BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003551
(811 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/821 (39%), Positives = 501/821 (61%), Gaps = 60/821 (7%)
Query: 2 ISLTDICMKPL---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYT 49
++L DIC+ PL ++C SVL YF+ +D + DDF H YC +
Sbjct: 462 VTLQDICVAPLSPYNKNCTIMSVLNYFQNSHAVLDSQVGDDFYIYADYHTHFLYCVRAPA 521
Query: 50 STES-------CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 102
S C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + ++A
Sbjct: 522 SLNDTSLLHGPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTERLQRA 580
Query: 103 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 162
AWEK F+ K+ ++ NLT++F++E SIE+EL RES +D T++ISY+VMF YI
Sbjct: 581 WAWEKEFISFVKN-----YKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVVMFLYI 635
Query: 163 SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 222
SL LG S + SK+ LG++G+++V+ SV S+G FS +G+ TLI++EVIPFLVL
Sbjct: 636 SLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVL 695
Query: 223 AVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280
AVGVDN+ ILV +R + E L+ ++ L EV P++ L+S SE AF G+ MP
Sbjct: 696 AVGVDNIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMP 755
Query: 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 340
A FS+FA +AVL+DFLLQIT FV+L+ D R E +D + C++ +D G G
Sbjct: 756 AVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVR------GADDGQG 809
Query: 341 QR-KPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRD 399
L R+ K A +L ++ V+++FV S+A+ +++ GL+Q + +P D
Sbjct: 810 SHASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPND 869
Query: 400 SYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASL 458
SY+ YF +++++L GPP+YFV++ YNYSS Q N +C CD++SL+ +I A+
Sbjct: 870 SYVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSRKGQ-NMVCGGMGCDNDSLVQQIFNAAE 928
Query: 459 IPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 518
+ + + +SW+DD+ W+SP++ CCR + C ++ +
Sbjct: 929 LDTYTRVGFAPSSWIDDYFDWVSPQS-SCCRLYN---------------VTHQFCNASVM 972
Query: 519 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGI 578
C C + K RP +F + LP FL+ P+ C KGGH AY ++V++ G ++
Sbjct: 973 DPTCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTY 1031
Query: 579 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ-----MEIFPYSVFYMYFEQYL 633
+ A+ F TYHT L DY ++M+ AR +S ++++++ +FPYSVFY+++EQYL
Sbjct: 1032 IGATYFMTYHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYL 1091
Query: 634 DIWRTALINLAIAIGAVFVVCLIT-TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAV 692
I + NL++++G++F+V L+ C WS+ I+ + + MI+V++ GVM + I LNAV
Sbjct: 1092 TIIDDTIFNLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAV 1151
Query: 693 SVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIV 751
S+VNLVM+ GI+VEFC HIT AF++S+ G + R +EAL MG+SVFSGITLTK G++V
Sbjct: 1152 SLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVV 1211
Query: 752 LCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
L F+++++F ++YF+MYLA+VLLG HGL+FLPV+LS GP
Sbjct: 1212 LAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1252
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 331/821 (40%), Positives = 499/821 (60%), Gaps = 60/821 (7%)
Query: 2 ISLTDICMKPL---GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYT 49
++L DIC+ PL ++C SVL YF+ D DF V H YC +
Sbjct: 462 VTLQDICLAPLSPYNKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPA 521
Query: 50 S-------TESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 102
S + C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A
Sbjct: 522 SLNDASLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRA 580
Query: 103 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 162
AWE F+ K+ ++ NLT++F +E SIE+EL RES +D TI+ISY +MF YI
Sbjct: 581 QAWESEFINFVKN-----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYI 635
Query: 163 SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 222
S+ LG S + SK+ LG++G+++V+ SV S+G FS IGV TLI++EVIPFLVL
Sbjct: 636 SIALGHIKSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVL 695
Query: 223 AVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280
AVGVDN+ ILV +R + L+ ++ L EV PS+ L+S SE +AF +G +P
Sbjct: 696 AVGVDNIFILVQTYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVP 755
Query: 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 340
A FS+FA +AVL+DFLLQIT FV+L+ D R E R+D + C++ ++ G G
Sbjct: 756 AVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQ------GAEDGAG 809
Query: 341 -QRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRD 399
Q L R+ K +A +L ++ VI++FV SIA+ ++E GL+Q + +P D
Sbjct: 810 VQASESCLFRFFKNSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDD 869
Query: 400 SYLQGYFNNISEHLRIGPPLYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASL 458
SY+ YF ++S +L GPP+YFVV + +NY+S Q N +C C+++SL+ +I A+
Sbjct: 870 SYVMDYFQSLSRYLHAGPPVYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQ 928
Query: 459 IPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 518
+ + I +SW+DD+ WI P++ CCR + S C ++ V
Sbjct: 929 LDNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVYN---------------STDQFCNASVV 972
Query: 519 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGI 578
C C + K RP F LP FL+ P+ C KGGH AY+++V++ G +G
Sbjct: 973 DPTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG- 1031
Query: 579 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYL 633
V A+ F TYHT L D++++M+ AR +S ++ ++ +E +FPYSVFY+++EQYL
Sbjct: 1032 VGATYFMTYHTVLQASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYL 1091
Query: 634 DIWRTALINLAIAIGAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAV 692
+ + NL +++GA+F+V ++ C W++ I+ + + MI+V++ GVM + I LNAV
Sbjct: 1092 TVIDDTIFNLGVSLGAIFLVTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAV 1151
Query: 693 SVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIV 751
S+VNLVM+ GI+VEFC HIT AF++S+ G + R +EAL MG+SVFSGITLTK G++V
Sbjct: 1152 SLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVV 1211
Query: 752 LCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
L F+++++F ++YF+MYLA+VLLG HGL+FLPV+LS GP
Sbjct: 1212 LAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 331/838 (39%), Positives = 495/838 (59%), Gaps = 67/838 (7%)
Query: 2 ISLTDICMKPL---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYT 49
++L DIC+ PL +C SVL YF+ +D K DDF H YC +
Sbjct: 462 VTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPA 521
Query: 50 S-------TESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 102
S + C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A
Sbjct: 522 SLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRA 580
Query: 103 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 162
AWEK F+ K+ ++ NLT++F++E SIE+EL RES +D T+VISY +MF YI
Sbjct: 581 QAWEKEFINFVKN-----YKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYI 635
Query: 163 SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 222
SL LG + SKV LG++G+++V+ SV S+G FS IG+ TLI++EVIPFLVL
Sbjct: 636 SLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVL 695
Query: 223 AVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280
AVGVDN+ ILV A +R + L+ ++ L EV PS+ L+S SE +AF +G+ MP
Sbjct: 696 AVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMP 755
Query: 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 340
A FS+FA LAV +DFLLQIT FV+L+ D R E R+D C++ D
Sbjct: 756 AVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVR-----GAEDGTSV 810
Query: 341 QRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDS 400
Q L R+ K ++ +L ++ VI++FV SIA+ +++ GL+Q + +P DS
Sbjct: 811 QASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDS 870
Query: 401 YLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 460
Y+ YF +IS++L GPP+YFV++ + + S+ N +C C+++SL+ +I A+ +
Sbjct: 871 YMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLD 930
Query: 461 QSSYIAKPAASWLDDFLVWISPEAFGCCR------KFTNGSYCPPDDQPPCCPSGQSSCG 514
+ I +SW+DD+ W+ P++ CCR +F N S P
Sbjct: 931 NYTRIGFAPSSWIDDYFDWVKPQS-SCCRVDNITDQFCNASVVDP--------------- 974
Query: 515 SAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGY 574
C C + K RP F LP FL+ P+ C KGGH AY+++V++
Sbjct: 975 ------ACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLG 1028
Query: 575 ENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-----EIFPYSVFYMYF 629
V A+ F TYHT L D++++++ AR +S V++++ + +FPYSVFY+++
Sbjct: 1029 HGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFY 1088
Query: 630 EQYLDIWRTALINLAIAIGAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQ 688
EQYL I + NL +++GA+F+V ++ C WS+ I+ + M++V++ GVM + I
Sbjct: 1089 EQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGIS 1148
Query: 689 LNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLV 747
LNAVS+VNLVM+ GI+VEFC HIT AF+VS G + +R +EAL MG+SVFSGITLTK
Sbjct: 1149 LNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFG 1208
Query: 748 GVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEER 805
G++VL F+++++F ++YF+MYLA+VLLG HGL+FLPV+LS GP EER
Sbjct: 1209 GIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEER 1266
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 325/843 (38%), Positives = 481/843 (57%), Gaps = 67/843 (7%)
Query: 2 ISLTDICMKPLG------QDCATQSVLQYFK------MDPKNFDDFGGV------EHVKY 43
ISL DIC PL DC S+LQYF+ M N G +H Y
Sbjct: 465 ISLQDICYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFLY 524
Query: 44 C------FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 96
C F+ TS SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN +
Sbjct: 525 CANAPLTFKDGTSLALSCMADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNN-YPADD 583
Query: 97 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 156
+A WE+AF L + E S +AFS+E S+E+E+ R + D +SY+
Sbjct: 584 PRMAQAKLWEEAF--LKEMESFQRNTSDKFQVAFSAERSLEDEINRTTIQDLPVFAVSYI 641
Query: 157 VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEV 216
++F YISL LG S + SK LGL GV++V+ +VL ++GF+S +GV S+L+I++V
Sbjct: 642 IVFLYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQV 701
Query: 217 IPFLVLAVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLSEVLAFAV 273
+PFLVLAVG DN+ I V +R +P E R I L V PS+ L SLSE + F +
Sbjct: 702 VPFLVLAVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFL 760
Query: 274 GSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYA 333
G+ PMPA R F++ + LA++LDFLLQ+TAFVAL+ D R E R D + C ++
Sbjct: 761 GALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCC------FS 814
Query: 334 DSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 393
+ K GLL R+ ++++A L ++ V+ LF+ A++ L I GL+Q+
Sbjct: 815 TRKLPPPKEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQE 874
Query: 394 IVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNE 452
+ LP+DSYL YF ++ +L +GPP+YFV + +N+SSE+ N CS + C S SL +
Sbjct: 875 LALPKDSYLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEA-GMNATCSSAGCKSFSLTQK 933
Query: 453 ISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSS 512
I AS P SY+A A+SW+DDF+ W++P + CCR + G P D+ CPS +S
Sbjct: 934 IQYASEFPDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRG---PHKDE--FCPSTDTS 987
Query: 513 CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK 572
C + T L RP+ QF + LPWFLN P+ C KGG AY SV+L
Sbjct: 988 FNCLKNCMNRT-------LGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS 1040
Query: 573 GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------MEIFPYSV 624
+G V AS F YH PL D+ ++RA+R ++ ++ L+ E+FPY++
Sbjct: 1041 --SDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTI 1098
Query: 625 FYMYFEQYLDIWRTALINLAIAIGAVFVVC-LITTCSFWSSAIILLVLTMIVVDLMGVMA 683
++++QYL + + LA+ FVVC L+ S + LL + MI+VD +G+MA
Sbjct: 1099 SNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDMCSGILNLLSIIMILVDTIGLMA 1158
Query: 684 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKN-QRMKEALGTMGASVFSGIT 742
+ I NAVS++NLV AVG++VEF HIT +F+VS+ +R K+A MG++VF+G+
Sbjct: 1159 VWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVA 1218
Query: 743 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQ 802
+T G+++L F++ ++ +++F++ L + LLG LHGLVFLPVVLS GP LV Q
Sbjct: 1219 MTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALV--Q 1276
Query: 803 EER 805
EE+
Sbjct: 1277 EEK 1279
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust.
Identities = 313/841 (37%), Positives = 476/841 (56%), Gaps = 65/841 (7%)
Query: 2 ISLTDICMKPLG------QDCATQSVLQYFKMD------PKNFDDFGGV------EHVKY 43
ISL DIC PL DC S+LQYF+ + N G +H Y
Sbjct: 465 ISLQDICYAPLNPHNTSLTDCCVNSLLQYFQNNHTLLLLTANQTLNGQTSLVDWKDHFLY 524
Query: 44 C------FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 96
C ++ T+ SC++ + P+ P A+GG+ G +YSEA A ++T+ +NN +
Sbjct: 525 CANAPLTYKDGTALALSCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSINN-YPADD 583
Query: 97 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 156
A WE+AF L + + + +AFS+E S+E+E+ R + D ISYL
Sbjct: 584 PRMAHAKLWEEAF--LKEMQSFQRSTADKFQIAFSAERSLEDEINRTTIQDLPVFAISYL 641
Query: 157 VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEV 216
++F YISL LG S + SK LGL GV +V+ +V+ ++GF+S +GV S+L+I++V
Sbjct: 642 IVFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQV 701
Query: 217 IPFLVLAVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLSEVLAFAV 273
+PFLVLAVG DN+ I V +R +P E R I L V PS+ L SLSE + F +
Sbjct: 702 VPFLVLAVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFL 760
Query: 274 GSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYA 333
G+ MPA R F++ + LA++ DFLLQ+TAFVAL+ D R E R D + C ++
Sbjct: 761 GALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCC------FS 814
Query: 334 DSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 393
+ ++K GLL + ++++ L ++ V+ LF+ A++ L I GL+Q
Sbjct: 815 SRNLPPPKQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQD 874
Query: 394 IVLPRDSYLQGYFNNISEHLRIGPPLYF-VVKNYNYSSESRQTNQLCSISQCDSNSLLNE 452
+ LP+DSYL YF ++ +L +GPP+YF YN+S+E+ N +CS + C+S SL +
Sbjct: 875 LALPKDSYLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEA-GMNAICSSAGCESFSLTQK 933
Query: 453 ISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSS 512
I AS P SY+A A+SW+DDF+ W++P + CCR +T G P D+ CPS +S
Sbjct: 934 IQYASEFPNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRG---PHKDE--FCPSTDTS 987
Query: 513 CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK 572
C + T L RP+T QF + LPWFLN P+ C KGG AY SV+L
Sbjct: 988 FNCLKNCMNRT-------LGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVNLS 1040
Query: 573 GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------MEIFPYSV 624
+G + AS F YH PL D+ ++RA+R ++ ++ L+ E+FPY++
Sbjct: 1041 --SDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPYTI 1098
Query: 625 FYMYFEQYLDIWRTALINLAIAIGAVFVVC-LITTCSFWSSAIILLVLTMIVVDLMGVMA 683
++++QYL + + LA+ FVVC L+ S + LL + MI+VD +G+MA
Sbjct: 1099 SNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDIRSGILNLLSIIMILVDTIGLMA 1158
Query: 684 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKN-QRMKEALGTMGASVFSGIT 742
+ I NAVS++NLV AVG++VEF HIT +F+VS+ +R K+A MG++VF+G+
Sbjct: 1159 VWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAGVA 1218
Query: 743 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQ 802
+T G+++L F++ ++ +++F++ L + LLG LHGLVFLPVVLS GP LV +
Sbjct: 1219 MTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVLEE 1278
Query: 803 E 803
+
Sbjct: 1279 K 1279
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 321/869 (36%), Positives = 483/869 (55%), Gaps = 90/869 (10%)
Query: 2 ISLTDICMKPLGQD------CATQSVLQYFKMD------PKNFDDFGGV------EHVKY 43
ISL DIC PL D C S+LQYF+ + N G +H Y
Sbjct: 465 ISLQDICYAPLNPDNTSLYDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDWKDHFLY 524
Query: 44 C------FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 96
C F+ T+ SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN +
Sbjct: 525 CANAPLTFKDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNNYPAGD- 583
Query: 97 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 156
+A WE+AF++ + M +T F +E S+E+E+ R + D SY+
Sbjct: 584 PRLAQAKLWEEAFLEEMRAFQRRMAGMFQVT--FMAERSLEDEINRTTAEDLPIFATSYI 641
Query: 157 VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEV 216
V+F YISL LG S + SK LGL GV +V+ +V+ ++GFFS +G++S+L+I++V
Sbjct: 642 VIFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQV 701
Query: 217 IPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAFAVG 274
+PFLVL+VG DN+ I V +R ++ P E I AL V PS+ L SLSE + F +G
Sbjct: 702 VPFLVLSVGADNIFIFVLEYQRLPRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLG 761
Query: 275 SFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD 334
+ PMPA R F++ + LAV+LDFLLQ++AFVAL+ D R E R+D C+K
Sbjct: 762 ALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQEL--- 818
Query: 335 SDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI 394
G G+ GLL + ++ +A L W + V+ LF+A S+ I GL+Q++
Sbjct: 819 PPPGQGE---GLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQEL 875
Query: 395 VLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEI 453
LP+DSYL YF ++ + +G P+YFV YN+SSE+ N +CS + C++ S +I
Sbjct: 876 ALPKDSYLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGM-NAICSSAGCNNFSFTQKI 934
Query: 454 SRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSC 513
A+ P+ SY+A PA+SW+DDF+ W++P + CCR + +G P D+ CP S+
Sbjct: 935 QYATEFPEQSYLAIPASSWVDDFIDWLTPSS--CCRLYISG---PNKDK--FCP---STV 984
Query: 514 GSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 573
S K+C + S RPS QF + LPWFLN P+ C KGG AY+ SV+L
Sbjct: 985 NSLNCLKNCMSITMGS----VRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTS 1040
Query: 574 ---------------YENGIVQA----------SSFRTYHTPLNRQIDYVNSMRAAREFS 608
+G + A S F YH PL DY ++RAARE +
Sbjct: 1041 DGQVLDTVAILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELA 1100
Query: 609 SRVSDSLQ--------MEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVV-CLITTC 659
+ ++ L+ E+FPY++ +++EQYL I L L++ + F V CL+
Sbjct: 1101 ANITADLRKVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGL 1160
Query: 660 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS 719
S + LL + MI+VD +G MA+ I NAVS++NLV AVG++VEF HIT +F++S+
Sbjct: 1161 DLRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAIST 1220
Query: 720 GDKN-QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLH 778
+R KEA +MG++VF+G+ +T L G++VL ++ ++ +++F++ L + LLG LH
Sbjct: 1221 KPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLH 1280
Query: 779 GLVFLPVVLSVFGP---PSRCMLVERQEE 804
GLVFLPV+LS GP P+ + +R EE
Sbjct: 1281 GLVFLPVILSYVGPDVNPALALEQKRAEE 1309
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 250/786 (31%), Positives = 412/786 (52%), Gaps = 90/786 (11%)
Query: 2 ISLTDICMKPLGQD-CATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKG 60
I D+C +P C +S QYF+ N D + ++ C + + C+ F+
Sbjct: 432 IGYQDLCFRPTEDSTCVIESFTQYFQGALPNKDSWK--RELQECGKFPVN---CLPTFQQ 486
Query: 61 PLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPM 120
PL + FS ++ A AFVVT + N T+ A WE+ + D +P
Sbjct: 487 PLKTNLL---FSDDDILNAHAFVVTLLLTN-------HTQSANRWEERLEEYLLDLKVP- 535
Query: 121 VQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSK 180
+ L ++F++E S+E+EL + D T+ ISYL+MF Y + L ++
Sbjct: 536 ---EGLRISFNTEISLEKELNNNN--DISTVAISYLMMFLYATWALRRKDG------KTR 584
Query: 181 VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-- 238
+LLG+SG+++V+ S++ + GF + G+KSTLII EVIPFL+LA+G+DN+ ++ H R
Sbjct: 585 LLLGISGLLIVLASIVCAAGFLTLFGLKSTLIIAEVIPFLILAIGIDNIFLITHEYDRNC 644
Query: 239 -QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDF 297
Q+ E ++ +I +A+ + PSI ++ L + F + +F+ MPA F++++ ++V+ +
Sbjct: 645 EQKPEYSIDQKIISAIGRMSPSILMSLLCQTGCFLIAAFVTMPAVHNFAIYSTVSVIFNG 704
Query: 298 LLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 357
+LQ+TA+V+++ R+ K++ G + K L +
Sbjct: 705 VLQLTAYVSILSLYEKRSNYKQI----------------TGNEETKESFLKTFY------ 742
Query: 358 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGP 417
+ K +I +F A+ S+ I+ GL+Q + +P+DSYL YF ++ L +GP
Sbjct: 743 -FKMLTQKRLIIIIFSAWFFTSLVFLPEIQFGLDQTLAVPQDSYLVDYFKDVYSFLNVGP 801
Query: 418 PLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFL 477
P+Y VVKN + + Q + C+ +SL N + + S I +P A+WLDD+
Sbjct: 802 PVYMVVKNLDLTKRQNQQKICGKFTTCERDSLANVLEQER---HRSTITEPLANWLDDYF 858
Query: 478 VWISPEAFGCCR-KFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDL---LK 533
++++P+ CCR K CPP PS + C TCF +
Sbjct: 859 MFLNPQNDQCCRLKKGTDEVCPPS-----FPS-----------RRCETCFQQGSWNYNMS 902
Query: 534 DRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNR 593
P F E L ++NA PS C GG Y+ ++ Y V AS FRT H PL
Sbjct: 903 GFPEGKDFMEYLSIWINA-PSDPCPLGGRAPYSTAL---VYNETSVSASVFRTAHHPLRS 958
Query: 594 QIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFV 652
Q D++ + R+S S ++++F YS FY++F QY + L + AI +F
Sbjct: 959 QKDFIQAYSDG----VRISSSFPELDMFAYSPFYIFFVQYQTLGPLTLKLIGSAIILIFF 1014
Query: 653 VCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712
+ + + SS ++ LV+TMI+VD+ +MA+L I LNAVS+VNL++ VG+ VEFCVHI
Sbjct: 1015 ISSVFLQNIRSSFLLALVVTMIIVDIGALMALLGISLNAVSLVNLIICVGLGVEFCVHIV 1074
Query: 713 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMY 768
+F+V + D N R+ +L T+G SV GITLTK +GV VL F+++++F V+YF+M+
Sbjct: 1075 RSFTVVPSETKKDANSRVLYSLNTIGESVIKGITLTKFIGVCVLAFAQSKIFDVFYFRMW 1134
Query: 769 LALVLL 774
L+++
Sbjct: 1135 FTLIIV 1140
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 279 bits (713), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 208/843 (24%), Positives = 381/843 (45%), Gaps = 69/843 (8%)
Query: 2 ISLTDICMKPLGQ--DCATQSVLQYFK-----------------MDPKNFDDFGG----- 37
I+L D+C +P+G DC S YF+ D FD F
Sbjct: 458 ITLDDVCYRPMGPGYDCLIMSPTNYFQGNKEHLDMKSNKEETVSEDDDAFDYFSSEATTD 517
Query: 38 --VEHVKYCF-----QHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNN 90
+ H+ C Q S SCM + GP P+ G S N+ A++ ++T V
Sbjct: 518 EWMNHMAACIDQPMSQKTKSGLSCMGTYGGPSAPNMVFGKNS-TNHQAANSIMMTILV-- 574
Query: 91 AVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAIT 150
R E +KA WEK F++ K+ +S + +F +E SI +E++ ++ + +T
Sbjct: 575 -TQRTEPEIQKAELWEKEFLKFCKEY---REKSPKVIFSFMAERSITDEIENDAKDEIVT 630
Query: 151 IVISYLVMFAYISLTLGD----TPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 206
+VI+ + Y++ +LG L S + S++ LG+ V++ +LS S G FS G
Sbjct: 631 VVIALAFLIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWGIFSMFG 690
Query: 207 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETR------ISNALVEVGPSI 260
+ + V F+V +GV ++V +Q++ +P + + + P++
Sbjct: 691 IHPVKNALVVQFFVVTLLGVCRTFMVVKYYAQQRVSMPYMSPDQCPEIVGMVMAGTMPAM 750
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRV 320
+SL +F +G F +PA R F ++A LAVL+D +L T F+AL V+D R + +
Sbjct: 751 FSSSLGCAFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQRELNGKP 810
Query: 321 DCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASI 380
+ ++ G + + ++ A L +I +F+A + ++
Sbjct: 811 EFFFPYQIKDLLGAYLIGRQRATDTFMTQFFHFQVAPFLMHRMTRIITGIIFIASFITTV 870
Query: 381 ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCS 440
L ++I G +Q + SY+ +F + + +GPP++F V N+ C+
Sbjct: 871 ILSSKISVGFDQSMAFTEKSYISTHFRYLDKFFDVGPPVFFTVDGELDWHRPDVQNKFCT 930
Query: 441 ISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPD 500
C S N ++ A + +Y++ +W+D++L WIS ++ CC+ + + D
Sbjct: 931 FPGCSDTSFGNIMNYAVGHTEQTYLSGEMYNWIDNYLEWISRKS-PCCKVYVH------D 983
Query: 501 DQPPCCPSGQSSCGSAGVCKDC------TTCFHHSDLLKDRPSTIQFKEKLPWFLNALPS 554
C + S C+ C + S ++ RPS F L FL P+
Sbjct: 984 PNTFCSTNRNKSALDDKACRTCMDFDYVANSYPKSSIMYHRPSIEVFYRHLRHFLEDTPN 1043
Query: 555 ASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPL--NRQIDYVNSMRAAREFSSRVS 612
+ C GG ++ +++ G +QAS F T+H L + D++ +M AR S R+
Sbjct: 1044 SECVFGGRASFKDAISFTS--RGRIQASQFMTFHKKLSISNSSDFIKAMDTARMVSRRLE 1101
Query: 613 DSLQ--MEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVF-VVCLITTCSFWSSAIILL 669
S+ +F YS + ++EQY I L I + VF ++C+ +A ++
Sbjct: 1102 RSIDDTAHVFAYSKIFPFYEQYSTIMPILTTQLFITVVGVFGIICVTLGIDVKGAACAVI 1161
Query: 670 VLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDK-NQRMKE 728
++ M I I +NA+S NLVM+ GI +EF V++ ++ S + R +
Sbjct: 1162 CQVSNYFHIVAFMYIFNIPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAES 1221
Query: 729 ALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 788
+G++G + SG +T + L + ++ VY+F+++L ++ +H L+ LP++L+
Sbjct: 1222 TVGSIGPIILSGPVVTMAGSTMFLSGAHLQIITVYFFKLFLITIVSSAVHALIILPILLA 1281
Query: 789 VFG 791
G
Sbjct: 1282 FGG 1284
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2
PE=3 SV=2
Length = 1274
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 228/846 (26%), Positives = 384/846 (45%), Gaps = 94/846 (11%)
Query: 2 ISLTDICMKPLGQD--CATQSVLQYFKMDPKNFDDFG------------GVEHVKYCFQH 47
+ L DIC KP+G++ CA S YF+ NF++ G EH+KYC ++
Sbjct: 429 VKLDDICYKPIGKNHGCAIMSPTNYFQNKWTNFENAGPPTIDDEIFDDQHWEHLKYCIRN 488
Query: 48 -----YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 102
S SC F GP+DP GG S + A + + V G E +A
Sbjct: 489 PLTVSTYSEMSCFGEFSGPIDPILVFGG-SNESIKGAEMYYTARTIMITVLIRGPE-DQA 546
Query: 103 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 162
+AWE AF+ + + + K+ F +E+S+ EE+ D I VI+ + ++
Sbjct: 547 IAWETAFLNM-----MSRYEMKHANFTFMTETSVAEEIHTAVETDKIVSVIACAAVLIWV 601
Query: 163 SLTLG--DTPHLS--SFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIP 218
LG P S S + K+L+ +S V++ ++SV S+G FS GV +T + V+
Sbjct: 602 ITMLGINHWPESSILSALVHHKLLISISAVMISVISVWCSIGMFSLFGVHATDNAIVVLF 661
Query: 219 FLVLAVGVDNMCILVHAVKRQQ--LELP------LETRISNALVEVGPSITLASL-SEVL 269
F++ +G++ + +++ + LP + RISN + P + SL
Sbjct: 662 FVITCLGINRIFVIIRTFQANGHCYGLPNISYREMNHRISNVMRRSIPIVLTNSLICSTC 721
Query: 270 AFAVGSFIP-----MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIP 324
F G +P MPA VF+ A LA+L+D + + L +D R + + P
Sbjct: 722 LFLAGGVLPYVSVSMPAVEVFARHAGLAILMDTAFYLLVMLPLFQYDARREMSGKCEIWP 781
Query: 325 CLKLSSSYA-----DSDKGIGQRKPGLLARYMKEVHATIL-----SLWGVKIAVISLFVA 374
+LS+ ++ G R P + K A +L +W +SL +A
Sbjct: 782 WYELSNESKINLCMEAVDG-NLRSP---VDWFKLAIAPLLLKKICRIWIATFFFVSLIIA 837
Query: 375 FTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQ 434
LC +E G Q + SYL +F N++E+L IGPPL+FVV+ + +
Sbjct: 838 ---CYCTLC--LEFGFNQVMAFSETSYLTKHFQNMNENLNIGPPLWFVVEGDVKWHDPKM 892
Query: 435 TNQLCSISQCDSNSLLNEISRASLIP--QSSYIAKPAASWLDDFLVWISPEAFGCCRKFT 492
N+ C+++ CD NS+ N+I + + +Y+ WLD +L ++ P G C K
Sbjct: 893 QNKFCTLAGCDDNSMGNKIRSLAYAENYKGNYLHGDVNIWLDSYLQFMHPR--GSCCKMD 950
Query: 493 NGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNAL 552
+C P + + S S+ TT + +F L FL
Sbjct: 951 GKQFCDPSN------ATHCSSCSSSSVASLTT------------TEYEFYRNLHHFLETP 992
Query: 553 PSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLN--RQIDYVNSMRAAREFSSR 610
PS CA GG +++L NG +Q++ F T+ LN I ++ R A+ +
Sbjct: 993 PSIQCAHGGMALAKPAINLT--RNGKIQSAYFSTFFKKLNLSDSIQLYDAWRFAKYLADD 1050
Query: 611 VSDSLQM---EIFPYSVFYMYFEQYLDI-WRTALINLAIAIGAVFVVCLITTCSFWSSAI 666
+ L++ +++ YS F+ Y+EQYL + + + + A + L + S +
Sbjct: 1051 IERELEIPGVKVYVYSTFFPYYEQYLTLSTTVYTLVVLVLFVAFVTISLFLRVNLAGSLV 1110
Query: 667 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDK-NQR 725
+ VL + LM M +L I +N VSV+N+ M++GIAVEF + H F S K +R
Sbjct: 1111 TVFVLLSSYLHLMEWMYLLGITVNVVSVINMAMSLGIAVEFFGQMLHGFYNSKKPKREER 1170
Query: 726 MKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 785
AL + G++ SGI ++ L F+ + V + Y+ + + L+ +HG+V++P
Sbjct: 1171 AFAALVSNGSTTLSGIFPAIMITAGCLSFADSRVLITYFCNQLVGIGLVCAVHGVVYMPT 1230
Query: 786 VLSVFG 791
+L++FG
Sbjct: 1231 LLAIFG 1236
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 97 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 153
NE + A AW++ +V++ + P S L F++ +++++ LK S I +
Sbjct: 374 NEDRAAAILEAWQRTYVEVVHQSVAP--NSTQKVLPFTT-TTLDDILKSFSDVSVIRVAS 430
Query: 154 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 213
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 431 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 485
Query: 214 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 271
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 486 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 545
Query: 272 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 326
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 546 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 600
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 579 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 638
++ + F Y L D+V ++ R + + SL + +P ++++EQY+ +
Sbjct: 955 IEYAQFPFYLNGLRDTSDFVEAIEKVRVICNNYT-SLGLSSYPNGYPFLFWEQYISLRHW 1013
Query: 639 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 698
L+++++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1014 LLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1073
Query: 699 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 758
+VGI VEF VH+ AF + GDKN R AL M A V G ++ L+GV++L S +
Sbjct: 1074 ASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1132
Query: 759 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1133 FIVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGP 1166
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 97 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 153
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRTYVEVVHQSV--AQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 154 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 213
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 214 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 271
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 272 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 326
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 579 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 638
++ + F Y L D+V ++ R S + SL + +P ++++EQY+ +
Sbjct: 969 IEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYT-SLGLSSYPNGYPFLFWEQYIGLRHW 1027
Query: 639 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 698
L+ +++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1028 LLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1087
Query: 699 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 758
+VGI VEF VH+ AF + GDKN+R AL M A V G ++ L+GV++L S +
Sbjct: 1088 ASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1146
Query: 759 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1147 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1180
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 97 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 153
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRMYVEVVHQSV--AQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 154 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 213
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 214 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 271
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 272 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 326
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 579 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 638
++ + F Y L D+V ++ R + + SL + +P ++++EQY+ +
Sbjct: 968 IEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYT-SLGIASYPNGYPFLFWEQYIGLRHW 1026
Query: 639 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 698
L+++++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1027 LLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAVPVVILI 1086
Query: 699 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 758
+VGI VEF VHI AF + GDKN+R AL M A V G ++ L+GV++L S +
Sbjct: 1087 ASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1145
Query: 759 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1146 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1179
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 8/222 (3%)
Query: 104 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 163
AW++ FVQLA+ E LP S+ + AFSS +++++ L+ S +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPANASQQIH-AFSS-TTLDDILRAFSEVSTTRVVGGYLLMLAYAC 410
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+GVD++ +L HA + + PL R+ L G S+ L S++ ++AF + + +P+PA R
Sbjct: 466 IGVDDIFLLAHAFTKAPPDTPLPERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALR 525
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 325
FS+ AA+ V +F + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCNFAAVMLVFPAILSLDLRRRHRQRLDVLCC 567
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 591 LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAV 650
L + D+V ++ AR + + + +P ++++EQYL + R L+ + I +
Sbjct: 917 LQKTADFVEAIEGARAACTEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 651 FVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVH 710
F+VC + S W++ +I+LVL M+ V+L G+M L I+L+A+ VV LV ++GI VEF VH
Sbjct: 976 FLVCALLLLSPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVH 1035
Query: 711 ITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 770
+ F S G +N R AL A V G ++ L+G+++L S + + Y+F +
Sbjct: 1036 VALGFLTSHGSRNLRAASALEQTFAPVTDG-AVSTLLGLLMLAGSNFDFIIRYFFVVLTV 1094
Query: 771 LVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEER 805
L LLG LHGL+ LPV+LS+ GPP + + V ++ +
Sbjct: 1095 LTLLGLLHGLLLLPVLLSILGPPPQVVQVYKESPQ 1129
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 587 YHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIA 646
Y T L V++++ R R +D + FP + + ++EQYL + T + AI+
Sbjct: 1132 YLTGLTDTAVIVDAIKDIRSVCERFTDQ-GLPNFPQGIAFTFWEQYLFL--TGNLMQAIS 1188
Query: 647 IGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIA 704
I + V C+I+ F W++ +++ +L ++ +L G M ++ I+LN VS V L+ AVGI
Sbjct: 1189 IITISVFCVISVLLFNPWAALMVVCILGIMTCELAGFMGLVGIKLNPVSAVTLITAVGIG 1248
Query: 705 VEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYY 764
VEF VH+ +F + G ++QR A+ + V G + + L+G+++L FS E V Y+
Sbjct: 1249 VEFTVHVVVSFLTALGTRSQRTSSAVDRVFVPVIHG-SFSTLLGILMLGFSEFEFVVKYF 1307
Query: 765 FQMYLALVLLGFLHGLVFLPVVLSVFGP 792
F + AL+ +G ++GL+ LPV+LS FGP
Sbjct: 1308 FIVMTALICIGIINGLILLPVLLSWFGP 1335
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 162/371 (43%), Gaps = 39/371 (10%)
Query: 104 AWEKAFVQLAKDELLPMVQSKN--LTLAFSSESSIEEELKRESTADAITIVISYLVMFAY 161
AW++ F + + + + N TL + +SI + L+ + I+ Y +M AY
Sbjct: 609 AWQRNFTKSLYNHKANVDEDGNERRTLHPLASTSIADMLEEFCQFNYTIILAGYALMLAY 668
Query: 162 ISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV 221
+T + S + L L+GV++V + + +G + G++ +++PFL
Sbjct: 669 AIVTQARFDNCLP-ATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLT 727
Query: 222 LAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 281
L +GVDNM +L+H + ++ + E G SI S++ +L+F G+ +P+PA
Sbjct: 728 LGIGVDNMFMLLHNYRDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPA 787
Query: 282 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL--------------- 326
R F +++ + +F+ +T + A+I D R + +R D + CL
Sbjct: 788 LRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLVCCLYGDTREESYSMISKP 847
Query: 327 KLSSSY---ADSDKGIGQRKPGL---------------LARYMKEVHATILSLWGVKIAV 368
K+ S A S+ I Q+ G+ L +++ + +S K+A+
Sbjct: 848 KIQSKRIIGAPSEASIMQQFDGITQAQMASSDDPAPWSLHSFIRYYYIPFISKPASKVAI 907
Query: 369 ISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK--NY 426
I A AS + GLE VLP + + ++ P++ V+K N
Sbjct: 908 IVGCCALLGASFIGMRQSTLGLELGDVLPEHTAPAQFLRARDKYFSFY-PMFAVIKGPNI 966
Query: 427 NYSSESRQTNQ 437
+Y+ + RQ +
Sbjct: 967 DYAHQQRQIDN 977
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 104 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 163
AW++ FVQLA+ E LP S+ + AFSS +++++ L S A +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPENASQQIH-AFSS-TTLDDILHAFSEVSAARVVGGYLLMLAYAC 410
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+GVD++ +L HA PL+ R+ L G S+ L S++ + AF + + +P+PA R
Sbjct: 466 IGVDDVFLLAHAFTEALPGTPLQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALR 525
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 325
FS+ AA+ V F+ + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCTFVAVMLVFPAILSLDLRRRHCQRLDVLCC 567
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 4/220 (1%)
Query: 591 LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAV 650
L + D+V ++ AR + + + +P ++++EQYL + R L+ + I +
Sbjct: 917 LQKTADFVEAIEGARAACAEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 651 FVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVH 710
F+VC + + W++ +I+LVL M+ V+L G+M L I+L+A+ VV LV +VGI VEF VH
Sbjct: 976 FLVCALLLLNPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVH 1035
Query: 711 ITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 770
+ F + G +N R AL A V G ++ L+G+++L S + V Y+F
Sbjct: 1036 VALGFLTTQGSRNLRAAHALEHTFAPVTDG-AISTLLGLLMLAGSHFDFIVRYFFAALTV 1094
Query: 771 LVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSS 810
L LLG LHGLV LPV+LS+ GPP +++ +E P + S
Sbjct: 1095 LTLLGLLHGLVLLPVLLSILGPPPE--VIQMYKESPEILS 1132
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 15/222 (6%)
Query: 574 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYL 633
Y NG+ QAS F I+ + S+R E R ++ +P ++++EQY+
Sbjct: 966 YLNGLRQASDF----------IEAIESVRTICEEFMRQG----IKNYPNGYPFLFWEQYI 1011
Query: 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVS 693
+ L+++++ + F+VC I + W++ +I+ +L M+ V+L G+M ++ I+L+A+
Sbjct: 1012 GLRHWFLLSISVVLACTFLVCAILLLNPWTAGVIVFILPMMTVELFGIMGLIGIKLSAIP 1071
Query: 694 VVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 753
VV L+ +VGI VEF VHI F + GD+N R A+ M A V G ++ L+GV++L
Sbjct: 1072 VVILIASVGIGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDG-AISTLLGVLMLA 1130
Query: 754 FSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795
S + + Y+F + L LLG L+GLV LPV+LS+ GPP+
Sbjct: 1131 GSEFDFIMRYFFAVLAILTLLGILNGLVLLPVLLSLMGPPAE 1172
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Query: 82 FVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELK 141
F Y +++ E T +W++ FV++ + P S N+ AFS+ +++ + +K
Sbjct: 359 FKDDYEIHDINWNEDKATAILESWQRKFVEVVHGSI-PQNSSSNV-YAFST-TTLNDIMK 415
Query: 142 RESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 201
S I + YL+M AY +T+ L S+ +GL+GV+LV LSV +G
Sbjct: 416 SFSDVSVIRVAGGYLLMLAYACVTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGL 470
Query: 202 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 261
S +G+ +V+P L L +GVD+M +L H+ + +P + R + L G S+
Sbjct: 471 CSLLGLSFNAATTQVLPSLALGIGVDDMFLLGHSFTETRSNIPFKERTGDCLRRTGTSVA 530
Query: 262 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVD 321
L S++ ++AF + + +P+PA R FS+ AA+ V+ +F + + F A++ D R EDKR+D
Sbjct: 531 LTSVNNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMALLIFPAILSLDLHRREDKRLD 590
Query: 322 CIPCL 326
+ C
Sbjct: 591 ILCCF 595
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 180/382 (47%), Gaps = 44/382 (11%)
Query: 94 REGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIV- 152
+ +++++ AW F+ D + + + FSS + +L+ E+T+ + +
Sbjct: 287 EDPEDSERSQAWLTHFLDHFNDMKSSLTLEEIEVVYFSS---LSRQLEFEATSKTVIPLF 343
Query: 153 -ISYL--VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 209
++Y+ ++FA +S + D I +K+ + + GV V +SV+ G +GV
Sbjct: 344 HLAYILIILFAVVSCSRLDC-------IRNKMCVAVFGVFSVAMSVVSGFGLMLHLGVPF 396
Query: 210 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVL 269
+I+ PFL+L VGVD+M I++ A ++ L + R+SN+ +V SIT+ +++ VL
Sbjct: 397 VIIVANS-PFLILGVGVDDMFIMISAWQKTSLSESIRERLSNSYSKVAVSITITTITNVL 455
Query: 270 AFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD---------FLRAEDKRV 320
AF G + + F ++ +L + IT F A++ D +L D++
Sbjct: 456 AFYTGITSSFRSVQYFCIYTGTTLLFCYFYSITCFGAVMALDGKREVAWSRWLEKPDQKY 515
Query: 321 D------CIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVA 374
C+P L + + + + + ++ L+ K V+ L++
Sbjct: 516 SSLKKSCCVPFGSLIDKHGEDNHPMN--------LFFRDYFGPFLTTSKAKFIVVLLYIF 567
Query: 375 FTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVK---NYNYSS 430
+ ++SI C +++ GL+ + + DSY+ YFN ++ GP + +V NY + +
Sbjct: 568 YIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVEEDYFSDYGPRVMVIVTESVNY-WDN 626
Query: 431 ESRQTNQLCSISQCDSNSLLNE 452
+ RQ C ++Q + N +++
Sbjct: 627 DVRQKLDKC-MTQFEENEYVDK 647
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 107/186 (57%), Gaps = 13/186 (6%)
Query: 611 VSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLI----TTCSFWSSAI 666
++++ ++ + Y+ ++YF+QY I + N+ IA A+F+V L+ CS W
Sbjct: 728 IAENCEVPLMVYNQAFIYFDQYAAIIENTVRNVMIASTAMFIVSLLLIPHPVCSLW---- 783
Query: 667 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDK--NQ 724
+ + ++V + G MA + L+++S++NLV+ +G + +F HI++AF VSS + N+
Sbjct: 784 VTFAIASVIVGVTGFMAFWNVNLDSISMINLVICIGFSFDFSAHISYAF-VSSTEPSVNK 842
Query: 725 RMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLP 784
+ EAL +G V ++ ++GV VL ++ +F ++ M+L + G HGL+F+P
Sbjct: 843 KSIEALYLLGYPVLQS-AISTIIGVCVLSAAKAYIFRTFFKIMFLVM-FFGAAHGLIFIP 900
Query: 785 VVLSVF 790
V L+ F
Sbjct: 901 VFLTFF 906
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI + +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLK 327
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAK 466
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 71/367 (19%)
Query: 89 NNAVDREGNETKKAV----AWEKAFVQLAKDELLPMVQSK---NLTLAFSSESSIEEELK 141
N V G +KA AW++ F + + E L QS+ N + S +++++ L
Sbjct: 365 NYKVHHLGWTQEKAAEVLNAWQRNFSR--EVEQLLRKQSRIATNYDIYVFSSAALDDILA 422
Query: 142 RESTADAITIVI--SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 199
+ S A++IVI + V++A+ +L P + + +G++GV+L+ S +
Sbjct: 423 KFSHPSALSIVIGVAVTVLYAFCTLLRWRDP------VRGQSSVGVAGVLLMCFSTAAGL 476
Query: 200 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV----KRQQLELPLETRISNALVE 255
G + +G+ +V+PFL L +GVD++ +L A +R+Q +L L+ +
Sbjct: 477 GLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAYAESNRREQTKLILK--------K 528
Query: 256 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 315
VGPSI ++ S +F +FIP+PA +VF + AA+ + + + F A+I D R
Sbjct: 529 VGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVFPAMISLDLRRR 588
Query: 316 EDKRVD----CIPCLKLSSSYA------DSDKGIGQRKPG-------------------- 345
R D C P K A +++ G G R P
Sbjct: 589 TAGRADIFCCCFPVWKEQPKVAPPVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLLEQRA 648
Query: 346 ------------LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 393
LA + + + L VK + F+A ++S+ TR++ GL+
Sbjct: 649 DIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDII 708
Query: 394 IVLPRDS 400
++P+DS
Sbjct: 709 DLVPKDS 715
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Query: 620 FPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLM 679
+P + ++++EQY+ + + + LA + A V+ + S W++ +++L + + +
Sbjct: 937 YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLLLSVWAAVLVILSVLASLAQIF 996
Query: 680 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFS 739
G M +L I+L+A+ V L+++VG+ + F V I+ F S G++ +R++ ++ +
Sbjct: 997 GAMTLLGIKLSAIPAVILILSVGMMLCFNVLISLGFMTSVGNRQRRVQLSMQMSLGPLVH 1056
Query: 740 GITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLV 799
G+ LT V V +L S E + ++ + L ++ +G + L+ P++LS+ GP + + +
Sbjct: 1057 GM-LTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCVGACNSLLVFPILLSMVGPEAELVPL 1115
Query: 800 ERQEERPSVSSL 811
E + + S L
Sbjct: 1116 EHPDRISTPSPL 1127
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGVAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKI-----DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 339
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL S K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLP-------SAKPV 468
Query: 340 GQ 341
GQ
Sbjct: 469 GQ 470
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 12/238 (5%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKI-----DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDK 337
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL + S +
Sbjct: 416 EFCLFAVVGLVSDFFLQMPFFTTVLSIDIRRMELADLNKRLPPEACLPPAKPVGRSAR 473
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 15/246 (6%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLKLSSSYADSD 336
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K A +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYE 475
Query: 337 KGIGQR 342
+ + R
Sbjct: 476 RQLAVR 481
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 15/246 (6%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKI-----DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLKLSSSYADSD 336
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K A +
Sbjct: 416 EFCLFAVVGLVSDFFLQMFFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYE 475
Query: 337 KGIGQR 342
+ + R
Sbjct: 476 RQLAVR 481
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 163
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 164 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 223
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKI-----DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 224 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 283
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGYFTLVPAIQ 415
Query: 284 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCL 326
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACL 462
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 122 QSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYISLTLGDTPHLSSFYISSK 180
Q + + +S+ + K E A+ I +V +Y+++FAYI + + SK
Sbjct: 256 QHPSTNSSAASQHIVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKID-----LVKSK 310
Query: 181 VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ 240
L L+ VV V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 311 WGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTP 370
Query: 241 LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 300
++L ++ RI+ L I +E+ +G F +PA + F +FA + ++ DF LQ
Sbjct: 371 VDLEVKLRIAQGLRNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 430
Query: 301 ITAFVALIVFDFLRAE----DKRVD---CIPCLKLSSSYAD 334
+ F ++ D R E +KR+ CIP K + D
Sbjct: 431 MFFFTTVLSIDIRRMELADLNKRIPAEACIPPPKPGAKRYD 471
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 28/320 (8%)
Query: 140 LKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFY-ISSKVLLGLSGVVLVMLSVLGS 198
L R+ +A ++ + + AYI + L F I +K+ + GV+ L+V+
Sbjct: 370 LSRQLEFEATSVTVIPVFHLAYILIILFAVTSCFRFDCIRNKMCVAAFGVISAFLAVVSG 429
Query: 199 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGP 258
G IGV +I+ PFL+L VGVD+M I++ A + L + R+SN +
Sbjct: 430 FGLLLHIGVPFVIIVANS-PFLILGVGVDDMFIMISAWHKTNLADDIRERMSNVYSKAAV 488
Query: 259 SITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD------- 311
SIT+ +++ +LA G + + F ++ + +L + IT F A + D
Sbjct: 489 SITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVC 548
Query: 312 --FLRAED------KRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWG 363
+L+ D K+ C P + + I + + ++ L+
Sbjct: 549 LCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPI--------SLFFRDYFGPFLTRSE 600
Query: 364 VKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFV 422
K V+ ++V + ++SI C ++ GL+ + + DSY+ YFN + GP + +
Sbjct: 601 SKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVI 660
Query: 423 V-KNYNY-SSESRQTNQLCS 440
V K +Y + RQ + C+
Sbjct: 661 VTKKVDYWDKDVRQKLENCT 680
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 16/254 (6%)
Query: 558 AKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM 617
AK H + N D++ G ++A L + D + RA E+ +V ++ Q
Sbjct: 595 AKEPHLKFRN--DIRFTMMGKIEAMKMMFRVRKLGKDND---APRA--EYMRKVMENSQF 647
Query: 618 EIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVD 677
F Y ++ +Q + ++++ AI + +C++ S+ I + + +
Sbjct: 648 NGFVYDTSFLLVDQQMTTVYNVIVDVVSAILTMLSICVLMVPRPVSAMCIAFAILSVNIG 707
Query: 678 LMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASV 737
++G +A +L+ +S++ +VM+VG +V++ H T F + ++ R+++ L M +
Sbjct: 708 VIGALAATNTRLDIISMITIVMSVGFSVDYVTHTTFHFVIQ---RDNRLEKCLLVMTEPI 764
Query: 738 FSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 797
L+ +GV +L F + + V + +V LG LHGL+FLPV+L P S M
Sbjct: 765 LQS-ALSTAIGVSLLSFVHSYI-VRTFVNTVFFVVGLGILHGLIFLPVLLDTIVPDSEYM 822
Query: 798 L----VERQEERPS 807
+ EE P+
Sbjct: 823 VPYEPQHEDEENPN 836
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 16/196 (8%)
Query: 118 LPMVQSKNLTLAFSSESSIEEELKREST-----ADAITIVISYLVMFAYISLTLGDTPHL 172
+P + N T+ +SS S+ +E++R ++V+ MFA SL +
Sbjct: 235 IPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMPWTSLVLVVFCMFACSSLNI------ 288
Query: 173 SSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIL 232
+ S+ +G + ++ + S + L ++ ++PFLV+++G DNM ++
Sbjct: 289 ----VKSQPFIGFFAMFNATMATIASTSLLLYLQYP-FLPLVFIMPFLVVSIGTDNMFLM 343
Query: 233 VHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALA 292
+ + + + E R +AL E S+ L SL++ L+FA+GS A RVF + A+A
Sbjct: 344 LKSWRMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGSISDFHAVRVFCTYCAMA 403
Query: 293 VLLDFLLQITAFVALI 308
+L FL Q+T F A++
Sbjct: 404 ILFMFLFQVTFFNAVM 419
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/436 (22%), Positives = 181/436 (41%), Gaps = 68/436 (15%)
Query: 79 ASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 136
A A +TY + G+ T+ + WE F +L + + + L L + S+
Sbjct: 170 ARAIQITYYLQTY----GSATQDLIGEKWENEFCKLIRKL---QEEHQELQLYSLASFSL 222
Query: 137 EEELKRESTADAITIVISYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLS 194
+ + S +++S +++ A +S ++ D + SK LGL GV+ V +S
Sbjct: 223 WRDFHKTSILARSKVLVSLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCIS 275
Query: 195 VLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALV 254
++ + G F K ++ IPF + G + L+ +R + LP + RI++A
Sbjct: 276 IITAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRIADAYS 334
Query: 255 EVGPSITLASLSEVLAFAVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDF 312
+V + T+ S + F +G+ F + A +VF +++LL++ + F + +VF
Sbjct: 335 DVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAG 394
Query: 313 LRAEDKRVDCIPCLKL-SSSYAD-----------------SDKGIGQRKPGLLARYMKEV 354
+ E R I C K+ S+ Y D S + + +++E
Sbjct: 395 -QLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREH 453
Query: 355 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDS-------YLQGYFN 407
+ ++ VK V+ L++ + S C +I G +L DS Q YF+
Sbjct: 454 YNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGANIINLLASDSPSVSYAMVQQKYFS 513
Query: 408 NISEHLRIGPPLYFVVKNYNYSSES---------------RQTNQLCSISQCDSNSLLNE 452
N S IG +Y ++ +N S + Q Q +S +N+ +
Sbjct: 514 NYSP--VIGFYVYEPLEYWNSSVQDDLRRLCSGFTAVSWVEQYYQFLKVSNVSANNKSDF 571
Query: 453 ISRASLIPQSSYIAKP 468
IS + QSS++ KP
Sbjct: 572 IS----VLQSSFLKKP 583
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 118/254 (46%), Gaps = 18/254 (7%)
Query: 548 FLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAR 605
F++ L S+ K + N + G E+ I+ + + T ++Q + + R
Sbjct: 571 FISVLQSSFLKKPEFQHFRNDIIFSKAGDESNIIASRLYLVARTSRDKQKEITEVLEKLR 630
Query: 606 EFSSRVSDSLQMEIFPYSVFYMYFEQY-LDIWRTALI---NLAIAIGAVFVVCLITTCSF 661
S +S S++ +F S +M + Y L + LI + + + F + + +F
Sbjct: 631 PLS--LSKSIRFIVFNPSFVFM--DHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNF 686
Query: 662 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGD 721
W ++L +T I + ++G+M + + ++ +S++ L+ + A++ C + F +++
Sbjct: 687 W----LILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLFTFVLATEH 742
Query: 722 -KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 780
+ Q +K +L G ++ +T + L+G++ L F + + F+ L LH
Sbjct: 743 TRTQCIKSSLQDHGTAILQNVT-SFLIGLVPLLFVPSNL-TFTLFKCLLLTGGCTLLHCF 800
Query: 781 VFLPVVLSVFGPPS 794
V LPV L+ F PPS
Sbjct: 801 VILPVFLTFF-PPS 813
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 167/393 (42%), Gaps = 50/393 (12%)
Query: 79 ASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 136
A A +TY + G+ T+ + WE F +L + + ++L L + S+
Sbjct: 228 ARAIQITYYLQTY----GSATQDLIGEKWENEFCKLMRKL---QEEHQDLQLYSLASFSL 280
Query: 137 EEELKRESTADAITIVISYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLS 194
+ + S +++S +++ A +S ++ D + SK LGL GV+ V +S
Sbjct: 281 WRDFHKTSILTRSKVLVSLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCIS 333
Query: 195 VLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALV 254
+ + G F K ++ IPF + G + L+ +R + LP + R+++A
Sbjct: 334 IATAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYS 392
Query: 255 EVGPSITLASLSEVLAFAVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDF 312
+V + T+ S + F +G+ F + A ++F +++LL++ + F + +VF
Sbjct: 393 DVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAG 452
Query: 313 LRAEDKRVDCIPCLKL-SSSYAD-----------------SDKGIGQRKPGLLARYMKEV 354
+ E R I C K+ S+ Y D S + + +++E
Sbjct: 453 -QLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREH 511
Query: 355 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDS-------YLQGYFN 407
+ ++ VK V+ L++ + S C +I G +L DS Q YF+
Sbjct: 512 YNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFS 571
Query: 408 NISEHLRIGPPLYFVVKNYNYSSESRQTNQLCS 440
N S IG +Y ++ +N SS +LCS
Sbjct: 572 NYSP--VIGFYVYEPLEYWN-SSVQEDLQRLCS 601
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 121/258 (46%), Gaps = 26/258 (10%)
Query: 548 FLNALPSASCAKGGHGAYTNSV--DLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAR 605
F++ L S+ K + N + G EN I+ + + T ++Q + + + R
Sbjct: 629 FISVLQSSFLKKPEFQHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLR 688
Query: 606 EFSSRVSDSLQMEIF-PYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLIT------- 657
S +S S++ +F P VF ++ + + + IA V +V ++T
Sbjct: 689 PLS--LSKSIRFIVFNPSFVFTDHYS------LSVTVPVLIAGFGVLLVLILTFFLVIHP 740
Query: 658 TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV 717
+FW ++L +T I + ++G+M + + ++ +S++ L+ + A++ C + + F +
Sbjct: 741 LGNFW----LILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVL 796
Query: 718 SSGD-KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGF 776
++ + Q +K +L G ++ IT + L+G++ L F + + F+ L
Sbjct: 797 ATEHTRTQCIKSSLQEHGTAILQNIT-SFLIGLLPLLFVPSNL-TFTLFKCLLLTGGCTL 854
Query: 777 LHGLVFLPVVLSVFGPPS 794
LH V LPV L+ F PPS
Sbjct: 855 LHCFVILPVFLTFF-PPS 871
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 177 ISSKVLLGLSGVVLVMLSVLGSVG-FFSAIG-VKSTLIIMEVIPFLVLAVGVDNMCILVH 234
+ K LGL GV+ + ++ + + G FF + G STL+ IPF + G + L+
Sbjct: 299 LRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLL---GIPFFAMGHGTKGVFELLA 355
Query: 235 AVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FIPMPACRVFSMFAALA 292
+R + LP + R+++A +V T+ S ++ F +G+ F + + +VF +A
Sbjct: 356 GWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASPFTNIESVKVFCQSMCVA 415
Query: 293 VLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSS-SYADSDKGIGQRKPGLLARYM 351
VL+++ + + + +VF + E R + C K+ S Y D R+P M
Sbjct: 416 VLVNYFYVFSFYGSCLVFAG-QLEQNRYHSVFCCKIPSVEYLD-------RQPTWFKTMM 467
Query: 352 KEVH 355
+ H
Sbjct: 468 SDGH 471
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 632 YLDIWRTALINLAIAIGAVFVVCLITTC--------SFWSSAIILLVLTMIVVDLMGVMA 683
++D + +++I+ + G + LI T +FW ++L +T + + ++G+M
Sbjct: 690 FMDRYSSSIISPILTSGFSVLTILILTFFLVINPLGNFW----LILTVTSVELGVLGLMT 745
Query: 684 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGD-KNQRMKEALGTMGASVFSGIT 742
+ + ++++S++ L+ + A++ C + F +++ + Q +K +L GA++ T
Sbjct: 746 LWNVDMDSISILCLIYTLNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQN-T 804
Query: 743 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794
++G++ L F + + F+ L LH V LPV L+ F PPS
Sbjct: 805 SCFVIGIMPLLFVPSNL-TYTLFKCSLLTAGCTVLHCFVILPVFLTFF-PPS 854
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 27/261 (10%)
Query: 102 AVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMF 159
A WE +F K L SK ++S SS+ E+ ++ S +V S + V
Sbjct: 226 AERWESSFCDTVK--LFQKSNSKVKIYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTM 282
Query: 160 AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPF 219
A + ++ D + SK LGL G+V + L+ L + G + G K + V PF
Sbjct: 283 AILCCSMQDC-------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PF 334
Query: 220 LVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FI 277
++L G+ ++ + ++ + + ++ R + + S +L + ++ F +G+ F
Sbjct: 335 VMLGHGLYGTFEMLSSWRKTREDQHVKERTAEVYADSMLSFSLTTAMYLVTFGIGASPFT 394
Query: 278 PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDK 337
+ A R+F + +A+L ++L ++ + + +VF E+ I C K+
Sbjct: 395 NIEAARIFCCNSCIAILFNYLYVLSFYGSSLVFTGY-IENNYQHSIFCRKVPK------P 447
Query: 338 GIGQRKPG-----LLARYMKE 353
+ Q KP L AR+ +E
Sbjct: 448 DVLQEKPAWYRFLLTARFSEE 468
Score = 40.4 bits (93), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 667 ILLVLTMIVVD--LMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKN 723
+ + LT++ V+ ++G M + K++L+ +SV+ L+ + ++ C + F + +
Sbjct: 725 VWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKDFTRT 784
Query: 724 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFL 783
+ +K AL G ++ L +VG+ L + + + ++L + + F H L
Sbjct: 785 KWVKNALEVHGVAILQSY-LCYIVGLFPLAAVPSNLTCTLFRCLFL-IAFVTFFHCFAIL 842
Query: 784 PVVLSVFGPPS 794
PV+L+ F PPS
Sbjct: 843 PVILT-FLPPS 852
>sp|Q6R5J2|DISP1_DANRE Protein dispatched homolog 1 OS=Danio rerio GN=disp1 PE=2 SV=1
Length = 1464
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 605 REFSSRVSDSLQMEIF--PYSVFYMYFEQYLDIWR-------TALINLAIAIGAVFVVCL 655
+F V +Q E+ P + Y +F L+ + LI +A+++ F V L
Sbjct: 923 HQFYREVDTWIQEELRDAPEGLSYGWFVSNLEFYDLQDSLSDGTLIAMALSVVVAFSVML 982
Query: 656 ITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF 715
+TT + S ++ + + +G + +L +LN + V + +AVG++V+F VH A+
Sbjct: 983 LTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAY 1042
Query: 716 SVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL- 773
++ D+ ++ +L MG+++ T + G +++ + V +L L++
Sbjct: 1043 RLAPEPDREGKVVFSLSRMGSAIAMAALTTFVAGAMMM---PSTVLAYTQLGTFLMLIMC 1099
Query: 774 LGFLHGLVFLPVVLSVFGPPSRC 796
+ + F + + GP C
Sbjct: 1100 ISWAFATFFFQCMCRLLGPQGTC 1122
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Drosophila
melanogaster GN=Hmgcr PE=2 SV=2
Length = 920
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 144 STADAI--TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 201
+ AD I TIV V++ Y S + SK +LG++G+ V S + +
Sbjct: 103 NAADVILMTIVRCTAVLYCYYQFC-------SLHRLGSKYVLGIAGLFTVFSSFIFTTAI 155
Query: 202 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 261
+G + + + + FL+L + + N L + + I+ L +GP+I+
Sbjct: 156 IKFLGSDISEL-KDALFFLLLVIDLSNSGRLAQLALSGSNQAEVTQNIARGLELLGPAIS 214
Query: 262 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL--IVFDFLRA 315
L ++ EVL VG+ + V MFA L+VL+++++ +T + A ++FD R+
Sbjct: 215 LDTIVEVLLVGVGTLSGVQRLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 270
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 99/213 (46%), Gaps = 15/213 (7%)
Query: 102 AVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMF 159
A WE +F + L SK ++S SS+ E+ ++ S +V S + V
Sbjct: 226 AERWESSFCDTVR--LFQKSNSKVKMYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTM 282
Query: 160 AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPF 219
A + ++ D + SK LGL G+V + L+ L + G + G K + V PF
Sbjct: 283 AILCCSMQDC-------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PF 334
Query: 220 LVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FI 277
++L G+ ++ + ++ + + ++ R + + S +L + ++ F +G+ F
Sbjct: 335 VMLGHGLYGTFEMLSSWRKTREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFT 394
Query: 278 PMPACRVFSMFAALAVLLDFLLQITAFVALIVF 310
+ A R+F + +A+ ++L ++ + + +VF
Sbjct: 395 NIEAARIFCCNSCIAIFFNYLYVLSFYGSSLVF 427
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 667 ILLVLTMIVVD--LMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKN 723
+ + LT++ V+ ++G M + K++L+ +SV+ L+ + ++ C + F + +
Sbjct: 725 VWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPMLSTFVLGKDFTRT 784
Query: 724 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFL 783
+ +K AL G ++ L +VG+I L + + + ++L + + F H L
Sbjct: 785 KWVKNALEVHGVAILQSY-LCYIVGLIPLAAVPSNLTCTLFRCLFL-IAFVTFFHCFAIL 842
Query: 784 PVVLSVFGPPS 794
PV+L+ F PPS
Sbjct: 843 PVILT-FLPPS 852
>sp|Q3TDN0|DISP1_MOUSE Protein dispatched homolog 1 OS=Mus musculus GN=Disp1 PE=1 SV=2
Length = 1521
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 640 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 699
LI + +++ F V L+TT + S ++ + + +G + +L +LN + V + +
Sbjct: 983 LIAMGLSVAVAFSVMLLTTWNIIISLYAIVSIAGTIFVTVGSLVLLGWELNVLESVTISV 1042
Query: 700 AVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 758
AVG++V+F VH A+ ++ D+ ++ +L MG+++ T + G +++ +
Sbjct: 1043 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRMGSAIAMAALTTFVAGAMMM---PST 1099
Query: 759 VFVVYYFQMYLALVL-LGFLHGLVFLPVVLSVFGPPSRC 796
V ++ LV+ + + F + GP C
Sbjct: 1100 VLAYTQLGTFMMLVMCVSWAFATFFFQCLCRCLGPQGTC 1138
>sp|Q9Y7D2|HMDH_ASPTE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus PE=3 SV=2
Length = 1048
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 166/446 (37%), Gaps = 106/446 (23%)
Query: 131 SSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSS-FYISSKVLLGLSGVV 189
SS S + T D + I +SYL M + HL S F++++ VLL
Sbjct: 206 SSWLSFLHRVHHAETVDLVIIGLSYLAMNMTVVSLFRVMRHLGSRFWLAASVLLS----- 260
Query: 190 LVMLSVLGSVGFFSAIGVKST-------LIIMEVIPFLVLAVGVDNMCILVHAV------ 236
G+ F +G+ +T L++ E IP+LVL VG + L AV
Sbjct: 261 -------GAFAFVLGLGITTTCDVPVDMLLLFEGIPYLVLTVGFEKPIQLTRAVLCVSEE 313
Query: 237 -----------------KRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-P 278
RQ +P I A+ G I + L E+ A A+G+ + P
Sbjct: 314 LWGGGQRQVPNGASSDDSRQNQLIP--NIIQLAVDREGWYIVRSYLLEIGALALGAVLRP 371
Query: 279 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 338
+ F AA +L+D +L T + ++ C+KL + S G
Sbjct: 372 KDSLGHFCFLAAWTLLIDAVLLFTFYATIL----------------CVKLEITRIRSPGG 415
Query: 339 IGQ---RKP-GLLARYMKEVHATILSLWGVKIAVISLFVAFT----------LASIAL-C 383
+GQ + P G+ +K + T L V V+ F+ + +A+ L
Sbjct: 416 LGQVNAKHPSGIFGHKVKSTNITWWKLLTVGGFVLCHFLQLSPFFYRVMGEYMANGTLPP 475
Query: 384 TRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN--YNYSSESRQT------ 435
T + P E L + YL + + PPL +V+++ +N S+ R T
Sbjct: 476 TAVSPFKEAANGL-NEIYLTARVEGFETRVTVLPPLQYVLESAGFNISATKRSTFDGVLD 534
Query: 436 ------NQLCSISQCDSNSLLN----EISRASLIPQSSYIAKPAASWLDDFLVWISPEAF 485
+LC + + +LN +R PQ+ A P S+L +PE
Sbjct: 535 GLESPLGRLCLMGALVVSLVLNNHLIHAARWHAWPQARESAVPDGSYLSVPCSATAPEV- 593
Query: 486 GCCRKFTNGSYCPPDDQPPCCPSGQS 511
C R PP++ S Q+
Sbjct: 594 -CTR--------PPEETEALLKSNQA 610
>sp|O42335|PTC1_CYNPY Protein patched homolog 1 (Fragment) OS=Cynops pyrrhogaster GN=PTC1
PE=2 SV=1
Length = 257
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 97 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 153
NE K A AW++ +V++ + P S L+F++ +++++ LK S I +
Sbjct: 151 NEDKAAAILEAWQRMYVEVVHQSV-PQ-NSTQKVLSFTT-TTLDDILKSFSDISVIRVAS 207
Query: 154 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 207
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 208 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGI 256
>sp|A3KFU9|PTHD2_MOUSE Patched domain-containing protein 2 OS=Mus musculus GN=Ptchd2 PE=2
SV=1
Length = 1347
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 139 ELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 198
E++R D + IS + A + + + LS F I+S +GLS +V + L
Sbjct: 409 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIAS---IGLSCLVALFL----- 460
Query: 199 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVG 257
+ G++ I+ V F+++ +GVD++ + ++ ++ LE P + R+ + + G
Sbjct: 461 --YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDP-QLRMIHTIQTAG 517
Query: 258 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 293
+ SL+ A+A F +PA F +F +L V
Sbjct: 518 KATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 553
Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 35/115 (30%)
Query: 652 VVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 711
+VCL+ T +WS ++ AV ++L + VG +V++CVH+
Sbjct: 1173 IVCLVVTIMYWSG----------------------WEMGAVEAISLSILVGSSVDYCVHL 1210
Query: 712 THAFSVS------------SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCF 754
+ ++ S + R EA+ +G ++ S LT ++ + L F
Sbjct: 1211 VEGYLLAGENLPPQLSQDPSSQRQWRTLEAVRHVGVAIVSS-ALTTVIATVPLFF 1264
>sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3
Length = 1524
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 640 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 699
LI + +++ F V L+TT + S ++ + + +G + +L +LN + V + +
Sbjct: 985 LIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISV 1044
Query: 700 AVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 758
AVG++V+F VH A+ ++ D+ ++ +L +G+++ T + G +++ +
Sbjct: 1045 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMM---PST 1101
Query: 759 VFVVYYFQMYLALVL-LGFLHGLVFLPVVLSVFGPPSRC 796
V ++ L++ + + F + GP C
Sbjct: 1102 VLAYTQLGTFMMLIMCISWAFATFFFQCMCRCLGPQGTC 1140
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query: 133 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLV- 191
S ++ L ++ AI IVI LVM Y S +I+ + + ++V
Sbjct: 493 HSLFQDYLLMDTVYPAIAIVIVLLVMCVYT----------KSMFITLMTMFAIISSLIVS 542
Query: 192 --MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELP-LETR 248
+ V+ FF + + + +I+ + +G D+ +L + + P ET
Sbjct: 543 YFLYRVVFHFEFFPFMNLTALIIL--------VGIGADDAFVLCDVWNYTKFDKPHAETS 594
Query: 249 --ISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 306
+S L S+ + S + AF + A R F ++A A+L++++L +T A
Sbjct: 595 ETVSITLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPA 654
Query: 307 LIVF 310
++V
Sbjct: 655 VVVL 658
>sp|O42334|PTC2_CYNPY Protein patched homolog 2 (Fragment) OS=Cynops pyrrhogaster GN=PTC2
PE=2 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 105 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISL 164
W++ FV+LA+ S + AFS+ +++ + +K S I + YL+M AY +
Sbjct: 160 WQRKFVELAQQSAPE--NSSQIIHAFST-TTLNDIMKSFSDVSVIRVAGGYLLMLAYACV 216
Query: 165 TLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 207
T+ L S+ +GL+GV+LV LSV +G S +G+
Sbjct: 217 TM-----LRWDCTKSQGAVGLAGVLLVALSVASGLGLCSLLGI 254
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L V + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLVDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2
SV=2
Length = 1392
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 139 ELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 198
E++R D + IS + A + + + LS F I+S +GLS +V + L
Sbjct: 454 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIAS---IGLSCLVALFL----- 505
Query: 199 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVG 257
+ G++ I+ V F+++ +GVD++ + ++ ++ LE P + R+ + + G
Sbjct: 506 --YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDP-QLRMIHTVQTAG 562
Query: 258 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 293
+ SL+ A+A F +PA F +F +L V
Sbjct: 563 KATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 598
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q0C8L9|HMDH_ASPTN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_09965
PE=3 SV=1
Length = 1048
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 137/352 (38%), Gaps = 76/352 (21%)
Query: 131 SSESSIEEELKRESTADAITIVISYLVM-FAYISLTLGDTPHLSSFYISSKVLLGLSGVV 189
SS S +K T D + I +SYL M +SL S F++++ VLL
Sbjct: 206 SSWLSFLHRVKHAETVDLVIIGLSYLAMNMTVVSLFRVMRQLGSRFWLATSVLLS----- 260
Query: 190 LVMLSVLGSVGFFSAIGVKST-------LIIMEVIPFLVLAVGVDNMCILVHAV------ 236
G+ F +G+ +T L++ E IP+LVL VG + L AV
Sbjct: 261 -------GAFAFVLGLGITTTCDVPVDMLLLFEGIPYLVLTVGFEKPIQLTRAVLCVSEE 313
Query: 237 KRQQLELPLETRISN---------------ALVEVGPSITLASLSEVLAFAVGSFI-PMP 280
R + P+ S+ A+ G I + L E+ A A+G+ + P
Sbjct: 314 LRGGWQRPVPNGASSDDSRQSQLIPNIIQLAVDREGWYIVRSYLLEIGALALGAVLRPND 373
Query: 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 340
+ F AA +L+D +L T + ++ C+KL + S G+G
Sbjct: 374 SLGHFCFLAAWTLLIDAILLFTFYATIL----------------CVKLEITRIRSPGGLG 417
Query: 341 Q---RKP-GLLARYMKEVHATILSLWGVKIAVISLFVAFT----------LASIAL-CTR 385
Q + P G+ +K + T L V V+ F+ + +A+ L T
Sbjct: 418 QVNAKHPSGIFGHKVKSTNITWWKLLTVGGFVLCHFLQLSPFFYRVMGEYMANGTLPPTA 477
Query: 386 IEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN--YNYSSESRQT 435
+ P E L + YL + + PPL + +++ +N S+ R T
Sbjct: 478 VSPFKEAANGL-NEIYLTARVEGFETRVTVLPPLQYALESAGFNISATKRST 528
>sp|Q6R5J1|DISP2_DANRE Protein dispatched homolog 2 OS=Danio rerio GN=disp2 PE=2 SV=1
Length = 1476
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 675 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTM 733
V +G++ +L+ QLN V + + A G++V+F + ++S++ D+ R+ ++ M
Sbjct: 1033 VFATVGLLVLLEWQLNGVEALFISAAAGLSVDFVANYCISYSLAPHSDRLGRVAHSIKRM 1092
Query: 734 GASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 793
G V +G VG+I+L + + F + + V GF F + FGP
Sbjct: 1093 GCPVATGAGAYFCVGIIMLPATALLFRKLGIFLLLVKCVACGF--ATFFFQSLCCFFGPQ 1150
Query: 794 SRC 796
+ C
Sbjct: 1151 NNC 1153
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 204
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 205 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 260
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 261 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,311,106
Number of Sequences: 539616
Number of extensions: 10979822
Number of successful extensions: 37207
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 36917
Number of HSP's gapped (non-prelim): 210
length of query: 811
length of database: 191,569,459
effective HSP length: 126
effective length of query: 685
effective length of database: 123,577,843
effective search space: 84650822455
effective search space used: 84650822455
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)