BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003551
         (811 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
          Length = 1052

 Score = 29.3 bits (64), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/71 (22%), Positives = 39/71 (54%)

Query: 643 LAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVG 702
           L  AI  VF+V  +   +F ++ I  + + ++++   GV+A     +N +++  +V+A+G
Sbjct: 344 LGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIG 403

Query: 703 IAVEFCVHITH 713
           + V+  + +  
Sbjct: 404 LLVDDAIVVVE 414


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,650,573
Number of Sequences: 62578
Number of extensions: 695346
Number of successful extensions: 1667
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 12
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)