259 81-388 13-307 (309)
76 COG0584 UgpQ Glycerophosphoryl 100.0 1.5E-34 3.2E-39 307.6 22.0 242 91-393 5-255 (257)
77 cd08585 GDPD_like_3 Glyceropho 100.0 1.6E-34 3.4E-39 303.5 20.9 226 92-382 4-236 (237)
78 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 4.1E-34 8.8E-39 300.8 20.8 224 94-386 1-236 (237)
79 PF03009 GDPD: Glycerophosphor 100.0 1.6E-33 3.4E-38 296.3 17.4 239 97-387 1-256 (256)
80 cd08556 GDPD Glycerophosphodie 100.0 9.5E-33 2.1E-37 278.8 19.2 188 410-701 1-189 (189)
81 cd08556 GDPD Glycerophosphodie 100.0 1.3E-29 2.8E-34 255.9 19.7 185 94-384 1-189 (189)
82 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 1.3E-29 2.9E-34 255.3 17.3 174 410-701 1-179 (179)
83 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 1.9E-27 4.2E-32 239.6 17.0 165 94-384 1-179 (179)
84 cd08578 GDPD_NUC-2_fungi Putat 99.9 1.8E-25 3.9E-30 240.6 19.1 236 424-701 17-296 (300)
85 cd08578 GDPD_NUC-2_fungi Putat 99.9 4.6E-21 1E-25 206.5 19.1 227 108-384 17-296 (300)
86 KOG2258 Glycerophosphoryl dies 99.8 3.4E-21 7.4E-26 211.8 8.9 254 91-393 68-330 (341)
87 cd08584 PI-PLCc_GDPD_SF_unchar 99.8 5.7E-19 1.2E-23 176.7 14.5 186 410-704 1-191 (192)
88 cd08584 PI-PLCc_GDPD_SF_unchar 99.8 2.2E-17 4.9E-22 165.3 17.7 187 94-388 1-192 (192)
89 cd08577 PI-PLCc_GDPD_SF_unchar 99.2 6.4E-11 1.4E-15 123.7 11.5 213 411-701 4-228 (228)
90 cd08576 GDPD_like_SMaseD_PLD G 99.2 7.9E-10 1.7E-14 116.6 17.8 222 410-714 2-251 (265)
91 cd08577 PI-PLCc_GDPD_SF_unchar 99.0 1.6E-09 3.4E-14 113.3 12.3 196 112-384 15-228 (228)
92 cd08576 GDPD_like_SMaseD_PLD G 99.0 4.6E-09 9.9E-14 110.9 12.8 223 94-394 2-248 (265)
93 PF13653 GDPD_2: Glycerophosph 98.1 2.7E-06 5.9E-11 59.6 2.7 30 660-703 1-30 (30)
94 PF13653 GDPD_2: Glycerophosph 97.9 3.7E-06 8E-11 59.0 1.4 30 342-386 1-30 (30)
95 cd08592 PI-PLCc_gamma Catalyti 97.9 1.2E-05 2.6E-10 83.3 4.9 53 408-460 12-67 (229)
96 cd08627 PI-PLCc_gamma1 Catalyt 97.7 3.8E-05 8.2E-10 79.4 5.2 52 409-460 13-67 (229)
97 cd08592 PI-PLCc_gamma Catalyti 97.7 4.7E-05 1E-09 79.0 5.4 44 101-146 24-67 (229)
98 KOG2421 Predicted starch-bindi 97.6 1.2E-05 2.6E-10 91.3 -1.0 62 402-463 319-387 (417)
99 cd08627 PI-PLCc_gamma1 Catalyt 97.5 0.00012 2.7E-09 75.6 5.4 43 102-146 25-67 (229)
100 cd08597 PI-PLCc_PRIP_metazoa C 97.0 0.00053 1.1E-08 72.7 4.2 51 409-459 13-66 (260)
101 smart00148 PLCXc Phospholipase 96.8 0.0049 1.1E-07 59.5 8.5 43 101-145 23-65 (135)
102 KOG2421 Predicted starch-bindi 96.8 0.00015 3.3E-09 82.3 -2.2 58 90-149 323-387 (417)
103 cd08597 PI-PLCc_PRIP_metazoa C 96.7 0.0017 3.6E-08 69.0 4.8 42 102-145 25-66 (260)
104 smart00148 PLCXc Phospholipase 96.7 0.0022 4.8E-08 61.8 4.9 43 417-459 23-65 (135)
105 PF10223 DUF2181: Uncharacteri 94.9 0.79 1.7E-05 48.6 15.1 201 422-706 11-242 (244)
106 cd08594 PI-PLCc_eta Catalytic 94.6 0.035 7.7E-07 57.7 4.3 50 410-459 14-66 (227)
107 cd08633 PI-PLCc_eta2 Catalytic 94.4 0.047 1E-06 57.7 4.7 51 409-459 13-66 (254)
108 cd08599 PI-PLCc_plant Catalyti 94.3 0.061 1.3E-06 56.2 5.2 54 406-459 10-66 (228)
109 cd08596 PI-PLCc_epsilon Cataly 94.2 0.055 1.2E-06 57.3 4.7 50 410-459 14-66 (254)
110 cd08632 PI-PLCc_eta1 Catalytic 94.2 0.055 1.2E-06 57.1 4.6 50 410-459 14-66 (253)
111 cd08631 PI-PLCc_delta4 Catalyt 94.2 0.055 1.2E-06 57.5 4.6 50 410-459 14-66 (258)
112 cd08595 PI-PLCc_zeta Catalytic 94.2 0.053 1.1E-06 57.5 4.5 50 410-459 14-66 (257)
113 cd08558 PI-PLCc_eukaryota Cata 94.1 0.057 1.2E-06 56.3 4.5 50 410-459 14-66 (226)
114 cd08594 PI-PLCc_eta Catalytic 94.0 0.068 1.5E-06 55.7 4.8 42 102-145 25-66 (227)
115 cd08630 PI-PLCc_delta3 Catalyt 94.0 0.067 1.4E-06 56.9 4.7 51 409-459 13-66 (258)
116 cd08629 PI-PLCc_delta1 Catalyt 93.8 0.073 1.6E-06 56.5 4.7 50 410-459 14-66 (258)
117 cd08628 PI-PLCc_gamma2 Catalyt 93.8 0.07 1.5E-06 56.6 4.5 51 409-459 13-66 (254)
118 cd08599 PI-PLCc_plant Catalyti 93.7 0.1 2.2E-06 54.6 5.4 42 102-145 25-66 (228)
119 cd08593 PI-PLCc_delta Catalyti 93.7 0.077 1.7E-06 56.5 4.5 50 410-459 14-66 (257)
120 cd08633 PI-PLCc_eta2 Catalytic 93.5 0.096 2.1E-06 55.4 4.8 42 102-145 25-66 (254)
121 cd08598 PI-PLC1c_yeast Catalyt 93.5 0.095 2.1E-06 54.9 4.7 51 409-459 13-66 (231)
122 cd08626 PI-PLCc_beta4 Catalyti 93.2 0.1 2.2E-06 55.4 4.7 51 409-459 13-68 (257)
123 cd08628 PI-PLCc_gamma2 Catalyt 93.1 0.12 2.6E-06 54.8 4.9 41 103-145 26-66 (254)
124 cd08632 PI-PLCc_eta1 Catalytic 93.1 0.12 2.6E-06 54.6 4.8 42 102-145 25-66 (253)
125 cd08596 PI-PLCc_epsilon Cataly 93.0 0.12 2.7E-06 54.7 4.9 42 102-145 25-66 (254)
126 cd08595 PI-PLCc_zeta Catalytic 93.0 0.12 2.6E-06 55.0 4.7 42 102-145 25-66 (257)
127 cd08558 PI-PLCc_eukaryota Cata 93.0 0.14 2.9E-06 53.6 5.1 42 102-145 25-66 (226)
128 cd08631 PI-PLCc_delta4 Catalyt 93.0 0.12 2.7E-06 54.8 4.8 42 102-145 25-66 (258)
129 cd08624 PI-PLCc_beta2 Catalyti 93.0 0.12 2.6E-06 55.0 4.6 51 410-460 14-69 (261)
130 cd08623 PI-PLCc_beta1 Catalyti 92.8 0.13 2.8E-06 54.7 4.6 50 410-459 14-68 (258)
131 cd08630 PI-PLCc_delta3 Catalyt 92.8 0.14 3E-06 54.6 4.7 42 102-145 25-66 (258)
132 cd08629 PI-PLCc_delta1 Catalyt 92.6 0.16 3.4E-06 54.0 4.8 42 102-145 25-66 (258)
133 cd08593 PI-PLCc_delta Catalyti 92.5 0.15 3.3E-06 54.3 4.7 42 102-145 25-66 (257)
134 cd08598 PI-PLC1c_yeast Catalyt 92.3 0.18 3.9E-06 52.8 4.9 42 102-145 25-66 (231)
135 cd08591 PI-PLCc_beta Catalytic 92.2 0.15 3.2E-06 54.2 4.1 50 410-459 14-68 (257)
136 cd08626 PI-PLCc_beta4 Catalyti 92.2 0.17 3.7E-06 53.7 4.6 42 102-145 25-68 (257)
137 PF10223 DUF2181: Uncharacteri 91.6 9.5 0.00021 40.6 16.7 36 106-143 11-52 (244)
138 cd08625 PI-PLCc_beta3 Catalyti 91.4 0.25 5.3E-06 52.8 4.8 51 409-459 13-68 (258)
139 cd08624 PI-PLCc_beta2 Catalyti 91.4 0.23 5.1E-06 52.8 4.6 42 102-145 25-68 (261)
140 cd08623 PI-PLCc_beta1 Catalyti 91.3 0.25 5.3E-06 52.6 4.6 42 102-145 25-68 (258)
141 cd08591 PI-PLCc_beta Catalytic 90.9 0.29 6.3E-06 52.1 4.6 42 102-145 25-68 (257)
142 KOG1264 Phospholipase C [Lipid 90.8 0.19 4E-06 59.9 3.3 51 410-460 321-374 (1267)
143 PF04309 G3P_antiterm: Glycero 90.7 0.71 1.5E-05 46.5 7.0 144 522-705 28-174 (175)
144 cd08625 PI-PLCc_beta3 Catalyti 89.8 0.39 8.5E-06 51.3 4.5 43 101-145 24-68 (258)
145 KOG1264 Phospholipase C [Lipid 89.3 0.27 5.9E-06 58.5 3.1 46 102-151 332-377 (1267)
146 PLN02230 phosphoinositide phos 87.0 0.8 1.7E-05 54.5 5.1 56 406-461 123-181 (598)
147 PLN02230 phosphoinositide phos 83.7 1.3 2.7E-05 52.8 4.7 50 94-145 127-179 (598)
148 PLN02228 Phosphoinositide phos 83.0 1.5 3.2E-05 52.0 4.9 55 407-461 115-173 (567)
149 PLN02591 tryptophan synthase 82.7 11 0.00024 40.3 11.0 193 421-699 15-217 (250)
150 COG1954 GlpP Glycerol-3-phosph 82.5 26 0.00056 35.2 12.4 141 522-702 32-175 (181)
151 KOG0169 Phosphoinositide-speci 82.3 1.6 3.4E-05 52.4 4.7 58 403-460 294-354 (746)
152 PLN02952 phosphoinositide phos 82.0 1.7 3.6E-05 51.9 4.8 57 405-461 130-190 (599)
153 COG5016 Pyruvate/oxaloacetate 81.1 3.5 7.5E-05 46.3 6.5 159 258-444 65-233 (472)
154 COG1830 FbaB DhnA-type fructos 80.2 13 0.00028 39.8 10.2 183 240-439 47-234 (265)
155 KOG1924 RhoA GTPase effector D 77.5 5.5 0.00012 47.9 7.0 17 694-710 483-499 (1102)
156 PLN02228 Phosphoinositide phos 77.3 2.6 5.7E-05 49.9 4.5 50 94-145 118-171 (567)
157 PLN02223 phosphoinositide phos 76.7 2.9 6.4E-05 49.0 4.6 55 406-460 114-172 (537)
158 PLN02222 phosphoinositide phos 75.5 3.4 7.4E-05 49.2 4.7 57 405-461 110-170 (581)
159 cd00137 PI-PLCc Catalytic doma 74.7 3.6 7.8E-05 44.6 4.4 40 420-459 32-71 (274)
160 PLN02952 phosphoinositide phos 74.2 3.7 8.1E-05 49.0 4.7 50 94-145 135-188 (599)
161 PRK13111 trpA tryptophan synth 73.4 56 0.0012 35.1 13.0 151 406-601 10-168 (258)
162 PF04309 G3P_antiterm: Glycero 72.7 11 0.00023 38.2 6.8 59 646-712 32-91 (175)
163 PF00388 PI-PLC-X: Phosphatidy 72.5 3.8 8.2E-05 39.8 3.6 40 420-459 24-63 (146)
164 TIGR00262 trpA tryptophan synt 72.0 37 0.0008 36.4 11.2 211 404-698 6-225 (256)
165 KOG0169 Phosphoinositide-speci 70.9 3.8 8.3E-05 49.3 3.7 41 103-145 313-353 (746)
166 COG0113 HemB Delta-aminolevuli 69.7 21 0.00045 38.9 8.4 136 561-711 176-329 (330)
167 cd04724 Tryptophan_synthase_al 69.1 25 0.00054 37.3 9.1 24 422-445 14-37 (242)
168 KOG1924 RhoA GTPase effector D 68.0 9.9 0.00021 45.9 6.1 15 742-756 541-555 (1102)
169 PLN02222 phosphoinositide phos 67.5 6 0.00013 47.1 4.4 50 94-145 115-168 (581)
170 PLN02223 phosphoinositide phos 64.6 7.4 0.00016 45.8 4.3 41 103-145 130-171 (537)
171 PF00388 PI-PLC-X: Phosphatidy 63.6 19 0.00042 34.8 6.5 40 104-145 24-63 (146)
172 COG1242 Predicted Fe-S oxidore 62.3 38 0.00082 36.6 8.6 129 522-711 97-235 (312)
173 COG2200 Rtn c-di-GMP phosphodi 60.9 60 0.0013 34.7 10.2 40 648-701 196-235 (256)
174 cd00958 DhnA Class I fructose- 59.9 45 0.00097 34.9 8.9 99 330-440 112-212 (235)
175 cd00137 PI-PLCc Catalytic doma 59.1 14 0.0003 40.1 5.0 41 103-145 31-71 (274)
176 COG2200 Rtn c-di-GMP phosphodi 54.2 24 0.00052 37.7 5.8 44 330-388 196-242 (256)
177 cd00384 ALAD_PBGS Porphobilino 51.9 45 0.00098 36.5 7.3 133 561-708 163-313 (314)
178 cd04823 ALAD_PBGS_aspartate_ri 51.7 48 0.001 36.5 7.4 134 561-709 168-319 (320)
179 KOG1265 Phospholipase C [Lipid 51.6 19 0.00041 44.3 4.7 89 370-460 283-381 (1189)
180 COG1830 FbaB DhnA-type fructos 49.7 18 0.0004 38.7 3.9 64 646-709 131-195 (265)
181 PRK09250 fructose-bisphosphate 48.8 86 0.0019 35.2 9.0 191 239-439 94-315 (348)
182 PRK09283 delta-aminolevulinic 48.7 56 0.0012 36.0 7.4 134 561-709 171-322 (323)
183 cd04824 eu_ALAD_PBGS_cysteine_ 47.7 53 0.0011 36.1 7.0 134 561-708 167-319 (320)
184 PF02638 DUF187: Glycosyl hydr 45.5 15 0.00032 40.6 2.6 18 330-347 73-90 (311)
185 PRK06852 aldolase; Validated 45.4 1E+02 0.0023 33.9 9.0 184 240-440 63-263 (304)
186 cd08589 PI-PLCc_SaPLC1_like Ca 42.7 29 0.00064 38.4 4.3 27 422-448 44-70 (324)
187 PRK12330 oxaloacetate decarbox 42.6 3.6E+02 0.0079 31.9 13.4 165 252-445 58-235 (499)
188 PF03932 CutC: CutC family; I 42.2 1E+02 0.0023 31.8 8.0 145 255-426 36-186 (201)
189 PRK12331 oxaloacetate decarbox 41.7 3.5E+02 0.0076 31.6 13.1 97 330-444 126-231 (448)
190 PRK13561 putative diguanylate 41.7 1.1E+02 0.0025 37.0 9.6 40 648-701 594-633 (651)
191 PRK12738 kbaY tagatose-bisphos 41.4 3.6E+02 0.0079 29.5 12.4 116 524-664 3-134 (286)
192 PF10566 Glyco_hydro_97: Glyco 40.3 33 0.00072 37.1 4.2 55 648-704 76-130 (273)
193 PRK13384 delta-aminolevulinic 40.2 70 0.0015 35.2 6.5 132 561-707 173-321 (322)
194 PRK05835 fructose-bisphosphate 39.8 3.9E+02 0.0084 29.6 12.3 116 524-664 2-134 (307)
195 PRK07998 gatY putative fructos 39.5 3.1E+02 0.0067 30.0 11.4 148 524-697 3-170 (283)
196 TIGR01858 tag_bisphos_ald clas 39.2 3.9E+02 0.0085 29.2 12.2 115 525-664 2-132 (282)
197 cd00945 Aldolase_Class_I Class 38.5 55 0.0012 32.6 5.3 66 363-441 16-84 (201)
198 PRK12581 oxaloacetate decarbox 38.0 2.3E+02 0.005 33.2 10.8 160 256-444 70-240 (468)
199 PRK12737 gatY tagatose-bisphos 37.4 4.5E+02 0.0098 28.7 12.3 116 524-664 3-134 (284)
200 PF05399 EVI2A: Ectropic viral 37.2 99 0.0022 32.0 6.6 23 788-810 126-148 (227)
201 COG4943 Predicted signal trans 37.0 1.3E+02 0.0029 35.0 8.4 137 527-695 341-494 (524)
202 TIGR01212 radical SAM protein, 36.8 2E+02 0.0044 31.5 9.8 61 524-597 93-158 (302)
203 PRK08227 autoinducer 2 aldolas 36.7 49 0.0011 35.7 4.8 85 619-710 100-189 (264)
204 PRK11059 regulatory protein Cs 35.7 2.5E+02 0.0054 34.1 11.3 40 648-701 593-632 (640)
205 PRK09250 fructose-bisphosphate 35.2 44 0.00094 37.4 4.1 135 564-709 95-246 (348)
206 PRK08227 autoinducer 2 aldolas 35.1 1.6E+02 0.0034 31.9 8.3 158 258-440 62-224 (264)
207 TIGR03151 enACPred_II putative 33.6 1.8E+02 0.0039 32.1 8.7 85 330-443 99-191 (307)
208 PF06679 DUF1180: Protein of u 33.5 1.2E+02 0.0026 30.3 6.5 8 757-764 45-52 (163)
209 PRK14042 pyruvate carboxylase 33.4 4.3E+02 0.0093 32.1 12.3 163 256-448 61-235 (596)
210 PF07021 MetW: Methionine bios 33.3 51 0.0011 33.9 4.0 35 410-444 31-65 (193)
211 KOG2794 Delta-aminolevulinic a 32.4 2E+02 0.0043 31.1 8.1 135 561-710 184-337 (340)
212 cd01948 EAL EAL domain. This d 32.3 2.6E+02 0.0055 28.5 9.3 135 542-701 85-231 (240)
213 PRK11572 copper homeostasis pr 32.1 2.1E+02 0.0044 30.7 8.4 153 255-439 37-195 (248)
214 PF03102 NeuB: NeuB family; I 31.3 3.1E+02 0.0067 29.2 9.6 140 238-448 58-207 (241)
215 KOG1265 Phospholipase C [Lipid 31.3 54 0.0012 40.5 4.3 43 105-151 340-384 (1189)
216 PF01116 F_bP_aldolase: Fructo 30.8 3.4E+02 0.0075 29.6 10.2 146 526-697 4-172 (287)
217 COG0826 Collagenase and relate 30.4 1.5E+02 0.0032 33.4 7.4 57 648-709 52-108 (347)
218 KOG1923 Rac1 GTPase effector F 29.9 92 0.002 38.0 5.8 23 739-761 279-301 (830)
219 PF10566 Glyco_hydro_97: Glyco 29.5 35 0.00077 37.0 2.2 119 330-461 76-201 (273)
220 PRK15452 putative protease; Pr 29.4 1.1E+02 0.0024 35.7 6.3 55 648-710 49-106 (443)
221 cd00947 TBP_aldolase_IIB Tagat 29.3 6.2E+02 0.013 27.6 11.7 89 561-664 25-129 (276)
222 PRK00208 thiG thiazole synthas 28.7 1.7E+02 0.0038 31.2 7.1 38 330-382 110-150 (250)
223 COG1954 GlpP Glycerol-3-phosph 28.4 2.9E+02 0.0063 27.9 8.1 51 648-711 38-94 (181)
224 cd04728 ThiG Thiazole synthase 28.4 1.8E+02 0.0038 31.2 7.0 44 324-382 103-150 (248)
225 cd08590 PI-PLCc_Rv2075c_like C 28.2 52 0.0011 35.6 3.3 35 422-457 41-75 (267)
226 PRK14040 oxaloacetate decarbox 27.6 5.5E+02 0.012 31.2 12.0 157 257-443 63-231 (593)
227 cd02071 MM_CoA_mut_B12_BD meth 27.4 2.4E+02 0.0052 26.3 7.3 51 648-710 68-121 (122)
228 PF10717 ODV-E18: Occlusion-de 27.4 79 0.0017 27.9 3.5 22 789-810 19-40 (85)
229 PRK05718 keto-hydroxyglutarate 27.3 7.3E+02 0.016 25.8 12.6 131 527-705 5-139 (212)
230 PRK07709 fructose-bisphosphate 26.7 7.2E+02 0.016 27.2 11.7 149 524-698 3-174 (285)
231 PLN02746 hydroxymethylglutaryl 26.7 1.7E+02 0.0037 32.9 7.0 97 331-443 166-274 (347)
232 PRK13399 fructose-1,6-bisphosp 26.6 6.3E+02 0.014 28.5 11.4 118 524-664 3-142 (347)
233 PF06072 Herpes_US9: Alphaherp 26.4 1.2E+02 0.0027 25.0 4.2 22 22-43 4-25 (60)
234 PRK06852 aldolase; Validated 26.4 3.8E+02 0.0082 29.7 9.5 61 647-710 156-226 (304)
235 PRK13561 putative diguanylate 25.9 2.9E+02 0.0064 33.4 9.6 50 330-394 594-646 (651)
236 PRK12857 fructose-1,6-bisphosp 25.6 9.1E+02 0.02 26.4 13.3 116 524-664 3-134 (284)
237 cd00331 IGPS Indole-3-glycerol 25.5 7.4E+02 0.016 25.3 11.4 126 218-383 11-148 (217)
238 PRK09196 fructose-1,6-bisphosp 25.5 9.7E+02 0.021 27.0 12.6 118 524-664 3-142 (347)
239 PF07462 MSP1_C: Merozoite sur 25.4 1.4E+02 0.0031 35.1 6.1 9 691-699 216-224 (574)
240 cd08589 PI-PLCc_SaPLC1_like Ca 25.3 1.1E+02 0.0024 34.0 5.2 43 105-149 43-105 (324)
241 PF09370 TIM-br_sig_trns: TIM- 25.3 69 0.0015 34.5 3.4 38 649-701 141-178 (268)
242 PRK09195 gatY tagatose-bisphos 25.1 8.5E+02 0.018 26.6 11.9 116 524-664 3-134 (284)
243 PF05382 Amidase_5: Bacterioph 25.0 53 0.0012 32.2 2.4 97 327-460 30-126 (145)
244 COG0134 TrpC Indole-3-glycerol 24.6 4.4E+02 0.0096 28.4 9.3 138 206-383 33-183 (254)
245 PRK13111 trpA tryptophan synth 24.5 4.7E+02 0.01 28.1 9.7 161 523-710 21-193 (258)
246 PF03932 CutC: CutC family; I 24.5 1.6E+02 0.0034 30.6 5.8 118 580-710 22-165 (201)
247 PRK05692 hydroxymethylglutaryl 24.4 2.1E+02 0.0046 31.2 7.2 98 330-443 123-232 (287)
248 COG5178 PRP8 U5 snRNP spliceos 23.2 71 0.0015 40.6 3.4 21 742-764 9-29 (2365)
249 PF03740 PdxJ: Pyridoxal phosp 23.1 2.9E+02 0.0063 29.4 7.5 39 648-700 114-152 (239)
250 PRK10060 RNase II stability mo 22.9 7.7E+02 0.017 30.1 12.5 40 648-701 601-640 (663)
251 COG4747 ACT domain-containing 22.9 1.1E+02 0.0024 28.8 3.9 69 648-736 18-87 (142)
252 COG0826 Collagenase and relate 22.9 1.3E+02 0.0028 33.8 5.3 108 330-445 52-168 (347)
253 PF09370 TIM-br_sig_trns: TIM- 22.6 83 0.0018 33.9 3.4 82 331-429 141-235 (268)
254 cd00381 IMPDH IMPDH: The catal 22.4 3.3E+02 0.0071 30.3 8.3 86 330-441 123-225 (325)
255 PRK09140 2-dehydro-3-deoxy-6-p 22.3 4.2E+02 0.0091 27.4 8.5 67 341-440 63-129 (206)
256 PF03060 NMO: Nitronate monoox 22.2 1.2E+02 0.0026 33.7 4.8 42 328-385 124-165 (330)
257 COG3315 O-Methyltransferase in 22.0 1.1E+03 0.023 25.9 12.8 150 543-709 117-273 (297)
258 PRK08610 fructose-bisphosphate 21.9 1.1E+03 0.023 25.9 13.3 147 524-696 3-172 (286)
259 CHL00200 trpA tryptophan synth 21.9 7.9E+02 0.017 26.5 10.8 141 258-439 80-228 (263)
260 PRK00278 trpC indole-3-glycero 21.7 8.7E+02 0.019 25.9 11.2 136 207-383 40-187 (260)
261 COG4943 Predicted signal trans 21.6 4.4E+02 0.0095 31.0 9.0 80 307-398 437-517 (524)
262 PF06673 L_lactis_ph-MCP: Lact 21.5 65 0.0014 32.9 2.2 45 99-145 256-301 (347)
263 PRK07084 fructose-bisphosphate 21.2 1.2E+03 0.025 26.1 12.7 115 523-662 8-143 (321)
264 COG1649 Uncharacterized protei 20.9 60 0.0013 37.3 2.1 18 330-347 118-135 (418)
265 PRK11572 copper homeostasis pr 20.8 2.7E+02 0.0058 29.9 6.8 102 586-699 37-147 (248)
266 PF00490 ALAD: Delta-aminolevu 20.8 34 0.00074 37.7 0.1 134 561-709 173-324 (324)
267 PRK01261 aroD 3-dehydroquinate 20.6 1.1E+02 0.0024 32.3 3.9 34 406-445 76-109 (229)
268 TIGR01949 AroFGH_arch predicte 20.6 4.8E+02 0.01 27.7 8.9 98 330-440 126-225 (258)
No 1
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=2.5e-63 Score=529.52 Aligned_cols=299 Identities=65% Similarity=1.112 Sum_probs=278.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+||.+||||++||+.|++.|+++.+||||||+||||++||+||.+|+|+||+.+.|++|++++.+||+...|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999533899999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCce
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~ 251 (811)
|++.||||+||++|++.+.++.|++.|+| .++||||+|+|++++..++++|||++.|+.+.++++++.++++|++++.+
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998877778889998 56999999999999888999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCChH
Q 003550 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (811)
Q Consensus 252 ~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~ 331 (811)
|||||+.+.|+++++.....++++++.+++.+..+.+++.+|++|.++|++|++||+||++++.+|+|.+.+.++..+++
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999864212678998777777777778899999999999999999999999999999988889999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 332 ~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
+|++||++||+||+|||+||...+++|++||..||+.+++.|+|.||||+||||+++.++
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~~ 299 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhccC
Confidence 999999999999999999997799999999999999999998899999999999998753
No 2
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=5.5e-56 Score=473.19 Aligned_cols=278 Identities=26% Similarity=0.456 Sum_probs=246.5
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCC--CeeecccccccCCcEEEeecCccccccccCCCcCCCccccc-cccccCc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGV--DFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI-PEIMAGS 484 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Ga--d~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~-~~~~~~~ 484 (811)
|+||||||+||.+||||++||+.|+++|| |+||||||+||||++||+||.+|+|+||++.. |++|.+++ .+|+..+
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~-F~~r~~t~~idG~~~~ 79 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARV-YPKRKKTYSVNGVSTK 79 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccc-cccccccccccccccC
Confidence 68999999999999999999999999999 47999999999999999999999999999885 88888884 6999999
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
|+++.||||+||++|++....+ .|++.+.+.++||||+|+|++++.. ++++|||+++++. +.|+++++.
T Consensus 80 g~~~~d~TlaELk~L~~~~~~~------~r~~~~~g~~~IpTLeEvl~~~~~~----gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 80 GWFSVDFTLAELQQVTLIQGIF------SRTPIFDGQYPISTVEDVVTLAKPE----GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred CceeccCCHHHHhhCCCCCCcc------cCCcccCCcCCCCCHHHHHHHhHhc----CeEEEEecHHHHH-HcCCCHHHH
Confidence 9999999999999999875432 3678888866999999999999874 8999999999987 489999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc---cCceEEE-EEccc---------cchhchHhHHHHHHhhhhhcc
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVY-KVKEN---------IRDALNQTIEDIKKFADSVVL 631 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~---p~~~~~~-l~~~~---------~~d~~~~~l~~i~~~a~~v~~ 631 (811)
|+++|+++|+ |+||||++..|+++++. +++++++ +++.. +.++.. ++++|++||++|++
T Consensus 149 l~~~L~~~~~-------v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~-~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVKV-------DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK-NLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcCc-------EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH-hHHHHHHHHhhcCC
Confidence 9999998754 79999999999999986 6788887 55431 122222 59999999999999
Q ss_pred ccceeecCC-ccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcC---CCEEEeCChHHHHH
Q 003550 632 SKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG---IDGVITEFPMTAAR 707 (811)
Q Consensus 632 ~~~~i~p~~-~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~G---VDGIiTD~P~~~~~ 707 (811)
++.+++|.. ..++...+.+|+++|++||.||+||++||.. ++++|+.||+.|+..|+ +.| ||||+||||+++.+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~~~-~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLSFV-GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHHHH-hcCCCCCCEEEecCchhhcc
Confidence 999999975 4667778899999999999999999999987 99999999999999998 666 99999999999865
No 3
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=1.3e-52 Score=454.37 Aligned_cols=300 Identities=65% Similarity=1.035 Sum_probs=252.5
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+....|.+|.++++++.+.+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 58999999999999999999999999999999999999999999999999999999988767889988887777778888
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.|+||+||++|+++....+...+..+++.+.+.++||||+|+|+++++.. .++++||||.+.....+.+..++++|++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 159 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKS-LSGVLINVENAAYLAEKKGLDVVDAVLD 159 (300)
T ss_pred eecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcC-CceEEEEeeccchhhhccCccHHHHHHH
Confidence 999999999999987543322223455667776689999999999998762 2489999998765432235568999999
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCC
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA 647 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~ 647 (811)
+|+++++.+...++|+||||++++|+.+++..+++++++++....+.....+++++.+|++++++...+.|....++...
T Consensus 160 ~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 239 (300)
T cd08604 160 ALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQ 239 (300)
T ss_pred HHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCc
Confidence 99999986322248999999999999999987889999987554444455567777888889888777776554555556
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHH
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~ 708 (811)
+++|+++|++|++|++||+|++...++++|+.||..++..++.++||||||||+|+++.+|
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~~~~~ 300 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchhhhcC
Confidence 6899999999999999999999888999999999988888777899999999999999875
No 4
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=6.6e-52 Score=449.05 Aligned_cols=296 Identities=50% Similarity=0.793 Sum_probs=244.9
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccc-cccccccCccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITT-TIPEIMAGSGI 486 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~-~~~~~~~~~G~ 486 (811)
|+||||||++|.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+... |++|.. .+.+++++.|+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~~~~~~~~~~g~ 79 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV-FPKRKKTYVVEGQSTSGI 79 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccc-cccccceecccCcccCCe
Confidence 6899999999999999999999999999999999999999999999999999999998765 444444 46788889997
Q ss_pred cccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
++.|+||+||++|+++...+|. ...|++.+.+.++||||+|+|+++++.+ ..+++||||.+.+.....+.++++.++
T Consensus 80 ~v~d~T~aeL~~l~~~~~~~~~--~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 80 FSFDLTWAEIQTLKPIISNPFS--VLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeeCCHHHHhhCcccccCccc--ccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhhhccccHHHHHH
Confidence 7999999999999987554332 1345566666679999999999999752 258999999876543323456889999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc---cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCC-cc
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN-SA 642 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~---p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~-~~ 642 (811)
++|+++++... .++|+|||||+.+|+++++. |.++++++++....+.....+.+++.||++++++...+.|.. ..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999998521 25999999999999999986 788888887654332234557788889999999877777643 23
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhc-CCCEEEeCChHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFPMTAARY 708 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~-GVDGIiTD~P~~~~~~ 708 (811)
+....+.+|+++|++|++|++||+|++...++|+|+.|+..++..++..+ ||||||||||+++++|
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPATAARA 302 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCchhhhcC
Confidence 34445689999999999999999999998899999999999999999555 9999999999999875
No 5
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=2e-49 Score=431.00 Aligned_cols=287 Identities=30% Similarity=0.454 Sum_probs=237.7
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCc-CCCcccc-ccccccCcc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK-FNSITTT-IPEIMAGSG 485 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~-f~~r~~~-~~~~~~~~G 485 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++...+ |++|..+ ..++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999986643 6677665 234556678
Q ss_pred ccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccH
Q 003550 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSV 561 (811)
Q Consensus 486 ~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~ 561 (811)
+++.++||+||++|+++.+++. +++.+.+.++||||+|+|+++++.+ +.++++||||.+.......+..+
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 154 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPM 154 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcc------cCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCH
Confidence 6799999999999999876532 2344556569999999999998752 13689999997765432245679
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccc---h------------hchHhHHHHHHhh
Q 003550 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR---D------------ALNQTIEDIKKFA 626 (811)
Q Consensus 562 ~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~---d------------~~~~~l~~i~~~a 626 (811)
+++|+++|+++++.+. .++|+|||||+++|++++++.+++++++++.... + ..+..+++++.++
T Consensus 155 ~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
T cd08602 155 EDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYA 233 (309)
T ss_pred HHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhc
Confidence 9999999999998631 1499999999999999998878899999865421 0 2334567777889
Q ss_pred hhhccccceeecCCc-cccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 627 DSVVLSKESVYPLNS-AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 627 ~~v~~~~~~i~p~~~-~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+++++++..+.|... ..+...+++|+++|++|++|++||+|++..+++++|++|+.+++..++ ++||||||||+|
T Consensus 234 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 234 DGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred eEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHH-HhCCCEEeCCCC
Confidence 999998888777532 334456789999999999999999999998999999999999999998 799999999998
No 6
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=2.2e-49 Score=429.36 Aligned_cols=283 Identities=43% Similarity=0.734 Sum_probs=237.5
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.++.++++|.++|.+..|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGAD--VLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCC--EEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCC
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhh-cCchHHHHHHH
Q 003550 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQ-HNLSMRSFVLS 243 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~----~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~-~~~~~~~~l~~ 243 (811)
|++.|+|++||++|+++++... |...|.+ +++||||+|+|++++. .+++||||.+.+..+ .+..+++.+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 157 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDN-AGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLT 157 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCC-CCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHH
Confidence 9999999999999998654322 4555666 5799999999999975 579999997764332 23468889999
Q ss_pred HhhhcCc------eEEecCCHHHHHHHHHhc--CCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCc
Q 003550 244 VSRSVVV------NYISSPEVNFLRSIAARF--RPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (811)
Q Consensus 244 ~lk~~~~------~~isSf~~~~L~~l~~~~--~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~ 315 (811)
+++++++ .+||||+...|+++++.. | ..+++++. +... ..+ ....+..++.++.++++++.
T Consensus 158 ~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p--~v~~~~l~-~~~~------~~~--~~~~l~~~~~~a~~v~~~~~ 226 (302)
T cd08571 158 SLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTK--LVFRVLDV-DDTE------PDT--LLSNLTEIKKFASGVLVPKS 226 (302)
T ss_pred HHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCC--ceEEEeec-CCCc------CCC--ChhHHHHHHHhcCccccChh
Confidence 9999864 499999999999999998 6 56666532 1110 001 01245677788999999988
Q ss_pred ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHc--CCCccCeEeccCCCCcchh
Q 003550 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN--GDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 316 ~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~--G~~~VDgIiTD~P~~a~~~ 391 (811)
++.+.+...+....+++|++||++|++|++||||++ ...+|+|..|+..++.+++.. | |||||||+|+++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~g---VDGiiTD~P~~~~~~ 302 (302)
T cd08571 227 YIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNS---VDGVITDFPATAARA 302 (302)
T ss_pred HeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCC---CCEEEecCchhhhcC
Confidence 888754445555667899999999999999999997 467899999999999999987 7 999999999988653
No 7
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=1.1e-48 Score=425.15 Aligned_cols=285 Identities=31% Similarity=0.471 Sum_probs=244.0
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhh--hhcccccccccCCCCC
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ--IFKTQQKNYLVNGVPT 169 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~--~~~~~~~~y~~~G~~~ 169 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .|++|++++.++|.+.
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~ 78 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNV 78 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCccc
Confidence 689999999999999999999999999999 999999999999999999999999999977 4889999999999999
Q ss_pred CcccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhh-cCchHHHH
Q 003550 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQ-HNLSMRSF 240 (811)
Q Consensus 170 ~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~-~~~~~~~~ 240 (811)
.||++.|+|++||++++++.++.++...|.+ .++||||+|+|++++. .+++||||.+.+... .+..+++.
T Consensus 79 ~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 157 (309)
T cd08602 79 TGWFTEDFTLAELKTLRARQRLPYRDQSYDG-QFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDK 157 (309)
T ss_pred CCeeeccCCHHHHhhCccCCcCcccCcccCC-CcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHH
Confidence 9999999999999999999877655556666 5699999999999853 479999998765432 45678999
Q ss_pred HHHHhhhcCc------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCc--cCC--CcccchHHHhh--hHHHHHhhcc
Q 003550 241 VLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEP--TTNQTYGSLLK--NLTFIKTFAS 308 (811)
Q Consensus 241 l~~~lk~~~~------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~--~~~--~~~~~y~~l~~--~L~~i~~~a~ 308 (811)
++++++++++ .+||||+.+.|++++++. ..++++++..... ..+ +.+.+|.++.. .++.++.++.
T Consensus 158 v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
T cd08602 158 LLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT---DLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234 (309)
T ss_pred HHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh---CCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhce
Confidence 9999999875 389999999999999987 4678875532221 111 22456775443 5677778899
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
++++++.++++.+..+++...+++|+.||++|++|++||||++ ...+++|.+|+.++|+.+++.| ||||+||+|
T Consensus 235 ~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred EEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 9999999998876666777778999999999999999999997 5788999999999999999999 999999998
No 8
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-47 Score=421.47 Aligned_cols=303 Identities=15% Similarity=0.193 Sum_probs=229.6
Q ss_pred ccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecC-ccccccccCCCc-CCCccccc-c
Q 003550 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI-NLINSTNAAQSK-FNSITTTI-P 478 (811)
Q Consensus 402 ~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~-~L~rtT~v~~~~-f~~r~~~~-~ 478 (811)
++....++||||||++|.+||||++||++|+++|||+||||||+||||++||+||. +|+|+||+...+ |++|.++. .
T Consensus 11 ~~~~~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~ 90 (356)
T cd08560 11 KPFRKTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFT 90 (356)
T ss_pred CCCCCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccc
Confidence 34456899999999999999999999999999999999999999999999999997 899999998754 77777652 2
Q ss_pred cccc----CccccccCCCHHHHhccCcccc--CCcc--------cccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEE
Q 003550 479 EIMA----GSGIFSFSLIWDEIQTLIPQIS--NPYF--------KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVL 544 (811)
Q Consensus 479 ~~~~----~~G~~v~dlT~~ELk~L~~~~~--~p~~--------~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~ 544 (811)
++.. ..|+++.|+||+||++|+.+.. .++. ++..+++..+.+.++||||+|+|+++++.+ ++++
T Consensus 91 ~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~--v~l~ 168 (356)
T cd08560 91 PANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG--VKMT 168 (356)
T ss_pred ccccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC--ceEE
Confidence 2222 3345899999999999987532 1110 112345555666679999999999998752 7999
Q ss_pred EEecchhHHHhhcC----ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceE--EEEEccc-cch---
Q 003550 545 ISIENAVYLAEKQG----MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYEL--VYKVKEN-IRD--- 613 (811)
Q Consensus 545 IEiK~~~~~~~~~g----~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~--~~l~~~~-~~d--- 613 (811)
||||.+.+.....| .++++.++++|+++++.. ++|+|||||+..|+++++. |++++ +++.+.. ..+
T Consensus 169 iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~ 245 (356)
T cd08560 169 PELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPA 245 (356)
T ss_pred EEeCCCcccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCccccccc
Confidence 99998765322112 158899999999999862 4999999999999999887 97755 5554421 000
Q ss_pred hchHhHHHH-HHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCccccc--c-cc---------cCCC
Q 003550 614 ALNQTIEDI-KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ--A-WD---------FFSD 680 (811)
Q Consensus 614 ~~~~~l~~i-~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~--~-~d---------~~~D 680 (811)
.-...++++ +.+++.+++++..+++...+.....+.+|+++|++||+|++||++++...+ | +. ..+|
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 011346666 556888889877666543333345789999999999999999998775444 4 22 3455
Q ss_pred hHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 681 PTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 681 ~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...++..+++++|||||+||||+++..|.
T Consensus 326 ~~~~~~~~~~~~GvDGvftD~p~~~~~~~ 354 (356)
T cd08560 326 MYNVLDVLARDVGILGIFSDWPATVTYYA 354 (356)
T ss_pred HHHHHHHHHHhcCCCEEEccCCCceeEec
Confidence 56778877778999999999999887765
No 9
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1.1e-46 Score=411.00 Aligned_cols=284 Identities=24% Similarity=0.313 Sum_probs=214.8
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||++|.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||++.. |++|... .+.| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~-----~g~~-~ 73 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEK-FPDRKRK-----DGRY-Y 73 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccc-ccccccc-----CCce-e
Confidence 6899999999999999999999999999999999999999999999999999999997753 4454432 1445 7
Q ss_pred ccCCCHHHHhccCccccCCcc---ccccc--CCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcC
Q 003550 488 SFSLIWDEIQTLIPQISNPYF---KFKLF--RNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQG 558 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~---~~~~~--rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g 558 (811)
|.++||+||++|+++.++... ....+ +.+.....++||||+|+|+++++.+ ..++++||||.+.... ..+
T Consensus 74 v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~ 152 (318)
T cd08600 74 VIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QEG 152 (318)
T ss_pred EeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hcc
Confidence 999999999999998763210 00000 1111123468999999999998631 1368999999765432 134
Q ss_pred ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHh-c-c----CceEEEEEccc-cch-----------------h
Q 003550 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-T----SYELVYKVKEN-IRD-----------------A 614 (811)
Q Consensus 559 ~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~-~-p----~~~~~~l~~~~-~~d-----------------~ 614 (811)
.++++.|+++|+++++.+. ..+|+||||++.+|+++|+ . | ++++++++... +.. .
T Consensus 153 ~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T cd08600 153 KDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMF 231 (318)
T ss_pred ccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhc
Confidence 5699999999999998632 2489999999999999997 6 9 99999998631 111 1
Q ss_pred chHhHHHHHHhhhhhccccceeecCCcc-ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcC
Q 003550 615 LNQTIEDIKKFADSVVLSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG 693 (811)
Q Consensus 615 ~~~~l~~i~~~a~~v~~~~~~i~p~~~~-~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~G 693 (811)
++..+.+++.+|+.+++++..+.+.... +...++++|+++|++|+.|++||+|+++..+ ++.|.......++.++|
T Consensus 232 ~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~---~~~~~~~~~~~~l~~~G 308 (318)
T cd08600 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE---YAKDADQLLDALLNKAG 308 (318)
T ss_pred CHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccc---ccCCHHHHHHHHHHhcC
Confidence 2345778888999999987766543211 2234678999999999999999999996422 23444433344345899
Q ss_pred CCEEEeCChH
Q 003550 694 IDGVITEFPM 703 (811)
Q Consensus 694 VDGIiTD~P~ 703 (811)
|||||||+|+
T Consensus 309 VDGiiTD~P~ 318 (318)
T cd08600 309 VDGVFTDFPD 318 (318)
T ss_pred CcEEEcCCCC
Confidence 9999999995
No 10
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=9.5e-47 Score=408.68 Aligned_cols=280 Identities=23% Similarity=0.398 Sum_probs=226.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhh-hhcccccccccCCCCCC
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ-IFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~-~~~~~~~~y~~~G~~~~ 170 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+ .|+.+++++. ++..+.
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~-~~~~~~ 77 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVP-EIGSTS 77 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCC--EEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccc-cccccC
Confidence 689999999999999999999999999999 999999999999999999999999999987 7888888854 333478
Q ss_pred cccccccCHHhhcccccccccc------CCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhh-hcCchHHHH
Q 003550 171 GWFSIDYTLNDLSNIILNQGVY------SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYA-QHNLSMRSF 240 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~------~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~-~~~~~~~~~ 240 (811)
||++.|+|++||+++++++... .+...|.+ .++||||+|+|++++. .+++||||.+.+.. +.+..+++.
T Consensus 78 ~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 156 (300)
T cd08604 78 GIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKN-AGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDA 156 (300)
T ss_pred ceeeecCcHHHHhhCccCCcCcccccCcCCCcccCC-CCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHH
Confidence 8999999999999999875321 23455665 5799999999999864 47999999776432 334578999
Q ss_pred HHHHhhhcCc-------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCC
Q 003550 241 VLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (811)
Q Consensus 241 l~~~lk~~~~-------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~ 313 (811)
++++++++++ .+||||+.+.|+++++.. ..++++++-. .. ..+ ....+..++.++.+++++
T Consensus 157 v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~---~~~~~~l~~~-~~------~~~--~~~~~~~~~~~a~~v~~~ 224 (300)
T cd08604 157 VLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI---SYERVYVVDE-TI------RDA--SDSSIEEIKKFADAVVID 224 (300)
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc---CCceEEEecC-cc------ccc--ChhHHHHHHHhccEEEeC
Confidence 9999998875 389999999999999976 4677764421 10 011 012345667788999998
Q ss_pred CcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHH-HHHcCCCccCeEeccCCCCcchh
Q 003550 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS-FIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 314 ~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~-~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
+..+++.. ..++...+++|++||++|++|++||||++ ...+++|..||.+++.+ +.+.| ||||+||+|+++.++
T Consensus 225 ~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~~ 300 (300)
T cd08604 225 RGSVFPVS-TSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAARY 300 (300)
T ss_pred hhhccccc-CCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhcC
Confidence 88887754 34555567899999999999999999986 58899999999766665 55788 999999999988753
No 11
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.5e-46 Score=414.32 Aligned_cols=297 Identities=23% Similarity=0.287 Sum_probs=226.8
Q ss_pred cccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccccc
Q 003550 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~ 482 (811)
..+.+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++... |+.|.+. .
T Consensus 22 ~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~-~~~~~~~-----~ 95 (355)
T PRK11143 22 ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAER-FPDRARK-----D 95 (355)
T ss_pred hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCcccc-ccccccc-----C
Confidence 467899999999999999999999999999999999999999999999999999999999997653 5554432 2
Q ss_pred CccccccCCCHHHHhccCccccCCcc-cc----cccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHH
Q 003550 483 GSGIFSFSLIWDEIQTLIPQISNPYF-KF----KLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYL 553 (811)
Q Consensus 483 ~~G~~v~dlT~~ELk~L~~~~~~p~~-~~----~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~ 553 (811)
+.| ++.++||+||++|+++.++... .. +..+.+.....++||||+|+|++++..+ ..++++||||.+.+.
T Consensus 96 g~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 96 GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred Cce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 444 8999999999999998652100 00 0012222233478999999999998731 136899999986543
Q ss_pred HhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHh-c-cCc----eEEEEEccc-cch-------------
Q 003550 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-TSY----ELVYKVKEN-IRD------------- 613 (811)
Q Consensus 554 ~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~-~-p~~----~~~~l~~~~-~~d------------- 613 (811)
. ..+.+++++|+++|+++++.+. .++|+|+|||+++|+++++ . |++ ++++++... ...
T Consensus 175 ~-~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (355)
T PRK11143 175 H-QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNY 252 (355)
T ss_pred c-ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCccccc
Confidence 2 1345689999999999998531 2589999999999999988 5 874 888887421 110
Q ss_pred -h----chHhHHHHHHhhhhhccccceeecC-CccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHH
Q 003550 614 -A----LNQTIEDIKKFADSVVLSKESVYPL-NSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT 687 (811)
Q Consensus 614 -~----~~~~l~~i~~~a~~v~~~~~~i~p~-~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~ 687 (811)
. ++..+.+++.+|+.+.+++..+.+. +..++...+++|+++|++|+.|++||||++. ++ +|+.|+......
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~--~~-~~~~d~~~~~~~ 329 (355)
T PRK11143 253 NYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQ--LP-EYATDVNQLYDI 329 (355)
T ss_pred chhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEecccc--ch-hhhcChHHHHHH
Confidence 0 1234667777888888876545432 3345566779999999999999999999884 54 788887754444
Q ss_pred HHHhcCCCEEEeCChHHHHHHHHh
Q 003550 688 YYEGAGIDGVITEFPMTAARYRRN 711 (811)
Q Consensus 688 ~l~~~GVDGIiTD~P~~~~~~~~~ 711 (811)
++.++||||||||+|+++.+++++
T Consensus 330 ~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 330 LYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred HHHccCCCEEEcCChHHHHHHHhc
Confidence 345899999999999999999854
No 12
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=1.9e-46 Score=406.55 Aligned_cols=279 Identities=29% Similarity=0.348 Sum_probs=214.0
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||........ +....|..
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~~~ 73 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTGYF 73 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCCee
Confidence 68999999999999999999999999999999999999999999999999999999955322111 12233348
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTN 563 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~~~ 563 (811)
|.++||+||++++++.|+ ......+.+.+...++||||+|+|+++++.+ +.++++||||.+.... ..+..+++
T Consensus 74 v~~~t~~eL~~l~~~~~~--~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~-~~~~~~~~ 150 (296)
T cd08559 74 VIDFTLAELKTLRAGSWF--NQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEE 150 (296)
T ss_pred eecCcHHHHhcCCCCCcc--cccccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhh-hcCCCHHH
Confidence 999999999999998763 1111112233333478999999999998742 1368999999765432 13456899
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccch-----------hchHhHHHHHHhhhhhcc
Q 003550 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD-----------ALNQTIEDIKKFADSVVL 631 (811)
Q Consensus 564 ~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d-----------~~~~~l~~i~~~a~~v~~ 631 (811)
.|+++|+++++.. ..++|+|+|||+++|+++|+. |+++++++++..... .....+..++.+++++++
T Consensus 151 ~v~~~l~~~~~~~-~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (296)
T cd08559 151 KLLEVLKKYGYTG-KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGP 229 (296)
T ss_pred HHHHHHHHcCCCC-CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhCC
Confidence 9999999998752 114899999999999999999 999999998654221 123445666667888887
Q ss_pred ccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhc-CCCEEEeCCh
Q 003550 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFP 702 (811)
Q Consensus 632 ~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~-GVDGIiTD~P 702 (811)
+...+.+.........+++|+++|++|+.|++||+|++..+++++|.. ++.+++ ++ ||||||||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~----~~~~l~-~~~GVdgIiTD~P 296 (296)
T cd08559 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQ----DMDALY-NAAGVDGVFTDFP 296 (296)
T ss_pred CHHhccccccccccCchHHHHHHHHcCCEEEEEEecCccccccccccc----CHHHHH-HHhCCCEEEcCCC
Confidence 665543322222334579999999999999999999977667777765 466776 77 9999999998
No 13
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.1e-45 Score=407.48 Aligned_cols=290 Identities=22% Similarity=0.320 Sum_probs=221.2
Q ss_pred CCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCC
Q 003550 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (811)
Q Consensus 89 ~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~ 168 (811)
..+|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+.|+.+++. +|
T Consensus 24 ~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD--~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~---~g-- 96 (355)
T PRK11143 24 SAEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK---DG-- 96 (355)
T ss_pred CCCcEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEeeeEccCCcEEEeCCchhcccCCccccccccccc---CC--
Confidence 458999999999999999999999999999999 99999999999999999999999999999988887654 22
Q ss_pred CCcccccccCHHhhccccccccccC--------CCCCCC--CCCcccccHHHHHHhhC--------CCceEEeeccchhh
Q 003550 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD--GNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (811)
Q Consensus 169 ~~g~~v~d~t~~eL~~l~~~~~~~~--------~~~~~~--~~~~~iptL~evl~~~~--------~~~l~leiK~~~~~ 230 (811)
+|++.|+|++||++++++.++.. .+..|. ..+++||||+|+|++++ ..+++||||.+.+.
T Consensus 97 --~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 97 --RYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred --ceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 46899999999999999875421 111222 01479999999999885 34699999987654
Q ss_pred hhcCchHHHHHHHHhhhcCc------eEEecCCHHHHHHHHH-hcCCC--CcceeeeecCCCcc---CC-----Ccccch
Q 003550 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRPS--MTKLVFRFLGKSEI---EP-----TTNQTY 293 (811)
Q Consensus 231 ~~~~~~~~~~l~~~lk~~~~------~~isSf~~~~L~~l~~-~~~~~--~~~lv~~~~~~~~~---~~-----~~~~~y 293 (811)
...+.++++.++++++++++ .+|+||+.+.|+++++ ..|.. +.++++++...... +. ..+..|
T Consensus 175 ~~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
T PRK11143 175 HQEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNY 254 (355)
T ss_pred cccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccch
Confidence 44456789999999999876 4999999999999998 55520 24777654322111 00 012234
Q ss_pred HHHh--hhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHH-
Q 003550 294 GSLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI- 370 (811)
Q Consensus 294 ~~l~--~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i- 370 (811)
..+. ..+.+++.++.++.+++..+.+.+...++..++++|++||++|++|++||||++... +|..|+ .++++++
T Consensus 255 ~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~--~~~~d~-~~~~~~~~ 331 (355)
T PRK11143 255 DWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQLP--EYATDV-NQLYDILY 331 (355)
T ss_pred hhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccccch--hhhcCh-HHHHHHHH
Confidence 4432 246677778999988776554432334556667999999999999999999987432 454555 5666654
Q ss_pred -HcCCCccCeEeccCCCCcchhhh
Q 003550 371 -DNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 371 -~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
+.| |||||||+|+++.+++.
T Consensus 332 ~~~G---VDGIiTD~P~~~~~~l~ 352 (355)
T PRK11143 332 NQAG---VDGVFTDFPDKAVKFLN 352 (355)
T ss_pred HccC---CCEEEcCChHHHHHHHh
Confidence 889 99999999999887764
No 14
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.9e-45 Score=403.97 Aligned_cols=293 Identities=15% Similarity=0.149 Sum_probs=225.8
Q ss_pred CCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCC-CCCCCcchhh--hhcccccccccCC
Q 003550 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL-KLDNASNIAQ--IFKTQQKNYLVNG 166 (811)
Q Consensus 90 ~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~-~l~rtT~~~~--~~~~~~~~y~~~G 166 (811)
..++||||||+++.+||||++||+.|+++|+| +||||||+||||++||+||. +|+||||+.+ .|++++++..++|
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad--~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAG--ILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 35789999999999999999999999999999 99999999999999999997 8999999987 5899999988888
Q ss_pred CC----CCcccccccCHHhhccccccccc----------------cCCCCCCCCCCcccccHHHHHHhhCC--CceEEee
Q 003550 167 VP----TPGWFSIDYTLNDLSNIILNQGV----------------YSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNI 224 (811)
Q Consensus 167 ~~----~~g~~v~d~t~~eL~~l~~~~~~----------------~~~~~~~~~~~~~iptL~evl~~~~~--~~l~lei 224 (811)
++ ..+|++.|||++||++|+.++.. .+++..|++ .++||||+|+|++++. .++++||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~IPTL~Evl~lv~~~~v~l~iEi 171 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYAT-CGTLMTHKESIALFKSLGVKMTPEL 171 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccC-CCCCCCHHHHHHHHHhcCceEEEEe
Confidence 76 56799999999999999876321 123344555 5799999999999964 6899999
Q ss_pred ccchhhhhc-----CchHHHHHHHHhhhcCc----eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHH
Q 003550 225 QHDAFYAQH-----NLSMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295 (811)
Q Consensus 225 K~~~~~~~~-----~~~~~~~l~~~lk~~~~----~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~ 295 (811)
|++.+.... ...++..++++++++++ ++||||+++.|+++++..|....+++++ .+... +. ...+.+
T Consensus 172 K~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l-~~~~~--~~-~~~~~~ 247 (356)
T cd08560 172 KSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVYL-DDRDD--TA-DFPATW 247 (356)
T ss_pred CCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEEE-ccCCc--cc-cccccH
Confidence 987753321 12588899999999875 4999999999999999887433344542 22211 10 011222
Q ss_pred HhhhHHHH-HhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCC-Cc--c-cCC---------CCC
Q 003550 296 LLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDI-PI--S-FNY---------SYD 361 (811)
Q Consensus 296 l~~~L~~i-~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~-~~--~-~~~---------~~D 361 (811)
+ ..++++ ..++++|++++.++.+.+.+ ....++++|++||++||+|++|||+++- .. . ++| ..|
T Consensus 248 ~-~~l~~i~a~~a~~i~P~~~~l~~~~~~-~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 248 S-PSMDELKARGVNIIAPPIWMLVDPDEN-GKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred H-HHHHHHHhCCccEecCchhhccccccc-cccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 2 356777 45688999998887765332 2335688999999999999999998752 21 1 222 233
Q ss_pred hHHHHHHHH-HcCCCccCeEeccCCCCcchhhhh
Q 003550 362 PLTEYLSFI-DNGDFSVDGVLSDFPLTPSAAVDC 394 (811)
Q Consensus 362 ~~~e~~~~i-~~G~~~VDgIiTD~P~~a~~~~~~ 394 (811)
-..++..++ +.| ||||+||+|+++..+.+|
T Consensus 326 ~~~~~~~~~~~~G---vDGvftD~p~~~~~~~~~ 356 (356)
T cd08560 326 MYNVLDVLARDVG---ILGIFSDWPATVTYYANC 356 (356)
T ss_pred HHHHHHHHHHhcC---CCEEEccCCCceeEecCC
Confidence 346777666 788 999999999999888776
No 15
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=2.4e-45 Score=400.64 Aligned_cols=279 Identities=26% Similarity=0.342 Sum_probs=216.5
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.|++++++ +| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~---~g----~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK---DG----R 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEeeeeECcCCcEEEeCCchhhccCCccccccccccc---CC----c
Confidence 689999999999999999999999999999 99999999999999999999999999999988887755 23 4
Q ss_pred ccccccCHHhhccccccccccCC--------CCCC---CCCCcccccHHHHHHhhC--------CCceEEeeccchhhhh
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR--------TDKF---DGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ 232 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~--------~~~~---~~~~~~iptL~evl~~~~--------~~~l~leiK~~~~~~~ 232 (811)
|++.|+|++||+++++++++..+ +..| .+ .++||||+|+|++++ ..+++||||.+.++.+
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~ 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKS-DFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCC-CCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh
Confidence 68999999999999999876332 1112 12 479999999999875 3579999998765544
Q ss_pred cCchHHHHHHHHhhhcCc------eEEecCCHHHHHHHHH-hcCC--CCcceeeeecCCCccCC-------CcccchHHH
Q 003550 233 HNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRP--SMTKLVFRFLGKSEIEP-------TTNQTYGSL 296 (811)
Q Consensus 233 ~~~~~~~~l~~~lk~~~~------~~isSf~~~~L~~l~~-~~~~--~~~~lv~~~~~~~~~~~-------~~~~~y~~l 296 (811)
.+..+++.++++++++++ ++||||+++.|+++++ ..|+ ...++++++......+. +.+.+|+.+
T Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T cd08600 151 EGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWM 230 (318)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhh
Confidence 456799999999999876 5999999999999997 6651 13677765431111100 123357665
Q ss_pred h--hhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHH-HH-HHHc
Q 003550 297 L--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-LS-FIDN 372 (811)
Q Consensus 297 ~--~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~-~~-~i~~ 372 (811)
. ..+..++.++.++.+++.++.+.+...+....+++|++||++|++|++||||++....+. .|. .++ .. +++.
T Consensus 231 ~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~-~~~~~~~l~~~ 307 (318)
T cd08600 231 FTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDA-DQLLDALLNKA 307 (318)
T ss_pred cCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCH-HHHHHHHHHhc
Confidence 3 257778889999999988876654333445567899999999999999999987543333 233 333 22 4788
Q ss_pred CCCccCeEeccCCC
Q 003550 373 GDFSVDGVLSDFPL 386 (811)
Q Consensus 373 G~~~VDgIiTD~P~ 386 (811)
| |||||||+|+
T Consensus 308 G---VDGiiTD~P~ 318 (318)
T cd08600 308 G---VDGVFTDFPD 318 (318)
T ss_pred C---CcEEEcCCCC
Confidence 8 9999999995
No 16
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=4.5e-44 Score=387.99 Aligned_cols=274 Identities=29% Similarity=0.400 Sum_probs=211.6
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+..+++.. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCC--EEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCC
Confidence 789999999999999999999999999999 99999999999999999999999999998766653 445556
Q ss_pred ccccccCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhhcCchHHH
Q 003550 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRS 239 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~----~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~~~~~~~~ 239 (811)
+.+.++|++||++++++.++.. +.+.+.. +++||||+|+|++++. .+++||||.+......+..+++
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~ 150 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYG-GFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEE 150 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccC-CCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHH
Confidence 6899999999999999865421 1122222 4799999999999854 5699999987644344567889
Q ss_pred HHHHHhhhcCc------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhh--hHHHHHhhccccc
Q 003550 240 FVLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK--NLTFIKTFASGIL 311 (811)
Q Consensus 240 ~l~~~lk~~~~------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~--~L~~i~~~a~gi~ 311 (811)
.++++++++++ .+|+||+.+.|+++++..| +.++++++.............|+.+.. .+..++.++.++.
T Consensus 151 ~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 151 KLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETP--DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999998864 4999999999999999998 678887553322111111223333322 4555666788888
Q ss_pred CCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCC-CCcccCCCCChHHHHHHHHHc-CCCccCeEeccCC
Q 003550 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN-GDFSVDGVLSDFP 385 (811)
Q Consensus 312 ~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~-~~~~~~~~~D~~~e~~~~i~~-G~~~VDgIiTD~P 385 (811)
+++.++..... .....++++|++||++|++|++||||++ ...+++| .++|+++++. | |||||||+|
T Consensus 229 ~~~~~~~~~~~-~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~----~~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDS-NGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDF----KQDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred CCHHhcccccc-ccccCchHHHHHHHHcCCEEEEEEecCccccccccc----ccCHHHHHHHhC---CCEEEcCCC
Confidence 87776653221 2334447899999999999999999985 3444444 3889999998 9 999999998
No 17
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.9e-44 Score=379.64 Aligned_cols=250 Identities=22% Similarity=0.230 Sum_probs=196.8
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|++. .+| .|
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~----------------~~g-~v 64 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIE----------------RPG-PV 64 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCC----------------CCc-ee
Confidence 6899999999999999999999999999999999999999999999999999999831 056 79
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
.++||+||++++.+.++. ..+...++..+.+ +++|||+|+|++++++ .+++||||.+... ..+++.+.++
T Consensus 65 ~~~t~~el~~l~~~~~~~-~~~~~~~~~~~~~-~~iptL~evl~~~~~~---~~l~IEiK~~~~~-----~~~~~~v~~~ 134 (256)
T cd08601 65 KDYTLAEIKQLDAGSWFN-KAYPEYARESYSG-LKVPTLEEVIERYGGR---ANYYIETKSPDLY-----PGMEEKLLAT 134 (256)
T ss_pred ecCcHHHHHhcCCCcccc-ccCccccccccCC-ccCCCHHHHHHHhccC---ceEEEEeeCCCCC-----CCHHHHHHHH
Confidence 999999999999876531 1111112233333 7899999999999875 5899999965432 1477899999
Q ss_pred HHhcCCCCCC--CcEEEEEeCChHHHHHHHhc-cCceEEEEEcccc-chhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 569 LGNAGYNKQT--ALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI-RDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 569 L~~~g~~~~~--~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~-~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
++++++..+. .++|+|+||++.+|++++++ |+++++++++... .......++.++.++.++++.. .
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPSI----------A 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCch----------h
Confidence 9999886211 15999999999999999998 9999999986432 1112233444444444444321 1
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...+++|+.+|++|+.|++||+|+.. ++..++ ++||||||||+|+.+.+++
T Consensus 205 ~~~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~l~-~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DADPWMVHLIHKKGLLVHPYTVNEKA-------------DMIRLI-NWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred hcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEeCCHHHHHHhh
Confidence 23578999999999999999999874 688887 9999999999999998875
No 18
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=6.2e-44 Score=378.58 Aligned_cols=238 Identities=19% Similarity=0.164 Sum_probs=180.6
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g-~ 61 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN------------------GSG-A 61 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC------------------CCC-C
Confidence 579999999999999999999999999999999999999999999999999999999 667 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCC-CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNA-GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~-~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
|.++||+||++|+++.++.- .. ...|.+. ++||||+|+|+++++. .++||||..... .+++.|+
T Consensus 62 v~~~t~~el~~ld~g~~~~~----~~-~~~~~~~~~~iPtL~evl~~~~~~----~l~iEiK~~~~~------~~~~~v~ 126 (263)
T cd08580 62 VSAYTAAQLATLNAGYNFKP----EG-GYPYRGKPVGIPTLEQVLRAFPDT----PFILDMKSLPAD------PQAKAVA 126 (263)
T ss_pred hhhCcHHHHhcCCCcccccc----cc-CcccCCCCCcCccHHHHHHhhcCC----eEEEEECCCCcH------HHHHHHH
Confidence 99999999999999876421 00 1123332 4899999999999763 799999975421 3788999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cC-------ceEEEEEccccch---hc----h-------HhHHHHHH
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS-------YELVYKVKENIRD---AL----N-------QTIEDIKK 624 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~-------~~~~~l~~~~~~d---~~----~-------~~l~~i~~ 624 (811)
++|+++++. ++|+|+|||+.+|+.+++. |+ +.++++.+..... .. . ..+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999987 7999999999999999998 85 2222222110000 00 0 00000000
Q ss_pred hhhhhccccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 625 FADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 625 ~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+ ......+.+ .+...++++|+++|++ |++|++||+|++. ++.+++ ++||||||||+|+
T Consensus 203 ~----~~~~~~~~~---~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~-------------~~~~l~-~~GVDgIiTD~P~ 261 (263)
T cd08580 203 F----TLGEGRSPV---QATLWTPAAVDCFRRNSKVKIVLFGINTAD-------------DYRLAK-CLGADAVMVDSPA 261 (263)
T ss_pred e----ccccccccc---ccccCCHHHHHHHHhcCCcEEEEEEeCCHH-------------HHHHHH-HcCCCEEEeCCcc
Confidence 0 011011111 2224568999999999 9999999999885 688887 9999999999997
Q ss_pred H
Q 003550 704 T 704 (811)
Q Consensus 704 ~ 704 (811)
.
T Consensus 262 ~ 262 (263)
T cd08580 262 A 262 (263)
T ss_pred c
Confidence 5
No 19
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.2e-43 Score=365.05 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=177.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .+.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~v~ 61 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG------------------VEG-LLH 61 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC------------------CCc-eec
Confidence 6899999999999999999999999999999999999999999999999999998 566 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++......|+ ..+.+ ++||||+|+|+++++.. ..+++||+|.+.... ..+.+.+.+++
T Consensus 62 ~~t~~el~~l~~~~~~~~~-------~~~~~-~~iptL~evl~~~~~~~-~~~l~iEiK~~~~~~----~~~~~~v~~~~ 128 (229)
T cd08581 62 ELEDAELDSLRVAEPARFG-------SRFAG-EPLPSLAAVVQWLAQHP-QVTLFVEIKTESLDR----FGLERVVDKVL 128 (229)
T ss_pred cCCHHHHhhcccccCcccc-------cccCC-ccCCCHHHHHHHHhhCC-CceEEEEecCCcccc----cchhHHHHHHH
Confidence 9999999999875433221 33444 79999999999998731 268999999765321 12444555666
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
+..+ +. ++++|+|||+.+|+++|+.|.+++++++.... ... ...+..+++ .++.+... + .
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~----~~~----~~~~~~~~~--~~~~~~~~--~--~- 189 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD----DAS----LAEADELQP--DYLFCDKN--L--L- 189 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC----hHH----HHHHHhhCC--CEEecccc--c--C-
Confidence 6554 43 68999999999999999998899999875321 111 122333333 23333211 1 1
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
..++++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA-------------EALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH-------------HHHHHH-HhCCcEEEcCCC
Confidence 3588899999999999999884 688887 999999999998
No 20
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=1.3e-42 Score=377.17 Aligned_cols=254 Identities=17% Similarity=0.242 Sum_probs=190.6
Q ss_pred cccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCc
Q 003550 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (811)
Q Consensus 405 ~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~ 484 (811)
...++||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++
T Consensus 24 ~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~------------------~~ 85 (300)
T cd08612 24 PFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG------------------VD 85 (300)
T ss_pred CCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC------------------CC
Confidence 457899999999999999999999999999999999999999999999999999999999 66
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
| .|.++||+||++++.+....+. .+....+.+.+ ++||||+|+|+++++ ..++||||.+.. .+++.
T Consensus 86 g-~V~~~t~~eL~~l~~~~~~~~~-~~~~~~~~~~g-~~IPtL~EvL~~~~~----~~lnIEiK~~~~-------~~~~~ 151 (300)
T cd08612 86 K-LVSDLNYADLPPYLEKLEVTFS-PGDYCVPKGSD-RRIPLLEEVFEAFPD----TPINIDIKVEND-------ELIKK 151 (300)
T ss_pred c-ccccCCHHHHhhcccccccccc-CCccccccCCC-CCCCCHHHHHHhCCC----CeEEEEECCCch-------HHHHH
Confidence 7 8999999999999654211010 00111233444 799999999999854 489999997531 27789
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchh-------------chHhH------HHHHH
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA-------------LNQTI------EDIKK 624 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~-------------~~~~l------~~i~~ 624 (811)
++++++++++. ++|+|+|||+++|.++++. |+++++++++...... ....+ ...+.
T Consensus 152 v~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (300)
T cd08612 152 VSDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKT 227 (300)
T ss_pred HHHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhhh
Confidence 99999999987 7999999999999999999 9999998764310000 00000 00000
Q ss_pred hhhh--hccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 625 FADS--VVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 625 ~a~~--v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+... ........++. .+...++++|+++|++|+.|++||+|++. ++.+++ ++||||||||+|
T Consensus 228 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P 291 (300)
T cd08612 228 YFPKSMSRLNRFVLFLI--DWLLMRPSLFRHLQKRGIQVYGWVLNDEE-------------EFERAF-ELGADGVMTDYP 291 (300)
T ss_pred cccccccccccceeccc--ccccCCHHHHHHHHHCCCEEEEeecCCHH-------------HHHHHH-hcCCCEEEeCCH
Confidence 0000 00000001111 12334789999999999999999999884 688887 899999999999
Q ss_pred HHHHHHHH
Q 003550 703 MTAARYRR 710 (811)
Q Consensus 703 ~~~~~~~~ 710 (811)
+.+.+++.
T Consensus 292 ~~l~~~l~ 299 (300)
T cd08612 292 TKLREFLD 299 (300)
T ss_pred HHHHHHHh
Confidence 99988763
No 21
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=3.7e-42 Score=364.31 Aligned_cols=238 Identities=17% Similarity=0.096 Sum_probs=183.6
Q ss_pred ccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcc
Q 003550 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (811)
Q Consensus 406 ~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G 485 (811)
..|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|+ ++|
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~------------------~~~ 67 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN------------------GWG 67 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC------------------CCC
Confidence 46899999999999999999999999999999999999999999999999999999999 566
Q ss_pred ccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHH
Q 003550 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (811)
Q Consensus 486 ~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v 565 (811)
.|.++||+||++++.+.+. .+.+.+ ++||||+|+|+++++. ...++||+|....... .+...+
T Consensus 68 -~v~~~t~~el~~l~~~~~~---------~~~~~~-~~iPtL~evl~~~~~~--~~~l~iEiK~~~~~~~----~~~~~v 130 (249)
T PRK09454 68 -VAGELTWQDLAQLDAGSWF---------SAAFAG-EPLPTLSQVAARCRAH--GMAANIEIKPTTGREA----ETGRVV 130 (249)
T ss_pred -chhhCCHHHHHhcCCCCcc---------CCCCCC-CcCCCHHHHHHHHHhc--CCEEEEEECCCCCcch----hHHHHH
Confidence 7999999999999998653 133444 7899999999999764 2579999995432111 123333
Q ss_pred HHHHHhc--CCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcc
Q 003550 566 MEALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (811)
Q Consensus 566 ~~~L~~~--g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~ 642 (811)
..+++.. ++. ++++|+||++.+|.++++. |+++++++++....+. .....+ +.. ..+.+.
T Consensus 131 ~~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~----~~~~~~----~~~--~~~~~~--- 193 (249)
T PRK09454 131 ALAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDW----LELTRR----LGC--VSLHLN--- 193 (249)
T ss_pred HHHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccH----HHHHHh----cCC--eEEecc---
Confidence 3333333 333 5899999999999999998 9999999986421111 111111 111 112221
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
+...++++++++|++|++|++||+|++. ++..++ ++||||||||+|+.+..++
T Consensus 194 ~~~~~~~~v~~~~~~g~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~p~~~~~~~ 246 (249)
T PRK09454 194 HKLLDEARVAALKAAGLRILVYTVNDPA-------------RARELL-RWGVDCICTDRIDLIGPDF 246 (249)
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCChHhcCccc
Confidence 1224679999999999999999999884 578777 9999999999999887655
No 22
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=4e-42 Score=364.48 Aligned_cols=243 Identities=18% Similarity=0.231 Sum_probs=179.5
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.... ++.+ ..|
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~-~~~~---------~~~- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADV-FPER---------AHE- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCcc-cccc---------ccc-
Confidence 47899999999999999999999999999999999999999999999999999999994431 1111 123
Q ss_pred cccCCCHHHHhccCccccCC----cccc-cc--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISNP----YFKF-KL--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p----~~~~-~~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.+.++||+||++|+++.|+. +... .. .....+.+ ++||||+|+|+++++.+ ..++||||.+..... ...
T Consensus 70 ~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~~-~~~ 145 (252)
T cd08574 70 RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNHP-YYQ 145 (252)
T ss_pred chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccCc-cHH
Confidence 68999999999999997631 0000 00 00013344 79999999999999752 579999996542100 112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceee
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVY 637 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~ 637 (811)
.+++.++++++++++. .+++++||+.. ++.+|+. |+++++++.... ...++. -++.+.
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~------- 205 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP--------VESLRENGISRLN------- 205 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccc--------hHHHHhcCCeEEc-------
Confidence 4788999999999986 45666666654 7999998 999988754321 111211 122222
Q ss_pred cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 638 p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
+. +....+++|+.+|++|+.|++||+|++. ++.+++ ++||||||||-
T Consensus 206 ~~---~~~~~~~~v~~~~~~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~ 252 (252)
T cd08574 206 LE---YSQLSAQEIREYSKANISVNLYVVNEPW-------------LYSLLW-CSGVQSVTTNA 252 (252)
T ss_pred cC---cccCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEecCc
Confidence 22 1124578999999999999999999884 688887 99999999993
No 23
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=7.2e-42 Score=357.23 Aligned_cols=228 Identities=23% Similarity=0.235 Sum_probs=182.6
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~------------------~~~-~i~ 61 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN------------------GSG-AVT 61 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC------------------CCc-eee
Confidence 6999999999999999999999999999999999999999999999999999998 556 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+. ++.+.+ +++|||+|+|+++++.+ ..++||+|..... ...+++.|.+++
T Consensus 62 ~lt~~el~~l~~~~~~---------~~~~~~-~~iptl~evl~~~~~~~--~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 62 ELTWAELAQLDAGSWF---------SPEFAG-EPIPTLADVLELARELG--LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred cCcHHHHhhcCCCccc---------CCCCCC-CCCCCHHHHHHHHHhcC--CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 9999999999987542 233333 78999999999998752 6899999965432 123677899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. .++|+|+||++++|.++++. |+++++++......+ ..+.++ .++. ..+.+. +.....
T Consensus 126 ~~~~~~---~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~~~~~----~~~~--~~~~~~---~~~~~~ 189 (229)
T cd08562 126 RELWPH---ASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD----WLELLA----ALGA--VSIHLN---YRGLTE 189 (229)
T ss_pred HHhcCC---cCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC----HHHHHH----HcCC--eEEecC---hhhCCH
Confidence 998874 15999999999999999999 999999987543211 111111 1111 112221 112457
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
++|+.+|++|+.|++||+|++. ++..++ ++||||||||+|
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVNDPA-------------RAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCC
Confidence 8999999999999999999884 577777 999999999998
No 24
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4e-42 Score=360.80 Aligned_cols=231 Identities=19% Similarity=0.225 Sum_probs=182.3
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~g-~v~ 61 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH------------------GTG-AVR 61 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC------------------CCC-cee
Confidence 6899999999999999999999999999999999999999999999999999998 667 899
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++|+.+.+. + ++||||+|+|+++++. ...++||+|...... ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~--------------~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~~~--~~~~~~~~v~~~i 122 (235)
T cd08565 62 DLTLAERKALRLRDSF--------------G-EKIPTLEEVLALFAPS--GLELHVEIKTDADGT--PYPGAAALAAATL 122 (235)
T ss_pred eccHHHHhcCCCCCCC--------------C-CCCCCHHHHHHHhhcc--CcEEEEEECCCCCCC--ccHHHHHHHHHHH
Confidence 9999999999987541 2 7899999999999864 268999999653110 1124778999999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhch-H-hHHHHH-HhhhhhccccceeecCCccccCC
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALN-Q-TIEDIK-KFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~-~-~l~~i~-~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
+++++. ++++|+||++.+|+++|+.|+++++++++........ . .+.... ..+..++++.. ....
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 190 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAVEQS--------LLAA 190 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccccccchhhhhhccCcEEccCcc--------cccC
Confidence 999987 6999999999999999998999999998642111000 0 001111 11222233211 1124
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
...+|+++|+ |++|++||+|++. ++.+++ ++||||||||+|+.+
T Consensus 191 ~~~~v~~~~~-g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 191 TWELVRAAVP-GLRLGVWTVNDDS-------------LIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred CHHHHHHHhC-CCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCcccc
Confidence 5688999974 9999999999874 688887 999999999999864
No 25
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=1.6e-41 Score=355.38 Aligned_cols=229 Identities=25% Similarity=0.364 Sum_probs=186.1
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
.+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ ++| .
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN------------------GKG-Y 61 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC------------------CCC-c
Confidence 379999999999999999999999999999999999999999999999999999998 556 7
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||++++.+.+.. +.+. .+++|||+|+|+++++. ...++||+|.+.... ..+++.+++
T Consensus 62 i~~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~--~~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 62 VKDLTLEELKKLDAGSWFD---------EKFT-GEKIPTLEEVLDLLKDK--DLLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhhCCHHHHHhcCCCCccC---------ccCC-CCcCCCHHHHHHHHHhc--CcEEEEEECCCCCcC----hhHHHHHHH
Confidence 9999999999999875521 2232 36899999999999964 268999999764321 247889999
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCC
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
+++++++. ++++++||+++.|..+++. |+++++++......+ ...++..... ..+.+. +...
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~--~~v~~~---~~~~ 188 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--------PKDYAKKIGA--DSLHPD---FKLL 188 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--------HHHHHHHhCC--EEEccC---chhc
Confidence 99999976 6999999999999999999 999999988654221 1222222211 112221 1224
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
.+++++++|++|++|++||+|+.. ++.+++ ++||||||||+|
T Consensus 189 ~~~~i~~~~~~g~~v~~Wtvn~~~-------------~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 189 TEEVVEELKKRGIPVRLWTVNEEE-------------DMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEeCCCC
Confidence 678999999999999999999874 688887 899999999998
No 26
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=1.8e-41 Score=353.96 Aligned_cols=223 Identities=20% Similarity=0.222 Sum_probs=176.8
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~------------------~~g-~v 61 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG------------------VDL-KV 61 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC------------------CCc-ee
Confidence 48999999999999999999999999999999999999999999999999999998 667 89
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
.++||+||++++.+ .+++|||+|+|+++++. ..++||||... .++.++++
T Consensus 62 ~~~t~~eL~~l~~~------------------g~~iPtL~evl~~~~~~---~~l~iEiK~~~---------~~~~~~~~ 111 (226)
T cd08568 62 KELTYKELKKLHPG------------------GELIPTLEEVFRALPND---AIINVEIKDID---------AVEPVLEI 111 (226)
T ss_pred ecCCHHHHhhCCCC------------------CCcCCCHHHHHHhcCCC---cEEEEEECCcc---------HHHHHHHH
Confidence 99999999998865 16899999999999764 57999999643 34678899
Q ss_pred HHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHh-hhhhccccceeecCCccccCC
Q 003550 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 569 L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~-a~~v~~~~~~i~p~~~~~l~~ 646 (811)
++++++. ++|+|+|||++.|.++|+. |.++++++++........ ....+.. +..+.++...+ .. .+ ...
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~-~~~ 182 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSI--PELHEKLKLYSLHVPIDAI-GY-IG-FEK 182 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCH--HHHHHhcCCcEeccchhhh-cc-cc-ccc
Confidence 9999887 7999999999999999999 999999998643111100 1111111 22222221111 00 00 112
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
.+++|+++|++|++|++||+|++. ++..+. ++ |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDPE-------------LVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-hh-CCEEEccCccc
Confidence 478999999999999999999874 566665 55 99999999975
No 27
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=2.2e-41 Score=370.79 Aligned_cols=251 Identities=18% Similarity=0.226 Sum_probs=183.2
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+... ++++.. .
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~-v~~~~~----------~ 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRV-FPERQY----------E 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCc-cccccc----------c
Confidence 47899999999999999999999999999999999999999999999999999999995431 111111 1
Q ss_pred cccCCCHHHHhccCccccC----Ccccc-cccC--CcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISN----PYFKF-KLFR--NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~----p~~~~-~~~r--n~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.+.++||+||++|+++.|+ ||... ...+ -..+.+ ++||||+|+|+++++.+ .+++||||.+..... ...
T Consensus 70 ~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~~~-~~~ 145 (351)
T cd08608 70 DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN-QSVCSLAELLELAKRYN--ASVLLNLRRPPPNHP-YHQ 145 (351)
T ss_pred ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CeEEEEECCCcccCc-chh
Confidence 3578999999999999764 21100 0000 112334 78999999999998752 479999996531110 112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceee
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVY 637 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~ 637 (811)
.+++.+++++.++++.. ++|+++||+. ++.+|+. |++++..... .....+++ .+..+.++.
T Consensus 146 ~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---- 208 (351)
T cd08608 146 SWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGEK--------LPVASLRERGITRLNLRY---- 208 (351)
T ss_pred HHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeecccc--------chHHHHHHcCCeEEccch----
Confidence 46778889898888752 5888899876 4789988 9988652110 01122211 122222221
Q ss_pred cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 638 p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
...++++|+++|++|++|++||||++. ++..++ ++||||||||+|+.+.+..
T Consensus 209 ------~~lt~~~v~~~~~~Gl~V~vWTVN~~~-------------~~~~l~-~~GVdgIiTD~P~~l~~l~ 260 (351)
T cd08608 209 ------TQASAQEIRDYSASNLSVNLYTVNEPW-------------LYSLLW-CSGVPSVTSDASHVLRKVP 260 (351)
T ss_pred ------hhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEECCHHHHHHhh
Confidence 124578999999999999999999885 577776 9999999999999998765
No 28
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=1.5e-41 Score=353.05 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=182.4
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~v~ 61 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG------------------VNK-KVW 61 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC------------------CCC-Chh
Confidence 6999999999999999999999999999999999999999999999999999998 555 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+. .+ +++|||+|+|++++++ ..+++||||.+... ...+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~-------------~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~~----~~~~~~~v~~~l 121 (220)
T cd08579 62 DLTLEELKKLTIGENG-------------HG-AKIPSLDEYLALAKGL--KQKLLIELKPHGHD----SPDLVEKFVKLY 121 (220)
T ss_pred hCCHHHHhcCcCccCC-------------CC-CcCCCHHHHHHHhhcc--CCeEEEEECCCCCC----CHHHHHHHHHHH
Confidence 9999999999887531 22 7899999999999884 26899999976531 224788899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
+++++. ++|+|+||++..++.+++. |++++++++....++. . ...++.+++. +...++
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~~----------~~~~~~ 180 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL-----P--KTNVDFYSIE----------YSTLNK 180 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc-----c--ccCceEEeee----------hhhcCH
Confidence 999987 6999999999999999998 9999999986543221 0 1112223322 112357
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
++|+++|++|++|++||+|++. ++..++ ++|||||+||+|
T Consensus 181 ~~v~~~~~~G~~v~~wtvn~~~-------------~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 181 EFIRQAHQNGKKVYVWTVNDPD-------------DMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEeCCCC
Confidence 8999999999999999999884 678887 999999999998
No 29
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=4.2e-41 Score=356.95 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=180.7
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||+.||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g------------------ 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGAD--AIWLTVQLSKDGVPVLYRPSDLKSLTNGSG------------------ 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeEECCCCCEEEeCCCchhcccCCCC------------------
Confidence 689999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCHHhhccccccccccCC-CCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR-TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~-~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
.+.++|++||++++++.++... +..|.+.+++||||+|+|++++...++||||.+.. ..+++.++++++++++
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i~~~~~ 134 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPA-----DPQAKAVARVLERENA 134 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCc-----HHHHHHHHHHHHhcCC
Confidence 7999999999999998866322 22355544699999999999988889999996531 2578889999999876
Q ss_pred ---eEEecCCHHHHHHHHHhcCCC-----CcceeeeecCCCccCCC-cccchHH-----HhhhHHHHHhhcccccCCCcc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPS-----MTKLVFRFLGKSEIEPT-TNQTYGS-----LLKNLTFIKTFASGILVPKDY 316 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~-----~~~lv~~~~~~~~~~~~-~~~~y~~-----l~~~L~~i~~~a~gi~~~~~~ 316 (811)
.+|+||+...|+++++..|.. .....+ +.......+. ....... +...+..++.++.+. ..
T Consensus 135 ~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 209 (263)
T cd08580 135 WSRVRIYSTNADYQDALAPYPQARLFESRDVTRTR-LANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGE----GR 209 (263)
T ss_pred CCCEEEEECCHHHHHHHHhcCcccccccHHHHHHH-HHhhhcccccccCccchhhccccccccchheeeecccc----cc
Confidence 499999999999999987620 001111 0000000000 0000000 000011111111111 11
Q ss_pred cccCCCcccCCCChHHHHHHHHc-CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 317 IWPVDESLYLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 317 i~~~~~~~~l~~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
+.+ .+....+++|+.||++ |++|++||||+. ++|++++++| |||||||+|+.
T Consensus 210 ~~~----~~~l~t~~~V~~~h~~~gl~V~~WTVN~~------------~~~~~l~~~G---VDgIiTD~P~~ 262 (263)
T cd08580 210 SPV----QATLWTPAAVDCFRRNSKVKIVLFGINTA------------DDYRLAKCLG---ADAVMVDSPAA 262 (263)
T ss_pred ccc----ccccCCHHHHHHHHhcCCcEEEEEEeCCH------------HHHHHHHHcC---CCEEEeCCccc
Confidence 111 1233457899999999 999999999865 8999999999 99999999985
No 30
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.4e-41 Score=360.16 Aligned_cols=252 Identities=18% Similarity=0.129 Sum_probs=188.0
Q ss_pred ccceeecCCCCCCC--CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccC
Q 003550 406 ANLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (811)
Q Consensus 406 ~~plIIAHRGasg~--~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~ 483 (811)
.+|+||||||+++. +||||++||++|++.|||+||+|||+||||++|++||.++++++... ..|. ..+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~----~~~~------~~~ 71 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTS----IQLD------DSG 71 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCcccc----cccc------CCC
Confidence 36899999999988 99999999999999999999999999999999999998776633100 0000 015
Q ss_pred ccccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHH
Q 003550 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (811)
Q Consensus 484 ~G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~ 563 (811)
.| .+.++||+||++++++.+. ...+... ..+. .++||||+|+|+++++. ++++||||.+. ..+++
T Consensus 72 ~~-~v~~~t~~el~~l~~~~~~--~~~~~~~-~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~~-------~~~~~ 136 (265)
T cd08564 72 FK-NINDLSLDEITRLHFKQLF--DEKPCGA-DEIK-GEKIPTLEDVLVTFKDK---LKYNIELKGRE-------VGLGE 136 (265)
T ss_pred cc-chhhCcHHHHhhcccCccc--ccCcccc-cccC-CccCCCHHHHHHHhccC---cEEEEEeCCCc-------hhHHH
Confidence 56 7999999999999998763 1111111 1122 37899999999999874 68999999654 13678
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeCCh-HHHHHHHhc-cC---ceEEEEEccccchhchHhHHHHHHhhhhhccccceeec
Q 003550 564 SVMEALGNAGYNKQTALKVMIQSTDS-SVLMKLREK-TS---YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (811)
Q Consensus 564 ~v~~~L~~~g~~~~~~~~ViiqSfd~-~~L~~lk~~-p~---~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p 638 (811)
.|+++|+++++. ++|+|+||++ ++|.++++. |+ ++++++++..... ...+....+...+. ..+.+
T Consensus 137 ~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~v~~ 206 (265)
T cd08564 137 RVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYNA--TWVNF 206 (265)
T ss_pred HHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcCC--ceeee
Confidence 999999999987 7999999999 999999998 87 9999998653110 01111111221111 11211
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEe----cCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVET----FSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwt----vnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
. .. ...+++|+.+|++|+.|++|| +|++ +++..++ ++||||||||+|+.+.+++
T Consensus 207 ~-~~--~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~-------------~~~~~l~-~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 207 S-YD--FWTEEFVKKAHENGLKVMTYFDEPVNDNE-------------EDYKVYL-ELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred c-hh--hhhHHHHHHHHHcCCEEEEecCCCCCCCH-------------HHHHHHH-HcCCCEEEcCCHHHHHHhh
Confidence 1 11 135789999999999999999 3433 4677777 9999999999999999886
No 31
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=8.2e-42 Score=364.55 Aligned_cols=248 Identities=19% Similarity=0.238 Sum_probs=183.3
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG------------------GSG-L 61 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC------------------Cce-E
Confidence 689999999999999999999999999999999999999999999999999999998 556 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCC-cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRN-PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn-~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
+.++||+||++++.+.+..... +.... ..+. .++||||+|+|+.+++ ..++||+|.+.. ..+++.++
T Consensus 62 v~~~t~~el~~l~~~~~~~~~~-~~~~~~~~~~-~~~iptL~evl~~~~~----~~l~iEiK~~~~------~~~~~~v~ 129 (264)
T cd08575 62 VSDLTYAELPPLDAGYGYTFDG-GKTGYPRGGG-DGRIPTLEEVFKAFPD----TPINIDIKSPDA------EELIAAVL 129 (264)
T ss_pred EecCCHHHHHhcccCCccccCC-CCcccccCCC-CCcCCcHHHHHHhCCC----CeEEEEECCCCH------HHHHHHHH
Confidence 9999999999999886532110 00001 1122 3789999999999865 489999997643 13788999
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhc---hHh-H--HHHHHhhhhhccccceee--
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL---NQT-I--EDIKKFADSVVLSKESVY-- 637 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~---~~~-l--~~i~~~a~~v~~~~~~i~-- 637 (811)
++++++++. ++|+|+|||+.+|+++++. |+++++++.....-... ... + ...+..+-.+.+....+.
T Consensus 130 ~~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (264)
T cd08575 130 DLLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETF 205 (264)
T ss_pred HHHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEe
Confidence 999999987 6999999999999999998 98877766532100000 000 0 000000000111000000
Q ss_pred -----cCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 638 -----PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 638 -----p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
.....+...++++|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 206 TLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDEE-------------DFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred ccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCHH-------------HHHHHH-hcCCCEEEeCCccc
Confidence 000112235789999999999999999999884 688887 99999999999985
No 32
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=2.7e-41 Score=366.42 Aligned_cols=255 Identities=18% Similarity=0.197 Sum_probs=186.0
Q ss_pred cccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccccc
Q 003550 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~ 482 (811)
+-..++.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||.... ++.+
T Consensus 18 ~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~-~~~~--------- 87 (316)
T cd08610 18 TLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEV-QPES--------- 87 (316)
T ss_pred ccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCc-cccc---------
Confidence 335578999999999999999999999999999999999999999999999999999999995431 2222
Q ss_pred CccccccCCCHHHHhccCccccCCccc-cc----c--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 003550 483 GSGIFSFSLIWDEIQTLIPQISNPYFK-FK----L--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (811)
Q Consensus 483 ~~G~~v~dlT~~ELk~L~~~~~~p~~~-~~----~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~ 555 (811)
..| .+.++||+||++++++.|+.... ++ . .....+.+ ++||||+|+|+++++.+ ..++||||.+.....
T Consensus 88 ~~~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~~~ 163 (316)
T cd08610 88 ACE-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPKHP 163 (316)
T ss_pred ccc-chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCcccCc
Confidence 224 68999999999999997641000 00 0 00012333 79999999999998752 579999995421110
Q ss_pred hcCccHHHHHHHHH-HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccc
Q 003550 556 KQGMSVTNSVMEAL-GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLS 632 (811)
Q Consensus 556 ~~g~~~~~~v~~~L-~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~ 632 (811)
....+++.+++.+ +++++. +++++ ||+...+..+++. |+++.++..... .....+ .+..+.
T Consensus 164 -~~~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~~--------~~~l~~~~~~~l~-- 227 (316)
T cd08610 164 -YRHTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKVP--------IETLLKNNISILN-- 227 (316)
T ss_pred -chhHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhccccc--------HHHHHHcCCeEEc--
Confidence 0013666777776 677887 56666 5889999999998 998765432111 111111 122222
Q ss_pred cceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 633 KESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 633 ~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
+. +...++++|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.+.+..
T Consensus 228 -----~~---~~~l~~~~v~~a~~~Gl~V~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~ 282 (316)
T cd08610 228 -----LA---YKKLFSNDIRDYKAANIHTNVYVINEPW-------------LFSLAW-CSGIHSVTTNNIHLLKQLD 282 (316)
T ss_pred -----cc---hhhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCcCEEEeCCHHHHHHhh
Confidence 21 1123578999999999999999999884 577777 9999999999999997655
No 33
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5e-41 Score=352.21 Aligned_cols=229 Identities=23% Similarity=0.278 Sum_probs=184.1
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+++|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG------------------GDG-AVS 61 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC------------------CCc-chh
Confidence 6999999999999999999999999999999999999999999999999999998 555 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+.. ..+.+ ++||||+|+|+++++++ ..++||+|.+. .+..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~---------~~~~~-~~iptL~evl~~~~~~~--~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 62 DLTLAELRKLDIGSWKG---------ESYKG-EKVPTLEEYLAIVPKYG--KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred hCCHHHHhcCCCCcccC---------CCCCC-CcCCCHHHHHHHHHhcC--ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 99999999999876531 23333 78999999999998852 68999999751 2235788999999
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH-hhhhhccccceeecCCccccCC
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK-FADSVVLSKESVYPLNSAFITS 646 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~-~a~~v~~~~~~i~p~~~~~l~~ 646 (811)
++++ .. ++|+++||++.+|..+++. |+++++|+.......... ....+. .+.++.++.. . ..
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~--------~-~~ 189 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP--RPLAKSGGAAGLDLSYE--------K-KL 189 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch--hHHHHhhCceEEccccc--------c-cC
Confidence 9985 44 6999999999999999998 999999997643211000 001111 1222332211 1 14
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
.+++|+.+|++|++|++||+|++. ++.+++ ++||||||||+|+
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAE-------------DAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCCC
Confidence 678999999999999999999884 688887 8999999999996
No 34
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=9.2e-41 Score=355.12 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=182.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~------------------~~g-~v~ 61 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD------------------GTG-LVA 61 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC------------------CCc-eEe
Confidence 6899999999999999999999999999999999999999999999999999999 566 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++|+++.++++ ...+.+ ++||||+|+|+++++.. ..++||+|.... .+++++.+++
T Consensus 62 ~~t~~el~~l~~~~~~~~-------~~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 62 ELTWEELRKLNAAAKHRL-------SSRFPG-EKIPTLEEAVKECLENN--LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred cCcHHHHhhCCCCCCCCC-------ccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999999876542 123444 79999999999998752 589999997542 3678899999
Q ss_pred HhcC-CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhc-----h-----------HhHHHHHHhh-----
Q 003550 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL-----N-----------QTIEDIKKFA----- 626 (811)
Q Consensus 570 ~~~g-~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~-----~-----------~~l~~i~~~a----- 626 (811)
++++ +. ++++|+||++.+|+++|+. |+++++++++....... . .-+..+..+.
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9988 76 6999999999999999999 99999998754210000 0 0011111110
Q ss_pred -hhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHh-cCCCEEEeCC
Q 003550 627 -DSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG-AGIDGVITEF 701 (811)
Q Consensus 627 -~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~-~GVDGIiTD~ 701 (811)
..+++ ..+.+.. -..++++|+++|++|++|++||+|++. ++..++ + +||| ||||+
T Consensus 201 ~~~~~~--~~v~~~~---~~~~~~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 201 PYFLGV--SALLIHK---DDISSAYVRYWRARGIRVIAWTVNTPT-------------EKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhhcCe--eEEEech---HhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HHhCCC-eecCC
Confidence 11121 2222221 124678999999999999999999884 688887 8 9999 99997
No 35
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.2e-41 Score=357.01 Aligned_cols=237 Identities=23% Similarity=0.291 Sum_probs=190.3
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcch--hhhhcccccccccCCCCCC
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI--AQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~--~~~~~~~~~~y~~~G~~~~ 170 (811)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++ .+
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d--~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~g----------------- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGAD--YIELDLQMTKDGVLVAMHDETLDRTTNIERPG----------------- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeECCCCeEEEeCCCccccccCCCCCc-----------------
Confidence 59999999999999999999999999999 9999999999999999999999999987 44
Q ss_pred cccccccCHHhhccccccccccCC-----CCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHH
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~-----~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~ 244 (811)
.+.++|++||++++++.++..+ +..+.+ ++||||+|+|+++++ .+++||||.+..+ ..+++.+.++
T Consensus 63 --~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~iptL~evl~~~~~~~~l~IEiK~~~~~----~~~~~~v~~~ 134 (256)
T cd08601 63 --PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG--LKVPTLEEVIERYGGRANYYIETKSPDLY----PGMEEKLLAT 134 (256)
T ss_pred --eeecCcHHHHHhcCCCccccccCccccccccCC--ccCCCHHHHHHHhccCceEEEEeeCCCCC----CCHHHHHHHH
Confidence 7999999999999997755321 122334 799999999999975 7899999965322 2577889999
Q ss_pred hhhcCc---------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCc
Q 003550 245 SRSVVV---------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (811)
Q Consensus 245 lk~~~~---------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~ 315 (811)
++++++ .+|+||+.+.++.+++..| +.++++++..... . +... ..+..++.++.++.+...
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~~~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNP--NIPLVQLLWYGEG-A----ETYD---KWLDEIKEYAIGIGPSIA 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEeccCcc-c----ccch---hHHHHHHhcCeEeCCchh
Confidence 998854 4899999999999999988 6788875432211 0 1111 123444556666665432
Q ss_pred ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhh
Q 003550 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (811)
Q Consensus 316 ~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~ 392 (811)
.+ .+++|+.+|++|++|++||+|+. ++|.++++.| ||||+||+|+.+.+++
T Consensus 205 ~~-----------~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~l~~~G---vd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DA-----------DPWMVHLIHKKGLLVHPYTVNEK------------ADMIRLINWG---VDGMFTNYPDRLKEVL 255 (256)
T ss_pred hc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEeCCHHHHHHhh
Confidence 22 36799999999999999999864 8999999999 9999999999877664
No 36
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=7.6e-41 Score=363.10 Aligned_cols=252 Identities=19% Similarity=0.201 Sum_probs=185.8
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
++.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.... ++++. ..
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~-~~~~~----------~~ 94 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV-FPGRD----------AA 94 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC-ccccc----------cc
Confidence 47899999999999999999999999999999999999999999999999999999994321 00000 01
Q ss_pred cccCCCHHHHhccCccccCCccc-c----cc--cCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCc
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFK-F----KL--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~-~----~~--~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~ 559 (811)
.|.|+||+||++++++.|+.... + .. .....+.+ ++||||+|+|+++++.+ ..++||||...... ....
T Consensus 95 ~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~-~~~~ 170 (315)
T cd08609 95 GSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADN-QTVPSLSELLDLAKKHN--VSIMFDLRNENNSH-VFYS 170 (315)
T ss_pred cHhhCCHHHHhhCCCCcccCcccccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCC-ccHH
Confidence 48999999999999987641100 0 00 00011233 79999999999998752 57999999652100 0112
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeec
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p 638 (811)
.+++.+++.++++++.. +++++ ++...++++++. |++++++.... ......+..+++..
T Consensus 171 ~f~~~vl~~i~~~~~~~---~~v~~--~~~~~l~~~~~~~P~~~~~~~~~~----------~~~~~~~~~i~~~~----- 230 (315)
T cd08609 171 SFVFYTLETILKLGIPP---DKVWW--LPDEYRHDVMKMEPGFKQVYGRQK----------EMLMDGGNFMNLPY----- 230 (315)
T ss_pred HHHHHHHHHHHHcCCCc---ceEEE--eCHHHHHHHHHhCcCceeecccch----------hhHhcCCeEEeccc-----
Confidence 47788999999998752 35554 468899999998 99998764311 00111122222211
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHHhc
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNR 712 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~~~ 712 (811)
......+|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.+.+.++..
T Consensus 231 -----~~l~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 231 -----QDLSALEIKELRKDNVSVNLWVVNEPW-------------LFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred -----ccCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 123578999999999999999999884 588887 9999999999999999988654
No 37
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=1.6e-40 Score=358.80 Aligned_cols=257 Identities=16% Similarity=0.198 Sum_probs=189.1
Q ss_pred ceeecCCCCCCCCC--------CchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccc
Q 003550 408 LLVISKNGASGDYP--------SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPE 479 (811)
Q Consensus 408 plIIAHRGasg~~P--------ENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~ 479 (811)
+.||||||+++.+| |||++||++|++.|||+||+|||+||||++||+||.+|+|+ +
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 57999999999999 99999999999999999999999999999999999999984 5
Q ss_pred cccCccccccCCCHHHHhccCccccCC-cccccccCCcCCCCC---CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 003550 480 IMAGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLFRNPKNKNA---GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (811)
Q Consensus 480 ~~~~~G~~v~dlT~~ELk~L~~~~~~p-~~~~~~~rn~~~~~~---~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~ 555 (811)
++| .|.++||+||++|+...... |... .+. ..+.+. ++||||+|+|+.++.. .+++||||.+.....
T Consensus 66 ---~~~-~v~~lt~~eL~~ld~~~~~~~~~~~-~~~-~~~~g~~~~~~iptL~evl~~~~~~---~~l~IEiK~~~~~~~ 136 (286)
T cd08606 66 ---TDV-PIHDLTLEQFLHLSRMKYTVDFKKK-GFK-GNSRGHSIQAPFTTLEELLKKLPKS---VGFNIELKYPMLHEA 136 (286)
T ss_pred ---CCC-ccccCCHHHHHhhhccccccccccc-CCC-CcccccccccCCCcHHHHHHhCCCc---cceEEEEecCCcchh
Confidence 445 79999999999997432110 1000 000 111221 3689999999999654 689999997542210
Q ss_pred hc---------CccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccch---hchHhHHHH
Q 003550 556 KQ---------GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD---ALNQTIEDI 622 (811)
Q Consensus 556 ~~---------g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d---~~~~~l~~i 622 (811)
.. ...+++.++++++++++. ++|+|+|||+++|+.++++ |+++++++++..... .....+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEA 212 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHH
Confidence 00 013667899999999886 6999999999999999999 999999997643111 111112222
Q ss_pred HHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEeC
Q 003550 623 KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (811)
Q Consensus 623 ~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD 700 (811)
..++...+.. .+.+.. .++...+.+|+.+|++|+.|++||+ |++. ++.+++ ++||||||||
T Consensus 213 ~~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~-------------~~~~l~-~~GVdgIiTD 275 (286)
T cd08606 213 IRFAKQWNLL--GLVSAA-EPLVMCPRLIQVVKRSGLVCVSYGVLNNDPE-------------NAKTQV-KAGVDAVIVD 275 (286)
T ss_pred HHHHHHCCCe--EEEech-HHhhhChHHHHHHHHCCcEEEEECCccCCHH-------------HHHHHH-HcCCCEEEEC
Confidence 2344333331 121111 1223467899999999999999999 6553 577777 9999999999
Q ss_pred ChHHHHHHHH
Q 003550 701 FPMTAARYRR 710 (811)
Q Consensus 701 ~P~~~~~~~~ 710 (811)
+|+.+++.++
T Consensus 276 ~p~~~~~~~~ 285 (286)
T cd08606 276 SVLAIRRGLT 285 (286)
T ss_pred CHHHHHHHhc
Confidence 9999998764
No 38
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.4e-40 Score=359.80 Aligned_cols=260 Identities=17% Similarity=0.236 Sum_probs=191.5
Q ss_pred eeecCCCCC--------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccccc
Q 003550 409 LVISKNGAS--------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480 (811)
Q Consensus 409 lIIAHRGas--------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~ 480 (811)
+||||||++ +.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+.+.. ...
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~---------~~~ 71 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG---------SDE 71 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc---------ccc
Confidence 589999997 799999999999999999999999999999999999999999999985432 111
Q ss_pred ccCccccccCCCHHHHhccCccccCCcccccc------cCC---cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchh
Q 003550 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKL------FRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551 (811)
Q Consensus 481 ~~~~G~~v~dlT~~ELk~L~~~~~~p~~~~~~------~rn---~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~ 551 (811)
..+.+.++.++||+||++|+.+.+.++..... .+. +.+. .++||||+|+|+++++. .+++||||.+.
T Consensus 72 ~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evL~~~~~~---~~l~IEiK~~~ 147 (293)
T cd08572 72 GELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDE-HDPFPTLQEVLEQVPKD---LGFNIEIKYPQ 147 (293)
T ss_pred CcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhh-ccCCCCHHHHHHhCCCc---cceEEEEecCC
Confidence 22333489999999999999886532110000 000 1112 26899999999999764 68999999765
Q ss_pred HHHhh--------cCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccc-----hhchH
Q 003550 552 YLAEK--------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-----DALNQ 617 (811)
Q Consensus 552 ~~~~~--------~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~-----d~~~~ 617 (811)
..... ....+++.++++++++++. ++|+|+|||+++|..+++. |+++++++++.... +....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 223 (293)
T cd08572 148 LLEDGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRR 223 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhh
Confidence 32210 0124778999999999987 7999999999999999999 99999999865322 22222
Q ss_pred hHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCC
Q 003550 618 TIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (811)
Q Consensus 618 ~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVD 695 (811)
.+..+..++...+.. .+.+. ..++...+++|+.+|++|+.|++||+ |++ +++..+. ++|||
T Consensus 224 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~-------------~~~~~l~-~~GVd 286 (293)
T cd08572 224 SLQAAVNFALAEGLL--GVVLH-AEDLLKNPSLISLVKALGLVLFTYGDDNNDP-------------ENVKKQK-ELGVD 286 (293)
T ss_pred hHHHHHHHHHHCCCe--EEEec-hHHhhcCcHHHHHHHHcCcEEEEECCCCCCH-------------HHHHHHH-HcCCC
Confidence 344444555443332 12111 12233467899999999999999999 444 2566665 99999
Q ss_pred EEEeCCh
Q 003550 696 GVITEFP 702 (811)
Q Consensus 696 GIiTD~P 702 (811)
|||||+|
T Consensus 287 gIiTD~~ 293 (293)
T cd08572 287 GVIYDRV 293 (293)
T ss_pred EEEecCC
Confidence 9999996
No 39
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=2e-40 Score=351.43 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=179.1
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.++.+...
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~--------- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVY--GLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE--------- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc---------
Confidence 3689999999999999999999999999999 99999999999999999999999999998866554422
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.++|++||++++++.++..+.+ .|.+ ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~--~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~ 145 (252)
T cd08574 70 --RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN--QSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQ 145 (252)
T ss_pred --chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC--CCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHH
Confidence 689999999999999987643221 3445 799999999999964 569999996542111223
Q ss_pred hHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hccccc
Q 003550 236 SMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGIL 311 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~ 311 (811)
.+++.++++++++++ .+++||+. .++.+++..| ..++.+.. .. .. ..++. .+.++.
T Consensus 146 ~~~~~v~~~l~~~~~~~~~v~~s~~~-~~~~~~~~~p--~~~~~~~~--~~--------~~-------~~~~~~~~~~~~ 205 (252)
T cd08574 146 SYVNITLDTILASGIPQHQVFWLPDE-YRALVRKVAP--GFQQVSGR--KL--------PV-------ESLRENGISRLN 205 (252)
T ss_pred HHHHHHHHHHHHcCCCcccEEEccHH-HHHHHHHHCC--CCeEeecc--cc--------ch-------HHHHhcCCeEEc
Confidence 578899999999876 24555554 4799999988 55555311 10 00 11111 244444
Q ss_pred CCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc
Q 003550 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (811)
Q Consensus 312 ~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD 383 (811)
+.+.. ...++|+.+|++|++|++||||+. ++|++++++| |||||||
T Consensus 206 ~~~~~-----------~~~~~v~~~~~~g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD 251 (252)
T cd08574 206 LEYSQ-----------LSAQEIREYSKANISVNLYVVNEP------------WLYSLLWCSG---VQSVTTN 251 (252)
T ss_pred cCccc-----------CCHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEecC
Confidence 43322 236799999999999999999865 8999999999 9999999
No 40
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=6e-40 Score=344.33 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=176.7
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||++|.+||||++||++|++.|+|+||||||+||||++||+||.+++|+|+ ++|..+.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~------------------~~~~~v~ 62 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG------------------KDGLIID 62 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC------------------CCCCEec
Confidence 6899999999999999999999999999999999999999999999999999998 5522799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC-CCceEEEEecchhHHHhhcCccHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~-~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~ 568 (811)
++||+||++++.+.. +.+++|||+|+|+++++.. ..+.++||+|..... ..+++.+.++
T Consensus 63 ~~t~~eL~~l~~~~~---------------~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-----~~~~~~v~~~ 122 (234)
T cd08570 63 DSTWDELSHLRTIEE---------------PHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-----EILFKLIAEM 122 (234)
T ss_pred cCCHHHHhhcccccC---------------CCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-----HHHHHHHHHH
Confidence 999999999987621 1258999999999998641 125899999964321 1366788888
Q ss_pred HHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHh---hhhhccccceeecCCcccc
Q 003550 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF---ADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 569 L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~---a~~v~~~~~~i~p~~~~~l 644 (811)
+++++......+||+|+||++..++.+++. |+++++++..... ....+..+ +..+.+....+ +.
T Consensus 123 i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~ 190 (234)
T cd08570 123 LAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD------YARHFLNYSEKLVGISMHFVSL------WG 190 (234)
T ss_pred HHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH------HHHHHhccccccceEEeeeehh------hc
Confidence 888753211126999999999999999998 9999998864321 01111111 11111111000 00
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
...+++|+++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 191 ~~~~~~v~~~~~~gl~v~~wTvn~~~-------------~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 191 PFGQAFLPELKKNGKKVFVWTVNTEE-------------DMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred ccCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEeCCC
Confidence 13678999999999999999999884 688887 999999999998
No 41
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.7e-40 Score=352.47 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=186.0
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCC-cCCCccccccccccCcccc
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS-KFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~-~f~~r~~~~~~~~~~~G~~ 487 (811)
.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+.... .+. ....| .
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~---------~~~~~-~ 71 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWL---------PYEGP-A 71 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcc---------cccCc-c
Confidence 589999999999999999999999999999999999999999999999999987642110 000 00124 8
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCc---CCCCCCCCCCHHHHHHHHHhcC-CCceEEEEecchhHHH--hhcCccH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNP---KNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLA--EKQGMSV 561 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~---~~~~~~~ipTL~E~L~~~k~~~-~~~gi~IEiK~~~~~~--~~~g~~~ 561 (811)
|.++||+||++|+.+.+.+-+.+ ..+.+ .+.+ +++|||+|+|+++++.+ ..++++||+|.+.... ...+..+
T Consensus 72 v~~~t~~el~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 149 (263)
T cd08567 72 LYELTLAEIKQLDVGEKRPGSDY-AKLFPEQIPVPG-TRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEF 149 (263)
T ss_pred hhcCCHHHHHhcCCCccccCcCc-ccCCCccccCcc-ccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHH
Confidence 99999999999998866311100 01111 1112 68999999999999742 1268999999654220 0012357
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCC
Q 003550 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640 (811)
Q Consensus 562 ~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~ 640 (811)
++.++++++++++. ++|+|+||++++|+.+++. |++++++++..... ..+.+. +...+. ..+.+.
T Consensus 150 ~~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~----~~~~~~---~~~~~~--~~~~~~- 215 (263)
T cd08567 150 VDAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL----GNLPRA---AKKLGA--DIWSPY- 215 (263)
T ss_pred HHHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc----cCHHHH---HHHhCC--cEEecc-
Confidence 88999999999987 6999999999999999998 99999999864310 011111 111222 122221
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 641 ~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+...++++++.+|++|+.|++||+|+.. ++..++ ++||||||||+|+
T Consensus 216 --~~~~~~~~i~~~~~~G~~v~vwtvn~~~-------------~~~~~~-~~Gvdgi~TD~P~ 262 (263)
T cd08567 216 --FTLVTKELVDEAHALGLKVVPWTVNDPE-------------DMARLI-DLGVDGIITDYPD 262 (263)
T ss_pred --hhhcCHHHHHHHHHCCCEEEEecCCCHH-------------HHHHHH-HcCCCEEEcCCCC
Confidence 1234678999999999999999999773 577776 9999999999996
No 42
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=3.6e-40 Score=356.82 Aligned_cols=261 Identities=19% Similarity=0.201 Sum_probs=183.3
Q ss_pred eeecCCCCC-------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccc
Q 003550 409 LVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (811)
Q Consensus 409 lIIAHRGas-------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~ 481 (811)
+.|||||++ +.+||||++||+.|++.|||+||||||+||||++||+||.+|+|+|+.... .+..
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~---------~~~~ 71 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD---------SDRD 71 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc---------cCcc
Confidence 469999984 899999999999999999999999999999999999999999999873210 0000
Q ss_pred cCccccccCCCHHHHhccCccccCC-ccc-cc-ccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhh--
Q 003550 482 AGSGIFSFSLIWDEIQTLIPQISNP-YFK-FK-LFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK-- 556 (811)
Q Consensus 482 ~~~G~~v~dlT~~ELk~L~~~~~~p-~~~-~~-~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~-- 556 (811)
.+.+..|.++||+||++++++.+.. +.. +. ..++......++||||+|+|+++++. .+++||||.+......
T Consensus 72 ~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~lnIEiK~~~~~~~~~~ 148 (290)
T cd08607 72 DLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPED---VGFNIEIKWPQQQKDGSW 148 (290)
T ss_pred ceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCc---cceEEEEecCcccccccc
Confidence 1112379999999999999875321 110 00 00000111136899999999999764 6899999976421100
Q ss_pred --------cCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccc------hhchHhHHH
Q 003550 557 --------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR------DALNQTIED 621 (811)
Q Consensus 557 --------~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~------d~~~~~l~~ 621 (811)
....+++.+++.+.+++.. ++|+|+||++.+|..++.+ |.+++++++..... +.....+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 224 (290)
T cd08607 149 ESELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEI 224 (290)
T ss_pred ccccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHH
Confidence 0012677889999888776 6999999999999999998 99999999854311 111111222
Q ss_pred HHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 622 IKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 622 i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
...++...... .+.. ...++...+++|+.+|++|+.|++||+ |++. ++.+++ ++|||||||
T Consensus 225 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVdgIiT 287 (290)
T cd08607 225 AVNFAQAEELL--GVNL-HSEDLLKDPSQIELAKSLGLVVFCWGDDLNDPE-------------NRKKLK-ELGVDGLIY 287 (290)
T ss_pred HHHHHHHcCCc--eeEe-chhhhhcChHHHHHHHHcCCEEEEECCCCCCHH-------------HHHHHH-HcCCCEEEe
Confidence 22333332221 1111 112233567899999999999999999 6553 577776 999999999
Q ss_pred CCh
Q 003550 700 EFP 702 (811)
Q Consensus 700 D~P 702 (811)
|++
T Consensus 288 D~~ 290 (290)
T cd08607 288 DRI 290 (290)
T ss_pred cCC
Confidence 985
No 43
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=2.7e-40 Score=358.65 Aligned_cols=248 Identities=11% Similarity=0.040 Sum_probs=186.0
Q ss_pred CCCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCC
Q 003550 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (811)
Q Consensus 88 ~~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~ 167 (811)
-+..|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+.++++.+.
T Consensus 19 ~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~~~------ 90 (316)
T cd08610 19 LGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAH--GLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESACE------ 90 (316)
T ss_pred cCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEeCCCccccccCCCCcccccccc------
Confidence 3556899999999999999999999999999999 99999999999999999999999999998766655332
Q ss_pred CCCcccccccCHHhhccccccccccCC-------------CCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhh
Q 003550 168 PTPGWFSIDYTLNDLSNIILNQGVYSR-------------TDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQ 232 (811)
Q Consensus 168 ~~~g~~v~d~t~~eL~~l~~~~~~~~~-------------~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~ 232 (811)
.+.++|++||++++++.++... ...|.| ++||||+|+|+++++ ..++||||.+.....
T Consensus 91 -----~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~--e~IPTLeEvL~~~~~~~~~l~IEIK~~~~~~~ 163 (316)
T cd08610 91 -----NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN--QSIPKLSNFLRLAEKENKLVIFDLYRPPPKHP 163 (316)
T ss_pred -----chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC--CCCCCHHHHHHHhHhcCceEEEEeCCCcccCc
Confidence 6899999999999999776321 012334 799999999999965 568999996421111
Q ss_pred cCchHHHHHHHHh-hhcCc--eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcc
Q 003550 233 HNLSMRSFVLSVS-RSVVV--NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FAS 308 (811)
Q Consensus 233 ~~~~~~~~l~~~l-k~~~~--~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~ 308 (811)
....+++.++..+ +++++ .++.||+...++.+++..| ..+..+... . .+..... .+.
T Consensus 164 ~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~P--~~~~~l~~~--~---------------~~~~l~~~~~~ 224 (316)
T cd08610 164 YRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVAP--GFKQHVGRK--V---------------PIETLLKNNIS 224 (316)
T ss_pred chhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHCc--chhhhhccc--c---------------cHHHHHHcCCe
Confidence 1123566677765 66665 2555799999999999988 444332110 0 0111111 234
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
++.++...+ ..++|+++|++|++|++||||+. ++|+++++.| |||||||+|+.+
T Consensus 225 ~l~~~~~~l-----------~~~~v~~a~~~Gl~V~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l 278 (316)
T cd08610 225 ILNLAYKKL-----------FSNDIRDYKAANIHTNVYVINEP------------WLFSLAWCSG---IHSVTTNNIHLL 278 (316)
T ss_pred EEccchhhC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---cCEEEeCCHHHH
Confidence 444433222 36799999999999999999865 8999999999 999999999987
Q ss_pred chhhhhh
Q 003550 389 SAAVDCF 395 (811)
Q Consensus 389 ~~~~~~~ 395 (811)
.+...-.
T Consensus 279 ~~~~~~~ 285 (316)
T cd08610 279 KQLDHPH 285 (316)
T ss_pred HHhhchh
Confidence 6555433
No 44
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1e-39 Score=345.72 Aligned_cols=243 Identities=19% Similarity=0.217 Sum_probs=184.5
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ +.| .+.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD------------------GTG-PVA 61 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC------------------CCC-chh
Confidence 6899999999999999999999999999999999999999999999999999999 455 799
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++||+||++++.+.+.... .+......+. .+++|||+|+|+++++ ..++||+|.+. ..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~~~-~~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-------~~~~~~~~~~l 128 (249)
T cd08561 62 DLTLAELRRLDAGYHFTDD-GGRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-------PAAAAALADLI 128 (249)
T ss_pred hCCHHHHhhcCcCccccCc-cccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-------hhHHHHHHHHH
Confidence 9999999999987552100 0000001122 2689999999999865 48999999753 13678999999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHH--hhhhhcccccee-ecCC-cccc
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKK--FADSVVLSKESV-YPLN-SAFI 644 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~--~a~~v~~~~~~i-~p~~-~~~l 644 (811)
+++++. ++++|+||+..+|..+++. |+++++++.+... + +..... +...+......+ ++.. .++.
T Consensus 129 ~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 129 ERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA-A-----FVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred HHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH-H-----HHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 999876 7999999999999999999 9999988753310 0 000000 000000100111 1111 1122
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~ 708 (811)
...+++|+.+|++|+.|++||+|+.. ++..++ ++||||||||+|+++.++
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTVN~~~-------------~~~~l~-~~gVdgIiTD~p~~~~~~ 248 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTVNDPA-------------EMRRLL-DLGVDGIITDRPDLLLEV 248 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHhh
Confidence 34679999999999999999999874 688887 999999999999998875
No 45
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=1e-39 Score=354.57 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=185.7
Q ss_pred cCCCCCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCC
Q 003550 87 LTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNG 166 (811)
Q Consensus 87 l~~~~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G 166 (811)
++..+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 22 ~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~g------------- 86 (300)
T cd08612 22 KSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTD--MLELDVHLTKDGQVVVSHDENLLRSCGVDK------------- 86 (300)
T ss_pred ccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECcCCeEEEECCccccccCCCCc-------------
Confidence 34668899999999999999999999999999999 999999999999999999999999999775
Q ss_pred CCCCcccccccCHHhhccccccccc-----cCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHH
Q 003550 167 VPTPGWFSIDYTLNDLSNIILNQGV-----YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFV 241 (811)
Q Consensus 167 ~~~~g~~v~d~t~~eL~~l~~~~~~-----~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l 241 (811)
.|.++|++||++++++..+ .+++..|.| ++||||+|+|++++...++||||.+. ..+++.+
T Consensus 87 ------~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g--~~IPtL~EvL~~~~~~~lnIEiK~~~------~~~~~~v 152 (300)
T cd08612 87 ------LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD--RRIPLLEEVFEAFPDTPINIDIKVEN------DELIKKV 152 (300)
T ss_pred ------ccccCCHHHHhhccccccccccCCccccccCCC--CCCCCHHHHHHhCCCCeEEEEECCCc------hHHHHHH
Confidence 7999999999999543211 112344555 89999999999998888999999753 1377889
Q ss_pred HHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCC--------CccCCCcccchHHHhhhH--HHHHhhcc
Q 003550 242 LSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGK--------SEIEPTTNQTYGSLLKNL--TFIKTFAS 308 (811)
Q Consensus 242 ~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~--------~~~~~~~~~~y~~l~~~L--~~i~~~a~ 308 (811)
++++++++. .+++||+.+.|+.+++..| +.++.+..-.. ....+........+.... ..++.+..
T Consensus 153 ~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (300)
T cd08612 153 SDLVRKYKREDITVWGSFNDEIVKKCHKENP--NIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFP 230 (300)
T ss_pred HHHHHHcCCCCcEEEEeCCHHHHHHHHHhCC--CccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhhhccc
Confidence 999998876 4999999999999999988 56666521000 000000000000000000 00000000
Q ss_pred c--ccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 309 G--ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 309 g--i~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
. ........++. .+....+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|+
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~ 292 (300)
T cd08612 231 KSMSRLNRFVLFLI---DWLLMRPSLFRHLQKRGIQVYGWVLNDE------------EEFERAFELG---ADGVMTDYPT 292 (300)
T ss_pred ccccccccceeccc---ccccCCHHHHHHHHHCCCEEEEeecCCH------------HHHHHHHhcC---CCEEEeCCHH
Confidence 0 00000001111 1223357899999999999999999865 8999999999 9999999999
Q ss_pred Ccchhh
Q 003550 387 TPSAAV 392 (811)
Q Consensus 387 ~a~~~~ 392 (811)
.+.+++
T Consensus 293 ~l~~~l 298 (300)
T cd08612 293 KLREFL 298 (300)
T ss_pred HHHHHH
Confidence 877654
No 46
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=1.4e-39 Score=342.74 Aligned_cols=236 Identities=23% Similarity=0.239 Sum_probs=180.4
Q ss_pred eeecCCCCCCC-CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 409 lIIAHRGasg~-~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
+||||||+++. +||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~ 61 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN------------------GKG-K 61 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC------------------CCC-c
Confidence 48999999999 999999999999999999999999999999999999999999999 566 7
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++||+||++++.+.++ ..+.+ ++||||+|+|+++++. ..++||+|.. ..+.+++
T Consensus 62 v~~~t~~el~~l~~~~~~----------~~~~~-~~iptL~evl~~~~~~---~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 62 VSDLTLAEIRKLRLKDGD----------GEVTD-EKVPTLEEALAWAKGK---ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhhCcHHHHHhCCcCCCc----------CCCCC-CCCCCHHHHHHhhhcC---cEEEEEECch----------HHHHHHH
Confidence 999999999999998653 22333 7999999999999885 6899999965 1356889
Q ss_pred HHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccC-
Q 003550 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT- 645 (811)
Q Consensus 568 ~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~- 645 (811)
+++++++. ++|+|+||++++|+.+++. |++++++++.....+ ..........+.+ ..+.+. +..
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~--~~~~~~---~~~~ 183 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNL--LAFEIT---FDDL 183 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccce--EEEEEe---cccc
Confidence 99999987 6999999999999999999 999999998653111 0001111111111 112221 111
Q ss_pred CCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCCh
Q 003550 646 SATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 646 ~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
.....+.++|++ |++|++||+|++....--....|...++..++ ++||||||||+|
T Consensus 184 ~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 184 DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 245678888887 99999999996421000001112234677777 999999999998
No 47
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=4.7e-40 Score=356.91 Aligned_cols=246 Identities=12% Similarity=0.099 Sum_probs=187.8
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|.||||||+++.+||||+.||+.|++.|+| +||||||+||||++||+||.+|+||||+.+.++...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVV--VFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc-----------
Confidence 4799999999999999999999999999999 999999999999999999999999999876322211
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.|.|+|++||++++++.++..+.+ .|.+ ++||||+|+|+.+++ ..++||||.+........
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~ 170 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADN--QTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYS 170 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHH
Confidence 12589999999999999876643211 2334 799999999999965 458999997531111224
Q ss_pred hHHHHHHHHhhhcCce--EEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCC
Q 003550 236 SMRSFVLSVSRSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~~--~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~ 313 (811)
++...++++++++++. .+.+++...++.+++..| ..+.++... . ...+..+.++.++
T Consensus 171 ~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~P--~~~~~~~~~-----~--------------~~~~~~~~~i~~~ 229 (315)
T cd08609 171 SFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKMEP--GFKQVYGRQ-----K--------------EMLMDGGNFMNLP 229 (315)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhCc--Cceeecccc-----h--------------hhHhcCCeEEecc
Confidence 5778889999998852 223457888999999887 455543110 0 0011123334433
Q ss_pred CcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 314 ~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
+..+ ..++|+.+|++|++|++||||+. ++|+++++.| |||||||+|+.+.+.++
T Consensus 230 ~~~l-----------~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l~~~~~ 283 (315)
T cd08609 230 YQDL-----------SALEIKELRKDNVSVNLWVVNEP------------WLFSLLWCSG---VSSVTTNACQLLKDMSK 283 (315)
T ss_pred cccC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhhh
Confidence 3222 35799999999999999999864 8999999999 99999999999888887
Q ss_pred hhhcc
Q 003550 394 CFAHL 398 (811)
Q Consensus 394 ~~~~~ 398 (811)
-+..+
T Consensus 284 ~~~~~ 288 (315)
T cd08609 284 PIWLL 288 (315)
T ss_pred hhhhC
Confidence 66555
No 48
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=9.5e-40 Score=352.16 Aligned_cols=253 Identities=17% Similarity=0.191 Sum_probs=182.4
Q ss_pred eecCCCCCC-----------CCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCcccccc
Q 003550 410 VISKNGASG-----------DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP 478 (811)
Q Consensus 410 IIAHRGasg-----------~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~ 478 (811)
||||||+.. .+||||++||++|++.|||+||||||+||||+|||+||.+|+|+++...
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc-----------
Confidence 799999654 3569999999999999999999999999999999999999999987110
Q ss_pred ccccCccccccCCCHHHHhccCccccCCccc----ccccCCcC---C--CCCCCCCCHHHHHHHHHhcCCCceEEEEecc
Q 003550 479 EIMAGSGIFSFSLIWDEIQTLIPQISNPYFK----FKLFRNPK---N--KNAGKFMKLSDFLEMAKNANSLSGVLISIEN 549 (811)
Q Consensus 479 ~~~~~~G~~v~dlT~~ELk~L~~~~~~p~~~----~~~~rn~~---~--~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~ 549 (811)
..| .|.++||+||++|+++.+..+.. +.+...+. + ...++||||+|+|++++.. .+++||||.
T Consensus 71 ----~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~l~IEiK~ 142 (282)
T cd08605 71 ----ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPS---LGFNIELKF 142 (282)
T ss_pred ----Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCC---ccEEEEEec
Confidence 245 79999999999999876532100 00000000 0 1237899999999999654 689999996
Q ss_pred hhHHH-hhcC-ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEcccc---chhchHhHHHHH
Q 003550 550 AVYLA-EKQG-MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIK 623 (811)
Q Consensus 550 ~~~~~-~~~g-~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~---~d~~~~~l~~i~ 623 (811)
+.... .... ..++++++++++++++. ++|+|+|||+.+|.+++++ |+++++++++... .+.....+....
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~ 218 (282)
T cd08605 143 GDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAI 218 (282)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHH
Confidence 53210 0000 11356788888888876 6999999999999999999 9999999986421 122122223333
Q ss_pred HhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEec--CCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 624 KFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 624 ~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtv--nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.++..++. ..+.+.. ..+...+++|+++|++|+.|++||+ |++. ++.+++ ++||||||||+
T Consensus 219 ~~~~~~~~--~~~~~~~-~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~-------------~~~~l~-~~GVdgIiTD~ 281 (282)
T cd08605 219 QVALEGGL--QGIVSEV-KVLLRNPTAVSLVKASGLELGTYGKLNNDAE-------------AVERQA-DLGVDGVIVDH 281 (282)
T ss_pred HHHHHcCC--ceEEecH-HHhhcCcHHHHHHHHcCcEEEEeCCCCCCHH-------------HHHHHH-HcCCCEEEeCC
Confidence 33333333 1222221 1222467899999999999999998 7663 578887 99999999998
Q ss_pred h
Q 003550 702 P 702 (811)
Q Consensus 702 P 702 (811)
+
T Consensus 282 ~ 282 (282)
T cd08605 282 V 282 (282)
T ss_pred C
Confidence 6
No 49
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.1e-39 Score=340.91 Aligned_cols=222 Identities=16% Similarity=0.210 Sum_probs=166.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGAR--FVEFDVQLSADGVPVVFHDDTLLRLTGVEG-------------------L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEECCCccccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhhcCchHHHHHHHHhhhcC-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV- 249 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~- 249 (811)
+.++|++||+++++..+. +....|.+ ++||||+|+|++++. ..++||+|.+.... ..+.+.+..+++..+
T Consensus 60 v~~~t~~el~~l~~~~~~-~~~~~~~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~~~ 133 (229)
T cd08581 60 LHELEDAELDSLRVAEPA-RFGSRFAG--EPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKVLRALPA 133 (229)
T ss_pred eccCCHHHHhhcccccCc-ccccccCC--ccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHHHHHHHh
Confidence 999999999999875432 22345655 799999999999864 57999999765321 223334444444432
Q ss_pred ---ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccC
Q 003550 250 ---VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYL 326 (811)
Q Consensus 250 ---~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l 326 (811)
-.+|+||+...|+++++. | ..++.+++..... .. .. .+..+++ .++.+.. . +
T Consensus 134 ~~~~~~i~SF~~~~l~~~r~~-~--~~~~~~l~~~~~~---------~~----~~----~~~~~~~--~~~~~~~--~-~ 188 (229)
T cd08581 134 VAAQRVLISFDYDLLALAKQQ-G--GPRTGWVLPDWDD---------AS----LA----EADELQP--DYLFCDK--N-L 188 (229)
T ss_pred ccCCeEEEeCCHHHHHHHHhc-C--CCCeEEEeccCCh---------HH----HH----HHHhhCC--CEEeccc--c-c
Confidence 358999999999999998 6 5666654321100 00 01 1111211 1111110 0 1
Q ss_pred CCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 327 ~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
...++++|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 189 ---~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 189 ---LPDTGDLWAGTWKWVIYEVNEP------------AEALALAARG---VALIETDNI 229 (229)
T ss_pred ---ChhhHHHHhCCceEEEEEcCCH------------HHHHHHHHhC---CcEEEcCCC
Confidence 1358889999999999999875 8999999999 999999998
No 50
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2.9e-39 Score=342.24 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=177.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d--~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~~----------------- 67 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHR--MIEFDAKLSADGEIFLLHDDTLERTSNGWG----------------- 67 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCC--EEEEEeeECCCCCEEEECCCcccccCCCCC-----------------
Confidence 5899999999999999999999999999999 999999999999999999999999998875
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~ 248 (811)
.+.++||+||++++++.++ ...|.+ ++||||+|+|++++. ..++||+|...... ..+...+..+.+..
T Consensus 68 --~v~~~t~~el~~l~~~~~~---~~~~~~--~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~ 137 (249)
T PRK09454 68 --VAGELTWQDLAQLDAGSWF---SAAFAG--EPLPTLSQVAARCRAHGMAANIEIKPTTGRE---AETGRVVALAARAL 137 (249)
T ss_pred --chhhCCHHHHHhcCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---hhHHHHHHHHHHHH
Confidence 7899999999999998754 345555 799999999999853 56899999542111 12233333333332
Q ss_pred -----CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCC
Q 003550 249 -----VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDE 322 (811)
Q Consensus 249 -----~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~ 322 (811)
+..+++||+...|+.+++..| ..+..+++.... ..+. ...+.. +.++.+.+.
T Consensus 138 ~~~~~~~v~v~SF~~~~l~~l~~~~p--~~~~~~l~~~~~-------~~~~------~~~~~~~~~~~~~~~~------- 195 (249)
T PRK09454 138 WAGAAVPPLLSSFSEDALEAARQAAP--ELPRGLLLDEWP-------DDWL------ELTRRLGCVSLHLNHK------- 195 (249)
T ss_pred hcCCCCCEEEEeCCHHHHHHHHHhCC--CCcEEEEecccc-------ccHH------HHHHhcCCeEEecccc-------
Confidence 235899999999999999988 677776442111 1111 111111 223333222
Q ss_pred cccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 323 ~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
...+.+|+.+|++|++|++||||++ ++|+++++.| ||||+||+|+.+...
T Consensus 196 ----~~~~~~v~~~~~~g~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~p~~~~~~ 245 (249)
T PRK09454 196 ----LLDEARVAALKAAGLRILVYTVNDP------------ARARELLRWG---VDCICTDRIDLIGPD 245 (249)
T ss_pred ----cCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCChHhcCcc
Confidence 2246799999999999999999865 8999999999 999999999976544
No 51
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=8.9e-40 Score=358.20 Aligned_cols=241 Identities=13% Similarity=0.094 Sum_probs=182.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||+.||++|++.|+| +||+|||+||||++||+||.+|+||||+.+.+++++..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD--~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~--------- 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVY--GLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE--------- 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccccCCCCcccccccc---------
Confidence 3789999999999999999999999999999 99999999999999999999999999998866655433
Q ss_pred cccccccCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~-------------~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~ 235 (811)
.+.++||+||++++++.++..+.+ .|.| ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~ 145 (351)
T cd08608 70 --DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN--QSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQ 145 (351)
T ss_pred --ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC--CCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchh
Confidence 568999999999999986643221 3444 799999999999975 468999996431111123
Q ss_pred hHHHHHHHHhhhcCc----eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccc
Q 003550 236 SMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGI 310 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~----~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi 310 (811)
.+++.+++++++++. .+++||+. ++.+++..| ..++.. ... . ....++. .+.++
T Consensus 146 ~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P--~~~~~~---~~~--~------------~~~~~~~~~~~~l 204 (351)
T cd08608 146 SWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAP--GFQQTS---GEK--L------------PVASLRERGITRL 204 (351)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCC--CCeeec---ccc--c------------hHHHHHHcCCeEE
Confidence 566778888887765 35577765 477888887 444321 000 0 0111221 23444
Q ss_pred cCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcch
Q 003550 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (811)
Q Consensus 311 ~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~ 390 (811)
.+++..+ ..++|+++|++|++|++||||+. ++|+++++.| ||||+||+|+.+.+
T Consensus 205 ~~~~~~l-----------t~~~v~~~~~~Gl~V~vWTVN~~------------~~~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 205 NLRYTQA-----------SAQEIRDYSASNLSVNLYTVNEP------------WLYSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred ccchhhc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEECCHHHHHH
Confidence 4443322 36799999999999999999864 8999999999 99999999998876
Q ss_pred hhh
Q 003550 391 AVD 393 (811)
Q Consensus 391 ~~~ 393 (811)
...
T Consensus 259 l~~ 261 (351)
T cd08608 259 VPF 261 (351)
T ss_pred hhh
Confidence 554
No 52
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=7.1e-39 Score=334.65 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=177.5
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad--~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVR--WVEFDVKLSGDGTLVLIHDDTLDRTTNGSG-------------------A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEeECCCCCEEEEcCCCCccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999998765 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++.++ .+.|.+ ++||||+|+|+++++ ..++||||.+... ...+++.+++++++++.
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~--~~iptl~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 131 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG--EPIPTLADVLELARELGLGLNLEIKPDPGD---EALTARVVAAALRELWPH 131 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC--CCCCCHHHHHHHHHhcCCEEEEEECCCCCc---cHHHHHHHHHHHHHhcCC
Confidence 999999999999987643 334444 799999999999964 5799999965421 24567788889888865
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+.+++..| ..++.+++.... ..+..+ +..+ .+.++.+...+
T Consensus 132 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~-------~~~~~~---~~~~--~~~~~~~~~~~----------- 186 (229)
T cd08562 132 ASKLLLSSFSLEALRAARRAAP--ELPLGLLFDTLP-------ADWLEL---LAAL--GAVSIHLNYRG----------- 186 (229)
T ss_pred cCCEEEECCCHHHHHHHHHhCC--CCcEEEEecCCC-------cCHHHH---HHHc--CCeEEecChhh-----------
Confidence 4899999999999999988 567766332110 011111 1111 13333333222
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
...++|+.+|++|++|++||+|+. ++++++++.| ||||+||+|
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTVNDP------------ARAAELLEWG---VDAIFTDRP 229 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCC
Confidence 236799999999999999999875 8999999999 999999998
No 53
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=1.7e-39 Score=346.80 Aligned_cols=241 Identities=21% Similarity=0.200 Sum_probs=179.2
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~~------------------ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGAD--MLELDVQLTKDGQVVVFHDWDLDRLTGGSG------------------ 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEcCCcccceeCCce------------------
Confidence 689999999999999999999999999999 999999999999999999999999998775
Q ss_pred ccccccCHHhhccccccccccCC------CCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHh
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSR------TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~------~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~l 245 (811)
.+.++|++||++++++.++... ...+. +++||||+|+|+.+++..++||+|.+.. ..+++.+++++
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i 132 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG--DGRIPTLEEVFKAFPDTPINIDIKSPDA-----EELIAAVLDLL 132 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCC--CCcCCcHHHHHHhCCCCeEEEEECCCCH-----HHHHHHHHHHH
Confidence 7999999999999988754221 11223 3799999999999988889999997542 45778899999
Q ss_pred hhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHh-hh-H--HHHHhhcccccCCCc---
Q 003550 246 RSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL-KN-L--TFIKTFASGILVPKD--- 315 (811)
Q Consensus 246 k~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~-~~-L--~~i~~~a~gi~~~~~--- 315 (811)
+++++ .+++||+.+.|+++++..| +.++.+.+-..-. .|..+. .+ + ...+..+.++.+...
T Consensus 133 ~~~~~~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (264)
T cd08575 133 EKYKREDRTVWGSTNPEYLRALHPENP--NLFESFSMTRCLL-------LYLALGYTGLLPFVPIKESFFEIPRPVIVLE 203 (264)
T ss_pred HhccccceEEEEeCCHHHHHHHHHhCc--ccccccCchhHHH-------HHHHhheeccCCCCCCCceEEEeecccEEEE
Confidence 98876 4999999999999999887 4443321100000 000000 00 0 000000001111100
Q ss_pred -------ccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 316 -------YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 316 -------~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
.+.+ .|....+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|+.+
T Consensus 204 ~~~~~~~~~~~----~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~~~ 264 (264)
T cd08575 204 TFTLGEGASIV----AALLWWPNLFDHLRKRGIQVYLWVLNDE------------EDFEEAFDLG---ADGVMTDSPTKL 264 (264)
T ss_pred Eeccccccchh----hhhhcCHHHHHHHHhcCCcEEEEEECCH------------HHHHHHHhcC---CCEEEeCCcccC
Confidence 0001 1223457899999999999999999875 8999999999 999999999853
No 54
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5e-39 Score=337.37 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=176.2
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~g-------------------~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVD--AVEFDVHLTADGEVVVIHDPTLDRTTHGTG-------------------A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeEEEccCCCEEEECCChhhcccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998765 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++.++ | ++||||+|+|+++++ ..++||+|.+.. ......+++.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~~--------~--~~iptL~evl~~~~~~~~~l~iEiK~~~~-~~~~~~~~~~v~~~i~~~~~~ 128 (235)
T cd08565 60 VRDLTLAERKALRLRDSF--------G--EKIPTLEEVLALFAPSGLELHVEIKTDAD-GTPYPGAAALAAATLRRHGLL 128 (235)
T ss_pred eeeccHHHHhcCCCCCCC--------C--CCCCCHHHHHHHhhccCcEEEEEECCCCC-CCccHHHHHHHHHHHHhCCCc
Confidence 999999999999987532 3 699999999999964 579999996531 11123577889999998876
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHH-HhhcccccCCCcccccCCCcccCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i-~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+++++. | ..++.+++ +......... +. .+... ...+.++.++..+. .
T Consensus 129 ~~v~~~Sf~~~~l~~~~~~-p--~~~~~~l~-~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~---------~ 189 (235)
T cd08565 129 ERSVLTSFDPAVLTEVRKH-P--GVRTLGSV-DEDMLERLGG--EL----PFLTATALKAHIVAVEQSLL---------A 189 (235)
T ss_pred CCEEEEECCHHHHHHHHhC-C--CCcEEEEe-cccccccccc--cc----chhhhhhccCcEEccCcccc---------c
Confidence 49999999999999999 8 67777643 2111110000 00 00011 11233344433221 1
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
...++|+++|+ |++|++||||+. ++|+++++.| ||||+||+|+.+
T Consensus 190 ~~~~~v~~~~~-g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 190 ATWELVRAAVP-GLRLGVWTVNDD------------SLIRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred CCHHHHHHHhC-CCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCcccc
Confidence 23678999975 999999999864 8999999999 999999999865
No 55
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.5e-38 Score=331.77 Aligned_cols=225 Identities=19% Similarity=0.210 Sum_probs=180.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|++ ++|||||+||||++||+||.+++|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~--~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGAD--GIETDVRLTKDGELVCVHDPTLKRTSGGDG-------------------A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEecCCccccccCCCc-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC-c
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~-~ 250 (811)
+.++||+||++++++.++. ..|.+ ++||||+|+|+++++ ..++||+|.+ .....+...+++++++++ .
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~ieiK~~----~~~~~~~~~~~~~~~~~~~~ 130 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG--EKVPTLEEYLAIVPKYGKKLFIEIKHP----RRGPEAEEELLKLLKESGLL 130 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC--CcCCCHHHHHHHHHhcCceEEEEeCCC----ccCccHHHHHHHHHHHcCCC
Confidence 8999999999999876542 34444 799999999999976 6799999975 123457788999999884 2
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHH-hhcccccCCCcccccCCCcccC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYL 326 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~-~~a~gi~~~~~~i~~~~~~~~l 326 (811)
.+++||+...++.+++..| +.++.|+......... .. ...+ ..+.++.++...
T Consensus 131 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~~~~------~~-----~~~~~~~~~~i~~~~~~---------- 187 (233)
T cd08582 131 PEQIVIISFDAEALKRVRELAP--TLETLWLRNYKSPKED------PR-----PLAKSGGAAGLDLSYEK---------- 187 (233)
T ss_pred CCCEEEEecCHHHHHHHHHHCC--CCcEEEEeccCccccc------hh-----HHHHhhCceEEcccccc----------
Confidence 4999999999999999998 5777764432211000 00 0111 124555543321
Q ss_pred CCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 327 ~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
...+++|+.+|++|++|++||+|+. ++|+++++.| ||||+||+|.
T Consensus 188 ~~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---Vdgi~TD~p~ 232 (233)
T cd08582 188 KLNPAFIKALRDAGLKLNVWTVDDA------------EDAKRLIELG---VDSITTNRPG 232 (233)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCCC
Confidence 1247899999999999999999865 8999999999 9999999996
No 56
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=3.6e-38 Score=329.98 Aligned_cols=224 Identities=21% Similarity=0.275 Sum_probs=179.9
Q ss_pred CEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 92 plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
++||||||+++.+||||++||+.|++.|++ +||||||+||||++||+||.+++|+|++.+
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~--~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~~------------------ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGAD--GIELDVHLTKDGQLVVIHDETVDRTTNGKG------------------ 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCcccccCCCC------------------
Confidence 369999999999999999999999999999 999999999999999999999999998765
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~ 249 (811)
.+.++||+||++++++.++. ..+.+ ++||||+|+++++++ ..++||+|.+... ...+++.+++++++++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~leiK~~~~~---~~~~~~~l~~~l~~~~ 131 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFTG--EKIPTLEEVLDLLKDKDLLLNIEIKTDVIH---YPGIEKKVLELVKEYN 131 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCCC--CcCCCHHHHHHHHHhcCcEEEEEECCCCCc---ChhHHHHHHHHHHHcC
Confidence 79999999999999987543 23333 699999999999973 5799999976422 1357788999999987
Q ss_pred c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCCccc
Q 003550 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 250 ~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~~~~ 325 (811)
+ .+++||+.+.++.+++..| ..++.++.... ... ....++.. +.++.+...+
T Consensus 132 ~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~-~~~------------~~~~~~~~~~~~v~~~~~~--------- 187 (230)
T cd08563 132 LEDRVIFSSFNHESLKRLKKLDP--KIKLALLYETG-LQD------------PKDYAKKIGADSLHPDFKL--------- 187 (230)
T ss_pred CCCCEEEEcCCHHHHHHHHHHCC--CCcEEEEecCc-ccC------------HHHHHHHhCCEEEccCchh---------
Confidence 5 4999999999999999988 56776633211 100 01112211 2344433222
Q ss_pred CCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 326 l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
..+++++.+|++|++|++||||+. +++.+++++| ||||+||+|
T Consensus 188 --~~~~~i~~~~~~g~~v~~Wtvn~~------------~~~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 188 --LTEEVVEELKKRGIPVRLWTVNEE------------EDMKRLKDLG---VDGIITNYP 230 (230)
T ss_pred --cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEeCCCC
Confidence 246799999999999999999864 8999999999 999999998
No 57
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=2.6e-38 Score=330.26 Aligned_cols=220 Identities=17% Similarity=0.128 Sum_probs=171.0
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcc
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~ 172 (811)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~g------------------- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGAD--GVELDVWLTKDGKLVVLHDENLKRVGGVDL------------------- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcC--EEEEEEEEcCCCCEEEECCCcccccCCCCc-------------------
Confidence 48999999999999999999999999999 999999999999999999999999998775
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
.+.++|++||++++++ | ++||||+|+|+++++ ..++||||.+. ..+.+++++++++.
T Consensus 60 ~v~~~t~~eL~~l~~~-----------g--~~iPtL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~l~~~~~~ 118 (226)
T cd08568 60 KVKELTYKELKKLHPG-----------G--ELIPTLEEVFRALPNDAIINVEIKDID--------AVEPVLEIVEKFNAL 118 (226)
T ss_pred eeecCCHHHHhhCCCC-----------C--CcCCCHHHHHHhcCCCcEEEEEECCcc--------HHHHHHHHHHHcCCC
Confidence 7999999999999874 2 699999999999976 67999999642 35678888888874
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCCCcccCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.|+.+++..| ..++.++....... .... ...+. .+.++.++...+.-. . ..
T Consensus 119 ~~v~i~SF~~~~l~~~~~~~p--~~~~~~l~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~---~-~~ 181 (226)
T cd08568 119 DRVIFSSFNHDALRELRKLDP--DAKVGLLIGEEEEG-----FSIP------ELHEKLKLYSLHVPIDAIGYI---G-FE 181 (226)
T ss_pred CcEEEEECCHHHHHHHHHhCC--CCcEEEEeeccccc-----cCHH------HHHHhcCCcEeccchhhhccc---c-cc
Confidence 4999999999999999998 56777643221110 0000 11111 123334332222100 0 11
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
..+++|+.+|++|++|++||||+. ++++++.. + ||||+||+|+.
T Consensus 182 ~~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 182 KFVELLRLLRKLGLKIVLWTVNDP------------ELVPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred ccHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHh-h---CCEEEccCccc
Confidence 136799999999999999999864 78887764 6 99999999985
No 58
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.2e-38 Score=338.52 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=183.9
Q ss_pred CCCEEEEeCCCCCC--CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCC--------Ccchhhhhcccc
Q 003550 90 DPPFVVARGGFSGI--FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDN--------ASNIAQIFKTQQ 159 (811)
Q Consensus 90 ~~plviaHRG~~~~--~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~r--------tT~~~~~~~~~~ 159 (811)
.+|+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.++++ ++++.+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~~------ 73 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVD--GVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGFK------ 73 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCC--EEEEeeEECCCCCEEEEcCCccccCccccccccCCCcc------
Confidence 36899999999988 999999999999999999 999999999999999999987766 333322
Q ss_pred cccccCCCCCCcccccccCHHhhccccccccccCCC---CCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCc
Q 003550 160 KNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT---DKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNL 235 (811)
Q Consensus 160 ~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~---~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~ 235 (811)
.+.++|++||++++++.++.... ..+. +++||||+|+|+++++ .+++||||.+. .
T Consensus 74 -------------~v~~~t~~el~~l~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~iEiK~~~------~ 132 (265)
T cd08564 74 -------------NINDLSLDEITRLHFKQLFDEKPCGADEIK--GEKIPTLEDVLVTFKDKLKYNIELKGRE------V 132 (265)
T ss_pred -------------chhhCcHHHHhhcccCcccccCcccccccC--CccCCCHHHHHHHhccCcEEEEEeCCCc------h
Confidence 79999999999999987664321 1233 4799999999999976 67999999653 3
Q ss_pred hHHHHHHHHhhhcCc---eEEecCCH-HHHHHHHHhcCCC-CcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hccc
Q 003550 236 SMRSFVLSVSRSVVV---NYISSPEV-NFLRSIAARFRPS-MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASG 309 (811)
Q Consensus 236 ~~~~~l~~~lk~~~~---~~isSf~~-~~L~~l~~~~~~~-~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~g 309 (811)
.+++.+++++++++. .+|+||+. +.++.+++..|.. +.++.+++..... + .+.+. +...+. .+.+
T Consensus 133 ~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~---~~~~~~~~~~~ 203 (265)
T cd08564 133 GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS--P----SPLDF---LEQAKYYNATW 203 (265)
T ss_pred hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC--c----ccccH---HHHHHhcCCce
Confidence 567889999999986 59999999 9999999988720 1677764432210 0 01111 111121 2444
Q ss_pred ccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcc
Q 003550 310 ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389 (811)
Q Consensus 310 i~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~ 389 (811)
+.+.+.++ .+++|+.+|++|++|++||.+.- .|+.++|+++++.| ||||+||+|+.+.
T Consensus 204 v~~~~~~~-----------~~~~v~~~~~~Gl~v~~wT~~~~--------~n~~~~~~~l~~~G---vdgiiTD~p~~~~ 261 (265)
T cd08564 204 VNFSYDFW-----------TEEFVKKAHENGLKVMTYFDEPV--------NDNEEDYKVYLELG---VDCICPNDPVLLV 261 (265)
T ss_pred eeechhhh-----------hHHHHHHHHHcCCEEEEecCCCC--------CCCHHHHHHHHHcC---CCEEEcCCHHHHH
Confidence 54433332 25799999999999999993210 13358999999999 9999999999887
Q ss_pred hhh
Q 003550 390 AAV 392 (811)
Q Consensus 390 ~~~ 392 (811)
+++
T Consensus 262 ~~~ 264 (265)
T cd08564 262 NFL 264 (265)
T ss_pred Hhh
Confidence 664
No 59
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=2.2e-38 Score=329.37 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=175.5
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad--~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~~-------------------~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPD--YVEIDVQETKDGQFVVMHDANLKRLAGVNK-------------------K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcCCchhhccCCCC-------------------C
Confidence 6899999999999999999999999999 999999999999999999999999998775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcCc-
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~- 250 (811)
+.++|++||++++++++ +. .++||||+|+|+++++ ..++||||.+.. ....+.+.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~-------~~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~---~~~~~~~~v~~~l~~~~~~ 127 (220)
T cd08579 60 VWDLTLEELKKLTIGEN-------GH--GAKIPSLDEYLALAKGLKQKLLIELKPHGH---DSPDLVEKFVKLYKQNLIE 127 (220)
T ss_pred hhhCCHHHHhcCcCccC-------CC--CCcCCCHHHHHHHhhccCCeEEEEECCCCC---CCHHHHHHHHHHHHHcCCC
Confidence 89999999999998764 23 3699999999999975 679999997642 234577888999998875
Q ss_pred --eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCC
Q 003550 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (811)
Q Consensus 251 --~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~ 328 (811)
.+|+||+...++.+++..| ..++.++... .. +.+ . ...+..+.+++.. .
T Consensus 128 ~~v~v~Sf~~~~l~~~~~~~p--~~~~~~~~~~-~~---------~~~----~--~~~~~~~~~~~~~-----------~ 178 (220)
T cd08579 128 NQHQVHSLDYRVIEKVKKLDP--KIKTGYILPF-NI---------GNL----P--KTNVDFYSIEYST-----------L 178 (220)
T ss_pred cCeEEEeCCHHHHHHHHHHCC--CCeEEEEEec-cc---------Ccc----c--ccCceEEeeehhh-----------c
Confidence 4899999999999999888 5666663321 10 000 0 1123334333221 2
Q ss_pred ChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 329 ~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
..++|+.+|++|++|++||+|+. +++++++++| ||||+||+|
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDP------------DDMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEeCCCC
Confidence 36799999999999999999864 8999999999 999999998
No 60
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.1e-38 Score=339.19 Aligned_cols=257 Identities=17% Similarity=0.147 Sum_probs=184.4
Q ss_pred EEEEeCCCC--------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhccccccccc
Q 003550 93 FVVARGGFS--------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (811)
Q Consensus 93 lviaHRG~~--------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~ 164 (811)
|||||||++ +.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+.+
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad--~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGAD--MVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCcceeeccccccc---------
Confidence 589999997 79999999999999999999 99999999999999999999999999876531
Q ss_pred CCCCCCcccccccCHHhhccccccccccCCCCCC-------------CCCCcccccHHHHHHhhCC-CceEEeeccchhh
Q 003550 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKF-------------DGNGFQILTVQDMARQIKP-PGLWLNIQHDAFY 230 (811)
Q Consensus 165 ~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~-------------~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~ 230 (811)
++....+.++.++|++||+++++++++......+ .....+||||+|+|+++++ .+++||||.+...
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~ 149 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLL 149 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcc
Confidence 2222234589999999999999887542211110 0113699999999999975 6799999976533
Q ss_pred hhc---------CchHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCcc-CCCcccchHHHh
Q 003550 231 AQH---------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGSLL 297 (811)
Q Consensus 231 ~~~---------~~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~~~~~~~y~~l~ 297 (811)
.+. ...+++.+++++++++. .+++||++..|+.+++..| ..++++++...... +.. ......+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p--~~~~~~l~~~~~~~~~~~-~~~~~~~~ 226 (293)
T cd08572 150 EDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN--KYPVLFLTNGGTNEVEHM-DPRRRSLQ 226 (293)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc--cCCEEEEecCCCCccccc-chhhhhHH
Confidence 211 12577889999998876 4999999999999999988 67888754321110 000 00001111
Q ss_pred hhHHHHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCc
Q 003550 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFS 376 (811)
Q Consensus 298 ~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~ 376 (811)
..+.+.+. .+.++.+...+ +...+++|+++|++|+.|++||++|+ ..++|+++++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~wTv~~n----------~~~~~~~l~~~G--- 284 (293)
T cd08572 227 AAVNFALAEGLLGVVLHAED---------LLKNPSLISLVKALGLVLFTYGDDNN----------DPENVKKQKELG--- 284 (293)
T ss_pred HHHHHHHHCCCeEEEechHH---------hhcCcHHHHHHHHcCcEEEEECCCCC----------CHHHHHHHHHcC---
Confidence 11111111 12333333222 22236799999999999999999432 248999999999
Q ss_pred cCeEeccCC
Q 003550 377 VDGVLSDFP 385 (811)
Q Consensus 377 VDgIiTD~P 385 (811)
||||+||+|
T Consensus 285 VdgIiTD~~ 293 (293)
T cd08572 285 VDGVIYDRV 293 (293)
T ss_pred CCEEEecCC
Confidence 999999997
No 61
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=9.7e-38 Score=331.95 Aligned_cols=231 Identities=14% Similarity=0.127 Sum_probs=175.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~g-------------------~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGAD--GVEFDLEFTKDGVPVLMHDDTVDRTTDGTG-------------------L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECCCCcEEEECCCCcceecCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999775 7
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCchHHHHHHHHhhhcC-c
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~-~ 250 (811)
+.++||+||++++++.++. ....|.+ ++||||+|+|+++++ ..++||||.+. ..+++.+++++++++ .
T Consensus 60 v~~~t~~el~~l~~~~~~~-~~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~------~~~~~~v~~~l~~~~~~ 130 (258)
T cd08573 60 VAELTWEELRKLNAAAKHR-LSSRFPG--EKIPTLEEAVKECLENNLRMIFDVKSNS------SKLVDALKNLFKKYPGL 130 (258)
T ss_pred EecCcHHHHhhCCCCCCCC-CccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCc------HHHHHHHHHHHHHCCCc
Confidence 8999999999999886542 2344555 799999999999854 57999999754 156788899999888 4
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCC----cccc---hH----HHhhhH-----HHHH---hhcc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT----TNQT---YG----SLLKNL-----TFIK---TFAS 308 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~----~~~~---y~----~l~~~L-----~~i~---~~a~ 308 (811)
.+++||+...++++++..| ..++.+++ ........ .... +. .+...+ ..+. ..++
T Consensus 131 ~~~v~v~SF~~~~l~~~~~~~p--~~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T cd08573 131 YDKAIVCSFNPIVIYKVRKADP--KILTGLTW-RPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVS 207 (258)
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CceEEEec-CcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCee
Confidence 4999999999999999998 56666533 11100000 0000 11 111100 0000 0122
Q ss_pred cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHH-cCCCccCeEeccC
Q 003550 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDF 384 (811)
Q Consensus 309 gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~-~G~~~VDgIiTD~ 384 (811)
++.+.+. ....++|+.+|++|++|++||||+. ++++++++ +| || ||||+
T Consensus 208 ~v~~~~~-----------~~~~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 208 ALLIHKD-----------DISSAYVRYWRARGIRVIAWTVNTP------------TEKQYFAKTLN---VP-YITDS 257 (258)
T ss_pred EEEechH-----------hcCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHHhC---CC-eecCC
Confidence 2222222 2246799999999999999999865 89999999 99 99 99997
No 62
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=1.7e-37 Score=335.92 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=179.6
Q ss_pred EEEEeCCCC-------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccC
Q 003550 93 FVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVN 165 (811)
Q Consensus 93 lviaHRG~~-------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~ 165 (811)
+.|||||++ +.+||||+.||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+..+.
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad--~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~-------- 70 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGAD--MVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDR-------- 70 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCeeEeeccCccccCc--------
Confidence 479999984 89999999999999999999 9999999999999999999999999987642211
Q ss_pred CCCCCcccccccCHHhhccccccccccCCCCCCCC--------CCcccccHHHHHHhhCC-CceEEeeccchhhhhc---
Q 003550 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG--------NGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQH--- 233 (811)
Q Consensus 166 G~~~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~--------~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~--- 233 (811)
.+..++.+.|+|++||++++++.+..+....|.+ ..++||||+|+|++++. .+++||||.+......
T Consensus 71 -~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~ 149 (290)
T cd08607 71 -DDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWE 149 (290)
T ss_pred -cceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccc
Confidence 1122347999999999999987533222222321 13689999999999865 6799999975421110
Q ss_pred --------CchHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCc-cCCCcccchHHHhhhHH
Q 003550 234 --------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE-IEPTTNQTYGSLLKNLT 301 (811)
Q Consensus 234 --------~~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~-~~~~~~~~y~~l~~~L~ 301 (811)
...+++.+++.+++++. .+|+||++..|+.++.+.| ..++.++...... ..+........+.....
T Consensus 150 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (290)
T cd08607 150 SELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQN--KYPVLFLTQGKTQRYPEFMDLRTRTFEIAVN 227 (290)
T ss_pred cccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCc--CCCEEEEecCCCCccccccchHHHhHHHHHH
Confidence 01356778888887754 5999999999999999988 6777764422110 00000000000111111
Q ss_pred HHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEec--CCCCCcccCCCCChHHHHHHHHHcCCCccC
Q 003550 302 FIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (811)
Q Consensus 302 ~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv--~n~~~~~~~~~~D~~~e~~~~i~~G~~~VD 378 (811)
..+. .+.++.++.. ++...+++|+.+|++|++|++||+ |+ .++|++++++| ||
T Consensus 228 ~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~G---Vd 283 (290)
T cd08607 228 FAQAEELLGVNLHSE---------DLLKDPSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELG---VD 283 (290)
T ss_pred HHHHcCCceeEechh---------hhhcChHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcC---CC
Confidence 1111 1223333222 222346799999999999999999 43 38999999999 99
Q ss_pred eEeccCC
Q 003550 379 GVLSDFP 385 (811)
Q Consensus 379 gIiTD~P 385 (811)
|||||++
T Consensus 284 gIiTD~~ 290 (290)
T cd08607 284 GLIYDRI 290 (290)
T ss_pred EEEecCC
Confidence 9999985
No 63
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.3e-37 Score=329.57 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=180.3
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ +||||||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d--~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGAD--VLETDVHATKDGVLVVIHDETLDRTTDGTG-------------------P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeECCCCCEEEECCCccccccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999998875 7
Q ss_pred ccccCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~---~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
+.++|++||++++++.++..... .+....++||||+|+|+++++..++||+|.+. ..+++.+++++++++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~------~~~~~~~~~~l~~~~~ 133 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDG------PAAAAALADLIERYGA 133 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCc------hhHHHHHHHHHHHcCC
Confidence 89999999999998875421111 11222379999999999998888999999753 2477889999998875
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhh-hH-HHHHhhcccccCCCcccccCCCccc
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NL-TFIKTFASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~-~L-~~i~~~a~gi~~~~~~i~~~~~~~~ 325 (811)
.+++||+.+.++.+++..| ..++.+...+.. . +..... .+ ........++.++..+. ++
T Consensus 134 ~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 197 (249)
T cd08561 134 QDRVLVASFSDRVLRRFRRLCP--RVATSAGEGEVA-------A-FVLASRLGLGSLYSPPYDALQIPVRYG------GV 197 (249)
T ss_pred CCcEEEEECCHHHHHHHHHHCC--CcceeccHHHHH-------H-HHHHhhcccccccCCCCcEEEcCcccC------Ce
Confidence 4999999999999999988 455544110000 0 000000 00 00000112222221111 12
Q ss_pred CCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 326 l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
....+.+|+.+|++|++|++||||+. ++|.++++.| ||||+||+|+++.++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~------------~~~~~l~~~g---VdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDP------------AEMRRLLDLG---VDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEcCCHHHHHhh
Confidence 23347899999999999999999865 8999999999 999999999977654
No 64
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.5e-37 Score=329.73 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=178.9
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCC--CCC
Q 003550 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV--PTP 170 (811)
Q Consensus 93 lviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~--~~~ 170 (811)
.||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|.... +|. +..
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad--~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~ 68 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVD--TLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYE 68 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCccccc
Confidence 59999999999999999999999999999 999999999999999999999998652110 111 111
Q ss_pred cccccccCHHhhccccccccccCC--CCCCCC----CCcccccHHHHHHhhCC-----CceEEeeccchhhh---hcCch
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSR--TDKFDG----NGFQILTVQDMARQIKP-----PGLWLNIQHDAFYA---QHNLS 236 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~--~~~~~~----~~~~iptL~evl~~~~~-----~~l~leiK~~~~~~---~~~~~ 236 (811)
+..|.++||+||++++++.++... ...|.+ ..++||||+|+|+++++ ..++||+|.+.... .....
T Consensus 69 ~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 69 GPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred CcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 237999999999999988754211 122211 12699999999999975 57999999654221 11245
Q ss_pred HHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccC
Q 003550 237 MRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILV 312 (811)
Q Consensus 237 ~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~ 312 (811)
+++.+++++++++. .+++||+.+.++.++++.| +.++.+++..... ..+.. .++. -+..+.+
T Consensus 149 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~------~~~~~------~~~~~~~~~~~~ 214 (263)
T cd08567 149 FVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAP--DIPTVALTEETTL------GNLPR------AAKKLGADIWSP 214 (263)
T ss_pred HHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCC--CccEEEEecCCcc------cCHHH------HHHHhCCcEEec
Confidence 77899999998876 4999999999999999988 6777764432110 01111 1111 1222222
Q ss_pred CCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 313 ~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
. +....+++++.+|++|+.|++||+|+. ++|.++++.| ||||+||+|+.
T Consensus 215 ~-----------~~~~~~~~i~~~~~~G~~v~vwtvn~~------------~~~~~~~~~G---vdgi~TD~P~~ 263 (263)
T cd08567 215 Y-----------FTLVTKELVDEAHALGLKVVPWTVNDP------------EDMARLIDLG---VDGIITDYPDL 263 (263)
T ss_pred c-----------hhhcCHHHHHHHHHCCCEEEEecCCCH------------HHHHHHHHcC---CCEEEcCCCCC
Confidence 1 112346799999999999999999753 7899999999 99999999974
No 65
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2e-37 Score=325.41 Aligned_cols=224 Identities=17% Similarity=0.082 Sum_probs=172.3
Q ss_pred ceeecCCCCCCC---CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCc
Q 003550 408 LLVISKNGASGD---YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (811)
Q Consensus 408 plIIAHRGasg~---~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~ 484 (811)
+.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|+ +.
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~------------------~~ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG------------------VE 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC------------------CC
Confidence 458999999874 79999999999999999 799999999999999999999999998 55
Q ss_pred cccccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHH
Q 003550 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (811)
Q Consensus 485 G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~ 564 (811)
| .|.++||+||++|+.+.. .++||||+|+|+++++. .+++||+|.+... ...+++.
T Consensus 65 ~-~v~~~t~~eL~~l~~~~~----------------~~~iPtL~evl~~~~~~---~~l~iEiK~~~~~----~~~l~~~ 120 (237)
T cd08585 65 G-RVEELTAAELRALRLLGT----------------DEHIPTLDEVLELVAGR---VPLLIELKSCGGG----DGGLERR 120 (237)
T ss_pred C-ccccCCHHHHhcCCCCCC----------------CCCCCCHHHHHHHhccC---ceEEEEEccCCcc----chHHHHH
Confidence 5 799999999999987621 26899999999999864 5899999975431 2347888
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHH--HHHHh--hhhhccccceeecC
Q 003550 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIE--DIKKF--ADSVVLSKESVYPL 639 (811)
Q Consensus 565 v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~--~i~~~--a~~v~~~~~~i~p~ 639 (811)
+++++++++ .+|+|+|||+.+|+++++. |++++++++.....+....... ..+.. ....++ ..+.+.
T Consensus 121 v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (237)
T cd08585 121 VLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRP--DFIAYH 192 (237)
T ss_pred HHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCC--CEEEeC
Confidence 999998753 4899999999999999999 9999999986432111110000 00000 001122 222221
Q ss_pred CccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 640 NSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 640 ~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
.. ..+.++|+++|++ |+.|++||||++. ++.+++ ++|+++||-
T Consensus 193 ~~---~~~~~~v~~~~~~~G~~v~vWTVnd~~-------------~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 193 LD---DLPNPFVTLARALLGMPVIVWTVRTEE-------------DIARLK-QYADNIIFE 236 (237)
T ss_pred hh---hCcCHHHHHHHHhcCCcEEEEeCCCHH-------------HHHHHH-HhCCeeEeC
Confidence 11 2346899999999 9999999999884 688887 899999973
No 66
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=2.4e-37 Score=324.71 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=170.0
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchh-hhhcccccccccCCCCCCcc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIA-QIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~-~~~~~~~~~y~~~G~~~~g~ 172 (811)
||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+++|+|++. +
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d--~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~~~------------------- 59 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGAD--AIETDVHLTKDGVVVISHDPNLKRCFGKDGL------------------- 59 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCcEEEeCCCccceeeCCCCC-------------------
Confidence 6899999999999999999999999999 99999999999999999999999999876 3
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-----CCceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~-----~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||+++++++ .+ .++||||+|++++++ +..++||+|.... ...++..+.+++++
T Consensus 60 ~v~~~t~~eL~~l~~~~---------~~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~----~~~~~~~v~~~i~~ 125 (234)
T cd08570 60 IIDDSTWDELSHLRTIE---------EP-HQPMPTLKDVLEWLVEHELPDVKLMLDIKRDND----PEILFKLIAEMLAV 125 (234)
T ss_pred EeccCCHHHHhhccccc---------CC-CccCCcHHHHHHHHHhcCCCCeEEEEEECCCCC----HHHHHHHHHHHHHh
Confidence 79999999999998763 12 368999999999985 3568999996431 13466777788887
Q ss_pred cC-------ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhh---cccccCCCccc
Q 003550 248 VV-------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF---ASGILVPKDYI 317 (811)
Q Consensus 248 ~~-------~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~---a~gi~~~~~~i 317 (811)
++ -.+|+||+...++.+++..| +.+++++..... .. ..+..+ +.++.+....+
T Consensus 126 ~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p--~~~~~~l~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~ 188 (234)
T cd08570 126 KPDLDFWRERIILGLWHLDFLKYGKEVLP--GFPVFHIGFSLD-----------YA----RHFLNYSEKLVGISMHFVSL 188 (234)
T ss_pred cCCcccccCCEEEEeCCHHHHHHHHHhCC--CCCeEEEEcCHH-----------HH----HHHhccccccceEEeeeehh
Confidence 64 24899999999999999988 566665322110 00 001111 22333222111
Q ss_pred ccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 318 ~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
+. . ...++|+.+|++|++|++||||++ ++|++++++| ||||+||+|
T Consensus 189 ~~-----~--~~~~~v~~~~~~gl~v~~wTvn~~------------~~~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 189 WG-----P--FGQAFLPELKKNGKKVFVWTVNTE------------EDMRYAIRLG---VDGVITDDP 234 (234)
T ss_pred hc-----c--cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEeCCC
Confidence 10 0 247899999999999999999865 8999999999 999999998
No 67
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=3.8e-37 Score=327.35 Aligned_cols=247 Identities=26% Similarity=0.337 Sum_probs=198.2
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~ 486 (811)
.++||||||+++.+||||++||++|++.|+|+||+|||+||||++|++||.+++|+|+ +.|
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~------------------~~~- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN------------------GLG- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc------------------Ccc-
Confidence 5799999999999999999999999999999999999999999999999999999998 566
Q ss_pred cccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHH
Q 003550 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (811)
Q Consensus 487 ~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~ 566 (811)
.+.++||+|+++++.+.+. .+.+ .+.+|||+|+++.. +. ..+++||+|.+.......+ ++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~---------~~~~--~~~ip~l~~~l~~~-~~--~~~l~ieiK~~~~~~~~~~--~~~~~~ 129 (257)
T COG0584 66 TVRDLTLAELKRLDAGSFR---------IPTF--GEEIPTLEELLEAT-GR--KIGLYIEIKSPGFHPQEGK--ILAALL 129 (257)
T ss_pred ccccCChhhhcCcccCccc---------CCCC--CCccCCHHHHHHHh-cc--cCCeEEEecCCCcccchhh--hHHHHH
Confidence 6789999999999955432 2334 37999999999999 42 2699999998775532111 456666
Q ss_pred HHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccc---cchhchHhHHHHHHhhhhhccccceeecCCcc
Q 003550 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN---IRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (811)
Q Consensus 567 ~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~---~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~ 642 (811)
+.+.+..... ..+++++|||+...+..+++. |.++++++++.. .....+..+..+..++..+++....+.+.
T Consensus 130 ~~~~~~~~~~-~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 205 (257)
T COG0584 130 ALLKRYGGTA-ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAEL--- 205 (257)
T ss_pred HHHHHhcccC-CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceeccc---
Confidence 7776654411 126999999999999999999 999999999875 12234455667777887777754433221
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHH
Q 003550 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRR 710 (811)
Q Consensus 643 ~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~ 710 (811)
.+.++..+|..|+.|++||++++. .+..+. ++|||||+||+|+.+.+.+.
T Consensus 206 ----~~~~v~~~~~~gl~v~~~tv~~~~-------------~~~~~~-~~gvd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 ----LTELVDDAHAAGLKVHVWTVNEED-------------DIRLLL-EAGVDGLITDFPDLAVAFLN 255 (257)
T ss_pred ----ccHHHHHHHhCCCeEEEEecCcHH-------------HHHHHH-HcCCCEEEcCCHHHHHHhhc
Confidence 357999999999999999999884 245554 99999999999999988764
No 68
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=5.4e-37 Score=322.62 Aligned_cols=231 Identities=13% Similarity=0.140 Sum_probs=170.5
Q ss_pred eecCCCC--CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccc
Q 003550 410 VISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (811)
Q Consensus 410 IIAHRGa--sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~ 487 (811)
+|||||+ ++.+||||++||++|++.|+|+||||||+||||++||+||.+++|+.+... ..++ .
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~--------------~~~~-~ 65 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL--------------PTSK-N 65 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC--------------cccc-c
Confidence 4899996 789999999999999999999999999999999999999999987532000 0133 6
Q ss_pred ccCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHH
Q 003550 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (811)
Q Consensus 488 v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~ 567 (811)
+.++|++|+++++.. . .+++|||+|+|+++++.+ .+.++||||.... .. -..++..+++
T Consensus 66 i~~~t~~el~~~~~~----------------~-~~~iptL~evl~~~~~~~-~~~l~iEiK~~~~-~~--~~~~~~~l~~ 124 (237)
T cd08583 66 TKPLSYEEFKSKKIY----------------G-KYTPMDFKDVIDLLKKYP-DVYIVTDTKQDDD-ND--IKKLYEYIVK 124 (237)
T ss_pred ccCCCHHHHhhcccc----------------C-CCCCCCHHHHHHHHHhCC-CeEEEEEecCCCc-cc--HHHHHHHHHH
Confidence 889999999886542 1 268999999999998642 2579999996532 10 0125668888
Q ss_pred HHHhc--CCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 568 ALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 568 ~L~~~--g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
.++++ ++. +||+|+|||+.+|..+++. |.....++..... ......+..++..++. ..+.+...
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~--- 191 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQD----SIRLDEIIAFCYENGI--KAVTISKN--- 191 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEecccc----ccchHHHHHHHHHcCC--cEEEechh---
Confidence 88886 355 6999999999999999998 8766655542210 0011222222222222 12222211
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
...+.+|+++|++|+.|++||+|++. ++..++ ++||||||||+|.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~-------------~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK-------------DAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCCC
Confidence 23578999999999999999999884 578887 9999999999984
No 69
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=4.6e-37 Score=331.93 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=180.0
Q ss_pred CEEEEeCCCCCCCC--------chHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccc
Q 003550 92 PFVVARGGFSGIFP--------DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (811)
Q Consensus 92 plviaHRG~~~~~P--------ENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~ 163 (811)
++||||||+++.+| |||++||+.|++.|+| +||+|||+||||++||+||.+++|+ ++.+
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d--~vE~DV~lTkDg~~VV~HD~~l~rt-~~~~---------- 68 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGAS--YVEVDVQLTKDLVPVIYHDFLVSET-GTDV---------- 68 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCC--EEEEEEEEccCCEEEEeCCCeeccC-CCCC----------
Confidence 57999999999999 9999999999999999 9999999999999999999999984 4433
Q ss_pred cCCCCCCcccccccCHHhhcccccc---ccccCCCCCCC----CC--CcccccHHHHHHhhCC-CceEEeeccchhhhhc
Q 003550 164 VNGVPTPGWFSIDYTLNDLSNIILN---QGVYSRTDKFD----GN--GFQILTVQDMARQIKP-PGLWLNIQHDAFYAQH 233 (811)
Q Consensus 164 ~~G~~~~g~~v~d~t~~eL~~l~~~---~~~~~~~~~~~----~~--~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~ 233 (811)
.+.|+|++||++++.. .++ .+..|. |. ..+||||+|+|+.+++ .+++||||.+..+...
T Consensus 69 ---------~v~~lt~~eL~~ld~~~~~~~~--~~~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~ 137 (286)
T cd08606 69 ---------PIHDLTLEQFLHLSRMKYTVDF--KKKGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAE 137 (286)
T ss_pred ---------ccccCCHHHHHhhhcccccccc--cccCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhh
Confidence 6899999999998743 222 122333 21 1469999999999965 6799999975422111
Q ss_pred C----------chHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhH
Q 003550 234 N----------LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300 (811)
Q Consensus 234 ~----------~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L 300 (811)
. ..+++.+++++++++. .+++||+++.|+.++.+.| ..++.+++..... +........+....
T Consensus 138 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p--~~~~~~l~~~~~~--~~~~~~~~~~~~~~ 213 (286)
T cd08606 138 EEEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQP--GYPVLFLTEAGKA--PDMDVRAASLQEAI 213 (286)
T ss_pred hcccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc--CCCEEEEeCCCCC--ccCCchhhcHHHHH
Confidence 0 1456788999998875 4999999999999999988 6777764321110 00000000010011
Q ss_pred HHHHhh-cccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCe
Q 003550 301 TFIKTF-ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (811)
Q Consensus 301 ~~i~~~-a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDg 379 (811)
...+.. +.|+.++.. ++...+++|+.+|++|++|++|||.++ ..++|++++++| |||
T Consensus 214 ~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~WTv~~n----------~~~~~~~l~~~G---Vdg 271 (286)
T cd08606 214 RFAKQWNLLGLVSAAE---------PLVMCPRLIQVVKRSGLVCVSYGVLNN----------DPENAKTQVKAG---VDA 271 (286)
T ss_pred HHHHHCCCeEEEechH---------HhhhChHHHHHHHHCCcEEEEECCccC----------CHHHHHHHHHcC---CCE
Confidence 111111 223322221 122246799999999999999999321 138999999999 999
Q ss_pred EeccCCCCcchhhh
Q 003550 380 VLSDFPLTPSAAVD 393 (811)
Q Consensus 380 IiTD~P~~a~~~~~ 393 (811)
||||+|+.+.++++
T Consensus 272 IiTD~p~~~~~~~~ 285 (286)
T cd08606 272 VIVDSVLAIRRGLT 285 (286)
T ss_pred EEECCHHHHHHHhc
Confidence 99999998877653
No 70
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=7.1e-37 Score=322.14 Aligned_cols=231 Identities=19% Similarity=0.134 Sum_probs=173.5
Q ss_pred EEEEeCCCCCC-CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCc
Q 003550 93 FVVARGGFSGI-FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (811)
Q Consensus 93 lviaHRG~~~~-~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g 171 (811)
+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.+
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~~------------------ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGAD--IVEIDVRRTKDGVLVLMHDDTLDRTTNGKG------------------ 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCCccccCCCC------------------
Confidence 48999999999 999999999999999999 999999999999999999999999998765
Q ss_pred ccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc
Q 003550 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (811)
Q Consensus 172 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~ 250 (811)
.+.++|++||++++++.++ ..|.+ ++||||+|+|+++++ ..++||+|.. ....+++++++++.
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iEiK~~---------~~~~~~~~~~~~~~ 124 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD--EKVPTLEEALAWAKGKILLNLDLKDA---------DLDEVIALVKKHGA 124 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC--CCCCCHHHHHHhhhcCcEEEEEECch---------HHHHHHHHHHHcCC
Confidence 7999999999999998754 34555 799999999999876 5799999964 24668888888876
Q ss_pred ---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCC
Q 003550 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (811)
Q Consensus 251 ---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~ 327 (811)
.+++||+.+.++.+++..| ..++.+++-.... . ..........+.+ ..+.+. +..
T Consensus 125 ~~~v~~~sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-----~---------~~~~~~~~~~~~~--~~~~~~----~~~ 182 (240)
T cd08566 125 LDQVIFKSYSEEQAKELRALAP--EVMLMPIVRDAED-----L---------DEEEARAIDALNL--LAFEIT----FDD 182 (240)
T ss_pred cccEEEEECCHHHHHHHHHhCC--CCEEEEEEccCcc-----h---------hHHHHhcccccce--EEEEEe----ccc
Confidence 4899999999999999988 5666653321110 0 0000011111110 001110 111
Q ss_pred -CChHHHHHHHHc-CCeEEEEecCCCCCc--ccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 328 -PHTTIVLDAHKE-RLEVFASNFANDIPI--SFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 328 -~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~--~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
.....+.++|+. |++|++||+|.+... ...+. |+..+|++++++| ||||+||+|
T Consensus 183 ~~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~-~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 183 LDLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALS-DPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred cccHHHHHHHHHhCCCEEEEECCCcccccchhhhhh-CchhHHHHHHHcC---CCEEecCCC
Confidence 125688888888 999999999863110 00111 2358999999999 999999998
No 71
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=2.6e-36 Score=317.47 Aligned_cols=248 Identities=24% Similarity=0.336 Sum_probs=159.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCC
Q 003550 413 KNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492 (811)
Q Consensus 413 HRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT 492 (811)
|||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|+ +.| .+.++|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~------------------~~~-~i~~~t 61 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG------------------GDG-PISDLT 61 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS------------------TES-BGGGS-
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC------------------CCc-eeccCC
Confidence 9999999999999999999999999999999999999999999999999999 444 799999
Q ss_pred HHHHhccC-ccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHh
Q 003550 493 WDEIQTLI-PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGN 571 (811)
Q Consensus 493 ~~ELk~L~-~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~ 571 (811)
|+||++++ ++.+... ..+...+.+.++||||+|+|+++.... ..+.|++|............++..+.+.+..
T Consensus 62 ~~el~~l~~~~~~~~~----~~~~~~~~~~~~i~tl~e~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T PF03009_consen 62 YAELKKLRTLGSKNSP----PFRGQRIPGKQKIPTLEEVLELCAKVK--LNLEIKIKSKDEIKDPEFLKIVKDIVESVSD 135 (256)
T ss_dssp HHHHTTSBESSTTTTC----GGTTTTSCTCB--EBHHHHHHHHHTTT--SEEEEEEEECTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccccCCcc----cccccceecccccCcHHHHHHhhhhcc--ceeEEEEeecccccchhhccccccccccccc
Confidence 99999999 4322100 112233333367999999999955441 4566666633211100000233344444444
Q ss_pred cC------CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCcccc
Q 003550 572 AG------YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (811)
Q Consensus 572 ~g------~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l 644 (811)
.. .. .+|+++||++.+|..+++. |.+++++++.................++..... ........ ..
T Consensus 136 ~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 208 (256)
T PF03009_consen 136 ILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKFVKCPGF--LASVWNYA-DR 208 (256)
T ss_dssp CHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHHHTTTEE--EEEHGGGG-HH
T ss_pred cccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHhhccccc--cccccccc-cc
Confidence 33 23 5999999999999999999 999999998753211110000011122221111 00011000 01
Q ss_pred CCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 645 ~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
...+++|+.+|++|+.|++||+|++. .+++..++ ++||||||||+|++
T Consensus 209 ~~~~~~v~~~~~~g~~v~~wtvn~~~-----------~~~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 209 LGNPRLVQEAHKAGLKVYVWTVNDPD-----------VEDMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp CEBHHHHHHHHHTT-EEEEBSB-SHS-----------HHHHHHHH-HHT-SEEEES-HHH
T ss_pred cccHHHHHHHHHCCCEEEEEecCCcH-----------HHHHHHHH-hCCCCEEEEcCCCC
Confidence 11467999999999999999999882 12466676 99999999999986
No 72
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=4.7e-36 Score=323.42 Aligned_cols=245 Identities=16% Similarity=0.094 Sum_probs=172.8
Q ss_pred EEEeCCCCC-----------CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhccccccc
Q 003550 94 VVARGGFSG-----------IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (811)
Q Consensus 94 viaHRG~~~-----------~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y 162 (811)
||||||+.. .+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad--~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~--------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGAD--FVEFDVQVTRDGVPVIWHDDFIVVERGGEV--------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCC--EEEEEEEECcCCeEEEECCCceecccCCCc---------
Confidence 899999764 3469999999999999999 999999999999999999999999998521
Q ss_pred ccCCCCCCcccccccCHHhhccccccccccCC----------CC----CCCCCCcccccHHHHHHhhCC-CceEEeeccc
Q 003550 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR----------TD----KFDGNGFQILTVQDMARQIKP-PGLWLNIQHD 227 (811)
Q Consensus 163 ~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~----------~~----~~~~~~~~iptL~evl~~~~~-~~l~leiK~~ 227 (811)
.+| .+.|+|++||++++++.++... .. .+...+++||||+|+|+.++. .+++||||.+
T Consensus 71 -~~~------~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~ 143 (282)
T cd08605 71 -ESS------RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFG 143 (282)
T ss_pred -Ccc------chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecC
Confidence 012 7999999999999987643110 00 011113799999999999865 5799999975
Q ss_pred hhhhhcC---chHHHHHHHHhhhcCc---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCC-ccCCCcccchHHHhhhH
Q 003550 228 AFYAQHN---LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKS-EIEPTTNQTYGSLLKNL 300 (811)
Q Consensus 228 ~~~~~~~---~~~~~~l~~~lk~~~~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~-~~~~~~~~~y~~l~~~L 300 (811)
....... ..+.+.+++++++++. .+|+||+++.|+.++++.| ..++.+++.... .........+.. ..
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~---~~ 218 (282)
T cd08605 144 DDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQS--LYPVMFLTDCGPYTHNDPRRNSIEA---AI 218 (282)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCc--cCCEEEEecCCCccccCchhhhHHH---HH
Confidence 4211000 1234668888888765 4999999999999999988 678877442110 000000000000 11
Q ss_pred HHHHh-hcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEec--CCCCCcccCCCCChHHHHHHHHHcCCCcc
Q 003550 301 TFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSV 377 (811)
Q Consensus 301 ~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv--~n~~~~~~~~~~D~~~e~~~~i~~G~~~V 377 (811)
...+. .+.++.++... +...+++|+.||++|++|++||+ |+ .++|++++++| |
T Consensus 219 ~~~~~~~~~~~~~~~~~---------l~~~~~~v~~~~~~Gl~v~vWTv~~n~------------~~~~~~l~~~G---V 274 (282)
T cd08605 219 QVALEGGLQGIVSEVKV---------LLRNPTAVSLVKASGLELGTYGKLNND------------AEAVERQADLG---V 274 (282)
T ss_pred HHHHHcCCceEEecHHH---------hhcCcHHHHHHHHcCcEEEEeCCCCCC------------HHHHHHHHHcC---C
Confidence 11111 23344433222 11236799999999999999998 54 38999999999 9
Q ss_pred CeEeccCC
Q 003550 378 DGVLSDFP 385 (811)
Q Consensus 378 DgIiTD~P 385 (811)
||||||++
T Consensus 275 dgIiTD~~ 282 (282)
T cd08605 275 DGVIVDHV 282 (282)
T ss_pred CEEEeCCC
Confidence 99999986
No 73
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.3e-37 Score=341.31 Aligned_cols=335 Identities=39% Similarity=0.559 Sum_probs=285.1
Q ss_pred HHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccceeecC
Q 003550 334 LDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISK 413 (811)
Q Consensus 334 ~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~plIIAH 413 (811)
..+|..|+++++|.+.++...+|+|++++..++..++.++.++++++..|+|.+....+.|+.+.+ ...||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 74 (341)
T KOG2258|consen 2 DDAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIG-------GWLIIAH 74 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCC-------CceeEec
Confidence 578999999999999999999999999999999999999999999999999999999999998864 7899999
Q ss_pred CCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCH
Q 003550 414 NGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493 (811)
Q Consensus 414 RGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~ 493 (811)
||++|.+||||++||++|++.|||.||||||+||||++|++||.+..|++++.. .++++||
T Consensus 75 rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~-------------------~~~~lt~ 135 (341)
T KOG2258|consen 75 RGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE-------------------IVFDLTW 135 (341)
T ss_pred cCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------eeccCCH
Confidence 999999999999999999999999999999999999999999999999988543 3899999
Q ss_pred HHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcC
Q 003550 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG 573 (811)
Q Consensus 494 ~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g 573 (811)
.|++++.+...+++. .+. -..+++++|+|....+-+. +..+..+.. ..+.+.+++.+++.+
T Consensus 136 ~e~~~l~~~~~~~~~------~~~-~~~~~~~~l~e~v~~~~~~-----------n~~~l~d~~-~~~~~~vl~~l~~~~ 196 (341)
T KOG2258|consen 136 MELRKLGPKIENPFA------GPI-ITLEKLLTLAEAVASVVGN-----------NVAMLNDVK-LLVVDKVLEALKNAT 196 (341)
T ss_pred HHHhccCccccCccc------ccc-cchhhhccHHHHHHHHHcC-----------Chhhhhhhh-hhhHHHHHHHHHHHh
Confidence 999999999876541 111 1125778888777777664 122222212 357888999999988
Q ss_pred CCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH-HHH
Q 003550 574 YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT-DIV 651 (811)
Q Consensus 574 ~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~-~~V 651 (811)
+.....++|++|||++.+|.++++. |. ++++..++.......+++++++..+..++..++|.......... +++
T Consensus 197 ~~~~~~~kv~v~s~~~~~l~~~~~~~~~----~~i~~~~~~~~ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 272 (341)
T KOG2258|consen 197 SDFSLYDKVLVQSFNPIVLYRLKKLDPF----ILIGDTWRFTFLSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVV 272 (341)
T ss_pred cCCCccceEEEEecCcHHHHHhccCCce----EEecceecchhhccchhhhcccceeeechHHHHHHHHHHhhhhhccee
Confidence 7766568999999999999999998 66 55555555544455678899999999988888887655555555 799
Q ss_pred HHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHHhcccCCCC
Q 003550 652 QRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGD 718 (811)
Q Consensus 652 ~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~~~~~~~~~ 718 (811)
..+++.++.|+++.++++ ..+++||+.|+..++..+..+.|++|.+||++.++.++.++.|...-.
T Consensus 273 ~~~~~~~~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (341)
T KOG2258|consen 273 APLQKLNLVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDNPCEGLFG 338 (341)
T ss_pred eehhcCCcEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhccccccccc
Confidence 999999999999999999 889999999999999999989999999999999999999999987644
No 74
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.1e-35 Score=317.86 Aligned_cols=242 Identities=15% Similarity=0.143 Sum_probs=179.5
Q ss_pred cccccceeecCCCCCCCC----------------------CCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 403 SKSANLLVISKNGASGDY----------------------PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 403 ~~~~~plIIAHRGasg~~----------------------PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
...++|+||||||+++.| ||||++||++|++.|+|+||||||+||||++||+||.+|+
T Consensus 19 ~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~ 98 (309)
T cd08613 19 PPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLD 98 (309)
T ss_pred CCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCccc
Confidence 455689999999997754 9999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCccccccccccCccccccCCCHHHHhccCccccCCcccccccCCcCCCC--CCCCCCHHHHHHHHHhcC
Q 003550 461 NSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN--AGKFMKLSDFLEMAKNAN 538 (811)
Q Consensus 461 rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~--~~~ipTL~E~L~~~k~~~ 538 (811)
|+|+ ++| .+.|+||+||++|+.+.+.+.. .+ ....+++ .++||||+|+|+++++.
T Consensus 99 R~T~------------------g~g-~V~dlTlaEL~~Ld~g~~~~~~-~g--~~~p~~~~~~~~IPTL~EvL~~~~~~- 155 (309)
T cd08613 99 CRTD------------------GSG-VTRDHTMAELKTLDIGYGYTAD-GG--KTFPFRGKGVGMMPTLDEVFAAFPDR- 155 (309)
T ss_pred cccC------------------CCC-chhhCCHHHHhhCCcCcccccc-cc--cccccccCCCCCCcCHHHHHHhcCCC-
Confidence 9998 667 7999999999999998653210 00 0011222 24799999999999763
Q ss_pred CCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCC--hHHHHHHHhc-cCceEEEEEccccchhc
Q 003550 539 SLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYELVYKVKENIRDAL 615 (811)
Q Consensus 539 ~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd--~~~L~~lk~~-p~~~~~~l~~~~~~d~~ 615 (811)
.++||||.+.. ...+.+.+++++++.. ++.+.||+ +..|++++++ |++++.-.-.
T Consensus 156 ---~l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~------- 213 (309)
T cd08613 156 ---RFLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKAS------- 213 (309)
T ss_pred ---cEEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccc-------
Confidence 79999997542 1356888999988874 66667776 7789999999 9887651110
Q ss_pred hHhHHHHHHhh----hhhcccc----ceeecCCc-cccCC-CHHHHHHHHHcCCcEEEE----------ecCCccccccc
Q 003550 616 NQTIEDIKKFA----DSVVLSK----ESVYPLNS-AFITS-ATDIVQRLQSFKLPVYVE----------TFSNEFVSQAW 675 (811)
Q Consensus 616 ~~~l~~i~~~a----~~v~~~~----~~i~p~~~-~~l~~-~~~~V~~~~~~Gl~V~vw----------tvnne~~~~~~ 675 (811)
.......|+ .+..+.. ...+|... .++.. +..+++++|++|.+|++| |+|++
T Consensus 214 --~~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~------ 285 (309)
T cd08613 214 --MKDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTP------ 285 (309)
T ss_pred --hHHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCH------
Confidence 011111221 1111111 11234332 23445 788999999999999999 56655
Q ss_pred ccCCChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 676 DFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 676 d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
+++.+++ +.|+|||+||+|+.+
T Consensus 286 -------~~~~~l~-~~~~~gi~T~r~~~l 307 (309)
T cd08613 286 -------EDLKRLP-EGFTGYIWTNKIEAL 307 (309)
T ss_pred -------HHHHHHH-hhCCCeEEeCCHhhc
Confidence 4799998 999999999999875
No 75
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.9e-35 Score=316.08 Aligned_cols=259 Identities=13% Similarity=0.127 Sum_probs=183.2
Q ss_pred CCcccccCCCCCEEEEeCCCCCCC----------------------CchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEE
Q 003550 81 TSRWQTLTGDPPFVVARGGFSGIF----------------------PDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGI 138 (811)
Q Consensus 81 ~~~~~~l~~~~plviaHRG~~~~~----------------------PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v 138 (811)
++.+.....+.|+||||||+++.| ||||++||+.|++.|+| +||||||+||||++|
T Consensus 13 ~~~~~~~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lV 90 (309)
T cd08613 13 TSLLAPPPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGAD--VVELDVHPTKDGEFA 90 (309)
T ss_pred hhhhccCCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCeEE
Confidence 445555667889999999997654 99999999999999999 999999999999999
Q ss_pred EecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccccccccCC---CCCCCCC-CcccccHHHHHHh
Q 003550 139 CFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR---TDKFDGN-GFQILTVQDMARQ 214 (811)
Q Consensus 139 ~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~~~~---~~~~~~~-~~~iptL~evl~~ 214 (811)
|+||.+|+|+|++.+ .+.|+|++||+++++++++... ...|.+. ..+||||+|+|++
T Consensus 91 V~HD~tL~R~T~g~g-------------------~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~ 151 (309)
T cd08613 91 VFHDWTLDCRTDGSG-------------------VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAA 151 (309)
T ss_pred EEecCccccccCCCC-------------------chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHh
Confidence 999999999998876 7999999999999998765321 1123331 2479999999999
Q ss_pred hCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCce--EEecCC--HHHHHHHHHhcCCCCcceeeeecCCCccCCCcc
Q 003550 215 IKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN--YISSPE--VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290 (811)
Q Consensus 215 ~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~--~isSf~--~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~ 290 (811)
++..+++||||.+. ....+.+.+++++++.. .+.||+ ...+++++++.| +.++.- ...
T Consensus 152 ~~~~~l~IEiK~~~------~~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~P--~~~~~s----~~~------ 213 (309)
T cd08613 152 FPDRRFLINFKSDD------AAEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELTP--DLRTLS----KAS------ 213 (309)
T ss_pred cCCCcEEEEeCCCC------ccHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHCC--CCceec----ccc------
Confidence 98888999999753 12346788888887753 445666 777999999987 343331 100
Q ss_pred cchHHHhhh-HHHHHhhcccccCCC----cccccCCCcccCCC-ChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHH
Q 003550 291 QTYGSLLKN-LTFIKTFASGILVPK----DYIWPVDESLYLLP-HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLT 364 (811)
Q Consensus 291 ~~y~~l~~~-L~~i~~~a~gi~~~~----~~i~~~~~~~~l~~-~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~ 364 (811)
+... +..+...-+|..+.. ....|.+....+-. +..+++.||++|.+|++|.-.. ..-+....|..+
T Consensus 214 -----~~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~--~~~~~~~~d~~~ 286 (309)
T cd08613 214 -----MKDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYT--GGEFSEGFDTPE 286 (309)
T ss_pred -----hHHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEeccc--CCcccCCCCCHH
Confidence 0001 111111112222211 11123322223333 5789999999999999994210 011222356679
Q ss_pred HHHHHHHcCCCccCeEeccCCCCc
Q 003550 365 EYLSFIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 365 e~~~~i~~G~~~VDgIiTD~P~~a 388 (811)
+|+++.+.| +|||+||+|+.+
T Consensus 287 ~~~~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 287 DLKRLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred HHHHHHhhC---CCeEEeCCHhhc
Confidence 999999999 999999999864
No 76
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.5e-34 Score=307.55 Aligned_cols=242 Identities=24% Similarity=0.310 Sum_probs=191.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|||++.+
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad--~iE~Dv~lTkDg~lVv~HD~~~drt~~~~~----------------- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLDRTTNGLG----------------- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCC--EEEeeccCccCCcEEEecccchhhhccCcc-----------------
Confidence 5799999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEEeeccchhhhhcCchHHHHHHHHhhhc-
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV- 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~-~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~- 248 (811)
.+.++|++|+++++.+.+ ....| + +.+|||+|+++.+. ..++++|+|.+....+... +...++..+++.
T Consensus 66 --~~~~~~~~~~~~~~~~~~---~~~~~-~--~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~-~~~~~~~~~~~~~ 136 (257)
T COG0584 66 --TVRDLTLAELKRLDAGSF---RIPTF-G--EEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGK-ILAALLALLKRYG 136 (257)
T ss_pred --ccccCChhhhcCcccCcc---cCCCC-C--CccCCHHHHHHHhcccCCeEEEecCCCcccchhh-hHHHHHHHHHHhc
Confidence 677999999999995542 23444 3 69999999999884 5899999998765543322 345555555443
Q ss_pred C-----ceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHH--hhhHHHHHhhcccccCCCcccccCC
Q 003550 249 V-----VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSL--LKNLTFIKTFASGILVPKDYIWPVD 321 (811)
Q Consensus 249 ~-----~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l--~~~L~~i~~~a~gi~~~~~~i~~~~ 321 (811)
+ ..++|||+.+.++.+++..| ..++++++..... |..+ ...+..+..++.++++.+..+.+.
T Consensus 137 ~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 205 (257)
T COG0584 137 GTAADDRVILSSFDHAALKRIKRLAP--DLPLGLLLDATDQ--------YDWMELPRALKEVALYADGVGPDWAMLAEL- 205 (257)
T ss_pred ccCCCCceEEEecCHHHHHHHHHhCc--CCceEEEEcccch--------hhhhhccchhhHHHhhhcccCcccceeccc-
Confidence 2 35999999999999999988 6788874432210 2222 225666777888877765544321
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
.+..+..+|..|+.|++|||+++ +.+..+.+.| ||||+||+|+.+.+.++
T Consensus 206 -------~~~~v~~~~~~gl~v~~~tv~~~------------~~~~~~~~~g---vd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 -------LTELVDDAHAAGLKVHVWTVNEE------------DDIRLLLEAG---VDGLITDFPDLAVAFLN 255 (257)
T ss_pred -------ccHHHHHHHhCCCeEEEEecCcH------------HHHHHHHHcC---CCEEEcCCHHHHHHhhc
Confidence 35699999999999999999975 4488999999 99999999998876653
No 77
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.6e-34 Score=303.53 Aligned_cols=226 Identities=16% Similarity=0.059 Sum_probs=167.4
Q ss_pred CEEEEeCCCCCC---CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCC
Q 003550 92 PFVVARGGFSGI---FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (811)
Q Consensus 92 plviaHRG~~~~---~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~ 168 (811)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+|+|+|++.+
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~---~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~~--------------- 65 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY---GIELDVQLTADGEVVVFHDDNLKRLTGVEG--------------- 65 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC---cEEEEeeECCCCCEEEeccchHhhhcCCCC---------------
Confidence 348999999874 79999999999999995 699999999999999999999999998765
Q ss_pred CCcccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 169 ~~g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||++++++. . +++||||+|+|+.+++ ..++||||.+.. ....+++.+++++++
T Consensus 66 ----~v~~~t~~eL~~l~~~~---------~--~~~iPtL~evl~~~~~~~~l~iEiK~~~~---~~~~l~~~v~~~l~~ 127 (237)
T cd08585 66 ----RVEELTAAELRALRLLG---------T--DEHIPTLDEVLELVAGRVPLLIELKSCGG---GDGGLERRVLAALKD 127 (237)
T ss_pred ----ccccCCHHHHhcCCCCC---------C--CCCCCCHHHHHHHhccCceEEEEEccCCc---cchHHHHHHHHHHHh
Confidence 78999999999998753 2 3799999999999965 579999997542 234577888888887
Q ss_pred cCc-eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHH-HHHhhcccccCCCcccccCCCccc
Q 003550 248 VVV-NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLT-FIKTFASGILVPKDYIWPVDESLY 325 (811)
Q Consensus 248 ~~~-~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~-~i~~~a~gi~~~~~~i~~~~~~~~ 325 (811)
++. .+|+||+...++++++..| +.++.+++.... .........+.+...+. .....++.+.+++..
T Consensus 128 ~~~~v~i~SF~~~~l~~l~~~~p--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 195 (237)
T cd08585 128 YKGPAAIMSFDPRVVRWFRKLAP--GIPRGQLSEGSN-DEADPAFWNEALLSALFSNLLTRPDFIAYHLDD--------- 195 (237)
T ss_pred cCCCEEEEECCHHHHHHHHHHCC--CCCEEEEecCCc-ccccccchhHHHHHhhhhhhccCCCEEEeChhh---------
Confidence 753 5899999999999999998 677776432111 00000000000001000 000012222222111
Q ss_pred CCCChHHHHHHHHc-CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEec
Q 003550 326 LLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (811)
Q Consensus 326 l~~~~~~V~~ah~~-Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiT 382 (811)
...++|+.+|++ |++|++||||++ ++|++++++| +++|+-
T Consensus 196 --~~~~~v~~~~~~~G~~v~vWTVnd~------------~~~~~l~~~G---~~~i~~ 236 (237)
T cd08585 196 --LPNPFVTLARALLGMPVIVWTVRTE------------EDIARLKQYA---DNIIFE 236 (237)
T ss_pred --CcCHHHHHHHHhcCCcEEEEeCCCH------------HHHHHHHHhC---CeeEeC
Confidence 135699999999 999999999865 8999999999 999873
No 78
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=4.1e-34 Score=300.76 Aligned_cols=224 Identities=10% Similarity=0.133 Sum_probs=163.6
Q ss_pred EEEeCCC--CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCc-chhhhhcccccccccCCCCCC
Q 003550 94 VVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS-NIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 94 viaHRG~--~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT-~~~~~~~~~~~~y~~~G~~~~ 170 (811)
.|||||+ ++.+||||+.||+.|++.|++ +||+|||+||||++||+||.+++|+. .+.. .++
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~----------~~~---- 64 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYR--VFEVDLSLTSDGVLVARHSWDESLLKQLGLP----------TSK---- 64 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCCEEEEECCcCchhhhcCCc----------ccc----
Confidence 4899996 789999999999999999999 99999999999999999999998752 2110 011
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEEeeccchhhhhcCchHHHHHHHHhhh
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~---~~l~leiK~~~~~~~~~~~~~~~l~~~lk~ 247 (811)
.+.++|++||++++.. .+ ++||||+|+++++++ ..++||||.+.. .....+...+++.+++
T Consensus 65 --~i~~~t~~el~~~~~~----------~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~--~~~~~~~~~l~~~~~~ 128 (237)
T cd08583 65 --NTKPLSYEEFKSKKIY----------GK--YTPMDFKDVIDLLKKYPDVYIVTDTKQDDD--NDIKKLYEYIVKEAKE 128 (237)
T ss_pred --cccCCCHHHHhhcccc----------CC--CCCCCHHHHHHHHHhCCCeEEEEEecCCCc--ccHHHHHHHHHHHHHh
Confidence 5889999999887642 33 799999999999963 358899996532 1112356678888877
Q ss_pred cC--c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCC
Q 003550 248 VV--V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVD 321 (811)
Q Consensus 248 ~~--~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~ 321 (811)
++ + .+++||+...|+.+++..| ....++....... ..... .+..++. .+.++.+++.+
T Consensus 129 ~~~~~~~~v~~~SF~~~~L~~~~~~~p--~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~----- 192 (237)
T cd08583 129 VDPDLLDRVIPQIYNEEMYEAIMSIYP--FKSVIYTLYRQDS------IRLDE---IIAFCYENGIKAVTISKNY----- 192 (237)
T ss_pred hcccccceeEEEecCHHHHHHHHHhCC--CcceeeEeccccc------cchHH---HHHHHHHcCCcEEEechhh-----
Confidence 52 3 4899999999999999887 3334432221110 00001 1111122 13334443322
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
..+++|+.+|++|++|++||||+. ++|++++++| ||||+||+|.
T Consensus 193 ------~~~~~v~~~~~~Gl~v~vwTVn~~------------~~~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 193 ------VNDKLIEKLNKAGIYVYVYTINDL------------KDAQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred ------cCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCCCC
Confidence 236799999999999999999864 8999999999 9999999985
No 79
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=1.6e-33 Score=296.33 Aligned_cols=239 Identities=24% Similarity=0.315 Sum_probs=154.5
Q ss_pred eCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccc
Q 003550 97 RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSID 176 (811)
Q Consensus 97 HRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d 176 (811)
|||+++.+||||++||+.|++.|++ +||||||+||||++||+||.+++|+|++.+ .+.|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~--~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~~-------------------~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGAD--GIELDVQLTKDGVPVVFHDDTLDRTTGGDG-------------------PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSS--EEEEEEEE-TTS-EEE-SSSBSTTTSSTES-------------------BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCC--eEcccccccCCceeEeccCCeeeeecCCCc-------------------eecc
Confidence 9999999999999999999999999 999999999999999999999999999876 7999
Q ss_pred cCHHhhcccc-cccc--ccCCCCCCCCCCcccccHHHHHHhhCCCceEE--eeccchhhhhcCc-hHHHHHHHHhhhc--
Q 003550 177 YTLNDLSNII-LNQG--VYSRTDKFDGNGFQILTVQDMARQIKPPGLWL--NIQHDAFYAQHNL-SMRSFVLSVSRSV-- 248 (811)
Q Consensus 177 ~t~~eL~~l~-~~~~--~~~~~~~~~~~~~~iptL~evl~~~~~~~l~l--eiK~~~~~~~~~~-~~~~~l~~~lk~~-- 248 (811)
+||+||++++ +..+ ...+...+.+ ..+||||+|+|+++...++.+ ++|.......... .+...++..+...
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~-~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPG-KQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILK 138 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCT-CB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHhhCcccccCCcccccccceec-ccccCcHHHHHHhhhhccceeEEEEeecccccchhhcccccccccccccccc
Confidence 9999999999 4322 1223333333 358999999999965555444 4443211111101 2233333333333
Q ss_pred -------CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHH--HhhhHHHHHhhcccccCCCccccc
Q 003550 249 -------VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS--LLKNLTFIKTFASGILVPKDYIWP 319 (811)
Q Consensus 249 -------~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~--l~~~L~~i~~~a~gi~~~~~~i~~ 319 (811)
...+++||+...++.+++..| ..++++++..... .+.+ .......+.. .++.. .++.
T Consensus 139 ~~~~~~~~~i~~~sf~~~~l~~l~~~~~--~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~---~~~~ 204 (256)
T PF03009_consen 139 NSKQALSRRIIISSFDPEALKQLKQRAP--RYPVGFLFEQDDE-------APADISLFELYKFVKC--PGFLA---SVWN 204 (256)
T ss_dssp HHHHHHCTSEEEEESCHHHHHHHHHHCT--TSEEEEEESSCHH-------HHHH-CCHHHHHHHTT--TEEEE---EHGG
T ss_pred ccccccccccccccCcHHHHHHHHhcCC--CceEEEEeccCcc-------ccccchhhHHHHhhcc--ccccc---cccc
Confidence 235899999999999999998 5777765432211 0111 0001112211 11111 0111
Q ss_pred CCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCC
Q 003550 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (811)
Q Consensus 320 ~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~ 387 (811)
.. .....+++|+.+|++|++|++||||++ +.++++++++.| ||||+||+|+|
T Consensus 205 ~~---~~~~~~~~v~~~~~~g~~v~~wtvn~~----------~~~~~~~l~~~g---vdgIiTD~P~~ 256 (256)
T PF03009_consen 205 YA---DRLGNPRLVQEAHKAGLKVYVWTVNDP----------DVEDMKRLLDLG---VDGIITDFPDT 256 (256)
T ss_dssp GG---HHCEBHHHHHHHHHTT-EEEEBSB-SH----------SHHHHHHHHHHT----SEEEES-HHH
T ss_pred cc---cccccHHHHHHHHHCCCEEEEEecCCc----------HHHHHHHHHhCC---CCEEEEcCCCC
Confidence 10 001136799999999999999999863 148999999999 99999999964
No 80
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=9.5e-33 Score=278.82 Aligned_cols=188 Identities=27% Similarity=0.324 Sum_probs=152.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
+|||+|+|+++++. ..++||+|.+.. +..+++.+++++
T Consensus 48 ----------------------------------i~tL~e~l~~~~~~---~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 ----------------------------------IPTLEEVLELVKGG---VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred ----------------------------------CCCHHHHHHhcccC---cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 68999999999873 689999997643 124678899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. ++|+|+||++..+.++++. |+++++++++......... .......++.+.++. ....+
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~----------~~~~~ 150 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLA-ELARALGADAVNPHY----------KLLTP 150 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhh-hHHHhcCCeEEccCh----------hhCCH
Confidence 999876 7999999999999999999 9999999987642211100 001111122233321 12457
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.+++.+|++|++|++||+|+.. ++..++ ++|||||+||+
T Consensus 151 ~~i~~~~~~g~~v~~wtvn~~~-------------~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVNDPE-------------DARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHcCCEEEEEcCCCHH-------------HHHHHH-HCCCCEEecCC
Confidence 8999999999999999999874 577776 99999999996
No 81
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=99.97 E-value=1.3e-29 Score=255.94 Aligned_cols=185 Identities=21% Similarity=0.166 Sum_probs=147.6
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||++||+.|++.|++ +||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~--~iE~Dv~~tkDg~~vv~Hd------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGAD--GVELDVQLTKDGVLVVIHD------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcC-------------------------------
Confidence 6899999999999999999999999999 9999999999999999999
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcCchHHHHHHHHhhhcCc--
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV-- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~-- 250 (811)
+|||+|+|+++++ ..+++|+|.+.. ...+.+.+++++++++.
T Consensus 48 -------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~----~~~~~~~l~~~i~~~~~~~ 92 (189)
T cd08556 48 -------------------------------IPTLEEVLELVKGGVGLNIELKEPTR----YPGLEAKVAELLREYGLEE 92 (189)
T ss_pred -------------------------------CCCHHHHHHhcccCcEEEEEECCCCC----chhHHHHHHHHHHHcCCcC
Confidence 6899999999985 679999997643 33567889999999864
Q ss_pred -eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCC
Q 003550 251 -NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPH 329 (811)
Q Consensus 251 -~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~ 329 (811)
.+++||+...++.+++..| +.++.+........+ ... .......+.++.+++.. ..
T Consensus 93 ~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~v~~~~~~-----------~~ 149 (189)
T cd08556 93 RVVVSSFDHEALRALKELDP--EVPTGLLVDKPPLDP-------LLA---ELARALGADAVNPHYKL-----------LT 149 (189)
T ss_pred CEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcccc-------hhh---hHHHhcCCeEEccChhh-----------CC
Confidence 5999999999999999988 667776443221110 000 00111224444443322 23
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
..+++.+|++|++|++||+|+. +++++++..| ||||+||+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~------------~~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDP------------EDARRLLALG---VDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCH------------HHHHHHHHCC---CCEEecCC
Confidence 6799999999999999999764 8999999999 99999996
No 82
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.96 E-value=1.3e-29 Score=255.31 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=135.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
||||||+++.+||||+.||++|++.|+++||+|||+||||++|++||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 6899999999999999999999999999999999999999999999999987530
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcCccHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTNSV 565 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~----~~~gi~IEiK~~~~~~~~~g~~~~~~v 565 (811)
.+++|||+|+|+++++.. ..+.++||+|.+... ...+.+++
T Consensus 56 -------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~----~~~~~~~~ 100 (179)
T cd08555 56 -------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPE----YDEFLAKV 100 (179)
T ss_pred -------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCc----chHHHHHH
Confidence 157999999999999831 126899999966431 12467789
Q ss_pred HHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccC
Q 003550 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645 (811)
Q Consensus 566 ~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~ 645 (811)
++.++++++... .++|+++||. . + +++...+.+ ...
T Consensus 101 ~~~~~~~~~~~~-~~~v~i~sf~--------~---------~----------------------~~~~~~~~~----~~~ 136 (179)
T cd08555 101 LKELRVYFDYDL-RGKVVLSSFN--------A---------L----------------------GVDYYNFSS----KLI 136 (179)
T ss_pred HHHHHHcCCccc-CCCEEEEeec--------c---------c----------------------CCChhcccc----hhh
Confidence 999999873211 1699999990 0 0 000000000 112
Q ss_pred CCHHHHHHHHHcCCcEEEEecCC-cccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 646 SATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 646 ~~~~~V~~~~~~Gl~V~vwtvnn-e~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..+++|+++|++|++|++||+|+ .. ++..++ ++||||||||+
T Consensus 137 ~~~~~v~~~~~~g~~v~~wtvn~~~~-------------~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 137 KDTELIASANKLGLLSRIWTVNDNNE-------------IINKFL-NLGVDGLITDF 179 (179)
T ss_pred cCHHHHHHHHHCCCEEEEEeeCChHH-------------HHHHHH-HcCCCEEeCCC
Confidence 35789999999999999999998 53 577777 99999999996
No 83
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.95 E-value=1.9e-27 Score=239.58 Aligned_cols=165 Identities=25% Similarity=0.266 Sum_probs=130.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
||||||+++.+||||+.||+.|++.|++ ++|+|||+||||++|++||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~--~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGAR--GLELDVRLTKDGELVVYHGPTLDRTTA----------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEcCCCeEEEECCCccccccC-----------------------
Confidence 6899999999999999999999999999 999999999999999999999988760
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEEeeccchhhhhcCchHHHHHHHHh
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--------~~l~leiK~~~~~~~~~~~~~~~l~~~l 245 (811)
++++|||+|+|+++++ ..++||+|.+.. ....+.+.+++.+
T Consensus 56 ----------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~---~~~~~~~~~~~~~ 104 (179)
T cd08555 56 ----------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP---EYDEFLAKVLKEL 104 (179)
T ss_pred ----------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC---cchHHHHHHHHHH
Confidence 2589999999999864 468999997642 2345677888888
Q ss_pred hhcC---c---eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCccccc
Q 003550 246 RSVV---V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWP 319 (811)
Q Consensus 246 k~~~---~---~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~ 319 (811)
++++ . .+++|| ... ..... ....
T Consensus 105 ~~~~~~~~~~~v~i~sf---------~~~------------~~~~~-------------------~~~~----------- 133 (179)
T cd08555 105 RVYFDYDLRGKVVLSSF---------NAL------------GVDYY-------------------NFSS----------- 133 (179)
T ss_pred HHcCCcccCCCEEEEee---------ccc------------CCChh-------------------cccc-----------
Confidence 8876 3 488888 000 00000 0000
Q ss_pred CCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 320 ~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
+....+++|+++|++|++|++||+|.+ .++++++++.| ||||+||+
T Consensus 134 -----~~~~~~~~v~~~~~~g~~v~~wtvn~~-----------~~~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 134 -----KLIKDTELIASANKLGLLSRIWTVNDN-----------NEIINKFLNLG---VDGLITDF 179 (179)
T ss_pred -----hhhcCHHHHHHHHHCCCEEEEEeeCCh-----------HHHHHHHHHcC---CCEEeCCC
Confidence 011136799999999999999999861 38999999999 99999996
No 84
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.93 E-value=1.8e-25 Score=240.60 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=172.8
Q ss_pred hHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCHHHHhccCccc
Q 003550 424 TNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQI 503 (811)
Q Consensus 424 Tl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~ELk~L~~~~ 503 (811)
...+|..|.+.|||+||+|||+||||+|||+||.++.++ + +.+ .+.++||+||+.++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~------------------~~~-~V~dlTleqL~~l~~~~ 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G------------------IKL-LVSDLTAEQLESILDYS 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C------------------CcE-EeecCcHHHHhccCCcc
Confidence 467999999999999999999999999999999999774 4 334 79999999999999875
Q ss_pred cCCcccccccCC---cCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhc-------C---ccHHHHHHHHHH
Q 003550 504 SNPYFKFKLFRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ-------G---MSVTNSVMEALG 570 (811)
Q Consensus 504 ~~p~~~~~~~rn---~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~-------g---~~~~~~v~~~L~ 570 (811)
+... ....... ..+.+ .++|||+|+|+.+... ++++||||.|...+... . ..+++.+++.+-
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~-~~~pTL~evL~~lp~~---iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf 151 (300)
T cd08578 77 LDDL-NSEISDMVDLKRLLS-SRVVSLETLLELLPPS---IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVF 151 (300)
T ss_pred cccc-cccccccchhhhhcC-CcCCCHHHHHHhhccC---CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHH
Confidence 4210 0000000 11222 6899999999999664 79999999988754211 0 136677777776
Q ss_pred hcCC-C---CCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccc--------------------------cchhchHhH
Q 003550 571 NAGY-N---KQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN--------------------------IRDALNQTI 619 (811)
Q Consensus 571 ~~g~-~---~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~--------------------------~~d~~~~~l 619 (811)
++.. . ....++|+|+||||++|..++.+ |+||+.|+++.. ..|....++
T Consensus 152 ~har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si 231 (300)
T cd08578 152 DHARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSI 231 (300)
T ss_pred HHhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhH
Confidence 5531 1 11237999999999999999998 999999998764 234455678
Q ss_pred HHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 620 EDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 620 ~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
++...||..-++- .++.. ...|...+.+|+.+|++||.+.+|+-.++. ......+.||||++.
T Consensus 232 ~~Av~fA~~~nL~--Giv~~-~~~L~~~P~lV~~ik~~GL~lv~~g~~~~~--------------~~~~~~~~~vnG~~~ 294 (300)
T cd08578 232 KEAVRFAKNNNLL--GLILP-YSLLNIVPQLVESIKSRGLLLIASGEPESL--------------IEVAEAGDGINGVVT 294 (300)
T ss_pred HHHHHHHHHcCCc--EEEec-HHHHhhChHHHHHHHHcCCEEEEECCCCcc--------------ccccccccCCceEEe
Confidence 8888888776662 22222 223556789999999999999999976421 222334789999998
Q ss_pred CC
Q 003550 700 EF 701 (811)
Q Consensus 700 D~ 701 (811)
|.
T Consensus 295 ~~ 296 (300)
T cd08578 295 ED 296 (300)
T ss_pred CC
Confidence 85
No 85
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.87 E-value=4.6e-21 Score=206.51 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=157.3
Q ss_pred HHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccc
Q 003550 108 SSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIIL 187 (811)
Q Consensus 108 Tl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~ 187 (811)
+..+|..|.++|+| +||+|||+||||++||+||.+++++ ++.+ .+.|+|++||+.++.
T Consensus 17 ~~~sfvtAsslgad--~VE~DVqLTkDgvpVV~HD~~i~~t-~~~~-------------------~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGE--YLRVKVCVLKDGTPVVAPEWFVPVG-GIKL-------------------LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCC--EEEEEEEECcCCEEEEECCCceEec-CCcE-------------------EeecCcHHHHhccCC
Confidence 56799999999999 9999999999999999999999764 4443 799999999999987
Q ss_pred cccccCCC--------CCCCCCCcccccHHHHHHhhCC-CceEEeeccchhhhhcC-----------chHHHHHHHHhhh
Q 003550 188 NQGVYSRT--------DKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHN-----------LSMRSFVLSVSRS 247 (811)
Q Consensus 188 ~~~~~~~~--------~~~~~~~~~iptL~evl~~~~~-~~l~leiK~~~~~~~~~-----------~~~~~~l~~~lk~ 247 (811)
..+..... ..+.+ .++|||+|+|+.+++ .+++||||+|..+.... ..+++.+++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLLS--SRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccccchhhhhcC--CcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 65432100 11223 689999999999865 68999999988653211 1345556665543
Q ss_pred c-----------CceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCcc-C---C------------CcccchHHHhh-h
Q 003550 248 V-----------VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-E---P------------TTNQTYGSLLK-N 299 (811)
Q Consensus 248 ~-----------~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~---~------------~~~~~y~~l~~-~ 299 (811)
+ .-.++|||++++|..|+-+.| ++|+.|+..+...- . . .....|.+... .
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp--~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~S 230 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQP--NFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRS 230 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCC--CCCEEEEecCCccccccccccccccccccccccccccccCchhhh
Confidence 3 225999999999999999998 78998754433210 0 0 00113445444 4
Q ss_pred HHHHHhhcc-----cccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCC
Q 003550 300 LTFIKTFAS-----GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGD 374 (811)
Q Consensus 300 L~~i~~~a~-----gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~ 374 (811)
+++...||. |+..+.+. |...+.+|+.++++||-+++|+-.+. ..+ ....+.|
T Consensus 231 i~~Av~fA~~~nL~Giv~~~~~---------L~~~P~lV~~ik~~GL~lv~~g~~~~-----------~~~-~~~~~~~- 288 (300)
T cd08578 231 IKEAVRFAKNNNLLGLILPYSL---------LNIVPQLVESIKSRGLLLIASGEPES-----------LIE-VAEAGDG- 288 (300)
T ss_pred HHHHHHHHHHcCCcEEEecHHH---------HhhChHHHHHHHHcCCEEEEECCCCc-----------ccc-ccccccC-
Confidence 555555554 44443332 33447899999999999999996421 011 1124446
Q ss_pred CccCeEeccC
Q 003550 375 FSVDGVLSDF 384 (811)
Q Consensus 375 ~~VDgIiTD~ 384 (811)
|||++.|.
T Consensus 289 --vnG~~~~~ 296 (300)
T cd08578 289 --INGVVTED 296 (300)
T ss_pred --CceEEeCC
Confidence 99999875
No 86
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.84 E-value=3.4e-21 Score=211.80 Aligned_cols=254 Identities=21% Similarity=0.251 Sum_probs=187.7
Q ss_pred CCEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCC
Q 003550 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (811)
Q Consensus 91 ~plviaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~ 170 (811)
...||+|||++|.+||||++||++|++.|+| .+|||||+|+||+.|++||.+.+|++++..
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad--~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~----------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGAD--LIELDVQMTSDGVPVILHDSTTVRVTGVPE----------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCc--EEEeccccCCCCceEEeecCcceeeeccee-----------------
Confidence 6889999999999999999999999999999 999999999999999999999999998775
Q ss_pred cccccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCC--ceEEeeccchhhhhcCchHHHHHHHHhhhc
Q 003550 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (811)
Q Consensus 171 g~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~--~l~leiK~~~~~~~~~~~~~~~l~~~lk~~ 248 (811)
.+.++||.|++++..........+.+. .+++|+|+|..+.+-.. .++-|.| +.+.+.+++.+++.
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~~~--~~~~~~l~e~v~~~~~~n~~~l~d~~---------~~~~~~vl~~l~~~ 195 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPIIT--LEKLLTLAEAVASVVGNNVAMLNDVK---------LLVVDKVLEALKNA 195 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccccc--hhhhccHHHHHHHHHcCChhhhhhhh---------hhhHHHHHHHHHHH
Confidence 578999999999987765433111111 36899999999987543 2222333 35666777777665
Q ss_pred Cc-------eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCC
Q 003550 249 VV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVD 321 (811)
Q Consensus 249 ~~-------~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~ 321 (811)
+. ..+|||++-.+.++++..+ ...+.. .+.. ....+...++.++.++..++..+.+..
T Consensus 196 ~~~~~~~~kv~v~s~~~~~l~~~~~~~~--~~~i~~-~~~~------------~~ls~~~dik~~~~~~~~~~~~~~~~~ 260 (341)
T KOG2258|consen 196 TSDFSLYDKVLVQSFNPIVLYRLKKLDP--FILIGD-TWRF------------TFLSGIEDIKKRAFAVVSSKLAIFPVS 260 (341)
T ss_pred hcCCCccceEEEEecCcHHHHHhccCCc--eEEecc-eecc------------hhhccchhhhcccceeeechHHHHHHH
Confidence 43 4999999999999998765 211111 0100 011123456777778877777776653
Q ss_pred CcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhh
Q 003550 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (811)
Q Consensus 322 ~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~ 393 (811)
....+.....++...++.++.|+.+.++++....++|+.|+.-++..++.+ ..++|..||++-++-++.+
T Consensus 261 ~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 330 (341)
T KOG2258|consen 261 DSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWITN--VGIDGYITDFHLTAPRLTD 330 (341)
T ss_pred HHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeecc--ccccCceeeccchhhHhhc
Confidence 222223333789999999999999999999778888887887666666652 3488899999888776654
No 87
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.80 E-value=5.7e-19 Score=176.75 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=126.9
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCcccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~ 489 (811)
|||||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 689999 999999999998 9999999999 9999999996542
Q ss_pred CCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHH
Q 003550 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (811)
Q Consensus 490 dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L 569 (811)
++|||+|+|+++++. .++||||.+ .+++++.+++
T Consensus 42 ---------------------------------~~PtLeEvL~~~~~~----~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ---------------------------------NGELLEDWLKEYNHG----TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ---------------------------------CCCCHHHHHHhcccc----cEEEEECch---------hHHHHHHHHH
Confidence 259999999999754 589999943 2677899999
Q ss_pred HhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCH
Q 003550 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (811)
Q Consensus 570 ~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~ 648 (811)
++++.. ++++|+||++..+.+++.- +++-+..--.+. .+..+.- ..-++ ++|.+.. ...-.+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E~----~~~~~~~-~~~~~--~VW~D~f-----~~~~~~~ 139 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYEP----IPTALSL-YEKAD--WVWIDSF-----TSLWLDN 139 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeeccccc----chHHHHh-hcccc--EEEEecc-----cccCCCH
Confidence 999987 7999999999999999986 444333221111 1111100 11111 2332221 1123467
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHH--HHH--hcCCCEEEeCChHH
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT--YYE--GAGIDGVITEFPMT 704 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~--~l~--~~GVDGIiTD~P~~ 704 (811)
+.++++.++|.++..= ..|-.. -|| ..++.. ++. +.--++|+||+|..
T Consensus 140 ~~~~~~~~~~~~~c~V--SpELh~--~~~----~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 140 DLILKLLKAGKKICLV--SPELHG--RDH----LAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHCCcEEEEE--CHHHcC--CCh----HHHHHHHHhhhhccccCeeEeccCccc
Confidence 8999999999998543 333211 111 123332 221 12368999999975
No 88
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.76 E-value=2.2e-17 Score=165.35 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=124.4
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCccc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~ 173 (811)
|||||| ||+.||+.|++. + ++|+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--d--gvE~DVr~t-Dg~lVV~HD~~l~--------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--F--GVETDIRDY-GGQLVISHDPFVK--------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--C--EEEEEEEee-CCeEEEECCCCCC---------------------------
Confidence 589999 999999999999 7 999999999 9999999999772
Q ss_pred ccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEEeeccchhhhhcCchHHHHHHHHhhhcCc---
Q 003550 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV--- 250 (811)
Q Consensus 174 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~--- 250 (811)
++|||+|+|++++...+.||||.+ .++..+.++++++++
T Consensus 42 ------------------------------~~PtLeEvL~~~~~~~l~inIK~~--------~l~~~l~~li~~~~~~~~ 83 (192)
T cd08584 42 ------------------------------NGELLEDWLKEYNHGTLILNIKAE--------GLELRLKKLLAEYGITNY 83 (192)
T ss_pred ------------------------------CCCCHHHHHHhcccccEEEEECch--------hHHHHHHHHHHhcCCcce
Confidence 459999999999887799999943 367889999999876
Q ss_pred eEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCCh
Q 003550 251 NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHT 330 (811)
Q Consensus 251 ~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~ 330 (811)
.+++||++..+++++...+ ++..+. +..|+. . ..-.+...+.|+-++..+- .-.+.
T Consensus 84 vi~ssf~~~~l~~~~~~~~----~i~tr~---Se~E~~--~-------~~~~~~~~~~~VW~D~f~~--------~~~~~ 139 (192)
T cd08584 84 FFLDMSVPDIIKYLENGEK----RTATRV---SEYEPI--P-------TALSLYEKADWVWIDSFTS--------LWLDN 139 (192)
T ss_pred EEEEcCCHHHHHHHhcCCC----eeEEee---cccccc--h-------HHHHhhccccEEEEecccc--------cCCCH
Confidence 3899999999999977542 122211 222210 0 0001122355543332211 12236
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHH--HHHcCCCccCeEeccCCCCc
Q 003550 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS--FIDNGDFSVDGVLSDFPLTP 388 (811)
Q Consensus 331 ~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~--~i~~G~~~VDgIiTD~P~~a 388 (811)
+.++...++|.+|..= ..|. ++-|-.++++. .+....-.-+.|.||+|..+
T Consensus 140 ~~~~~~~~~~~~~c~V--SpEL-----h~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~~ 192 (192)
T cd08584 140 DLILKLLKAGKKICLV--SPEL-----HGRDHLAEWEAKQYIEFLKENFDALCTKVPDLW 192 (192)
T ss_pred HHHHHHHHCCcEEEEE--CHHH-----cCCChHHHHHHHHhhhhccccCeeEeccCcccC
Confidence 7889999999998652 2220 01111133332 12211011589999999864
No 89
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.21 E-value=6.4e-11 Score=123.70 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=123.4
Q ss_pred ecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccccccccCCCcCCCccccccccccCccccccC
Q 003550 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFS 490 (811)
Q Consensus 411 IAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~d 490 (811)
-+|+=+.-..| +..|++.||++||.||+++ ||+++|.||..+.+... -+.+
T Consensus 4 hsHNDY~r~~P------l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~ 54 (228)
T cd08577 4 HSHNDYWRKRP------LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLES 54 (228)
T ss_pred ccccccccccc------hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHH
Confidence 46665555444 6779999999999999999 99999999988877521 4789
Q ss_pred CCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHH
Q 003550 491 LIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALG 570 (811)
Q Consensus 491 lT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~ 570 (811)
+++++|.++..... +.+. ........++||||...... ..++..+++.++
T Consensus 55 Lyl~pL~~~l~~~n-----------~~~~---------------~~~~~~l~LlIDiKt~g~~t----~~~l~~~L~~~~ 104 (228)
T cd08577 55 LYLDPLLEILDQNN-----------GQAY---------------NDPEQPLQLLIDIKTDGEST----YPALEEVLKPYI 104 (228)
T ss_pred HhHHHHHHHHHHcC-----------CCCC---------------CCCCCceEEEEEECCCChHH----HHHHHHHHHHHH
Confidence 99999987543321 1110 22212368999999654321 135667788888
Q ss_pred hcCCCCC------CCcEEEEEeCChHHHHHHHhccCceEEEEEccccc-hhchHhHHHHH-----Hhhhhhccccceeec
Q 003550 571 NAGYNKQ------TALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR-DALNQTIEDIK-----KFADSVVLSKESVYP 638 (811)
Q Consensus 571 ~~g~~~~------~~~~ViiqSfd~~~L~~lk~~p~~~~~~l~~~~~~-d~~~~~l~~i~-----~~a~~v~~~~~~i~p 638 (811)
+.++... +.=.|+++.--|..+.. ...+.-+.++.... +........+. .|...++.+....++
T Consensus 105 ~~~~~~~~~~~~~~pvtvV~tGn~p~~~~~----~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~ 180 (228)
T cd08577 105 DIGYLSYYDKLVPGPVTVVITGNRPKEEVK----SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTP 180 (228)
T ss_pred hcCceeecCcEEecCeEEEEeCCCChhhhc----cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCCCCC
Confidence 8777632 11135666655544422 12222223333221 11110000110 111111111000011
Q ss_pred CCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 639 ~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
...+..-.++|+.+|++|+++.+||+++.. ..+..++ ++|||+|+||.
T Consensus 181 --~~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~------------~~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 181 --EDEKEKLKSIIDKAHARGKKVRFWGTPDRP------------NVWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEccCChH------------HHHHHHH-HhCCCEEecCC
Confidence 011112246899999999999999997631 2366665 99999999995
No 90
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.18 E-value=7.9e-10 Score=116.59 Aligned_cols=222 Identities=16% Similarity=0.219 Sum_probs=131.0
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcE-EEeecCccccccccCCCcCCCccccccccccCccccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP-FCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~-Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v 488 (811)
+|||| =||+.....|+..||..||+||...++|.+ ..+||.--+-- .| ..
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~---------------------r~-c~ 52 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCF---------------------RG-CT 52 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccc---------------------cC-Cc
Confidence 46776 599999999999999999999999999998 77888422210 00 11
Q ss_pred cCCCHHHHhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcC------CCceEEEEecchhHHHhh---cCc
Q 003550 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN------SLSGVLISIENAVYLAEK---QGM 559 (811)
Q Consensus 489 ~dlT~~ELk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~------~~~gi~IEiK~~~~~~~~---~g~ 559 (811)
..-- +.++|+..++.. ..+-+.+++|.+....+. .|.
T Consensus 53 ~~~~----------------------------------f~~~l~~~r~~ttpg~~~~l~lv~lDlK~~~~~~~~~~~ag~ 98 (265)
T cd08576 53 AREM----------------------------------FDEILDYRRNGTTPGFRENLIFVWLDLKNPDLCGECSINAGR 98 (265)
T ss_pred HHHH----------------------------------HHHHHHHHHhcCCCCccceeEEEEEEcCCCCcCHHHHHHHHH
Confidence 1111 122222222221 235789999987654322 222
Q ss_pred cHHHHHHHHHHhcCCCCCCCcEEE--EEeC---ChHHHHHHHhc-cCceEE-EEEccccchhc-hHhHHHHHHhhhhhcc
Q 003550 560 SVTNSVMEALGNAGYNKQTALKVM--IQST---DSSVLMKLREK-TSYELV-YKVKENIRDAL-NQTIEDIKKFADSVVL 631 (811)
Q Consensus 560 ~~~~~v~~~L~~~g~~~~~~~~Vi--iqSf---d~~~L~~lk~~-p~~~~~-~l~~~~~~d~~-~~~l~~i~~~a~~v~~ 631 (811)
++.+ ++|+.++-.. ...|++ ++-. +...++.+++. .+-.-. =+.+..-.|.+ .+.+.++.+..+..+
T Consensus 99 ~la~---~ll~~~w~~~-~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~n~~l~~~~~~~~~~~- 173 (265)
T cd08576 99 DLAR---KLLEPYWNGG-SGARALYGFSIPSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSGNEDLEDIRRVYDYGG- 173 (265)
T ss_pred HHHH---HHHHHhhcCC-CCeEEEEEEEeccccchHHHHHHHHHHHhcCchhhHHHhhcccccCCCChHHHHHHHHhcC-
Confidence 3333 3344443221 113443 3332 46677777765 221111 00011001111 123666666656553
Q ss_pred ccceeecCC---ccc--cCCCHHHHHHHHHcCC-----cEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 632 SKESVYPLN---SAF--ITSATDIVQRLQSFKL-----PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 632 ~~~~i~p~~---~~~--l~~~~~~V~~~~~~Gl-----~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
.. .++... .-. ....+++++.+|++|. +|++||+|++. ++..++ ++||||||||+
T Consensus 174 ~~-h~w~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~-------------~~~~ll-~~GVDGIITD~ 238 (265)
T cd08576 174 DG-HIWQSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKGS-------------SVRKLL-RLGVDGIITNY 238 (265)
T ss_pred cC-ceecCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCHH-------------HHHHHH-hcCCCEEEECC
Confidence 21 222111 011 2457899999999999 99999999874 577777 99999999999
Q ss_pred hHHHHHHHHhccc
Q 003550 702 PMTAARYRRNRCL 714 (811)
Q Consensus 702 P~~~~~~~~~~~~ 714 (811)
|+.+.+++++...
T Consensus 239 P~~i~~~l~~~~~ 251 (265)
T cd08576 239 PKRIIDVLKESEF 251 (265)
T ss_pred HHHHHHHHHhccc
Confidence 9999998876654
No 91
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.03 E-value=1.6e-09 Score=113.27 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=107.7
Q ss_pred HHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcchhhhhcccccccccCCCCCCcccccccCHHhhccccccccc
Q 003550 112 YSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191 (811)
Q Consensus 112 ~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~~v~d~t~~eL~~l~~~~~~ 191 (811)
+..|++.|++ +||.|||++ ||+++|.||.++.+. .. .+.++++++|.++--.++
T Consensus 15 l~~Al~~g~~--svEaDV~l~-dg~l~V~Hd~~~l~~---~~-------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFG--SIEADVWLV-NGDLLVAHDEVDLSP---AR-------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCC--EEEEeEEEE-CCEEEEEcChhHcCc---cC-------------------CHHHHhHHHHHHHHHHcC-
Confidence 6779999999 999999999 999999999988655 11 478999999987443321
Q ss_pred cCCCCCCCCCCcccccHHHHHHhhC-CCceEEeeccchhhhhcCchHHHHHHHHhhhcCce-------------EEecCC
Q 003550 192 YSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN-------------YISSPE 257 (811)
Q Consensus 192 ~~~~~~~~~~~~~iptL~evl~~~~-~~~l~leiK~~~~~~~~~~~~~~~l~~~lk~~~~~-------------~isSf~ 257 (811)
+ ... ...+ ...|+||||.+... ...+...+++.+++.+.. +++.-.
T Consensus 69 --------~-~~~--------~~~~~~l~LlIDiKt~g~~---t~~~l~~~L~~~~~~~~~~~~~~~~~~pvtvV~tGn~ 128 (228)
T cd08577 69 --------G-QAY--------NDPEQPLQLLIDIKTDGES---TYPALEEVLKPYIDIGYLSYYDKLVPGPVTVVITGNR 128 (228)
T ss_pred --------C-CCC--------CCCCCceEEEEEECCCChH---HHHHHHHHHHHHHhcCceeecCcEEecCeEEEEeCCC
Confidence 1 011 1111 24689999976421 123444555555554431 222211
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCcc-CCCcccchHH--Hhh-hHHHHHhhcccccCCCcccccCCCcccCCCChHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGS--LLK-NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIV 333 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~~~~~~~y~~--l~~-~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V 333 (811)
+--+ +... ....+ |++.... ....+..+.. +.+ ++... ++....-..+. .-+..=.++|
T Consensus 129 p~~~--~~~~----~~r~~--f~D~~l~~~~~~~~~~~~~~~~S~~~~~~------~~~~~~g~~~~---~q~~~l~~~v 191 (228)
T cd08577 129 PKEE--VKSQ----YPRYI--FFDGRLDEDLPDEQLARLSPMISASFAKF------SKWNGKGDTPE---DEKEKLKSII 191 (228)
T ss_pred Chhh--hccc----cCCeE--EEeCChhhccccccccccceEEEccHHHh------cCCCCCCCCCH---HHHHHHHHHH
Confidence 1111 1111 11222 3333221 1111111110 011 11111 11000000000 0000014689
Q ss_pred HHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC
Q 003550 334 LDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (811)
Q Consensus 334 ~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~ 384 (811)
+.||+.|+++.+||++++ .+.++.+++.| ||+|+||.
T Consensus 192 ~~a~~~Gl~vr~Wtv~~~-----------~~~~~~l~~~G---Vd~I~TDd 228 (228)
T cd08577 192 DKAHARGKKVRFWGTPDR-----------PNVWKTLMELG---VDLLNTDD 228 (228)
T ss_pred HHHHHCCCEEEEEccCCh-----------HHHHHHHHHhC---CCEEecCC
Confidence 999999999999998752 37899999999 99999994
No 92
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=98.97 E-value=4.6e-09 Score=110.86 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=123.8
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcE-EEecCCCCCCCcchhhhhcccccccccCCCCCCcc
Q 003550 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAG-ICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (811)
Q Consensus 94 viaHRG~~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~-v~~HD~~l~rtT~~~~~~~~~~~~y~~~G~~~~g~ 172 (811)
+|||| =|++..+..|+..||. .||+||...++|.+ ..+||...+.--+... |
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GAN--aiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~------------------~ 54 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGAN--AIEIDVTFWSNGTGWWADHDVPCDCFRGCTA------------------R 54 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCC--ceeEEEEEccCCcEEEeeCCCccccccCCcH------------------H
Confidence 46775 3999999999999999 99999999999987 6788875542101000 0
Q ss_pred cccccCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEEeeccchhhhhcCch-HHHHHHHHhhhcC
Q 003550 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLS-MRSFVLSVSRSVV 249 (811)
Q Consensus 173 ~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~leiK~~~~~~~~~~~-~~~~l~~~lk~~~ 249 (811)
-..+-=++++++++. |- ++. .-+|+++|.+.+..+.... ..+...++++.+.
T Consensus 55 ~~f~~~l~~~r~~tt------------------pg-------~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w 109 (265)
T cd08576 55 EMFDEILDYRRNGTT------------------PG-------FRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYW 109 (265)
T ss_pred HHHHHHHHHHHhcCC------------------CC-------ccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 011111222222211 11 111 3589999988876543211 1122233444443
Q ss_pred -----ce---EEecC---CHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccc
Q 003550 250 -----VN---YISSP---EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIW 318 (811)
Q Consensus 250 -----~~---~isSf---~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~ 318 (811)
.. .+|-+ +..+++.++........ +--.++.-..+-+.+.. |..+++.....+ ..++|
T Consensus 110 ~~~~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~--~~~~~~kvg~df~~n~~-------l~~~~~~~~~~~--~~h~w 178 (265)
T cd08576 110 NGGSGARALYGFSIPSITDSRFFKGIRDRLNSEEA--VSGLLDKVGKDFSGNED-------LEDIRRVYDYGG--DGHIW 178 (265)
T ss_pred cCCCCeEEEEEEEeccccchHHHHHHHHHHHhcCc--hhhHHHhhcccccCCCC-------hHHHHHHHHhcC--cCcee
Confidence 21 22222 35777777776542111 10000100001111111 223333222222 12333
Q ss_pred cCCC-ccc---CCCChHHHHHHHHcCC-----eEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcc
Q 003550 319 PVDE-SLY---LLPHTTIVLDAHKERL-----EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389 (811)
Q Consensus 319 ~~~~-~~~---l~~~~~~V~~ah~~Gl-----~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~ 389 (811)
..+- .+- ......+++.+|++|. +|++||++.. ++++++++.| |||||||+|+.+.
T Consensus 179 ~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~------------~~~~~ll~~G---VDGIITD~P~~i~ 243 (265)
T cd08576 179 QSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKG------------SSVRKLLRLG---VDGIITNYPKRII 243 (265)
T ss_pred cCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCH------------HHHHHHHhcC---CCEEEECCHHHHH
Confidence 2210 000 1234789999999999 9999999864 8999999999 9999999998877
Q ss_pred hhhhh
Q 003550 390 AAVDC 394 (811)
Q Consensus 390 ~~~~~ 394 (811)
+.++.
T Consensus 244 ~~l~~ 248 (265)
T cd08576 244 DVLKE 248 (265)
T ss_pred HHHHh
Confidence 76654
No 93
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.07 E-value=2.7e-06 Score=59.62 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=22.0
Q ss_pred cEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChH
Q 003550 660 PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 660 ~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+|+.||++++. .+..++ ++|||||+||+|+
T Consensus 1 kV~~WT~d~~~-------------~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPA-------------SWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHH-------------HHHHHH-HHT-SEEEES-HH
T ss_pred CeEEecCCCHH-------------HHHHHH-HcCCCEeeCCCCC
Confidence 58999998874 477777 9999999999995
No 94
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=97.93 E-value=3.7e-06 Score=58.97 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=23.3
Q ss_pred eEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCC
Q 003550 342 EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (811)
Q Consensus 342 ~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~ 386 (811)
+|++||++++ +.++.+++.| ||||+||+|+
T Consensus 1 kV~~WT~d~~------------~~~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKP------------ASWRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SH------------HHHHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCCH------------HHHHHHHHcC---CCEeeCCCCC
Confidence 6899998764 8999999999 9999999984
No 95
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=97.89 E-value=1.2e-05 Score=83.32 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=45.3
Q ss_pred ceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 408 plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
.+--+|+-+ .-..+|||+.||++|++.|+++||+||+-++||+|||+|+.++.
T Consensus 12 fI~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 12 WIASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred eeeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 344567643 34689999999999999999999999999999999999997653
No 96
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.72 E-value=3.8e-05 Score=79.40 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=44.8
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
+--+|+-+ .-..+|||+.||.+|++.|+++||+||+-++||+|||+|+.++.
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 13 ISSSHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred eecCcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 44567643 34678999999999999999999999999999999999997663
No 97
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=97.69 E-value=4.7e-05 Score=79.01 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~ 146 (811)
..+.+|||++||+.|+..|++ .||+||+-++||++||+||.++.
T Consensus 24 ~Ql~~ess~eay~~AL~~GcR--~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 24 DQLSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred CccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 367899999999999999999 99999999999999999999884
No 98
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=97.57 E-value=1.2e-05 Score=91.26 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=53.8
Q ss_pred ccccccceeecCCCCC-------CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcccccc
Q 003550 402 ASKSANLLVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINST 463 (811)
Q Consensus 402 ~~~~~~plIIAHRGas-------g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~rtT 463 (811)
.++++..+-++|||.. ....|||...+..|++.|||++|+|||+|||.++|++||..+...-
T Consensus 319 w~~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 319 WKKNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred hcccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEee
Confidence 4555677889999963 2467999999999999999999999999999999999998887653
No 99
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.50 E-value=0.00012 Score=75.63 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~ 146 (811)
.+.+|||++||..|+..|++ .||+||+-++||++||+||.++.
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred ccCCcccHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 56789999999999999999 99999999999999999999884
No 100
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.04 E-value=0.00053 Score=72.73 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred eeecCCCC-C--CCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA-S--GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa-s--g~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ . -..-+.|..+|++|++.|+++||+||+-++||+|||+|+.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 13 IASSHNTYLIEDQLRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred hccccCccccCCeecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 34566643 2 256788999999999999999999999999999999999765
No 101
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=96.82 E-value=0.0049 Score=59.48 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
...+.+|+..+|..++..|+. ++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR--~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCR--CVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCC--EEEEEcccCCCCCEEEEECCcc
Confidence 356789999999999999999 9999999999999999999865
No 102
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=96.82 E-value=0.00015 Score=82.32 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCC-------CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCc
Q 003550 90 DPPFVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149 (811)
Q Consensus 90 ~~plviaHRG~~-------~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT 149 (811)
+.-+-++|||.. ....|||+..+..|++.|+| ++|+|||+|||.+.|++||..+..+-
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad--~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGAD--LVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhh--HHHhhcccccCCceeeeccceeEEee
Confidence 345789999964 24579999999999999999 99999999999999999999886543
No 103
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=96.73 E-value=0.0017 Score=69.01 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|+++|+.|+..|++ .||+||+-++||++||+||.++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 25 QLRGPSSVEGYVRALQRGCR--CVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred eecCccCHHHHHHHHHhCCC--EEEEEeEcCCCCCEEEEeCCcc
Confidence 46788999999999999999 9999999999999999999987
No 104
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=96.67 E-value=0.0022 Score=61.83 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 417 SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 417 sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
...+.+|+..+|..+++.|++++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 4567899999999999999999999999999999999999643
No 105
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=94.88 E-value=0.79 Score=48.57 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=114.3
Q ss_pred CchHHHHHHHHHCCCCeeeccccccc------CCcEEEeecCccccccccCCCcCCCccccccccccCccccccCCCHHH
Q 003550 422 SCTNLAYQKAISDGVDFIDCPVQMSK------DGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (811)
Q Consensus 422 ENTl~Af~~Ai~~Gad~IE~DVqlTK------DGv~Vv~HD~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~E 495 (811)
=|+....+.|++..+.+||.||.+-+ +++||+.|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------------------------------ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------------------------------ 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------------------------------
Confidence 48889999999999999999999984 678888886321
Q ss_pred HhccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCC
Q 003550 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (811)
Q Consensus 496 Lk~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~ 575 (811)
..-.||+|+|+.+... ..||-+++|.....+ ..+++|++..-.
T Consensus 55 --------------------------~SdltLee~L~~v~~~--~kGIKLDFKs~eav~---------pSl~~L~~~~~~ 97 (244)
T PF10223_consen 55 --------------------------DSDLTLEEWLDEVLSS--RKGIKLDFKSIEAVE---------PSLDLLAKLSDK 97 (244)
T ss_pred --------------------------CCcCcHHHHHHHHhcc--CcEEEEeccCHHHHH---------HHHHHHHHHhhc
Confidence 1224667777666644 359999999765433 334444432110
Q ss_pred CCCCcEEEEE------eCCh---------HHHHHHHhc-cCceE--EEEEcc----ccchhchHhHHHHHHhhhh-hccc
Q 003550 576 KQTALKVMIQ------STDS---------SVLMKLREK-TSYEL--VYKVKE----NIRDALNQTIEDIKKFADS-VVLS 632 (811)
Q Consensus 576 ~~~~~~Viiq------Sfd~---------~~L~~lk~~-p~~~~--~~l~~~----~~~d~~~~~l~~i~~~a~~-v~~~ 632 (811)
-+..|+|- +++. .+|..+++. |+.-+ ++.... .-+.-+.+.++++...+.. -.++
T Consensus 98 --l~~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~ 175 (244)
T PF10223_consen 98 --LTRPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLP 175 (244)
T ss_pred --cCCCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCC
Confidence 01233332 2222 355566666 65432 222210 0011234556666666665 2233
Q ss_pred cceeecCCccccCCCHHHHHHH--HHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHH
Q 003550 633 KESVYPLNSAFITSATDIVQRL--QSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706 (811)
Q Consensus 633 ~~~i~p~~~~~l~~~~~~V~~~--~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~ 706 (811)
...-+|.....+..+..-+..+ +..+..+-+|+-.++.+ ..+....+.+..|.+-|..|-|+..+
T Consensus 176 Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v---------~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 176 QPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPV---------SVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred CceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCCc---------cHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 3444555443333333333333 22466778887654432 23345555567999999999997654
No 106
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=94.64 E-value=0.035 Score=57.73 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=41.4
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..||.+|+..|++.||+|++=-.||+|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 14 ASSHNTYLTGDQLLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ecccCccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 3466532 2355688999999999999999999999999999999998654
No 107
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=94.44 E-value=0.047 Score=57.68 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=42.5
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-...+.+..+|.+|+..|++.||+|++=-.||.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 13 ITSSHNTYLSGDQLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred eecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34466642 2356788999999999999999999999999999999998766
No 108
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=94.30 E-value=0.061 Score=56.23 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred ccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 406 ANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 406 ~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
.-.+.-+|+-+ .-...+.+..+|..|++.|++.||+||+=..||.|+|+|..++
T Consensus 10 ~YfI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 10 HYFIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred hhEEeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 34456677643 2245678889999999999999999999999999999998653
No 109
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=94.23 E-value=0.055 Score=57.30 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=41.9
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ ....-+.+..+|.+|+..|++.||+|++=-+||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 14 ESSHNTYLTGHQLKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 4466643 2345689999999999999999999999999999999998766
No 110
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=94.21 E-value=0.055 Score=57.10 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 14 ASSHNTYLTGDQLLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCCCccccCCcccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3466643 2345678999999999999999999999999999999998655
No 111
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=94.21 E-value=0.055 Score=57.46 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=41.7
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 14 CSSHNTYLMEDQLRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ecCCCccccCCcccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456543 2345688999999999999999999999999999999998766
No 112
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=94.20 E-value=0.053 Score=57.54 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 14 SSSHNTYLVSDQLVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred eccccccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 3455532 2345689999999999999999999999999999999998665
No 113
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=94.12 E-value=0.057 Score=56.31 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-...+.+..+|..|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 14 SSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 3456532 2356789999999999999999999999999999999998644
No 114
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=94.03 E-value=0.068 Score=55.67 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+|++=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcR--cvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 56789999999999999999 9999999999999999999877
No 115
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=93.96 E-value=0.067 Score=56.87 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=42.0
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-+||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 13 ISSSHNTYLTDSQIGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred eecccCccccCCcccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 34566542 2345678999999999999999999999999999999998655
No 116
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=93.83 E-value=0.073 Score=56.50 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 14 SSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred eccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3466543 2345688999999999999999999999999999999998655
No 117
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=93.78 E-value=0.07 Score=56.59 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=42.0
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.+..+|..|+..|++.||+|++=-.||.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 13 ISSSHNTYLTGDQLRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCcCCcccCCeeecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 44566643 1245688999999999999999999999999999999998655
No 118
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=93.70 E-value=0.1 Score=54.62 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=..||.++|.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 25 QLSSRSSTAPIIEALLRGCR--VIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred ccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCeEEEeCCCC
Confidence 45678999999999999999 9999999999999999998876
No 119
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=93.66 E-value=0.077 Score=56.45 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=41.5
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.|..+|.+|+..|++.||+|++=-.||.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 14 ASSHNTYLLEDQLKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ecccCccccCCcccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456543 2346688999999999999999999999999999999998654
No 120
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=93.48 E-value=0.096 Score=55.41 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCR--CVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 56788999999999999999 9999999999999999999888
No 121
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=93.46 E-value=0.095 Score=54.89 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=41.7
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.|..+|.+|+..|++.||+||+=-.||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 13 ISSSHNTYLLGRQLAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred eeccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34566643 2345688999999999999999999999999999999998644
No 122
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=93.25 E-value=0.1 Score=55.37 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=41.3
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
+--+|+-+ .-..-+.+..+|.+|+..|++.||+||+=-. ||.|||+|-.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 13 INSSHNTYLTGRQFGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred eecCcCccccCCcccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 34566643 2345688999999999999999999999865 889999998765
No 123
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=93.10 E-value=0.12 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 103 ~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
+.-+.|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCR--CIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCc--EEEEEeecCCCCCeEEeeCCCc
Confidence 5678899999999999999 9999999999999999999887
No 124
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=93.07 E-value=0.12 Score=54.57 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=39.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 25 QLLSQSKVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999 9999999999999999999877
No 125
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=93.05 E-value=0.12 Score=54.70 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-+||.+||.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 25 QLKGESSVELYSQVLLTGCR--CVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 55678999999999999999 9999999999999999999887
No 126
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=93.05 E-value=0.12 Score=54.96 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 25 QLVGPSDLDGYVSALRKGCR--CLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEecCCCc
Confidence 45679999999999999999 9999999999999999999877
No 127
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=93.05 E-value=0.14 Score=53.58 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~Ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 25 QLTGESSVEAYIRALLRGCR--CVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCCC
Confidence 46788999999999999999 9999999999999999998876
No 128
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=92.96 E-value=0.12 Score=54.81 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=39.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 25 QLRGQSSVEGYIRALKRGCR--CVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cccCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45678899999999999999 9999999999999999999888
No 129
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=92.95 E-value=0.12 Score=55.04 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=41.1
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCccc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLI 460 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L~ 460 (811)
--+|+-+ ....-+.|..+|.+|+..|++.||+|++=-. ||.|||+|..++.
T Consensus 14 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tlt 69 (261)
T cd08624 14 NSSHNTYLTAGQFSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT 69 (261)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCcc
Confidence 3456543 2345688999999999999999999999764 7899999997763
No 130
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=92.76 E-value=0.13 Score=54.68 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=40.3
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|.+|+..|++.||+|++=-. ||.|||+|..++
T Consensus 14 ~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 14 NSSHNTYLTAGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred ecCccccccCCccCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 3456543 2245688999999999999999999999876 689999999765
No 131
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=92.75 E-value=0.14 Score=54.56 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=39.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 25 QIGGPSSTEAYVRAFAQGCR--CVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred cccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45678999999999999999 9999999999999999999877
No 132
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=92.56 E-value=0.16 Score=54.04 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 25 QLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 46678999999999999999 9999999999999999999877
No 133
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=92.52 E-value=0.15 Score=54.27 Aligned_cols=42 Identities=21% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 25 QLKGPSSTEAYIRALKKGCR--CVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred cccCCccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 45778999999999999999 9999999999999999999877
No 134
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=92.33 E-value=0.18 Score=52.81 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.||.+||.|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 25 QLAGDSSVEGYIRALQRGCR--CVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999 9999999988999999999877
No 135
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=92.21 E-value=0.15 Score=54.24 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=40.7
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccC--CcEEEeecCcc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKD--GVPFCLSFINL 459 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKD--Gv~Vv~HD~~L 459 (811)
--+|+-+ .-..-+.+..+|..|+..|++.||+|++=-.| |.|||+|-.++
T Consensus 14 ~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 14 NSSHNTYLTGRQFGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ecccCccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 3456532 23456889999999999999999999999875 99999998665
No 136
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=92.18 E-value=0.17 Score=53.73 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-. ||.+||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 25 QFGGKSSVEMYRQVLLAGCR--CIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred cccCCccHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCC
Confidence 45778999999999999999 9999999765 889999999887
No 137
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=91.59 E-value=9.5 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHcCCCCcEEEeeeeeec------CCcEEEecCC
Q 003550 106 DSSSIAYSLTLITSAPSVILWCDVQLTK------DEAGICFPDL 143 (811)
Q Consensus 106 ENTl~A~~~A~~~g~~~~~vE~DVqlTk------Dg~~v~~HD~ 143 (811)
=||.+.++.|+...+. ++|.||.+-+ ++++|.-|..
T Consensus 11 vNsk~~L~~aL~~~~~--miEaDV~l~~~~~~~~~~~PIMahPP 52 (244)
T PF10223_consen 11 VNSKAELEEALSSDIM--MIEADVLLGGLNTGNEDGIPIMAHPP 52 (244)
T ss_pred cCCHHHHHHHhCCCCC--EEEEEEEeecccCCCCCCCceeeCCC
Confidence 4899999999988887 9999999984 7888888865
No 138
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=91.42 E-value=0.25 Score=52.76 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=40.9
Q ss_pred eeecCCCC---CCCCCCchHHHHHHHHHCCCCeeeccccccc--CCcEEEeecCcc
Q 003550 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (811)
Q Consensus 409 lIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK--DGv~Vv~HD~~L 459 (811)
+--+|+-+ ....-+.|..||..|+..|++.||+|++=-. |+.|||+|..++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 13 INSSHNTYLTAGQLTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred eecCccccccCCccCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 34566643 2356788999999999999999999999763 589999999765
No 139
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=91.40 E-value=0.23 Score=52.85 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-++|.++|..|+..|+. .||+||+=-. ||.+||.|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCc
Confidence 55678999999999999999 9999999663 789999999988
No 140
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=91.34 E-value=0.25 Score=52.62 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeec--CCcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTk--Dg~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+|++=-. ||.+||.|..++
T Consensus 25 Ql~g~ss~e~y~~aL~~GcR--cvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 25 QLAGNSSVEMYRQVLLSGCR--CVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred ccCCccCHHHHHHHHHcCCC--EEEEEeeCCCCCCCCCEEeeCCCc
Confidence 45678999999999999999 9999999776 689999999877
No 141
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=90.89 E-value=0.29 Score=52.07 Aligned_cols=42 Identities=19% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecC--CcEEEecCCCC
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKD--EAGICFPDLKL 145 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkD--g~~v~~HD~~l 145 (811)
.+.-+.|.++|..|+..|+. .||+||+=-.| |.+||+|..++
T Consensus 25 Ql~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 25 QFGGKSSVEMYRQVLLSGCR--CIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCCCCEEeeCCCC
Confidence 45678999999999999999 99999998875 99999999887
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.79 E-value=0.19 Score=59.85 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=44.0
Q ss_pred eecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 410 VISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 410 IIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
--+|+-+ -...-|.++.||.+|+++|+..||+|.+=-.||.||++|-.++.
T Consensus 321 sSSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~T 374 (1267)
T KOG1264|consen 321 SSSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTRT 374 (1267)
T ss_pred eccCcceecccccccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEecccee
Confidence 4567753 23457999999999999999999999999999999999998764
No 143
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=90.67 E-value=0.71 Score=46.47 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc--c
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (811)
Q Consensus 522 ~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~--p 599 (811)
+.+.+|.++.+.+++.++. +.+.++.- .|+.-.+.-++.|++++-. + =|.|..+..+++.|+. .
T Consensus 28 g~I~~l~~~v~~~~~~gK~--vfVHiDli------~Gl~~D~~~i~~L~~~~~~----d--GIISTk~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAGKK--VFVHIDLI------EGLSRDEAGIEYLKEYGKP----D--GIISTKSNLIKRAKKLGLL 93 (175)
T ss_dssp EECCCHHHHHHHHHHTT-E--EEEECCGE------ETB-SSHHHHHHHHHTT------S--EEEESSHHHHHHHHHTT-E
T ss_pred CcHHHHHHHHHHHHHcCCE--EEEEehhc------CCCCCCHHHHHHHHHcCCC----c--EEEeCCHHHHHHHHHcCCE
Confidence 6799999999999998754 45554421 2333335667888886533 1 4778999999999998 7
Q ss_pred CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCcccccccccC
Q 003550 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFF 678 (811)
Q Consensus 600 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~d~~ 678 (811)
.+++.|++++. +++...+......++.-.+.|. .-+.+++++++. +.++.+-++=...
T Consensus 94 tIqRiFliDS~-------al~~~~~~i~~~~PD~vEilPg------~~p~vi~~i~~~~~~PiIAGGLI~~~-------- 152 (175)
T PF04309_consen 94 TIQRIFLIDSS-------ALETGIKQIEQSKPDAVEILPG------VMPKVIKKIREETNIPIIAGGLIRTK-------- 152 (175)
T ss_dssp EEEEEE-SSHH-------HHHHHHHHHHHHT-SEEEEESC------CHHHHHCCCCCCCSS-EEEESS--SH--------
T ss_pred EEEEeeeecHH-------HHHHHHHHHhhcCCCEEEEchH------HHHHHHHHHHHhcCCCEEeecccCCH--------
Confidence 88999998763 3444444444556655556663 124677776554 6888888764332
Q ss_pred CChHHHHHHHHHhcCCCEEEeCChHHH
Q 003550 679 SDPTVEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 679 ~D~~~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
+++...+ +.|+++|.|-.++++
T Consensus 153 ----e~v~~al-~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 153 ----EDVEEAL-KAGADAVSTSNKELW 174 (175)
T ss_dssp ----HHHHHHC-CTTCEEEEE--HHHC
T ss_pred ----HHHHHHH-HcCCEEEEcCChHhc
Confidence 4688887 999999999888764
No 144
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=89.81 E-value=0.39 Score=51.27 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHHcCCCCcEEEeeeeee--cCCcEEEecCCCC
Q 003550 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (811)
Q Consensus 101 ~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlT--kDg~~v~~HD~~l 145 (811)
..+.-+.|.+||..|+..|+. .||+||+=- .|+.+||+|..++
T Consensus 24 ~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 24 GQLTGLSSVEMYRQVLLTGCR--CIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred CccCCccCHHHHHHHHHcCCC--EEEEEecCCCCCCCCCEEeeCCcc
Confidence 355779999999999999999 999999965 3589999999887
No 145
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.32 E-value=0.27 Score=58.52 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCCCCCcch
Q 003550 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151 (811)
Q Consensus 102 ~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l~rtT~~ 151 (811)
.+--|+|++||..|+.+|+. .||+|.+=-.||.+|++|..++ ||-|
T Consensus 332 QlrSESSleaYar~LrMGCR--CIELDCWdGpd~~pvIyHG~T~--TtKI 377 (1267)
T KOG1264|consen 332 QLRSESSLEAYARCLRMGCR--CIELDCWDGPDGKPVIYHGHTR--TTKI 377 (1267)
T ss_pred ccccccCHHHHHHHHHhCCe--EEEeecccCCCCCceEEeccce--eeee
Confidence 44579999999999999999 9999999999999999999987 5544
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=86.96 E-value=0.8 Score=54.46 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=45.4
Q ss_pred ccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcccc
Q 003550 406 ANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (811)
Q Consensus 406 ~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~r 461 (811)
+-.+--+|+-+ ....-+.+..+|.+|+..|++.||+|++--.+|.|||+|-.++..
T Consensus 123 hYfI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t~ 181 (598)
T PLN02230 123 HYFIFTGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLTK 181 (598)
T ss_pred hheeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCcC
Confidence 34455677742 235568899999999999999999999988889999999987754
No 147
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.70 E-value=1.3 Score=52.83 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=42.8
Q ss_pred EEEeCCC---CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 94 viaHRG~---~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
-.+|.-+ ..+..+.|.++|..|+..|+. .||+|++=-.+|.+||+|..++
T Consensus 127 ~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 127 FTGHNSYLTGNQLSSNCSELPIADALRRGVR--VVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred ecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEeccCCCCCCcEEeeCCCC
Confidence 4456542 356788999999999999999 9999999878899999999888
No 148
>PLN02228 Phosphoinositide phospholipase C
Probab=82.98 E-value=1.5 Score=51.96 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=43.1
Q ss_pred cceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCc-EEEeecCcccc
Q 003550 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (811)
Q Consensus 407 ~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv-~Vv~HD~~L~r 461 (811)
-.+--+|+-+ .-...+.+..+|.+|+..|++.||+|++=-.||. |||+|-.++..
T Consensus 115 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 173 (567)
T PLN02228 115 YFVYTGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLTS 173 (567)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcccC
Confidence 3445667643 2356688999999999999999999999766666 89999977643
No 149
>PLN02591 tryptophan synthase
Probab=82.70 E-value=11 Score=40.27 Aligned_cols=193 Identities=21% Similarity=0.287 Sum_probs=100.5
Q ss_pred CCchHHHHHHHHHCCCCeeecccccc---cCCcEEEee-cCccccccccCCCcCCCccccccccccCccccccCCCHHHH
Q 003550 421 PSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFCLS-FINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEI 496 (811)
Q Consensus 421 PENTl~Af~~Ai~~Gad~IE~DVqlT---KDGv~Vv~H-D~~L~rtT~v~~~~f~~r~~~~~~~~~~~G~~v~dlT~~EL 496 (811)
+|-|+...+...+.|||+||+-+=.| .||-.|--- ..-|. .| ..-+-.++.+
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~-----------------------~G-~~~~~~~~~~ 70 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALE-----------------------KG-TTLDSVISML 70 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHH-----------------------cC-CCHHHHHHHH
Confidence 46778878888899999999988765 244333221 11111 12 1223345555
Q ss_pred hccCccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEE-EecchhHHHhhcCccHHHHHHHHHHhcCCC
Q 003550 497 QTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLI-SIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (811)
Q Consensus 497 k~L~~~~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~I-EiK~~~~~~~~~g~~~~~~v~~~L~~~g~~ 575 (811)
++++.....|.- ....-|+-+ -..+++|++.+++.+- -|+.| ++=. + -.+.+.+..+++|+.
T Consensus 71 ~~~r~~~~~p~i-lm~Y~N~i~-----~~G~~~F~~~~~~aGv-~GviipDLP~----e------e~~~~~~~~~~~gl~ 133 (250)
T PLN02591 71 KEVAPQLSCPIV-LFTYYNPIL-----KRGIDKFMATIKEAGV-HGLVVPDLPL----E------ETEALRAEAAKNGIE 133 (250)
T ss_pred HHHhcCCCCCEE-EEecccHHH-----HhHHHHHHHHHHHcCC-CEEEeCCCCH----H------HHHHHHHHHHHcCCe
Confidence 555532222310 001112222 1367889998888742 25444 3311 1 123567777888886
Q ss_pred CCCCcEEEEEeCChH--HHHHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHH
Q 003550 576 KQTALKVMIQSTDSS--VLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQ 652 (811)
Q Consensus 576 ~~~~~~ViiqSfd~~--~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~ 652 (811)
.|.+-|.+.. -++++.+. +.+- |++... + ..+. +.. .+ ..-.++++
T Consensus 134 -----~I~lv~Ptt~~~ri~~ia~~~~gFI--Y~Vs~~-G-------------vTG~---~~~-~~------~~~~~~i~ 182 (250)
T PLN02591 134 -----LVLLTTPTTPTERMKAIAEASEGFV--YLVSST-G-------------VTGA---RAS-VS------GRVESLLQ 182 (250)
T ss_pred -----EEEEeCCCCCHHHHHHHHHhCCCcE--EEeeCC-C-------------CcCC---CcC-Cc------hhHHHHHH
Confidence 7777765554 36666655 4443 444321 0 0000 000 00 01135677
Q ss_pred HHHHc-CCcEEEE-ecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 653 RLQSF-KLPVYVE-TFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 653 ~~~~~-Gl~V~vw-tvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
++++. +++|.+- ++++.. ++.++. +.|+||+|.
T Consensus 183 ~vk~~~~~Pv~vGFGI~~~e-------------~v~~~~-~~GADGvIV 217 (250)
T PLN02591 183 ELKEVTDKPVAVGFGISKPE-------------HAKQIA-GWGADGVIV 217 (250)
T ss_pred HHHhcCCCceEEeCCCCCHH-------------HHHHHH-hcCCCEEEE
Confidence 77764 6776553 455442 466665 899999986
No 150
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=82.55 E-value=26 Score=35.15 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc--c
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (811)
Q Consensus 522 ~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~--p 599 (811)
+.+..|++....+|+.++. ++|.+..- .|+.-.+...+-+++..-.+ =|.|.-+.++...|++ .
T Consensus 32 ~~i~~ik~ivk~lK~~gK~--vfiHvDLv------~Gl~~~e~~i~fi~~~~~pd------GIISTk~~~i~~Akk~~~~ 97 (181)
T COG1954 32 GHILNIKEIVKKLKNRGKT--VFIHVDLV------EGLSNDEVAIEFIKEVIKPD------GIISTKSNVIKKAKKLGIL 97 (181)
T ss_pred chhhhHHHHHHHHHhCCcE--EEEEeHHh------cccCCchHHHHHHHHhccCC------eeEEccHHHHHHHHHcCCc
Confidence 5799999999999998654 44444311 22222233445555432221 2668888999999887 8
Q ss_pred CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCcccccccccC
Q 003550 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAWDFF 678 (811)
Q Consensus 600 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~d~~ 678 (811)
-+.+.|++++. +++.....+..+.++.--+.|. .-+.+++++.+ .+.+|.+-++=+..
T Consensus 98 aIqR~FilDS~-------Al~~~~~~i~~~~pD~iEvLPG------v~Pkvi~~i~~~t~~piIAGGLi~t~-------- 156 (181)
T COG1954 98 AIQRLFILDSI-------ALEKGIKQIEKSEPDFIEVLPG------VMPKVIKEITEKTHIPIIAGGLIETE-------- 156 (181)
T ss_pred eeeeeeeecHH-------HHHHHHHHHHHcCCCEEEEcCc------ccHHHHHHHHHhcCCCEEeccccccH--------
Confidence 88999998863 3444444444555654445553 23577777754 47888888764442
Q ss_pred CChHHHHHHHHHhcCCCEEEeCCh
Q 003550 679 SDPTVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 679 ~D~~~e~~~~l~~~GVDGIiTD~P 702 (811)
+|+...+ ++|+-.|.|-.-
T Consensus 157 ----Eev~~Al-~aGA~avSTs~~ 175 (181)
T COG1954 157 ----EEVREAL-KAGAVAVSTSNT 175 (181)
T ss_pred ----HHHHHHH-HhCcEEEeecch
Confidence 5788888 899998887544
No 151
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=82.31 E-value=1.6 Score=52.45 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred cccccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 403 SKSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 403 ~~~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
|..+-.+--+|+-+ .-..-+++..+|-.|++.|+++||+|++--.+|.|||+|-.++.
T Consensus 294 PLsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT 354 (746)
T KOG0169|consen 294 PLSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT 354 (746)
T ss_pred cchhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence 33444556788853 33456999999999999999999999999999999999998774
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=81.97 E-value=1.7 Score=51.89 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=44.2
Q ss_pred cccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCC-cEEEeecCcccc
Q 003550 405 SANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG-VPFCLSFINLIN 461 (811)
Q Consensus 405 ~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDG-v~Vv~HD~~L~r 461 (811)
..-.+--+|+-+ .-...+.|..+|.+|+..|++.||+|++=-.|| .|||+|-.++..
T Consensus 130 s~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 190 (599)
T PLN02952 130 SHYFIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLTT 190 (599)
T ss_pred hhheeeccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcccc
Confidence 334455677743 345668999999999999999999999977765 489999977753
No 153
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=81.10 E-value=3.5 Score=46.33 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCCCcccCCCChHHHHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~a 336 (811)
++-|+++++..| ++++.-++-+.+.+.. +.|.+-.-. .++++ +-.|+.+-+-+-.-.|..| =..-++.+
T Consensus 65 WeRLr~lk~~~~--nT~LQMLlRGQNlvGY---rhyaDDvVe-~Fv~ka~~nGidvfRiFDAlND~RN----l~~ai~a~ 134 (472)
T COG5016 65 WERLRELKKAVP--NTKLQMLLRGQNLVGY---RHYADDVVE-KFVEKAAENGIDVFRIFDALNDVRN----LKTAIKAA 134 (472)
T ss_pred HHHHHHHHHhCC--CcHHHHHHccCccccc---cCCchHHHH-HHHHHHHhcCCcEEEechhccchhH----HHHHHHHH
Confidence 577999999998 7787655555555432 345443221 33433 3456654332211111111 13468899
Q ss_pred HHcCCeEEE---EecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccC------CCCcchhhhhhhccCCCcccccc
Q 003550 337 HKERLEVFA---SNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF------PLTPSAAVDCFAHLGKNASKSAN 407 (811)
Q Consensus 337 h~~Gl~V~~---Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~------P~~a~~~~~~~~~~~~~~~~~~~ 407 (811)
++.|.++.+ +|..- .-..+|+ .+-.+++.+.| ||.|.--. |..+-+.+++....- .-+
T Consensus 135 kk~G~h~q~~i~YT~sP--vHt~e~y---v~~akel~~~g---~DSIciKDmaGlltP~~ayelVk~iK~~~-----~~p 201 (472)
T COG5016 135 KKHGAHVQGTISYTTSP--VHTLEYY---VELAKELLEMG---VDSICIKDMAGLLTPYEAYELVKAIKKEL-----PVP 201 (472)
T ss_pred HhcCceeEEEEEeccCC--cccHHHH---HHHHHHHHHcC---CCEEEeecccccCChHHHHHHHHHHHHhc-----CCe
Confidence 999998754 44322 2222232 34456688888 99986432 443434443332210 012
Q ss_pred ceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccc
Q 003550 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (811)
Q Consensus 408 plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVq 444 (811)
..+-.|- .+|. +..+|.+|++.|+|+|++-+-
T Consensus 202 v~lHtH~-TsG~----a~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 202 VELHTHA-TSGM----AEMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred eEEeccc-ccch----HHHHHHHHHHhCcchhhhhhc
Confidence 2233332 2343 458899999999999877554
No 154
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=80.20 E-value=13 Score=39.80 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=101.5
Q ss_pred HHHHHhhhcCceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHh-hhH-HHHHhhcccccCCCccc
Q 003550 240 FVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL-KNL-TFIKTFASGILVPKDYI 317 (811)
Q Consensus 240 ~l~~~lk~~~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~-~~L-~~i~~~a~gi~~~~~~i 317 (811)
.+++.+-+.+.+.+++ ..+.++.+.+.... +.+++..+-..+.+.+.. |.... ... +.++--++++.+.- |+
T Consensus 47 ~~v~~v~~~g~dav~~-~~G~~~~~~~~y~~-dvplivkl~~~t~l~~~~---~~~~~~~~ve~ai~lgadAV~~~V-y~ 120 (265)
T COG1830 47 NIVAKVAEAGADAVAM-TPGIARSVHRGYAH-DVPLIVKLNGSTSLSPDP---NDQVLVATVEDAIRLGADAVGATV-YV 120 (265)
T ss_pred HHHHHHHhcCCCEEEe-cHhHHhhcCccccC-CcCEEEEeccccccCCCc---ccceeeeeHHHHHhCCCcEEEEEE-ec
Confidence 4555555666665533 67888888876643 567776555544333322 32221 122 22333344443321 11
Q ss_pred ccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCCh--HHHH-HHHHHcCCCccCeEeccCCCCcchhhhh
Q 003550 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP--LTEY-LSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (811)
Q Consensus 318 ~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~--~~e~-~~~i~~G~~~VDgIiTD~P~~a~~~~~~ 394 (811)
-.......+..-.+++++||+.|+.+.+|.-........+|-.|+ .... +--...| .|-|=|+||.-...+.
T Consensus 121 Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG---ADIiK~~ytg~~e~F~-- 195 (265)
T COG1830 121 GSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG---ADIIKTKYTGDPESFR-- 195 (265)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc---CCeEeecCCCChHHHH--
Confidence 111111223233578999999999999998754322222233444 1111 2345667 9999999997542222
Q ss_pred hhccCCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCee
Q 003550 395 FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (811)
Q Consensus 395 ~~~~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~I 439 (811)
....- -+-|+||+ .|.++.-++..+.--..|++.||.++
T Consensus 196 --~vv~~---~~vpVvia-GG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 196 --RVVAA---CGVPVVIA-GGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred --HHHHh---CCCCEEEe-CCCCCCChHHHHHHHHHHHHccCcch
Confidence 22110 12466664 34555578899999999999999775
No 155
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.47 E-value=5.5 Score=47.91 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=10.5
Q ss_pred CCEEEeCChHHHHHHHH
Q 003550 694 IDGVITEFPMTAARYRR 710 (811)
Q Consensus 694 VDGIiTD~P~~~~~~~~ 710 (811)
.|--.||+=+...+..+
T Consensus 483 ~~ke~ta~qe~qael~k 499 (1102)
T KOG1924|consen 483 FDKELTARQEAQAELQK 499 (1102)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 45556777776666543
No 156
>PLN02228 Phosphoinositide phospholipase C
Probab=77.29 E-value=2.6 Score=49.94 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred EEEeCCC---CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCc-EEEecCCCC
Q 003550 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (811)
Q Consensus 94 viaHRG~---~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~-~v~~HD~~l 145 (811)
-.+|.-+ ..+..++|.++|..|+..|+. .||+|++=-.||. +||+|..++
T Consensus 118 ~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 118 YTGHNSYLTGNQVNSRSSVEPIVQALRKGVK--VIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred ecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCEEEeCCcc
Confidence 3456543 356789999999999999999 9999999666665 799999887
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=76.70 E-value=2.9 Score=49.00 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=39.9
Q ss_pred ccceeecCCCC-CC--CCCC-chHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 406 ANLLVISKNGA-SG--DYPS-CTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 406 ~~plIIAHRGa-sg--~~PE-NTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
.-.+--+|+-+ .| ..-+ +|..+|.+|+..|+++||+|++--.++.+++.|-.++.
T Consensus 114 hYfI~SSHNTYL~g~Ql~~~~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt 172 (537)
T PLN02223 114 HYFIHTSLKSYFTGNNVFGKLYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE 172 (537)
T ss_pred hheeeccccccccCCcccCCcccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence 33445667643 12 2344 99999999999999999999995445556788987653
No 158
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.49 E-value=3.4 Score=49.17 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=43.3
Q ss_pred cccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeecccccccCCc-EEEeecCcccc
Q 003550 405 SANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (811)
Q Consensus 405 ~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv-~Vv~HD~~L~r 461 (811)
..-.+--+|+-+ .-...+.|..+|.+|+..|++.||+|++=-.||. ++|+|-.+|..
T Consensus 110 s~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt~ 170 (581)
T PLN02222 110 SHYFIFTGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLTT 170 (581)
T ss_pred hhheeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcccC
Confidence 334455677742 3346688999999999999999999999766665 57999877643
No 159
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=74.73 E-value=3.6 Score=44.57 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 420 ~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+-.+...+|..+++.|++++|+||+-.+|+.++++|-..+
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 3589999999999999999999999999999999998644
No 160
>PLN02952 phosphoinositide phospholipase C
Probab=74.21 E-value=3.7 Score=49.01 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=40.9
Q ss_pred EEEeCCC---CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCc-EEEecCCCC
Q 003550 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (811)
Q Consensus 94 viaHRG~---~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~-~v~~HD~~l 145 (811)
-.+|.-+ ..+..+.|.++|..|+..|+. .||+|++=-.||. +||+|..++
T Consensus 135 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 135 YTGHNSYLTGNQLSSDCSEVPIVKALQRGVR--VIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred eccccccccCCccCCcCCHHHHHHHHHcCCc--EEEEEeecCCCCCCCEEEeCCcc
Confidence 4456642 456789999999999999999 9999999766653 799999887
No 161
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=73.44 E-value=56 Score=35.11 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=81.3
Q ss_pred ccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccc---cCCcEEEe-ecCccccccccCCCcCCCccccccccc
Q 003550 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFCL-SFINLINSTNAAQSKFNSITTTIPEIM 481 (811)
Q Consensus 406 ~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlT---KDGv~Vv~-HD~~L~rtT~v~~~~f~~r~~~~~~~~ 481 (811)
+++..|.|==+..--.|-|........+.|||+||+-+=.| .||-.|-. |..-|
T Consensus 10 ~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL---------------------- 67 (258)
T PRK13111 10 GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRAL---------------------- 67 (258)
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHH----------------------
Confidence 34455555321111247788888888899999999987764 24433221 11111
Q ss_pred cCccccccCCCHHHHhccCcc-ccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCcc
Q 003550 482 AGSGIFSFSLIWDEIQTLIPQ-ISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS 560 (811)
Q Consensus 482 ~~~G~~v~dlT~~ELk~L~~~-~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~ 560 (811)
..| ...+-.++.+++++.. ...|.- -...-|+-+ -..+++|++.+++.+- -|+.|- ..+- +
T Consensus 68 -~~G-~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N~i~-----~~G~e~f~~~~~~aGv-dGviip-DLp~--------e 129 (258)
T PRK13111 68 -AAG-VTLADVFELVREIREKDPTIPIV-LMTYYNPIF-----QYGVERFAADAAEAGV-DGLIIP-DLPP--------E 129 (258)
T ss_pred -HcC-CCHHHHHHHHHHHHhcCCCCCEE-EEecccHHh-----hcCHHHHHHHHHHcCC-cEEEEC-CCCH--------H
Confidence 122 2223345666665522 122210 000112222 1357899999998742 365551 1111 1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCh--HHHHHHHhc-cCc
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDS--SVLMKLREK-TSY 601 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~--~~L~~lk~~-p~~ 601 (811)
-.+.+.+.++++|+. .|.+.|.+. +-++.+.+. +.+
T Consensus 130 e~~~~~~~~~~~gl~-----~I~lvap~t~~eri~~i~~~s~gf 168 (258)
T PRK13111 130 EAEELRAAAKKHGLD-----LIFLVAPTTTDERLKKIASHASGF 168 (258)
T ss_pred HHHHHHHHHHHcCCc-----EEEEeCCCCCHHHHHHHHHhCCCc
Confidence 234677888889987 788777666 566766666 554
No 162
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=72.68 E-value=11 Score=38.17 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcC-CCEEEeCChHHHHHHHHhc
Q 003550 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG-IDGVITEFPMTAARYRRNR 712 (811)
Q Consensus 646 ~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~G-VDGIiTD~P~~~~~~~~~~ 712 (811)
.-+++|+++|++|..|++..--=+ -+..|+ .-.+|+.+.+ +|||||=.+..++..++..
T Consensus 32 ~l~~~v~~~~~~gK~vfVHiDli~------Gl~~D~--~~i~~L~~~~~~dGIISTk~~~i~~Ak~~g 91 (175)
T PF04309_consen 32 NLKDIVKRLKAAGKKVFVHIDLIE------GLSRDE--AGIEYLKEYGKPDGIISTKSNLIKRAKKLG 91 (175)
T ss_dssp CHHHHHHHHHHTT-EEEEECCGEE------TB-SSH--HHHHHHHHTT--SEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCEEEEEehhcC------CCCCCH--HHHHHHHHcCCCcEEEeCCHHHHHHHHHcC
Confidence 346899999999999998841111 122332 3566776766 9999999999999887653
No 163
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=72.54 E-value=3.8 Score=39.78 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcc
Q 003550 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (811)
Q Consensus 420 ~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L 459 (811)
+..|...++..+++.|++++|++|+..+++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 4678899999999999999999999999999999997443
No 164
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=72.02 E-value=37 Score=36.43 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccccccc---CCcEE-EeecCccccccccCCCcCCCccccccc
Q 003550 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSK---DGVPF-CLSFINLINSTNAAQSKFNSITTTIPE 479 (811)
Q Consensus 404 ~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTK---DGv~V-v~HD~~L~rtT~v~~~~f~~r~~~~~~ 479 (811)
.++++..|+|==+..--+|-|....+...+.|||+||+-|=.|- ||-.| --|...|..-++++.
T Consensus 6 ~~~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~------------ 73 (256)
T TIGR00262 6 QRGEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEK------------ 73 (256)
T ss_pred hcCCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHH------------
Q ss_pred cccCccccccCCCHHHHhccCcc-ccCCcccccccCCcCCCCCCCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcC
Q 003550 480 IMAGSGIFSFSLIWDEIQTLIPQ-ISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQG 558 (811)
Q Consensus 480 ~~~~~G~~v~dlT~~ELk~L~~~-~~~p~~~~~~~rn~~~~~~~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g 558 (811)
.++.+++++.. ...|.- .-...|+-+.. -++++++.+++.+-. |+.|--.......
T Consensus 74 ------------~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~-----G~e~f~~~~~~aGvd-gviipDlp~ee~~---- 130 (256)
T TIGR00262 74 ------------CFELLKKVRQKHPNIPIG-LLTYYNLIFRK-----GVEEFYAKCKEVGVD-GVLVADLPLEESG---- 130 (256)
T ss_pred ------------HHHHHHHHHhcCCCCCEE-EEEeccHHhhh-----hHHHHHHHHHHcCCC-EEEECCCChHHHH----
Q ss_pred ccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cCce-EEEEEccccchhchHhHHHHHHhhhhhcccccee
Q 003550 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYE-LVYKVKENIRDALNQTIEDIKKFADSVVLSKESV 636 (811)
Q Consensus 559 ~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~~~-~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i 636 (811)
.+++.++++|+. .+++.+.+... .+++.. .... .+|++.. ..+
T Consensus 131 -----~~~~~~~~~gl~-----~i~lv~P~T~~-eri~~i~~~~~gfiy~vs~------------------------~G~ 175 (256)
T TIGR00262 131 -----DLVEAAKKHGVK-----PIFLVAPNADD-ERLKQIAEKSQGFVYLVSR------------------------AGV 175 (256)
T ss_pred -----HHHHHHHHCCCc-----EEEEECCCCCH-HHHHHHHHhCCCCEEEEEC------------------------CCC
Q ss_pred ecCCccccCCCHHHHHHHHHc-CCcEEEE-ecCCcccccccccCCChHHHHHHHHHhcCCCEEE
Q 003550 637 YPLNSAFITSATDIVQRLQSF-KLPVYVE-TFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVI 698 (811)
Q Consensus 637 ~p~~~~~l~~~~~~V~~~~~~-Gl~V~vw-tvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIi 698 (811)
.-....+.....+.++++++. +.+|.+- ++++.. ++.... ++|+|||+
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e-------------~~~~~~-~~GADgvV 225 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAYSAKPVLVGFGISKPE-------------QVKQAI-DAGADGVI 225 (256)
T ss_pred CCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHH-------------HHHHHH-HcCCCEEE
No 165
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=70.87 E-value=3.8 Score=49.30 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 103 ~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
+.-+.|+++|-.|++.|+. .||+|++=-.+|.+||.|-.++
T Consensus 313 l~g~sSvegyI~ALk~GcR--~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 313 LGGPSSVEGYIRALKKGCR--CVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred cCCccccHHHHHHHHhCCe--EEEEecccCCCCCeeEecCccc
Confidence 3469999999999999999 9999999999999999999988
No 166
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=69.70 E-value=21 Score=38.94 Aligned_cols=136 Identities=26% Similarity=0.366 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH----Hhc----cCc--eEEEEEccc-cchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TSY--ELVYKVKEN-IRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l----k~~----p~~--~~~~l~~~~-~~d~~~~~l~~i~~~a~~v 629 (811)
.+.++.+.|.+.|+. .|.|.|+.......+ |.. |++ +..|.++.. .+.+..+...++..-|+.+
T Consensus 176 rV~aIR~aLd~ag~~-----~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~l 250 (330)
T COG0113 176 RVGAIREALDEAGFI-----DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADIL 250 (330)
T ss_pred hHHHHHHHHHHcCCC-----cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEE
Confidence 678899999999997 788999887776654 332 222 445555442 1112222233444555544
Q ss_pred ccccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCccccccc---ccCCChH---HHHHHHHHhcCCCEEEeCCh
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAW---DFFSDPT---VEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~---d~~~D~~---~e~~~~l~~~GVDGIiTD~P 702 (811)
-+ -|. -.|| ++|.++++. ++++.+|-|..|..++-. +=|-|.. -|...-++.+|.|+|||=|-
T Consensus 251 MV-----KPa-l~YL----DIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA 320 (330)
T COG0113 251 MV-----KPA-LPYL----DIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFA 320 (330)
T ss_pred EE-----cCC-chHH----HHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecH
Confidence 33 232 1233 778887765 899999999888543221 1122332 23333346899999999999
Q ss_pred HHHHHHHHh
Q 003550 703 MTAARYRRN 711 (811)
Q Consensus 703 ~~~~~~~~~ 711 (811)
..+.+++++
T Consensus 321 ~e~a~~L~~ 329 (330)
T COG0113 321 KEVAEWLKE 329 (330)
T ss_pred HHHHHHhhc
Confidence 999998864
No 167
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.09 E-value=25 Score=37.32 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHCCCCeeeccccc
Q 003550 422 SCTNLAYQKAISDGVDFIDCPVQM 445 (811)
Q Consensus 422 ENTl~Af~~Ai~~Gad~IE~DVql 445 (811)
|++....+...+.|||+||+|+-.
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPf 37 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPF 37 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 566666777778899999999744
No 168
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=67.97 E-value=9.9 Score=45.87 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCC
Q 003550 742 PPAEAPNPILTEAAV 756 (811)
Q Consensus 742 ~p~~~p~~~~~~~~~ 756 (811)
||+++|.|+|...-=
T Consensus 541 ~pppPppPPlpggag 555 (1102)
T KOG1924|consen 541 PPPPPPPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCCCCCCC
Confidence 444445555554433
No 169
>PLN02222 phosphoinositide phospholipase C 2
Probab=67.46 E-value=6 Score=47.13 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=40.1
Q ss_pred EEEeCCC---CCCCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCc-EEEecCCCC
Q 003550 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (811)
Q Consensus 94 viaHRG~---~~~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~-~v~~HD~~l 145 (811)
-.+|.-+ ..+..+.|.++|..|+..|+. .||+|++=-.||. ++|+|..++
T Consensus 115 ~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~~~v~HG~tl 168 (581)
T PLN02222 115 FTGHNSYLTGNQLSSDCSEVPIIDALKKGVR--VIELDIWPNSDKDDIDVLHGMTL 168 (581)
T ss_pred ecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCeEeeCCcc
Confidence 4456542 356788999999999999999 9999999766665 479998877
No 170
>PLN02223 phosphoinositide phospholipase C
Probab=64.62 E-value=7.4 Score=45.79 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred CCCc-hHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 103 IFPD-SSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 103 ~~PE-NTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
+.-+ .|.++|..|+..|+. .||+|++=-.++.+++.|-.++
T Consensus 130 l~~~~ss~e~y~~aL~~GcR--cvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 130 VFGKLYSIEPIIDALEQGVR--VVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred ccCCcccHHHHHHHHHcCCc--EEEEEecCCCCCCCeEeeCCce
Confidence 4555 999999999999999 9999999544455678898877
No 171
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=63.58 E-value=19 Score=34.81 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=32.0
Q ss_pred CCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 104 ~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
+..+...++..+++.|+. ++++||+..+++.+++.|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR--~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIR--YLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT----EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCc--eEEEEEEcCCCCceEEEeCCEe
Confidence 467888999999999999 9999999999999999996543
No 172
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=62.27 E-value=38 Score=36.64 Aligned_cols=129 Identities=15% Similarity=0.218 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEE----EEeCChHHHHHHHh
Q 003550 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM----IQSTDSSVLMKLRE 597 (811)
Q Consensus 522 ~~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~Vi----iqSfd~~~L~~lk~ 597 (811)
..+-.|.|..+.+-.....+|+.|-...+. +.+.|+++|.++.-. -.|+ +||-+...++.+.+
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgTRPDC---------lpd~VldlL~e~~~r----~~vWvELGLQT~h~~Tlk~iNR 163 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGTRPDC---------LPDDVLDLLAEYNKR----YEVWVELGLQTAHDKTLKRINR 163 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecCCCCC---------CcHHHHHHHHHHhhh----eEEEEEeccchhhHHHHHHHhc
Confidence 467788999988877766788888887655 334677777665321 1222 45666666655554
Q ss_pred ccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCccccccccc
Q 003550 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDF 677 (811)
Q Consensus 598 ~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~ 677 (811)
.-+ .+. -.+-|++++++|++|.+..++.- |+.=
T Consensus 164 gHd---------------------~~~----------------------y~dav~r~rkrgIkvc~HiI~GL----PgE~ 196 (312)
T COG1242 164 GHD---------------------FAC----------------------YVDAVKRLRKRGIKVCTHLINGL----PGET 196 (312)
T ss_pred ccc---------------------hHH----------------------HHHHHHHHHHcCCeEEEEEeeCC----CCCC
Confidence 100 000 12578899999999999988754 4433
Q ss_pred CCChHHHHHHHHHhcCCCEE------EeCChHHHHHHHHh
Q 003550 678 FSDPTVEINTYYEGAGIDGV------ITEFPMTAARYRRN 711 (811)
Q Consensus 678 ~~D~~~e~~~~l~~~GVDGI------iTD~P~~~~~~~~~ 711 (811)
..|-.+.+. .+...||||| +----.....|.+.
T Consensus 197 ~~~mleTak-~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G 235 (312)
T COG1242 197 RDEMLETAK-IVAELGVDGIKLHPLHVVKGTPMEKMYEKG 235 (312)
T ss_pred HHHHHHHHH-HHHhcCCceEEEEEEEEecCChHHHHHHcC
Confidence 333333333 4558999998 33444455555543
No 173
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=60.93 E-value=60 Score=34.68 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..+|+.+|+.|+.|.+.+|.++. ...+++++|||.+.-.+
T Consensus 196 ~~iv~la~~l~~~vvaEGVEt~~--------------ql~~L~~~G~~~~QGyl 235 (256)
T COG2200 196 RAIVALAHKLGLTVVAEGVETEE--------------QLDLLRELGCDYLQGYL 235 (256)
T ss_pred HHHHHHHHHCCCEEEEeecCCHH--------------HHHHHHHcCCCeEeecc
Confidence 57899999999999999998884 55566699999887654
No 174
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=59.87 E-value=45 Score=34.92 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=55.2
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHH-HHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE-YLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e-~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~p 408 (811)
.++++.+|+.|+++.++......-..-.-+-+-... .+...+.| +|.|-+.++.... .++..... -+.|
T Consensus 112 ~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~G---aD~Ik~~~~~~~~-~~~~i~~~------~~~p 181 (235)
T cd00958 112 ARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELG---ADIVKTKYTGDAE-SFKEVVEG------CPVP 181 (235)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHC---CCEEEecCCCCHH-HHHHHHhc------CCCC
Confidence 467788899999999977431100000000011222 34478889 9999998765322 22211111 1234
Q ss_pred eeecCCCC-CCCCCCchHHHHHHHHHCCCCeee
Q 003550 409 LVISKNGA-SGDYPSCTNLAYQKAISDGVDFID 440 (811)
Q Consensus 409 lIIAHRGa-sg~~PENTl~Af~~Ai~~Gad~IE 440 (811)
++++ |+ ...-++-++.-.+.+++.||++|=
T Consensus 182 vv~~--GG~~~~~~~~~l~~~~~~~~~Ga~gv~ 212 (235)
T cd00958 182 VVIA--GGPKKDSEEEFLKMVYDAMEAGAAGVA 212 (235)
T ss_pred EEEe--CCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 4544 33 223456667778888899998763
No 175
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=59.13 E-value=14 Score=40.07 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=36.8
Q ss_pred CCCchHHHHHHHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 103 ~~PENTl~A~~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
.+..++..+|..++..|+. ++|+||+-.+|+.++++|...+
T Consensus 31 ~~~~tq~~~~~~qL~~G~R--~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 31 VWGLTQTEMYRQQLLSGCR--CVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred ccCcCcHHHHHHHHHcCCc--EEEEEeecCCCCCeEEEECCcc
Confidence 3457899999999999999 9999999999999999997654
No 176
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=54.21 E-value=24 Score=37.74 Aligned_cols=44 Identities=27% Similarity=0.251 Sum_probs=35.5
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEe---ccCCCCc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVL---SDFPLTP 388 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIi---TD~P~~a 388 (811)
..+++.||+.|++|.|.+|.++ ++...+.+.| ||.+. -..|...
T Consensus 196 ~~iv~la~~l~~~vvaEGVEt~------------~ql~~L~~~G---~~~~QGylf~~P~~~ 242 (256)
T COG2200 196 RAIVALAHKLGLTVVAEGVETE------------EQLDLLRELG---CDYLQGYLFSRPLPA 242 (256)
T ss_pred HHHHHHHHHCCCEEEEeecCCH------------HHHHHHHHcC---CCeEeeccccCCCCH
Confidence 4699999999999999999875 8889999999 76554 4445443
No 177
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=51.90 E-value=45 Score=36.55 Aligned_cols=133 Identities=30% Similarity=0.423 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH----Hhc----cCc--eEEEEEccc-cchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TSY--ELVYKVKEN-IRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l----k~~----p~~--~~~~l~~~~-~~d~~~~~l~~i~~~a~~v 629 (811)
-+.++.+.|.+.|+. .|-|.|+.......| |.. |.+ +..|.++.. .+.+-.+...++..-|+.+
T Consensus 163 rV~aIR~aLd~~g~~-----~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~l 237 (314)
T cd00384 163 RVAAIREALDEAGFS-----DVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADIL 237 (314)
T ss_pred HHHHHHHHHHHCCCC-----CCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEE
Confidence 577899999999997 578888877666553 443 321 344444432 1112223334445555544
Q ss_pred ccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCccccccc---ccCCCh---HHHHHHHHHhcCCCEEEeCCh
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAW---DFFSDP---TVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~---d~~~D~---~~e~~~~l~~~GVDGIiTD~P 702 (811)
-+ -|. -.|| ++++++++ .+++|.+|-|..|..++-. .=|-|. .-|...-++.+|.|+|||=|-
T Consensus 238 MV-----KPa-l~YL----DIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA 307 (314)
T cd00384 238 MV-----KPA-LAYL----DIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFA 307 (314)
T ss_pred EE-----cCC-chHH----HHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecH
Confidence 33 232 1233 78999987 5999999999988543321 112232 234444456899999999998
Q ss_pred HHHHHH
Q 003550 703 MTAARY 708 (811)
Q Consensus 703 ~~~~~~ 708 (811)
..+.++
T Consensus 308 ~~~a~~ 313 (314)
T cd00384 308 KDAARW 313 (314)
T ss_pred HHHHhh
Confidence 877765
No 178
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=51.67 E-value=48 Score=36.50 Aligned_cols=134 Identities=26% Similarity=0.396 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH----Hhc----cCc--eEEEEEccc-cchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TSY--ELVYKVKEN-IRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l----k~~----p~~--~~~~l~~~~-~~d~~~~~l~~i~~~a~~v 629 (811)
-+.++.+.|.+.|+. .|-|.|+.......| |.. |.+ +..|.++.. -+.+-.+...++...|+.+
T Consensus 168 rV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~l 242 (320)
T cd04823 168 RIGAIREALDAEGFT-----NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMV 242 (320)
T ss_pred HHHHHHHHHHHCCCC-----CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEE
Confidence 567888999999997 578888877666554 443 321 344444432 1112223344455556554
Q ss_pred ccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCccccccc---ccCCCh---HHHHHHHHHhcCCCEEEeCCh
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAW---DFFSDP---TVEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~---d~~~D~---~~e~~~~l~~~GVDGIiTD~P 702 (811)
-+ -|. -.| -++++++++ .+++|.+|-|..|..++-. .=|-|. .-|...-++.+|.|.|||=|-
T Consensus 243 MV-----KPa-l~Y----LDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A 312 (320)
T cd04823 243 MV-----KPG-MPY----LDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFA 312 (320)
T ss_pred EE-----cCC-chH----HHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccH
Confidence 33 232 112 378888866 6999999999988643321 112232 234444456899999999999
Q ss_pred HHHHHHH
Q 003550 703 MTAARYR 709 (811)
Q Consensus 703 ~~~~~~~ 709 (811)
..+.+++
T Consensus 313 ~~~a~wl 319 (320)
T cd04823 313 KEAAEWL 319 (320)
T ss_pred HHHHHhh
Confidence 9888876
No 179
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=51.63 E-value=19 Score=44.26 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=57.3
Q ss_pred HHcCCCccCeEecc-----CCCCcchhhhhhhccCCCccccccceeecCCCC---CCCCCCchHHHHHHHHHCCCCeeec
Q 003550 370 IDNGDFSVDGVLSD-----FPLTPSAAVDCFAHLGKNASKSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDC 441 (811)
Q Consensus 370 i~~G~~~VDgIiTD-----~P~~a~~~~~~~~~~~~~~~~~~~plIIAHRGa---sg~~PENTl~Af~~Ai~~Gad~IE~ 441 (811)
...|+.+.||.+.+ .|..+.+.+....-. ..+..+-.+--+|+-+ ....--.+.+-|++++-.|+++||+
T Consensus 283 a~~gqms~dgf~ryl~gdEn~i~a~~~l~l~~dM--~qPl~hYFINSSHNTYlTg~Ql~g~sSvEmYRQvLLsGcRCVEL 360 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMGDENAIVALDKLDLVTDM--DQPLSHYFINSSHNTYLTGGQLGGKSSVEMYRQVLLSGCRCVEL 360 (1189)
T ss_pred hhccccchhhhHHHhhCCccccccHHHHHhhhhh--ccchhhhhccccccceeecccccCcchHHHHHHHHHhcCceEEe
Confidence 34577778887654 355555554433221 1222333445566643 1122334889999999999999999
Q ss_pred cccc--ccCCcEEEeecCccc
Q 003550 442 PVQM--SKDGVPFCLSFINLI 460 (811)
Q Consensus 442 DVql--TKDGv~Vv~HD~~L~ 460 (811)
|++= ++|+.|||.|-.+.-
T Consensus 361 DcWdgk~~d~EPvITHG~tm~ 381 (1189)
T KOG1265|consen 361 DCWDGKGEDEEPVITHGFTMT 381 (1189)
T ss_pred eeecCCCCCCCceeecccchh
Confidence 9985 568999999997653
No 180
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=49.66 E-value=18 Score=38.72 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHcCCcEEEEec-CCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 646 SATDIVQRLQSFKLPVYVETF-SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 646 ~~~~~V~~~~~~Gl~V~vwtv-nne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
.-.++++++|+.|+++..|.. ++...-..+++..|-+....+.-.++|.|.|=|+||.--..|.
T Consensus 131 ~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~ 195 (265)
T COG1830 131 NISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFR 195 (265)
T ss_pred HHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHH
Confidence 345789999999999999854 3332211123444445555666668999999999996444443
No 181
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=48.83 E-value=86 Score=35.17 Aligned_cols=191 Identities=12% Similarity=0.063 Sum_probs=94.3
Q ss_pred HHHHHHhhhcCceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCcc-CCCcccchHHHhhhHHH-HHhhcccccCCCcc
Q 003550 239 SFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGSLLKNLTF-IKTFASGILVPKDY 316 (811)
Q Consensus 239 ~~l~~~lk~~~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~-~~~~~~~y~~l~~~L~~-i~~~a~gi~~~~~~ 316 (811)
+.+++.+.+.+.+-+.. ..+.++........ +.+++..+-..... .+. ..+..+....+. ++--|+++++.-.
T Consensus 94 ~~~i~~a~~~g~dAv~~-~~G~l~~~~~~~~~-~iplIlkln~~t~l~~~~--~~~~~l~~sVedAlrLGAdAV~~tvy- 168 (348)
T PRK09250 94 ENIVKLAIEAGCNAVAS-TLGVLEAVARKYAH-KIPFILKLNHNELLSYPN--TYDQALTASVEDALRLGAVAVGATIY- 168 (348)
T ss_pred HHHHHHHHhcCCCEEEe-CHHHHHhccccccC-CCCEEEEeCCCCCCCCCC--CCcccceecHHHHHHCCCCEEEEEEe-
Confidence 34666666666653322 37777774433322 56777655443222 111 112223333333 3334666654211
Q ss_pred cccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCC--CcccCCCCCh---HHHHHHHHHcCCCccCeEeccCCCCcchh
Q 003550 317 IWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDI--PISFNYSYDP---LTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (811)
Q Consensus 317 i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~--~~~~~~~~D~---~~e~~~~i~~G~~~VDgIiTD~P~~a~~~ 391 (811)
+=.......+..-..++++||+.|+.+.+|....-. ....+|.-+| .--.+-....| +|-|=|++|.....+
T Consensus 169 ~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG---ADIVKv~yp~~~~~f 245 (348)
T PRK09250 169 FGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG---ADIIKQKLPTNNGGY 245 (348)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc---CCEEEecCCCChhhH
Confidence 100001112222256889999999999999875431 1112222233 11223456777 999999999754332
Q ss_pred hhh---------hhccC------------CCccccccceeecCCCCCCCCCCchHHHHHHH---HHCCCCee
Q 003550 392 VDC---------FAHLG------------KNASKSANLLVISKNGASGDYPSCTNLAYQKA---ISDGVDFI 439 (811)
Q Consensus 392 ~~~---------~~~~~------------~~~~~~~~plIIAHRGasg~~PENTl~Af~~A---i~~Gad~I 439 (811)
.+- +..+. .+.-..+.|+|++ |++..-.+..+..-+.| ++.||.++
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviA--GG~k~~~~e~L~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 246 KAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINS--GGASKGEDDLLDAVRTAVINKRAGGMGL 315 (348)
T ss_pred HHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEe--CCCCCCHHHHHHHHHHHHHhhhcCCcch
Confidence 221 00000 0000113456665 43333345567777778 88888765
No 182
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=48.71 E-value=56 Score=36.03 Aligned_cols=134 Identities=29% Similarity=0.442 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH----Hhc----cCc--eEEEEEccc-cchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TSY--ELVYKVKEN-IRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l----k~~----p~~--~~~~l~~~~-~~d~~~~~l~~i~~~a~~v 629 (811)
-+.++.+.|.+.|+. .|-|-|+.......| |.. |.+ +..|.++.. .+.+-.+...++..-|+.+
T Consensus 171 rV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~l 245 (323)
T PRK09283 171 RVGAIREALDEAGFT-----DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMV 245 (323)
T ss_pred HHHHHHHHHHHCCCC-----CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEE
Confidence 577899999999997 578888776666554 443 321 334444332 1122223344455555544
Q ss_pred ccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCccccccc---ccCCChH---HHHHHHHHhcCCCEEEeCCh
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAW---DFFSDPT---VEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~---d~~~D~~---~e~~~~l~~~GVDGIiTD~P 702 (811)
-+ -|. -.|| ++++++++ .+++|.+|-|..|..++-. .=|-|.. -|...-++.+|.|+|||=|-
T Consensus 246 MV-----KPa-l~YL----DIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYfA 315 (323)
T PRK09283 246 MV-----KPA-LPYL----DIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYFA 315 (323)
T ss_pred EE-----cCC-chHH----HHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecCH
Confidence 33 232 1133 78999977 5999999999988643322 1122332 23334446899999999999
Q ss_pred HHHHHHH
Q 003550 703 MTAARYR 709 (811)
Q Consensus 703 ~~~~~~~ 709 (811)
..+.+++
T Consensus 316 ~~~a~~L 322 (323)
T PRK09283 316 KDAARWL 322 (323)
T ss_pred HHHHHhh
Confidence 9888876
No 183
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=47.72 E-value=53 Score=36.12 Aligned_cols=134 Identities=25% Similarity=0.252 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH----Hhc----cC--ceEEEEEccc-cchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TS--YELVYKVKEN-IRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l----k~~----p~--~~~~~l~~~~-~~d~~~~~l~~i~~~a~~v 629 (811)
-+.++.+.|.+.|+. .+|-|-|+.......| |.. |. =+..|.++.. -+.+-.+...++..-|+.+
T Consensus 167 rV~aIR~aLD~~G~~----~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~l 242 (320)
T cd04824 167 RVRAIKQALIQAGLG----NKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMI 242 (320)
T ss_pred HHHHHHHHHHHCCCc----cCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEE
Confidence 577899999999994 3788888877666553 443 32 1334444332 1112223334445555544
Q ss_pred ccccceeecCCccccCCCHHHHHHHHHc--CCcEEEEecCCccccccc---ccCCCh---HHHHHHHHHhcCCCEEEeCC
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQSF--KLPVYVETFSNEFVSQAW---DFFSDP---TVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~~--Gl~V~vwtvnne~~~~~~---d~~~D~---~~e~~~~l~~~GVDGIiTD~ 701 (811)
-+ -|. -.| -+++++++++ +++|.+|-|..|..++-. .=|-|. .-|...-++.+|.|.|||=|
T Consensus 243 MV-----KPa-l~Y----LDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYf 312 (320)
T cd04824 243 MV-----KPG-TPY----LDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYF 312 (320)
T ss_pred EE-----cCC-chH----HHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeec
Confidence 33 232 112 3789999875 899999999888543321 112233 23444455789999999999
Q ss_pred hHHHHHH
Q 003550 702 PMTAARY 708 (811)
Q Consensus 702 P~~~~~~ 708 (811)
-..+.++
T Consensus 313 A~~~a~w 319 (320)
T cd04824 313 TPELLDW 319 (320)
T ss_pred HHHHHhh
Confidence 8877765
No 184
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=45.46 E-value=15 Score=40.62 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=16.7
Q ss_pred hHHHHHHHHcCCeEEEEe
Q 003550 330 TTIVLDAHKERLEVFASN 347 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wt 347 (811)
..+|++||++||+||||.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 469999999999999997
No 185
>PRK06852 aldolase; Validated
Probab=45.36 E-value=1e+02 Score=33.94 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=90.8
Q ss_pred HHHHHhhhcCceEEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCc-ccchHHHhhhHHHHHh-h------ccccc
Q 003550 240 FVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTT-NQTYGSLLKNLTFIKT-F------ASGIL 311 (811)
Q Consensus 240 ~l~~~lk~~~~~~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~-~~~y~~l~~~L~~i~~-~------a~gi~ 311 (811)
.+++.+.+.+..-+.. ..+.++......+ +.+++..+-......+.. ...+..+....++... - |+++.
T Consensus 63 ~~i~~~~~~g~dav~~-~~G~l~~~~~~~~--~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~ 139 (304)
T PRK06852 63 HLFRIASKAKIGVFAT-QLGLIARYGMDYP--DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVG 139 (304)
T ss_pred HHHHHHHhcCCCEEEe-CHHHHHhhccccC--CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEE
Confidence 4555555556653322 3788877655554 677776554432222100 0111133332333222 2 44544
Q ss_pred CCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCCh---HHHHHHHHHcCCCccCeEeccCC---
Q 003550 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP---LTEYLSFIDNGDFSVDGVLSDFP--- 385 (811)
Q Consensus 312 ~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~---~~e~~~~i~~G~~~VDgIiTD~P--- 385 (811)
+.- |+=.......+..-.+++++||+.|+.+.+|....-....-. .|| .--.+-...+| +|-|=|+||
T Consensus 140 v~v-~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~--~~~~~ia~aaRiaaELG---ADIVKv~y~~~~ 213 (304)
T PRK06852 140 YTI-YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDE--KDPHLIAGAAGVAACLG---ADFVKVNYPKKE 213 (304)
T ss_pred EEE-ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCC--ccHHHHHHHHHHHHHHc---CCEEEecCCCcC
Confidence 321 000000011122224688999999999999987543211111 132 11224466778 999999999
Q ss_pred --CCcchhhhhhhccCCCccccccceeecCCCCCCCCCCchHHHHHHHHH-CCCCeee
Q 003550 386 --LTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAIS-DGVDFID 440 (811)
Q Consensus 386 --~~a~~~~~~~~~~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~-~Gad~IE 440 (811)
.....+.+ .-. .-.+.|+||+ |++-.-.+-.+.--+.|++ .||.++-
T Consensus 214 ~~g~~e~f~~----vv~--~~g~vpVvia--GG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 214 GANPAELFKE----AVL--AAGRTKVVCA--GGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred CCCCHHHHHH----HHH--hCCCCcEEEe--CCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 32222221 110 0113466665 4444333456666667778 8987753
No 186
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=42.70 E-value=29 Score=38.44 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHCCCCeeecccccccC
Q 003550 422 SCTNLAYQKAISDGVDFIDCPVQMSKD 448 (811)
Q Consensus 422 ENTl~Af~~Ai~~Gad~IE~DVqlTKD 448 (811)
+|+...+..+++.|+..||+||+-..+
T Consensus 44 ~~s~~~i~~QLd~GvR~LELDv~~d~~ 70 (324)
T cd08589 44 DYSHPPLADQLDSGVRQLELDVWADPE 70 (324)
T ss_pred cCCCccHHHHHhhCcceEEEEEeecCC
Confidence 588889999999999999999998654
No 187
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=42.57 E-value=3.6e+02 Score=31.91 Aligned_cols=165 Identities=15% Similarity=0.191 Sum_probs=83.2
Q ss_pred EEecCCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHh-hcccccCCCcccccCCCcccCCCCh
Q 003550 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHT 330 (811)
Q Consensus 252 ~isSf~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~ 330 (811)
+..--.++-|+.+++..| ++++..++-+.+.+.. ..|.+-. .-.+++. ...|+.+-.-+ .+. +.+..-.
T Consensus 58 fl~Edpwerlr~lr~~~~--nt~lqmL~Rg~N~vGy---~~y~ddv-v~~fv~~a~~~Gidi~RIf-d~l---ndv~nl~ 127 (499)
T PRK12330 58 FLNEDPWERLRTFRKLMP--NSRLQMLLRGQNLLGY---RHYEDEV-VDRFVEKSAENGMDVFRVF-DAL---NDPRNLE 127 (499)
T ss_pred ccCCCHHHHHHHHHHhCC--CCeEEEEEcccccCCc---cCcchhH-HHHHHHHHHHcCCCEEEEE-ecC---ChHHHHH
Confidence 343445788999999988 6777654443443321 2233211 1123333 23454432111 111 2222224
Q ss_pred HHHHHHHHcCCeE---EEEecCCCCCcccCCCCCh---HHHHHHHHHcCCCccCeEe-ccC-----CCCcchhhhhhhcc
Q 003550 331 TIVLDAHKERLEV---FASNFANDIPISFNYSYDP---LTEYLSFIDNGDFSVDGVL-SDF-----PLTPSAAVDCFAHL 398 (811)
Q Consensus 331 ~~V~~ah~~Gl~V---~~Wtv~n~~~~~~~~~~D~---~~e~~~~i~~G~~~VDgIi-TD~-----P~~a~~~~~~~~~~ 398 (811)
..++.++++|..+ .++|.... +|+ .+-.+++.+.| +|.|. .|- |..+.+.++....
T Consensus 128 ~ai~~vk~ag~~~~~~i~yt~sp~--------~t~e~~~~~a~~l~~~G---ad~I~IkDtaGll~P~~~~~LV~~Lk~- 195 (499)
T PRK12330 128 HAMKAVKKVGKHAQGTICYTVSPI--------HTVEGFVEQAKRLLDMG---ADSICIKDMAALLKPQPAYDIVKGIKE- 195 (499)
T ss_pred HHHHHHHHhCCeEEEEEEEecCCC--------CCHHHHHHHHHHHHHcC---CCEEEeCCCccCCCHHHHHHHHHHHHH-
Confidence 5789999999977 24454321 222 23455688888 98773 343 3333333332211
Q ss_pred CCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccccc
Q 003550 399 GKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQM 445 (811)
Q Consensus 399 ~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVql 445 (811)
..+..-..-+-+|.- .| ...+.+.+|++.|||+|++-|.-
T Consensus 196 --~~~~~ipI~~H~Hnt-~G----lA~An~laAieAGad~vDtai~G 235 (499)
T PRK12330 196 --ACGEDTRINLHCHST-TG----VTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred --hCCCCCeEEEEeCCC-CC----cHHHHHHHHHHcCCCEEEeeccc
Confidence 111112233556652 33 44455566788999998876643
No 188
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=42.20 E-value=1e+02 Score=31.84 Aligned_cols=145 Identities=12% Similarity=0.187 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHhcCCCCcceeeeecCCCc--cCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCCcccCC--CC
Q 003550 255 SPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLYLL--PH 329 (811)
Q Consensus 255 Sf~~~~L~~l~~~~~~~~~~lv~~~~~~~~--~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~~~~l~--~~ 329 (811)
+++.+.++.+++.. +.|+.. +..+.. +-. ++..+..|...+...+.. ++|+.+- .+.+ ++.+. .-
T Consensus 36 TPS~g~i~~~~~~~---~ipv~v-MIRpr~gdF~Y-s~~E~~~M~~dI~~~~~~GadG~VfG--~L~~---dg~iD~~~~ 105 (201)
T PF03932_consen 36 TPSLGLIRQAREAV---DIPVHV-MIRPRGGDFVY-SDEEIEIMKEDIRMLRELGADGFVFG--ALTE---DGEIDEEAL 105 (201)
T ss_dssp ---HHHHHHHHHHT---TSEEEE-E--SSSS-S----HHHHHHHHHHHHHHHHTT-SEEEE----BET---TSSB-HHHH
T ss_pred CcCHHHHHHHHhhc---CCceEE-EECCCCCCccC-CHHHHHHHHHHHHHHHHcCCCeeEEE--eECC---CCCcCHHHH
Confidence 57888888888755 355432 333321 110 112222333334444443 5554321 1111 11111 11
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc-CCCCcchhhhhhhccCCCccccccc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD-FPLTPSAAVDCFAHLGKNASKSANL 408 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD-~P~~a~~~~~~~~~~~~~~~~~~~p 408 (811)
.++++.|+ |++ |||.. +++...||.+.++++++.| ++.|+|- -+..+.+-++....+- ....+++
T Consensus 106 ~~Li~~a~--~~~---~tFHR----AfD~~~d~~~al~~L~~lG---~~rVLTSGg~~~a~~g~~~L~~lv--~~a~~~i 171 (201)
T PF03932_consen 106 EELIEAAG--GMP---VTFHR----AFDEVPDPEEALEQLIELG---FDRVLTSGGAPTALEGIENLKELV--EQAKGRI 171 (201)
T ss_dssp HHHHHHHT--TSE---EEE-G----GGGGSSTHHHHHHHHHHHT----SEEEESTTSSSTTTCHHHHHHHH--HHHTTSS
T ss_pred HHHHHhcC--CCe---EEEeC----cHHHhCCHHHHHHHHHhcC---CCEEECCCCCCCHHHHHHHHHHHH--HHcCCCc
Confidence 35666664 555 67764 5677788999999999999 9999997 3444444444333331 1112344
Q ss_pred eeecCCCCCCCCCCchHH
Q 003550 409 LVISKNGASGDYPSCTNL 426 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~ 426 (811)
.|++ ++|..++|-..
T Consensus 172 ~Im~---GgGv~~~nv~~ 186 (201)
T PF03932_consen 172 EIMP---GGGVRAENVPE 186 (201)
T ss_dssp EEEE---ESS--TTTHHH
T ss_pred EEEe---cCCCCHHHHHH
Confidence 4444 23677777543
No 189
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.73 E-value=3.5e+02 Score=31.58 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=53.7
Q ss_pred hHHHHHHHHcCCeEE---EEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEe-ccC-----CCCcchhhhhhhccCC
Q 003550 330 TTIVLDAHKERLEVF---ASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVL-SDF-----PLTPSAAVDCFAHLGK 400 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~---~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIi-TD~-----P~~a~~~~~~~~~~~~ 400 (811)
...|+.|+++|++|. +.++. . ....+|. .+-.+++.+.| +|.|. .|- |..+.+.++.....
T Consensus 126 ~~~v~~ak~~G~~v~~~i~~t~~-p-~~~~~~~---~~~a~~l~~~G---ad~I~i~Dt~G~l~P~~v~~lv~alk~~-- 195 (448)
T PRK12331 126 ETAVKATKKAGGHAQVAISYTTS-P-VHTIDYF---VKLAKEMQEMG---ADSICIKDMAGILTPYVAYELVKRIKEA-- 195 (448)
T ss_pred HHHHHHHHHcCCeEEEEEEeecC-C-CCCHHHH---HHHHHHHHHcC---CCEEEEcCCCCCCCHHHHHHHHHHHHHh--
Confidence 458999999999864 33332 1 1111111 34566788888 88764 342 33333333322211
Q ss_pred CccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccc
Q 003550 401 NASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (811)
Q Consensus 401 ~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVq 444 (811)
. .-+.-+-+|.- .|.+.-|++ +|++.|||+|++-|.
T Consensus 196 --~-~~pi~~H~Hnt-~GlA~AN~l----aAieaGad~vD~sv~ 231 (448)
T PRK12331 196 --V-TVPLEVHTHAT-SGIAEMTYL----KAIEAGADIIDTAIS 231 (448)
T ss_pred --c-CCeEEEEecCC-CCcHHHHHH----HHHHcCCCEEEeecc
Confidence 1 12334556653 345555555 556789999988776
No 190
>PRK13561 putative diguanylate cyclase; Provisional
Probab=41.70 E-value=1.1e+02 Score=36.99 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..+++.+|+.|++|.+-+|.++. ...++.++|||++.--+
T Consensus 594 ~~i~~~a~~l~i~viAegVE~~~--------------~~~~l~~~g~d~~QG~~ 633 (651)
T PRK13561 594 AAIIMLAQSLNLQVIAEGVETEA--------------QRDWLLKAGVGIAQGFL 633 (651)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH--------------HHHHHHhcCCCEEeCCc
Confidence 35889999999999999999884 55666799999887654
No 191
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=41.38 E-value=3.6e+02 Score=29.49 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeC-------ChHHHHH--
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQST-------DSSVLMK-- 594 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSf-------d~~~L~~-- 594 (811)
+.++.|+|+.+++.+-.+ .-+++-+ .+...+++++-++.+ ..|+||-- ..+.+..
T Consensus 3 lv~~k~iL~~A~~~~yAV-~AfN~~n---------~e~~~avi~AAee~~------sPvIlq~s~~~~~~~~~~~~~~~~ 66 (286)
T PRK12738 3 IISTKYLLQDAQANGYAV-PAFNIHN---------AETIQAILEVCSEMR------SPVILAGTPGTFKHIALEEIYALC 66 (286)
T ss_pred CCcHHHHHHHHHHCCceE-EEEEeCC---------HHHHHHHHHHHHHHC------CCEEEEcCcchhhhCCHHHHHHHH
Confidence 568899999998873211 2333322 235567777766654 36777642 2222221
Q ss_pred --HHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 595 --LREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 595 --lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
+.+..++|+++-++... +++.+++-. ..-+++++-..+ ..+..+.++|+.+|..|+.|=+.
T Consensus 67 ~~~a~~~~VPValHLDHg~------~~e~i~~ai---~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaE 134 (286)
T PRK12738 67 SAYSTTYNMPLALHLDHHE------SLDDIRRKV---HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAE 134 (286)
T ss_pred HHHHHHCCCCEEEECCCCC------CHHHHHHHH---HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 22236789998888741 244443321 112233332211 12344678999999999998443
No 192
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.28 E-value=33 Score=37.14 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHH
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~ 704 (811)
+++|+.++++|+.|..|.-.+..- -..++... ..+...++.++||.||=+||-+.
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~-~~~~~~~~-~~~~f~~~~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGG-NVANLEKQ-LDEAFKLYAKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTT-BHHHHHCC-HHHHHHHHHHCTEEEEEEE--SS
T ss_pred HHHHHHHHHcCCCEEEEEeCCcch-hhHhHHHH-HHHHHHHHHHcCCCEEeeCcCCC
Confidence 689999999999999998765510 00012222 24555556799999999999763
No 193
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=40.24 E-value=70 Score=35.24 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHH----HHhc-cCc----eEEEEEccc-cchhchHhHHHHHHhhhhhc
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMK----LREK-TSY----ELVYKVKEN-IRDALNQTIEDIKKFADSVV 630 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~----lk~~-p~~----~~~~l~~~~-~~d~~~~~l~~i~~~a~~v~ 630 (811)
-+.++.+.|.+.|+. .|-|-|+....... ||.. ... +..|.++.. .+.+-.+...++..-|+.+-
T Consensus 173 rV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lM 247 (322)
T PRK13384 173 QVKAIRQGLDAAGFE-----HVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILM 247 (322)
T ss_pred HHHHHHHHHHHCCCC-----CCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEE
Confidence 577899999999997 57888877666554 3543 221 233333332 11122233344455555443
Q ss_pred cccceeecCCccccCCCHHHHHHHHHc-CCcEEEEecCCccccccc---ccCCCh---HHHHHHHHHhcCCCEEEeCChH
Q 003550 631 LSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAW---DFFSDP---TVEINTYYEGAGIDGVITEFPM 703 (811)
Q Consensus 631 ~~~~~i~p~~~~~l~~~~~~V~~~~~~-Gl~V~vwtvnne~~~~~~---d~~~D~---~~e~~~~l~~~GVDGIiTD~P~ 703 (811)
+ -|. -.|| ++|+++++. +++|.+|-|..|..++-. .=|-|. .-|...-++.+|.|+|||=|-.
T Consensus 248 V-----KPa-l~YL----DIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~ 317 (322)
T PRK13384 248 V-----KPG-TPYL----DVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAK 317 (322)
T ss_pred E-----cCC-chHH----HHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHH
Confidence 3 232 1133 788888775 999999999988643322 112233 2344444568999999998877
Q ss_pred HHHH
Q 003550 704 TAAR 707 (811)
Q Consensus 704 ~~~~ 707 (811)
.+.+
T Consensus 318 ~~a~ 321 (322)
T PRK13384 318 QYAQ 321 (322)
T ss_pred HHhh
Confidence 6654
No 194
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.81 E-value=3.9e+02 Score=29.62 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChH-----------HH
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS-----------VL 592 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~-----------~L 592 (811)
+.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-.... .+
T Consensus 2 lv~~k~lL~~A~~~~yaV~-AfN~~n---------~e~~~avi~AAe~~~------sPvIlq~s~~~~~~~g~~~~~~~~ 65 (307)
T PRK05835 2 LVKGNEILLKAHKEGYGVG-AFNFVN---------FEMLNAIFEAGNEEN------SPLFIQASEGAIKYMGIDMAVGMV 65 (307)
T ss_pred CCCHHHHHHHHHHCCceEE-EEEECC---------HHHHHHHHHHHHHHC------CCEEEEcCccHHhhCChHHHHHHH
Confidence 4578899999888632111 223221 235556666666543 36788754321 12
Q ss_pred HHHHhc-cCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 593 MKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 593 ~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
+.+.+. +.+|+++-++... .++.+++- +..-+++++-..+ ..+..+.++|+.+|.+|+.|=+.
T Consensus 66 ~~~a~~~~~VPValHLDHg~------~~e~i~~a---i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE 134 (307)
T PRK05835 66 KIMCERYPHIPVALHLDHGT------TFESCEKA---VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE 134 (307)
T ss_pred HHHHHhcCCCeEEEECCCCC------CHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222333 4589998888742 23333322 2222344432211 12334678999999999988443
No 195
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.47 E-value=3.1e+02 Score=29.97 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCC-------hHHHH-HH
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD-------SSVLM-KL 595 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd-------~~~L~-~l 595 (811)
+.++.|+|+.+++.+-.+ --+++-+ .....+++++-++.+ ..|+||-.. ...+. .+
T Consensus 3 lv~~k~ll~~A~~~~yaV-~AfN~~n---------~e~~~avi~AAe~~~------sPvIl~~~~~~~~~~g~~~~~~~~ 66 (283)
T PRK07998 3 LVNGRILLDRIQEKHVLA-GAFNTTN---------LETTISILNAIERSG------LPNFIQIAPTNAQLSGYDYIYEIV 66 (283)
T ss_pred CCcHHHHHHHHHHCCCEE-EEEeeCC---------HHHHHHHHHHHHHhC------CCEEEECcHhHHhhCCHHHHHHHH
Confidence 568899999998873211 1223322 124556666665543 367777533 12222 12
Q ss_pred H---hccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE--e
Q 003550 596 R---EKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE--T 665 (811)
Q Consensus 596 k---~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw--t 665 (811)
+ +..++|+++-++... .++.+.+- +..-.+++.-..+ ..+..+.++|+.+|..|+.|=+. .
T Consensus 67 ~~~A~~~~vPV~lHLDH~~------~~e~i~~A---i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~ 137 (283)
T PRK07998 67 KRHADKMDVPVSLHLDHGK------TFEDVKQA---VRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGA 137 (283)
T ss_pred HHHHHHCCCCEEEECcCCC------CHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 2 236789998888741 13333221 1112233332111 12334678999999999988222 1
Q ss_pred c-CCcccc-cccccCCChHHHHHHHHHhcCCCEE
Q 003550 666 F-SNEFVS-QAWDFFSDPTVEINTYYEGAGIDGV 697 (811)
Q Consensus 666 v-nne~~~-~~~d~~~D~~~e~~~~l~~~GVDGI 697 (811)
+ ..+.-. ..-+++.||. +..+|+.+.|||.+
T Consensus 138 vgg~ed~~~~~~~~~T~pe-~a~~Fv~~TgvD~L 170 (283)
T PRK07998 138 ILGKEDDHVSEADCKTEPE-KVKDFVERTGCDML 170 (283)
T ss_pred CCCccccccccccccCCHH-HHHHHHHHhCcCee
Confidence 2 222100 0013345555 46677766777744
No 196
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=39.23 E-value=3.9e+02 Score=29.18 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HHHH----
Q 003550 525 MKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SVLM---- 593 (811)
Q Consensus 525 pTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~L~---- 593 (811)
.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-... ..+.
T Consensus 2 v~~k~ll~~A~~~~yAV~-AfN~~n---------~e~~~avi~AAee~~------sPvIlq~s~~~~~~~~~~~~~~~~~ 65 (282)
T TIGR01858 2 VSTKYMLQDAQAGGYAVP-AFNIHN---------LETIQAVVETAAEMR------SPVILAGTPGTFKHAGTEYIVALCS 65 (282)
T ss_pred CcHHHHHHHHHHcCCeEE-EEEeCC---------HHHHHHHHHHHHHhC------CCEEEEeCccHHhhCCHHHHHHHHH
Confidence 467889988887632111 223322 234556666665543 3677775331 2122
Q ss_pred HHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 594 KLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 594 ~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
.+.+.-++|+++-++... +++.+++- +..-.++++-..+ ..+..+.++|+.+|..|+.|=..
T Consensus 66 ~~a~~~~VPValHLDHg~------~~e~i~~a---i~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaE 132 (282)
T TIGR01858 66 AASTTYNMPLALHLDHHE------SLDDIRQK---VHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAE 132 (282)
T ss_pred HHHHHCCCCEEEECCCCC------CHHHHHHH---HHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 122235789998888742 13333322 2222234332211 12334678999999999998433
No 197
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=38.49 E-value=55 Score=32.57 Aligned_cols=66 Identities=21% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccc-cceeecCCCCCCC--CCCchHHHHHHHHHCCCCee
Q 003550 363 LTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA-NLLVISKNGASGD--YPSCTNLAYQKAISDGVDFI 439 (811)
Q Consensus 363 ~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~-~plIIAHRGasg~--~PENTl~Af~~Ai~~Gad~I 439 (811)
....+++++.| ||||+..- +.++...... .+ +..++.+-|+... ..+.+...-+.|.+.|||+|
T Consensus 16 ~~~~~~~~~~g---v~gi~~~g-----~~i~~~~~~~-----~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 16 AKLCDEAIEYG---FAAVCVNP-----GYVRLAADAL-----AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred HHHHHHHHHhC---CcEEEECH-----HHHHHHHHHh-----CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 35566678889 99999885 3333222110 12 3446666665442 36888888899999999998
Q ss_pred ec
Q 003550 440 DC 441 (811)
Q Consensus 440 E~ 441 (811)
.+
T Consensus 83 ~v 84 (201)
T cd00945 83 DV 84 (201)
T ss_pred EE
Confidence 87
No 198
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=38.01 E-value=2.3e+02 Score=33.21 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchH-HHhhhHHHHHh-hcccccCCCcccccCCCcccCCCChHHH
Q 003550 256 PEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYG-SLLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIV 333 (811)
Q Consensus 256 f~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~-~l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V 333 (811)
-.++-|+.+++..| ++++..++-+.+.+.. ..|. ++.. .+++. ...|+.+..-+ ++-+....-...+
T Consensus 70 dpwerlr~~r~~~~--nt~lqmLlRG~n~vgy---~~ypddvv~--~fv~~a~~~Gidi~Rif----d~lnd~~n~~~ai 138 (468)
T PRK12581 70 DPWERLRTLKKGLP--NTRLQMLLRGQNLLGY---RHYADDIVD--KFISLSAQNGIDVFRIF----DALNDPRNIQQAL 138 (468)
T ss_pred CHHHHHHHHHHhCC--CCceeeeeccccccCc---cCCcchHHH--HHHHHHHHCCCCEEEEc----ccCCCHHHHHHHH
Confidence 45788999999998 6777765555554321 1221 2211 12332 24455442211 1111111224578
Q ss_pred HHHHHcCCeEE---EEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEe-ccC-----CCCcchhhhhhhccCCCccc
Q 003550 334 LDAHKERLEVF---ASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVL-SDF-----PLTPSAAVDCFAHLGKNASK 404 (811)
Q Consensus 334 ~~ah~~Gl~V~---~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIi-TD~-----P~~a~~~~~~~~~~~~~~~~ 404 (811)
+.+++.|+++. ++|.... -..+|. .+..+.+.+.| +|.|. .|- |..+.+.++..... .
T Consensus 139 ~~ak~~G~~~~~~i~yt~sp~--~t~~y~---~~~a~~l~~~G---ad~I~IkDtaG~l~P~~v~~Lv~alk~~----~- 205 (468)
T PRK12581 139 RAVKKTGKEAQLCIAYTTSPV--HTLNYY---LSLVKELVEMG---ADSICIKDMAGILTPKAAKELVSGIKAM----T- 205 (468)
T ss_pred HHHHHcCCEEEEEEEEEeCCc--CcHHHH---HHHHHHHHHcC---CCEEEECCCCCCcCHHHHHHHHHHHHhc----c-
Confidence 99999999864 3333211 011111 24456678888 98764 343 44444444333211 1
Q ss_pred cccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccc
Q 003550 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (811)
Q Consensus 405 ~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVq 444 (811)
.-+.-+-+|.- .+...+.+..|++.|||.|++-+.
T Consensus 206 ~~pi~~H~Hnt-----~GlA~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 206 NLPLIVHTHAT-----SGISQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred CCeEEEEeCCC-----CccHHHHHHHHHHcCCCEEEeecc
Confidence 12233455542 334445555667889999998875
No 199
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.44 E-value=4.5e+02 Score=28.73 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HHHH---
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SVLM--- 593 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~L~--- 593 (811)
+.++.|+|+.+++..-.++ -+++-+ .+...+++++-++.+ ..|+||-... +.+.
T Consensus 3 lv~~~~~l~~A~~~~yaV~-AfN~~n---------~e~~~avi~AAee~~------sPvIiq~~~~~~~~~g~~~~~~~~ 66 (284)
T PRK12737 3 IISTKNMLKKAQAEGYAVP-AFNIHN---------LETLQVVVETAAELR------SPVILAGTPGTFSYAGTDYIVAIA 66 (284)
T ss_pred CCcHHHHHHHHHHcCceEE-EEEeCC---------HHHHHHHHHHHHHhC------CCEEEEcCccHHhhCCHHHHHHHH
Confidence 4678999999887632111 223222 234556666665543 3677775431 2122
Q ss_pred -HHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 594 -KLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 594 -~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
.+.+.-++|+++-.+... .++.+++- +..-+++++-..+ ..+..+.++|+.+|..|+.|=+.
T Consensus 67 ~~~a~~~~VPValHLDH~~------~~e~i~~a---i~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE 134 (284)
T PRK12737 67 EVAARKYNIPLALHLDHHE------DLDDIKKK---VRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAE 134 (284)
T ss_pred HHHHHHCCCCEEEECCCCC------CHHHHHHH---HHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222235789998888742 13333221 1122233332111 12334678999999999998443
No 200
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.20 E-value=99 Score=32.01 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=12.5
Q ss_pred CCCccchHHHHHHHHHHHHHHhh
Q 003550 788 GQPKVATGIFLSTMAMLLITLLL 810 (811)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~ 810 (811)
..+-.-+|+++.+.++||.++|+
T Consensus 126 ~K~amLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICTLLF 148 (227)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555555555554
No 201
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=37.01 E-value=1.3e+02 Score=35.02 Aligned_cols=137 Identities=15% Similarity=0.204 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEE---------eCChHHHHHHHh
Q 003550 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ---------STDSSVLMKLRE 597 (811)
Q Consensus 527 L~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~Viiq---------Sfd~~~L~~lk~ 597 (811)
++|+=+++.+..+ ..+.|++.-.+... ..+.+.+.+.+++++... +||.+- +-....+.++|+
T Consensus 341 ~~dlG~~L~~~~~-l~VsINl~a~Dl~s----~rli~~~~~~l~~~~v~p---qQI~lElTER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 341 FRDLGDLLRQHRD-LHVSINLSASDLAS----PRLIDRLNRKLAQYQVRP---QQIALELTERTFADPKKMTPIILRLRE 412 (524)
T ss_pred HHHhHHHHHhCcc-eEEEEeeeehhhcC----chHHHHHHHHHHhcCcCh---HHheeehhhhhhcCchhhhHHHHHHHh
Confidence 3444455555432 35666665444322 136666777777777654 344443 222344555665
Q ss_pred ccCceEEEEEccccc--------hhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCc
Q 003550 598 KTSYELVYKVKENIR--------DALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNE 669 (811)
Q Consensus 598 ~p~~~~~~l~~~~~~--------d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne 669 (811)
. .+. +|+-+...+ ++.-+.++.=|.|.+.++-+... -...+.+++.+|+.||++.+.++..+
T Consensus 413 a-G~~-IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~--------~~I~~hII~MAk~L~L~iVaEGVEte 482 (524)
T COG4943 413 A-GHE-IYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSAS--------HLIAPHIIEMAKSLGLKIVAEGVETE 482 (524)
T ss_pred c-CCe-EEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCccc--------chhHHHHHHHHHHcCCcEEeecccHH
Confidence 4 111 222222111 11111233335565555543211 11345799999999999999999766
Q ss_pred ccccccccCCChHHHHHHHHHhcCCC
Q 003550 670 FVSQAWDFFSDPTVEINTYYEGAGID 695 (811)
Q Consensus 670 ~~~~~~d~~~D~~~e~~~~l~~~GVD 695 (811)
. -..|+.+.||+
T Consensus 483 e--------------Q~~~LR~~Gv~ 494 (524)
T COG4943 483 E--------------QVDWLRKRGVH 494 (524)
T ss_pred H--------------HHHHHHHcCCc
Confidence 3 45577677764
No 202
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=36.76 E-value=2e+02 Score=31.49 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHH---hcCCCCCCCcEE--EEEeCChHHHHHHHh
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALG---NAGYNKQTALKV--MIQSTDSSVLMKLRE 597 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~---~~g~~~~~~~~V--iiqSfd~~~L~~lk~ 597 (811)
.-.|.++++.+...+..+++.++..... +.+.+++.|+ +.|+. .+| =+||++.++|+.+++
T Consensus 93 ~~~L~~l~~~i~~~~~~~~isi~trpd~---------l~~e~l~~L~~l~~~G~~----~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 93 VEVLKEMYEQALSYDDVVGLSVGTRPDC---------VPDEVLDLLAEYVERGYE----VWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEecCCc---------CCHHHHHHHHHhhhCCce----EEEEEccCcCCHHHHHHHcC
Confidence 3446777777766544456677764332 2233445554 34553 233 488999999998875
No 203
>PRK08227 autoinducer 2 aldolase; Validated
Probab=36.68 E-value=49 Score=35.70 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=49.5
Q ss_pred HHHHHHh-hhhhccccceeecCCc---cccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCC
Q 003550 619 IEDIKKF-ADSVVLSKESVYPLNS---AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGI 694 (811)
Q Consensus 619 l~~i~~~-a~~v~~~~~~i~p~~~---~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GV 694 (811)
+++..+. |++|++. +++.+. ..+..-.++++++|+.|+++..|....+...-.. |-.+-..+.-.++|.
T Consensus 100 VeeAvrlGAdAV~~~---v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~----~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQ---VFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDA----RYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEE---EecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchH----HHHHHHHHHHHHHcC
Confidence 5554444 7777663 222211 1222334688999999999999986655321101 111222333357999
Q ss_pred CEEEeCChH-HHHHHHH
Q 003550 695 DGVITEFPM-TAARYRR 710 (811)
Q Consensus 695 DGIiTD~P~-~~~~~~~ 710 (811)
|-|=|+||. .+.+..+
T Consensus 173 DiVK~~y~~~~f~~vv~ 189 (264)
T PRK08227 173 QIIKTYYVEEGFERITA 189 (264)
T ss_pred CEEecCCCHHHHHHHHH
Confidence 999999998 4444443
No 204
>PRK11059 regulatory protein CsrD; Provisional
Probab=35.71 E-value=2.5e+02 Score=34.09 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..++..+|+.|++|.+-+|.++. ....+.++|||++.-.+
T Consensus 593 ~sli~~a~~~~i~viAegVEt~~--------------~~~~l~~lGvd~~QG~~ 632 (640)
T PRK11059 593 RSLVGACAGTETQVFATGVESRE--------------EWQTLQELGVSGGQGDF 632 (640)
T ss_pred HHHHHHHHHCCCeEEEEEeCCHH--------------HHHHHHHhCCCeeecCc
Confidence 46889999999999999999884 44555699999987644
No 205
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=35.19 E-value=44 Score=37.42 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeCChHHHHHH-Hhc-cCceEEEEEcccc----chhc----hHhHHHHHHh-hhhhccc
Q 003550 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKL-REK-TSYELVYKVKENI----RDAL----NQTIEDIKKF-ADSVVLS 632 (811)
Q Consensus 564 ~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~l-k~~-p~~~~~~l~~~~~----~d~~----~~~l~~i~~~-a~~v~~~ 632 (811)
.+++.+.+.|.+ -++.+ ...++.. +.. .++++++-++... .+.. -.++++..+. |++|++.
T Consensus 95 ~~i~~a~~~g~d-----Av~~~---~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t 166 (348)
T PRK09250 95 NIVKLAIEAGCN-----AVAST---LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT 166 (348)
T ss_pred HHHHHHHhcCCC-----EEEeC---HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE
Confidence 455555555544 33333 4555553 222 4566665555421 1100 1225555444 7776662
Q ss_pred cceeecCCc---cccCCCHHHHHHHHHcCCcEEEEec-CCcccccccccCCChH--HHHHHHHHhcCCCEEEeCChHHHH
Q 003550 633 KESVYPLNS---AFITSATDIVQRLQSFKLPVYVETF-SNEFVSQAWDFFSDPT--VEINTYYEGAGIDGVITEFPMTAA 706 (811)
Q Consensus 633 ~~~i~p~~~---~~l~~~~~~V~~~~~~Gl~V~vwtv-nne~~~~~~d~~~D~~--~e~~~~l~~~GVDGIiTD~P~~~~ 706 (811)
+++.+. ..+..-.++++++|+.|+++.+|.. +.+.+....||.-+|. +-..+...++|+|.|=|++|....
T Consensus 167 ---vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~ 243 (348)
T PRK09250 167 ---IYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNG 243 (348)
T ss_pred ---EecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChh
Confidence 233221 1122234688999999999999965 3333333334433332 333444457999999999996554
Q ss_pred HHH
Q 003550 707 RYR 709 (811)
Q Consensus 707 ~~~ 709 (811)
.+.
T Consensus 244 ~f~ 246 (348)
T PRK09250 244 GYK 246 (348)
T ss_pred hHH
Confidence 443
No 206
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.15 E-value=1.6e+02 Score=31.91 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHH-HHhhcccccCCCcccccCCCcccCCCChHHHHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF-IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~-i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~a 336 (811)
.+.++....... +.+++..+-......+.. .+..+....++ ++--|+++.+.-. +=.......+..-..++++|
T Consensus 62 ~G~~~~~~~~~~--~~~lil~ls~~t~~~~~~--~~~~l~~sVeeAvrlGAdAV~~~v~-~Gs~~E~~~l~~l~~v~~ea 136 (264)
T PRK08227 62 RGILRSVVPPAT--NKPVVLRASGGNSILKEL--SNEAVAVDMEDAVRLNACAVAAQVF-IGSEYEHQSIKNIIQLVDAG 136 (264)
T ss_pred hhHHHhcccccC--CCcEEEEEcCCCCCCCCC--CcccceecHHHHHHCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence 677776544443 567776544332221111 12222222333 3333666654211 10110111222225688999
Q ss_pred HHcCCeEEEEecCCCCCcccCCCCChHH----HHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccceeec
Q 003550 337 HKERLEVFASNFANDIPISFNYSYDPLT----EYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVIS 412 (811)
Q Consensus 337 h~~Gl~V~~Wtv~n~~~~~~~~~~D~~~----e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~plIIA 412 (811)
|+.|+.+.+|.-..... .|+.. -.+-..++| .|-|=|+||. +.|...-. --+.|++|+
T Consensus 137 ~~~G~Plla~~prG~~~------~~~~~~ia~aaRiaaELG---ADiVK~~y~~------~~f~~vv~---a~~vPVvia 198 (264)
T PRK08227 137 LRYGMPVMAVTAVGKDM------VRDARYFSLATRIAAEMG---AQIIKTYYVE------EGFERITA---GCPVPIVIA 198 (264)
T ss_pred HHhCCcEEEEecCCCCc------CchHHHHHHHHHHHHHHc---CCEEecCCCH------HHHHHHHH---cCCCcEEEe
Confidence 99999999997543311 11111 123456778 9999999996 12222210 123466665
Q ss_pred CCCCCCCCCCchHHHHHHHHHCCCCeee
Q 003550 413 KNGASGDYPSCTNLAYQKAISDGVDFID 440 (811)
Q Consensus 413 HRGasg~~PENTl~Af~~Ai~~Gad~IE 440 (811)
|++..-.+-.+.--+.|++.||.++-
T Consensus 199 --GG~k~~~~~~L~~v~~ai~aGa~Gv~ 224 (264)
T PRK08227 199 --GGKKLPERDALEMCYQAIDEGASGVD 224 (264)
T ss_pred --CCCCCCHHHHHHHHHHHHHcCCceee
Confidence 54443335567777788899998864
No 207
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=33.57 E-value=1.8e+02 Score=32.06 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=54.3
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCc--------chhhhhhhccCCC
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP--------SAAVDCFAHLGKN 401 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a--------~~~~~~~~~~~~~ 401 (811)
.++++++|+.|..|++ ++.+ .++.+++.+.| +|+|+..-.+.- ...+.....
T Consensus 99 ~~~i~~lk~~g~~v~~-~v~s------------~~~a~~a~~~G---aD~Ivv~g~eagGh~g~~~~~~ll~~v~~---- 158 (307)
T TIGR03151 99 GKYIPRLKENGVKVIP-VVAS------------VALAKRMEKAG---ADAVIAEGMESGGHIGELTTMALVPQVVD---- 158 (307)
T ss_pred HHHHHHHHHcCCEEEE-EcCC------------HHHHHHHHHcC---CCEEEEECcccCCCCCCCcHHHHHHHHHH----
Confidence 4599999999999886 5543 37888999999 999986433111 111111111
Q ss_pred ccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccc
Q 003550 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPV 443 (811)
Q Consensus 402 ~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DV 443 (811)
.-+.-||+-.|-.. -..+.+|++.|||+|-+.-
T Consensus 159 ---~~~iPviaaGGI~~------~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 159 ---AVSIPVIAAGGIAD------GRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred ---HhCCCEEEECCCCC------HHHHHHHHHcCCCEeecch
Confidence 11233677766432 3457778889999987655
No 208
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.46 E-value=1.2e+02 Score=30.35 Aligned_cols=8 Identities=75% Similarity=1.406 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 003550 757 TEPPLPPV 764 (811)
Q Consensus 757 ~~~p~~~~ 764 (811)
+.||+||.
T Consensus 45 t~p~~pP~ 52 (163)
T PF06679_consen 45 TSPPLPPG 52 (163)
T ss_pred CCCCCCCC
Confidence 34555554
No 209
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.45 E-value=4.3e+02 Score=32.09 Aligned_cols=163 Identities=13% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHH-HhhhHHHHHh-hcccccCCCcccccCCCcccCCCChHHH
Q 003550 256 PEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIV 333 (811)
Q Consensus 256 f~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~-l~~~L~~i~~-~a~gi~~~~~~i~~~~~~~~l~~~~~~V 333 (811)
-.++-|+.+++..| ++++..++-+.+.+.. ..|.+ +.. .+++. ...|+.+.+-+ ++-+....-..-+
T Consensus 61 dpwerl~~~r~~~p--nt~lqmL~Rg~N~vGy---~~~~d~vv~--~~v~~a~~~Gidv~Rif----d~lnd~~n~~~~i 129 (596)
T PRK14042 61 DPWSRLRQLRQALP--NTQLSMLLRGQNLLGY---RNYADDVVR--AFVKLAVNNGVDVFRVF----DALNDARNLKVAI 129 (596)
T ss_pred CHHHHHHHHHHhCC--CCceEEEecccccccc---ccCChHHHH--HHHHHHHHcCCCEEEEc----ccCcchHHHHHHH
Confidence 45788999999998 7888765544443321 12221 111 13332 34555543221 1112222223468
Q ss_pred HHHHHcCCeEEE---EecCCCCCcccCCCCCh-HHHHHHHHHcCCCccCeEe-ccC-----CCCcchhhhhhhccCCCcc
Q 003550 334 LDAHKERLEVFA---SNFANDIPISFNYSYDP-LTEYLSFIDNGDFSVDGVL-SDF-----PLTPSAAVDCFAHLGKNAS 403 (811)
Q Consensus 334 ~~ah~~Gl~V~~---Wtv~n~~~~~~~~~~D~-~~e~~~~i~~G~~~VDgIi-TD~-----P~~a~~~~~~~~~~~~~~~ 403 (811)
+.+++.|+.+.+ +|... -|..|- .+-.+++.+.| +|.|. -|- |..+.+.++.... . .
T Consensus 130 ~~~k~~G~~~~~~i~yt~sp------~~t~e~~~~~ak~l~~~G---ad~I~IkDtaG~l~P~~v~~lv~alk~---~-~ 196 (596)
T PRK14042 130 DAIKSHKKHAQGAICYTTSP------VHTLDNFLELGKKLAEMG---CDSIAIKDMAGLLTPTVTVELYAGLKQ---A-T 196 (596)
T ss_pred HHHHHcCCEEEEEEEecCCC------CCCHHHHHHHHHHHHHcC---CCEEEeCCcccCCCHHHHHHHHHHHHh---h-c
Confidence 999999998755 44421 122222 23345577788 88764 343 3333333322211 1 1
Q ss_pred ccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccC
Q 003550 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKD 448 (811)
Q Consensus 404 ~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKD 448 (811)
.-+.-+-+|.- .....+.+.+|++.|||+|++-+.-=.-
T Consensus 197 -~ipi~~H~Hnt-----~Gla~an~laAieaGad~iD~ai~glGg 235 (596)
T PRK14042 197 -GLPVHLHSHST-----SGLASICHYEAVLAGCNHIDTAISSFSG 235 (596)
T ss_pred -CCEEEEEeCCC-----CCcHHHHHHHHHHhCCCEEEeccccccC
Confidence 11233445542 3445566667788999999887654333
No 210
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.28 E-value=51 Score=33.85 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=29.6
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCeeecccc
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVq 444 (811)
+..+||..|.--|.......+|++.|..+|+.|+-
T Consensus 31 L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 31 LKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH
Confidence 35678888888899999999999999999988874
No 211
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=32.36 E-value=2e+02 Score=31.09 Aligned_cols=135 Identities=23% Similarity=0.279 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHH----HHhc----cCc--eEEEEEccccchhchHhHH-HHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMK----LREK----TSY--ELVYKVKENIRDALNQTIE-DIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~----lk~~----p~~--~~~~l~~~~~~d~~~~~l~-~i~~~a~~v 629 (811)
-+.++-+.|...|+. +|-+.|++...-.. ||+. |++ +.+|.+..+.+.+...+++ +.+.-|+.+
T Consensus 184 RV~aIk~aL~~~~l~-----~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~~~R~la~rA~erD~aEGAD~l 258 (340)
T KOG2794|consen 184 RVGAIKQALDAEGLQ-----KVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPANSRGLALRARERDVAEGADIL 258 (340)
T ss_pred hHHHHHHHHHHhccc-----ceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCCchHHHHHHHHHhhhhccCceE
Confidence 356778888888886 88888877665544 3432 444 4566665554443333343 455555554
Q ss_pred ccccceeecCCccccCCCHHHHHHHHHc--CCcEEEEecCCccccccc----ccCCChHH--HHHHHHHhcCCCEEEeCC
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQSF--KLPVYVETFSNEFVSQAW----DFFSDPTV--EINTYYEGAGIDGVITEF 701 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~~--Gl~V~vwtvnne~~~~~~----d~~~D~~~--e~~~~l~~~GVDGIiTD~ 701 (811)
-+ -|.. ..-++++.+++. .+++.+|-|..|+.++-. ..++-... |...-+..+|.|.|+|=|
T Consensus 259 mV-----KPg~-----pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIlTYf 328 (340)
T KOG2794|consen 259 MV-----KPGL-----PYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIILTYF 328 (340)
T ss_pred Ee-----cCCC-----cHHHHHHHHHhcCCCCceEEEEecchHHHHHHHHhcccccHHHHHHHHHHHHHhcCCcEEEeec
Confidence 33 2221 123688888776 478999999988643211 11111111 222233589999999999
Q ss_pred hHHHHHHHH
Q 003550 702 PMTAARYRR 710 (811)
Q Consensus 702 P~~~~~~~~ 710 (811)
-..+..++.
T Consensus 329 apq~l~~L~ 337 (340)
T KOG2794|consen 329 APQLLTWLC 337 (340)
T ss_pred cHHHHHHhh
Confidence 888888763
No 212
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=32.33 E-value=2.6e+02 Score=28.53 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=70.5
Q ss_pred eEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHH-------HHHHHhc--cCceEEEEEccccc
Q 003550 542 GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSV-------LMKLREK--TSYELVYKVKENIR 612 (811)
Q Consensus 542 gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~-------L~~lk~~--p~~~~~~l~~~~~~ 612 (811)
.+.|++....... ..+...+.+.+++++... ++++|.=..... ...+++. .++.+++ +.- +
T Consensus 85 ~l~ini~~~~l~~----~~~~~~~~~~l~~~~~~~---~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~l--d~~-g 154 (240)
T cd01948 85 RLSVNLSARQLRD----PDFLDRLLELLAETGLPP---RRLVLEITESALIDDLEEALATLRRLRALGVRIAL--DDF-G 154 (240)
T ss_pred EEEEECCHHHhCC----cHHHHHHHHHHHHcCCCH---HHEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEE--eCC-C
Confidence 5666766554432 246667777888777763 356555332222 2233333 3455442 210 0
Q ss_pred hhchHhHHHHHHh-hhhhccccceeecCC--ccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHH
Q 003550 613 DALNQTIEDIKKF-ADSVVLSKESVYPLN--SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYY 689 (811)
Q Consensus 613 d~~~~~l~~i~~~-a~~v~~~~~~i~p~~--~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l 689 (811)
.....++.+..+ .+.|-++...+.... ......-..++..++..|+.|.+-.|.++. ...++
T Consensus 155 -~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~--------------~~~~~ 219 (240)
T cd01948 155 -TGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEE--------------QLELL 219 (240)
T ss_pred -CcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHH--------------HHHHH
Confidence 011223333322 333333322221110 000111246788999999999999999884 56666
Q ss_pred HhcCCCEEEeCC
Q 003550 690 EGAGIDGVITEF 701 (811)
Q Consensus 690 ~~~GVDGIiTD~ 701 (811)
+++|||.+.-++
T Consensus 220 ~~~gi~~~QG~~ 231 (240)
T cd01948 220 RELGCDYVQGYL 231 (240)
T ss_pred HHcCCCeeeece
Confidence 799999887554
No 213
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.15 E-value=2.1e+02 Score=30.73 Aligned_cols=153 Identities=15% Similarity=0.260 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHhcCCCCcceeeeecCCCc--cCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCCcccCC--CC
Q 003550 255 SPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLYLL--PH 329 (811)
Q Consensus 255 Sf~~~~L~~l~~~~~~~~~~lv~~~~~~~~--~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~~~~l~--~~ 329 (811)
+++++.++.+++.. ..|+.. ++.+.. +-. +...+..|...+...++. ++|+.+ ..+.+ ++.+. .-
T Consensus 37 TPS~g~i~~~~~~~---~ipv~v-MIRPR~gdF~Y-s~~E~~~M~~di~~~~~~GadGvV~--G~L~~---dg~vD~~~~ 106 (248)
T PRK11572 37 TPSLGVLKSVRERV---TIPVHP-IIRPRGGDFCY-SDGEFAAMLEDIATVRELGFPGLVT--GVLDV---DGHVDMPRM 106 (248)
T ss_pred CCCHHHHHHHHHhc---CCCeEE-EEecCCCCCCC-CHHHHHHHHHHHHHHHHcCCCEEEE--eeECC---CCCcCHHHH
Confidence 58889999988865 345432 333321 111 112233333344444443 555432 11221 11111 11
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc-CCCCcchhhhhhhccCCCccccccc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD-FPLTPSAAVDCFAHLGKNASKSANL 408 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD-~P~~a~~~~~~~~~~~~~~~~~~~p 408 (811)
..+++.|+ |+ -|||... ++...||.+.++++++.| +|.|+|- -+..+.+-+.....+-.... ..
T Consensus 107 ~~Li~~a~--~~---~vTFHRA----fD~~~d~~~al~~l~~lG---~~rILTSGg~~~a~~g~~~L~~lv~~a~---~~ 171 (248)
T PRK11572 107 RKIMAAAG--PL---AVTFHRA----FDMCANPLNALKQLADLG---VARILTSGQQQDAEQGLSLIMELIAASD---GP 171 (248)
T ss_pred HHHHHHhc--CC---ceEEech----hhccCCHHHHHHHHHHcC---CCEEECCCCCCCHHHHHHHHHHHHHhcC---CC
Confidence 35666663 44 4788764 445568999999999999 9999997 34445555555444422111 12
Q ss_pred eeecCCCCCCCCCCchHHHHHHHHHCCCCee
Q 003550 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (811)
Q Consensus 409 lIIAHRGasg~~PENTl~Af~~Ai~~Gad~I 439 (811)
.|++ ++|.-++|-.. + .+.|+..+
T Consensus 172 ~Im~---GgGV~~~Nv~~-l---~~tG~~~~ 195 (248)
T PRK11572 172 IIMA---GAGVRLSNLHK-F---LDAGVREV 195 (248)
T ss_pred EEEe---CCCCCHHHHHH-H---HHcCCCEE
Confidence 2333 35677888433 4 25788553
No 214
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.29 E-value=3.1e+02 Score=29.23 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHHHHHHhhhcCceEEec-CCHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcc
Q 003550 238 RSFVLSVSRSVVVNYISS-PEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDY 316 (811)
Q Consensus 238 ~~~l~~~lk~~~~~~isS-f~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~ 316 (811)
-..+.+..++.|+.+++| |+.+.+..+.+.. .+.+- .+++-..
T Consensus 58 ~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~----~~~~K----------------------------IaS~dl~---- 101 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFSTPFDEESVDFLEELG----VPAYK----------------------------IASGDLT---- 101 (241)
T ss_dssp HHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-----SEEE----------------------------E-GGGTT----
T ss_pred HHHHHHHHHHcCCEEEECCCCHHHHHHHHHcC----CCEEE----------------------------ecccccc----
Confidence 356788888999987666 7888888876542 22221 1222111
Q ss_pred cccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHH---HH-HcCCCccCeE----eccCCCCc
Q 003550 317 IWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS---FI-DNGDFSVDGV----LSDFPLTP 388 (811)
Q Consensus 317 i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~---~i-~~G~~~VDgI----iTD~P~~a 388 (811)
+..+++.+-+.|+.|..+|=.. ..+|+.+ ++ ..| ..+-+ ++.||...
T Consensus 102 ------------n~~lL~~~A~tgkPvIlSTG~s-----------tl~EI~~Av~~~~~~~--~~~l~llHC~s~YP~~~ 156 (241)
T PF03102_consen 102 ------------NLPLLEYIAKTGKPVILSTGMS-----------TLEEIERAVEVLREAG--NEDLVLLHCVSSYPTPP 156 (241)
T ss_dssp -------------HHHHHHHHTT-S-EEEE-TT-------------HHHHHHHHHHHHHHC--T--EEEEEE-SSSS--G
T ss_pred ------------CHHHHHHHHHhCCcEEEECCCC-----------CHHHHHHHHHHHHhcC--CCCEEEEecCCCCCCCh
Confidence 1347888888899999988332 2344444 44 333 13333 46777765
Q ss_pred chh-hhhhhccCCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccC
Q 003550 389 SAA-VDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKD 448 (811)
Q Consensus 389 ~~~-~~~~~~~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKD 448 (811)
-+. ++....+. +.-+..| |+|+.-...+. --.|+.+||.+||-=+-+.|+
T Consensus 157 e~~NL~~i~~L~-----~~f~~~v---G~SDHt~g~~~--~~~AvalGA~vIEKHfTldr~ 207 (241)
T PF03102_consen 157 EDVNLRVIPTLK-----ERFGVPV---GYSDHTDGIEA--PIAAVALGARVIEKHFTLDRN 207 (241)
T ss_dssp GG--TTHHHHHH-----HHSTSEE---EEEE-SSSSHH--HHHHHHTT-SEEEEEB-S-TT
T ss_pred HHcChHHHHHHH-----HhcCCCE---EeCCCCCCcHH--HHHHHHcCCeEEEEEEECCCC
Confidence 433 11222221 1112334 88876665433 337889999999976555443
No 215
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.29 E-value=54 Score=40.53 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHcCCCCcEEEeeeee--ecCCcEEEecCCCCCCCcch
Q 003550 105 PDSSSIAYSLTLITSAPSVILWCDVQL--TKDEAGICFPDLKLDNASNI 151 (811)
Q Consensus 105 PENTl~A~~~A~~~g~~~~~vE~DVql--TkDg~~v~~HD~~l~rtT~~ 151 (811)
.-+|.+-|+.++-.|+. .||+|+|= ++|+.+|+-|..++ ||+|
T Consensus 340 g~sSvEmYRQvLLsGcR--CVELDcWdgk~~d~EPvITHG~tm--~teI 384 (1189)
T KOG1265|consen 340 GKSSVEMYRQVLLSGCR--CVELDCWDGKGEDEEPVITHGFTM--TTEI 384 (1189)
T ss_pred CcchHHHHHHHHHhcCc--eEEeeeecCCCCCCCceeecccch--hhhh
Confidence 34599999999999999 99999995 67888999999988 6655
No 216
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=30.79 E-value=3.4e+02 Score=29.65 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=75.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HH----HHH
Q 003550 526 KLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SV----LMK 594 (811)
Q Consensus 526 TL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~----L~~ 594 (811)
++.|+|+.+++.+-.+ --+++- +.+...+++++-++.+ ..|+||-... +. ++.
T Consensus 4 ~~~~ll~~A~~~~yAV-~AfN~~---------n~e~~~avi~AAe~~~------sPvIlq~~~~~~~~~~~~~~~~~~~~ 67 (287)
T PF01116_consen 4 NMKELLKKAKEGGYAV-PAFNVY---------NLETARAVIEAAEELN------SPVILQISPSEVKYMGLEYLAAMVKA 67 (287)
T ss_dssp HHHHHHHHHHHHT-BE-EEEE-S---------SHHHHHHHHHHHHHTT------S-EEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeE-EEEeeC---------CHHHHHHHHHHHHHhC------CCEEEEcchhhhhhhhHHHHHHHHHH
Confidence 5778888888763211 122322 1235566777766643 3677775431 11 112
Q ss_pred HHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEEe---c
Q 003550 595 LREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVET---F 666 (811)
Q Consensus 595 lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vwt---v 666 (811)
+.+.-++|+++-.+... .++.+++-.+. + +++++-..+ ..+..+.++|+.+|+.|+.|=+.. .
T Consensus 68 ~a~~~~vPValHLDH~~------~~e~i~~ai~~-G--ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 68 AAEEASVPVALHLDHGK------DFEDIKRAIDA-G--FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp HHHHSTSEEEEEEEEE-------SHHHHHHHHHH-T--SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred HHHHcCCCEEeecccCC------CHHHHHHHHHh-C--cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeee
Confidence 22336789998888742 13333322111 1 233321111 123346789999999999985442 1
Q ss_pred CCc-cccc---ccccCCChHHHHHHHHHhcCCCEE
Q 003550 667 SNE-FVSQ---AWDFFSDPTVEINTYYEGAGIDGV 697 (811)
Q Consensus 667 nne-~~~~---~~d~~~D~~~e~~~~l~~~GVDGI 697 (811)
..+ .... .-.++-||. +..+|+++-|||.+
T Consensus 139 g~ed~~~~~~~~~~~~TdP~-~a~~Fv~~TgvD~L 172 (287)
T PF01116_consen 139 GKEDGIESEEETESLYTDPE-EAKEFVEETGVDAL 172 (287)
T ss_dssp SSCTTCSSSTT-TTCSSSHH-HHHHHHHHHTTSEE
T ss_pred ccCCCccccccccccccCHH-HHHHHHHHhCCCEE
Confidence 111 1111 135566777 57888888888875
No 217
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.43 E-value=1.5e+02 Score=33.44 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHH
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~ 709 (811)
.+.|+.+|++|.++++=. |--.. . -..+...++...+.+.|||+||--+|..+.-..
T Consensus 52 ~e~i~~ah~~gkk~~V~~-N~~~~--~--~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~ 108 (347)
T COG0826 52 AEAVELAHSAGKKVYVAV-NTLLH--N--DELETLERYLDRLVELGVDAVIVADPGLIMLAR 108 (347)
T ss_pred HHHHHHHHHcCCeEEEEe-ccccc--c--chhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHH
Confidence 478999999999987753 22110 0 000111233444458999999999999776544
No 218
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=29.91 E-value=92 Score=38.04 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 003550 739 DYLPPAEAPNPILTEAAVTEPPL 761 (811)
Q Consensus 739 ~~~~p~~~p~~~~~~~~~~~~p~ 761 (811)
.++||.+||+|.-..+|-.-|||
T Consensus 279 ~s~ppppap~p~~~~~~a~p~p~ 301 (830)
T KOG1923|consen 279 GSGPPPPAPLPHTAQSDAAPSPL 301 (830)
T ss_pred CCCCCCCCCCCCcccccCCCCCC
Confidence 44556666666555555433333
No 219
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.48 E-value=35 Score=36.96 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=65.2
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhh-hhhhccCCCccccccc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV-DCFAHLGKNASKSANL 408 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~-~~~~~~~~~~~~~~~p 408 (811)
+++|+-|++.|+.|..|.-.+......++...-.+.+.++-++| |.||=+||-..-.+.. +.+..+- ...-+.+.
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~G---v~GvKidF~~~d~Q~~v~~y~~i~-~~AA~~~L 151 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWG---VKGVKIDFMDRDDQEMVNWYEDIL-EDAAEYKL 151 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCT---EEEEEEE--SSTSHHHHHHHHHHH-HHHHHTT-
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcC---CCEEeeCcCCCCCHHHHHHHHHHH-HHHHHcCc
Confidence 67999999999999999876541111112122357788899999 9999999988765443 2332221 12234467
Q ss_pred eeecCCC-----CCCCCC-CchHHHHHHHHHCCCCeeecccccccCCcEEEeecCcccc
Q 003550 409 LVISKNG-----ASGDYP-SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (811)
Q Consensus 409 lIIAHRG-----asg~~P-ENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~r 461 (811)
+|.-|.- -+--|| .=| ..|+.+.|..-. +.++..=-.|+.+|-=
T Consensus 152 mvnfHg~~kPtG~~RTyPN~mT--------~EgVrG~E~~~~-~~~~~~~p~h~~~lPF 201 (273)
T PF10566_consen 152 MVNFHGATKPTGLRRTYPNLMT--------REGVRGQEYNKW-SGDGGNPPEHNTTLPF 201 (273)
T ss_dssp EEEETTS---TTHHHCSTTEEE--------E--S--GGGGGT-T-TTS-HCCHHCTCCC
T ss_pred EEEecCCcCCCcccccCccHHH--------HHHhhhhhhccc-ccCCCCCCcceeeccc
Confidence 8888853 223455 222 347777787332 2445555567755543
No 220
>PRK15452 putative protease; Provisional
Probab=29.42 E-value=1.1e+02 Score=35.66 Aligned_cols=55 Identities=11% Similarity=-0.035 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHH---HHHHhcCCCEEEeCChHHHHHHHH
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEIN---TYYEGAGIDGVITEFPMTAARYRR 710 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~---~~l~~~GVDGIiTD~P~~~~~~~~ 710 (811)
.+.|+.+|++|.+||+- +|.-. .+ +...++. ..+.+.||||||.-.|..+..+++
T Consensus 49 ~eav~~ah~~g~kvyvt-~n~i~----~e---~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke 106 (443)
T PRK15452 49 ALGINEAHALGKKFYVV-VNIAP----HN---AKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVRE 106 (443)
T ss_pred HHHHHHHHHcCCEEEEE-ecCcC----CH---HHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHH
Confidence 35788999999999875 33221 11 1112222 333479999999999999877765
No 221
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.34 E-value=6.2e+02 Score=27.56 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HHH----HHHHhccCceEEEEEccccchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTDS-------SVL----MKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~L----~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v 629 (811)
...+++++-++.+ ..|+||-... +.+ ..+.+.-++|+++-++... ..+.+.+- +
T Consensus 25 ~~~avi~AAe~~~------sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~------~~~~i~~a---i 89 (276)
T cd00947 25 TLKAILEAAEETR------SPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGS------SFELIKRA---I 89 (276)
T ss_pred HHHHHHHHHHHhC------CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC------CHHHHHHH---H
Confidence 4456666655543 3567765432 111 1222225788988888752 12333221 1
Q ss_pred ccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 630 VLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 630 ~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
...+++++-..+ ..+..+.++|+.+|+.|+.|=+.
T Consensus 90 ~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaE 129 (276)
T cd00947 90 RAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAE 129 (276)
T ss_pred HhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 112233332211 12334678999999999998433
No 222
>PRK00208 thiG thiazole synthase; Reviewed
Probab=28.71 E-value=1.7e+02 Score=31.21 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=31.9
Q ss_pred hHHHHHHHHc---CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEec
Q 003550 330 TTIVLDAHKE---RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (811)
Q Consensus 330 ~~~V~~ah~~---Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiT 382 (811)
.+.|+.|+.+ |+.|+.++.++ ..+.+++.+.| ++.|..
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~~d------------~~~ak~l~~~G---~~~vmP 150 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPYCTDD------------PVLAKRLEEAG---CAAVMP 150 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHcC---CCEeCC
Confidence 5789999999 99999998653 47889999999 999943
No 223
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=28.36 E-value=2.9e+02 Score=27.93 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCcEEEEe-----cCCcccccccccCCChHHHHHHHHHh-cCCCEEEeCChHHHHHHHHh
Q 003550 648 TDIVQRLQSFKLPVYVET-----FSNEFVSQAWDFFSDPTVEINTYYEG-AGIDGVITEFPMTAARYRRN 711 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwt-----vnne~~~~~~d~~~D~~~e~~~~l~~-~GVDGIiTD~P~~~~~~~~~ 711 (811)
++.++.++++|..|++.. +.+.. +..+|+.+ .+.|||||=.+......++.
T Consensus 38 k~ivk~lK~~gK~vfiHvDLv~Gl~~~e-------------~~i~fi~~~~~pdGIISTk~~~i~~Akk~ 94 (181)
T COG1954 38 KEIVKKLKNRGKTVFIHVDLVEGLSNDE-------------VAIEFIKEVIKPDGIISTKSNVIKKAKKL 94 (181)
T ss_pred HHHHHHHHhCCcEEEEEeHHhcccCCch-------------HHHHHHHHhccCCeeEEccHHHHHHHHHc
Confidence 578999999999998773 33332 35566644 55999999999998887754
No 224
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=28.35 E-value=1.8e+02 Score=31.16 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=34.5
Q ss_pred ccCCCC-hHHHHHHHHc---CCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEec
Q 003550 324 LYLLPH-TTIVLDAHKE---RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (811)
Q Consensus 324 ~~l~~~-~~~V~~ah~~---Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiT 382 (811)
.||.++ .+.++.|+++ |+.|+.++.++ ..+.+++.+.| ++.|..
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd------------~~~ar~l~~~G---~~~vmP 150 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDD------------PVLAKRLEDAG---CAAVMP 150 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHcC---CCEeCC
Confidence 344443 5789999999 99999998653 47889999999 999943
No 225
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=28.17 E-value=52 Score=35.57 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHCCCCeeecccccccCCcEEEeecC
Q 003550 422 SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI 457 (811)
Q Consensus 422 ENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~ 457 (811)
-|=...+..+++.|++++|+||+... +.+.++|-.
T Consensus 41 ~nQ~~sI~~QL~~GvR~LdLdv~~~~-~~l~v~Hg~ 75 (267)
T cd08590 41 PNQELSITDQLDLGARFLELDVHWTT-GDLRLCHGG 75 (267)
T ss_pred cccCcCHHHHHhhCCcEEEEeeeeCC-CCEEEEccC
Confidence 45566888999999999999999865 556666763
No 226
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.60 E-value=5.5e+02 Score=31.16 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHH
Q 003550 257 EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (811)
Q Consensus 257 ~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~a 336 (811)
+++.++.+++..| ++++..++-+.+.+.. ..|.+=.....--+....|+..-.-+..-.+-.+. ...++.|
T Consensus 63 p~e~lr~l~~~~~--~~~lqml~Rg~n~vg~---~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~----~~ai~~a 133 (593)
T PRK14040 63 PWERLRELKKAMP--NTPQQMLLRGQNLLGY---RHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNL----ETALKAV 133 (593)
T ss_pred HHHHHHHHHHhCC--CCeEEEEecCcceecc---ccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHH----HHHHHHH
Q ss_pred HHcCCeE---EEEecCCCCCcccCCCCCh---HHHHHHHHHcCCCccCeE-eccC-----CCCcchhhhhhhccCCCccc
Q 003550 337 HKERLEV---FASNFANDIPISFNYSYDP---LTEYLSFIDNGDFSVDGV-LSDF-----PLTPSAAVDCFAHLGKNASK 404 (811)
Q Consensus 337 h~~Gl~V---~~Wtv~n~~~~~~~~~~D~---~~e~~~~i~~G~~~VDgI-iTD~-----P~~a~~~~~~~~~~~~~~~~ 404 (811)
+++|+.+ .++|+... +++ .+-.+.+.+.| +|.| +.|- |..+.+.++.....-
T Consensus 134 k~~G~~~~~~i~yt~~p~--------~~~~~~~~~a~~l~~~G---ad~i~i~Dt~G~l~P~~~~~lv~~lk~~~----- 197 (593)
T PRK14040 134 RKVGAHAQGTLSYTTSPV--------HTLQTWVDLAKQLEDMG---VDSLCIKDMAGLLKPYAAYELVSRIKKRV----- 197 (593)
T ss_pred HHcCCeEEEEEEEeeCCc--------cCHHHHHHHHHHHHHcC---CCEEEECCCCCCcCHHHHHHHHHHHHHhc-----
Q ss_pred cccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccc
Q 003550 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPV 443 (811)
Q Consensus 405 ~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DV 443 (811)
.-..-+-+|. -.++..+.+..|++.|||+|++-|
T Consensus 198 ~~pi~~H~Hn-----t~GlA~An~laAieAGa~~vD~ai 231 (593)
T PRK14040 198 DVPLHLHCHA-----TTGLSTATLLKAIEAGIDGVDTAI 231 (593)
T ss_pred CCeEEEEECC-----CCchHHHHHHHHHHcCCCEEEecc
No 227
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.45 E-value=2.4e+02 Score=26.34 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCC-cEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe--CChHHHHHHHH
Q 003550 648 TDIVQRLQSFKL-PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT--EFPMTAARYRR 710 (811)
Q Consensus 648 ~~~V~~~~~~Gl-~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT--D~P~~~~~~~~ 710 (811)
.++++.+++.|. .+.+|.-.+. +..++..+. ++|+|++|. -.++....|++
T Consensus 68 ~~~~~~L~~~~~~~i~i~~GG~~-----------~~~~~~~~~-~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 68 PEVIELLRELGAGDILVVGGGII-----------PPEDYELLK-EMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHhcCCCCCEEEEECCC-----------CHHHHHHHH-HCCCCEEECCCCCHHHHHHHHh
Confidence 467888888877 4445544332 234577776 899999985 44555555543
No 228
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=27.43 E-value=79 Score=27.88 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHHHHhh
Q 003550 789 QPKVATGIFLSTMAMLLITLLL 810 (811)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~ 810 (811)
-+...-..+++.|++||||.||
T Consensus 19 ~~~l~pn~lMtILivLVIIiLl 40 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLVIIILL 40 (85)
T ss_pred ccccChhHHHHHHHHHHHHHHH
Confidence 3556677788887777766655
No 229
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.26 E-value=7.3e+02 Score=25.84 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChH---HHHHHHhc-cCce
Q 003550 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS---VLMKLREK-TSYE 602 (811)
Q Consensus 527 L~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~---~L~~lk~~-p~~~ 602 (811)
..++++.+.+. ++.--+...+.. -.-.+.+.|.+.|.. -+=|.--.+. .++.+++. |+..
T Consensus 5 ~~~~~~~l~~~----~~iaV~r~~~~~-------~a~~i~~al~~~Gi~-----~iEitl~~~~~~~~I~~l~~~~p~~~ 68 (212)
T PRK05718 5 KTSIEEILRAG----PVVPVIVINKLE-------DAVPLAKALVAGGLP-----VLEVTLRTPAALEAIRLIAKEVPEAL 68 (212)
T ss_pred HHHHHHHHHHC----CEEEEEEcCCHH-------HHHHHHHHHHHcCCC-----EEEEecCCccHHHHHHHHHHHCCCCE
Confidence 34666777765 555555543322 123567777777775 3333333333 45555555 6533
Q ss_pred EEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChH
Q 003550 603 LVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPT 682 (811)
Q Consensus 603 ~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~ 682 (811)
++- +.. .+++..+.... .+. ++++.. ...+++++.+++.|+.+.+-... |+
T Consensus 69 IGA--GTV---l~~~~a~~a~~----aGA--~FivsP-----~~~~~vi~~a~~~~i~~iPG~~T-------------pt 119 (212)
T PRK05718 69 IGA--GTV---LNPEQLAQAIE----AGA--QFIVSP-----GLTPPLLKAAQEGPIPLIPGVST-------------PS 119 (212)
T ss_pred EEE--eec---cCHHHHHHHHH----cCC--CEEECC-----CCCHHHHHHHHHcCCCEeCCCCC-------------HH
Confidence 321 111 11122222111 122 223221 13468999999999998755432 23
Q ss_pred HHHHHHHHhcCCCEEEeCChHHH
Q 003550 683 VEINTYYEGAGIDGVITEFPMTA 705 (811)
Q Consensus 683 ~e~~~~l~~~GVDGIiTD~P~~~ 705 (811)
|+.+.. ++|++.|-- ||...
T Consensus 120 -Ei~~a~-~~Ga~~vKl-FPa~~ 139 (212)
T PRK05718 120 -ELMLGM-ELGLRTFKF-FPAEA 139 (212)
T ss_pred -HHHHHH-HCCCCEEEE-ccchh
Confidence 577776 899999888 88764
No 230
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=26.70 E-value=7.2e+02 Score=27.18 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh--------H----H
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS--------S----V 591 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~--------~----~ 591 (811)
+.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-... . .
T Consensus 3 lv~~~~lL~~A~~~~yAV~-AfN~~n---------~e~~~avi~AAe~~~------sPvIiq~~~~~~~~~~~~~~~~~~ 66 (285)
T PRK07709 3 LVSMKEMLNKALEGKYAVG-QFNMNN---------LEWTQAILAAAEEEK------SPVILGVSEGAARHMTGFKTVVAM 66 (285)
T ss_pred CCcHHHHHHHHHHCCceEE-EEEECC---------HHHHHHHHHHHHHHC------CCEEEEcCcchhhhcCCHHHHHHH
Confidence 5688999999988632111 223322 124556666665543 3677775331 1 1
Q ss_pred HHHHHhcc--CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 592 LMKLREKT--SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 592 L~~lk~~p--~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
++.+.+.- .+|+++-++... .++.+.+- +..-+++++-..+ ..+..+.++|+.+|..|+.|=+.
T Consensus 67 ~~~~a~~~~~~VPV~lHLDHg~------~~e~i~~a---i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaE 137 (285)
T PRK07709 67 VKALIEEMNITVPVAIHLDHGS------SFEKCKEA---IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAE 137 (285)
T ss_pred HHHHHHHcCCCCcEEEECCCCC------CHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 22223332 378998888741 23333321 2222344332211 12334678999999999998333
Q ss_pred e--c-CCccc-ccccccCCChHHHHHHHHHhcCCCEEE
Q 003550 665 T--F-SNEFV-SQAWDFFSDPTVEINTYYEGAGIDGVI 698 (811)
Q Consensus 665 t--v-nne~~-~~~~d~~~D~~~e~~~~l~~~GVDGIi 698 (811)
. + ..+.- ...-.++-||. |...|+++.|||.+-
T Consensus 138 lG~igg~ed~~~~~~~~yT~pe-eA~~Fv~~TgvD~LA 174 (285)
T PRK07709 138 LGTVGGQEDDVIAEGVIYADPA-ECKHLVEATGIDCLA 174 (285)
T ss_pred EeccCCccCCcccccccCCCHH-HHHHHHHHhCCCEEE
Confidence 1 1 22210 00112345554 567777667777543
No 231
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.67 E-value=1.7e+02 Score=32.94 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeE---EEEecCCCCCcccCCCCCh---HHHHHHHHHcCCCccCeE-eccC-----CCCcchhhhhhhcc
Q 003550 331 TIVLDAHKERLEV---FASNFANDIPISFNYSYDP---LTEYLSFIDNGDFSVDGV-LSDF-----PLTPSAAVDCFAHL 398 (811)
Q Consensus 331 ~~V~~ah~~Gl~V---~~Wtv~n~~~~~~~~~~D~---~~e~~~~i~~G~~~VDgI-iTD~-----P~~a~~~~~~~~~~ 398 (811)
+.|+.|+++|++| +..+|..+ |....|| .+-++.+.+.| +|.| +.|- |....+.++.....
T Consensus 166 ~~v~~Ak~~Gl~v~~~is~~fg~p----~~~r~~~~~l~~~~~~~~~~G---ad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 166 EVALAAKKHSIPVRGYVSCVVGCP----IEGPVPPSKVAYVAKELYDMG---CYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHcCCeEEEEEEeeecCC----ccCCCCHHHHHHHHHHHHHcC---CCEEEecCCcCCcCHHHHHHHHHHHHHh
Q ss_pred CCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccc
Q 003550 399 GKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPV 443 (811)
Q Consensus 399 ~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DV 443 (811)
-+....-+-.|. -.|.+..|+++|++. ||++|++-|
T Consensus 239 ----~~~~~i~~H~Hn-d~GlA~AN~lAA~~a----Ga~~vd~sv 274 (347)
T PLN02746 239 ----VPVDKLAVHFHD-TYGQALANILVSLQM----GISTVDSSV 274 (347)
T ss_pred ----CCCCeEEEEECC-CCChHHHHHHHHHHh----CCCEEEEec
No 232
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=26.62 E-value=6.3e+02 Score=28.51 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------H----HH
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------S----VL 592 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~----~L 592 (811)
+.++.|+|+.+++..-.++ -+++-+ .+...+++++-++.+ ..|+||-... . .+
T Consensus 3 lv~~k~lL~~A~~~~yaV~-AfN~~n---------~e~~~avi~AAEe~~------sPvIlq~s~~~~~~~g~~~~~~~v 66 (347)
T PRK13399 3 LITLRQLLDHAAENGYGVP-AFNVNN---------MEQILAIMEAAEATD------SPVILQASRGARKYAGDAMLRHMV 66 (347)
T ss_pred CccHHHHHHHHHHCCceEE-EEEeCC---------HHHHHHHHHHHHHhC------CCEEEECCcchhhhCCHHHHHHHH
Confidence 4678999999887631111 223222 224556666666543 3677776431 2 12
Q ss_pred HHHHhc-cCceEEEEEccccchhchHhHHHHHH----hhhhhccccceeecC------CccccCCCHHHHHHHHHcCCcE
Q 003550 593 MKLREK-TSYELVYKVKENIRDALNQTIEDIKK----FADSVVLSKESVYPL------NSAFITSATDIVQRLQSFKLPV 661 (811)
Q Consensus 593 ~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~----~a~~v~~~~~~i~p~------~~~~l~~~~~~V~~~~~~Gl~V 661 (811)
+.+.+. +.+|+++-++... ..+.+++ ..++|-++.+. .|. ....+..+.++|+.+|..|+.|
T Consensus 67 ~~~ae~~~~VPVaLHLDHg~------~~e~i~~Ai~~GFtSVMiDgS~-l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 67 LAAAEMYPDIPICLHQDHGN------SPATCQSAIRSGFTSVMMDGSL-LADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred HHHHHhcCCCcEEEECCCCC------CHHHHHHHHhcCCCEEEEeCCC-CCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 223333 4588998888752 1222222 12233232211 110 0112334678999999999998
Q ss_pred EEE
Q 003550 662 YVE 664 (811)
Q Consensus 662 ~vw 664 (811)
=+.
T Consensus 140 EaE 142 (347)
T PRK13399 140 EGE 142 (347)
T ss_pred EEE
Confidence 444
No 233
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.45 E-value=1.2e+02 Score=24.99 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.5
Q ss_pred ccchhhhhHHHHHHhcCCchhh
Q 003550 22 SLSKEEKSRTFIKRIGGAPAEL 43 (811)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ 43 (811)
|=|..|.|-.|+.|+|-.-.-.
T Consensus 4 SESDnETA~~FL~RvGr~q~~~ 25 (60)
T PF06072_consen 4 SESDNETATEFLRRVGRQQHAS 25 (60)
T ss_pred CccccccHHHHHHHHhHHHHHH
Confidence 5678899999999999765333
No 234
>PRK06852 aldolase; Validated
Probab=26.37 E-value=3.8e+02 Score=29.66 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=38.1
Q ss_pred CHHHHHHHHHcCCcEEEEecCCcccccccccCCCh--HHHHHHHHHhcCCCEEEeCCh--------HHHHHHHH
Q 003550 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDP--TVEINTYYEGAGIDGVITEFP--------MTAARYRR 710 (811)
Q Consensus 647 ~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~--~~e~~~~l~~~GVDGIiTD~P--------~~~~~~~~ 710 (811)
-.++++++|+.|+++.+|..-.... ..=..|| .+-..+...++|+|.|=|+|| +.+++...
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~---i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~ 226 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKA---VKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL 226 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcc---cCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH
Confidence 3468899999999999986532210 0000122 122334445799999999998 45666543
No 235
>PRK13561 putative diguanylate cyclase; Provisional
Probab=25.88 E-value=2.9e+02 Score=33.41 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc---CCCCcchhhhh
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD---FPLTPSAAVDC 394 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD---~P~~a~~~~~~ 394 (811)
..+++.||..|++|.|=+|.++ +++..+.+.| ||++.=- .|..+.++.+.
T Consensus 594 ~~i~~~a~~l~i~viAegVE~~------------~~~~~l~~~g---~d~~QG~~~~~P~~~~~~~~~ 646 (651)
T PRK13561 594 AAIIMLAQSLNLQVIAEGVETE------------AQRDWLLKAG---VGIAQGFLFARALPIEIFEER 646 (651)
T ss_pred HHHHHHHHHCCCcEEEecCCCH------------HHHHHHHhcC---CCEEeCCcccCCCCHHHHHHH
Confidence 4689999999999999999875 8889999999 8866544 46655555443
No 236
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.58 E-value=9.1e+02 Score=26.39 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HHHHH-H
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SVLMK-L 595 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~L~~-l 595 (811)
+.++.|+|+.++...-.+ .-+++-+ .+...+++++-++.+ ..|+||-... +.+.. +
T Consensus 3 lv~~k~iL~~A~~~~yaV-~AfNv~n---------~e~~~avi~AAee~~------sPvIlq~~~~~~~~~g~~~~~~~~ 66 (284)
T PRK12857 3 LVTVAELLKKAEKGGYAV-GAFNCNN---------MEIVQAIVAAAEAEK------SPVIIQASQGAIKYAGIEYISAMV 66 (284)
T ss_pred CCcHHHHHHHHHHcCCeE-EEEEeCC---------HHHHHHHHHHHHHhC------CCEEEEechhHhhhCCHHHHHHHH
Confidence 467899999988763111 1233322 224556666666543 3677775432 22221 2
Q ss_pred H---hccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 596 R---EKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 596 k---~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
+ +.-++|+++-.+... .++.+++..+ .-+++++-..+ ..+..+.++|+.+|..|+.|=+.
T Consensus 67 ~~~A~~~~VPValHLDH~~------~~e~i~~ai~---~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE 134 (284)
T PRK12857 67 RTAAEKASVPVALHLDHGT------DFEQVMKCIR---NGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAE 134 (284)
T ss_pred HHHHHHCCCCEEEECCCCC------CHHHHHHHHH---cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 2 235789998888752 2334433222 12233332111 12334678999999999988443
No 237
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=25.52 E-value=7.4e+02 Score=25.34 Aligned_cols=126 Identities=11% Similarity=0.030 Sum_probs=66.8
Q ss_pred CceEEeeccchhhh---hcCchHHHHHHHHhhhcCceEEec--------CCHHHHHHHHHhcCCCCcceeeeecCCCccC
Q 003550 218 PGLWLNIQHDAFYA---QHNLSMRSFVLSVSRSVVVNYISS--------PEVNFLRSIAARFRPSMTKLVFRFLGKSEIE 286 (811)
Q Consensus 218 ~~l~leiK~~~~~~---~~~~~~~~~l~~~lk~~~~~~isS--------f~~~~L~~l~~~~~~~~~~lv~~~~~~~~~~ 286 (811)
..+..|+|..+-.. ....++. .+.+.....|...++- =+.+.++.+++.. +.|++. .+ ...
T Consensus 11 ~~vIae~k~~sp~~~~~~~~~~~~-~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~--~~--~i~ 82 (217)
T cd00331 11 LGVIAEVKRASPSKGLIREDFDPV-EIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV---SLPVLR--KD--FII 82 (217)
T ss_pred ceEEEEecCCCCCCCcCCCCCCHH-HHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc---CCCEEE--CC--eec
Confidence 57888998643111 1122333 3344445556543332 2567888888865 466663 21 100
Q ss_pred CCcccchHHHhhhHHHHH-hhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHH
Q 003550 287 PTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE 365 (811)
Q Consensus 287 ~~~~~~y~~l~~~L~~i~-~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e 365 (811)
+ .+ .++... .-++++.+....+-+. .-.++++.++..|+.+.+-. .+ .+|
T Consensus 83 ---~-~~-----~v~~~~~~Gad~v~l~~~~~~~~-------~~~~~~~~~~~~g~~~~v~v-~~------------~~e 133 (217)
T cd00331 83 ---D-PY-----QIYEARAAGADAVLLIVAALDDE-------QLKELYELARELGMEVLVEV-HD------------EEE 133 (217)
T ss_pred ---C-HH-----HHHHHHHcCCCEEEEeeccCCHH-------HHHHHHHHHHHcCCeEEEEE-CC------------HHH
Confidence 0 00 112222 2356665432221100 11467888899999985543 22 378
Q ss_pred HHHHHHcCCCccCeEecc
Q 003550 366 YLSFIDNGDFSVDGVLSD 383 (811)
Q Consensus 366 ~~~~i~~G~~~VDgIiTD 383 (811)
++++.+.| +|.|...
T Consensus 134 ~~~~~~~g---~~~i~~t 148 (217)
T cd00331 134 LERALALG---AKIIGIN 148 (217)
T ss_pred HHHHHHcC---CCEEEEe
Confidence 88999998 9988554
No 238
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.49 E-value=9.7e+02 Score=27.01 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HHHHH--
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SVLMK-- 594 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~L~~-- 594 (811)
+.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-... ..+..
T Consensus 3 lv~~k~lL~~A~~~~yAVg-AfN~~n---------~e~~~avi~AAee~~------sPvIiq~s~~~~~~~g~~~~~~~~ 66 (347)
T PRK09196 3 LISLRQLLDHAAEHGYGVP-AFNVNN---------LEQVQAIMEAADETD------SPVILQASAGARKYAGEPFLRHLI 66 (347)
T ss_pred CCcHHHHHHHHHHcCceEE-EeeeCC---------HHHHHHHHHHHHHhC------CCEEEECCccHhhhCCHHHHHHHH
Confidence 4678899998887632111 222221 235566777666543 3677775332 22222
Q ss_pred --HHhc-cCceEEEEEccccchhchHhHHHHHH----hhhhhccccceee------cCCccccCCCHHHHHHHHHcCCcE
Q 003550 595 --LREK-TSYELVYKVKENIRDALNQTIEDIKK----FADSVVLSKESVY------PLNSAFITSATDIVQRLQSFKLPV 661 (811)
Q Consensus 595 --lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~----~a~~v~~~~~~i~------p~~~~~l~~~~~~V~~~~~~Gl~V 661 (811)
+.+. +.+|+++-++... +.+.+.+ ..++|-++.+... |. ...+..+.++|+.+|..|+.|
T Consensus 67 ~~~a~~~~~VPValHLDHg~------~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~-eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 67 LAAVEEYPHIPVVMHQDHGN------SPATCQRAIQLGFTSVMMDGSLKADGKTPASY-EYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC------CHHHHHHHHHcCCCEEEecCCCCcccCCCCCH-HHHHHHHHHHHHHHHHcCCeE
Confidence 2333 4588988888741 1233322 1223333221110 11 012334678999999999998
Q ss_pred EEE
Q 003550 662 YVE 664 (811)
Q Consensus 662 ~vw 664 (811)
=+.
T Consensus 140 EaE 142 (347)
T PRK09196 140 EGE 142 (347)
T ss_pred EEE
Confidence 444
No 239
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=25.39 E-value=1.4e+02 Score=35.13 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.6
Q ss_pred hcCCCEEEe
Q 003550 691 GAGIDGVIT 699 (811)
Q Consensus 691 ~~GVDGIiT 699 (811)
..|..-|+|
T Consensus 216 SsgLhHv~t 224 (574)
T PF07462_consen 216 SSGLHHVFT 224 (574)
T ss_pred hhhHHHHHH
Confidence 344443333
No 240
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=25.29 E-value=1.1e+02 Score=33.98 Aligned_cols=43 Identities=21% Similarity=-0.010 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHHcCCCCcEEEeeeeeecC--------------------CcEEEecCCCCCCCc
Q 003550 105 PDSSSIAYSLTLITSAPSVILWCDVQLTKD--------------------EAGICFPDLKLDNAS 149 (811)
Q Consensus 105 PENTl~A~~~A~~~g~~~~~vE~DVqlTkD--------------------g~~v~~HD~~l~rtT 149 (811)
.+++-..+..+++.|+. .+|+||+-..+ +-+-|+|-.++|.-|
T Consensus 43 ~~~s~~~i~~QLd~GvR--~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V~H~~~~d~~t 105 (324)
T cd08589 43 LDYSHPPLADQLDSGVR--QLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKVSHIPDLDNRN 105 (324)
T ss_pred ccCCCccHHHHHhhCcc--eEEEEEeecCCcccccccccccccccccccCCCeEEEcCCCcCCCC
Confidence 35778899999999999 99999998654 445667776665443
No 241
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.25 E-value=69 Score=34.52 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 649 ~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
++++.+|+.|+-..+|.++.+ |...+. ++|+|.|+...
T Consensus 141 emi~~A~~~gl~T~~yvf~~e--------------~A~~M~-~AGaDiiv~H~ 178 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAYVFNEE--------------QARAMA-EAGADIIVAHM 178 (268)
T ss_dssp HHHHHHHHTT-EE--EE-SHH--------------HHHHHH-HHT-SEEEEE-
T ss_pred HHHHHHHHCCCeeeeeecCHH--------------HHHHHH-HcCCCEEEecC
Confidence 799999999999999999755 477777 99999999765
No 242
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.14 E-value=8.5e+02 Score=26.61 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCCh-------HH----H
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-------SV----L 592 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~-------~~----L 592 (811)
+.++.|+|+.+++.+-.+ --+++-+ .+...+++++-++.+ ..|+||-... +. +
T Consensus 3 lv~~k~il~~A~~~~yaV-~AfN~~n---------~e~~~avi~AAee~~------sPvIiq~~~~~~~~~g~~~~~~~~ 66 (284)
T PRK09195 3 LVSTKQMLNNAQRGGYAV-PAFNIHN---------LETMQVVVETAAELH------SPVIIAGTPGTFSYAGTEYLLAIV 66 (284)
T ss_pred CCcHHHHHHHHHHcCceE-EEEEeCC---------HHHHHHHHHHHHHhC------CCEEEEcChhHHhhCCHHHHHHHH
Confidence 467889999988863211 1223322 234556666665543 3677775331 12 1
Q ss_pred HHHHhccCceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 593 MKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 593 ~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
..+.+.-++|+++-.+... +++.+++- +..-+++++-..+ ..+..+.++|+.+|..|+.|=+.
T Consensus 67 ~~~A~~~~VPV~lHLDHg~------~~e~i~~A---i~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaE 134 (284)
T PRK09195 67 SAAAKQYHHPLALHLDHHE------KFDDIAQK---VRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAE 134 (284)
T ss_pred HHHHHHCCCCEEEECCCCC------CHHHHHHH---HHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 2222336789998888742 13333322 1112233332211 12334678999999999988433
No 243
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=25.02 E-value=53 Score=32.18 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccc
Q 003550 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA 406 (811)
Q Consensus 327 ~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~ 406 (811)
..+..+...++++|..+..|..+.+ .....|..+| ..-| ++.- ......+
T Consensus 30 DCSs~V~~ALr~aG~~~~g~~~nT~------------tl~~~L~~~G---~~~I-~~~~--------------~~~~q~G 79 (145)
T PF05382_consen 30 DCSSFVYQALRAAGFKIPGSAGNTE------------TLHDWLKKNG---FKKI-SENV--------------DWNLQRG 79 (145)
T ss_pred chHHHHHHHHHHcCCCCCCCccCHH------------HHHHHHhhCC---cEEe-ccCC--------------cccccCC
Confidence 4446677888888998777655432 4455577777 2222 2110 0124567
Q ss_pred cceeecCCCCCCCCCCchHHHHHHHHHCCCCeeecccccccCCcEEEeecCccc
Q 003550 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (811)
Q Consensus 407 ~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVqlTKDGv~Vv~HD~~L~ 460 (811)
.++|.+++|.|+-.+.+|---. .-..+|.||= ..+|+.|--||..-.
T Consensus 80 DI~I~g~~g~S~G~~GHtgif~-----~~~~iIhc~y--~~~g~~~~~~~~~~~ 126 (145)
T PF05382_consen 80 DIFIWGRRGNSAGAGGHTGIFM-----DNDTIIHCNY--GANGIAINNYDWYWY 126 (145)
T ss_pred CEEEEcCCCCCCCCCCeEEEEe-----CCCcEEEecC--CCCCeEecCCCeeee
Confidence 8999999999988898885443 2356899994 889998888775443
No 244
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.59 E-value=4.4e+02 Score=28.35 Aligned_cols=138 Identities=13% Similarity=0.048 Sum_probs=76.8
Q ss_pred ccHHHHHHhh-CCCceEEeeccchhhhh---cCchHHHHHHHHhhhcCceEEec--------CCHHHHHHHHHhcCCCCc
Q 003550 206 LTVQDMARQI-KPPGLWLNIQHDAFYAQ---HNLSMRSFVLSVSRSVVVNYISS--------PEVNFLRSIAARFRPSMT 273 (811)
Q Consensus 206 ptL~evl~~~-~~~~l~leiK~~~~~~~---~~~~~~~~l~~~lk~~~~~~isS--------f~~~~L~~l~~~~~~~~~ 273 (811)
..|-++|+.. .+..+..|+|..+-... ...+.++ +.+.-+++|...||- =+.+.|+.++.... .
T Consensus 33 r~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~-ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~---~ 108 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVE-IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVD---L 108 (254)
T ss_pred ccHHHHHHhcCCCceEEEEeecCCCCCCcccccCCHHH-HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcC---C
Confidence 4677888776 34789999996542221 1223332 556666666543221 24678888888763 4
Q ss_pred ceeeeecCCCccCCCcccchHHHhhhHHHHHhh-cccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCC
Q 003550 274 KLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDI 352 (811)
Q Consensus 274 ~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~-a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~ 352 (811)
|+.. ++. -.+..|.| +.+.+ |+.+...-..+-.. . -.++++.||++||.|.+-+-+
T Consensus 109 PvL~----KDF-iiD~yQI~--------~Ar~~GADavLLI~~~L~~~---~----l~el~~~A~~LGm~~LVEVh~--- 165 (254)
T COG0134 109 PVLR----KDF-IIDPYQIY--------EARAAGADAVLLIVAALDDE---Q----LEELVDRAHELGMEVLVEVHN--- 165 (254)
T ss_pred Ceee----ccC-CCCHHHHH--------HHHHcCcccHHHHHHhcCHH---H----HHHHHHHHHHcCCeeEEEECC---
Confidence 4432 221 11111211 11111 44443322111110 0 157999999999999997633
Q ss_pred CcccCCCCChHHHHHHHHHcCCCccCeEecc
Q 003550 353 PISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (811)
Q Consensus 353 ~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD 383 (811)
.+|+.+.++.| .+-|=-|
T Consensus 166 ----------~eEl~rAl~~g---a~iIGIN 183 (254)
T COG0134 166 ----------EEELERALKLG---AKIIGIN 183 (254)
T ss_pred ----------HHHHHHHHhCC---CCEEEEe
Confidence 38999999988 6666434
No 245
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.53 E-value=4.7e+02 Score=28.10 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHhcCCCceE-EEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChHHHHHHHhc-cC
Q 003550 523 KFMKLSDFLEMAKNANSLSGV-LISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS 600 (811)
Q Consensus 523 ~ipTL~E~L~~~k~~~~~~gi-~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~~L~~lk~~-p~ 600 (811)
.-|++++.++.++...+ -|+ .|||-.|--..--.|.-+.++-.++|++ |+.-. + -.+.++++|+. ++
T Consensus 21 G~P~~~~~~~~~~~l~~-~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~-G~~~~---~------~~~~~~~~r~~~~~ 89 (258)
T PRK13111 21 GDPDLETSLEIIKALVE-AGADIIELGIPFSDPVADGPVIQAASLRALAA-GVTLA---D------VFELVREIREKDPT 89 (258)
T ss_pred CCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-CCCHH---H------HHHHHHHHHhcCCC
Confidence 35788888776664311 143 7788754321111344455555556653 43310 0 12456666744 78
Q ss_pred ceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCccccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCC
Q 003550 601 YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSD 680 (811)
Q Consensus 601 ~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D 680 (811)
.|++++...+ .+-.-+++...+.|...+++ ..++|.-. +....++++.+++.|+........+-
T Consensus 90 ~p~vlm~Y~N--~i~~~G~e~f~~~~~~aGvd-GviipDLp--~ee~~~~~~~~~~~gl~~I~lvap~t----------- 153 (258)
T PRK13111 90 IPIVLMTYYN--PIFQYGVERFAADAAEAGVD-GLIIPDLP--PEEAEELRAAAKKHGLDLIFLVAPTT----------- 153 (258)
T ss_pred CCEEEEeccc--HHhhcCHHHHHHHHHHcCCc-EEEECCCC--HHHHHHHHHHHHHcCCcEEEEeCCCC-----------
Confidence 8877665432 11112334333334444443 33444211 11234688899999998876443322
Q ss_pred hHHHHHHHH----------HhcCCCEEEeCChHHHHHHHH
Q 003550 681 PTVEINTYY----------EGAGIDGVITEFPMTAARYRR 710 (811)
Q Consensus 681 ~~~e~~~~l----------~~~GVDGIiTD~P~~~~~~~~ 710 (811)
+.+++.... ...|+.|.-|+.|....++++
T Consensus 154 ~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~ 193 (258)
T PRK13111 154 TDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVA 193 (258)
T ss_pred CHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHH
Confidence 112233322 124677877777776665543
No 246
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=24.49 E-value=1.6e+02 Score=30.55 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=60.2
Q ss_pred cEEEEEe--------CChHHHHHHHhccCceEEEEEccccchh--chHh----HHHHHHh----hhhhccccceeecCCc
Q 003550 580 LKVMIQS--------TDSSVLMKLREKTSYELVYKVKENIRDA--LNQT----IEDIKKF----ADSVVLSKESVYPLNS 641 (811)
Q Consensus 580 ~~ViiqS--------fd~~~L~~lk~~p~~~~~~l~~~~~~d~--~~~~----l~~i~~~----a~~v~~~~~~i~p~~~ 641 (811)
+||-+.| .+...++.+++..++|+..++...-+|. ++.. .++|+.+ ++++.+ ..+-+...
T Consensus 22 dRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf--G~L~~dg~ 99 (201)
T PF03932_consen 22 DRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVF--GALTEDGE 99 (201)
T ss_dssp SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE----BETTSS
T ss_pred CEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEE--EeECCCCC
Confidence 3777764 5567777777777888888876644432 1111 2333332 232222 11112111
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe--------CChHHHHHHHH
Q 003550 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT--------EFPMTAARYRR 710 (811)
Q Consensus 642 ~~l~~~~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT--------D~P~~~~~~~~ 710 (811)
-.......+++.++ |++ ||+.. +||...|+...+..++ ++|++.|.| |-.+.++++.+
T Consensus 100 iD~~~~~~Li~~a~--~~~---~tFHR-----AfD~~~d~~~al~~L~-~lG~~rVLTSGg~~~a~~g~~~L~~lv~ 165 (201)
T PF03932_consen 100 IDEEALEELIEAAG--GMP---VTFHR-----AFDEVPDPEEALEQLI-ELGFDRVLTSGGAPTALEGIENLKELVE 165 (201)
T ss_dssp B-HHHHHHHHHHHT--TSE---EEE-G-----GGGGSSTHHHHHHHHH-HHT-SEEEESTTSSSTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC--CCe---EEEeC-----cHHHhCCHHHHHHHHH-hcCCCEEECCCCCCCHHHHHHHHHHHHH
Confidence 00011123444443 444 56653 4799999998888887 899999999 44556655543
No 247
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.36 E-value=2.1e+02 Score=31.19 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=53.9
Q ss_pred hHHHHHHHHcCCeEEE---EecCCCCCcccCCCCCh---HHHHHHHHHcCCCccCeEe-cc-----CCCCcchhhhhhhc
Q 003550 330 TTIVLDAHKERLEVFA---SNFANDIPISFNYSYDP---LTEYLSFIDNGDFSVDGVL-SD-----FPLTPSAAVDCFAH 397 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~---Wtv~n~~~~~~~~~~D~---~~e~~~~i~~G~~~VDgIi-TD-----~P~~a~~~~~~~~~ 397 (811)
.+.|+.|++.|++|.+ .+|..+ +....|+ .+-.+.+.+.| +|.|. .| .|....+.++....
T Consensus 123 ~~~v~~ak~~g~~v~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~G---~d~i~l~DT~G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 123 EPVAEAAKQAGVRVRGYVSCVLGCP----YEGEVPPEAVADVAERLFALG---CYEISLGDTIGVGTPGQVRAVLEAVLA 195 (287)
T ss_pred HHHHHHHHHcCCEEEEEEEEEecCC----CCCCCCHHHHHHHHHHHHHcC---CcEEEeccccCccCHHHHHHHHHHHHH
Confidence 4589999999999852 223222 1112233 44556678888 88763 34 24444444333222
Q ss_pred cCCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccc
Q 003550 398 LGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPV 443 (811)
Q Consensus 398 ~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DV 443 (811)
. .+ ..+.-+-.|. -.|.+..|+++| ++.|+++|++-|
T Consensus 196 ~---~~-~~~i~~H~Hn-~~Gla~AN~laA----~~aG~~~id~s~ 232 (287)
T PRK05692 196 E---FP-AERLAGHFHD-TYGQALANIYAS----LEEGITVFDASV 232 (287)
T ss_pred h---CC-CCeEEEEecC-CCCcHHHHHHHH----HHhCCCEEEEEc
Confidence 1 11 1123355554 346677777765 567999887643
No 248
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.24 E-value=71 Score=40.60 Aligned_cols=21 Identities=38% Similarity=0.887 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 003550 742 PPAEAPNPILTEAAVTEPPLPPV 764 (811)
Q Consensus 742 ~p~~~p~~~~~~~~~~~~p~~~~ 764 (811)
||++||.|.+.+.. +||+||.
T Consensus 9 ppppppppg~epps--~pppPpp 29 (2365)
T COG5178 9 PPPPPPPPGFEPPS--QPPPPPP 29 (2365)
T ss_pred CcccccCCCCCCCC--CCCCccC
Confidence 77777888877655 5666654
No 249
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=23.10 E-value=2.9e+02 Score=29.43 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD 700 (811)
..+++++|+.|+.|..+.= |..+...+..+.|+|.|--.
T Consensus 114 ~~~i~~L~~~gIrvSLFiD--------------P~~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLFID--------------PDPEQIEAAKELGADRVELH 152 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE---------------S-HHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHhCCCEEEEEeC--------------CCHHHHHHHHHcCCCEEEEe
Confidence 4689999999999988752 33344455568999999754
No 250
>PRK10060 RNase II stability modulator; Provisional
Probab=22.91 E-value=7.7e+02 Score=30.08 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~ 701 (811)
..++..+|+.|++|.+-+|.++. ...+++++|||.+.--+
T Consensus 601 ~~ii~~a~~lg~~viAeGVEt~~--------------q~~~l~~~G~d~~QGy~ 640 (663)
T PRK10060 601 RAIVAVAQALNLQVIAEGVETAK--------------EDAFLTKNGVNERQGFL 640 (663)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH--------------HHHHHHHcCCCEEecCc
Confidence 46788999999999999998884 55666799999887654
No 251
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=22.91 E-value=1.1e+02 Score=28.84 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEeCChHHHHHHHHhcccCCCCC-CCCCCCC
Q 003550 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRRNRCLKRGDK-TPPYMNP 726 (811)
Q Consensus 648 ~~~V~~~~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiTD~P~~~~~~~~~~~~~~~~~-~~~~~~p 726 (811)
.+....+.++|+-+-+.|+.+.. +.|+=-.+.|.|+.+.+.+..++.....+ .-.---+
T Consensus 18 ~~~~~~L~eagINiRA~tiAdt~--------------------dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEme 77 (142)
T COG4747 18 ASVANKLKEAGINIRAFTIADTG--------------------DFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEME 77 (142)
T ss_pred HHHHHHHHHcCCceEEEEecccc--------------------CcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEec
Confidence 46788999999999999987662 67888888999999999999887764322 1222346
Q ss_pred CCCCcccccc
Q 003550 727 VQPGGLLPLI 736 (811)
Q Consensus 727 ~~~g~l~~~~ 736 (811)
-.||+|-..+
T Consensus 78 D~PG~l~~I~ 87 (142)
T COG4747 78 DVPGGLSRIA 87 (142)
T ss_pred CCCCcHHHHH
Confidence 6788876554
No 252
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=1.3e+02 Score=33.84 Aligned_cols=108 Identities=16% Similarity=0.050 Sum_probs=64.1
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCCh-HHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccC--C----Cc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDP-LTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLG--K----NA 402 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~-~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~--~----~~ 402 (811)
.+.|+.||++|.++++ ++|-- ..+-..+. ...+.++.+.| ||+||-..|..+.-+....-.+. - |.
T Consensus 52 ~e~i~~ah~~gkk~~V-~~N~~---~~~~~~~~~~~~l~~l~e~G---vDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v 124 (347)
T COG0826 52 AEAVELAHSAGKKVYV-AVNTL---LHNDELETLERYLDRLVELG---VDAVIVADPGLIMLARERGPDLPIHVSTQANV 124 (347)
T ss_pred HHHHHHHHHcCCeEEE-Eeccc---cccchhhHHHHHHHHHHHcC---CCEEEEcCHHHHHHHHHhCCCCcEEEeeeEec
Confidence 5689999999999988 44421 11111111 35667788888 99999999987655554441111 0 11
Q ss_pred cccccceeecCCCCC--CCCCCchHHHHHHHHHCCCCeeeccccc
Q 003550 403 SKSANLLVISKNGAS--GDYPSCTNLAYQKAISDGVDFIDCPVQM 445 (811)
Q Consensus 403 ~~~~~plIIAHRGas--g~~PENTl~Af~~Ai~~Gad~IE~DVql 445 (811)
.+........-+|+. =...|+|+.-..+..+.=.| +|+-|..
T Consensus 125 ~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~-veiEvfV 168 (347)
T COG0826 125 TNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPD-VEIEVFV 168 (347)
T ss_pred CCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCC-ceEEEEE
Confidence 112222233334643 24689999999998875333 4544443
No 253
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.61 E-value=83 Score=33.90 Aligned_cols=82 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhh---------hhhhccCC-
Q 003550 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV---------DCFAHLGK- 400 (811)
Q Consensus 331 ~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~---------~~~~~~~~- 400 (811)
++++.||+.|+--.++.|+. ++.+++.+.| +|.|+....-|..-.+ +|-.....
T Consensus 141 emi~~A~~~gl~T~~yvf~~-------------e~A~~M~~AG---aDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i 204 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAYVFNE-------------EQARAMAEAG---ADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEI 204 (268)
T ss_dssp HHHHHHHHTT-EE--EE-SH-------------HHHHHHHHHT----SEEEEE-SS----------S--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeeeeecCH-------------HHHHHHHHcC---CCEEEecCCccCCCCcCccccCCHHHHHHHHHHH
Confidence 68999999999999998863 7889999999 9999988755543222 11111100
Q ss_pred ---CccccccceeecCCCCCCCCCCchHHHHH
Q 003550 401 ---NASKSANLLVISKNGASGDYPSCTNLAYQ 429 (811)
Q Consensus 401 ---~~~~~~~plIIAHRGasg~~PENTl~Af~ 429 (811)
-...++.+++..|.| .=.-||-...-++
T Consensus 205 ~~aa~~v~~dii~l~hGG-PI~~p~D~~~~l~ 235 (268)
T PF09370_consen 205 FDAARAVNPDIIVLCHGG-PIATPEDAQYVLR 235 (268)
T ss_dssp HHHHHCC-TT-EEEEECT-TB-SHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeCC-CCCCHHHHHHHHh
Confidence 013456788999955 3334544433333
No 254
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=22.42 E-value=3.3e+02 Score=30.26 Aligned_cols=86 Identities=26% Similarity=0.298 Sum_probs=51.8
Q ss_pred hHHHHHHHHcC--CeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEecc-CCCC--------------cchhh
Q 003550 330 TTIVLDAHKER--LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD-FPLT--------------PSAAV 392 (811)
Q Consensus 330 ~~~V~~ah~~G--l~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD-~P~~--------------a~~~~ 392 (811)
.++++.+|+.+ +.|.+.++.+ .++.+++++.| +|+|..- -|.. +....
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t------------~~~A~~l~~aG---aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~ 187 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVT------------AEAARDLIDAG---ADGVKVGIGPGSICTTRIVTGVGVPQATAVA 187 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCC------------HHHHHHHHhcC---CCEEEECCCCCcCcccceeCCCCCCHHHHHH
Confidence 45788888887 7888777654 37889999999 9999742 1111 11111
Q ss_pred hhhhccCCCccccccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeec
Q 003550 393 DCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDC 441 (811)
Q Consensus 393 ~~~~~~~~~~~~~~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~ 441 (811)
.+.... ...+.-||+-.|.. |-.-..+|++.|||.+=+
T Consensus 188 ~v~~~~-----~~~~vpVIA~GGI~------~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 188 DVAAAA-----RDYGVPVIADGGIR------TSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHH-----hhcCCcEEecCCCC------CHHHHHHHHHcCCCEEEe
Confidence 111111 01123366665543 235677888899999866
No 255
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=22.27 E-value=4.2e+02 Score=27.40 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred CeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccceeecCCCCCCCC
Q 003550 341 LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420 (811)
Q Consensus 341 l~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~plIIAHRGasg~~ 420 (811)
+.|.+=||-+. ++.+..++.| .|+|+| |..-....+..... +.+.+.|
T Consensus 63 ~~iGaGTV~~~------------~~~~~a~~aG---A~fivs--p~~~~~v~~~~~~~-------~~~~~~G-------- 110 (206)
T PRK09140 63 ALIGAGTVLSP------------EQVDRLADAG---GRLIVT--PNTDPEVIRRAVAL-------GMVVMPG-------- 110 (206)
T ss_pred cEEeEEecCCH------------HHHHHHHHcC---CCEEEC--CCCCHHHHHHHHHC-------CCcEEcc--------
Confidence 78899998764 7889999999 999999 44433343322211 2333433
Q ss_pred CCchHHHHHHHHHCCCCeee
Q 003550 421 PSCTNLAYQKAISDGVDFID 440 (811)
Q Consensus 421 PENTl~Af~~Ai~~Gad~IE 440 (811)
-+|..-...|.+.|+|+|-
T Consensus 111 -~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 111 -VATPTEAFAALRAGAQALK 129 (206)
T ss_pred -cCCHHHHHHHHHcCCCEEE
Confidence 4455667888999999986
No 256
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=22.24 E-value=1.2e+02 Score=33.72 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=31.6
Q ss_pred CChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 328 ~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
|+..+++.+|+.|+.|++ ++.+ .++.+++.+.| +|+|+.--+
T Consensus 124 p~~~~i~~l~~~gi~v~~-~v~s------------~~~A~~a~~~G---~D~iv~qG~ 165 (330)
T PF03060_consen 124 PPPEVIERLHAAGIKVIP-QVTS------------VREARKAAKAG---ADAIVAQGP 165 (330)
T ss_dssp C-HHHHHHHHHTT-EEEE-EESS------------HHHHHHHHHTT----SEEEEE-T
T ss_pred chHHHHHHHHHcCCcccc-ccCC------------HHHHHHhhhcC---CCEEEEecc
Confidence 337899999999999887 5554 48889999999 999996644
No 257
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.95 E-value=1.1e+03 Score=25.94 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=86.4
Q ss_pred EEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCC-hHHHHHHHhc---cCceEEEEEccccchhchHh
Q 003550 543 VLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD-SSVLMKLREK---TSYELVYKVKENIRDALNQT 618 (811)
Q Consensus 543 i~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd-~~~L~~lk~~---p~~~~~~l~~~~~~d~~~~~ 618 (811)
-..||..|...+- =.+.|.+.+.......+.+-.+|. .+-...+... ++.|+.++.+.-...++++.
T Consensus 117 ~vfEvD~Pevi~~---------K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~ 187 (297)
T COG3315 117 RVFEVDLPEVIEF---------KKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEA 187 (297)
T ss_pred eEEECCCcHHHHH---------HHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHH
Confidence 4778888765431 134566666443322466777776 8888888864 78899999888766667766
Q ss_pred HHHHHHhhhhhccccceeecCCccccCCCHHHHHHH--HHcCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCE
Q 003550 619 IEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRL--QSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDG 696 (811)
Q Consensus 619 l~~i~~~a~~v~~~~~~i~p~~~~~l~~~~~~V~~~--~~~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDG 696 (811)
.+.+..+......+.+.++-... .....+... +..+....-|..+-.. +-++.+...|+..|+.+.|...
T Consensus 188 v~~ll~~I~~~~~~gS~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~e~~~~l~~~g~~~ 259 (297)
T COG3315 188 VDRLLSRIAALSAPGSRVAFDYS----LPGSLRDRLRRPAARKTMRGEDLDRGE----LVYFGDDPAEIETWLAERGWRS 259 (297)
T ss_pred HHHHHHHHHHhCCCCceEEEecc----ccHHHHhcccchhhhhhcccccccccc----ceeccCCHHHHHHHHHhcCEEE
Confidence 66665554444443333332110 123343333 3344444333332121 2233343457999998999988
Q ss_pred EEe-CChHHHHHHH
Q 003550 697 VIT-EFPMTAARYR 709 (811)
Q Consensus 697 IiT-D~P~~~~~~~ 709 (811)
... ..++...++.
T Consensus 260 ~~~~~~~~~~~~~~ 273 (297)
T COG3315 260 TLNRTTEDLAARYG 273 (297)
T ss_pred EecCCcHHHHHHhC
Confidence 888 4555555554
No 258
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.91 E-value=1.1e+03 Score=25.90 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCC--------hHHHH-H
Q 003550 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--------SSVLM-K 594 (811)
Q Consensus 524 ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd--------~~~L~-~ 594 (811)
+.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-.. ...+. .
T Consensus 3 lv~~k~lL~~A~~~~yAV~-AfN~~n---------~e~~~avi~AAee~~------sPvIl~~~~~~~~~~~~~~~~~~~ 66 (286)
T PRK08610 3 LVSMKEMLIDAKENGYAVG-QYNLNN---------LEFTQAILEASQEEN------APVILGVSEGAARYMSGFYTVVKM 66 (286)
T ss_pred CCcHHHHHHHHHHCCceEE-EEEECC---------HHHHHHHHHHHHHHC------CCEEEEcCccHHhhcCcHHHHHHH
Confidence 5678999999988732222 333322 224556777666543 367777532 12111 2
Q ss_pred HHh---cc--CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcEEEE
Q 003550 595 LRE---KT--SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPVYVE 664 (811)
Q Consensus 595 lk~---~p--~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V~vw 664 (811)
++. .- .+|+++-++... +++.+++- +..-+++++-..+ ..+..+.++|+.+|..|+.|=..
T Consensus 67 ~~~~A~~~~~~vPV~lHLDHg~------~~e~i~~a---i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE 137 (286)
T PRK08610 67 VEGLMHDLNITIPVAIHLDHGS------SFEKCKEA---IDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAE 137 (286)
T ss_pred HHHHHHHcCCCCCEEEECCCCC------CHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222 22 378998888742 24444332 2222344432211 12334678999999999988333
Q ss_pred e--c-CCccc-ccccccCCChHHHHHHHHHhcCCCE
Q 003550 665 T--F-SNEFV-SQAWDFFSDPTVEINTYYEGAGIDG 696 (811)
Q Consensus 665 t--v-nne~~-~~~~d~~~D~~~e~~~~l~~~GVDG 696 (811)
. + ..+.- ...-..+-||. |..+|+.+-|||.
T Consensus 138 lG~vgg~ed~~~~~~~~yT~pe-ea~~Fv~~TgvD~ 172 (286)
T PRK08610 138 LGTVGGQEDDVVADGIIYADPK-ECQELVEKTGIDA 172 (286)
T ss_pred EeccCCccCCCCCcccccCCHH-HHHHHHHHHCCCE
Confidence 1 1 12110 00012234454 4666665566653
No 259
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.89 E-value=7.9e+02 Score=26.49 Aligned_cols=141 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcceeeeecCCCccCCCcccchHHHhhhHHHHHhhcccccCCCcccccCCCcccCCCChHHHHHHH
Q 003550 258 VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAH 337 (811)
Q Consensus 258 ~~~L~~l~~~~~~~~~~lv~~~~~~~~~~~~~~~~y~~l~~~L~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah 337 (811)
.+.++++++.. ++|+++ +...+++ ..||--.-.-+....-++|+.+|.--+-.. .++.+.++
T Consensus 80 ~~~~~~~r~~~---~~p~vl-m~Y~N~i-----~~~G~e~F~~~~~~aGvdgviipDLP~ee~---------~~~~~~~~ 141 (263)
T CHL00200 80 LSILSEVNGEI---KAPIVI-FTYYNPV-----LHYGINKFIKKISQAGVKGLIIPDLPYEES---------DYLISVCN 141 (263)
T ss_pred HHHHHHHhcCC---CCCEEE-EecccHH-----HHhCHHHHHHHHHHcCCeEEEecCCCHHHH---------HHHHHHHH
Q ss_pred HcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCC--------CccCeEeccCCCCcchhhhhhhccCCCccccccce
Q 003550 338 KERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGD--------FSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLL 409 (811)
Q Consensus 338 ~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~--------~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~pl 409 (811)
++|+....-.-.+- |.+.++...+..+ -+|.|.-++.+....+.++.-.+. ...|+
T Consensus 142 ~~gi~~I~lv~PtT----------~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~------t~~Pi 205 (263)
T CHL00200 142 LYNIELILLIAPTS----------SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKM------TNKPI 205 (263)
T ss_pred HcCCCEEEEECCCC----------CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHh------cCCCE
Q ss_pred eecCCCCCCCCCCchHHHHHHHHHCCCCee
Q 003550 410 VISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (811)
Q Consensus 410 IIAHRGasg~~PENTl~Af~~Ai~~Gad~I 439 (811)
+++ +-=||..-.+++.+.|||++
T Consensus 206 ~vG-------FGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 206 ILG-------FGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred EEE-------CCcCCHHHHHHHHhcCCCEE
No 260
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.72 E-value=8.7e+02 Score=25.95 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=76.9
Q ss_pred cHHHHHHhhCCCceEEeeccchhhh---hcCchHHHHHHHHhhhcCceEEec--------CCHHHHHHHHHhcCCCCcce
Q 003550 207 TVQDMARQIKPPGLWLNIQHDAFYA---QHNLSMRSFVLSVSRSVVVNYISS--------PEVNFLRSIAARFRPSMTKL 275 (811)
Q Consensus 207 tL~evl~~~~~~~l~leiK~~~~~~---~~~~~~~~~l~~~lk~~~~~~isS--------f~~~~L~~l~~~~~~~~~~l 275 (811)
.+.+.|.. ....+.-|+|..+-.. ....++. .+.+...+.|..-|+- =+.+.++.+++.. +.|+
T Consensus 40 ~~~~~l~~-~~~~vIaeik~~sps~g~i~~~~~~~-~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v---~iPv 114 (260)
T PRK00278 40 DFAAALRA-GKPAVIAEVKKASPSKGVIREDFDPV-EIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV---SLPV 114 (260)
T ss_pred CHHHHHhc-CCCeEEEEeeCCCCCCCccCCCCCHH-HHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc---CCCE
Confidence 35555552 3367888998643221 1123343 3445555566643332 4578899998876 4566
Q ss_pred eeeecCCCccCCCcccchHHHhhhHHHHH-hhcccccCCCcccccCCCcccCCCChHHHHHHHHcCCeEEEEecCCCCCc
Q 003550 276 VFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPI 354 (811)
Q Consensus 276 v~~~~~~~~~~~~~~~~y~~l~~~L~~i~-~~a~gi~~~~~~i~~~~~~~~l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~ 354 (811)
+. .+.+- ..| . +.... .-|+++.+....+-+. .-.++++.+|+.|+++.+=+-+
T Consensus 115 l~----kdfi~----~~~-q----i~~a~~~GAD~VlLi~~~l~~~-------~l~~li~~a~~lGl~~lvevh~----- 169 (260)
T PRK00278 115 LR----KDFII----DPY-Q----IYEARAAGADAILLIVAALDDE-------QLKELLDYAHSLGLDVLVEVHD----- 169 (260)
T ss_pred Ee----eeecC----CHH-H----HHHHHHcCCCEEEEEeccCCHH-------HHHHHHHHHHHcCCeEEEEeCC-----
Confidence 53 22111 122 1 12222 2366666543332110 1157999999999999986533
Q ss_pred ccCCCCChHHHHHHHHHcCCCccCeEecc
Q 003550 355 SFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (811)
Q Consensus 355 ~~~~~~D~~~e~~~~i~~G~~~VDgIiTD 383 (811)
.+|.++..+.| +|.|-.+
T Consensus 170 --------~~E~~~A~~~g---adiIgin 187 (260)
T PRK00278 170 --------EEELERALKLG---APLIGIN 187 (260)
T ss_pred --------HHHHHHHHHcC---CCEEEEC
Confidence 36888889888 9988754
No 261
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=21.61 E-value=4.4e+02 Score=31.01 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=49.7
Q ss_pred cccccCCCcccccCCCccc-CCCChHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHHHHHHHHcCCCccCeEeccCC
Q 003550 307 ASGILVPKDYIWPVDESLY-LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (811)
Q Consensus 307 a~gi~~~~~~i~~~~~~~~-l~~~~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e~~~~i~~G~~~VDgIiTD~P 385 (811)
.+.+.++|+++.....++. -..-+.+++.||.+||++.|=++..+ ++..++...|.=...|=.---|
T Consensus 437 VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEte------------eQ~~~LR~~Gv~~gQGW~fska 504 (524)
T COG4943 437 VDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETE------------EQVDWLRKRGVHYGQGWLFSKA 504 (524)
T ss_pred ccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHH------------HHHHHHHHcCCccccccccCCC
Confidence 4445555655543322211 11235799999999999999998765 7778889988322335555555
Q ss_pred CCcchhhhhhhcc
Q 003550 386 LTPSAAVDCFAHL 398 (811)
Q Consensus 386 ~~a~~~~~~~~~~ 398 (811)
--+.++++.+.+.
T Consensus 505 Lp~q~Fi~~~~q~ 517 (524)
T COG4943 505 LPAQAFLDWAEQQ 517 (524)
T ss_pred CCHHHHHHHHHhC
Confidence 5556666655443
No 262
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=21.46 E-value=65 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.065 Sum_probs=32.2
Q ss_pred CCCCCCCchHHHHH-HHHHHcCCCCcEEEeeeeeecCCcEEEecCCCC
Q 003550 99 GFSGIFPDSSSIAY-SLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (811)
Q Consensus 99 G~~~~~PENTl~A~-~~A~~~g~~~~~vE~DVqlTkDg~~v~~HD~~l 145 (811)
|..|..-=|-++.- +-|...|+- -+|.-|++-||.+.|-.||..+
T Consensus 256 gsdgharfnelatkaqiaqsfgav--nletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 256 GSDGHARFNELATKAQIAQSFGAV--NLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred CCcchhHHHHHHHHHHHHHhcCcc--ceeeeeeccccceeeecccceE
Confidence 33344444544432 445667876 8999999999999999999855
No 263
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.21 E-value=1.2e+03 Score=26.09 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCccHHHHHHHHHHhcCCCCCCCcEEEEEeCChH-------HHHH-
Q 003550 523 KFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS-------VLMK- 594 (811)
Q Consensus 523 ~ipTL~E~L~~~k~~~~~~gi~IEiK~~~~~~~~~g~~~~~~v~~~L~~~g~~~~~~~~ViiqSfd~~-------~L~~- 594 (811)
.+.++.|+|+.+++.+-.++ -+++-+ .+...+++++-++.+ ..|+||-.... .+..
T Consensus 8 ~lv~~k~lL~~A~~~~yAV~-AfN~~n---------~e~~~avi~AAee~~------sPvIlq~s~~~~~~~g~~~~~~~ 71 (321)
T PRK07084 8 GLVNTREMFAKAVKGGYAIP-AYNFNN---------MEQLQAIIQACVETK------SPVILQVSKGARKYANATLLRYM 71 (321)
T ss_pred cccCHHHHHHHHHHCCceEE-EEEeCC---------HHHHHHHHHHHHHhC------CCEEEEechhHHhhCCchHHHHH
Confidence 45789999999988732111 223322 234556666666543 36787764311 1111
Q ss_pred ---HHhc---c--CceEEEEEccccchhchHhHHHHHHhhhhhccccceeecCCc-----cccCCCHHHHHHHHHcCCcE
Q 003550 595 ---LREK---T--SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS-----AFITSATDIVQRLQSFKLPV 661 (811)
Q Consensus 595 ---lk~~---p--~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~i~p~~~-----~~l~~~~~~V~~~~~~Gl~V 661 (811)
++.. - ++|+++..+... .++.+++ ++..-+++++-..+ ..+..+.++|+.+|..|+.|
T Consensus 72 ~~~~~~~a~~a~~~VPV~lHLDHg~------~~e~i~~---ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsV 142 (321)
T PRK07084 72 AQGAVEYAKELGCPIPIVLHLDHGD------SFELCKD---CIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTV 142 (321)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCC------CHHHHHH---HHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1221 1 678888887741 1333322 12222233332111 12334678999999999988
Q ss_pred E
Q 003550 662 Y 662 (811)
Q Consensus 662 ~ 662 (811)
=
T Consensus 143 E 143 (321)
T PRK07084 143 E 143 (321)
T ss_pred E
Confidence 3
No 264
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=60 Score=37.29 Aligned_cols=18 Identities=39% Similarity=0.445 Sum_probs=16.6
Q ss_pred hHHHHHHHHcCCeEEEEe
Q 003550 330 TTIVLDAHKERLEVFASN 347 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wt 347 (811)
...|+.||+.||+|++|-
T Consensus 118 a~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 118 AFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred HHHHHHHHhcCCeeeech
Confidence 579999999999999994
No 265
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.84 E-value=2.7e+02 Score=29.87 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=55.3
Q ss_pred eCChHHHHHHHhccCceEEEEEccccchhc--hHh----HHHHHHhhhhhcccc---ceeecCCccccCCCHHHHHHHHH
Q 003550 586 STDSSVLMKLREKTSYELVYKVKENIRDAL--NQT----IEDIKKFADSVVLSK---ESVYPLNSAFITSATDIVQRLQS 656 (811)
Q Consensus 586 Sfd~~~L~~lk~~p~~~~~~l~~~~~~d~~--~~~----l~~i~~~a~~v~~~~---~~i~p~~~~~l~~~~~~V~~~~~ 656 (811)
+.+...++..++..++|+..++...-+|.. +.. .++|+.+ ...+.+. ..+-+...-.......+++.++
T Consensus 37 TPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~-~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~- 114 (248)
T PRK11572 37 TPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATV-RELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG- 114 (248)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHH-HHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc-
Confidence 356777888877667888777766444421 222 2333322 2223210 1111211100111233444442
Q ss_pred cCCcEEEEecCCcccccccccCCChHHHHHHHHHhcCCCEEEe
Q 003550 657 FKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (811)
Q Consensus 657 ~Gl~V~vwtvnne~~~~~~d~~~D~~~e~~~~l~~~GVDGIiT 699 (811)
|+ .||+... ||...|+...+..++ ++|++.|.|
T Consensus 115 -~~---~vTFHRA-----fD~~~d~~~al~~l~-~lG~~rILT 147 (248)
T PRK11572 115 -PL---AVTFHRA-----FDMCANPLNALKQLA-DLGVARILT 147 (248)
T ss_pred -CC---ceEEech-----hhccCCHHHHHHHHH-HcCCCEEEC
Confidence 43 4677644 688889987777776 999999998
No 266
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=20.77 E-value=34 Score=37.67 Aligned_cols=134 Identities=29% Similarity=0.419 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCC----hHHHHHHHhc----cCc--eEEEEEcc-ccchhchHhHHHHHHhhhhh
Q 003550 561 VTNSVMEALGNAGYNKQTALKVMIQSTD----SSVLMKLREK----TSY--ELVYKVKE-NIRDALNQTIEDIKKFADSV 629 (811)
Q Consensus 561 ~~~~v~~~L~~~g~~~~~~~~ViiqSfd----~~~L~~lk~~----p~~--~~~~l~~~-~~~d~~~~~l~~i~~~a~~v 629 (811)
-+.++.+.|.+.|+. +|-|-|+. +..---||.. |.+ +..|.++. +.+.+-.+...++...|+.+
T Consensus 173 rV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~l 247 (324)
T PF00490_consen 173 RVGAIREALDEAGFS-----DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADIL 247 (324)
T ss_dssp HHHHHHHHHHHTTCT-----TSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHhCCCC-----CccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEE
Confidence 577899999999987 44555543 3333344443 222 12222222 11112223334445555544
Q ss_pred ccccceeecCCccccCCCHHHHHHHHH-cCCcEEEEecCCccccccc---ccCCChH---HHHHHHHHhcCCCEEEeCCh
Q 003550 630 VLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQAW---DFFSDPT---VEINTYYEGAGIDGVITEFP 702 (811)
Q Consensus 630 ~~~~~~i~p~~~~~l~~~~~~V~~~~~-~Gl~V~vwtvnne~~~~~~---d~~~D~~---~e~~~~l~~~GVDGIiTD~P 702 (811)
-+ -|. ..|| ++++++++ .++++.+|-|..|..++-. .=|-|.. -|...-++.+|.|+|||=|-
T Consensus 248 MV-----KPa-l~YL----DIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA 317 (324)
T PF00490_consen 248 MV-----KPA-LPYL----DIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYFA 317 (324)
T ss_dssp EE-----ESS-GGGH----HHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETTH
T ss_pred Ee-----ecc-hhHH----HHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeecH
Confidence 33 232 1233 78888885 6999999999877543321 1123332 33444456899999999998
Q ss_pred HHHHHHH
Q 003550 703 MTAARYR 709 (811)
Q Consensus 703 ~~~~~~~ 709 (811)
..+.+++
T Consensus 318 ~~~a~~L 324 (324)
T PF00490_consen 318 KEAAKWL 324 (324)
T ss_dssp HHHHHHT
T ss_pred HHHHhhC
Confidence 8888764
No 267
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.62 E-value=1.1e+02 Score=32.34 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=26.2
Q ss_pred ccceeecCCCCCCCCCCchHHHHHHHHHCCCCeeeccccc
Q 003550 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQM 445 (811)
Q Consensus 406 ~~plIIAHRGasg~~PENTl~Af~~Ai~~Gad~IE~DVql 445 (811)
+.|+|+.-||. .....++.|++.++|+|++++..
T Consensus 76 ~~p~I~T~R~~------~~~~~l~~a~~~~~d~vDIEl~~ 109 (229)
T PRK01261 76 DIDYIFTYRGV------DARKYYETAIDKMPPAVDLDINL 109 (229)
T ss_pred CCCEEEEEcCC------CHHHHHHHHHhhCCCEEEEEccc
Confidence 46888888975 12577889999889999888754
No 268
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.57 E-value=4.8e+02 Score=27.73 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=52.0
Q ss_pred hHHHHHHHHcCCeEEEEecCCCCCcccCCCCChHHH-HHHHHHcCCCccCeEeccCCCCcchhhhhhhccCCCccccccc
Q 003550 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE-YLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408 (811)
Q Consensus 330 ~~~V~~ah~~Gl~V~~Wtv~n~~~~~~~~~~D~~~e-~~~~i~~G~~~VDgIiTD~P~~a~~~~~~~~~~~~~~~~~~~p 408 (811)
..+.+.+|+.|+.+.++....-.-..+ ...+...+ .+...+.| +|.|-|.++.. .+.++..... -+-|
T Consensus 126 ~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~~~~~~~~~~a~~~G---ADyikt~~~~~-~~~l~~~~~~------~~iP 194 (258)
T TIGR01949 126 GMIAEICDDWGVPLLAMMYPRGPHIDD-RDPELVAHAARLGAELG---ADIVKTPYTGD-IDSFRDVVKG------CPAP 194 (258)
T ss_pred HHHHHHHHHcCCCEEEEEeccCccccc-ccHHHHHHHHHHHHHHC---CCEEeccCCCC-HHHHHHHHHh------CCCc
Confidence 456777899999888865521111111 11112233 35566788 99999998732 1222222211 1234
Q ss_pred eeecCCCCCC-CCCCchHHHHHHHHHCCCCeee
Q 003550 409 LVISKNGASG-DYPSCTNLAYQKAISDGVDFID 440 (811)
Q Consensus 409 lIIAHRGasg-~~PENTl~Af~~Ai~~Gad~IE 440 (811)
++++ |+-. .-.|-.+.-...+++.||+++=
T Consensus 195 Vva~--GGi~~~~~~~~~~~i~~~~~aGa~Gia 225 (258)
T TIGR01949 195 VVVA--GGPKTNSDREFLQMIKDAMEAGAAGVA 225 (258)
T ss_pred EEEe--cCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 5443 4332 1234445556677789998653
Done!