Query 003551
Match_columns 811
No_of_seqs 363 out of 2799
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 01:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 7E-117 2E-121 1079.5 73.5 760 1-791 421-1204(1204)
2 TIGR00918 2A060602 The Eukaryo 100.0 9E-107 2E-111 968.2 67.2 775 1-808 156-1135(1145)
3 KOG1933 Cholesterol transport 100.0 2E-101 5E-106 901.6 18.3 765 1-798 400-1182(1201)
4 PF02460 Patched: Patched fami 100.0 5.1E-94 1.1E-98 867.6 61.7 698 1-790 85-797 (798)
5 KOG1934 Predicted membrane pro 100.0 4.6E-91 9.9E-96 812.3 57.5 695 2-794 125-834 (868)
6 KOG1935 Membrane protein Patch 100.0 7.2E-70 1.6E-74 595.3 39.2 701 65-800 314-1080(1143)
7 COG1033 Predicted exporters of 100.0 8.5E-53 1.8E-57 481.4 51.9 550 122-794 172-725 (727)
8 TIGR00921 2A067 The (Largely A 100.0 2.6E-47 5.6E-52 459.5 58.1 546 122-789 169-719 (719)
9 TIGR00833 actII Transport prot 100.0 2.7E-41 5.9E-46 411.1 57.7 581 122-796 149-909 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 8.7E-38 1.9E-42 380.7 48.1 577 123-787 246-856 (862)
11 PRK10614 multidrug efflux syst 100.0 2.3E-32 4.9E-37 336.8 50.0 615 123-791 312-1009(1025)
12 TIGR00915 2A0602 The (Largely 100.0 4E-32 8.6E-37 334.7 51.1 624 123-807 318-1041(1044)
13 PRK10503 multidrug efflux syst 100.0 3.9E-32 8.6E-37 334.1 49.7 610 123-791 321-1023(1040)
14 PRK09579 multidrug efflux prot 100.0 8.3E-32 1.8E-36 330.6 49.3 604 123-798 311-1010(1017)
15 PF00873 ACR_tran: AcrB/AcrD/A 100.0 1E-32 2.2E-37 342.7 40.9 604 123-790 311-1020(1021)
16 COG0841 AcrB Cation/multidrug 100.0 1.5E-32 3.3E-37 330.0 39.4 629 103-791 291-1007(1009)
17 PRK09577 multidrug efflux prot 100.0 4.5E-31 9.8E-36 325.0 48.8 615 123-795 317-1027(1032)
18 TIGR00914 2A0601 heavy metal e 100.0 1.1E-31 2.4E-36 332.3 43.7 599 123-794 321-1039(1051)
19 PRK10555 aminoglycoside/multid 100.0 1.6E-30 3.5E-35 320.3 51.1 615 123-792 318-1028(1037)
20 PRK15127 multidrug efflux syst 100.0 4.7E-30 1E-34 316.1 46.9 598 123-792 318-1031(1049)
21 PF12349 Sterol-sensing: Stero 100.0 2.8E-29 6.2E-34 239.9 15.1 152 176-327 1-152 (153)
22 PRK13024 bifunctional preprote 100.0 1.4E-24 3E-29 256.4 46.7 454 149-794 270-736 (755)
23 COG3696 Putative silver efflux 100.0 2E-25 4.2E-30 252.1 36.6 610 123-794 314-1022(1027)
24 TIGR00921 2A067 The (Largely A 100.0 3.3E-26 7.2E-31 276.2 32.1 342 366-794 5-351 (719)
25 TIGR00920 2A060605 3-hydroxy-3 99.9 2.3E-27 4.9E-32 269.7 14.8 169 145-320 59-228 (886)
26 PRK14726 bifunctional preprote 99.9 4.4E-23 9.4E-28 242.1 45.3 447 150-795 377-832 (855)
27 COG1033 Predicted exporters of 99.9 2.4E-24 5.2E-29 247.7 30.0 339 358-791 8-351 (727)
28 PRK13023 bifunctional preprote 99.9 3.3E-20 7.2E-25 215.5 46.7 466 129-792 261-735 (758)
29 PF03176 MMPL: MMPL family; I 99.9 2.2E-21 4.9E-26 212.4 26.3 200 593-794 99-306 (333)
30 COG2409 Predicted drug exporte 99.9 6.5E-19 1.4E-23 214.5 39.5 627 122-797 160-923 (937)
31 TIGR03480 HpnN hopanoid biosyn 99.9 1.4E-19 3.1E-24 221.2 31.7 194 598-793 228-426 (862)
32 PRK12911 bifunctional preprote 99.8 3.6E-17 7.7E-22 192.9 45.3 151 150-315 914-1065(1403)
33 TIGR00833 actII Transport prot 99.8 1.6E-18 3.5E-23 211.9 32.7 198 595-794 131-336 (910)
34 PF03176 MMPL: MMPL family; I 99.8 1.2E-19 2.7E-24 198.6 20.5 217 78-315 84-306 (333)
35 COG4258 Predicted exporter [Ge 99.7 3.6E-14 7.9E-19 153.7 37.0 251 125-425 235-490 (788)
36 PRK09579 multidrug efflux prot 99.7 4.8E-16 1E-20 191.8 23.2 190 596-792 291-490 (1017)
37 PRK10614 multidrug efflux syst 99.7 1.1E-15 2.3E-20 189.4 23.2 158 633-792 328-491 (1025)
38 PRK09577 multidrug efflux prot 99.7 1.6E-15 3.5E-20 187.8 22.4 157 634-792 334-497 (1032)
39 PRK13022 secF preprotein trans 99.7 4.6E-15 1E-19 156.8 22.3 158 633-793 123-285 (289)
40 PRK10555 aminoglycoside/multid 99.7 2.3E-15 4.9E-20 186.5 23.2 159 633-793 334-499 (1037)
41 TIGR00915 2A0602 The (Largely 99.7 2.2E-15 4.9E-20 186.7 22.9 158 633-792 334-498 (1044)
42 PRK15127 multidrug efflux syst 99.7 2.7E-15 5.8E-20 185.8 22.9 158 633-792 334-498 (1049)
43 COG0841 AcrB Cation/multidrug 99.7 1.2E-15 2.6E-20 184.6 19.2 161 632-795 324-490 (1009)
44 TIGR00916 2A0604s01 protein-ex 99.7 2.2E-15 4.9E-20 149.9 17.3 128 634-763 44-176 (192)
45 PRK10503 multidrug efflux syst 99.7 4.1E-15 8.8E-20 184.1 22.3 159 632-792 336-500 (1040)
46 PF00873 ACR_tran: AcrB/AcrD/A 99.6 8E-15 1.7E-19 183.1 21.9 192 596-794 291-493 (1021)
47 TIGR00917 2A060601 Niemann-Pic 99.6 2.7E-13 5.8E-18 168.2 33.9 150 642-793 574-749 (1204)
48 TIGR00966 3a0501s07 protein-ex 99.6 3.7E-14 8.1E-19 147.1 19.6 147 633-782 94-245 (246)
49 TIGR00914 2A0601 heavy metal e 99.6 5E-14 1.1E-18 175.5 23.1 187 597-792 302-508 (1051)
50 PRK13024 bifunctional preprote 99.6 1.4E-13 3.1E-18 163.3 22.7 159 632-794 261-422 (755)
51 PRK13022 secF preprotein trans 99.6 9.8E-14 2.1E-18 146.7 17.6 165 134-315 119-286 (289)
52 PRK08578 preprotein translocas 99.6 3.3E-13 7.2E-18 142.8 21.1 157 633-795 130-290 (292)
53 TIGR01129 secD protein-export 99.5 5E-13 1.1E-17 147.2 20.2 151 633-787 244-397 (397)
54 TIGR00916 2A0604s01 protein-ex 99.5 1.1E-13 2.5E-18 137.7 13.6 137 150-300 52-191 (192)
55 PRK05812 secD preprotein trans 99.5 6.8E-13 1.5E-17 149.3 20.7 153 634-790 330-485 (498)
56 PRK13023 bifunctional preprote 99.5 2.4E-12 5.1E-17 150.5 21.5 156 634-793 275-433 (758)
57 PRK14726 bifunctional preprote 99.5 4.3E-12 9.2E-17 150.1 22.7 159 632-794 367-528 (855)
58 PRK13021 secF preprotein trans 99.5 3.7E-12 8.1E-17 134.0 19.8 158 633-793 122-284 (297)
59 TIGR00966 3a0501s07 protein-ex 99.4 4.7E-12 1E-16 131.4 18.0 142 148-303 101-245 (246)
60 PRK05812 secD preprotein trans 99.4 4.7E-12 1E-16 142.5 17.8 151 149-314 337-488 (498)
61 TIGR01129 secD protein-export 99.4 1.2E-11 2.6E-16 136.4 16.3 145 148-307 251-396 (397)
62 TIGR00918 2A060602 The Eukaryo 99.3 3.1E-11 6.6E-16 147.0 20.5 178 124-316 943-1122(1145)
63 PRK12911 bifunctional preprote 99.3 6.1E-11 1.3E-15 141.1 21.3 149 640-794 912-1065(1403)
64 PF02355 SecD_SecF: Protein ex 99.3 1.2E-10 2.6E-15 115.2 20.1 160 629-791 23-187 (189)
65 PRK12933 secD preprotein trans 99.3 4E-11 8.7E-16 135.4 18.8 156 636-793 435-596 (604)
66 PRK08578 preprotein translocas 99.3 7.7E-11 1.7E-15 124.9 19.7 148 149-315 138-289 (292)
67 PRK12933 secD preprotein trans 99.3 2.9E-11 6.2E-16 136.6 16.6 151 150-315 445-597 (604)
68 PRK08343 secD preprotein trans 99.2 5.8E-10 1.3E-14 123.2 19.4 177 601-787 224-406 (417)
69 PF02355 SecD_SecF: Protein ex 99.2 9.2E-10 2E-14 108.9 17.7 152 148-313 34-188 (189)
70 PRK13021 secF preprotein trans 99.2 1E-09 2.2E-14 115.7 19.0 163 133-312 117-282 (297)
71 COG2409 Predicted drug exporte 99.2 3.6E-09 7.7E-14 129.8 26.3 197 599-797 146-350 (937)
72 PF02460 Patched: Patched fami 99.2 1.3E-09 2.8E-14 133.1 21.5 163 135-311 635-797 (798)
73 COG3696 Putative silver efflux 99.1 1.7E-09 3.6E-14 124.3 16.4 157 634-792 331-497 (1027)
74 KOG1934 Predicted membrane pro 99.1 4.8E-08 1E-12 116.3 29.3 134 660-795 282-417 (868)
75 PF12349 Sterol-sensing: Stero 99.0 1.4E-08 3E-13 97.4 15.7 129 660-791 5-137 (153)
76 COG0341 SecF Preprotein transl 98.9 8.1E-08 1.8E-12 101.1 20.3 170 133-319 125-297 (305)
77 COG0341 SecF Preprotein transl 98.8 1.1E-07 2.5E-12 100.0 16.6 162 634-798 131-297 (305)
78 PRK08343 secD preprotein trans 98.8 1.1E-07 2.3E-12 105.4 16.9 165 124-304 241-406 (417)
79 KOG3664 Predicted patched tran 98.8 6.3E-09 1.4E-13 121.3 7.0 181 123-315 303-503 (999)
80 COG0342 SecD Preprotein transl 98.8 1.2E-07 2.7E-12 107.0 16.4 151 150-315 348-499 (506)
81 COG0342 SecD Preprotein transl 98.7 5.2E-07 1.1E-11 102.0 19.4 157 635-795 341-500 (506)
82 COG4258 Predicted exporter [Ge 98.5 3.8E-06 8.2E-11 92.5 18.6 146 635-788 254-403 (788)
83 KOG1935 Membrane protein Patch 98.4 3.4E-06 7.3E-11 95.8 13.8 119 669-790 449-568 (1143)
84 TIGR00920 2A060605 3-hydroxy-3 97.8 0.00019 4.1E-09 84.0 14.2 129 661-792 90-221 (886)
85 KOG1933 Cholesterol transport 87.4 0.23 5E-06 61.4 1.1 129 184-315 1047-1178(1201)
86 PF08006 DUF1700: Protein of u 68.3 26 0.00056 34.5 8.5 18 538-555 3-20 (181)
87 KOG3664 Predicted patched tran 66.5 1.6 3.4E-05 52.9 -0.7 134 656-792 344-501 (999)
88 TIGR00400 mgtE Mg2+ transporte 44.5 5E+02 0.011 29.6 14.9 71 724-795 350-420 (449)
89 PF09946 DUF2178: Predicted me 40.2 1.7E+02 0.0037 26.3 8.1 21 277-297 88-108 (111)
90 PF01914 MarC: MarC family int 35.6 1.8E+02 0.0038 29.3 8.3 27 680-706 60-86 (203)
91 PRK10352 nickel transporter pe 31.0 6.3E+02 0.014 27.3 12.2 49 214-262 175-236 (314)
92 COG0601 DppB ABC-type dipeptid 29.0 7.2E+02 0.016 26.9 12.2 77 213-290 181-276 (317)
93 PRK15081 glutathione ABC trans 28.3 7.7E+02 0.017 26.5 12.7 49 214-262 172-233 (306)
94 PRK02935 hypothetical protein; 25.6 2.1E+02 0.0045 25.3 5.7 30 181-210 37-66 (110)
95 PRK11111 hypothetical protein; 24.6 3.2E+02 0.0069 27.8 8.0 27 681-707 67-93 (214)
96 PRK09471 oppB oligopeptide tra 23.4 7.7E+02 0.017 26.4 11.3 28 241-269 212-240 (306)
97 PF11023 DUF2614: Protein of u 21.9 2E+02 0.0044 25.8 5.0 30 181-210 36-65 (114)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=7.2e-117 Score=1079.51 Aligned_cols=760 Identities=59% Similarity=0.972 Sum_probs=673.9
Q ss_pred CCCccccccccCC-CCCccccHhhhhcCCCCCCCCc--------cccccccccccccCCCccccccCCCCCCCCcccCCC
Q 003551 1 MISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDDF--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGF 71 (811)
Q Consensus 1 ~~~~~d~C~~~~~-~~C~~~s~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lgg~ 71 (811)
.++++|+|+||.+ +.|.++|+++||+++.++++.. .+.++..+|...+ .+|++.+|+|++++.++||+
T Consensus 421 ~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~ 497 (1204)
T TIGR00917 421 LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGF 497 (1204)
T ss_pred CCChhccccccCCCCCCccCCHHHHhccChhhcCcccccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCc
Confidence 3689999999984 6899999999999987666421 2445666775432 46999999999999999999
Q ss_pred CCCccccceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHH
Q 003551 72 SGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI 151 (811)
Q Consensus 72 ~~~~~~~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~ 151 (811)
+++++.+|+|+++||.++|+.++ ++..+.+.+||++|.+.++++..+. ...+++++|.+++++++|+++.+..|++.+
T Consensus 498 ~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~ 575 (1204)
T TIGR00917 498 SGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWEKAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITI 575 (1204)
T ss_pred CCCCcccceEEEEEEEEecCCCC-chhhhHHHHHHHHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHH
Confidence 98899999999999999976433 2335789999999999998864321 123589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceeh
Q 003551 152 VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCI 231 (811)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~ 231 (811)
+++|++|++|+++.+++++..++++++||+++|++|++++++|+++++|+++++|+++++++++++|||++||||||+|+
T Consensus 576 ~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifi 655 (1204)
T TIGR00917 576 LVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFI 655 (1204)
T ss_pred HHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999998776666789999999999999999999999999999999999877899999999999999999
Q ss_pred HHHHHHHhcc--CC---------CHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003551 232 LVHAVKRQQL--EL---------PLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 300 (811)
Q Consensus 232 l~~~~~~~~~--~~---------~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~ 300 (811)
++++|++..+ +. ++++|++++++++|+||++|++|++++|++++++++|++|.||+++++||+++|+++
T Consensus 656 lv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~ 735 (1204)
T TIGR00917 656 LVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQ 735 (1204)
T ss_pred HHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999987432 22 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHH
Q 003551 301 ITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASI 380 (811)
Q Consensus 301 ~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si 380 (811)
+|+|||+|+++.||++.+|+||+||.+.++.....++...+.+.+.+.+|++++|+|+++++++|++++++|++++++|+
T Consensus 736 it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si 815 (1204)
T TIGR00917 736 ITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGI 815 (1204)
T ss_pred HHHHHHHHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHH
Confidence 99999999999999999999999999876432111111123455789999999999999999999999999999999999
Q ss_pred hhhhccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEe-cCCCChhhhhhhhhhcccccCccchHHHHHHhccC
Q 003551 381 ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLI 459 (811)
Q Consensus 381 ~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~-~~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~ 459 (811)
||+++++.|+|+++++|+|||+.+|++.++++++.|+|+|+|++ +.||++++. |+++|+..+|+++++.++++
T Consensus 816 ~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~~~-q~~lc~~~~c~~~sl~~~~~----- 889 (1204)
T TIGR00917 816 ALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSES-QNKVCTGGGCNKDSIVNVFN----- 889 (1204)
T ss_pred HHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCHHH-HHHHhcccCCcHHHHHHhhc-----
Confidence 99999999999999999999999999999999999999999998 689988754 56899999999999998655
Q ss_pred CCCccccCCCcccHHHHHhhhCcCccccccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCCh
Q 003551 460 PQSSYIAKPAASWLDDFLVWISPEAFGCCRK-FTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPST 538 (811)
Q Consensus 460 ~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 538 (811)
+.+++.+++.+|+|||.+|+++. ..||+. ..++.+|++.+ ++|..|++...-...+|+.
T Consensus 890 -~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~ 949 (1204)
T TIGR00917 890 -NLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPST 949 (1204)
T ss_pred -ccchhcCCchHHHHHHHHHhCcc-ccceeecCCCCCcCCCcc------------------ccccccccccccccCCCCH
Confidence 44677888999999999999986 467763 34566665332 3566666422223458888
Q ss_pred hhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcc
Q 003551 539 IQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQME 618 (811)
Q Consensus 539 ~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (811)
++|+++|++|++..|+..|++||++.|..+++++..+++.|.++||+++|+++++++|++++++++|++++++++..+++
T Consensus 950 ~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~ 1029 (1204)
T TIGR00917 950 TQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKME 1029 (1204)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999998999999999999999888764445679999999999999999999999999999999987666789
Q ss_pred cccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 003551 619 IFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNL 697 (811)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~-~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~ 697 (811)
++||+..|+|+|||.++++++++++++++++|++++++++ .+++.++++.+++++++++++|+|++||++||++|++++
T Consensus 1030 vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~L 1109 (1204)
T TIGR00917 1030 VFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNL 1109 (1204)
T ss_pred cccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHH
Confidence 9999999999999999999999999999999999999998 588999999999999999999999999999999999999
Q ss_pred HHhhhhcccchhhhhHHhhcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHH
Q 003551 698 VMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGF 776 (811)
Q Consensus 698 ~~~iGi~Vd~~ihi~~~f~~~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~ 776 (811)
+|++|++|||+.|+.|+|... .+++++|+.+|++++|+||+.|+++|+++|++||+|+++++|++|||+|+++++++|+
T Consensus 1110 i~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~ 1189 (1204)
T TIGR00917 1110 VMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGA 1189 (1204)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4589999999999999999999778999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhC
Q 003551 777 LHGLVFLPVVLSVFG 791 (811)
Q Consensus 777 ~~~L~llPvll~~~~ 791 (811)
+|||++|||+|+++|
T Consensus 1190 ~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917 1190 LHGLVFLPVLLSYIG 1204 (1204)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999987
No 2
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=8.7e-107 Score=968.16 Aligned_cols=775 Identities=28% Similarity=0.454 Sum_probs=620.6
Q ss_pred CCCccccccccC-------------C--CCCcc-------------ccHhhhhcCCCC----CCCCcc------------
Q 003551 1 MISLTDICMKPL-------------G--QDCAT-------------QSVLQYFKMDPK----NFDDFG------------ 36 (811)
Q Consensus 1 ~~~~~d~C~~~~-------------~--~~C~~-------------~s~~~~~~~~~~----~~~~~~------------ 36 (811)
+++++|+|+||. + ..|.+ +|+.+|++++.+ +++...
T Consensus 156 ~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpldcfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 235 (1145)
T TIGR00918 156 QWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLDCFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQV 235 (1145)
T ss_pred ccchhhhccCCCCcccccchhhhcccCCCCcEEecccchhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccch
Confidence 378999999997 2 35999 888888887766 454321
Q ss_pred --ccccccc-----------cccccCCCcccccc-----CCCCC--------------------CCCcccCCCC---CCc
Q 003551 37 --GVEHVKY-----------CFQHYTSTESCMSA-----FKGPL--------------------DPSTALGGFS---GNN 75 (811)
Q Consensus 37 --~~~~~~~-----------~~~~~~~~~~~~~~-----~~~p~--------------------~~~~~lgg~~---~~~ 75 (811)
|.++++. |.+.+. ..|+++ +|+|+ ++++++||++ +++
T Consensus 236 ~~~~~~~~~a~i~~~y~~~pC~~~~d--~~C~~~apn~~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~ 313 (1145)
T TIGR00918 236 ESWEEMLKKAAVGQGYMERPCLNPAD--PDCPDTAPNKNSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGK 313 (1145)
T ss_pred HHHHHHHHHhcccccccCCCcCCCCC--CCCCCcccccccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCC
Confidence 5556666 976432 469998 89999 9999999987 568
Q ss_pred cccceEEEEEEEecc---------------CCCcCcc-chHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHH
Q 003551 76 YSEASAFVVTYPVNN---------------AVDREGN-ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEE 139 (811)
Q Consensus 76 ~~~A~a~~l~~~l~~---------------~~~~~~~-~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 139 (811)
+.+|+|++++|.++| +.+...+ ..+.+++||++|.+.+++... ...+..+++.+++|+++|
T Consensus 314 i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~a~~va~~We~~F~~~v~~~~~---~~~~~~~~~fss~SL~de 390 (1145)
T TIGR00918 314 LLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEKAAAVLEAWQRNFSEEVQQSLP---KNSSQKILVFSSTTLDDI 390 (1145)
T ss_pred EeeeeeEEEEEEecChHHHHHHhhccccccccCcchhHHHHHHHHHHHHHHHHHHHhcc---cccCCceEEEecccHHHH
Confidence 999999999999987 2211111 124489999999999997542 223445655666999999
Q ss_pred HhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhh
Q 003551 140 LKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPF 219 (811)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pf 219 (811)
+++.++.++..++++|++|++|+++.++++ ++++||++||++|++++++|+++++|++.++|+++|.+...++||
T Consensus 391 l~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPF 465 (1145)
T TIGR00918 391 LKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPF 465 (1145)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhH
Confidence 999999999999999999999999998876 579999999999999999999999999999999999977799999
Q ss_pred hhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH
Q 003551 220 LVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLL 299 (811)
Q Consensus 220 l~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~ 299 (811)
|+|||||||+|+++++|+++++..++++|++++++++|+||++|++|++++|++|+++++|++|.||++++++++++|++
T Consensus 466 LvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~ 545 (1145)
T TIGR00918 466 LALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAA 545 (1145)
T ss_pred HHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCcceeeccccCC----------CccC-----------------------------------
Q 003551 300 QITAFVALIVFDFLRAEDKRVDCIPCLKLSS----------SYAD----------------------------------- 334 (811)
Q Consensus 300 ~~t~~pall~l~~~r~~~~r~~~~~~~~~~~----------~~~~----------------------------------- 334 (811)
|+|+|||+|++|.||++.+|+|++||.+.+. +..+
T Consensus 546 qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1145)
T TIGR00918 546 VLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQIEPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPR 625 (1145)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeecccccccccccCccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999976510 0000
Q ss_pred -------CCCC-------CCC-------------------CCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHh
Q 003551 335 -------SDKG-------IGQ-------------------RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIA 381 (811)
Q Consensus 335 -------~~~~-------~~~-------------------~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~ 381 (811)
.++. .+. ..+..+.+|++++|+|+|+++++|++|+++|++++++|+|
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~ 705 (1145)
T TIGR00918 626 SHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLY 705 (1145)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHH
Confidence 0000 000 0114578899999999999999999999999999999999
Q ss_pred hhhccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEec-CCCChhhhhhhhhhcccccCccchHHHHHHhccCC
Q 003551 382 LCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 460 (811)
Q Consensus 382 ~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~-~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~ 460 (811)
|+++++.|+|+++++|+|||+.+|++.+++||+. +|+|+|+++ .||.+.+ +++ .++.+ .++
T Consensus 706 g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~vy~V~~~~~dy~~~q---~~l--------~~l~~------~f~ 767 (1145)
T TIGR00918 706 GTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNMYAVTQGNFDYPTQQ---QLL--------YDLHQ------SFS 767 (1145)
T ss_pred hhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-CceEEEeCCCCCchHHH---HHH--------HHHHH------Hhc
Confidence 9999999999999999999999999999999998 689988884 7885432 222 12222 244
Q ss_pred CCccccCC-----CcccHHHHHhhhCcC-c--ccccccC--CCCCCCCCCCCC-CCCCC-CCCCCCCCCccCCCCccccc
Q 003551 461 QSSYIAKP-----AASWLDDFLVWISPE-A--FGCCRKF--TNGSYCPPDDQP-PCCPS-GQSSCGSAGVCKDCTTCFHH 528 (811)
Q Consensus 461 ~~~~i~~~-----~~~wl~d~~~~l~~~-~--~~~~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 528 (811)
+.+++.++ ..+|++||.+|+++. . ..||+.. ..+.+|++++.. .|... .+........++++ ...
T Consensus 768 ~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~g~~~~~~~~n~s~~~~~~~~l~~qtg~~~~p~~~~~---~~~ 844 (1145)
T TIGR00918 768 SVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRDGRITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQ---LTT 844 (1145)
T ss_pred cCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhhcccccccccCCccccchhhhhcccccccCCcccccc---ccc
Confidence 55666654 469999999999862 1 3566631 333444433211 00000 00000000000111 001
Q ss_pred CC--CCCCCCChhhHHhhhHHHHccCCCcccc-cCC----CCCcccc-cccCCC-----CCCeEEEEEEEeeccCCCChh
Q 003551 529 SD--LLKDRPSTIQFKEKLPWFLNALPSASCA-KGG----HGAYTNS-VDLKGY-----ENGIVQASSFRTYHTPLNRQI 595 (811)
Q Consensus 529 ~~--~~~~~p~~~~f~~~l~~~l~~~p~~~~~-~gg----~~~y~~~-v~~~~~-----~~~~i~~sr~~~~~~~~~~~~ 595 (811)
.. -.+++|+++.|+++|+.|+++.|..... .+. ...|..+ .+.+.. ..+.+..++|+++|+++++++
T Consensus 845 ~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~ 924 (1145)
T TIGR00918 845 QRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETS 924 (1145)
T ss_pred cccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcchhcccccccccccccccccccchhheeeEEEcCCCCHH
Confidence 01 1256889999999999999865431000 000 0111111 111100 112334458999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 003551 596 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 675 (811)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~ 675 (811)
|++++++++|+++++++ ..++++|++|..|+++|||..+...++.++++++++|++++++++++++.++++++++.+++
T Consensus 925 d~i~al~~~R~Ia~~~~-~~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~ 1003 (1145)
T TIGR00918 925 QFVEAIEHVRAICNNYE-GFGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMT 1003 (1145)
T ss_pred HHHHHHHHHHHHHHhhh-hcCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 99999999999999986 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 003551 676 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFS 755 (811)
Q Consensus 676 ~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs 755 (811)
++++|+|++||++||++|+++++|++|++|||++|++|+|..+.+++++|+++|+.++|.||++|+ +||++|+++|+|+
T Consensus 1004 v~v~G~M~lwgI~LnaVS~vnLimsIGisVefsaHI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~-lTT~lGvlvLafs 1082 (1145)
T TIGR00918 1004 VELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAIGDRNRRAVLALEHMFAPVLDGA-LSTLLGVLMLAGS 1082 (1145)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998888899999999999999999998 7999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccchhhcccCCCC
Q 003551 756 RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSV 808 (811)
Q Consensus 756 ~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~~~~~~~~~~~~~ 808 (811)
++.++..+||+++++++++|++|||++||++|+++||+++..+.+...+-+.+
T Consensus 1083 ~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp~~~~~p~~~~~~~~~p 1135 (1145)
T TIGR00918 1083 EFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEPEVSPAEGRSRLPTP 1135 (1145)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCCC
Confidence 98877777799999999999999999999999999999888776655544444
No 3
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-101 Score=901.65 Aligned_cols=765 Identities=53% Similarity=0.881 Sum_probs=699.1
Q ss_pred CCCccccccccCCC--CCccccHhhhhcCCCCCCCC--------ccccccccccccccCCCccccccCCCCCCCCcccCC
Q 003551 1 MISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFDD--------FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGG 70 (811)
Q Consensus 1 ~~~~~d~C~~~~~~--~C~~~s~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lgg 70 (811)
+++++|+|++|++. +|.++|++|||+++.+.++. +.|.+++.+|.+.|. +|+++||+|+.|..++||
T Consensus 400 ~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~~~~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg 476 (1201)
T KOG1933|consen 400 NISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKLNDSFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGG 476 (1201)
T ss_pred ccchheeeeeeccCCcchhhhhhHhhhccChhhhhccccccchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcC
Confidence 46899999999863 68999999999998876531 247889999988765 699999999999999999
Q ss_pred CCCCccccceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeE-EEEeccccHHHHHhhhcccchH
Q 003551 71 FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAI 149 (811)
Q Consensus 71 ~~~~~~~~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~-v~~~~~~s~~~~~~~~~~~d~~ 149 (811)
++++++..|+++++||+++|+.++... .+.+..||++|.+.++++..+ .+. +.|.+++|+++|+++.+..|..
T Consensus 477 ~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~f~~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~ 550 (1201)
T KOG1933|consen 477 FSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKAFVNFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVI 550 (1201)
T ss_pred CCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHHHHHHHHHHhhh-----ccchheeeccCccchhhccCCcCCce
Confidence 998778999999999999998765322 478899999999999998653 223 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccce
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 229 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~ 229 (811)
++.++|.+|++|+.+++++.+..++..++||+.+++.|+..+..++..++|+..++|++.+.+..+++||+++++|+|++
T Consensus 551 t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdni 630 (1201)
T KOG1933|consen 551 TVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNI 630 (1201)
T ss_pred EEEeehHHHHHHHHHHhccCcccceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccE
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred ehHHHHHHHhccC--CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 230 CILVHAVKRQQLE--LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 307 (811)
Q Consensus 230 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pal 307 (811)
++++++|+|..+. .+.++++..++.++||+|+.+++....+|++++++++|++|.|++++++++++++++|+|.|.++
T Consensus 631 filv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l 710 (1201)
T KOG1933|consen 631 FILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVAL 710 (1201)
T ss_pred EEEEeeecccccccCCCcccccchhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999985543 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhhhccC
Q 003551 308 IVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIE 387 (811)
Q Consensus 308 l~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~ 387 (811)
+++|.||++.+|.|++||.|..++. .. +...+.+.+|++.+|+|+++++++|++++++|.+++.+++++..+++
T Consensus 711 ~~~D~kR~~~~r~d~~~~~~~~~~~-----~~-~~~~~~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid 784 (1201)
T KOG1933|consen 711 IVLDAKRRLDNRIDIFCCVKPSEEE-----SV-RGNEGLLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRID 784 (1201)
T ss_pred ccccchhhhcCCcceEecccccccc-----cc-cccchhHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhccccccc
Confidence 9999999999999999999876541 11 22337889999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEec-CCCChhhhhhhhhhcccccCccchHHHHHHhccCCCCcccc
Q 003551 388 PGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIA 466 (811)
Q Consensus 388 ~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~-~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~ 466 (811)
.|+|++..+|+|||+.+|++.+.++++.|||+|+|+++ .+++++.. ||.+|++.+|+++++.+++..+.+.++.++++
T Consensus 785 ~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~~~~~s~~~~-Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s 863 (1201)
T KOG1933|consen 785 FGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKGGLDLSSPKD-QNLICSIAGCNDNSLRNQIASAAEAPEQTYIS 863 (1201)
T ss_pred ccccceEeecccchhhhHhhhhhhhcccCCCEEEEecCCCCCCChhc-ccceecccccCCcchhhhhhhcccCCcceeec
Confidence 99999999999999999999999999999999999996 77887755 59999999999999999999999999999999
Q ss_pred CCCcccHHHHHhhhCcCcccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhh
Q 003551 467 KPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKL 545 (811)
Q Consensus 467 ~~~~~wl~d~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l 545 (811)
++..+|+|||.+|++++.+ ||| +..++.+||++.+. ..|..|.........+|+.++|+++|
T Consensus 864 ~~~~~W~ddyl~w~~~~~~-cCr~~~~~g~fc~~~~~~----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L 926 (1201)
T KOG1933|consen 864 RPASSWLDDYLVWLSPQSS-CCRLKPDPGQFCPPSLND----------------ERCSPCRITSNSLSNRPSIEQFYKYL 926 (1201)
T ss_pred cccccccchhheeecccCC-ccccCCCCCCcCCCCccc----------------ccCCccccCCcccccCccHHHHhhhc
Confidence 9999999999999999765 999 67778899887543 45666765555556689999999999
Q ss_pred HHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhc-Ccccccccc
Q 003551 546 PWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSV 624 (811)
Q Consensus 546 ~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 624 (811)
++|+++.|+..|.+||++.|..++++.....+.|++++|+++|+++.++.|+++++++.|+++.++.+.. +.+++||+.
T Consensus 927 ~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~ 1006 (1201)
T KOG1933|consen 927 PWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSV 1006 (1201)
T ss_pred hhhccCCCCcccCCCCceeeecceEEEecCcccchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeee
Confidence 9999999999999999999999999876666679999999999999999999999999999998876422 578999999
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhh
Q 003551 625 FYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGI 703 (811)
Q Consensus 625 ~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~-~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi 703 (811)
+|.++|||.+++..+...+.++++.+|++..+++ .+++.+++..+++.++++.+.|+|++|||++|.+|++|++|++|+
T Consensus 1007 fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~~~ss~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi 1086 (1201)
T KOG1933|consen 1007 FYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLDVDSSLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGI 1086 (1201)
T ss_pred ehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccccccceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcch
Confidence 9999999999999999999999999999998866 678888888888999999999999999999999999999999999
Q ss_pred cccchhhhhHHhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 704 AVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVF 782 (811)
Q Consensus 704 ~Vd~~ihi~~~f~~~~~-~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~l 782 (811)
+|||+.|+.|.|....+ ++.+|+.+++..+|..++.+.++|.+.|.++|.|++++++.+|||+|+++.++++++||+++
T Consensus 1087 ~vef~~hi~~sf~~s~~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hGlif 1166 (1201)
T KOG1933|consen 1087 AVEFCVHITHSFATSSGPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHGLIF 1166 (1201)
T ss_pred hhhHHHHhhcceeeccCCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeehHHHHHHHHHheeeeee
Confidence 99999999999998776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcccc
Q 003551 783 LPVVLSVFGPPSRCML 798 (811)
Q Consensus 783 lPvll~~~~p~~~~~~ 798 (811)
+|++|+++||..+...
T Consensus 1167 lpvlls~~g~~~~~~~ 1182 (1201)
T KOG1933|consen 1167 LPVLLSLLGPESSRAD 1182 (1201)
T ss_pred hhhHHHhcCCccccch
Confidence 9999999998766554
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=5.1e-94 Score=867.60 Aligned_cols=698 Identities=36% Similarity=0.620 Sum_probs=588.4
Q ss_pred CCCccccccccCCCCCccccHhhhhcCCCCCCCCccccccccccccccCCCccccccCCCCCCCCcccCCCC----CCcc
Q 003551 1 MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNY 76 (811)
Q Consensus 1 ~~~~~d~C~~~~~~~C~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lgg~~----~~~~ 76 (811)
+++|+|+|.++-+..|..++.++++..+... + ...+++||. ...+|.|++.+..+||++ ++.+
T Consensus 85 ~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ltyP~---------~~~~~~~~~l~~~~ggv~~~~~~~~i 151 (798)
T PF02460_consen 85 TITYKDLCAKYCDLNCPVNSFLNFELESNRS-N---DNINLTYPI---------MNIFGQPIFLGPNFGGVTTDPDNGNI 151 (798)
T ss_pred eeeccccCCCccCCCcchhHHHHHHHHhhcc-C---CceeecCCc---------cCCCCcccccCceecCccccCCcchh
Confidence 3689999999867899999998863221110 1 122345542 234588999999999985 3568
Q ss_pred ccceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHHHHHHH
Q 003551 77 SEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 156 (811)
Q Consensus 77 ~~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~ 156 (811)
.+|++++++|.++... .+.++.+++||+++.+.+++.. .++++++++.+++++++|+++.+..+.+.+.++++
T Consensus 152 ~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~~~~~~~~~~~~~ 224 (798)
T PF02460_consen 152 ESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNSQTLVPLFAIGFA 224 (798)
T ss_pred heeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999998432 2356778999999999988763 23479999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceehHHHHH
Q 003551 157 VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV 236 (811)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~ 236 (811)
+|++|+.+...+.+....+|+|||+++|++|++++++|+++++|++.++|+++++ +..++|||++||||||+|+++++|
T Consensus 225 ~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIGvDd~Fi~~~~~ 303 (798)
T PF02460_consen 225 LMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIGVDDMFIMIHAW 303 (798)
T ss_pred HHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHHHhceEEeHHHH
Confidence 9999988876655445567899999999999999999999999999999999998 578999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003551 237 KRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 316 (811)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~ 316 (811)
++++...+++||++++++++|+||++||+|++++|++|+++++|++|.||++++++++++|++++|+|+|++++++||++
T Consensus 304 ~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~ 383 (798)
T PF02460_consen 304 RRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREA 383 (798)
T ss_pred hhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeccccCCCccC-----CCC-CCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhhhccCCCC
Q 003551 317 DKRVDCIPCLKLSSSYAD-----SDK-GIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGL 390 (811)
Q Consensus 317 ~~r~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~ 390 (811)
.+|++++||.+..+.+.+ ..+ ...........++++++|+|++.++++|++++++|++++++|+||+.+++.|+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gl 463 (798)
T PF02460_consen 384 AGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGL 463 (798)
T ss_pred hcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 999999888543221110 001 01122334678899999999999999999999999999999999999999999
Q ss_pred ccccccCCCchhhhhHHHHHhhc-cCCCCEEEEEec-CCCChhhhhhhhhhcccccCccchHHHHHHhccCCCCccccCC
Q 003551 391 EQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP 468 (811)
Q Consensus 391 ~~~~~~p~ds~~~~~~~~~~~~~-~~~~pv~ivv~~-~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~ 468 (811)
|+++++|+|||+.++++..++++ +.|+|+++++++ +|+++++.++ ++ .++++++++... ....++
T Consensus 464 d~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~~~-~l--------~~lv~~fe~~~~----~~~~~~ 530 (798)
T PF02460_consen 464 DPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPENQD-RL--------NSLVQEFENSPY----SIGNNS 530 (798)
T ss_pred ChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHHHH-HH--------HHHHHHHhcccc----cccccc
Confidence 99999999999999999998887 568999999986 6888875543 22 355666654321 122345
Q ss_pred CcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhhHHH
Q 003551 469 AASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWF 548 (811)
Q Consensus 469 ~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~ 548 (811)
+.+|+++|.+|+++.. ... .++. +.+.|++.+++|
T Consensus 531 t~~WL~~y~~~l~~~~---------~~~--~~~~----------------------------------~~~~~~~~l~~F 565 (798)
T PF02460_consen 531 TSFWLRDYLNFLNSIN---------SSF--QDDN----------------------------------DKEFFYNLLPEF 565 (798)
T ss_pred chhhHHHHHHHHhhcc---------ccc--cccc----------------------------------cceeeeccchhh
Confidence 6789999999996411 000 0000 012356677778
Q ss_pred HccCCCcccccCCCCCcccccccC--CCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCccccccccee
Q 003551 549 LNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFY 626 (811)
Q Consensus 549 l~~~p~~~~~~gg~~~y~~~v~~~--~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (811)
+.. |+ ...|..++.++ ..+.+.|.++|+++.+++..+.++..+.++++|+++++++ ++++++|+..+
T Consensus 566 L~~-~~-------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~---~~~~~~~~~~~ 634 (798)
T PF02460_consen 566 LNS-PE-------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYS---DFNVFVFSPFF 634 (798)
T ss_pred hcc-cc-------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcce---ecceEeeccch
Confidence 865 22 12356666654 2455679999999999999999999999999999998774 36788899999
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhccc
Q 003551 627 MYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVE 706 (811)
Q Consensus 627 ~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd 706 (811)
.++|||..+.+++++++++|+++|++++++++.+++.++++.+++.++.++++|+|++||++||++|+++++|++|++||
T Consensus 635 ~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v~l~~~iG~sVd 714 (798)
T PF02460_consen 635 IFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMVNLIMSIGFSVD 714 (798)
T ss_pred hhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHhchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 707 FCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 707 ~~ihi~~~f~~~~~-~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
|++|++|+|..+.+ ++++|+++|++.+|+||++|+ +||++|+++|+|+++++++.| |+++++++++|++|||++||+
T Consensus 715 ~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~-~st~l~~~~l~f~~~~~~~~f-f~~~~l~~~~~~~hglv~lPv 792 (798)
T PF02460_consen 715 FSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGA-LSTFLGVLPLAFSPSYIFRVF-FKTVFLVIIFGLLHGLVFLPV 792 (798)
T ss_pred HHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877 999999999999999999998 699999999999999999987 788888889999999999999
Q ss_pred HHHhh
Q 003551 786 VLSVF 790 (811)
Q Consensus 786 ll~~~ 790 (811)
+|+++
T Consensus 793 ~ls~~ 797 (798)
T PF02460_consen 793 LLSLF 797 (798)
T ss_pred HHHhc
Confidence 99987
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=4.6e-91 Score=812.31 Aligned_cols=695 Identities=24% Similarity=0.426 Sum_probs=585.7
Q ss_pred CCccccccccCCCCCccccHhhhhcCCCCCCCCccccccccccccccCCCccccccCCCCCCCCcccCCCC----CCccc
Q 003551 2 ISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYS 77 (811)
Q Consensus 2 ~~~~d~C~~~~~~~C~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lgg~~----~~~~~ 77 (811)
++|.|.|.++-+..|..+......+++.+.- .+.+++||.- ...|.|++.+..+||++ +++++
T Consensus 125 ~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lTYP~~---------~~~~~~~~l~~~f~GV~~~~~~~~i~ 191 (868)
T KOG1934|consen 125 ITYKDFCMRNCDVNCFYNLLLILLKRLTISR----PQFNLTYPIT---------EVFGDKIYLGPNFGGVKLGPEDGRIK 191 (868)
T ss_pred eehhhhhhcCCCcchhhHHHHHHhhcccCCC----CceEEecCcc---------ccCCCceecccccccceecCCCCcee
Confidence 4789999998778898888777776433221 2346777642 23478999999999984 36789
Q ss_pred cceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHHHHHHHH
Q 003551 78 EASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLV 157 (811)
Q Consensus 78 ~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~ 157 (811)
+|+|+++.|.++..++ +..+.+++||+++.+.++++. ++..+++++.+++.+++|+.+....-.+.+.+++++
T Consensus 192 sakav~L~y~~~~~~~---~~~~~~~~wE~~~~~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~i 264 (868)
T KOG1934|consen 192 SAKAVVLYYRLELKTD---ETEQVAKEWERSLEDYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAI 264 (868)
T ss_pred EEEEEEEEEEeecCCc---chHHHHHHHHHHHHHHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHH
Confidence 9999999999986443 356789999999999988764 344599999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceehHHHHHH
Q 003551 158 MFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVK 237 (811)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~ 237 (811)
|++|..+.. ++.+|++||++||++|+++.++|+++++|++.|+|.+++. +..++|||++||||||+|+++++||
T Consensus 265 l~~F~~~t~-----~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~ 338 (868)
T KOG1934|consen 265 LVIFSILTS-----FMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWR 338 (868)
T ss_pred HHHHHHHhh-----cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHH
Confidence 999877754 2356899999999999999999999999999999999998 6799999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003551 238 RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAED 317 (811)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~ 317 (811)
|+++..+.++|++++++|+|+||++||+|++++|++|++++.|++|.||+++++|++++|++|+|||.|+|++.++|+.+
T Consensus 339 rt~~~~~~~~Rm~~~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~ 418 (868)
T KOG1934|consen 339 RTSKKLSVEERMAETLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREAN 418 (868)
T ss_pred hcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeccccCCCccCCC-----CCCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhhhccCCCCcc
Q 003551 318 KRVDCIPCLKLSSSYADSD-----KGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ 392 (811)
Q Consensus 318 ~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~ 392 (811)
++++.++|...+.+..... +...+.++....++++++|++|+.++++|.+++++|++++.+++||+.+++.|+|+
T Consensus 419 ~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~ 498 (868)
T KOG1934|consen 419 GRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNPILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDP 498 (868)
T ss_pred ccCceeeeccCCccccccccccCcccccccccchHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCH
Confidence 8886555443332221110 11112345677889999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhhhhHHHHHhhcc-CCCCEEEEEec-CCCChhhhhhhhhhcccccCccchHHHHHHhccCCCCccccCCCc
Q 003551 393 KIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAA 470 (811)
Q Consensus 393 ~~~~p~ds~~~~~~~~~~~~~~-~~~pv~ivv~~-~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~~~ 470 (811)
++++|+|||+.++++..++++. .|.++.+++.+ +|+++++.+.+- ++++++++.. + .+...+.+.
T Consensus 499 ~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~np~dl~~~~~~~~~---------~~~~~~fE~~---~-~~~G~~sT~ 565 (868)
T KOG1934|consen 499 SKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVNNPPDLSNPENRDNL---------NELVSEFEST---P-YSMGRESTK 565 (868)
T ss_pred HHcccccCcchHHHHHHHHHhhccCceEEEEEcCCccCCCHHHHHHH---------HHHHHHHhcC---C-cccCcccch
Confidence 9999999999999999999985 47889998886 888877654432 3455555543 2 233345567
Q ss_pred ccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhhHHHHc
Q 003551 471 SWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLN 550 (811)
Q Consensus 471 ~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~ 550 (811)
+|+++|.+|.... +.... .+.++|+..+..++.
T Consensus 566 ~wlr~y~~~~~~~---------~~~~~--------------------------------------~~~~~~~~~~~~~fl 598 (868)
T KOG1934|consen 566 FWLREYLNFLFEK---------NAELE--------------------------------------DNDDEFYDHLYESFL 598 (868)
T ss_pred hHHHHHHHHHhhh---------ccccc--------------------------------------CCCcchhhhhHHHHh
Confidence 8999999984421 11100 011234444432322
Q ss_pred cCCCcccccCCCCCcccccccCC--CCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeee
Q 003551 551 ALPSASCAKGGHGAYTNSVDLKG--YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMY 628 (811)
Q Consensus 551 ~~p~~~~~~gg~~~y~~~v~~~~--~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (811)
..| ....|.+++.++. +++..+.+.|+.+..++..+.++..+.++.+|++++++ .++++.++.+.+.+
T Consensus 599 ~~~-------~~~~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~---~~fnvtvf~~~~~f 668 (868)
T KOG1934|consen 599 KSP-------EFSFWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEY---SDFNVTVFDPSFVF 668 (868)
T ss_pred ccc-------ccccCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhc---cCCCeEEecCchHH
Confidence 222 2235666666642 45567888999999999999999999999999999887 35778888888999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccch
Q 003551 629 FEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFC 708 (811)
Q Consensus 629 ~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ 708 (811)
.|||.++...++++++.++++|++++++++.++...+++.++++++.+|++|+|.+||++||++||+.++|+||++|||+
T Consensus 669 ~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~ 748 (868)
T KOG1934|consen 669 LDQYLSVVPVTIQSIVIALICMFLVCFLFIPNPLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFS 748 (868)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhccCC--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 709 VHITHAFSVSSG--DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVV 786 (811)
Q Consensus 709 ihi~~~f~~~~~--~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvl 786 (811)
+|++++|..+++ ++++|+++|++.+|+||++++ ++|++|++||++.++++.++| ++++++++.+|++|||++||++
T Consensus 749 AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~-lSTiL~v~pL~~V~sYmv~vF-~KTv~LVv~~GllHGLv~LPvi 826 (868)
T KOG1934|consen 749 AHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAG-LSTILGVLPLLFVPSYMVQVF-FKTVVLVVTLGLLHGLVFLPVI 826 (868)
T ss_pred hheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhh-hHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876 899999999999999999998 799999999999999999998 6888888999999999999999
Q ss_pred HHhhCCCC
Q 003551 787 LSVFGPPS 794 (811)
Q Consensus 787 l~~~~p~~ 794 (811)
|+.+++..
T Consensus 827 Ls~f~~~~ 834 (868)
T KOG1934|consen 827 LSLFPPIK 834 (868)
T ss_pred HHhcCcch
Confidence 99998633
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-70 Score=595.30 Aligned_cols=701 Identities=27% Similarity=0.428 Sum_probs=550.0
Q ss_pred CcccCCCCC---CccccceEEEEEEEeccCC----------------CcCccchHHHHHHHHHHHHHHHhhcccccCCCC
Q 003551 65 STALGGFSG---NNYSEASAFVVTYPVNNAV----------------DREGNETKKAVAWEKAFVQLAKDELLPMVQSKN 125 (811)
Q Consensus 65 ~~~lgg~~~---~~~~~A~a~~l~~~l~~~~----------------~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~ 125 (811)
.+++||... +...+|+|++-+|++-... ..+....+...+|++.|.+.+.+... ...
T Consensus 314 elIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~~vl~awQrnf~~~~~~~~~----~~~ 389 (1143)
T KOG1935|consen 314 ELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAAEVLQAWQRNFTKRVYQHLA----NER 389 (1143)
T ss_pred HHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----hhc
Confidence 445566432 4568899998777653210 11111124467999999988876543 266
Q ss_pred eEEEEeccccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhc
Q 003551 126 LTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 205 (811)
Q Consensus 126 ~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~ 205 (811)
-+++..++.+++|-+++.++-....++++|++|..|..+.+.||. +.++|...+|++||+.+.+|.++++|++.++
T Consensus 390 ~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~~----~~~~sq~~vglaGVllv~~ssaaGLGl~t~l 465 (1143)
T KOG1935|consen 390 RQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWW----DAVQSQGSVGLAGVLLVTFSSAAGLGLATLL 465 (1143)
T ss_pred ceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhh----hhhccccchhhhhhhhhhhHhhcchhHHHHh
Confidence 788999999999999999999989999999999999999887743 3589999999999999999999999999999
Q ss_pred ccccchhhhhhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHH
Q 003551 206 GVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 285 (811)
Q Consensus 206 g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f 285 (811)
|+.||.-.+.++|||.+|+||||+|.+.++|++..+. ++++++.++++|.||++||+.++.+|+.+++.|+|++|.|
T Consensus 466 GI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsF 542 (1143)
T KOG1935|consen 466 GIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSF 542 (1143)
T ss_pred ceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHH
Confidence 9999998999999999999999999999999996554 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccC-----------CCCC------------C---
Q 003551 286 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD-----------SDKG------------I--- 339 (811)
Q Consensus 286 ~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~-----------~~~~------------~--- 339 (811)
|..+|+-+.++|+..++.|||++++|.||++.+|.|++||....++... +... .
T Consensus 543 clQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~p~~v~~~~~~s~~~~~~g~tr~~~~~~ 622 (1143)
T KOG1935|consen 543 CLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSVPSNVSNNTLASIMQEPDGSTRALLAQS 622 (1143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCCCcccCCCcccccccCCCcchhhhhccC
Confidence 9999999999999999999999999999999999999999774332110 0000 0
Q ss_pred CCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCCCCE
Q 003551 340 GQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 419 (811)
Q Consensus 340 ~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv 419 (811)
.+...--+..|.+++|+|+++++++|.++++.|++++++|.||+++.+.|+|..+.+|+++.-.++.+..++||+.+ |+
T Consensus 623 ~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel~DvvP~~t~~~~FL~Aq~kyFsfY-~m 701 (1143)
T KOG1935|consen 623 SHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLELTDVVPEHTAEAAFLRAQDKYFSFY-PM 701 (1143)
T ss_pred CCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchhhhcCCCCCcHHHHHHHHhhhcccc-hh
Confidence 01111236789999999999999999999999999999999999999999999999999999999999999999865 78
Q ss_pred EEEEec-CCCChhhhhhhhhhcccccCccchHHHHHHhccCCCCccccCC-----CcccHHHHHhhhCcC--cccccccC
Q 003551 420 YFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP-----AASWLDDFLVWISPE--AFGCCRKF 491 (811)
Q Consensus 420 ~ivv~~-~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~-----~~~wl~d~~~~l~~~--~~~~~~~~ 491 (811)
+.|.++ .||...++. ++++.+. ..+.+++.++ ...|+.-|.+|+... .++.. .
T Consensus 702 ~aVtqg~~dyp~qQ~l---------------l~dyh~s--f~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded--~ 762 (1143)
T KOG1935|consen 702 FAVTQGPFDYPHQQQL---------------LDDYHQS--FGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDED--W 762 (1143)
T ss_pred heeecCCCCcccHHHH---------------HHHHHHH--hccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHH--H
Confidence 888886 677543221 2222221 2233444332 356999999998531 11110 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcc-----CCCCcccccCC-CCCCCCChhhHHhhhHHHHccCCCccc-ccCC---
Q 003551 492 TNGSYCPPDDQPPCCPSGQSSCGSAGVC-----KDCTTCFHHSD-LLKDRPSTIQFKEKLPWFLNALPSASC-AKGG--- 561 (811)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~p~~~~f~~~l~~~l~~~p~~~~-~~gg--- 561 (811)
..+.+...+.-+ ...++..-+++-+| .+|.....+.+ ...+..+++.|+.||..|.+..|-.-. ..+.
T Consensus 763 a~G~~~~~~~v~--n~S~d~~lA~kL~~qtG~~~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP 840 (1143)
T KOG1935|consen 763 AKGRFTLTSGVS--NGSEDARLAYKLLCQTGSLDNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYP 840 (1143)
T ss_pred hcCccccccCCC--CCChHHHHHHHHHHhcCCccchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCC
Confidence 111111111000 00000011111111 23433222222 234566789999999988876442100 0000
Q ss_pred -CCCcccccccC--CCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHH
Q 003551 562 -HGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 638 (811)
Q Consensus 562 -~~~y~~~v~~~--~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 638 (811)
+..|..+.+.. ......+..+++.++...+.+..+++++++.+|..+++++ ..|...||.|.+++|+|||..+..+
T Consensus 841 ~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~-s~Gl~nyPsGiPF~FWEQYl~Lrg~ 919 (1143)
T KOG1935|consen 841 TPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVKAIESIRASCEEYT-SLGLPNYPSGIPFTFWEQYLTLRGN 919 (1143)
T ss_pred CCccccccccccccccccccchhccCchHHhhhhhHHHHHHHHHHHHHHHhhcc-cCCCcCCCCCCccHHHHHHHHHHHH
Confidence 11122221110 0112345556777888888889999999999999999997 5788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhcc
Q 003551 639 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS 718 (811)
Q Consensus 639 ~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~ 718 (811)
.+..+.+-++.++.++.+++-+.|++.++..++.+..+.++|+|++.||++|+++.+.++.++|++|+|++|+...|..+
T Consensus 920 l~~~IcIil~~vf~vcs~ll~npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~i~aViLi~sVGigveFtvhv~l~FlTs 999 (1143)
T KOG1935|consen 920 LLQAICIILLAVFCVCSVLLLNPWAAGLIVCSLAIMTVELFGFMGLLGIKLSAIPAVILIASVGIGVEFTVHVALGFLTA 999 (1143)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhceeeccchhHHHHHHhhhchhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccc
Q 003551 719 SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML 798 (811)
Q Consensus 719 ~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~~~ 798 (811)
-+++..|...|+..+..|+..++ +||.+|+..|.++++.....|||..+.+++.+|.++||+++||+|+++||+++..+
T Consensus 1000 ~G~rs~R~s~al~~~F~Pv~hG~-lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~pEl~p 1078 (1143)
T KOG1935|consen 1000 LGTRSQRASSALQHMFVPVSHGA-LSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPKPELSP 1078 (1143)
T ss_pred hccchhHhHHhhhhcchhhhhhH-HHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCccccc
Confidence 99999999999999999999998 79999999999999999888888888888899999999999999999999887644
Q ss_pred hh
Q 003551 799 VE 800 (811)
Q Consensus 799 ~~ 800 (811)
.+
T Consensus 1079 ~~ 1080 (1143)
T KOG1935|consen 1079 TD 1080 (1143)
T ss_pred CC
Confidence 43
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=8.5e-53 Score=481.36 Aligned_cols=550 Identities=19% Similarity=0.287 Sum_probs=416.1
Q ss_pred CCCCeEEEEeccccHHHHHhhhcccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 122 QSKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 122 ~~~~~~v~~~~~~s~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
.+.+.+.+.+|+..+.+.+.+....|+.. ..++.++|++.+.+.+++++. ++.+++.+++|++|++|
T Consensus 172 ~~~~~~~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~~~------------~llpL~~~l~sv~~tlG 239 (727)
T COG1033 172 FPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSVRR------------ALLPLIIVLVSVLWTLG 239 (727)
T ss_pred CCCCCeEEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHH
Confidence 45688999999999999999999888876 456666676666667776542 78999999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhc-cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 279 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~ 279 (811)
+|+|+|+|++. .+...|.+++|+|+||++|+.|+|.+++ .+.+++||+.+|++++|+|++++.+||++||++++++.+
T Consensus 240 ~m~llG~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i 318 (727)
T COG1033 240 AMGLLGIPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSI 318 (727)
T ss_pred HHHHhCCCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHccc
Confidence 99999999997 7899999999999999999999998854 568999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhccccc
Q 003551 280 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATIL 359 (811)
Q Consensus 280 ~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l 359 (811)
|++++||+.+.+|+..+++.++++.|+++.+..+..+ ++. +.+ ..+.+.+...+.+ .+.+.
T Consensus 319 ~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~-~~~------~~k-----------~~~~~~~~~~l~~-i~~~~ 379 (727)
T COG1033 319 PAIKEFGILLSIGIILAFLSSLTVLPALLILIPKGRK-KRE------EKK-----------DSKKGKLEKRLSK-IAKII 379 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhh-hhh------hcc-----------cccchhHHHHHHH-HHHHh
Confidence 9999999999999999999999999998877655432 110 000 0011222222222 24455
Q ss_pred ccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEecCCCChhhhhhhhhh
Q 003551 360 SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLC 439 (811)
Q Consensus 360 ~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~~~~~~~~~~~~~~~ 439 (811)
.++++ .++++.+++.+++.||..+++.++|.++++|+|++..+.++.+++++++..+++++++..|-.||+..+.
T Consensus 380 ~~~~~--~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~l~~--- 454 (727)
T COG1033 380 ARHPV--TVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEVLRW--- 454 (727)
T ss_pred HhhhH--HHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHHHHH---
Confidence 56553 4455566788899999999999999999999999999999999999998899999999766566543211
Q ss_pred cccccCccchHHHHHHhccCCCCccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003551 440 SISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVC 519 (811)
Q Consensus 440 ~~~~~~~~sl~~~i~~~~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (811)
.+++.+.+++.+.+ + .+..+-++-..+. |+
T Consensus 455 ------md~l~~~l~~~~~~-----V-~s~~siv~~vk~~-------------~~------------------------- 484 (727)
T COG1033 455 ------MDELEEELEKGEEH-----V-FSASSIVDLVKQV-------------NG------------------------- 484 (727)
T ss_pred ------HHHHHHHHHhccee-----e-eccchHHHHHHHH-------------hc-------------------------
Confidence 12333333322110 1 1111111111111 00
Q ss_pred CCCCcccccCCCCCCCCChhhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHH
Q 003551 520 KDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVN 599 (811)
Q Consensus 520 ~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~ 599 (811)
...|+..+ ++.-++..|+... ..|- .++.....++ .....+.+...
T Consensus 485 -------------~~~p~~~~----~~~i~~~~~~~~~-----~~~~--------s~~~~~~~~~----~~~~~~~~~~~ 530 (727)
T COG1033 485 -------------GIIPDKSK----IQIILEELPESIK-----KRYI--------SGDQLNLLGY----SLGDTQGELED 530 (727)
T ss_pred -------------CCCCcchh----HHHHHHhcchhHh-----hccc--------CCCceeeeec----ccccchhHHHH
Confidence 00111111 1111222222110 0010 0111111111 11123344444
Q ss_pred HHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 003551 600 SMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLM 679 (811)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~ 679 (811)
..++..+..++...+.+++++.+|..+++.+....+.+++..+..+++++|++++++.|||+..++.+++++.+++.+.+
T Consensus 531 ~~~~~~~~i~~~~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~~~~ 610 (727)
T COG1033 531 VGREILRDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNF 610 (727)
T ss_pred HHHHHHHHHHhhcCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHH
Confidence 44333333333333467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccCC-C-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc
Q 003551 680 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-D-KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT 757 (811)
Q Consensus 680 g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~~-~-~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~ 757 (811)
|+|+++||++|+.++....+.+|++|||+||++++|+++++ . ++||+.+|++++|++|+.++ +||+.||+.|.||++
T Consensus 611 ~~M~l~gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~-ltt~~GF~aLi~S~f 689 (727)
T COG1033 611 GLMGLLGIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASA-LTTAIGFLALIFSPF 689 (727)
T ss_pred HHHHHhCCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHH-HHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999998764 3 89999999999999999997 799999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 758 EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 758 ~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
++...| +.+....++++++.+|+++|++|.++.++.
T Consensus 690 ~i~snf-Gll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 690 PIISNF-GLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999997 566666789999999999999999987653
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=2.6e-47 Score=459.49 Aligned_cols=546 Identities=14% Similarity=0.150 Sum_probs=397.7
Q ss_pred CCCCeEEEEeccccHHHHHhhhcccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 122 QSKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 122 ~~~~~~v~~~~~~s~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
.++++++++.|...+..++.+....+... ..++++++++.+.+.+|+++ .++.+++++++++++++|
T Consensus 169 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~~------------~~~~~l~~~~~~~~~~~g 236 (719)
T TIGR00921 169 PPSGKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWW------------RPLLPLVIILFGVAWVLG 236 (719)
T ss_pred CCCCcEEEecCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 34578999999988888777777666654 56677777666666666543 278889999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 279 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~ 279 (811)
+++++|++++. .+..+|.+++|+|+||++|++++|+++ +++.+.++++.++++++|++++.|++|+++||+++.++++
T Consensus 237 ~~~~~g~~l~~-~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~ 315 (719)
T TIGR00921 237 IMGWLGIPLYA-TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEF 315 (719)
T ss_pred HHHHhCCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999997 678899999999999999999999875 5788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhccccc
Q 003551 280 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATIL 359 (811)
Q Consensus 280 ~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l 359 (811)
|.+|+||++++++++++++.++|++|+++.+..++.++.+.. .... +++.+.+.+++.+. +.+.
T Consensus 316 ~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~l~~~-~~~~ 379 (719)
T TIGR00921 316 PMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKKE-----IIAI----------GGKSSEIEEELSKV-LSIT 379 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-----cccc----------cCcchHHHHHHHHH-HHHH
Confidence 999999999999999999999999999998765543221110 0000 11223445555543 4455
Q ss_pred ccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCC-CCEEEEEecCCCChhhhhhhhh
Q 003551 360 SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSESRQTNQL 438 (811)
Q Consensus 360 ~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~-~pv~ivv~~~~~~~~~~~~~~~ 438 (811)
.+++. .++++++++.++++++..+++.+.|+.+++|+|++.++.++.++++|++. .+.+++++..+..+++..+ .+
T Consensus 380 ~r~~~--~vl~v~lll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~~l~-~l 456 (719)
T TIGR00921 380 VRHPV--PALVAALIITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPELVR-FM 456 (719)
T ss_pred HhCCc--HhHHHHHHHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHHHHH-HH
Confidence 55543 34455567788899999999999999999999999999999999999865 6788888865554443211 11
Q ss_pred hcccccCccchHHHHHHhccCCCCccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003551 439 CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 518 (811)
Q Consensus 439 ~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (811)
+++.+.+++ .+....+.++ .-+.++.+..++. ++
T Consensus 457 --------~~l~~~l~~---~~~v~~v~~~--~si~~~~~~~~~~--------------~~------------------- 490 (719)
T TIGR00921 457 --------DELSRDIKA---TGVAARVFGA--PSIIDLVKEVEGL--------------PA------------------- 490 (719)
T ss_pred --------HHHHHHHhh---ccccCcccCC--CCHHHHHHHhcCC--------------CC-------------------
Confidence 122222222 1111111111 1122222221110 00
Q ss_pred cCCCCcccccCCCCCCCCChhhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHH
Q 003551 519 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYV 598 (811)
Q Consensus 519 ~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~ 598 (811)
|+... .+. .|++. ++ .| +. .+ .. +......... ..+..
T Consensus 491 -----------------~~~~~-~~~-------lp~~~--~~---~~---i~----~~-~~---~v~~~~~~~~-~~~~~ 528 (719)
T TIGR00921 491 -----------------PERSA-LEP-------IPEDE--EG---GY---IS----GG-QI---KVAVIQVQLK-QGEPK 528 (719)
T ss_pred -----------------CCchH-HHh-------CCHHH--hc---ce---ec----CC-ce---EEEEEecCCc-chhHH
Confidence 00000 000 11100 00 00 00 00 00 1111111111 12223
Q ss_pred HHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 003551 599 NSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDL 678 (811)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~ 678 (811)
+..+++.+..++...+.++++...|...++.|....+.++......++++++++++++.|+|++.+++.++++.++++++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~~~~~~ 608 (719)
T TIGR00921 529 VQGRKILRDVQHEHPPPGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWA 608 (719)
T ss_pred HHHHHHHHHHhccCCCCCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333332222222234667788888888888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccC
Q 003551 679 MGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 756 (811)
Q Consensus 679 ~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~--~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~ 756 (811)
+|+|+++|+++|+.+++.+.+.+|++|||++|+.++|+++. ++.++|+.+|++++|+||+.++ +|+++||++|++++
T Consensus 609 ~g~~~~~gi~l~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~-lt~~~gf~~l~~s~ 687 (719)
T TIGR00921 609 IGLMGLRGIPSFLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSG-LTTAGGFLSLLLSH 687 (719)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998864 3788999999999999999997 79999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003551 757 TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 789 (811)
Q Consensus 757 ~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~ 789 (811)
.+.++.| +.+....++++++++++++|+++.+
T Consensus 688 ~~~~~~~-g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 688 FPIMRNF-GLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 4555566788999999999999863
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=2.7e-41 Score=411.09 Aligned_cols=581 Identities=15% Similarity=0.173 Sum_probs=395.5
Q ss_pred CCCCeEEEEeccccHHHHHhhhcccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 122 QSKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 122 ~~~~~~v~~~~~~s~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
.++++++++.|...+..+..+....|... ..++++++++.+.+.+|+++ .++.+++.+++++++++|
T Consensus 149 ~~~g~~v~vtG~~~~~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~~------------~~llpl~~i~lsi~~~~g 216 (910)
T TIGR00833 149 APDGLTVHVTGPLATIADILESGDKDMNRITATTGIIVLIILLLVYRSPI------------TMLVPLVSVGFSVVVAQG 216 (910)
T ss_pred CCCCeEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 35689999999988877777777777665 45666666666666666542 267788899999999999
Q ss_pred HHhhccccc----chhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 003551 201 FFSAIGVKS----TLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGS 275 (811)
Q Consensus 201 l~~~~g~~~----~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~ 275 (811)
++.++|.+. +......++.+++|+|+||+++++++|+++ +++.++++++.++++++|++++.+++|++++|+.+.
T Consensus 217 ~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~ 296 (910)
T TIGR00833 217 IVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALS 296 (910)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999863 332233445788999999999999999985 567899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhc
Q 003551 276 FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 355 (811)
Q Consensus 276 ~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 355 (811)
++++|.+|+||+.++++++++++..+|+.||++.+.+||...++ + +.+...+++++ .
T Consensus 297 ~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~~~~~~---------~-------------~~~~~~~~~~~-l 353 (910)
T TIGR00833 297 LARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMKP---------G-------------RKSKIRFIWRR-L 353 (910)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---------c-------------ccchHhHHHHH-H
Confidence 99999999999999999999999999999999999876531100 0 00112223332 2
Q ss_pred ccccccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCC--CCEEEEEecC-CCChhh
Q 003551 356 ATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKNY-NYSSES 432 (811)
Q Consensus 356 ~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~--~pv~ivv~~~-~~~~~~ 432 (811)
+.++.+++. .+++++++++++++++..+++.++|..+++|+|++.++.++.++++|+.+ .|++++++.. +..+++
T Consensus 354 ~~~v~r~p~--~vl~v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~ 431 (910)
T TIGR00833 354 GTAVVRRPW--PILVTTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPA 431 (910)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHH
Confidence 445666653 34455667788889999999999999999999999999999999999876 7889988853 444442
Q ss_pred hhhhhhhcccccCccchHHHHHHhccCCCCccccC---CCc---------------------------------------
Q 003551 433 RQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAK---PAA--------------------------------------- 470 (811)
Q Consensus 433 ~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~---~~~--------------------------------------- 470 (811)
..+ .+ +++.+.+++ .|+...+.. |..
T Consensus 432 ~l~-~l--------~~l~~~l~~---~~gV~~V~~~~~p~g~~~~~~~~~~q~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (910)
T TIGR00833 432 LLA-DI--------DRFEREIKA---VPGINMVQETQRPDGVVIKKTYLTFQAGNLGDQLDEFSDQLTSRQAYLLQDAEK 499 (910)
T ss_pred HHH-HH--------HHHHHHHhc---CCCcceeecCCCCCCCccchhhHHHHHhhHhhhHHhhhhhHHHHHhhHHHHHHH
Confidence 211 00 111111111 111111100 000
Q ss_pred -----------------------------------------------ccHHHHHhhhCcCcccccccCCCCCCCCCCCCC
Q 003551 471 -----------------------------------------------SWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP 503 (811)
Q Consensus 471 -----------------------------------------------~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (811)
.|++-..+|.... ..| +.+.
T Consensus 500 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~-- 566 (910)
T TIGR00833 500 IAEAIAGLRLVQAGMRLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRRFVAAI-PEC----------RANP-- 566 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCc----------ccCh--
Confidence 0111111111110 011 0000
Q ss_pred CCCCCC----------------------------------------------------CCC--------------C----
Q 003551 504 PCCPSG----------------------------------------------------QSS--------------C---- 513 (811)
Q Consensus 504 ~~~~~~----------------------------------------------------~~~--------------~---- 513 (811)
.|..+. +.. -
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (910)
T TIGR00833 567 VCSVAREIVQAADTVVSSAAKLADAAGQLARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMT 646 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000 0
Q ss_pred --CCCCccCCCCcccccCCCCCCCCChhhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCC
Q 003551 514 --GSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPL 591 (811)
Q Consensus 514 --~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~ 591 (811)
.......+-..++. ...-+.++|.+.+..|++ .++. .+++.+..+.-
T Consensus 647 ~~~~~~~~~~~~f~~p-----~~~~~~~~f~~~~~~~~s------------------------~dg~--~~~~~v~~~~~ 695 (910)
T TIGR00833 647 MGKLKGNAMGVDFYAP-----PRIFTDPNFKAVLDYFLS------------------------PDGH--AARLLVYGDGS 695 (910)
T ss_pred HHHhhhhcccCCcccC-----hHHhCCHhHHHHHHHhcC------------------------CCCC--eEEEEEEeCCC
Confidence 00000000000000 000012334333333222 1121 23444443322
Q ss_pred CChhHHHHHHHHHHHHHHHhhh---hcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 003551 592 NRQIDYVNSMRAAREFSSRVSD---SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIIL 668 (811)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~ 668 (811)
...++..+.++++|+..++..+ ..+.+++..|......|....+.++......+++++++++++++|||+..+++.+
T Consensus 696 p~~~~~~~~v~~lr~~~~~~~~~~~~~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~~~pl~~l 775 (910)
T TIGR00833 696 PAGDQGAQEFNAIRTVAEEAIQRADLEPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAPVAPIVLI 775 (910)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2233445677777776654322 1346677888887777887888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc-----chh-HHHHHHHHhhhhcccchhhhhHHhhccCC-CHHHHHHHHHHHhhHHHHHHH
Q 003551 669 LVLTMIVVDLMGVMAILKIQ-----LNA-VSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGI 741 (811)
Q Consensus 669 ~~i~~~~~~~~g~m~l~gi~-----Ln~-~s~i~~~~~iGi~Vd~~ihi~~~f~~~~~-~~~~~~~~al~~~g~pv~~~~ 741 (811)
+++.+++...+|+++|.+.+ ++. +.++..++.+|+++||++|+..+|+++.+ +.++++.+|++++|++|+.++
T Consensus 776 ~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~ 855 (910)
T TIGR00833 776 GSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAG 855 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHH
Confidence 99999999999999876544 443 44566788899999999999999998753 456899999999999999997
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 003551 742 TLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 796 (811)
Q Consensus 742 ~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~ 796 (811)
+|+++||..|++++...++.+.+.+.+++++-.++..++++|+++.++|+...+
T Consensus 856 -~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~~ww 909 (910)
T TIGR00833 856 -LVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRWIWW 909 (910)
T ss_pred -HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 799999999999999999987444444443336777789999999999987543
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=8.7e-38 Score=380.73 Aligned_cols=577 Identities=15% Similarity=0.176 Sum_probs=363.9
Q ss_pred CCCeEEEEeccccHHHHHhhhcccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 201 (811)
Q Consensus 123 ~~~~~v~~~~~~s~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl 201 (811)
++++++++.|+..+..+..+....|+.. ..++++++++.+++.+|+++. .+..++++++++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~------------~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRL------------VFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHHHHHHHHH
Confidence 4689999999988887777777777766 567777777777777776542 667788999999999999
Q ss_pred HhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCCh
Q 003551 202 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280 (811)
Q Consensus 202 ~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~ 280 (811)
+.++|.++|. ++.+.+.+++|+|+||++|++++|+++ .++.+.++++.+++++.|+|++++++|++++|+++.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999997 778889999999999999999999875 46778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccc
Q 003551 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 360 (811)
Q Consensus 281 ~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~ 360 (811)
++++||+++++|++++++.++|++|+++.+..++. ++. .....++.++ ..+..
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~--~~~--------------------~~~~~~~~~~-----~~~~~ 445 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPR--RRK--------------------PPGYATLAPL-----DAFLR 445 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccc--------------------CccchhHHHH-----HHHHH
Confidence 99999999999999999999999999998762111 000 0011122222 22344
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCCC-CEEEEEecCCCChhhhhhhhhh
Q 003551 361 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGP-PLYFVVKNYNYSSESRQTNQLC 439 (811)
Q Consensus 361 ~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~-pv~ivv~~~~~~~~~~~~~~~~ 439 (811)
+++ ..+++++++++++++++..+++.++++.+++|++++..+.++.+.+....++ +..++.++. +. .+
T Consensus 446 ~~~--~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~~~-----~~-~~--- 514 (862)
T TIGR03480 446 RHR--RPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAPSA-----PE-AR--- 514 (862)
T ss_pred hcc--HHHHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecCCH-----HH-HH---
Confidence 443 3344556677788899999999999999999999999888888888766543 233333321 10 00
Q ss_pred cccccCccchHHHHHHhccCCCCccccC------CC--ccc--HHHHHhhhCcCcccccccCCCCCCCCCC-CCCCCCCC
Q 003551 440 SISQCDSNSLLNEISRASLIPQSSYIAK------PA--ASW--LDDFLVWISPEAFGCCRKFTNGSYCPPD-DQPPCCPS 508 (811)
Q Consensus 440 ~~~~~~~~sl~~~i~~~~~~~~~~~i~~------~~--~~w--l~d~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 508 (811)
++.+++++ .|+...+.. +. ..| ++++.+-+.+.. ......+.. +++...-.
T Consensus 515 --------~~~~~l~~---~~~V~~v~sl~~~v~~~q~~kl~~i~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~l 576 (862)
T TIGR03480 515 --------ALTERLEA---LPEVDQVVTLPDFVPDDQEAKLALIADLALVLGPTL-------NPGEADPAPSAEEVAAAL 576 (862)
T ss_pred --------HHHHHHhC---CCCcceEeehhhcCCCCHHHHHHHHHHHHHHhCccc-------CCccCCCCCChHHHHHHH
Confidence 11222222 222111000 00 000 011111111100 000000000 00000000
Q ss_pred CCC-----CCCCCCccCCCCccc---c-cCCCCCCCCChhhHHhhhH-HHHccCCCccc-----ccCCCCCcc---ccc-
Q 003551 509 GQS-----SCGSAGVCKDCTTCF---H-HSDLLKDRPSTIQFKEKLP-WFLNALPSASC-----AKGGHGAYT---NSV- 569 (811)
Q Consensus 509 ~~~-----~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~~f~~~l~-~~l~~~p~~~~-----~~gg~~~y~---~~v- 569 (811)
++. ........++|..-. . .+.+....++..+-.+.+. .+....|+..- .+...-.++ .+.
T Consensus 577 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~lp~~~~ 656 (862)
T TIGR03480 577 RRLAARLRAAAAKSQDPDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVTLEDLPPDLR 656 (862)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCChhhCCHHHH
Confidence 000 000000000110000 0 0000000000000000000 00000010000 000000000 000
Q ss_pred -ccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHH
Q 003551 570 -DLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG 648 (811)
Q Consensus 570 -~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~ 648 (811)
.+. .+++. .+..++.+ .+..+ .+..++..+++.+. .-...|....+.+....+..+....+.++++
T Consensus 657 ~~~~-~~~~~---~~l~v~~~--~~~~~----~~~l~~~~~~v~~~---~~~~tG~~~~~~~~~~~i~~~~~~~~~~a~~ 723 (862)
T TIGR03480 657 RRWV-AKDGR---ARLEVFPK--EDLND----NEALRRFVRAVRKV---APDATGAPVSILESGDTVVGAFLQAFIYALV 723 (862)
T ss_pred HhHc-CCCCC---EEEEEecC--CCcch----HHHHHHHHHHHHhh---CCCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 010 01121 12222222 11111 11222222222211 0123466666666667788888888999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccCCCHHHHHHH
Q 003551 649 AVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKE 728 (811)
Q Consensus 649 ~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~~~~~~~~~~ 728 (811)
+|++++++.++|++.++++++++.++++.++|+|+++|+++|..+++.+.+.+|++|||+||+.++|+++.+.. ...
T Consensus 724 ~i~lll~~~frs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~--~~~- 800 (862)
T TIGR03480 724 AITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSG--NLL- 800 (862)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccch--hHH-
Confidence 99999999999999999999999999999999999999999999999999999999999999999998775321 111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 729 ALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 787 (811)
Q Consensus 729 al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll 787 (811)
..++|++|+.++ +||++||..|+|++.+..+.| +.+....++++++.+++++|+++
T Consensus 801 -~~~~g~ai~~sa-ltt~~gf~~l~~s~~~~~~~~-G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 801 -QSSTARAVFFSA-LTTATAFGSLAVSSHPGTASM-GILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred -HhhhHHHHHHHH-HHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 246899999997 799999999999999999987 45555567889999999999987
No 11
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=100.00 E-value=2.3e-32 Score=336.81 Aligned_cols=615 Identities=13% Similarity=0.100 Sum_probs=346.5
Q ss_pred CCCeEEEEeccc--cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~--s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++.+.++. .+++.++.... .+.++++++++.+++.+++++. ++...++++++++.+++
T Consensus 312 P~g~~~~~~~d~~~~i~~~~~~~~~----~~~~~~~lv~~vl~l~l~~~r~------------~li~~~~ip~s~~~~~~ 375 (1025)
T PRK10614 312 PAAIDLQIAQDRSPTIRASLEEVEQ----TLAISVALVILVVFLFLRSGRA------------TLIPAVAVPVSLIGTFA 375 (1025)
T ss_pred CCCcEEEEeecCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence 456666665544 45555555443 3455555555555666676543 77888999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHH-hccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 279 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~ 279 (811)
++.++|.++|. ++...+.+++|+.|||++++++++++ .+++.++.+++.++.++++.+++.+++|++++|+...+.+.
T Consensus 376 ~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g 454 (1025)
T PRK10614 376 AMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454 (1025)
T ss_pred HHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999997 67777788899999999999988876 45678999999999999999999999999999998877654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcc
Q 003551 280 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 356 (811)
Q Consensus 280 ---~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 356 (811)
+.++.|++..+++++++++.++|+.|+++++..++...++.. .. ...+..+++ +++.|.
T Consensus 455 ~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~---------~~--------~~~~~~~~~-l~~~Y~ 516 (1025)
T PRK10614 455 LPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQK---------RL--------RGFGRMLVA-LQQGYG 516 (1025)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc---------ch--------hhHHHHHHH-HHHHHH
Confidence 469999999999999999999999999988765432100000 00 000111211 223343
Q ss_pred cc---cccccchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhhHHH---HHhhccCCCCEEE
Q 003551 357 TI---LSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGYFNN---ISEHLRIGPPLYF 421 (811)
Q Consensus 357 ~~---l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~~~~~~pv~i 421 (811)
++ ..++ +..+++++++++++++++..+++.++-|.. .+|+++.+.+..+. +++.+...+.+.-
T Consensus 517 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~ 594 (1025)
T PRK10614 517 RSLKWVLNH--TRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDN 594 (1025)
T ss_pred HHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 33 3333 334455566677778887777777666532 44777766544333 3444443344433
Q ss_pred EEecCCCChhhhhhhhhhccc---cc--CccchHHHHHHh-ccCCCCccccCCCcccHHHHHhhhCc--CcccccccCCC
Q 003551 422 VVKNYNYSSESRQTNQLCSIS---QC--DSNSLLNEISRA-SLIPQSSYIAKPAASWLDDFLVWISP--EAFGCCRKFTN 493 (811)
Q Consensus 422 vv~~~~~~~~~~~~~~~~~~~---~~--~~~sl~~~i~~~-~~~~~~~~i~~~~~~wl~d~~~~l~~--~~~~~~~~~~~ 493 (811)
+.....-..++.....+ ... .. ..+++.+++.+. .+.|+......+. .+. ..-.+ ...-..+...+
T Consensus 595 v~~~~g~~~~~~~~~~v-~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~----~~~-~~~g~~~~~~i~i~l~G~ 668 (1025)
T PRK10614 595 VTGFTGGSRVNSGMMFI-TLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAV----QDI-RVGGRQSNASYQYTLLSD 668 (1025)
T ss_pred EEEEecCCCCceeEEEE-EecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCC----ccc-CcCCCCCCCCEEEEEECC
Confidence 33210000000000000 000 00 112334444332 1122211000000 000 00000 00000000000
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCccCCCCc---ccc--c-CC-CCCCCCChhhHHhhhHHHHccCCCcccccCCCCCc
Q 003551 494 GSY-CPPDDQPPCCPSGQSSCGSAGVCKDCTT---CFH--H-SD-LLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAY 565 (811)
Q Consensus 494 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~-~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y 565 (811)
... .....++.-....+. .....+..+... -++ . +. ....--+.++..+.+...+...+-.....|+ ..|
T Consensus 669 d~~~L~~~a~~i~~~L~~~-pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~~~G~~~~~~~~~~-~~~ 746 (1025)
T PRK10614 669 DLAALREWEPKIRKALAAL-PELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPL-NQY 746 (1025)
T ss_pred CHHHHHHHHHHHHHHHhcC-CCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceeeEEecCC-eEE
Confidence 000 000000000000000 000000000000 000 0 00 0000011223333333333221100000010 011
Q ss_pred ccccc----------------cCCCCCCeEEEEEE----------Eeecc----------CCCChhHHHHHHHHHHHHHH
Q 003551 566 TNSVD----------------LKGYENGIVQASSF----------RTYHT----------PLNRQIDYVNSMRAAREFSS 609 (811)
Q Consensus 566 ~~~v~----------------~~~~~~~~i~~sr~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~ 609 (811)
.-.+. +...+...+.-+.+ .+.+. +.....+..+..+.+++..+
T Consensus 747 ~i~v~~~~~~~~~~~~L~~l~i~~~~G~~vpL~~vA~i~~~~~p~~I~r~n~~~~i~v~a~~~~g~~~~~~~~~i~~~l~ 826 (1025)
T PRK10614 747 KVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIERAMT 826 (1025)
T ss_pred EEEEEeChhHcCCHHHHhceEEECCCCCEEEhhHeEEEEEcCCcccEEecCCeeEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 10000 00000001110000 00000 11111122334444444444
Q ss_pred HhhhhcCcccccccceeeehhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 003551 610 RVSDSLQMEIFPYSVFYMYFEQ---YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILK 686 (811)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~g 686 (811)
+++ .|.|..+.+.++ ..+...++...+++|+++||+++.++|+|++.+++++++++++++|++..++++|
T Consensus 827 ~~~-------lP~g~~~~~~G~~~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPlal~G~~~~L~l~g 899 (1025)
T PRK10614 827 QLG-------VPSTVRGSFAGTAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFN 899 (1025)
T ss_pred hCC-------CCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 321 333444444333 3445567788899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhhhcccchhhhhHHhh---cc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCch---h
Q 003551 687 IQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---V 759 (811)
Q Consensus 687 i~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~---~~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~---~ 759 (811)
.+||..+++++++.+|+.|+++|-+...+. ++ +.+.++|+.+|.+.+.+||++|+ +||++|++||+++.+. +
T Consensus 900 ~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt-lTti~GllPlal~~g~g~~~ 978 (1025)
T PRK10614 900 APFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT-LAALFGALPLVLSGGDGAEL 978 (1025)
T ss_pred CCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999998875433 23 34889999999999999999996 8999999999998643 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003551 760 FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 760 ~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~ 791 (811)
.+.+ ...+++.+++|.+.+|+++|++|.++.
T Consensus 979 ~~pm-Ai~iigGL~~sT~ltL~vvP~lY~~~~ 1009 (1025)
T PRK10614 979 RQPL-GITIVGGLVMSQLLTLYTTPVVYLFFD 1009 (1025)
T ss_pred hCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 233445678889999999999999994
No 12
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=100.00 E-value=4e-32 Score=334.71 Aligned_cols=624 Identities=12% Similarity=0.104 Sum_probs=349.0
Q ss_pred CCCeEEEEeccc--cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~--s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++.+..+. .+++.++.. ...+.++++++++.+.+.++++|. ++...++++++++.+++
T Consensus 318 P~g~~~~~~~d~~~~i~~~~~~~----~~~~~~a~~lv~lvl~l~l~s~r~------------~li~~~~iP~s~~~~~~ 381 (1044)
T TIGR00915 318 PQGMKYVYPYDTTPFVSASIEEV----VHTLIEAIVLVFLVMYLFLQNFRA------------TLIPTIAVPVVLLGTFA 381 (1044)
T ss_pred CCCCeEEEEEeccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHHHHHHHH
Confidence 456666655443 345555543 344566777666666677777653 77888899999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh--ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~ 278 (811)
++.++|.++|. ++.....+.+|+.|||++++++++++. .++.++.+++.++.++.+++++.|++|++++|+...+.+
T Consensus 382 ~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~ 460 (1044)
T TIGR00915 382 VLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1044)
T ss_pred HHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 677777888999999999999998764 457899999999999999999999999999999887653
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHH---HH
Q 003551 279 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MK 352 (811)
Q Consensus 279 ---~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 352 (811)
.+.++.|++..+.+++++++.++|+.|+++.+..+...+.+.+ .. + .+...++.++ +.
T Consensus 461 G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~~---------~~----~---~~~~~~~~~~~~~l~ 524 (1044)
T TIGR00915 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEHH---------EF----K---GGFFGWFNRMFDRST 524 (1044)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---------cc----c---chHHHHHHHHHHHHH
Confidence 4668999999999999999999999999987654322110000 00 0 0000112221 22
Q ss_pred hhcccccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccCC--C
Q 003551 353 EVHATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRIG--P 417 (811)
Q Consensus 353 ~~y~~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~~--~ 417 (811)
+.|.+++.+- ..|..++++++++++++++...+++.++-|.. .+|+++.+.+. .+.+++++... +
T Consensus 525 ~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~ 604 (1044)
T TIGR00915 525 HGYENGVGKILKRRGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKA 604 (1044)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3445544331 12334445555666677776777777665442 67888766543 44555555322 2
Q ss_pred CEEEEEe--cCCCC--hhhhhhhhhhccc---c-----cCccchHHHHHHh-ccCCCCcc--ccCC----------Cccc
Q 003551 418 PLYFVVK--NYNYS--SESRQTNQLCSIS---Q-----CDSNSLLNEISRA-SLIPQSSY--IAKP----------AASW 472 (811)
Q Consensus 418 pv~ivv~--~~~~~--~~~~~~~~~~~~~---~-----~~~~sl~~~i~~~-~~~~~~~~--i~~~----------~~~w 472 (811)
.+.-+.. +.+.. .++.....+ ... . -+.+++.+++.+. .+.|+... +..+ ...-
T Consensus 605 ~v~~~~~~~G~~~~~~~~~~~~~~v-~l~~~~~r~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~g~~~~i~i~ 683 (1044)
T TIGR00915 605 NVESVFTVNGFSFAGRGQNSGMAFI-RLKDWEERTGKENSVFAIAGRATGHFSQIKDAMVIAFNPPAILELGNATGFDFF 683 (1044)
T ss_pred CeeEEEEEecccCCCCCcceEEEEE-EecCHHhCCCccCCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEE
Confidence 3332221 11100 000000000 000 0 0112333333321 12222110 0000 0000
Q ss_pred H-----HHHH---hhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhh
Q 003551 473 L-----DDFL---VWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEK 544 (811)
Q Consensus 473 l-----~d~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~ 544 (811)
+ +|+. ++.+. ...-.+. ..+. ...+ +...... .+.+--+........--+.++..+.
T Consensus 684 l~g~~G~d~~~L~~~a~~-l~~~l~~-~pg~-~~v~----------~~~~~~~--~~~~i~~d~~k~~~~Gls~~~v~~~ 748 (1044)
T TIGR00915 684 LQDRAGLGHEALMQARNQ-LLGLAAQ-NPAL-TRVR----------PNGLEDE--PQFKLNIDDEKAQALGVSIADINTT 748 (1044)
T ss_pred EEeCCCCCHHHHHHHHHH-HHHHHhc-CCCe-EEee----------ccccCCC--ceEEEEECHHHHHHcCCCHHHHHHH
Confidence 0 0000 00000 0000000 0000 0000 0000000 0000000000000000112233333
Q ss_pred hHHHHccCCCcccccCCCCCcc----------cc------cccCCCCCCeEEE---------------EEEE---e--ec
Q 003551 545 LPWFLNALPSASCAKGGHGAYT----------NS------VDLKGYENGIVQA---------------SSFR---T--YH 588 (811)
Q Consensus 545 l~~~l~~~p~~~~~~gg~~~y~----------~~------v~~~~~~~~~i~~---------------sr~~---~--~~ 588 (811)
+...+...+-.....++. .|. .+ +.+...+...+.- .|.. . ..
T Consensus 749 l~~~~~g~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~l~~l~i~~~~g~~vpL~~va~v~~~~~~~~i~r~n~~~~i~v~ 827 (1044)
T TIGR00915 749 LSTAWGSSYVNDFIDRGR-VKRVYVQAEPDARMSPEDINKWYVRNASGEMVPFSAFATGRWEYGSPKLERYNGLPSMEIL 827 (1044)
T ss_pred HHHHhCCceeEEEEeCCE-EEEEEEEeChhHcCCHHHHhceEeECCCCCEEEhhheEEEEEccCccceeecCCceEEEEE
Confidence 322221111000000000 000 00 0000000000100 0100 0 00
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 003551 589 TPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIIL 668 (811)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~ 668 (811)
.......+..+.+++++++.++++ .|+++...|. .++......+....+++|++++|+++.++|+|++.+++++
T Consensus 828 ~~~~~~~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~lvl~~~F~S~~~pliI~ 901 (1044)
T TIGR00915 828 GSAAPGVSTGEAMAAMEAIAQKLP--PGFGFSWTGM----SYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPVSVM 901 (1044)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCC--CCceEeeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 001111122334444444443332 2333322221 1233334456667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhc---cCCCHHHHHHHHHHHhhHHHHHHHHHHH
Q 003551 669 LVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV---SSGDKNQRMKEALGTMGASVFSGITLTK 745 (811)
Q Consensus 669 ~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~---~~~~~~~~~~~al~~~g~pv~~~~~ltt 745 (811)
++++++++|++..++++|.+||.++++++++++|+.||++|++...+.+ ++.+.++|+.+|.+++.+||++|+ +||
T Consensus 902 ~~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTt-ltt 980 (1044)
T TIGR00915 902 LVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTS-LAF 980 (1044)
T ss_pred HHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999865542 345899999999999999999996 899
Q ss_pred HHHHHHhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccchhhcccCCC
Q 003551 746 LVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPS 807 (811)
Q Consensus 746 ~~g~~~L~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~~~~~~~~~~~~ 807 (811)
++|++||+++.+. +++.+ ...+++.+++|++.+|+++|++|.++.+. .+.+++.++|+
T Consensus 981 i~gllPla~~~g~g~~~~~pl-ai~vigGL~~st~ltL~vvP~ly~~~~~~---~~~~~~~~~~~ 1041 (1044)
T TIGR00915 981 ILGVVPLAISTGAGSGSQHAI-GTGVFGGMVTATVLAIFFVPLFYVVVRRL---FKRKSTKKEPS 1041 (1044)
T ss_pred HHHHHHHHHhcCCChHHhCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcccCCCCCC
Confidence 9999999998643 34444 23344556888999999999999998653 33334444444
No 13
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=100.00 E-value=3.9e-32 Score=334.15 Aligned_cols=610 Identities=13% Similarity=0.148 Sum_probs=345.9
Q ss_pred CCCeEEEEec--cccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSS--ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~--~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++.... ...+++.++... ..+.++++++++.+.+++++++. ++...+++++|++.+++
T Consensus 321 P~g~~~~~~~d~~~~i~~~i~~~~----~~l~~~~~lv~~vl~lfl~~~r~------------~~i~~~~ip~s~~~~~~ 384 (1040)
T PRK10503 321 PKSVKVTVLSDRTTNIRASVDDTQ----FELMLAIALVVMIIYLFLRNIPA------------TIIPGVAVPLSLIGTFA 384 (1040)
T ss_pred CCCcEEEEEecCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcchHH------------HHHHHhhhHHHHHHHHH
Confidence 3555555444 445566665543 33455565555555566676643 77888999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 279 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~ 279 (811)
++.++|+++|. ++.....+++|+.|||++++++++++. +++.++.+++.++.++.+.+++.+++|++++|+...+++-
T Consensus 385 ~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~g 463 (1040)
T PRK10503 385 VMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463 (1040)
T ss_pred HHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999997 666777788899999999999998774 5677889999999999999999999999999998877654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcc
Q 003551 280 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 356 (811)
Q Consensus 280 ---~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 356 (811)
..++.|++..++++++++++++|+.|++++...++.+.++.+ . ..+..++++++ +++.|.
T Consensus 464 ~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~---------~-------~~~~~~~~~~~-l~~~y~ 526 (1040)
T PRK10503 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQN---------R-------FSRASERMFDR-VIAAYG 526 (1040)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc---------h-------HHHHHHHHHHH-HHHHHH
Confidence 668999999999999999999999999887544321100000 0 00000111222 233444
Q ss_pred cccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccCCCCEEEEE
Q 003551 357 TILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRIGPPLYFVV 423 (811)
Q Consensus 357 ~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~~~pv~ivv 423 (811)
+++.+- .+|+.++++++++++++++....++.++-|.. .+|+++.+.+. .+.+++.+...+.+.-+.
T Consensus 527 ~~l~~~l~~~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~ 606 (1040)
T PRK10503 527 RGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLT 606 (1040)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 444331 12344555555666777776677776665432 55777665443 445555554334443222
Q ss_pred e--cCCCChh--hhhhhhhh--ccccc--CccchHHHHHHh-ccCCCCccccCCCc-------------------ccHHH
Q 003551 424 K--NYNYSSE--SRQTNQLC--SISQC--DSNSLLNEISRA-SLIPQSSYIAKPAA-------------------SWLDD 475 (811)
Q Consensus 424 ~--~~~~~~~--~~~~~~~~--~~~~~--~~~sl~~~i~~~-~~~~~~~~i~~~~~-------------------~wl~d 475 (811)
. +.+..++ +..+..+- ..... ...++.+++++. ++.|+......+.. .-.++
T Consensus 607 ~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~~~~~~~~~~v~i~l~G~d~~~ 686 (1040)
T PRK10503 607 SFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLTIDTQVSRTQYQFTLQATSLDA 686 (1040)
T ss_pred EEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCccccccCCCCCCCeEEEEECCCHHH
Confidence 1 1000000 00000000 00000 113344444432 22332211000000 00001
Q ss_pred HHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhhHHHHccCCCc
Q 003551 476 FLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSA 555 (811)
Q Consensus 476 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~ 555 (811)
..++.+.-. ...+ ...+.. .. .+.+.... ++..--+........--+.++..+.+...+...+..
T Consensus 687 L~~~a~~l~-~~l~-~~pgv~-~v----------~~~~~~~~--~e~~v~id~~k~~~~Gls~~~v~~~l~~~~~g~~~~ 751 (1040)
T PRK10503 687 LSTWVPKLM-EKLQ-QLPQLS-DV----------SSDWQDKG--LVAYVNVDRDSASRLGISMADVDNALYNAFGQRLIS 751 (1040)
T ss_pred HHHHHHHHH-HHHh-cCCCeE-EE----------EccccCCC--ceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceee
Confidence 111100000 0000 000000 00 00000000 000000000000000012233333333322221110
Q ss_pred ccccCCCCCcccccc----------------cCCCCCCeE---------------EEEEEE-----eeccCCCChhHHHH
Q 003551 556 SCAKGGHGAYTNSVD----------------LKGYENGIV---------------QASSFR-----TYHTPLNRQIDYVN 599 (811)
Q Consensus 556 ~~~~gg~~~y~~~v~----------------~~~~~~~~i---------------~~sr~~-----~~~~~~~~~~~~~~ 599 (811)
....++ ..|.-.+. +...+...+ ...|.. ....+.....+..+
T Consensus 752 ~~~~~~-~~~~I~v~~~~~~~~~~~~L~~l~i~~~~G~~v~L~~vA~i~~~~~~~~I~r~n~~~~v~v~~~~~~g~~~~~ 830 (1040)
T PRK10503 752 TIYTQA-NQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGD 830 (1040)
T ss_pred EEEECC-EEEEEEEEeChhHhCCHHHHccEEEECCCCCEEEhhheEEEEEcCCcccEEeeCCeEEEEEEEEeCCCCCHHH
Confidence 000000 00000000 000000000 001110 00001111112334
Q ss_pred HHHHHHHHHHHhhhhcCcccccccceeeehhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 003551 600 SMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQ---YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVV 676 (811)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~ 676 (811)
.++++++..++++ .|.|..+.+.++ ..+...++..+++++++++++++..+|+|++.+++++++++++++
T Consensus 831 ~~~~i~~~~~~~~-------lP~g~~~~~~g~~~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~~~pliI~~tIPls~~ 903 (1040)
T PRK10503 831 AVQAIMDTEKTLN-------LPADITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGV 903 (1040)
T ss_pred HHHHHHHHHHhcC-------CCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 4444444443321 233433434333 334556777889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHh----hccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 003551 677 DLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF----SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 752 (811)
Q Consensus 677 ~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f----~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L 752 (811)
|++..|+++|.+||.++++++++++|+.||++|-+.... ++++.+++||+.+|.+++.+||++|+ +||++|++||
T Consensus 904 G~~~~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTt-ltti~gllPl 982 (1040)
T PRK10503 904 GALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT-LAALLGALPL 982 (1040)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999887432 22345899999999999999999996 8999999999
Q ss_pred hccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003551 753 CFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 753 ~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~ 791 (811)
+++.+. +++.+ ...+++.+++|++.+|+++|++|.++.
T Consensus 983 al~~G~g~e~~~pl-a~~ii~GL~~St~ltL~vvP~ly~~~~ 1023 (1040)
T PRK10503 983 MLSTGVGAELRRPL-GICMVGGLIVSQVLTLFTTPVIYLLFD 1023 (1040)
T ss_pred HHhcCCChHHhCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998653 44444 334445678889999999999999984
No 14
>PRK09579 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.3e-32 Score=330.64 Aligned_cols=604 Identities=15% Similarity=0.154 Sum_probs=341.5
Q ss_pred CCCeEEEEecc--ccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSE--SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~--~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++...++ ..+++.+++... .+..+++++++.+.+.++++|+ ++...++++++++.+++
T Consensus 311 P~g~~~~~~~d~~~~i~~~~~~~~~----~l~~~~ilv~lvl~lfl~~~r~------------~l~~~~~IP~s~~~~~~ 374 (1017)
T PRK09579 311 PPNLKVSIAYDATLFIQASIDEVVK----TLGEAVLIVIVVVFLFLGALRS------------VLIPVVTIPLSMIGVLF 374 (1017)
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence 45666655544 345555555432 3445555555555556666543 67778899999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHH-hccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC-
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~- 278 (811)
++.++|.++|. ++.....+++|+.|||++++++++++ .+++.++.+++.++.++.+.|++.|++|++++|+...+.+
T Consensus 375 ~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~g 453 (1017)
T PRK09579 375 FMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTG 453 (1017)
T ss_pred HHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999997 66777778899999999999999877 4578899999999999999999999999999999876643
Q ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcc
Q 003551 279 M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 356 (811)
Q Consensus 279 ~--~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 356 (811)
. +.++.|++..+.+++++++.++|+.|++++...++.++.+ . ..+..+..+++ +++.|.
T Consensus 454 ~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~~~~~~~-~-----------------~~~~~~~~~~~-l~~~Y~ 514 (1017)
T PRK09579 454 LTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHEENPS-G-----------------LAHRLDRLFER-LKQRYQ 514 (1017)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-h-----------------hhHHHHHHHHH-HHHHHH
Confidence 2 5689999999999999999999999999887643221000 0 00000111211 223344
Q ss_pred cccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccCCCCEEEEE
Q 003551 357 TILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRIGPPLYFVV 423 (811)
Q Consensus 357 ~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~~~pv~ivv 423 (811)
+++.+- ..|..++++++++++++.+....++.++-|.. .+|+++.+.+. .+.+++.+...+.+.-+.
T Consensus 515 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~~~ 594 (1017)
T PRK09579 515 RALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSF 594 (1017)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHhCCcCcCCccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 333321 01233344444555556555566666665542 67788765543 444555554334432222
Q ss_pred e--cCCCChhhhhhhhhhcc--cccCccchHHHHHHh-ccCCCCcc--cc-----C-----CCcc------cHH------
Q 003551 424 K--NYNYSSESRQTNQLCSI--SQCDSNSLLNEISRA-SLIPQSSY--IA-----K-----PAAS------WLD------ 474 (811)
Q Consensus 424 ~--~~~~~~~~~~~~~~~~~--~~~~~~sl~~~i~~~-~~~~~~~~--i~-----~-----~~~~------wl~------ 474 (811)
. +.+..++......+-.. .....+++.+++.+. .+.|+... .. . +..- -++
T Consensus 595 ~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a 674 (1017)
T PRK09579 595 QINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEGLPFQFVINTANDYESLLQVA 674 (1017)
T ss_pred EEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Confidence 1 10000000000000000 000112344444332 22333220 00 0 0000 011
Q ss_pred -HHHhhhCcCcccccccCCC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhhHHHHccC
Q 003551 475 -DFLVWISPEAFGCCRKFTN-GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNAL 552 (811)
Q Consensus 475 -d~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~ 552 (811)
+....++.... ..+ ........++.-.-+++......++ +.++..+.+...+...
T Consensus 675 ~~l~~~l~~~~g-----~~~v~~~~~~~~~el~i~vd~~ka~~~Gl------------------s~~~i~~~l~~~~~G~ 731 (1017)
T PRK09579 675 QRVKQRAQESGK-----FAFLDIDLAFDKPEVVVDIDRAKAAQMGV------------------SMQDLGGTLATLLGEG 731 (1017)
T ss_pred HHHHHHHHcCCC-----cEEeeccccCCCceEEEEECHHHHHHcCC------------------CHHHHHHHHHHHhCCc
Confidence 11111111000 000 0000000000000011111111111 1112222222111110
Q ss_pred CCcc-------------------------------cccCCCCCcccccccCC-CCCCeEEE---EE-EEeeccCCCChhH
Q 003551 553 PSAS-------------------------------CAKGGHGAYTNSVDLKG-YENGIVQA---SS-FRTYHTPLNRQID 596 (811)
Q Consensus 553 p~~~-------------------------------~~~gg~~~y~~~v~~~~-~~~~~i~~---sr-~~~~~~~~~~~~~ 596 (811)
+-.. -+.|..-+.++-.+++. .....|.. .| ..+.-.+ ..+
T Consensus 732 ~~~~~~~~~~~~~I~v~~~~~~r~~~~~L~~l~i~~~~G~~VpL~~va~i~~~~~p~~I~r~n~~r~i~v~~~~---~~~ 808 (1017)
T PRK09579 732 EINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQFQQLNSAIISGFP---IVS 808 (1017)
T ss_pred eeeEEEeCCEEEEEEEEcChhHhCCHHHHhceEeECCCCCEEEhhHcEEEEEcCCCceEEEeCCeeEEEEEeeC---CCC
Confidence 0000 00111111111111110 00011110 00 0011011 112
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccccccceeeeh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 003551 597 YVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYF---EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 673 (811)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~ 673 (811)
..+.++.+++..++. .|.|..+.+. ++..+...++...++++++++++++.++|+|++.++++++++++
T Consensus 809 ~~~~~~~i~~~~~~~--------lP~g~~~~~~G~~~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~~pliI~~~iPl 880 (1017)
T PRK09579 809 MGEAIETVQQIAREE--------APEGFAFDYAGASRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPL 880 (1017)
T ss_pred HHHHHHHHHHHHHhh--------CCCCcEEEeechHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233444444443321 2333333332 33323346788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHh---hcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003551 674 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGV 749 (811)
Q Consensus 674 ~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f---~~~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~ 749 (811)
+++|++..+++.|.++|.++++++++.+|+.|+++|.+...+ +++ +.+.++|+.+|.+++.+||++|+ +||++|+
T Consensus 881 a~~G~~~~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt-lTti~gl 959 (1017)
T PRK09579 881 SICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT-AAMVFGM 959 (1017)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999776543 333 44899999999999999999996 8999999
Q ss_pred HHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccc
Q 003551 750 IVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML 798 (811)
Q Consensus 750 ~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~~~ 798 (811)
+||++..+.. .+.+ ...+++.++++.+.+|+++|++|.++.++.+...
T Consensus 960 lPla~~~g~g~~~~~pl-A~~iigGL~~st~ltL~~iP~ly~l~~~~~~~~~ 1010 (1017)
T PRK09579 960 VPLILATGAGAVSRFDI-GLVIATGMSIGTLFTLFVLPCIYTLLAKPDAAPG 1010 (1017)
T ss_pred HHHHHhcCCChHHhCCc-eeeeehHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 9999986442 2222 2233455688899999999999999987665433
No 15
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=100.00 E-value=1e-32 Score=342.67 Aligned_cols=604 Identities=15% Similarity=0.200 Sum_probs=347.0
Q ss_pred CCCe--EEEEeccccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNL--TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~--~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++ ++.+.....+++.++.... .+..+.+++++.+.+++|++|. ++...+++++|++.++.
T Consensus 311 p~~~~~~~~~d~s~~i~~~i~~l~~----~~~~g~~lv~~vl~lfl~~~r~------------~liv~~~IPisi~~t~~ 374 (1021)
T PF00873_consen 311 PEGLEITIVYDQSEYIEESINNLIS----NLLIGIILVVLVLLLFLRNWRS------------ALIVALSIPISILGTFI 374 (1021)
T ss_dssp STTEEEEEEEESHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSHHH------------HHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEechHHHHHHHHHHHH----HHHHHhHhhhhhhhhhhcchHH------------HHHHHHHHHHHHHHHHH
Confidence 3455 5556665667777776543 3556666665556666787754 78888999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHH-hcc-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~ 278 (811)
+|.++|+++|. ++.....+.+|+-|||++++++++++ ..+ +.++.++..++.++++.|++.+++|++++|+...+.+
T Consensus 375 ~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~~ 453 (1021)
T PF00873_consen 375 FMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFMP 453 (1021)
T ss_dssp HHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSB
T ss_pred HHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999997 67777778888889999999999866 445 8999999999999999999999999999999887765
Q ss_pred C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhc
Q 003551 279 M---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 355 (811)
Q Consensus 279 ~---~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 355 (811)
- ..++.|++..+++++++++.++|+.|++.....++.+.++...+ .++......++++.|
T Consensus 454 G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 454 GIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRF-----------------FSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCH-----------------HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccc-----------------cccccccccccccch
Confidence 3 33899999999999999999999999998776554432221000 000111222234445
Q ss_pred ccccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccCCCCEEEE
Q 003551 356 ATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRIGPPLYFV 422 (811)
Q Consensus 356 ~~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~~~pv~iv 422 (811)
.+++.+. ..|..++++++++++++++...+++.++-|.. .+|+++.+.+. .+.+++.+...+.+.-+
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v 596 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSV 596 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 5544431 12344555666777778888888877665543 66788766553 45566666655655433
Q ss_pred Eec--CCCChhhhhhh---hhhccc--------ccCccchHHHHHHh-ccCCCCccccCCCcccHHHHHhhhCcCccccc
Q 003551 423 VKN--YNYSSESRQTN---QLCSIS--------QCDSNSLLNEISRA-SLIPQSSYIAKPAASWLDDFLVWISPEAFGCC 488 (811)
Q Consensus 423 v~~--~~~~~~~~~~~---~~~~~~--------~~~~~sl~~~i~~~-~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~ 488 (811)
... .+........+ ...... .-...++.+++++. .+.++.... +... . -..
T Consensus 597 ~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~------~~~~-~-~~~------- 661 (1021)
T PF00873_consen 597 SSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVF------VFSP-P-DLR------- 661 (1021)
T ss_dssp EEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEE------EEEH-C-SSC-------
T ss_pred ceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCccee------cccc-c-ccc-------
Confidence 331 11100000000 000000 00112333333322 111111100 0000 0 000
Q ss_pred ccCCCCCCCCCCCCCCC-CCCCCCCCCCCCcc----CCCC-----cccccCCCCCC------CC----------ChhhHH
Q 003551 489 RKFTNGSYCPPDDQPPC-CPSGQSSCGSAGVC----KDCT-----TCFHHSDLLKD------RP----------STIQFK 542 (811)
Q Consensus 489 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~------~p----------~~~~f~ 542 (811)
.. ...+..+.+.. ...+.+........ +.+. ...+ .++..+ .| +.++..
T Consensus 662 ---~~-~~~~g~~~~i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~-~~~~~~~~el~i~~dreka~~~Gls~~~va 736 (1021)
T PF00873_consen 662 ---GL-GSGPGSSAPIQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVR-DDWEDGQPELRIDPDREKAARLGLSPADVA 736 (1021)
T ss_dssp ---CC-CSSSSEEEEEEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEE-ESSSSBEEEEEEEE-HHHHHHTTB-HHHHH
T ss_pred ---cc-ccccccceeeeeccCCCCHHHHHHHHHHHHHHHHhCCCccccc-ccccccCcceEEEecHHHHHHcCCCHHHHH
Confidence 00 00000000000 00000000000000 0000 0000 000000 01 122233
Q ss_pred hhhHHHHccCCCcccccCCC---------CCcccccc------cCCCCCC-eEE--------EEE--EEeeccC------
Q 003551 543 EKLPWFLNALPSASCAKGGH---------GAYTNSVD------LKGYENG-IVQ--------ASS--FRTYHTP------ 590 (811)
Q Consensus 543 ~~l~~~l~~~p~~~~~~gg~---------~~y~~~v~------~~~~~~~-~i~--------~sr--~~~~~~~------ 590 (811)
+.+...++...-.....|+. ..+..+.+ +. ..++ .+. ... -.++|.+
T Consensus 737 ~~l~~a~~G~~v~~~~~~~~~~~I~vr~~~~~r~~~~~L~~l~i~-~~~G~~VpL~~la~i~~~~~~~~I~r~n~~r~it 815 (1021)
T PF00873_consen 737 RTLRTAFSGSVVGTFREGGEEIDIRVRLPEEDRQSLEDLENLPIP-TPDGRSVPLSQLATIEETQGPSQIRRENGQRTIT 815 (1021)
T ss_dssp HHHHHHHS-EEEEEEEETTEEEEEEEEE-GGGSSSGGGGCT-EEE-ETTSEEEEGGGTEEEEEEEE-SEEEEETTCEEEE
T ss_pred HHHHHHhcccccceeeeCCeEEEEEEecchhhccChhhhcceEEE-eeccccccHHHHhccccccccceEecccCceeee
Confidence 33333332211000011110 00000000 00 0011 010 000 0011111
Q ss_pred ----CCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeeh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 003551 591 ----LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYF---EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWS 663 (811)
Q Consensus 591 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~ 663 (811)
..+....-+..+..++..++++ .|.|..+.+. ++..+...++...+++|+++|++++.++|+|++.
T Consensus 816 V~a~~~~~~~~~~v~~~~~~~~~~~~-------lp~g~~~~~~G~~~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~ 888 (1021)
T PF00873_consen 816 VSADVAGGDSLGEVSEAVKELLKELQ-------LPPGYTIEFGGEAEEMQESFSSLGFALILALLLIYLILAAQFESFRQ 888 (1021)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHTTT--------SSTTEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSST
T ss_pred eccccccCccchhHHHHHHhhhcccc-------CCCCCcccCCchHHHHHhhhcchhhhHHHHHHHHHHHHHHHhcceee
Confidence 1111111122233333333221 3444444443 4455666788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhh---c-cCCCHHHHHHHHHHHhhHHHHH
Q 003551 664 SAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---V-SSGDKNQRMKEALGTMGASVFS 739 (811)
Q Consensus 664 ~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~---~-~~~~~~~~~~~al~~~g~pv~~ 739 (811)
+++++++++++++|++..+++.|.++|..+++++++.+|++|.++|-+...+. + ++.+.+||+.+|.+++.|||++
T Consensus 889 PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlm 968 (1021)
T PF00873_consen 889 PLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILM 968 (1021)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccchhhHHHHHHHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875443 3 2337889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003551 740 GITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 790 (811)
Q Consensus 740 ~~~ltt~~g~~~L~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~ 790 (811)
|+ +||++|++||+++.+. +.+.+ ...+++.+++|.+.+|+++|++|.++
T Consensus 969 Tt-lTti~G~lPla~~~g~g~~~~~pl-a~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 969 TT-LTTILGMLPLALGIGEGAEFWQPL-AIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp HH-HHHHHHHHHHHTT-STTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hhhhccccccccccCCCccccCch-hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 96 8999999999998753 44444 23344556788899999999999986
No 16
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.5e-32 Score=330.05 Aligned_cols=629 Identities=15% Similarity=0.169 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCccccccccee
Q 003551 103 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVL 182 (811)
Q Consensus 103 ~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~ 182 (811)
.+.-++..+.+++......++-++++.|+....++..+++.. ..+..+.+++++.+.++++++|+
T Consensus 291 v~v~~~V~~~l~~l~~~lP~gv~~~~~~D~t~~V~~si~~v~----~tL~~a~~lVv~Vi~lFL~~~ra----------- 355 (1009)
T COG0841 291 LDTAKAVKAKLAELQANLPQGVDIAIPYDTTEFIKASIEEVI----KTLFEAIVLVVLVMYLFLGNLRA----------- 355 (1009)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEecCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhcce-----------
Confidence 344444444444332211123445666777677777777754 35666666666666677788764
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHH-hccCCCHHHHHHHHHHhhhhHHH
Q 003551 183 LGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVGPSIT 261 (811)
Q Consensus 183 l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~si~ 261 (811)
++++.+++++|++.+|++|.++|+++|. ++.....|.+|+-|||+++++++..| .+ +.++.++..++++|++.|++
T Consensus 356 -tlI~~iaiPlsLlgtf~~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~-G~~p~~Aa~~a~~ei~~~vi 432 (1009)
T COG0841 356 -TLIPALAVPVSLLGTFAVMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMR-GLPPREAAEKAMGEIGGAVI 432 (1009)
T ss_pred -eEEeeeechHHHHHHHHHHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecC-CCCHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999997 77888889999999999999999876 45 99999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCC
Q 003551 262 LASLSEVLAFAVGSFI-PMPA--CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 338 (811)
Q Consensus 262 ~tslt~~~~F~~~~~~-~~~~--~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~ 338 (811)
.+|+|.+++|+...+. .+.+ +|+|++..+++++++++.++|+.|++-+...|+.+... ....
T Consensus 433 a~TlvliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~-------------- 497 (1009)
T COG0841 433 AITLVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFG-------------- 497 (1009)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhh--------------
Confidence 9999999999976554 4443 89999999999999999999999999887765543211 0000
Q ss_pred CCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhh---hH
Q 003551 339 IGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YF 406 (811)
Q Consensus 339 ~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~---~~ 406 (811)
+..+..+.+.+++++.+...+.| ++.++++++++++.+.++...++.+|-|.+ .+|+++.+.+ ..
T Consensus 498 ~~~~~~~~~~~~Y~~~l~~~L~~---~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~ 574 (1009)
T COG0841 498 WFNRFFDRLEDRYQRGLRWVLRR---RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVV 574 (1009)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHH
Confidence 00011233344444444444444 556677778888889999999999887765 6788875544 34
Q ss_pred HHHHhhccC--CCCEEEEEecCCCCh-hhhhhhhhhcccc------cCccchHHHHHHh-ccCCCC-ccccCCCc-----
Q 003551 407 NNISEHLRI--GPPLYFVVKNYNYSS-ESRQTNQLCSISQ------CDSNSLLNEISRA-SLIPQS-SYIAKPAA----- 470 (811)
Q Consensus 407 ~~~~~~~~~--~~pv~ivv~~~~~~~-~~~~~~~~~~~~~------~~~~sl~~~i~~~-~~~~~~-~~i~~~~~----- 470 (811)
+.+++++.. .+.+.-+..-..... .......+...+. .+..+..+++.+. .+.++. .+...+..
T Consensus 575 ~~ve~~~~~~~~~~v~~v~~~~G~g~~~~~~~~~~~~Lk~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 654 (1009)
T COG0841 575 RQVEDWLLILEKPEVESVFTVVGFGSGQNNAGRAFVSLKPWSERKENSAQAIIARLTKELAKIPDATVFAFTPPAVDGLG 654 (1009)
T ss_pred HHHHHHHHhccCCCeeEEEEEeccCCCCCCcceEEEecCChhhcccccHHHHHHHHHHHhhcCCccceeccCCCccccCC
Confidence 455655321 244433332111100 0000000000000 0111222222211 111110 00000000
Q ss_pred -------------ccHHHHHhhhCcCcccccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCC
Q 003551 471 -------------SWLDDFLVWISPEAFGCCRKFTNG-SYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRP 536 (811)
Q Consensus 471 -------------~wl~d~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 536 (811)
.-.+...+|.++... +...+. .....+ +..... ....-....+...---
T Consensus 655 ~~~~~~~~~~~~g~d~~~l~~~a~~~~~---~~~~~p~~~v~~~------------~~~~~p--~l~i~iDr~ka~~lGv 717 (1009)
T COG0841 655 QGSGFPFQLRDRGGDLEALRQAANQLLE---KANQSPLLNVRSD------------LLPDTP--QLQVDIDRDKAAALGV 717 (1009)
T ss_pred CCCCccEEEEEeCCCHHHHHHHHHHHHH---HHhhCCCccccCC------------CCCCCc--eEEEEeCHHHHHHcCC
Confidence 000111111110000 000000 000000 000000 0000000000000000
Q ss_pred ChhhHHhhhHHHHccCCCcccccCC-------------------------------CCCcccccccCCCCCCeEEEEEEE
Q 003551 537 STIQFKEKLPWFLNALPSASCAKGG-------------------------------HGAYTNSVDLKGYENGIVQASSFR 585 (811)
Q Consensus 537 ~~~~f~~~l~~~l~~~p~~~~~~gg-------------------------------~~~y~~~v~~~~~~~~~i~~sr~~ 585 (811)
+.++..+.|...+...+-.....++ ..+.++-.++. ...+.-...|+.
T Consensus 718 s~~~I~~tL~~~~~g~~v~~~~~~~~~~~V~~~~~~~~R~~~~~l~~l~v~~~~G~~vpLs~va~~~-~~~~p~~i~r~n 796 (1009)
T COG0841 718 SLQDIAQTLQSALGGTYVNDFRDDGRVYKVVVQADAEFRSDPEDLGKLYVRSADGAMVPLSAFATIR-WEYGPPRIVRYN 796 (1009)
T ss_pred CHHHHHHHHHHHhCCCeeeeEecCCcEEEEEEEcChhhcCCHHHHhceEEecCCCCEEechheEEEE-EecCCCeEEeeC
Confidence 1122223333222221100000011 00011100000 000000011110
Q ss_pred ---ee--ccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003551 586 ---TY--HTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 660 (811)
Q Consensus 586 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s 660 (811)
.. ..+.......-+++++++++..+...+.|+.....|. .+++.+...+....+++|+++||+++..+|+|
T Consensus 797 ~~~svti~~~~~~g~s~g~a~~~v~~~~~~~~lp~g~~~~~~G~----~~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS 872 (1009)
T COG0841 797 GLPSVTISGNLAPGVSSGDAMAAMEKLAAELPLPSGYTYEWSGE----SEQEKEAGGQALLLFALALLVVFLVLAAQYES 872 (1009)
T ss_pred CceEEEEEEecCCCCCHHHHHHHHHHHHhccCCCCceEEEecch----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0011111122345555555444332112333222222 35566677788889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHh---hccCCCHHHHHHHHHHHhhHHH
Q 003551 661 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASV 737 (811)
Q Consensus 661 ~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f---~~~~~~~~~~~~~al~~~g~pv 737 (811)
+..++++++++++.++|++..+.+.|.++|..+++++++.+|+.+.++|-+.... ++++.+++||+.+|.+.+.|||
T Consensus 873 ~~~P~~Il~tvPla~iGa~~~L~l~g~~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPI 952 (1009)
T COG0841 873 FSIPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPI 952 (1009)
T ss_pred hhhhhHHHhhhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999776322 2344599999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003551 738 FSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 738 ~~~~~ltt~~g~~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~ 791 (811)
++|+ +++++|++||+++.+.. -+.. ...+++.++++.+.+|+++|++|.++.
T Consensus 953 lMTt-la~ilG~iPLal~~g~Ga~~r~~l-gi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 953 LMTS-LAAILGVLPLALSTGAGAESRQPL-GIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred HHHH-HHHHHhhhhhhhcccccccccCcc-eEEEechhHHHHHHHHhhhhhhheeee
Confidence 9997 79999999999988642 1222 122334568889999999999999875
No 17
>PRK09577 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.5e-31 Score=325.03 Aligned_cols=615 Identities=13% Similarity=0.114 Sum_probs=339.6
Q ss_pred CCCeEEEEeccc--cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~--s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++...++. .+++.++.... .+.++++++++.+.+.+++++. ++..+++++++++.+++
T Consensus 317 P~g~~~~~~~d~~~~i~~~i~~~~~----~l~~~~ilv~lvl~l~l~s~r~------------~liv~~~iP~s~~~~~~ 380 (1032)
T PRK09577 317 PPGVKYQIPYETSSFVRVSMNKVVT----TLIEAGVLVFLVMFLFMQNFRA------------TLIPTLVVPVALLGTFG 380 (1032)
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHHHHHHHH
Confidence 456666655444 34555555432 3456666666666666777653 77888999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh--ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~ 278 (811)
++.++|+++|. ++.....+++|+.|||++++++++++. .++.++.+++.++.++.++|++.+++|++++|+...+.+
T Consensus 381 ~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 381 VMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred HHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 778888899999999999999999874 368899999999999999999999999999999776654
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHH---HH
Q 003551 279 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MK 352 (811)
Q Consensus 279 ---~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 352 (811)
-..++.|++..+++++++++.++|+.|+++....++....+.+ . +....++.+. +.
T Consensus 460 g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~----------~--------~~~~~~~~~~~~~l~ 521 (1032)
T PRK09577 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVDGDHHE----------K--------RGFFGWFNRFVARST 521 (1032)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----------c--------chHHHHHHHHHHHHH
Confidence 3458999999999999999999999999988765432110000 0 0000111111 23
Q ss_pred hhcccccc---cccchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhh---hHHHHHhhccCCC
Q 003551 353 EVHATILS---LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHLRIGP 417 (811)
Q Consensus 353 ~~y~~~l~---~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~---~~~~~~~~~~~~~ 417 (811)
+.|.+++. +++.+.+ ++.+++++++++....+..++-|.. .+|+++.+.+ ..+.+++++...+
T Consensus 522 ~~Y~~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~ 599 (1032)
T PRK09577 522 QRYATRVGAILKRPLRWL--VVYGALTAAAALLFTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHE 599 (1032)
T ss_pred HHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCC
Confidence 33444332 2322222 2222334444444455555554332 6788876544 4455666664334
Q ss_pred CEEEEEe--cCCC-Ch-hhhhhhhhhccccc--------CccchHHHHHHh-ccCCCCccccCCCcccHH-HHHhhhCcC
Q 003551 418 PLYFVVK--NYNY-SS-ESRQTNQLCSISQC--------DSNSLLNEISRA-SLIPQSSYIAKPAASWLD-DFLVWISPE 483 (811)
Q Consensus 418 pv~ivv~--~~~~-~~-~~~~~~~~~~~~~~--------~~~sl~~~i~~~-~~~~~~~~i~~~~~~wl~-d~~~~l~~~ 483 (811)
.+.-+.. +.+. .. ++..+..+ ..... ..+++.+++.+. +..|+..... +-. .... ....
T Consensus 600 ~v~~~~~~~g~~~~~~~~~~~~~~v-~l~~~~~r~~~~~~~~~i~~~l~~~~~~~p~~~~~~-----~~~~~~~~-~g~~ 672 (1032)
T PRK09577 600 PVAYTFALGGFNLYGEGPNGGMIFV-TLKDWKERKAARDHVQAIVARINERFAGTPNTTVFA-----MNSPALPD-LGST 672 (1032)
T ss_pred CceEEEEEeccCCCCCCcceEEEEE-EecChhhccccccCHHHHHHHHHHHhccCCCceEEe-----eccccccC-CCCC
Confidence 4332221 1010 00 00000000 00000 012223333221 1122211000 000 0000 0000
Q ss_pred cccccccCCCCCCCCCCCCC-CCCC---CC---CCCCCCCCccCCCCc-----ccccC--CCCCCCCChhhHHhhhHHHH
Q 003551 484 AFGCCRKFTNGSYCPPDDQP-PCCP---SG---QSSCGSAGVCKDCTT-----CFHHS--DLLKDRPSTIQFKEKLPWFL 549 (811)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~---~~~~~~~~~~~~~~~-----~~~~~--~~~~~~p~~~~f~~~l~~~l 549 (811)
.....+...++. ++.+ .... +. +......++..+-.. -+... .....--+.++..+.+...+
T Consensus 673 ~~i~i~i~g~~~----~d~~~l~~~a~~l~~~l~~~~g~~~v~~~~~~~~~~~~i~~d~~~a~~~Gls~~~i~~~l~~~~ 748 (1032)
T PRK09577 673 SGFDFRLQDRGG----LGYAAFVAAREQLLAEGAKDPALTDLMFAGTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMF 748 (1032)
T ss_pred CcEEEEEEcCCC----CCHHHHHHHHHHHHHHHhcCCCeEEeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHh
Confidence 000000000000 0000 0000 00 000000000000000 00000 00000011223333333222
Q ss_pred ccCCCcccccCCCCCcccc----------------cccCCCCCCeEE---------------EEEE------EeeccCCC
Q 003551 550 NALPSASCAKGGHGAYTNS----------------VDLKGYENGIVQ---------------ASSF------RTYHTPLN 592 (811)
Q Consensus 550 ~~~p~~~~~~gg~~~y~~~----------------v~~~~~~~~~i~---------------~sr~------~~~~~~~~ 592 (811)
...+-.....|+. .|.-. +.+...+...+. ..|. .+.. ...
T Consensus 749 ~g~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~l~~~~i~~~~G~~vpL~~va~i~~~~~~~~I~r~n~~r~~~v~~-~~~ 826 (1032)
T PRK09577 749 GSDYIGDFMHGSQ-VRRVIVQADGRHRLDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPPQLTRYNGYPSFTING-SAA 826 (1032)
T ss_pred cCCeeeEEecCCe-EEEEEEEeChhHhCCHHHHhhEEEECCCCCEEEhhHhEEEEEccCcceEEecCCceEEEEEE-EeC
Confidence 2211000001100 00000 000000000000 0010 0000 011
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 003551 593 RQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 672 (811)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~ 672 (811)
...+..+..++++++.++++ .|++....|.. ++.......+...+++|++++++++.++|+|++.+++++++++
T Consensus 827 ~~~~~~~~~~~i~~~~~~lP--~g~~~~~~G~~----~~~~~~~~~l~~~~~~ai~li~lvl~~~F~S~~~plii~~~iP 900 (1032)
T PRK09577 827 PGHSSGEAMAAIERIAATLP--AGIGYAWSGQS----FEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVP 900 (1032)
T ss_pred CCCChHHHHHHHHHHHHhCC--CCcEEEeccHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHhh
Confidence 11122344455555444432 34443333321 2222333456667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhh---ccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003551 673 MIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGV 749 (811)
Q Consensus 673 ~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~---~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~ 749 (811)
++++|++..+++.|.+||..+++++++++|+.|+++|++..... +++.+.+||+.+|.+++.+||++|+ +||++|+
T Consensus 901 l~l~G~~~~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTt-ltti~gl 979 (1032)
T PRK09577 901 LGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTS-LAFGVGV 979 (1032)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999999985443 2345899999999999999999996 8999999
Q ss_pred HHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 003551 750 IVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795 (811)
Q Consensus 750 ~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~ 795 (811)
+||+++.+.. .+.+ ...+++.+++|.+.+|+++|++|.++.+-++
T Consensus 980 lPla~~~g~g~~~~~pl-a~~iigGL~~sT~lTL~vvP~ly~l~~~~~~ 1027 (1032)
T PRK09577 980 LPLAFASGAASGAQIAI-GTGVLGGVITATVLAVFLVPLFFVVVGRLFD 1027 (1032)
T ss_pred HHHHHccCCChHHhcCc-hhhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999986443 3333 2334456788899999999999999865433
No 18
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=100.00 E-value=1.1e-31 Score=332.30 Aligned_cols=599 Identities=13% Similarity=0.108 Sum_probs=337.8
Q ss_pred CCCeEEEEeccc--cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~--s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++....+. .+++.++.... .+..+.+++++.+.++++++|. ++...+++++|++.++.
T Consensus 321 P~g~~~~~~~d~s~~i~~~i~~l~~----~l~~g~~lv~~vl~lfl~~~r~------------~liv~~~iP~s~~~~~~ 384 (1051)
T TIGR00914 321 PEGVEIVTTYDRSQLVDAAIATVKK----NLLEGALLVIVILFLFLGNIRA------------ALIAATVIPLSLLITFI 384 (1051)
T ss_pred CCCcEEEEecCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHHHHHHHH
Confidence 456766554444 34444444332 3455555555555666676653 78888999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh-cc-----C-----CCHHHHHHHHHHhhhhHHHHHHHHHHH
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-----E-----LPLETRISNALVEVGPSITLASLSEVL 269 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~-----~-----~~~~~~~~~~~~~~g~si~~tslt~~~ 269 (811)
+|.++|+++|. ++. . .+++|+.|||+++++++.++. .+ + .++.+++.++.++.++|++.|++|+++
T Consensus 385 ~m~~~g~sln~-~sl-~-~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti~ 461 (1051)
T TIGR00914 385 GMVFQGISANL-MSL-G-ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIITL 461 (1051)
T ss_pred HHHHhCCcHHH-HHH-H-HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 444 3 566799999999999886542 21 2 567899999999999999999999999
Q ss_pred HHHhhccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcch
Q 003551 270 AFAVGSFIPM---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL 346 (811)
Q Consensus 270 ~F~~~~~~~~---~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (811)
+|+..++.+- ..++.|++..+++++++++.++|+.|+++.+..++.+. + .+ ..
T Consensus 462 ~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~-~----------------------~~-~~ 517 (1051)
T TIGR00914 462 VFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVA-E----------------------KE-NR 517 (1051)
T ss_pred HHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-c----------------------cc-Ch
Confidence 9998766432 45899999999999999999999999998876432110 0 00 01
Q ss_pred HHHHHHhhcccccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhh---hHHHHHhhc
Q 003551 347 LARYMKEVHATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHL 413 (811)
Q Consensus 347 ~~~~~~~~y~~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~---~~~~~~~~~ 413 (811)
+.+.+++.|.+++.+- .+|+.+++++++++++++++..+++.++-|.. ..|+++.+.+ ..+.+++.+
T Consensus 518 ~~~~~~~~Y~~~l~~~l~~~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l 597 (1051)
T TIGR00914 518 LMRVLKRRYEPLLERVLAWPAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLI 597 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1112233333333220 11344555666777778887788777775532 3466665544 344455555
Q ss_pred cCCCCEEEEEecCCC-------Chhhhhhhhhhcccc--------cCccchHHHHHHh-ccCCCCccc-cCCCccc----
Q 003551 414 RIGPPLYFVVKNYNY-------SSESRQTNQLCSISQ--------CDSNSLLNEISRA-SLIPQSSYI-AKPAASW---- 472 (811)
Q Consensus 414 ~~~~pv~ivv~~~~~-------~~~~~~~~~~~~~~~--------~~~~sl~~~i~~~-~~~~~~~~i-~~~~~~w---- 472 (811)
...+.+.-+...... ..++.....+ .... .+.+++.+++.+. .+.|+..+. ..+...-
T Consensus 598 ~~~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v-~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~ 676 (1051)
T TIGR00914 598 KSFPEVARVFAKTGTAEIATDPMPPNASDTYI-ILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMRFNEL 676 (1051)
T ss_pred hcCCCeEEEEEeecCCccCCCCCCCcceEEEE-EEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccChhhhHHhh
Confidence 433333222211000 0000000000 0000 0112334444332 223332110 0000000
Q ss_pred -------------------HHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCC
Q 003551 473 -------------------LDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLK 533 (811)
Q Consensus 473 -------------------l~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (811)
+++..+-+.+.. + ...+.. + + +..... + -.+..--+.......
T Consensus 677 ~~g~~~~i~i~l~G~d~~~L~~~a~~v~~~l----~-~~pgv~----~------v-~~~~~~-~-~~e~~i~id~~~~~~ 738 (1051)
T TIGR00914 677 ISGVRSDVAVKVFGDDLDDLDATAEKISAVL----K-GVPGAA----D------V-KVEQTT-G-LPYLTVEIDREKAAR 738 (1051)
T ss_pred ccCCCCCeEEEEECCCHHHHHHHHHHHHHHH----h-cCCCce----e------e-eccccC-C-CceEEEEECHHHHHH
Confidence 000000000000 0 000000 0 0 000000 0 000000000000000
Q ss_pred CCCChhhHHhhhHHHHccCCCcccccCCCCCccccc----------------ccCCC-----CCCeEE------------
Q 003551 534 DRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSV----------------DLKGY-----ENGIVQ------------ 580 (811)
Q Consensus 534 ~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v----------------~~~~~-----~~~~i~------------ 580 (811)
.--+.++..+.+.......+......|+. .|.-.+ .+... +...+.
T Consensus 739 ~Glt~~~v~~~l~~~~~g~~~g~~~~~~~-~~~i~vr~~~~~~~~~~~l~~l~i~~~~~~~~~g~~v~L~~vA~v~~~~~ 817 (1051)
T TIGR00914 739 YGLTVGDVQDTVATAVGGRMSGETFEGDR-RFDIVIRLPESLRESPQALRQLPIPLPLSEDARKQFIPLSDVADLRVSPG 817 (1051)
T ss_pred cCCCHHHHHHHHHHHhCCceeeEEEECCE-EEeEEEEcChHHhcCHHHHhCcEeeCCCccCCCCcEEEhHHceEEEEecC
Confidence 00122233333332222211110000100 000000 00000 000010
Q ss_pred ---EEEE------EeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeeh---hHHHHHHHHHHHHHHHHHH
Q 003551 581 ---ASSF------RTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYF---EQYLDIWRTALINLAIAIG 648 (811)
Q Consensus 581 ---~sr~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~la~~ 648 (811)
..|. .+.. ...+ .+..+..+++++..++. ...|.|..+.+. ++..+...+....++++++
T Consensus 818 ~~~i~r~ng~~~v~v~~-~~~~-~~~~~~~~~v~~~~~~~------~~lP~g~~~~~~g~~~~~~~~~~~l~~~~~~a~~ 889 (1051)
T TIGR00914 818 PNQISRENGKRRVVVSA-NVRG-RDLGSFVDDAKKAIAEQ------VKLPPGYWITWGGQFEQLQSATKRLQIVVPVTLL 889 (1051)
T ss_pred cceEEecCCeEEEEEEE-EeCC-CCHHHHHHHHHHHHHhc------CCCCCceEEEecchHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 1111 12233334444333221 013334434343 3344555667778889999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhc---cCCCHHHH
Q 003551 649 AVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV---SSGDKNQR 725 (811)
Q Consensus 649 ~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~---~~~~~~~~ 725 (811)
+++++++++|+|++.++++++++++++++++..|+++|.+||.++++++++++|+.||++||+..++.+ ++.+.++|
T Consensus 890 li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~A 969 (1051)
T TIGR00914 890 LIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEA 969 (1051)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865553 34589999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 726 MKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 726 ~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
+.+|.+++.+||++++ +||++||+||+++.+.. ++.+ ....++.++++++.+|+++|+++.++.++.
T Consensus 970 i~~a~~~r~rpIl~tt-ltti~g~lPl~~~~g~~~~~~~pl-a~~v~~gl~~s~~~tL~~vP~l~~~~~~~~ 1039 (1051)
T TIGR00914 970 VYEGALTRVRPVLMTA-LVASLGFVPMAIATGTGAEVQRPL-ATVVIGGIITATLLTLFVLPALYRLVHRRR 1039 (1051)
T ss_pred HHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCChhhhcCc-eEEEEchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999996 89999999999987543 3333 233345678899999999999999997644
No 19
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=100.00 E-value=1.6e-30 Score=320.27 Aligned_cols=615 Identities=12% Similarity=0.083 Sum_probs=339.9
Q ss_pred CCCeEEEEecccc--HHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~s--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++.+.++.+ +++.++.. ...+.++++++++.+.+.++++|. ++...++++++++.+++
T Consensus 318 p~g~~~~~~~d~~~~i~~~~~~~----~~~~~~~~~lv~lvl~l~l~s~r~------------~li~~~~iP~si~~t~~ 381 (1037)
T PRK10555 318 PHGLEYKVAYETTSFVKASIEDV----VKTLLEAIALVFLVMYLFLQNFRA------------TLIPTIAVPVVLMGTFS 381 (1037)
T ss_pred CCCcEEEEeecccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccHHH------------HHHHHhhhHHHHHHHHH
Confidence 4566666655443 33333332 234667777777777777787653 77888899999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh--ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~ 278 (811)
+++++|+++|. ++.+.+.+++|+.|||++|+++++++. +++.++.+++.++.++.+.+++.+++|++++|+...+.+
T Consensus 382 ~~~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~ 460 (1037)
T PRK10555 382 VLYAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1037)
T ss_pred HHHHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999997 678888999999999999999999874 358899999999999999999999999999999877653
Q ss_pred C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHH---HH
Q 003551 279 M---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MK 352 (811)
Q Consensus 279 ~---~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 352 (811)
- ..++.|++..+.+++++++.++|+.|+++....++...++.+ . .+....++.+. ++
T Consensus 461 G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~~ 523 (1037)
T PRK10555 461 GTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLKKGEHH---------G--------QKGFFGWFNRMFNRNA 523 (1037)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc---------c--------chhHHHHHHHHHHHHH
Confidence 2 447999999999999999999999999988765432111100 0 00000111121 23
Q ss_pred hhcccccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccC--CC
Q 003551 353 EVHATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRI--GP 417 (811)
Q Consensus 353 ~~y~~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~--~~ 417 (811)
+.|.+.+.+- .+|..++++++++++++++....++.++-|.. .+|+++.+.+. .+.+++.+.. .+
T Consensus 524 ~~Y~~~L~~~l~~~~~~l~~~~~~~~~~~~l~~~l~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~ 603 (1037)
T PRK10555 524 ERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKD 603 (1037)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcCCcccCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3455444321 11233344444555666665666766665432 67888766553 4445555432 23
Q ss_pred CEEEEEe--c-CCCC-hhhhhhhhhhccccc--------CccchHHHHHHh-ccCCCCccccCCCcccHHHHHhhhCcCc
Q 003551 418 PLYFVVK--N-YNYS-SESRQTNQLCSISQC--------DSNSLLNEISRA-SLIPQSSYIAKPAASWLDDFLVWISPEA 484 (811)
Q Consensus 418 pv~ivv~--~-~~~~-~~~~~~~~~~~~~~~--------~~~sl~~~i~~~-~~~~~~~~i~~~~~~wl~d~~~~l~~~~ 484 (811)
.+.-+.. + .... .++..+ ........ ..+++.+++.+. .+.|+..+...... +... .....
T Consensus 604 ~v~~~~~~~G~~~~~~~~~~~~-~~v~l~~~~~r~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~----~~~~-~g~~~ 677 (1037)
T PRK10555 604 NVMSVFATVGSGPGGNGQNVAR-MFIRLKDWDERDSKTGTSFAIIERATKAFNKIKEARVIASSPP----AISG-LGSSA 677 (1037)
T ss_pred CeEEEEEEeccCCCCCCCceEE-EEEEecCHHhCCCccCCHHHHHHHHHHHHhcCCCcEEEeeccc----cCCC-CCCCC
Confidence 3322221 1 0000 000000 00000000 012233333221 11222111000000 0000 00000
Q ss_pred ccccccCCCCCCCCCCCCC-CCCC-------CCCCCCCCCCccCCCC---cccc--cC--CCCCCCCChhhHHhhhHHHH
Q 003551 485 FGCCRKFTNGSYCPPDDQP-PCCP-------SGQSSCGSAGVCKDCT---TCFH--HS--DLLKDRPSTIQFKEKLPWFL 549 (811)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~---~~~~--~~--~~~~~~p~~~~f~~~l~~~l 549 (811)
.-.-+...+ +.++.+ .... ..+. ....++..+.. .-.+ .. .....--+.++..+.+..-+
T Consensus 678 ~v~v~l~g~----~g~d~~~L~~~a~~l~~~l~~~-~gv~~v~~~~~~~~~~l~i~id~~k~~~~Gls~~~v~~~l~~~~ 752 (1037)
T PRK10555 678 GFDMELQDH----AGAGHDALMAARNQLLALAAKN-PELTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAW 752 (1037)
T ss_pred CEEEEEEcC----CCCCHHHHHHHHHHHHHHHhcC-CCeEEEecCCcCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHh
Confidence 000000000 000000 0000 0000 00000000000 0000 00 00000001122233332221
Q ss_pred ccCCCcccccCCCCCcccccc----------------cCCCCCCeEEE---------------EEE------EeeccCCC
Q 003551 550 NALPSASCAKGGHGAYTNSVD----------------LKGYENGIVQA---------------SSF------RTYHTPLN 592 (811)
Q Consensus 550 ~~~p~~~~~~gg~~~y~~~v~----------------~~~~~~~~i~~---------------sr~------~~~~~~~~ 592 (811)
...+-.....++. .|.-.+. +...+...+.- .|. .+.. +..
T Consensus 753 ~G~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~i~~~~G~~vpL~~vA~v~~~~~~~~i~r~n~~~~v~v~~-~~~ 830 (1037)
T PRK10555 753 GSSYVNDFMDRGR-VKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVG-EAA 830 (1037)
T ss_pred cCceeeEEeeCCe-EEEEEEEeChhHhCCHHHHhheEeeCCCCCEEEhhHcEEEEEcCCccceeecCCceEEEEEE-EcC
Confidence 1110000000100 0000000 00000000000 010 0000 011
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 003551 593 RQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 672 (811)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~ 672 (811)
...+..+..+.++++.++++ .|++....|. +++...........+++++++++++++++|+|++.+++++++++
T Consensus 831 ~g~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~lv~~il~~~f~s~~~pliI~~~IP 904 (1037)
T PRK10555 831 PGVSTGTAMDIMESLVKQLP--NGFGLEWTAM----SYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVP 904 (1037)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CCcEEEecCh----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 11122234445555444432 2333333332 12222222344556778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhh---ccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003551 673 MIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGV 749 (811)
Q Consensus 673 ~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~---~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~ 749 (811)
++++|++..|+++|.+||.++++++++++|+.||++|-+..... +++.+.++|+.+|.+++.+||++|+ +||++|+
T Consensus 905 lal~G~l~~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTt-ltti~gl 983 (1037)
T PRK10555 905 LGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTS-LAFIFGV 983 (1037)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999998874433 3345889999999999999999996 8999999
Q ss_pred HHhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 003551 750 IVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 750 ~~L~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p 792 (811)
+||+++.+. +++.+ ...+++.+++|++.+|+++|++|.++..
T Consensus 984 lPlal~~g~g~~~~~pl-a~~ii~GL~~St~ltL~vvP~ly~~~~~ 1028 (1037)
T PRK10555 984 LPMATSTGAGSGSQHAV-GTGVMGGMISATILAIFFVPLFFVLVRR 1028 (1037)
T ss_pred HHHHHhcCCChHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998643 44444 2334456788999999999999998853
No 20
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=100.00 E-value=4.7e-30 Score=316.06 Aligned_cols=598 Identities=14% Similarity=0.122 Sum_probs=335.1
Q ss_pred CCCeEEEEeccc--cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~~v~~~~~~--s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
++++++.+..++ .+++.+++.. ..+.++++++++.+.+.++++|. ++...++++++++.+++
T Consensus 318 P~g~~i~~~~d~~~~i~~~~~~~~----~~l~~~~~lv~~vl~l~l~~~r~------------~li~~~~iP~sl~~~~~ 381 (1049)
T PRK15127 318 PSGLKIVYPYDTTPFVKISIHEVV----KTLVEAIILVFLVMYLFLQNFRA------------TLIPTIAVPVVLLGTFA 381 (1049)
T ss_pred CCCceEEEEecchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence 456666655443 3444544433 23566777777777777777653 77888899999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHh--ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCC
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 278 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~ 278 (811)
++.++|.++|. ++.....+++|+.|||++++++++++. +++.++.+++.++.++.+++++.+++|++++|+...+.+
T Consensus 382 ~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~~ 460 (1049)
T PRK15127 382 VLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1049)
T ss_pred HHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999997 677778888999999999999999874 357899999999999999999999999999999887743
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHH---HH
Q 003551 279 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MK 352 (811)
Q Consensus 279 ---~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 352 (811)
-..++.|++..+.+++++++.++|+.|++.....++..+.+.+ +.. .+...++.++ ++
T Consensus 461 G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~ 524 (1049)
T PRK15127 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHG--------EGK--------KGFFGWFNRMFEKST 524 (1049)
T ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc--------cch--------hhHHHHHHHHHHHHH
Confidence 2447999999999999999999999999987655432110000 000 0000112221 23
Q ss_pred hhcccccc---cccchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccC--
Q 003551 353 EVHATILS---LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRI-- 415 (811)
Q Consensus 353 ~~y~~~l~---~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~-- 415 (811)
+.|.+++. +++.+.+++ ++++++++++....++.++-|.. .+|+++.+.+. .+.+++.+..
T Consensus 525 ~~Y~~~l~~~l~~~~~~~~i--~~~~~~~~~~l~~~~~~~f~P~~d~~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~ 602 (1049)
T PRK15127 525 HHYTDSVGNILRSTGRYLVL--YLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLTKE 602 (1049)
T ss_pred HHHHHHHHHHHccchHHHHH--HHHHHHHHHHHHHhCCCCcCCcccCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 33444443 232233222 33344455544456666664432 66888765543 4445555432
Q ss_pred CCCEEEEEe--cCC--CChhhhhhhhhhccc---c-----cCccchHHHHHHh-ccCCCCc--ccc----------CCC-
Q 003551 416 GPPLYFVVK--NYN--YSSESRQTNQLCSIS---Q-----CDSNSLLNEISRA-SLIPQSS--YIA----------KPA- 469 (811)
Q Consensus 416 ~~pv~ivv~--~~~--~~~~~~~~~~~~~~~---~-----~~~~sl~~~i~~~-~~~~~~~--~i~----------~~~- 469 (811)
.+.+.-+.. +.. ...++..+ ...... . ...+++.+++++. .+.|+.. .+. .+.
T Consensus 603 ~~~v~~~~~~~G~~~~~~~~~~~~-~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~v~ 681 (1049)
T PRK15127 603 KNNVESVFAVNGFGFAGRGQNTGI-AFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFD 681 (1049)
T ss_pred CCCeeEEEEEeccCCCCCCCceEE-EEEEecCHHhCcCcccCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEE
Confidence 232221111 100 00000000 000000 0 0012233333221 1222221 000 000
Q ss_pred --------------cccHHHHHhhhCcCcccccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCC
Q 003551 470 --------------ASWLDDFLVWISPEAFGCCRKFTNGSY-CPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKD 534 (811)
Q Consensus 470 --------------~~wl~d~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (811)
..+-++..+.+...... ..+-.. ...+.++.-..+++......++
T Consensus 682 i~v~g~~~~d~~~L~~~a~~l~~~l~~~~g~----~~~v~~~~~~~~~~i~i~vd~~~~~~~Gl---------------- 741 (1049)
T PRK15127 682 FELIDQAGLGHEKLTQARNQLLGEAAKHPDM----LVGVRPNGLEDTPQFKIDIDQEKAQALGV---------------- 741 (1049)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhCCCc----eeeeecCccCCCceEEEEECHHHHHHcCC----------------
Confidence 00111122222111000 000000 0000000000011111111111
Q ss_pred CCChhhHHhhhHHHHccCCCc-------------------------------ccccCCCCCcccccccC-CCCCCeE---
Q 003551 535 RPSTIQFKEKLPWFLNALPSA-------------------------------SCAKGGHGAYTNSVDLK-GYENGIV--- 579 (811)
Q Consensus 535 ~p~~~~f~~~l~~~l~~~p~~-------------------------------~~~~gg~~~y~~~v~~~-~~~~~~i--- 579 (811)
+.++..+.+........-. .-+.|..-+.++--+++ ......+
T Consensus 742 --s~~~v~~~l~~~~~G~~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~l~i~~~~G~~V~L~~vA~v~~~~~~~~i~r~ 819 (1049)
T PRK15127 742 --SISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERY 819 (1049)
T ss_pred --CHHHHHHHHHHHhCCceeeEEeeCCEEEEEEEEEChhhcCCHHHHhhEEeECCCCCEEEhhHeEEEEEccCccceeee
Confidence 1111111111111000000 00011100011000000 0000000
Q ss_pred ---EEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHH---HHHHHHHHHHHHHHHHHHH
Q 003551 580 ---QASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLD---IWRTALINLAIAIGAVFVV 653 (811)
Q Consensus 580 ---~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~la~~~v~iv 653 (811)
.+-.......+ ..+..+..+.++++.++++ .|++ +.+..++.+ ........+++++++++++
T Consensus 820 ng~~~v~v~~~~~~---~~~~~~~~~~v~~~~~~lP--~g~~-------~~~~G~~~~~~~~~~~~~~~~~~ai~lv~lv 887 (1049)
T PRK15127 820 NGLPSMEILGQAAP---GKSTGEAMELMEELASKLP--TGVG-------YDWTGMSYQERLSGNQAPALYAISLIVVFLC 887 (1049)
T ss_pred CCceEEEEEEEeCC---CCCHHHHHHHHHHHHHhCC--CCcE-------EEeccHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 01011111111 1122234444444443332 2333 333333322 2233445567788899999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhc----cCCCHHHHHHHH
Q 003551 654 CLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEA 729 (811)
Q Consensus 654 ~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~----~~~~~~~~~~~a 729 (811)
++++|+|++.+++++++++++++|++..|+++|.+||.++++++++++|+.||++|++...+.+ ++.+..+|+.+|
T Consensus 888 L~~~f~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a 967 (1049)
T PRK15127 888 LAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEA 967 (1049)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999854432 345889999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 003551 730 LGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 730 l~~~g~pv~~~~~ltt~~g~~~L~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p 792 (811)
.+++.+||++|+ +||++|++||++..+. +++.+ ...+++.+++|++.+|+++|++|.++..
T Consensus 968 ~~~R~rPIlmTt-lTti~gllPl~l~~G~g~~~~~pl-ai~ii~GL~~St~ltL~~vP~ly~~~~~ 1031 (1049)
T PRK15127 968 VRMRLRPILMTS-LAFILGVMPLVISSGAGSGAQNAV-GTGVMGGMVTATVLAIFFVPVFFVVVRR 1031 (1049)
T ss_pred HHHhhhhHHHHH-HHHHHHHHHHHhcCCCCHHHhcCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 8999999999998744 44444 3344456788999999999999998853
No 21
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.96 E-value=2.8e-29 Score=239.89 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=147.7
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHh
Q 003551 176 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 255 (811)
Q Consensus 176 ~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (811)
+++||+||++.+++++.+|+++++|++.++|++++++..+++||+++++|+||++++.++|++.++..++++|+.+++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999987789999999999999999999999998888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccc
Q 003551 256 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 327 (811)
Q Consensus 256 ~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~ 327 (811)
+|++++.|++|++++|++++++++|++|+||++++++++++|++++|+|||+|++|.||.+.+|.|++||.|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.95 E-value=1.4e-24 Score=256.39 Aligned_cols=454 Identities=13% Similarity=0.159 Sum_probs=298.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccc
Q 003551 149 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 228 (811)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~ 228 (811)
..+.++++++++|+.+.++. .++..++.++++++.++|++.++|.++|. +......+++|+++||
T Consensus 270 ~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~ 334 (755)
T PRK13024 270 IAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDA 334 (755)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhC
Confidence 34678888888887776542 27888899999999999999999999997 6778888999999999
Q ss_pred eehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 229 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 307 (811)
Q Consensus 229 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pal 307 (811)
.+++.+++++. +++.+.++++.++.++.+.+++.|++|++++|+.+.+...+.+|.|++..++|++++++.++++.|++
T Consensus 335 ~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l 414 (755)
T PRK13024 335 NVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLL 414 (755)
T ss_pred cEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 56788999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHH----HhhcccccccccchhhhHHHHHHHHHHHHhhh
Q 003551 308 IVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM----KEVHATILSLWGVKIAVISLFVAFTLASIALC 383 (811)
Q Consensus 308 l~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~ 383 (811)
+.+..++. .++..++...+. ...++. ++..-+|+.+++ ...++.++++++++.++
T Consensus 415 ~~~~~~~~-~~~~~~~~~~kk-----------------~~~~~~~~~~~~~~~df~~~rk---~~~~iS~ili~~~l~~~ 473 (755)
T PRK13024 415 LELLVKRG-DKKPFLFGVKKK-----------------KIHNINEGVTIFDRIDFVKKRK---WFLIFSIVLVIAGIIIF 473 (755)
T ss_pred HHHhhccC-cccccccccchh-----------------hhhccccccccCccchHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 98876654 222111111000 000000 000012333322 12233334444444443
Q ss_pred h--ccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEecCCCChhhhhhhhhhcccccCccchHHHHHHhccCCC
Q 003551 384 T--RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQ 461 (811)
Q Consensus 384 ~--~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~ 461 (811)
. .++.|.| |.+|..+.+-.++. . +.+ ++.+.++... .
T Consensus 474 ~~~Gln~giD---------------------F~GG~~~~v~~~~~-~-~~~---------------~vr~~l~~~~-~-- 512 (755)
T PRK13024 474 FIFGLNLGID---------------------FTGGTRYEIRTDQP-V-DLE---------------QVRADLKELG-L-- 512 (755)
T ss_pred hhcCcccccc---------------------cCCcEEEEEEcCCC-C-CHH---------------HHHHHHHhcC-C--
Confidence 2 2222222 56665554433311 0 000 1111111000 0
Q ss_pred CccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhH
Q 003551 462 SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQF 541 (811)
Q Consensus 462 ~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f 541 (811)
.+ . +
T Consensus 513 ------------------------------~~-----~-------------------------------------~---- 516 (755)
T PRK13024 513 ------------------------------GE-----V-------------------------------------N---- 516 (755)
T ss_pred ------------------------------CC-----c-------------------------------------e----
Confidence 00 0 0
Q ss_pred HhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhH-HHHHHHHHHHHHHHhhhhcCcccc
Q 003551 542 KEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQID-YVNSMRAAREFSSRVSDSLQMEIF 620 (811)
Q Consensus 542 ~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 620 (811)
+ +. .|+ ++.. .++++. ....+.++ ..+..+++++ .+.+..+.+
T Consensus 517 ---v----~~-------~~~-------------~~~~---~~i~~~-~~~~~~~~~~~~~~~~l~~---~~~~~~~~~-- 560 (755)
T PRK13024 517 ---I----VT-------FGS-------------DNNQ---VLVRTY-GILSDDEEADTEIVAKLKN---ALKNDKGGT-- 560 (755)
T ss_pred ---E----EE-------ecC-------------CCcE---EEEEEc-CCCCcchhhhHHHHHHHHH---Hhhhhcccc--
Confidence 0 00 000 0000 001110 00011110 1111222222 121111101
Q ss_pred cccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHh
Q 003551 621 PYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMA 700 (811)
Q Consensus 621 ~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~ 700 (811)
..+...+--.--.++.+..+..+++|+++|++.+++-| .++.++..++++..-++.++|+|.++|+++|..++..+++.
T Consensus 561 ~~~~~~Vgp~~g~~~~~~~~~a~~~a~~~i~iyi~~rF-~~~~~~~aiial~~dvii~~g~~~l~~~~~~~~~iaall~i 639 (755)
T PRK13024 561 IPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRF-EWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTI 639 (755)
T ss_pred eeEEEEECHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcHHHHHHHHHH
Confidence 11111111112235667778888888888888888877 67778888888888888999999999999999999999999
Q ss_pred hhhcccchhhhhHHhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHH
Q 003551 701 VGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLG 775 (811)
Q Consensus 701 iGi~Vd~~ihi~~~f~~~~-----~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g 775 (811)
+|++||+++++..+++++. ++.++.+..++.+++...+.++ +||++++++|.+...+..+.|.+.+++ .+++|
T Consensus 640 iGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts-~tt~~~~~~L~~~g~~~i~~fa~~l~i-Gii~g 717 (755)
T PRK13024 640 IGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS-LTTLLVLLALLIFGGSSLRNFSLALLV-GLIVG 717 (755)
T ss_pred HhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHH
Confidence 9999999999999888752 3678999999999999999996 799999999999998999998655544 57889
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 003551 776 FLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 776 ~~~~L~llPvll~~~~p~~ 794 (811)
.+.++++.+.++.+++.+.
T Consensus 718 ~~ssifia~~l~~~~~~~~ 736 (755)
T PRK13024 718 TYSSIFIAAPLWLDLEKRR 736 (755)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999888766666665433
No 23
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-25 Score=252.07 Aligned_cols=610 Identities=14% Similarity=0.177 Sum_probs=361.7
Q ss_pred CCCe--EEEEeccccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 123 SKNL--TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 123 ~~~~--~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
|+++ ..+|.-+.-++..++..++. +.=+.+++.+.+.++++++|+ +++.++++++|++.+|-
T Consensus 314 P~gVki~~~ydRs~lid~AI~tv~k~----LiEg~vlV~iVl~lFLgn~Rs------------Ali~~~~lPLS~li~f~ 377 (1027)
T COG3696 314 PEGVKIVTTYDRSELIDKAIDTVSKT----LIEGSVLVIIVLALFLGNFRS------------ALIVIISLPLSLLIAFI 377 (1027)
T ss_pred CCCcEEEEEeeHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHhccHHH------------HHHHHHHHHHHHHHHHH
Confidence 4455 45566555677777776653 343444444445556688765 88889999999999999
Q ss_pred HHhhcccccchhhhhhhhhhhhhhcccceehHHHH-HHHhc----cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hh
Q 003551 201 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA-VKRQQ----LELPLETRISNALVEVGPSITLASLSEVLAFA-VG 274 (811)
Q Consensus 201 l~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~-~~~~~----~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~-~~ 274 (811)
+|.++|++.|. ++.--..+.+|+-||++++++++ |++.. ....+-+.+.++.+|++.|++++.+..++.|+ +.
T Consensus 378 ~M~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~PIF 456 (1027)
T COG3696 378 VMNFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIF 456 (1027)
T ss_pred HHHHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhhhh
Confidence 99999999996 55555566777778999888865 55543 24456677889999999999999999999999 45
Q ss_pred ccCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHH
Q 003551 275 SFIPMPA--CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMK 352 (811)
Q Consensus 275 ~~~~~~~--~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (811)
.++.... ++.+++.-.++++.+.++++|+.|++.++..|.. . ++++.++.||+.
T Consensus 457 tL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~----~--------------------~e~en~l~r~~~ 512 (1027)
T COG3696 457 TLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGI----L--------------------PESENPLMRFLI 512 (1027)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C--------------------cccccHHHHHHH
Confidence 6776655 7888999999999999999999999999887641 1 134568999999
Q ss_pred hhcccccccc-cchhhhHHHHHHHHHHHHhhhhccCCCCcccc---------ccCCCchhhhh---HHHHHhhccCCCCE
Q 003551 353 EVHATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY---FNNISEHLRIGPPL 419 (811)
Q Consensus 353 ~~y~~~l~~~-~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~---------~~p~ds~~~~~---~~~~~~~~~~~~pv 419 (811)
+.|.|.+.+- ..+..+++..++.++++.+..+++-.+|-|.- ...++..+.+. .+.+++....-|.+
T Consensus 513 r~Y~plL~~~l~~p~~vl~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV 592 (1027)
T COG3696 513 RVYAPLLEFVLKLPKLVLLGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIKKFPEV 592 (1027)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHhcCcch
Confidence 9999987651 22344555666677778887777766555432 23344444433 33444444444444
Q ss_pred EEEEec----CCCChhhh-----------hhhhhhcccccCccchHHHHHHh-ccCCCCccc-cCCCcccHHHHHhhhCc
Q 003551 420 YFVVKN----YNYSSESR-----------QTNQLCSISQCDSNSLLNEISRA-SLIPQSSYI-AKPAASWLDDFLVWISP 482 (811)
Q Consensus 420 ~ivv~~----~~~~~~~~-----------~~~~~~~~~~~~~~sl~~~i~~~-~~~~~~~~i-~~~~~~wl~d~~~~l~~ 482 (811)
.-|+.. ..-.|+.. .+++. ... ...+++.+++++. ++.|...+. ..|.+--+|+...=.+.
T Consensus 593 ~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW-~~~-~t~~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVrs 670 (1027)
T COG3696 593 ERVFGKTGRAETATDPAPLNMIETFIELKPQEEW-KDK-KTRDELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVRS 670 (1027)
T ss_pred heeeeccccCCCCCCCCCcccceeeEEecchhhC-CCc-ccHHHHHHHHHHHHHhCCCcccccccchhHHHHHHHhcccc
Confidence 433321 00111100 00010 000 0234667777765 446654321 22222223332211111
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCC---CCCCCCCCccCCCCcccccCCCCCCCCC----------hhhHHhhhHHHH
Q 003551 483 EAFGCCRKFTNGSYCPPDDQPPCCPSG---QSSCGSAGVCKDCTTCFHHSDLLKDRPS----------TIQFKEKLPWFL 549 (811)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~~~f~~~l~~~l 549 (811)
+. .-|.+.+.-. .-.+...-++ +...+..++-.+-..-.+ ..+-.|+ .+++.+.+..-+
T Consensus 671 dv--aIKvfG~Dl~---~L~~la~qI~~~lk~v~Ga~dv~~E~~~g~~---~l~I~~dReaaaRyGl~v~dv~~~v~tAl 742 (1027)
T COG3696 671 DL--AIKVFGDDLA---ELNELAEQIEEVLKTVPGAVDVLAERQEGGP---YLQIDPDREAAARYGLTVGDVQDVVKTAL 742 (1027)
T ss_pred ce--EEEEeCCCHH---HHHHHHHHHHHHHhcCcchhhheeeecCCce---eEEEecCHHHHHHhCCCHHHHHHHHHHHh
Confidence 00 0000110000 0000000000 000000000000000000 0000111 112222221111
Q ss_pred ccCCCcccccCC---------CCCcccccc----------------------cCCCCCC--eEE---EEEEEeeccCCCC
Q 003551 550 NALPSASCAKGG---------HGAYTNSVD----------------------LKGYENG--IVQ---ASSFRTYHTPLNR 593 (811)
Q Consensus 550 ~~~p~~~~~~gg---------~~~y~~~v~----------------------~~~~~~~--~i~---~sr~~~~~~~~~~ 593 (811)
...+-..-.+|. ...|.++++ ++ +.++ .|. ..|......+.+
T Consensus 743 gG~~v~~v~~g~~rf~vvvrlp~~~R~~~~~i~~L~i~~p~g~~ipL~~VA~I~-~~~Gp~~i~rEn~~r~~vV~~nvr- 820 (1027)
T COG3696 743 GGAVVGEVFEGIRRFPVVLRLPEDYRNSIEALRNLPIPTPNGQQIPLADVADIE-VVTGPNQIKRENGKRRSVVYANVR- 820 (1027)
T ss_pred CCceeeeeeccceecceEEEcchhhccCHHHHhcccccCCCCCEeehhHheeeE-eccCcchhccccCeeEEEEEEccc-
Confidence 110000000000 001111110 00 0000 000 112112222222
Q ss_pred hhHHHHHHHHHHHHH-HHhhhhcCcccccccceeeehhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 003551 594 QIDYVNSMRAAREFS-SRVSDSLQMEIFPYSVFYMYFEQYLDIWR---TALINLAIAIGAVFVVCLITTCSFWSSAIILL 669 (811)
Q Consensus 594 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~ 669 (811)
..|.-..++++++.. ++++ .|.|+.+.|.+|+++..+ .+.....+++++||+++++.|+|+..+++++.
T Consensus 821 gRDlgSfV~eaq~~i~~~V~-------LP~GY~i~~gGQFE~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~~alli~~ 893 (1027)
T COG3696 821 GRDLGSFVEEAQKAIAEKVK-------LPPGYYIEWGGQFENLQRANKRLKVVVPVSLLLIFVLLYFAFKSVGEALLIFS 893 (1027)
T ss_pred cCcHHHHHHHHHHHHHhhCC-------CCCceEEEecchhHHHHHHhhcceehHHHHHHHHHHHHHHHHccchHhHHHHh
Confidence 224444555554433 3332 566766677777765544 34445688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003551 670 VLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKL 746 (811)
Q Consensus 670 ~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~ 746 (811)
.+++.++|-+-.|++.|..++.-++++.+-..|+++.+.+....+++.. +.+-+|++.+.-.++-+|++|++ ++..
T Consensus 894 ~lP~Al~GGv~~l~l~G~~lSvas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lMTa-~~~~ 972 (1027)
T COG3696 894 NLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLMTA-LVIL 972 (1027)
T ss_pred cCcHHHhhhHHHhhhcCceEeehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999887666543 34788999999999999999997 6999
Q ss_pred HHHHHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 747 VGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 747 ~g~~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
+|++|++++.+.. .+.. ...+++.++.+.+.+|+++|++|.+++.+.
T Consensus 973 lGlvPi~~~~g~GsEV~~pl-A~vviGGl~tst~LtL~vlPaly~~~~~~~ 1022 (1027)
T COG3696 973 LGLLPILWATGAGSEVMRPL-AIVVIGGLVTSTALTLLVLPALYALFGKRR 1022 (1027)
T ss_pred HhhhhhhhhcCCchHhhccc-hheeEcceeHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988544 4433 233334566788999999999999987543
No 24
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.95 E-value=3.3e-26 Score=276.23 Aligned_cols=342 Identities=14% Similarity=0.200 Sum_probs=245.6
Q ss_pred hhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhcc-CCCCEEEEEecCCCChhhhhhhhhhccccc
Q 003551 366 IAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVKNYNYSSESRQTNQLCSISQC 444 (811)
Q Consensus 366 ~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~-~~~pv~ivv~~~~~~~~~~~~~~~~~~~~~ 444 (811)
..++++++++.++++||+.+++.+.|+.+++|+|++..+.++.++++|+ +..++++++++.|..+++..+ .+
T Consensus 5 ~~v~~~~~~l~~~~~~g~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~fg~~~~~~~v~v~~~~~~~~~~l~-~i------ 77 (719)
T TIGR00921 5 TAIILVFLALLILSAYGAQHLNVESDTEKQLPKDFESYKWYHVLQREFGTSTKTLLVVIEGDDVTRKPVLD-YM------ 77 (719)
T ss_pred hhhHHHHHHHHHHHHHhcccceeccChhhhCCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeCCCCCHHHHH-HH------
Confidence 4556677788899999999999999999999999999999999999997 446678888876666554321 11
Q ss_pred CccchHHHHHHhccCCCCccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCc
Q 003551 445 DSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT 524 (811)
Q Consensus 445 ~~~sl~~~i~~~~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (811)
+++.++++ +.|+ +.+ . .++.++.+..+. .+
T Consensus 78 --~~l~~~l~---~~~~---V~~-v-~s~~~~~~~~~~------------~~---------------------------- 107 (719)
T TIGR00921 78 --RRLEQRLR---EKPY---VTN-V-RSAADIMRQIPG------------NF---------------------------- 107 (719)
T ss_pred --HHHHHHHh---cCCC---cce-e-ecHHHHHHHhcC------------CC----------------------------
Confidence 12333332 2222 221 1 123333322110 00
Q ss_pred ccccCCCCCCCCC-hhhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHH
Q 003551 525 CFHHSDLLKDRPS-TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRA 603 (811)
Q Consensus 525 ~~~~~~~~~~~p~-~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~ 603 (811)
..|+ .++..+.+ +..|... .+.++ .++ +..++....++..+.++..+.+++
T Consensus 108 ---------~~p~~~~~~~~~~----~~~~~~~---------~~~~s----~d~--~~~~i~v~~~~~~~~~~~~~~~~~ 159 (719)
T TIGR00921 108 ---------PLPVTMPEVRPLM----SEYPRSK---------EMFLS----KDH--TVAIIIVQLKSDADYKQVVPIYND 159 (719)
T ss_pred ---------cCCCCHHHHHHHH----HhCcHHH---------HhccC----CCC--ceEEEEEEecCCCChHHHHHHHHH
Confidence 0111 12222211 1112110 00111 111 123334444433333344455677
Q ss_pred HHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 003551 604 AREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMA 683 (811)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~ 683 (811)
+++..++...+.++++...|......+....+.++.....+++++++++++++++||++.++++++++++.+++++|+|+
T Consensus 160 i~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~~~~~~~l~~~~~~~~~~~g~~~ 239 (719)
T TIGR00921 160 VERSLERTNPPSGKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMG 239 (719)
T ss_pred HHHHHhccCCCCCcEEEecCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554333466777778776667777788888888999999999999999999999999999999999999999999
Q ss_pred HhcccchhHHHHHHHHhhhhcccchhhhhHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 003551 684 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF 760 (811)
Q Consensus 684 l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~ 760 (811)
++|+++|.++++..++.+|++|||++|+.++|+++ +.+++||+++|++++|+|++.++ +||++||++|++++.+.+
T Consensus 240 ~~g~~l~~~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~-~t~~~gf~~l~~s~~~~~ 318 (719)
T TIGR00921 240 WLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIAL-LTTSAGFAALALSEFPMV 318 (719)
T ss_pred HhCCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHhccChHH
Confidence 99999999999999999999999999999999864 35899999999999999999997 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 761 VVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 761 ~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
+.| +......++++++++++++|+++.++++..
T Consensus 319 ~~~-g~~~~~gv~~~~l~~l~~lPall~~~~~~~ 351 (719)
T TIGR00921 319 SEF-GLGLVAGLITAYLLTLLVLPALLQSIDIGR 351 (719)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 997 454555678899999999999999887543
No 25
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.95 E-value=2.3e-27 Score=269.70 Aligned_cols=169 Identities=22% Similarity=0.393 Sum_probs=158.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhh
Q 003551 145 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAV 224 (811)
Q Consensus 145 ~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgi 224 (811)
..|+..+.++|++||+|+++.+++++. ++||++||++|++++++|+++++|++.++|++++.+ .+++|||+|+|
T Consensus 59 ~~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaI 132 (886)
T TIGR00920 59 SSDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLI 132 (886)
T ss_pred ccceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhh
Confidence 458889999999999999999999875 899999999999999999999999999999999985 89999999999
Q ss_pred cccceehHHHHHH-HhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 225 GVDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITA 303 (811)
Q Consensus 225 gvd~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~ 303 (811)
|+||+|++ ..|+ +..+..++++|++++++++|++|+++++|++++|++|.++++|++|.||+|++++++++|++|+||
T Consensus 133 GVDnifiL-a~~~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTf 211 (886)
T TIGR00920 133 DLSKASAL-AKFALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTF 211 (886)
T ss_pred chhhHHHH-HhhhhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 4455 455788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCc
Q 003551 304 FVALIVFDFLRAEDKRV 320 (811)
Q Consensus 304 ~pall~l~~~r~~~~r~ 320 (811)
|+|+|++.++++..+++
T Consensus 212 F~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 212 FPACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999988766654
No 26
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.94 E-value=4.4e-23 Score=242.11 Aligned_cols=447 Identities=15% Similarity=0.186 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccce
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 229 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~ 229 (811)
...++++++++|+.+.++. .++...+.++++++.++|++.++|.++|. +......+.+|+.||+.
T Consensus 377 aliig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~ 441 (855)
T PRK14726 377 AGLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSN 441 (855)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCce
Confidence 3566666776666665542 27888899999999999999999999997 66666678889999999
Q ss_pred ehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 230 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308 (811)
Q Consensus 230 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall 308 (811)
+++.++++++ +++.++.+++..+.++++.+++.+++|++++|+.+.+.+...+|.|++..+++++++++.++|+.|+++
T Consensus 442 IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~ 521 (855)
T PRK14726 442 VLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521 (855)
T ss_pred EEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999884 567899999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHHhhh--hcc
Q 003551 309 VFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALC--TRI 386 (811)
Q Consensus 309 ~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si~~~--~~l 386 (811)
.+..++...++.+. +.+..+..+..-+|+.+++.. ..+.++++++|+.++ ..+
T Consensus 522 ~~~l~~~~~~~l~~----------------------~~~~~~~~~~~~dfv~~rk~~---~~iS~ili~~si~~~~~~Gl 576 (855)
T PRK14726 522 AVWLRRRRPKHLPK----------------------GVRTGLFEGANIRFMGIRRYV---FTLSAALSLASLVLFATVGL 576 (855)
T ss_pred HHHhcccCccccch----------------------hhhhccccCCccchhhhHHHH---HHHHHHHHHHHHHHHHhcCC
Confidence 87655432222110 001111111112344333211 122223333343332 233
Q ss_pred CCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEecCCCChhhhhhhhhhcccccCccchHHHHHHhccCCCCcccc
Q 003551 387 EPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIA 466 (811)
Q Consensus 387 ~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~ 466 (811)
+.|.| |.+|..+.+-.++.+.... ++-+.+++. . .
T Consensus 577 n~GID---------------------FtGGt~i~v~~~~~~~~~~----------------~vr~~l~~~----~---~- 611 (855)
T PRK14726 577 NLGID---------------------FTGGSLIEVRAKQGNADIA----------------DIRARLNEL----N---L- 611 (855)
T ss_pred cCceE---------------------ecCceEEEEEecCCCCCHH----------------HHHHHHHhc----C---C-
Confidence 33332 5556544443221111110 011111100 0 0
Q ss_pred CCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhhHHhhhH
Q 003551 467 KPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLP 546 (811)
Q Consensus 467 ~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~ 546 (811)
+.. ..+.+
T Consensus 612 ~~~-------------------------------------------------------------------~vq~~----- 619 (855)
T PRK14726 612 GEV-------------------------------------------------------------------QVERF----- 619 (855)
T ss_pred CCc-------------------------------------------------------------------eEEEe-----
Confidence 000 00000
Q ss_pred HHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCc-ccccccce
Q 003551 547 WFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-EIFPYSVF 625 (811)
Q Consensus 547 ~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 625 (811)
|+ + +.+ .+++.... ...++..+..+.++ +.+.++.+. +...-|+.
T Consensus 620 -------------~~-------------~-~~~---~ir~~~~~-~~~~~~~~~~~~l~---~~l~~~~~~~~~~~VGp~ 665 (855)
T PRK14726 620 -------------GS-------------P-RDA---LIRIASQD-GGENAEQSAVTLVR---GELEDDYDFRRVEVVGPA 665 (855)
T ss_pred -------------cC-------------C-ceE---EEEEccCC-ccchhhHHHHHHHH---HhhhcccccceeeeeCcc
Confidence 00 0 000 00110000 00000001111111 111111111 01111111
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcc
Q 003551 626 YMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAV 705 (811)
Q Consensus 626 ~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~V 705 (811)
--.++.+..+..+++|+++|++-+.+=| .++.++..++++..=++.++|+|+++|+++|..++.++++.+|+++
T Consensus 666 -----vG~el~~~ai~Al~iAli~IliYI~~RF-~~~fa~~avial~hDv~i~~g~~~l~g~~ls~~~iaglLtliGysv 739 (855)
T PRK14726 666 -----VSGELTMAATLGVLAALAAILIYIWIRF-EWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSL 739 (855)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHee
Confidence 1124556777777777777666655544 4566777777777778889999999999999999999999999999
Q ss_pred cchhhhhHHhhccC----C-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q 003551 706 EFCVHITHAFSVSS----G-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 780 (811)
Q Consensus 706 d~~ihi~~~f~~~~----~-~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L 780 (811)
+++|++..++++.. + +..+.+..+...+..-+++++ +||++|++||++..++..+.|... ++..+++|.+.++
T Consensus 740 ndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~Ts-lTTll~llpL~l~G~~~i~~fai~-li~Gli~gt~sSi 817 (855)
T PRK14726 740 NDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTS-ATTLLALLALYLFGGEVIRSFTFA-MLFGVAVGTFSSI 817 (855)
T ss_pred eCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHH
Confidence 99999998887532 2 444556666666666688886 799999999999888888887444 3455788999999
Q ss_pred HHHHHHHHhhCCCCc
Q 003551 781 VFLPVVLSVFGPPSR 795 (811)
Q Consensus 781 ~llPvll~~~~p~~~ 795 (811)
++-+.++.+++.+.+
T Consensus 818 fvAspll~~~~~~~~ 832 (855)
T PRK14726 818 YIAAPVLIVFKLRPE 832 (855)
T ss_pred HHHHHHHHHHhhccc
Confidence 999888888864433
No 27
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=247.74 Aligned_cols=339 Identities=16% Similarity=0.191 Sum_probs=240.9
Q ss_pred ccccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCC-CCEEEEEecCCCChhhhhhh
Q 003551 358 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSESRQTN 436 (811)
Q Consensus 358 ~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~-~pv~ivv~~~~~~~~~~~~~ 436 (811)
++.+++ ..++++++++.+++.+|+.+++.+.+.+..+|+|++..+.++.+++.|+.+ ..+++++++.|..+++.-+
T Consensus 8 fi~~~r--~~i~~~~~~l~i~~~~~a~~l~~~s~~~~~~~~d~~~~k~y~~~~~~f~~~~~~i~v~ie~~dv~~~e~~~- 84 (727)
T COG1033 8 FIIRRR--KSIILIFLLLTILSAFGAQNLEFDSGTETFLPKDNEEYKNYDRLYKEFGSGTSLIVVVIEGDDVFSPEVLE- 84 (727)
T ss_pred HHHhCc--cHHHHHHHHHHHHHHHhhheeeecCCccccCCCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCHHHHH-
Confidence 344443 456667778899999999999999999999999999999999999999744 5677788877755553221
Q ss_pred hhhcccccCccchHHHHHHhccCCCCccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003551 437 QLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSA 516 (811)
Q Consensus 437 ~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (811)
.+ +++.+++ ++.|.++. ..+|.+...+. +
T Consensus 85 ~~--------~~l~~~l---~~i~gV~~----v~Spa~~~~~~-------------~----------------------- 113 (727)
T COG1033 85 AL--------DSLEERL---EEIPGVSS----VFSPADLLRQV-------------G----------------------- 113 (727)
T ss_pred HH--------HHHHHHH---hcCCCcee----ccCHHHHhhhc-------------c-----------------------
Confidence 11 1233333 33343332 23454432211 0
Q ss_pred CccCCCCcccccCCCCCCCCCh-hhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChh
Q 003551 517 GVCKDCTTCFHHSDLLKDRPST-IQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQI 595 (811)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~p~~-~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~ 595 (811)
....|+. ++-.+.......-.|+ +.... +........++.
T Consensus 114 ---------------~g~iP~~~~~i~~~~~~~~~l~~d-------------------~~~~~-----i~i~~~~~~~~~ 154 (727)
T COG1033 114 ---------------YGRIPDSDSKISEVIESNSLLSPD-------------------NTHTL-----IIIKLESDKNDA 154 (727)
T ss_pred ---------------CCCCCCchhhhHHHHhhhcccCCc-------------------ccceE-----EEEecCcchhhH
Confidence 0001111 1111111000000010 00000 111222222233
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 003551 596 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 675 (811)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~ 675 (811)
+..+..++.++..+..+-+.+.+.+.+|....-++-+..+.+++....+++.++|.+++++.|++++.+++.++++.+++
T Consensus 155 ~~~~i~~~~~~~~e~~~~~~~~~~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~~~~llpL~~~l~sv 234 (727)
T COG1033 155 QKEEIYEEIERIIEIAKFPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSVRRALLPLIIVLVSV 234 (727)
T ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444555555444433345777888888776667777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccC---CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 003551 676 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 752 (811)
Q Consensus 676 ~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~---~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L 752 (811)
++++|+|+|.|+++++.|+...++.+|++.||++|+.++|.++. ++.+||+.+|+++.|+|++.++ +||++||+.|
T Consensus 235 ~~tlG~m~llG~plt~~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~-lTT~~GF~Sl 313 (727)
T COG1033 235 LWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAA-LTTAAGFLSL 313 (727)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753 4889999999999999999997 8999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003551 753 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 753 ~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~ 791 (811)
.+++.+.++.| +......++.+.+.+++++|+++.+++
T Consensus 314 ~~s~i~~i~~~-Gi~~siGi~la~l~sl~~lp~ll~~~~ 351 (727)
T COG1033 314 LTSSIPAIKEF-GILLSIGIILAFLSSLTVLPALLILIP 351 (727)
T ss_pred HHcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999998 455556678999999999999777664
No 28
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.91 E-value=3.3e-20 Score=215.50 Aligned_cols=466 Identities=13% Similarity=0.157 Sum_probs=290.2
Q ss_pred EEeccccHHHHHhhhccc-chHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhccc
Q 003551 129 AFSSESSIEEELKRESTA-DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 207 (811)
Q Consensus 129 ~~~~~~s~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~ 207 (811)
.+..++.+.-++.+.... .....+++++++++|+.+.++. .|+..++++++.++.++|++.++|.
T Consensus 261 ~~~~~~~VgptLG~~~~~~~~~A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~ 326 (758)
T PRK13023 261 TVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGA 326 (758)
T ss_pred eeeeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333444444444333322 2233567777777777765542 2778889999999999999999999
Q ss_pred ccchhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHH
Q 003551 208 KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFS 286 (811)
Q Consensus 208 ~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~ 286 (811)
++|. +......+.+|++||+.+++.++++++ +++.+.++++.++.++++.+++.+++|++++|+.+.+...+.++.|+
T Consensus 327 ~Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FA 405 (758)
T PRK13023 327 SISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFA 405 (758)
T ss_pred CccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 9997 677777889999999999999999874 56789999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 003551 287 MFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKI 366 (811)
Q Consensus 287 ~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~ 366 (811)
+...+|++.+++.++++.|+++.+..++.+.+... + +.+..+.++..-+|+.+++ +
T Consensus 406 itliiGi~~S~~~al~vt~~l~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~dF~~~r~--~ 461 (758)
T PRK13023 406 LTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVP---------------------K-RRLKLVPTVTHIPFMRLQF--V 461 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc---------------------h-hhhhhcccCCCcchhhHHH--H
Confidence 99999999999999999999998876653222110 0 0011011111123333332 1
Q ss_pred hhHHHHHHHHHHHHhhhh--ccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEecCCCChhhhhhhhhhccccc
Q 003551 367 AVISLFVAFTLASIALCT--RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQC 444 (811)
Q Consensus 367 ~v~~~f~~~~~~si~~~~--~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~~~~~~~~~~~~~~~~~~~~~ 444 (811)
...+.++++++++..+. .++.|.| |.+|..+.+-.++.+...+
T Consensus 462 -~~~iS~il~~~~~~~~~~~Gln~GID---------------------FtGGt~i~v~~~~~~~~~~------------- 506 (758)
T PRK13023 462 -TLGISVLACAIVVALFVNIGFNYGID---------------------FRGGSMVELQARNGDANLE------------- 506 (758)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCCeE---------------------ecCceEEEEEecCCCCCHH-------------
Confidence 12222233333333322 2222222 4555544433321111100
Q ss_pred CccchHHHHHHhccCCCCccccCCCcccHHHHHhhhCcCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCc
Q 003551 445 DSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT 524 (811)
Q Consensus 445 ~~~sl~~~i~~~~~~~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (811)
++.+.+++. . .+. .
T Consensus 507 ---~vr~~l~~~------------------------~----------~~~----~------------------------- 520 (758)
T PRK13023 507 ---DINERLAEL------------------------N----------IDS----A------------------------- 520 (758)
T ss_pred ---HHHHHHHhc------------------------C----------CCC----c-------------------------
Confidence 111111100 0 000 0
Q ss_pred ccccCCCCCCCCChhhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHH
Q 003551 525 CFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAA 604 (811)
Q Consensus 525 ~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~ 604 (811)
+.+.+ ++ .++..+ +++. .... .++..+..+.+
T Consensus 521 ------------~vq~~------------------~~------------~~~~~i---~~~~--~~~~-~~~~~~~~~~l 552 (758)
T PRK13023 521 ------------RVLPA------------------KS------------PRSALV---IIGS--QEVG-DDAEQTVAVKL 552 (758)
T ss_pred ------------eEEEe------------------cC------------CCceEE---EEeC--CCCc-chHHHHHHHHH
Confidence 00000 00 000000 0111 0000 00100111111
Q ss_pred HHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003551 605 REFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAI 684 (811)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l 684 (811)
.+.+.. +.+.. +...+--.--.++.+..+.++++|+++|++-+.+-|+ +..++..++++.-=++.++|++.+
T Consensus 553 ---~~~~~~--~~~~~--~~~~VGp~vg~el~~~ai~Av~ia~i~IliYI~~RF~-~~fav~AviALiHDvlivlg~fsl 624 (758)
T PRK13023 553 ---RGEFEQ--DYSFQ--RVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFR-WQLALGAVLSTLHDVVILSGMFIV 624 (758)
T ss_pred ---HhhcCC--Cccee--EEEEECcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11110 1111111112355677788888888888877776664 455665555555556778899999
Q ss_pred hcccchhHHHHHHHHhhhhcccchhhhhHHhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchh
Q 003551 685 LKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV 759 (811)
Q Consensus 685 ~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~-----~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~ 759 (811)
+|+++|...+..++..+|.|++++|-+.-|.+|.. .+..|.+..++.++..-.+.++ +||++.+++|.+.....
T Consensus 625 ~~~e~~l~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS-~TTll~~l~L~ifGg~~ 703 (758)
T PRK13023 625 FRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTS-FVTFLAHVPLYAFGGSE 703 (758)
T ss_pred hCceecHHHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999998887776642 2566788888888776666665 69999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 003551 760 FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 760 ~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p 792 (811)
.+.|.+.+++ .+++|...++++-+.++.+++.
T Consensus 704 i~~Fal~lli-Giv~GtySSIfIAspl~~~~~~ 735 (758)
T PRK13023 704 IRMFALALSV-GIIVASYSSIFIAAPLLVQFGL 735 (758)
T ss_pred HHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhc
Confidence 8998766665 4688999999987777777753
No 29
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.89 E-value=2.2e-21 Score=212.35 Aligned_cols=200 Identities=18% Similarity=0.298 Sum_probs=173.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 003551 593 RQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 672 (811)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~ 672 (811)
+..+..+..+++++..++..+..+.+++..|...+..|....+.++.....+++++++++++++.|||++.+++.++++.
T Consensus 99 ~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~~l~~l~~~~ 178 (333)
T PF03176_consen 99 GSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRAALLPLLPVL 178 (333)
T ss_pred chhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33445567777888777776557888999999888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHhcccchhHH-HHHHHHhhhhcccchhhhhHHhhccC---CCHHHHHHHHHHHhhHHHHHHHHHH
Q 003551 673 MIVVDLMGV----MAILKIQLNAVS-VVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASVFSGITLT 744 (811)
Q Consensus 673 ~~~~~~~g~----m~l~gi~Ln~~s-~i~~~~~iGi~Vd~~ihi~~~f~~~~---~~~~~~~~~al~~~g~pv~~~~~lt 744 (811)
+++++.+|+ +.++|+++|.++ .+..++.+|+++||++|+.++|+++. .+.++++.+|++++|+|++.++ +|
T Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~-lt 257 (333)
T PF03176_consen 179 LSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSA-LT 257 (333)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHH-HH
Confidence 999998888 556778888765 45567899999999999999998863 4788999999999999999997 79
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 745 KLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 745 t~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
|++||..|.+++.+.++.| +.+....++++++.+++++|+++.++|+..
T Consensus 258 t~~gf~~L~~s~~~~~~~~-G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 258 TAIGFGSLLFSPFPPLRQF-GLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999999999999997 455556678899999999999999999886
No 30
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.86 E-value=6.5e-19 Score=214.51 Aligned_cols=627 Identities=15% Similarity=0.196 Sum_probs=364.7
Q ss_pred CCCCeEEEEeccccHHHHHhhhcccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHH
Q 003551 122 QSKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 200 (811)
Q Consensus 122 ~~~~~~v~~~~~~s~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~g 200 (811)
.++.++.+..|.....+.+...+..+... ..++..++++++.+.+|+. ..++.+++++.+++..+.|
T Consensus 160 ~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~------------i~a~lpL~t~~~s~~~a~~ 227 (937)
T COG2409 160 APDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSV------------ITAFLPLITVGLSLLVAQG 227 (937)
T ss_pred CCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 56788899888887777777666666554 3455555555555554543 2378889999999999999
Q ss_pred HHhhccc----ccchhhhhhhhhhhhhhcccceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 003551 201 FFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGS 275 (811)
Q Consensus 201 l~~~~g~----~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~ 275 (811)
+..++.. ..+.........+.+|+|+||++.++.+||+. +++.+.++++..+++.+|..+..++.|.+++++.+.
T Consensus 228 iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~ 307 (937)
T COG2409 228 IVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLS 307 (937)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHH
Confidence 8875433 23333456667889999999999999999974 567899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhc
Q 003551 276 FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 355 (811)
Q Consensus 276 ~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 355 (811)
+.++|.++..++.+++++.++.+.++|+.||++++.+||...... +. +.+ .+++++.
T Consensus 308 ~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~----~~--------------~~~----~~~w~~~- 364 (937)
T COG2409 308 FARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDP----KR--------------ASE----SRFWRRV- 364 (937)
T ss_pred hcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCc----ch--------------hhh----cchhhhh-
Confidence 999999999999999999999999999999999999888632210 00 112 2233332
Q ss_pred ccccccccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCC--CCEEEEEecCC-CChhh
Q 003551 356 ATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKNYN-YSSES 432 (811)
Q Consensus 356 ~~~l~~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~--~pv~ivv~~~~-~~~~~ 432 (811)
+.++.++|..+++.. ++.++........++.+.+.+..+|.+.+.++.++.++++|+.+ .|..+++++.+ ..+|.
T Consensus 365 ~~~v~~~P~~~l~~s--~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~~ 442 (937)
T COG2409 365 GTLVVRRPLAILVAS--LAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTPA 442 (937)
T ss_pred eeEEeeccHHHHHHH--HHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcChH
Confidence 567788775544333 34555566667889999999999999999999999999999865 58888888632 22221
Q ss_pred hhhhhhhcccccCccchHHHHHHhccCCCCccccCCC--------cccHHHHH-hhhCcC-cccccccCCCCCCCCCCCC
Q 003551 433 RQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPA--------ASWLDDFL-VWISPE-AFGCCRKFTNGSYCPPDDQ 502 (811)
Q Consensus 433 ~~~~~~~~~~~~~~~sl~~~i~~~~~~~~~~~i~~~~--------~~wl~d~~-~~l~~~-~~~~~~~~~~~~~~~~~~~ 502 (811)
... ++ +...+.+.+............|. .+|-..-. +.+... .....+........+....
T Consensus 443 ~~a-~i--------~~~~~~i~~v~gv~~v~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 513 (937)
T COG2409 443 ALA-DI--------DKIAKAIAAVPGVRRVRAATRPNGKPLDDASISFQAGMLGDQLGQSAKFLADRLLDILSLGPADLS 513 (937)
T ss_pred HHH-HH--------HHHHHHHHhccceeeeeeeeccCCcccccccccccchhhhhhhhccccccchHHHHHHhhchhHHH
Confidence 110 00 01111121111110110111111 11111100 000000 0000000000000000000
Q ss_pred CCCCCCCC-------C------CCCC----CC---cc---------------------CCCCc---ccccCCCCCCCCCh
Q 003551 503 PPCCPSGQ-------S------SCGS----AG---VC---------------------KDCTT---CFHHSDLLKDRPST 538 (811)
Q Consensus 503 ~~~~~~~~-------~------~~~~----~~---~~---------------------~~~~~---~~~~~~~~~~~p~~ 538 (811)
. ...+++ . .... .+ .- ..|-. |-..+...+.....
T Consensus 514 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~d~~~~~~d~~~~v~~~i~~~~~~~~~~v~~s~r~~l~~~~~~ 592 (937)
T COG2409 514 T-SDGLERLRAELQQLLDGAHDMSGITVAVGGATALLRDSDADLTDFLPPVVSIIVGITFCLLIPVCRSFRSPLKALLTA 592 (937)
T ss_pred H-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhhhH
Confidence 0 000000 0 0000 00 00 00000 00000000000000
Q ss_pred hhH-------------H-hhhHHHHccCCC------------------------------cccc-------cCCCCCcc-
Q 003551 539 IQF-------------K-EKLPWFLNALPS------------------------------ASCA-------KGGHGAYT- 566 (811)
Q Consensus 539 ~~f-------------~-~~l~~~l~~~p~------------------------------~~~~-------~gg~~~y~- 566 (811)
.+. . ..++..++..|+ +... +.+.....
T Consensus 593 ~~lt~~~~~g~~~~~~~~g~~~~~l~~~p~p~~~~~~~l~~~~~fg~~~~~~if~v~~~~~~~~~~~~~~~~~~~~~d~~ 672 (937)
T COG2409 593 LQLTVQAATGALVVSALDGTLPQVLALLPGPLISTMPALRIAALFGLSTDYEIFLLSRQREELAAAMGQAFDTASTDDSF 672 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccCccc
Confidence 000 0 001111222220 0000 00000000
Q ss_pred ----cccccCCC-------CCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhc---CcccccccceeeehhHH
Q 003551 567 ----NSVDLKGY-------ENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL---QMEIFPYSVFYMYFEQY 632 (811)
Q Consensus 567 ----~~v~~~~~-------~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 632 (811)
..+....+ -...+.+.+|..++..-....+.+...+.+....+...+.. +-.++..|..-.+.+-+
T Consensus 673 ~~p~~~~~~~~~~~~~~~~~s~~i~~~~~~v~~~~~~~~~~~~~~~~~i~~~~da~i~~~~Lv~a~~~l~G~~a~~~d~~ 752 (937)
T COG2409 673 YLPPEAFANGDFQKGRKITASADGMAARFVVFHFGDPASTAAIGRILAIAVAADAAIKRTPLVPAKIYLGGTAAWWLDIR 752 (937)
T ss_pred cCCHHhcCChhhhHHHHHHhccCCceEEEEEEecCCcccHHHHHHHHHHHHHHHHhccCCcccCCEEEEechHHhhhhHH
Confidence 00000000 01123445555554332223334444444444444432211 11233334333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----HHHhcccchhH-HHHHHHHhhhhccc
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGV-----MAILKIQLNAV-SVVNLVMAVGIAVE 706 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~-----m~l~gi~Ln~~-s~i~~~~~iGi~Vd 706 (811)
....++........++.+|+++.+..++...++....++.......+|. ...+|.++... -.+..++.+.+++|
T Consensus 753 ~~~~~d~~~~~i~~~~~i~ii~~i~~rs~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~d 832 (937)
T COG2409 753 DWLTHDLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSD 832 (937)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCch
Confidence 4455566666667788899999999999998888777666665554443 44566665553 55667788999999
Q ss_pred chhhhhHHhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 707 FCVHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLP 784 (811)
Q Consensus 707 ~~ihi~~~f~~~~--~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llP 784 (811)
|.+.+..+++++- +.+.+ +..|++.+|..+...+ +.....+..|.+++......-.+.+.+++++-+++.-.++.|
T Consensus 833 Y~~~li~r~ree~~~g~~~~-ii~a~~~tg~Vit~ag-~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vP 910 (937)
T COG2409 833 YNILLISRLREEIGAGLRTG-IIRAMRGTGGVITAAG-LIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVP 910 (937)
T ss_pred HHHHHHHHHHHHhccccchh-hhhhhccCCchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999998998864 45555 9999999999998765 577888999999988777776556666667778888899999
Q ss_pred HHHHhhCCCCccc
Q 003551 785 VVLSVFGPPSRCM 797 (811)
Q Consensus 785 vll~~~~p~~~~~ 797 (811)
++..++|....++
T Consensus 911 a~~~l~~~~~wwp 923 (937)
T COG2409 911 AIAALLGRWNWWP 923 (937)
T ss_pred HHHHHhhhhccCC
Confidence 9999998765554
No 31
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.86 E-value=1.4e-19 Score=221.18 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhhh--hcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 003551 598 VNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 675 (811)
Q Consensus 598 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~ 675 (811)
.+.++++|+..++.+. ++|+++...|......+...++.++......++++++++++++++||++.++++++++++++
T Consensus 228 ~~~~~~i~~~~~~~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~~l~~l~~i~~s~ 307 (862)
T TIGR03480 228 EKAINAIRAAAKDLRLDEDHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVGL 307 (862)
T ss_pred HHHHHHHHHHHHhcccCCCCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566777777765432 24677777777666667777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 003551 676 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 752 (811)
Q Consensus 676 ~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L 752 (811)
++.+|+|.++|.++|.+|++..++.+|++|||++|+.++|+++ ++++++++.+|++++|+|++.++ +||++||+.|
T Consensus 308 ~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~-lTt~~gf~~l 386 (862)
T TIGR03480 308 ILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAA-LATAAGFFAF 386 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999988875 34788999999999999999997 7999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 003551 753 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 793 (811)
Q Consensus 753 ~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~ 793 (811)
.+++.+.++.+ +.+....++++++.+++++|+++++++|+
T Consensus 387 ~~~~~~~~~~l-g~~~~~gv~~s~l~~l~llP~l~~~~~~~ 426 (862)
T TIGR03480 387 LPTDYKGVSEL-GIIAGTGMFIALFVTLTVLPALLRLLRPP 426 (862)
T ss_pred HHcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998888887 34444567889999999999999999654
No 32
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.84 E-value=3.6e-17 Score=192.93 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccce
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 229 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~ 229 (811)
..+++++++++|+.+.++- .++...+.+++.++.+++++.++|.++|+ +......+++|+.|||.
T Consensus 914 A~lIglaLVlIFMlL~YRf--------------~GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdn 978 (1403)
T PRK12911 914 SVCLGLAVLIVLMSVYYRF--------------GGVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDAN 978 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCC
Confidence 3455555555565554331 16677778888899999999999999997 66777788899999999
Q ss_pred ehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 230 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308 (811)
Q Consensus 230 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall 308 (811)
+++.+++++. +++.+..+++..+.+++..+|+.|++|++++++.+.+.....++.|++...+|++++++.++++.|+++
T Consensus 979 IVIfERIREELr~Gksl~eAI~~G~~~afs~ILdTnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll 1058 (1403)
T PRK12911 979 VLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFF 1058 (1403)
T ss_pred EEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999884 568899999999999999999999999999999887776777999999999999999999999999999
Q ss_pred HHHHhhh
Q 003551 309 VFDFLRA 315 (811)
Q Consensus 309 ~l~~~r~ 315 (811)
.+..++.
T Consensus 1059 ~l~l~~~ 1065 (1403)
T PRK12911 1059 MIWMNKT 1065 (1403)
T ss_pred HHHHhcC
Confidence 8876553
No 33
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.83 E-value=1.6e-18 Score=211.88 Aligned_cols=198 Identities=18% Similarity=0.216 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 003551 595 IDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 674 (811)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~ 674 (811)
.+..+.++++++..++...+.+.+++..|......|....+.++......+++++++++++++|||++.+++++++++++
T Consensus 131 ~~~~~~v~~v~~~i~~~~~~~g~~v~vtG~~~~~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~~~~llpl~~i~ls 210 (910)
T TIGR00833 131 KEAQEAINAVRRIVEQTNAPDGLTVHVTGPLATIADILESGDKDMNRITATTGIIVLIILLLVYRSPITMLVPLVSVGFS 210 (910)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777666554334567777778766667777777778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc----chhHHHHHH-HHhhhhcccchhhhhHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003551 675 VVDLMGVMAILKIQ----LNAVSVVNL-VMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKL 746 (811)
Q Consensus 675 ~~~~~g~m~l~gi~----Ln~~s~i~~-~~~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~ 746 (811)
+++.+|+|+++|.. +|..+...+ ++.+|+++||++|+.++|+++ ++++++++.+|++++|+||+.++ +|++
T Consensus 211 i~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~-lT~~ 289 (910)
T TIGR00833 211 VVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSA-LTVA 289 (910)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999985 556666554 788999999999999999875 35889999999999999999997 7999
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 747 VGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 747 ~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
+||++|.+++.+.++.|. ......++++++.+++++|+++.++|++.
T Consensus 290 ~gf~~l~~~~~~~~~~~G-i~~a~gvl~a~l~~ltllPall~l~g~~~ 336 (910)
T TIGR00833 290 VAFLALSLARLPSFKTLG-VSCAVGVLVALLNAVTLTPALLTLEGREG 336 (910)
T ss_pred HHHHHHHHccChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999873 33344567799999999999999998754
No 34
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.83 E-value=1.2e-19 Score=198.62 Aligned_cols=217 Identities=21% Similarity=0.360 Sum_probs=171.8
Q ss_pred cceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHH-HHHHH
Q 003551 78 EASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYL 156 (811)
Q Consensus 78 ~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~-~~~~~ 156 (811)
+.++..++..++...+ .+...+.-+++.+.+++.. ..++.+++..|...+..+..+....|.... .++++
T Consensus 84 D~~~~~~~v~~~~~~~-----~~~~~~~~~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~ 154 (333)
T PF03176_consen 84 DGRAALVVVQLKGDPG-----SQEAQEAVKAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALL 154 (333)
T ss_pred CCCEEEEEEEecCCcc-----hhhHHHHHHHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566555555552111 1223333455555555542 467889999999999999988888887764 56667
Q ss_pred HHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHH----HhhcccccchhhhhhhhhhhhhhcccceehH
Q 003551 157 VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCIL 232 (811)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl----~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l 232 (811)
++++.+.+.+|+++ .++.+++++.+++++++|+ +.+.|.+++.+...++..+++|+|+||.+|+
T Consensus 155 ~i~lvl~~~fRs~~------------~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l 222 (333)
T PF03176_consen 155 LIFLVLLLVFRSVR------------AALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHL 222 (333)
T ss_pred HHHhhhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHH
Confidence 77776667666542 3788899999999999999 3456777776443445568899999999999
Q ss_pred HHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 233 VHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD 311 (811)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~ 311 (811)
+++|+++ .++.+.++++.++++++|.+++.+++|++++|+++.++++|.+|+||+.+++|++++++..+|++||++.+.
T Consensus 223 ~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~ 302 (333)
T PF03176_consen 223 INRYREELRRGMSRKEAIRRAVRSTGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLL 302 (333)
T ss_pred HHHHHHHHHhccchHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999985 467889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhh
Q 003551 312 FLRA 315 (811)
Q Consensus 312 ~~r~ 315 (811)
+++.
T Consensus 303 ~~~~ 306 (333)
T PF03176_consen 303 GRWR 306 (333)
T ss_pred Cccc
Confidence 7763
No 35
>COG4258 Predicted exporter [General function prediction only]
Probab=99.72 E-value=3.6e-14 Score=153.71 Aligned_cols=251 Identities=18% Similarity=0.127 Sum_probs=155.8
Q ss_pred CeEEEEeccccHHHHHhhhcccchHHHHH-HHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHH-
Q 003551 125 NLTLAFSSESSIEEELKRESTADAITIVI-SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF- 202 (811)
Q Consensus 125 ~~~v~~~~~~s~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~- 202 (811)
..++...|.-...++....++.|+.++.+ +.+.+++.+...+|++|- -+.|++++..+.++++.-.
T Consensus 235 a~ql~~tGp~fyA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~Rv------------llLgvls~gig~laglvAt~ 302 (788)
T COG4258 235 AAQLLSTGPVFYADYARQQAKQDISTLGVASLLGIILLLLAVFRSLRV------------LLLGVLSIGIGALAGLVATL 302 (788)
T ss_pred hhhhhhcCCeeeeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchhH------------HHHHHHHhhHHHHHHHHHHH
Confidence 34444455556678888888888888753 334444555556677652 3456666666666554433
Q ss_pred hhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhccC--CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCCh
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLE--LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280 (811)
Q Consensus 203 ~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~ 280 (811)
..||. +.. ++.++-+-+||+.+||.+++....+. ++ .++. +..+|.-+++.+.-+|++++|..+.++++|
T Consensus 303 laFg~-lH~-lTl~fg~slIGeAvDYsI~yfv~h~~--pG~~~dp~----rsaaev~paL~lallTtvlayatmlfs~fp 374 (788)
T COG4258 303 LAFGE-LHL-LTLVFGMSLIGEAVDYSIYYFVEHMV--PGNDVDPW----RSAAEVRPALLLALLTTVLAYATMLFSPFP 374 (788)
T ss_pred HHHhh-HhH-HHHHhhhhheeecccceeeehhhccC--CCCCCChh----HHHHHhhHHHHHHHHHHHHHHHHHHhcCCh
Confidence 34443 333 56777788999999999887653332 33 3333 347889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccc
Q 003551 281 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 360 (811)
Q Consensus 281 ~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~ 360 (811)
++|++++|+..|+..+++....+.|.+. ++. ..|. ......+.||... +=.
T Consensus 375 gLrQLa~faivGL~aAaltvrfllP~L~----~~a-~~rp--------------------v~~~arlarwlaa----~~~ 425 (788)
T COG4258 375 GLRQLAIFAIVGLLAAALTVRFLLPWLC----RGA-PVRP--------------------VPAMARLARWLAA----WRR 425 (788)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhc----CCC-CCCC--------------------chHHHHHHHHHHh----ccc
Confidence 9999999999999999999999999774 111 1000 0011223344332 112
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhccCCCCccccccCCCchhhhhHHHHHhhccCC-CCEEEEEec
Q 003551 361 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKN 425 (811)
Q Consensus 361 ~~~~~~~v~~~f~~~~~~si~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~-~pv~ivv~~ 425 (811)
.+|.+. .+.+.+++.....-|....+.+-|..++-|-+..+..--..++...+.. ..-.+++++
T Consensus 426 ~~w~la-~llVal~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 426 NKWLLA-GLLVALALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred ccchhh-hHHHHHHHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 222221 1222222333335577777888888888887765554444455555432 222344554
No 36
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.71 E-value=4.8e-16 Score=191.83 Aligned_cols=190 Identities=13% Similarity=0.203 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcccccccceee-ehhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 003551 596 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYM-YFEQY---LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVL 671 (811)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i 671 (811)
+..+..+++++..+++++. .|.|..+. .+|+. .+...+...+++.+++++++++++++++++.++++++++
T Consensus 291 n~~~v~~~v~~~l~~~~~~-----lP~g~~~~~~~d~~~~i~~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~~I 365 (1017)
T PRK09579 291 NPLDVIKEVRAIMPELESQ-----LPPNLKVSIAYDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTI 365 (1017)
T ss_pred CHHHHHHHHHHHHHHHHhh-----CCCCcEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4445556666555554321 22222221 12332 344567788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhh---ccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003551 672 TMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVG 748 (811)
Q Consensus 672 ~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~---~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g 748 (811)
++++++++++|+++|++||.+|++++++++|+.||++||+..++. +.++++.+|+.++.+++++|++.++ +||++|
T Consensus 366 P~s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~st-lTti~~ 444 (1017)
T PRK09579 366 PLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMT-ITLAAV 444 (1017)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999985443 3456899999999999999999995 899999
Q ss_pred HHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 003551 749 VIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 749 ~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p 792 (811)
|+|++|.++ .+++.+ ...+...++++++.+++++|++++.+-+
T Consensus 445 f~Pl~f~~g~~g~~~~~l-~~~v~~~l~~S~l~al~l~P~l~~~~~~ 490 (1017)
T PRK09579 445 YAPIGFLTGLTGALFKEF-ALTLAGAVIISGIVALTLSPMMCALLLR 490 (1017)
T ss_pred HHHHhhcCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999874 445554 3344456788999999999999998854
No 37
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.69 E-value=1.1e-15 Score=189.39 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+...+...++.++++++++++++++++++.++++++++++++++++++|+++|+++|.+|+.++++++|+.||++||+.
T Consensus 328 ~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~ 407 (1025)
T PRK10614 328 RASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVL 407 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEEE
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---HHhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 ---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVV 786 (811)
Q Consensus 713 ---~~f~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPvl 786 (811)
+++++++.++.+|+.++.++++.|++.++ +||++||+|++|.++ .+++.+ ....+..++++++.+++++|++
T Consensus 408 e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~st-ltti~~f~Pl~~~~g~~g~~~~~~-~~~~~~~l~~S~~~al~~~P~l 485 (1025)
T PRK10614 408 ENISRHLEAGMKPLQAALQGVREVGFTVLSMS-LSLVAVFLPLLLMGGLPGRLFREF-AVTLSVAIGISLLVSLTLTPMM 485 (1025)
T ss_pred eHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556899999999999999999985 899999999999876 456665 3444456788999999999999
Q ss_pred HHhhCC
Q 003551 787 LSVFGP 792 (811)
Q Consensus 787 l~~~~p 792 (811)
++++.+
T Consensus 486 ~~~~~~ 491 (1025)
T PRK10614 486 CAWLLK 491 (1025)
T ss_pred HHHhcc
Confidence 998754
No 38
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.68 E-value=1.6e-15 Score=187.76 Aligned_cols=157 Identities=14% Similarity=0.195 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
+..++...++.+++++++++++++++|++.++++++++++++++++++|+++|+++|.+|++++++++|+.|||+||+..
T Consensus 334 ~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie 413 (1032)
T PRK09577 334 VSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVE 413 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEeh
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred Hhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 714 AFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVV 786 (811)
Q Consensus 714 ~f~~----~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~---~~~~f~f~~~~~~i~~g~~~~L~llPvl 786 (811)
++.+ .++++.+++.+|.+++++|++.++ +||+++|+|++|.++. +++.+ ...+...++++++.+++++|++
T Consensus 414 ~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~t-lt~~~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~S~~~al~~~P~l 491 (1032)
T PRK09577 414 NVERLMVEEGLSPYDATVKAMKQISGAIVGIT-VVLTSVFVPMAFFGGAVGNIYRQF-ALSLAVSIGFSAFLALSLTPAL 491 (1032)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 245889999999999999999885 8999999999998854 34444 3334455688999999999999
Q ss_pred HHhhCC
Q 003551 787 LSVFGP 792 (811)
Q Consensus 787 l~~~~p 792 (811)
+..+.+
T Consensus 492 ~~~~~~ 497 (1032)
T PRK09577 492 CATLLK 497 (1032)
T ss_pred HHHhcC
Confidence 998864
No 39
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.67 E-value=4.6e-15 Score=156.80 Aligned_cols=158 Identities=12% Similarity=0.180 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.++.++....++++++++++.+.+.|+ ++.++.++++++..+++++|+|.++|+++|..++.++++.+|++||+++|+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F~-~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRFE-WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 466778888889999999999988885 8889999999999999999999999999999999999999999999999998
Q ss_pred HHhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 787 (811)
Q Consensus 713 ~~f~~~-----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll 787 (811)
.++++. +++.+|++.+|..++++|++.++ +||++|++||++..++.++.|. ..++..++.|++.++++.|.++
T Consensus 202 drire~~~~~~~~~~~~av~~a~~~~~~~~l~Ts-lTTl~~~l~L~~~g~~~i~~fa-~~l~~Gli~~~~~sl~i~p~l~ 279 (289)
T PRK13022 202 DRIRENFRKIRRKTFAEIINLSINQTLSRTIITS-LTTLLVVLALYLFGGGTLHDFA-LALLIGIIVGTYSSIFVASPLL 279 (289)
T ss_pred eHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 777643 34788999999999999999997 7999999999999988888884 4444567899999999999999
Q ss_pred HhhCCC
Q 003551 788 SVFGPP 793 (811)
Q Consensus 788 ~~~~p~ 793 (811)
.+++++
T Consensus 280 ~~~~~~ 285 (289)
T PRK13022 280 LWLGVR 285 (289)
T ss_pred HHHhhc
Confidence 998654
No 40
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.67 E-value=2.3e-15 Score=186.51 Aligned_cols=159 Identities=13% Similarity=0.265 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+..++...++.+++++++++++++++|++.++++++++++++++++|+|+++|+++|.+|++++++++|+.||++||+.
T Consensus 334 ~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~si~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvv 413 (1037)
T PRK10555 334 KASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVV 413 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeH
Confidence 45567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 713 ~~f~~----~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
.++++ .+.++.+++.+|.+++++|++.++ +||+++|+|++|.++ .+++.+ ...++..++++++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~st-ltti~~flPl~~~~G~~g~~~~~l-~~~v~~~l~~S~~~al~l~P~ 491 (1037)
T PRK10555 414 ENVERIMSEEGLTPREATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGTTGAIYRQF-SITIVSAMVLSVLVAMILTPA 491 (1037)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66543 244899999999999999999985 899999999999865 344444 233334568899999999999
Q ss_pred HHHhhCCC
Q 003551 786 VLSVFGPP 793 (811)
Q Consensus 786 ll~~~~p~ 793 (811)
++..+.++
T Consensus 492 l~~~~~~~ 499 (1037)
T PRK10555 492 LCATLLKP 499 (1037)
T ss_pred HHHHHccc
Confidence 99987653
No 41
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.67 E-value=2.2e-15 Score=186.67 Aligned_cols=158 Identities=13% Similarity=0.252 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+...+...++++++++++++++++++|++.++++++++++++++++++|+++|+++|.+|++++++++|+.||++||+.
T Consensus 334 ~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r~~li~~~~iP~s~~~~~~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~ 413 (1044)
T TIGR00915 334 SASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVV 413 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecceEEEe
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhc---c-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSV---S-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 713 ~~f~~---~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
.++.+ + +.++.+++.++.+++++|++.++ +||++||+|++|.++ ++++.+ ...++..++++++.+++++|+
T Consensus 414 e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~tt-ltti~~flPl~~~~G~~g~~~~~~-~~~i~~~l~~S~l~al~~~P~ 491 (1044)
T TIGR00915 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1044)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55432 2 34889999999999999999985 899999999999874 445555 333445568899999999999
Q ss_pred HHHhhCC
Q 003551 786 VLSVFGP 792 (811)
Q Consensus 786 ll~~~~p 792 (811)
++.++.+
T Consensus 492 l~~~~~~ 498 (1044)
T TIGR00915 492 LCATMLK 498 (1044)
T ss_pred HHHHhcC
Confidence 9988754
No 42
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.67 E-value=2.7e-15 Score=185.83 Aligned_cols=158 Identities=13% Similarity=0.246 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+..++...++.+++++++++++++++|++.++++++++++++++++++|+++|+++|.+|++++++++|+.||++||+.
T Consensus 334 ~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~~li~~~~iP~sl~~~~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvi 413 (1049)
T PRK15127 334 KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVV 413 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEe
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 713 ~~f~~----~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
.++.+ .+.++.+++.++.+++++|++.++ +||++||+||+|.++ ..++.+ ...++..++++++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~t-ltt~~~f~Pl~~~~G~~g~~~~~~-~~~~~~~l~~S~l~al~~vP~ 491 (1049)
T PRK15127 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1049)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 65543 244889999999999999999985 899999999999664 445554 334445678899999999999
Q ss_pred HHHhhCC
Q 003551 786 VLSVFGP 792 (811)
Q Consensus 786 ll~~~~p 792 (811)
++.++.+
T Consensus 492 l~~~~l~ 498 (1049)
T PRK15127 492 LCATMLK 498 (1049)
T ss_pred HHHHhCC
Confidence 9998754
No 43
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.67 E-value=1.2e-15 Score=184.65 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhh
Q 003551 632 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 711 (811)
Q Consensus 632 ~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi 711 (811)
-....++....++.|++++++++++|+++++.++++.++++++++++|++|+++|.+||.+|+..+++++|+.||++|.+
T Consensus 324 V~~si~~v~~tL~~a~~lVv~Vi~lFL~~~ratlI~~iaiPlsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVV 403 (1009)
T COG0841 324 IKASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVV 403 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeEEeeeechHHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h---HHhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 712 T---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 712 ~---~~f~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
. +++++ +.++.||+.++.++++.||+.++ +|+++.|+|++|.++ ++++.| +..+...++++++.++++.|+
T Consensus 404 vENI~R~~~-G~~p~~Aa~~a~~ei~~~via~T-lvliaVF~Pi~f~~G~~G~~f~~f-~~tia~a~~~S~~vAltltP~ 480 (1009)
T COG0841 404 VENIERHMR-GLPPREAAEKAMGEIGGAVIAIT-LVLIAVFLPMAFMGGSTGELFRQF-AITIAVAMLLSLLVALTLTPA 480 (1009)
T ss_pred EeeEEeecC-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6 44445 66899999999999999999985 899999999999985 556665 344445678999999999999
Q ss_pred HHHhhCCCCc
Q 003551 786 VLSVFGPPSR 795 (811)
Q Consensus 786 ll~~~~p~~~ 795 (811)
|.+.+-++..
T Consensus 481 L~a~lLk~~~ 490 (1009)
T COG0841 481 LCARLLKPVP 490 (1009)
T ss_pred HHHHhCCccc
Confidence 9998866543
No 44
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.66 E-value=2.2e-15 Score=149.85 Aligned_cols=128 Identities=15% Similarity=0.238 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
+..++...++.+++++++++++++++ ++.++.++++++..++.++|+|+++|+++|..+++++++++|++||+++|+..
T Consensus 44 ~~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e 122 (192)
T TIGR00916 44 ELIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehH
Confidence 34567788889999999999999888 67777777788888999999999999999999999999999999999999998
Q ss_pred Hhhc-----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHH
Q 003551 714 AFSV-----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 763 (811)
Q Consensus 714 ~f~~-----~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f 763 (811)
+|++ +++++++++.+|.+++++|++.++ +||++||.||.+.+.+.++.|
T Consensus 123 ~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~tt-lTtii~f~pl~~~~~~~~~~~ 176 (192)
T TIGR00916 123 RIREELRKYKGRTFREAINLGINQTLSRIIDTN-VTTLLAVLALYVFGGGAIKGF 176 (192)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Confidence 7764 344889999999999999999996 899999999999988887776
No 45
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.65 E-value=4.1e-15 Score=184.08 Aligned_cols=159 Identities=15% Similarity=0.233 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhh
Q 003551 632 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 711 (811)
Q Consensus 632 ~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi 711 (811)
..+..++...++.++++++++++++++++++.++++.+++++++++++++|+++|+++|.+|++++++++|+.||++||+
T Consensus 336 i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r~~~i~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aIvv 415 (1040)
T PRK10503 336 IRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVV 415 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHheeeeecCeEEE
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhc---cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 712 THAFSV---SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 785 (811)
Q Consensus 712 ~~~f~~---~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPv 785 (811)
..++.+ ++.++.+++.++.++++.|++++. +||+++|+|++|.+. .+++.+ .......++++++.+++++|+
T Consensus 416 ~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~t-ltti~~f~Pl~~~~g~~G~~~~~~-~~~v~~~l~~S~~~al~~~P~ 493 (1040)
T PRK10503 416 IENISRYIEKGEKPLAAALKGAGEIGFTIISLT-FSLIAVLIPLLFMGDIVGRLFREF-AVTLAVAILISAVVSLTLTPM 493 (1040)
T ss_pred ehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 855443 344788999999999999999985 899999999999875 566665 344445678899999999999
Q ss_pred HHHhhCC
Q 003551 786 VLSVFGP 792 (811)
Q Consensus 786 ll~~~~p 792 (811)
++..+.+
T Consensus 494 l~~~~l~ 500 (1040)
T PRK10503 494 MCARMLS 500 (1040)
T ss_pred HHHHhCc
Confidence 9997754
No 46
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.63 E-value=8e-15 Score=183.05 Aligned_cols=192 Identities=18% Similarity=0.268 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCccccccccee-eehhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 003551 596 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFY-MYFEQY---LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVL 671 (811)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i 671 (811)
+.++..+++++..+++++. +|.|..+ ..+||- .+..+....++.++++++++++++++++++.++++.+++
T Consensus 291 n~v~~~~~v~~~l~~~~~~-----lp~~~~~~~~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~~I 365 (1021)
T PF00873_consen 291 NIVEVSDAVKKRLEELQKT-----LPEGLEITIVYDQSEYIEESINNLISNLLIGIILVVLVLLLFLRNWRSALIVALSI 365 (1021)
T ss_dssp BHHHHHHHHHHHHHHHGGG-----SSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-----CCccceEEEEEechHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Confidence 4556666777666666542 2333222 233443 345567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh---HHhhcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003551 672 TMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLV 747 (811)
Q Consensus 672 ~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~---~~f~~~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~ 747 (811)
++++++++.+|+++|++||.+|+.++++++|+-||++|-+. |+++++ ++++.+++.++.++++.|++.+. +||++
T Consensus 366 Pisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~st-lTti~ 444 (1021)
T PF00873_consen 366 PISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILAST-LTTIA 444 (1021)
T ss_dssp HHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999887 444455 67999999999999999999995 89999
Q ss_pred HHHHhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 748 GVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 748 g~~~L~fs~~~~---~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
.|+|++|.++.. ++.+ ...+...++++++.+++++|++..++-++.
T Consensus 445 vF~Pl~f~~G~~g~~~~~l-~~~v~~al~~Sllval~~~P~l~~~~l~~~ 493 (1021)
T PF00873_consen 445 VFLPLLFMPGIAGQFFRPL-ALTVIIALIASLLVALTLVPALAALFLKPK 493 (1021)
T ss_dssp HTCGGGGSBHHHHHHHHHH-HHHHHHHHHHHHHHHHTTHHHHHHHCS---
T ss_pred HhhhhhhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 999999998543 4443 222334567889999999999999875443
No 47
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.63 E-value=2.7e-13 Score=168.19 Aligned_cols=150 Identities=14% Similarity=0.186 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHhhc-----------c-hhHHHHHHHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHhhhhcccch
Q 003551 642 NLAIAIGAVFVVCLITTC-----------S-FWSSAIILLVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVEFC 708 (811)
Q Consensus 642 ~~~la~~~v~iv~~l~~~-----------s-~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~-s~i~~~~~iGi~Vd~~ 708 (811)
.++++.++|++...+.+. | ++.++..++.+.++++..+|+++++|++++.+ +.+...+.+|++||+.
T Consensus 574 ~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~i 653 (1204)
T TIGR00917 574 TILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNI 653 (1204)
T ss_pred HHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHH
Confidence 455555555554433322 2 44566667777888889999999999999965 6677778889999876
Q ss_pred hhhhHHhhccC----C---------CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHH
Q 003551 709 VHITHAFSVSS----G---------DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLG 775 (811)
Q Consensus 709 ihi~~~f~~~~----~---------~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g 775 (811)
-+++++|.+.. . +.++|+.++++++|.||+.++ +|+++||+..++++.+.++.| ....++.+++.
T Consensus 654 filv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~lts-lt~~~aF~~g~~s~~Pavr~F-~~~aa~av~~~ 731 (1204)
T TIGR00917 654 FILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS-LSESLAFFLGALSKMPAVRAF-SLFAGLAVFID 731 (1204)
T ss_pred HHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHhccCChHHHHH-HHHHHHHHHHH
Confidence 65667775421 1 578999999999999999997 799999999999999999997 34444567889
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 003551 776 FLHGLVFLPVVLSVFGPP 793 (811)
Q Consensus 776 ~~~~L~llPvll~~~~p~ 793 (811)
++..++++|++|++-+++
T Consensus 732 fll~it~f~alL~ld~rR 749 (1204)
T TIGR00917 732 FLLQITAFVALLVLDFKR 749 (1204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987653
No 48
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.60 E-value=3.7e-14 Score=147.09 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.++.++....++++++++++.+.+.|+ ++.+++++++++..+++++|.|+++|+++|..++.++++++|++||+++++.
T Consensus 94 ~~~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~ 172 (246)
T TIGR00966 94 GELARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVF 172 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEe
Confidence 345556666667777777777766666 8899999999999999999999999999999999999999999999999998
Q ss_pred HHhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVF 782 (811)
Q Consensus 713 ~~f~~~-----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~l 782 (811)
.++++. +++..+++.+|.+++++|++.++ +||++|++||++.+.+.++.|. ..++..+++|.+.++++
T Consensus 173 d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~tt-ltti~~flpl~~~~g~~~~~~a-~~~~~Gli~~t~~sl~i 245 (246)
T TIGR00966 173 DRIRENLRKYTRKTFTEVINLSINQTLSRTINTS-LTTLLAVLALYVFGGGVIKDFS-LALLVGVIVGTYSSIFI 245 (246)
T ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 666532 35889999999999999999996 7999999999999888888774 33334456676666653
No 49
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.59 E-value=5e-14 Score=175.47 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCccccccccee-eehhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 003551 597 YVNSMRAAREFSSRVSDSLQMEIFPYSVFY-MYFEQY---LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 672 (811)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~ 672 (811)
..+..+++++..+++++. .|.|..+ ..+|+- .+...+...++++++++++++++++++|++.++++.++++
T Consensus 302 ~~~v~~~V~~~l~~~~~~-----lP~g~~~~~~~d~s~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r~~liv~~~iP 376 (1051)
T TIGR00914 302 SRTVAQAVGDKLETINKT-----LPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIP 376 (1051)
T ss_pred HHHHHHHHHHHHHHHHhh-----CCCCcEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555544321 2333322 123443 3445677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHH---hhcc-----C-----CCHHHHHHHHHHHhhHHHHH
Q 003551 673 MIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHA---FSVS-----S-----GDKNQRMKEALGTMGASVFS 739 (811)
Q Consensus 673 ~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~---f~~~-----~-----~~~~~~~~~al~~~g~pv~~ 739 (811)
+++++++.+|+++|++||.+|+. .+++|+.||++|.+..+ ++++ + +++.+|+.++.+++++||++
T Consensus 377 ~s~~~~~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~ 454 (1051)
T TIGR00914 377 LSLLITFIGMVFQGISANLMSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIF 454 (1051)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 56779999999988733 2222 1 35678999999999999999
Q ss_pred HHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 003551 740 GITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 740 ~~~ltt~~g~~~L~fs~~---~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p 792 (811)
++ +||+++|+|++|.++ .+++.+ ...+++.++++++.+|+++|+++..+.+
T Consensus 455 st-lTti~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~Sll~al~~~P~l~~~~~~ 508 (1051)
T TIGR00914 455 GQ-LIITLVFLPIFTLTGVEGKMFHPM-AFTVVLALAGAMILSLTFVPAAVALFIR 508 (1051)
T ss_pred HH-HHHHHHHHHHHHccchHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 95 899999999998774 455555 3444456788999999999999998854
No 50
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.57 E-value=1.4e-13 Score=163.28 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhh
Q 003551 632 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 711 (811)
Q Consensus 632 ~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi 711 (811)
-.+..+....+++++++++++++++.+++ .+++++++++..++.++|+|+++|+++|..++.++++.+|++||+++|+
T Consensus 261 g~~a~~~~~~a~~ial~lV~i~l~~~fr~--~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~iGi~Vd~~Ivi 338 (755)
T PRK13024 261 GQDAIDAGIIAGIIGFALIFLFMLVYYGL--PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLI 338 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhCcEEe
Confidence 34566788888999999999999999986 6788888888889999999999999999999999999999999999999
Q ss_pred hHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 712 THAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 788 (811)
Q Consensus 712 ~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~ 788 (811)
..+++++ +++.++++.++.+++++|++.+. +||++|++||++.....++.|. .+++..++++++.++++.|+++.
T Consensus 339 ~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~-lTTii~~lpL~~~g~g~~~~fa-itl~~Gli~s~~~sl~v~p~l~~ 416 (755)
T PRK13024 339 FERIKEELRKGKSLKKAFKKGFKNAFSTILDSN-ITTLIAAAILFFFGTGPVKGFA-TTLIIGILASLFTAVFLTRLLLE 416 (755)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887754 45889999999999999999996 7999999999987777788873 44445678999999999999999
Q ss_pred hhCCCC
Q 003551 789 VFGPPS 794 (811)
Q Consensus 789 ~~~p~~ 794 (811)
++.++.
T Consensus 417 ~~~~~~ 422 (755)
T PRK13024 417 LLVKRG 422 (755)
T ss_pred HhhccC
Confidence 886654
No 51
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.56 E-value=9.8e-14 Score=146.74 Aligned_cols=165 Identities=11% Similarity=0.236 Sum_probs=142.1
Q ss_pred ccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhh
Q 003551 134 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 213 (811)
Q Consensus 134 ~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~ 213 (811)
+++.+++.+. -...+.++++++++|+.+.++ ++ .++..+++++.+++.++|++.++|+++|. .
T Consensus 119 ~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~~------------~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~ 181 (289)
T PRK13022 119 PQVGKELAQK---GLLALLVALVGILIYIAFRFE-WR------------FALGAIIALLHDVIITLGIFSLFQIEFDL-T 181 (289)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4555555543 334567888888888877653 32 28888999999999999999999999997 6
Q ss_pred hhhhhhhhhhhcccceehHHHHHHHhc---cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 003551 214 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 290 (811)
Q Consensus 214 ~~~~pfl~lgigvd~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a 290 (811)
+......++|+.+||.+++.+++++.. ++.+.++++.++.++...+++.|++|++++|+.+.+.+.+.++.|++...
T Consensus 182 siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~ 261 (289)
T PRK13022 182 VIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALALL 261 (289)
T ss_pred HHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 778888889999999999999998743 35789999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 003551 291 LAVLLDFLLQITAFVALIVFDFLRA 315 (811)
Q Consensus 291 ~~v~~~~~~~~t~~pall~l~~~r~ 315 (811)
+|++.+.+.++++.|+++.+..+|.
T Consensus 262 ~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 262 IGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999876554
No 52
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.55 E-value=3.3e-13 Score=142.78 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+..++...++++|+++|++++++.|++++.++.++++++..+++++|+|+++|+++|..++..+++++|++||++|++.
T Consensus 130 ~~~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~ 209 (292)
T PRK08578 130 SQFQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLT 209 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEe
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFS----RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 788 (811)
Q Consensus 713 ~~f~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs----~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~ 788 (811)
.++++.+++.+|++.++++. + +. ++ +||++|++||++. ..+.++.|. ..++..++++++.++++.+.++.
T Consensus 210 dri~~~~~~~~eai~~a~~~-~--i~-ts-lTTl~~~lpL~l~~~~~g~~~~~~fa-l~l~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 210 TRVLKRRGTFDESIKRAMRT-G--IT-MT-LTTIAAMAVLYIVSTIPQAEVLANIA-AVLIFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred hHHHHccCCHHHHHHHHHHH-H--HH-HH-HHHHHHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876667888999999854 3 43 43 6999999999865 467788874 33444578899999999999999
Q ss_pred hhCCCCc
Q 003551 789 VFGPPSR 795 (811)
Q Consensus 789 ~~~p~~~ 795 (811)
+++.+.+
T Consensus 284 ~~~~~~~ 290 (292)
T PRK08578 284 WYKTEGK 290 (292)
T ss_pred HHHhccc
Confidence 8865543
No 53
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.52 E-value=5e-13 Score=147.19 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+..+..+.++.+++++++++++++++ +.++++.++++..++.++|+|+++|.++|..++.++++++|++||+++++.
T Consensus 244 ~~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~ 321 (397)
T TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEe
Confidence 355677888999999999999999998 578888888999999999999999999999999999999999999999999
Q ss_pred HHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 787 (811)
Q Consensus 713 ~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll 787 (811)
.+++++ +++..+++.++.+++++|++.+. +||++++++|++.....++.|. ..++..++++++.++++.+.++
T Consensus 322 erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~-lTtlia~l~L~~~g~g~~~~fA-~tl~igii~s~~~sl~vtr~~~ 397 (397)
T TIGR01129 322 ERIKEELRLGKSVRQAIEAGFERAFSTIFDAN-ITTLIAALILYVFGTGPVKGFA-VTLAIGIIASLFTALVFTRLLL 397 (397)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 877753 34788999999999999999996 7999999999987767788874 4444567889999999988764
No 54
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.52 E-value=1.1e-13 Score=137.66 Aligned_cols=137 Identities=13% Similarity=0.187 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccce
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 229 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~ 229 (811)
.+.++++++++++.+.+| ++ .++..++.++.++++++|++.++|+++|. .+...+.+++|+++||.
T Consensus 52 ~l~~a~~lv~l~l~~~~r-~~------------~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~a 117 (192)
T TIGR00916 52 ALLIGLVLVLLYMLLRYE-WR------------GAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDT 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCe
Confidence 367777777777776655 32 16667778888899999999999999997 78888899999999999
Q ss_pred ehHHHHHHHh-c--cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003551 230 CILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 300 (811)
Q Consensus 230 ~~l~~~~~~~-~--~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~ 300 (811)
+++.+++++. + ++.+.++++.++.++.+++++.|++|++++|+...+.+.+.++.|++...++++.+++.+
T Consensus 118 Ivv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 118 VVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred EEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999874 3 578999999999999999999999999999999998888999999999999999998865
No 55
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.51 E-value=6.8e-13 Score=149.26 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
+..+..+.++++++++|++++++.++ +.++++.+++++.++.++|+|.++|+++|..++.++++++|++||+++.+..
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 55677888899999999999999988 4688888899999999999999999999999999999999999999999988
Q ss_pred Hhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003551 714 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 790 (811)
Q Consensus 714 ~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~ 790 (811)
+++++ +++..+++.++.+++++|++.+. +||++++++|.+.....++.|. .+++..++++++.++++.|+++.++
T Consensus 408 rIreel~~g~~~~~Ai~~~~~~~~~~Il~s~-lTTlia~l~L~~~g~g~i~~fA-itl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 408 RIREELREGRSLRSAIEAGFKRAFSTILDSN-ITTLIAAIILYALGTGPVKGFA-VTLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77753 45888999999999999999996 7999999999987766788874 3444567899999999999999955
No 56
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.47 E-value=2.4e-12 Score=150.47 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
+.....+...+++++++++.+.+.++. .++++.++++..++.++|+|.++|++||..++.++++.+|++||+++++..
T Consensus 275 ~~~~~~~~A~ii~~~lV~lfm~~~Y~~--~glia~iaL~~~v~~tl~~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~E 352 (758)
T PRK13023 275 DYASAAVLAALLAALVVGLFMVLSYGI--LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYE 352 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHhccCcEEEee
Confidence 344455566666666667666666653 577788888889999999999999999999999999999999999999987
Q ss_pred Hhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003551 714 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 790 (811)
Q Consensus 714 ~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~ 790 (811)
+++++ +++.++++.++.+++++|++.+. +||+++++||++.....++.|. .+++..++.+++.++++.|+++.++
T Consensus 353 rireel~~G~~~~~Av~~g~~~~~~~Il~s~-lTTlia~lpL~~~g~g~ik~FA-itliiGi~~S~~~al~vt~~l~~~~ 430 (758)
T PRK13023 353 RVREDRRKGYSVVQAMESGFYRALSTIVDAN-LTTLIAALVLFLLGSGTVHGFA-LTVAIGIGTTLFTTLTFTRLLIAQW 430 (758)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77653 45889999999999999999996 7999999999988888888874 4445567899999999999999988
Q ss_pred CCC
Q 003551 791 GPP 793 (811)
Q Consensus 791 ~p~ 793 (811)
...
T Consensus 431 ~~~ 433 (758)
T PRK13023 431 VRT 433 (758)
T ss_pred Hhh
Confidence 544
No 57
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.46 E-value=4.3e-12 Score=150.11 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhh
Q 003551 632 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 711 (811)
Q Consensus 632 ~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi 711 (811)
-.+..+....++.++++++.++++++++. .++++.++++..++.++|+|.++|.+||..++.++++++|++||+++.+
T Consensus 367 g~~~i~~~~~aliig~ilV~l~m~lfyr~--~glia~ial~~~vl~~l~~l~l~g~tLnl~~IaGiil~IGm~VD~~IVI 444 (855)
T PRK14726 367 GADSIAAGLVAGLIAAILVAALMIGFYGF--LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLI 444 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcceeHHHHHHHHHHHHhhhCceEEe
Confidence 34566777888888999898888888873 7888888999999999999999999999999999999999999999999
Q ss_pred hHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 712 THAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 788 (811)
Q Consensus 712 ~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~ 788 (811)
..+.+++ +++..+++.++.++++.|++.+. +||+++++||.+..+..++.|. .++...++.+++.++++.|+++.
T Consensus 445 ~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~-lTTlia~lpL~~~g~~~ikgFA-vtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 445 YERIREEEKTGHSLIQALDRGFSRALATIVDAN-VTILIAAVILFFLGSGAVRGFA-VTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777654 34888999999999999999996 8999999999999988899884 44445678999999999999999
Q ss_pred hhCCCC
Q 003551 789 VFGPPS 794 (811)
Q Consensus 789 ~~~p~~ 794 (811)
++.++.
T Consensus 523 ~~l~~~ 528 (855)
T PRK14726 523 VWLRRR 528 (855)
T ss_pred HHhccc
Confidence 875443
No 58
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.46 E-value=3.7e-12 Score=133.95 Aligned_cols=158 Identities=11% Similarity=0.080 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh
Q 003551 633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 633 ~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
.+..+.....+++|+++|++.+.+.|+ ++.++.++++++..+++++|++.++|+++|..+++++++.+|+++++++-+.
T Consensus 122 ~~~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~ 200 (297)
T PRK13021 122 QELAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIA 200 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEe
Confidence 356677888899999999999998887 8899999999999999999999999999999999999999999999999888
Q ss_pred HHhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 787 (811)
Q Consensus 713 ~~f~~~-----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll 787 (811)
.++++. +.+.+|++.+|..++.+|+++++ +||++|++||++...+..+.|... +++.+++|.+.++++-+.++
T Consensus 201 drire~~~~~~~~~~~e~i~~ai~~~lrr~l~Ts-lTt~l~llpL~l~G~~~~~~fA~~-li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 201 DRIRELLIAKPKLAIQEINNQAIVATFSRTMVTS-GTTLMTVGALWIMGGGPLEGFSIA-MFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred eHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 777643 23788999999999999999997 799999999999888888888434 44567889999999988777
Q ss_pred HhhCCC
Q 003551 788 SVFGPP 793 (811)
Q Consensus 788 ~~~~p~ 793 (811)
.+++.+
T Consensus 279 ~~~~~~ 284 (297)
T PRK13021 279 ELLGLS 284 (297)
T ss_pred HHHccC
Confidence 777543
No 59
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.43 E-value=4.7e-12 Score=131.40 Aligned_cols=142 Identities=13% Similarity=0.255 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhccc
Q 003551 148 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 227 (811)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd 227 (811)
...+.++.+++++|+.+.++ +| .++..++.++++++.+++++.++|+++|. .+.....+++|+.+|
T Consensus 101 ~~~~~la~i~i~l~l~~~f~-~r------------~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vd 166 (246)
T TIGR00966 101 VLALLAALVLILIYITVRFE-WR------------FALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIN 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhcc
Confidence 34466777777777766543 32 27888999999999999999999999997 778888899999999
Q ss_pred ceehHHHHHHHh-c--cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 228 NMCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITA 303 (811)
Q Consensus 228 ~~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~ 303 (811)
|++++.+++++. + ++.++.+++.++.++...+++.|++|++++|+.+.+.+.+.++.|++...+|++++.+.+++.
T Consensus 167 d~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~i 245 (246)
T TIGR00966 167 DTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIFI 245 (246)
T ss_pred CeEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999864 2 377899999999999999999999999999999988888999999999999999998887653
No 60
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.41 E-value=4.7e-12 Score=142.55 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccc
Q 003551 149 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 228 (811)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~ 228 (811)
...+++++++++|+++.++. .++..++.++++++.++|++.++|.++|+ +....-.+++|+++||
T Consensus 337 ~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~ 401 (498)
T PRK05812 337 IAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDA 401 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEec
Confidence 34678888888888877653 28888999999999999999999999997 6777778899999999
Q ss_pred eehHHHHHHH-hccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 229 MCILVHAVKR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 307 (811)
Q Consensus 229 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pal 307 (811)
.+++.+++++ .+++.+..+++.++.+++..+++.+++|++++|+.+.+.....++.|++...+|++++++.++++.|++
T Consensus 402 ~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l 481 (498)
T PRK05812 402 NVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRAL 481 (498)
T ss_pred eEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 457788999999999999999999999999999988876667899999999999999999999999999
Q ss_pred HHHHHhh
Q 003551 308 IVFDFLR 314 (811)
Q Consensus 308 l~l~~~r 314 (811)
+.+..+|
T Consensus 482 ~~~~~~~ 488 (498)
T PRK05812 482 VNLLYGR 488 (498)
T ss_pred HHHHHhc
Confidence 9865543
No 61
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.36 E-value=1.2e-11 Score=136.39 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhccc
Q 003551 148 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 227 (811)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd 227 (811)
+....++++++++|+++.+++. ++..++.++++++.++|++.++|.++|+ +....-.+++|+++|
T Consensus 251 ~~a~~ig~ilV~l~~~~~yr~~--------------gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD 315 (397)
T TIGR01129 251 IKAGLIGLVLVLVFMILYYRLF--------------GLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVD 315 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeee
Confidence 3457788888888888876632 7888899999999999999999999997 677777889999999
Q ss_pred ceehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 228 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 306 (811)
Q Consensus 228 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pa 306 (811)
|.+++.+++++. +++.++.+++.++.++++.+++.+++|++++|+.+.+...+.++.|++...++++++++.++++.+.
T Consensus 316 ~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~ 395 (397)
T TIGR01129 316 ANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRL 395 (397)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999874 5678899999999999999999999999999998887777789999999999999999999998776
Q ss_pred H
Q 003551 307 L 307 (811)
Q Consensus 307 l 307 (811)
+
T Consensus 396 ~ 396 (397)
T TIGR01129 396 L 396 (397)
T ss_pred h
Confidence 5
No 62
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.35 E-value=3.1e-11 Score=147.05 Aligned_cols=178 Identities=17% Similarity=0.068 Sum_probs=139.8
Q ss_pred CCeEEEEeccccH-HHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHH
Q 003551 124 KNLTLAFSSESSI-EEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 124 ~~~~v~~~~~~s~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~ 202 (811)
.+++++..+..-+ .++........+..+.++.+.|++.+.+.+++.. -++..++++++.++..+|+|
T Consensus 943 ~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~------------~a~iv~l~v~~i~v~v~G~M 1010 (1145)
T TIGR00918 943 FGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPW------------TAGLIVLVLALMTVELFGMM 1010 (1145)
T ss_pred cCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH------------HHHHHHHHHHHHHHHHHHHH
Confidence 3455555444433 2333332222233345555666666666666542 26677788888899999999
Q ss_pred hhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCCh-H
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-A 281 (811)
Q Consensus 203 ~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~-~ 281 (811)
++.|+++|. ++.+...+.+|+|||++.|+.++|... ..+.++|+.+|++++|.|++.+++|+++|.+++++++.. .
T Consensus 1011 ~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~ 1087 (1145)
T TIGR00918 1011 GLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFI 1087 (1145)
T ss_pred HHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 999999997 667777888999999999999999853 235799999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003551 282 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 316 (811)
Q Consensus 282 ~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~~ 316 (811)
++.|+...++.|+++++-.+.++|.+|++.+.+.+
T Consensus 1088 ~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp~~~ 1122 (1145)
T TIGR00918 1088 VRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEPE 1122 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 79999999999999999999999999999876643
No 63
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.33 E-value=6.1e-11 Score=141.10 Aligned_cols=149 Identities=12% Similarity=0.184 Sum_probs=115.6
Q ss_pred HHHHHHHH--HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhc
Q 003551 640 LINLAIAI--GAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV 717 (811)
Q Consensus 640 ~~~~~la~--~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~ 717 (811)
....++++ +++|+++..-+. +++..+++++.++.++|+|.++|++||..++.++++++|++||++|.+..+.++
T Consensus 912 ilA~lIglaLVlIFMlL~YRf~----GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIRE 987 (1403)
T PRK12911 912 IISVCLGLAVLIVLMSVYYRFG----GVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIRE 987 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHH
Confidence 33444444 444444444333 444555555666777899999999999999999999999999999999876665
Q ss_pred c---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003551 718 S---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 718 ~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~ 794 (811)
+ +++..+++.++.+++.+||+.+. +||++|++||.+.....++.|. ..+++.+++|++.++++.|+++.++..+.
T Consensus 988 ELr~Gksl~eAI~~G~~~afs~ILdTn-LTTLIA~lPLf~fGtG~vkgFA-vTLiIGII~SmftALfVtP~Ll~l~l~~~ 1065 (1403)
T PRK12911 988 EYLLSRSLSESVEAGYKKAFSAIFDSN-LTTILASALLLMLDTGPIKGFA-LTLIIGIFSSMFTALFMTKFFFMIWMNKT 1065 (1403)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 45888999999999999999996 7999999999766666678774 44445678999999999999999886543
No 64
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.33 E-value=1.2e-10 Score=115.21 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccch
Q 003551 629 FEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFC 708 (811)
Q Consensus 629 ~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ 708 (811)
...-.+..+..+..++++++++++.+++.|+ ++.++..+++++.-++.++|+|.++|+++|..++.++++.+|.+||++
T Consensus 23 p~~g~~~~~~~~~a~~~al~~i~iyi~~rf~-~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~ 101 (189)
T PF02355_consen 23 PTLGSDLLKSALIALIIALIAILIYIFLRFR-WRFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDN 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcc
Confidence 3444567778888999999999988888887 445666666777778889999999999999999999999999999999
Q ss_pred hhhhHHhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 709 VHITHAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFL 783 (811)
Q Consensus 709 ihi~~~f~~~-----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~ll 783 (811)
+-+..+.+++ +++.++++.++.+++....+.+. +||++.+++|.+......+.|...+. ..++.|++.++++-
T Consensus 102 IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~l~-iGvi~~~~ss~~ia 179 (189)
T PF02355_consen 102 IVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALTLI-IGVIIGTYSSLFIA 179 (189)
T ss_dssp HHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9998777765 34778999999999999888886 79999999999888888888854444 45789999999999
Q ss_pred HHHHHhhC
Q 003551 784 PVVLSVFG 791 (811)
Q Consensus 784 Pvll~~~~ 791 (811)
+.++.++.
T Consensus 180 ~~l~~~l~ 187 (189)
T PF02355_consen 180 RPLLYWLV 187 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 65
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.33 E-value=4e-11 Score=135.41 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHhhhhcccchhhhh
Q 003551 636 WRTALINLAIAIGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAIL-KIQLNAVSVVNLVMAVGIAVEFCVHIT 712 (811)
Q Consensus 636 ~~~~~~~~~la~~~v~iv~~l~~~s~--~~~~~~~~~i~~~~~~~~g~m~l~-gi~Ln~~s~i~~~~~iGi~Vd~~ihi~ 712 (811)
-++.+.+...|+++.++++++++... +.++++.++++..++.++|+|.++ |.+||..++.++++++|++||..|-+.
T Consensus 435 G~~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ 514 (604)
T PRK12933 435 GAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIF 514 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEe
Confidence 34445555555555555444444333 568888888999999999999998 999999999999999999999999888
Q ss_pred HHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003551 713 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 789 (811)
Q Consensus 713 ~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~ 789 (811)
.+.+++ +++..+++..+.++...+++.+. +||++.+++|.+..+..++.|... +...++.+++.++++.|+++.+
T Consensus 515 ERIrEel~~G~s~~~Ai~~G~~~a~~~Ildan-lTTlia~lpL~~~Ggg~ikgFAvT-L~iGIl~S~ftAi~vtr~l~~~ 592 (604)
T PRK12933 515 ERIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN-FTTMITAVVLYSIGNGPIQGFALT-LGLGLLTSMFTGIFASRALINL 592 (604)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 45888999999999999999996 799999999998887788888544 4445789999999999999988
Q ss_pred hCCC
Q 003551 790 FGPP 793 (811)
Q Consensus 790 ~~p~ 793 (811)
+-..
T Consensus 593 ~~~~ 596 (604)
T PRK12933 593 VYGR 596 (604)
T ss_pred Hhcc
Confidence 7543
No 66
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.33 E-value=7.7e-11 Score=124.87 Aligned_cols=148 Identities=11% Similarity=0.180 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccc
Q 003551 149 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 228 (811)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~ 228 (811)
..+.++.+++++|+.+.++++ +.++..+++++..++.++|++.++|+++|. .+...-..++|+.+||
T Consensus 138 ~al~~alilI~i~l~l~F~s~------------~~~l~~~lal~~dv~~tlg~~~l~g~~ln~-~~i~gll~iiG~sVdd 204 (292)
T PRK08578 138 KAVGFAFIGMAVVVFLIFRTP------------VPSLAVILSAFSDIIIALALMNLFGIELSL-ATVAALLMLIGYSVDS 204 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHHHHHheeecC
Confidence 456788888888888776533 337788889999999999999999999997 4555556789999999
Q ss_pred eehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccC----CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 229 MCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPACRVFSMFAALAVLLDFLLQITAF 304 (811)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~----~~~~~~~f~~~~a~~v~~~~~~~~t~~ 304 (811)
.+++.+++++.. .+.++++.+++++. ..+++|++++|+...+. +.+.+|.|++...+|++++++.++.+.
T Consensus 205 ~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~ 278 (292)
T PRK08578 205 DILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLN 278 (292)
T ss_pred cEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997643 57888998888543 45679999999977543 578999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 003551 305 VALIVFDFLRA 315 (811)
Q Consensus 305 pall~l~~~r~ 315 (811)
++++.+..+|+
T Consensus 279 ~~~l~~~~~~~ 289 (292)
T PRK08578 279 AGILRWYKTEG 289 (292)
T ss_pred HHHHHHHHhcc
Confidence 99998876554
No 67
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.32 E-value=2.9e-11 Score=136.56 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhc-ccccchhhhhhhhhhhhhhcccc
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDN 228 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~-g~~~~~i~~~~~pfl~lgigvd~ 228 (811)
..+++++++++|+...+++. |+...+.+++.++.++|++.++ |.++|. +......+.+|+.||+
T Consensus 445 A~iig~vlV~lFm~~~Yr~~--------------glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDa 509 (604)
T PRK12933 445 ALALGMGITLLFMALWYRRL--------------GWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDT 509 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccC
Confidence 35666677777776544432 7888899999999999999998 999997 6667777889999999
Q ss_pred eehHHHHHHHh-ccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 229 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 307 (811)
Q Consensus 229 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pal 307 (811)
.+++.++.+++ +++.++.+++..+.+++..+++.+++||+++|+++.+....++|.|++...+|++.+++.++++.|++
T Consensus 510 nIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l 589 (604)
T PRK12933 510 NVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRAL 589 (604)
T ss_pred cEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 56788999999999999999999999999999988777667799999999999999999999999999
Q ss_pred HHHHHhhh
Q 003551 308 IVFDFLRA 315 (811)
Q Consensus 308 l~l~~~r~ 315 (811)
+.+..++.
T Consensus 590 ~~~~~~~~ 597 (604)
T PRK12933 590 INLVYGRD 597 (604)
T ss_pred HHHHhccc
Confidence 88765443
No 68
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=99.21 E-value=5.8e-10 Score=123.19 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhhhhcCcccccccceeeehhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 003551 601 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLD-----IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 675 (811)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~ 675 (811)
.+++++++..++. | ..|.+......++... ..+..+....++++++++++++.++.+...+.+.+++++.+
T Consensus 224 ~~eA~~La~~L~~--G--aLP~~~~i~~~~~v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~v 299 (417)
T PRK08343 224 KEEAKELYIHLRS--G--ALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSEV 299 (417)
T ss_pred HHHHHHHHHHHhc--c--ccCCCeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655532 1 2333333333333322 22334455666666777777766666555554444445566
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q 003551 676 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCF 754 (811)
Q Consensus 676 ~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~~-~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~f 754 (811)
+.++|+|.++|.+||..++.++++++|++||+.|.+..+.+++.. +.++++..++++..+||+.+. +||++|++||++
T Consensus 300 ~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~~~~~~~~~~ai~~g~~~a~~~Il~t~-lTTiia~lpL~~ 378 (417)
T PRK08343 300 IIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLHEGKVPSRKVFLSRIKRAFFIIFAAA-ATTIAAMSPLAV 378 (417)
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHHHhCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 778999999999999999999999999999999988866554443 678899999999999999996 799999999998
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 755 SRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 787 (811)
Q Consensus 755 s~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll 787 (811)
.....++.|. .++++|++.+.++.-.++
T Consensus 379 ~g~g~ikgfA-----itliiGii~s~~iTrp~~ 406 (417)
T PRK08343 379 MGLGDLKGFA-----ITTILGVLIGVLITRPAY 406 (417)
T ss_pred hccccccchH-----HHHHHHHHHHHHHHHHHH
Confidence 7655566552 233445555555444433
No 69
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.19 E-value=9.2e-10 Score=108.91 Aligned_cols=152 Identities=17% Similarity=0.267 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhccc
Q 003551 148 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 227 (811)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd 227 (811)
...+.++++++++|+.+.++ + ..++.+++..+..++.++|++.++|+++|. .....-.+++|.++|
T Consensus 34 ~~a~~~al~~i~iyi~~rf~-~------------~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~~iaall~~iG~sVd 99 (189)
T PF02355_consen 34 LIALIIALIAILIYIFLRFR-W------------RFALAAIIALIHDVLITLGIFSLFGIELTL-PSIAALLTIIGYSVD 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-H------------HHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-c------------chHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHHHh
Confidence 34567888888888877543 1 137778888888899999999999999997 667777889999999
Q ss_pred ceehHHHHHHHh-c--cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 228 NMCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 304 (811)
Q Consensus 228 ~~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~ 304 (811)
|.+++.++.+|+ + ++.+.++++.++++++...++.|++|+.++.+.+.+..-..++.|++...+|++.+...++.+-
T Consensus 100 ~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia 179 (189)
T PF02355_consen 100 DNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIA 179 (189)
T ss_dssp HHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 2 4788999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003551 305 VALIVFDFL 313 (811)
Q Consensus 305 pall~l~~~ 313 (811)
++++.+..+
T Consensus 180 ~~l~~~l~~ 188 (189)
T PF02355_consen 180 RPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 998877654
No 70
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.19 E-value=1e-09 Score=115.68 Aligned_cols=163 Identities=13% Similarity=0.191 Sum_probs=138.5
Q ss_pred cccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchh
Q 003551 133 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 212 (811)
Q Consensus 133 ~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i 212 (811)
++++.+|+.+.+ ...+.++.+++++|+.+.++ ++ .++..+++++..++.++|.+.++|.++|.
T Consensus 117 gp~~g~~~~~~~---~~a~~~ali~I~lyl~~rF~-~~------------~~l~al~al~~dv~~~l~~l~l~g~~l~~- 179 (297)
T PRK13021 117 GPQVGQELAEQG---GLALLVAMLCILGYLSYRFE-WR------------LASGALFALVHDVIFVLAFFALTQMEFNL- 179 (297)
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-
Confidence 356666666643 34577888888888877554 32 37778899999999999999999999996
Q ss_pred hhhhhhhhhhhhcccceehHHHHHHHhc---cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 003551 213 IMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 289 (811)
Q Consensus 213 ~~~~~pfl~lgigvd~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~ 289 (811)
...+.-..++|+.++|.+++.+++++.. ++.+.+|++.++.++.-.+++.|++|++++.+.+.+...+.++.|++..
T Consensus 180 ~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~~fA~~l 259 (297)
T PRK13021 180 TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAM 259 (297)
T ss_pred HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6667778889999999999999999743 4678999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003551 290 ALAVLLDFLLQITAFVALIVFDF 312 (811)
Q Consensus 290 a~~v~~~~~~~~t~~pall~l~~ 312 (811)
..|++.+.+.++.+-++++..+.
T Consensus 260 i~Gli~gt~sslfva~pl~~~~~ 282 (297)
T PRK13021 260 FIGILTGTFSSISVGTSLPELLG 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888887664
No 71
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.18 E-value=3.6e-09 Score=129.83 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHhhhhcCcccccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 003551 599 NSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDL 678 (811)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~ 678 (811)
+..+..|.+.++...+.+.+.+..|......++......+......+++.++++++++.++|+.++++.++++.+.....
T Consensus 146 es~~~v~~~v~~~~~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~i~a~lpL~t~~~s~~~a 225 (937)
T COG2409 146 ESVEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSVITAFLPLITVGLSLLVA 225 (937)
T ss_pred HHHHHHHHHhcccCCCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777766654444667777777766666665566667777788889999999999999999999988887777666
Q ss_pred HHHHHHh----cccchhHHH-HHHHHhhhhcccchhhhhHHhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003551 679 MGVMAIL----KIQLNAVSV-VNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVI 750 (811)
Q Consensus 679 ~g~m~l~----gi~Ln~~s~-i~~~~~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~ 750 (811)
.|...++ +..++..+. ....+.+|.++||++.+..+|+++ +.++++++..+++..|..|..++ .|.+.++.
T Consensus 226 ~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg-~tV~~a~~ 304 (937)
T COG2409 226 QGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSG-LTVAIALL 304 (937)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhh-hHHHHHHH
Confidence 5555533 233444443 455578999999999999999864 34899999999999999999987 69999999
Q ss_pred HhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 003551 751 VLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 797 (811)
Q Consensus 751 ~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~~~ 797 (811)
.|.|++.+.++.. .......+.++.+.++.++|++++++|++..+.
T Consensus 305 ~l~~a~~~~~~s~-g~~~ai~V~va~l~slTllPAll~llg~~~~~~ 350 (937)
T COG2409 305 GLSFARLPFLKTL-GIAAAIGVAVAVLAALTLLPALLALLGRRGFWP 350 (937)
T ss_pred HHHhcccchhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcC
Confidence 9999999999886 233344567788999999999999999887444
No 72
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.16 E-value=1.3e-09 Score=133.07 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=132.9
Q ss_pred cHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhh
Q 003551 135 SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 214 (811)
Q Consensus 135 s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~ 214 (811)
...|........-+..++++.+.|++...+.+.+.. .++..+++++.-.+..+|+|.+.|+++|+ ++
T Consensus 635 ~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~------------~~~~~~~~i~~i~~~v~G~m~~~g~~l~~-vs 701 (798)
T PF02460_consen 635 IFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPR------------SSLIVTLSILSIDVGVIGFMSLWGVDLDP-VS 701 (798)
T ss_pred hhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccch------------hHHHHHHHHHHHHHHHHHhhhccccCcch-HH
Confidence 344444444443444567777777766666555543 25555666666667788999999999998 67
Q ss_pred hhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 003551 215 EVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVL 294 (811)
Q Consensus 215 ~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~ 294 (811)
.+...+.+|++||++.|+..+|.+.... ++.+|+.++++++|.|++-.+++|++|.+.+++++.+.++.|.-...+.++
T Consensus 702 ~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~~~ff~~~~l~~~ 780 (798)
T PF02460_consen 702 MVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIFRVFFKTVFLVII 780 (798)
T ss_pred HHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999875533 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003551 295 LDFLLQITAFVALIVFD 311 (811)
Q Consensus 295 ~~~~~~~t~~pall~l~ 311 (811)
++++-.+.++|++|++.
T Consensus 781 ~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 781 FGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999863
No 73
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.7e-09 Score=124.31 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhh-
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT- 712 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~- 712 (811)
...++...++.=..++|.+++++|+.|+++++++++++++++...|-+|..+|++.|.+|+-++.+++|+-||.++-++
T Consensus 331 ~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~~~lPLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vE 410 (1027)
T COG3696 331 KAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVE 410 (1027)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhcccchheeeeeeecceEEeeh
Confidence 3445667778888899999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHhhc------cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 713 HAFSV------SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFL 783 (811)
Q Consensus 713 ~~f~~------~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~---~~~~~~f~f~~~~~~i~~g~~~~L~ll 783 (811)
..|++ ....+-+.+.+|.+++++|+++|. +-..+.|+|+..-. ..+|....+... ..++.+++.++++.
T Consensus 411 N~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~-lII~vvf~PIFtL~GvEGklF~Pma~t~~-~al~~a~llsiT~i 488 (1027)
T COG3696 411 NAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGL-LIITVVFLPIFTLTGVEGKLFAPLAFTKT-YALLAALLLSITFI 488 (1027)
T ss_pred hHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhh-hhheeehhhhheeccccccccchHHHHHH-HHHHHHHHHHHHHH
Confidence 23332 123667889999999999999995 56667888876444 455555533333 34577889999999
Q ss_pred HHHHHhhCC
Q 003551 784 PVVLSVFGP 792 (811)
Q Consensus 784 Pvll~~~~p 792 (811)
|++..++=.
T Consensus 489 Pal~~~~i~ 497 (1027)
T COG3696 489 PALMAYLIR 497 (1027)
T ss_pred HHHHHHHhc
Confidence 999998844
No 74
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.09 E-value=4.8e-08 Score=116.33 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhccC--CCHHHHHHHHHHHhhHHH
Q 003551 660 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGASV 737 (811)
Q Consensus 660 s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~~--~~~~~~~~~al~~~g~pv 737 (811)
.++.+++.+++..++++..+|++.|.|.+.|.+..+..-+.+|+|||++=-+.++.++.. .+.++|+.+++.+.|.+|
T Consensus 282 Kp~lai~g~l~p~mA~~ta~G~l~~~G~~f~sI~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SI 361 (868)
T KOG1934|consen 282 KPILAILGVLSPVMAIITAFGLLFWCGFPFNSIVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSI 361 (868)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcceeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCee
Confidence 356677777778888888999999999999999999999999999999998889888754 378999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 003551 738 FSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795 (811)
Q Consensus 738 ~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~ 795 (811)
..++ +|-++.|..-++++.+..+.| .....+.+++.++.-+++..+++.+.|++..
T Consensus 362 tITS-lTn~lsFgiG~~T~~p~v~~F-C~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~ 417 (868)
T KOG1934|consen 362 TITS-LTNVLSFGIGAITPTPAVQIF-CLYTAVAILFDFIYQLTFFAAVMVITGRREA 417 (868)
T ss_pred eHHH-HHHHHHHHhccCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 9997 899999999999999999986 3334456789999999999999999987543
No 75
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=98.98 E-value=1.4e-08 Score=97.42 Aligned_cols=129 Identities=22% Similarity=0.395 Sum_probs=109.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHhhhhcccchhhhhHHhhccC--CCHHHHHHHHHHHhhHH
Q 003551 660 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV-VNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGAS 736 (811)
Q Consensus 660 s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~-i~~~~~iGi~Vd~~ihi~~~f~~~~--~~~~~~~~~al~~~g~p 736 (811)
+++.++..++.+.++++..+|+.++.|++++.+.. +...+.+|+++|+..++.+++.+.. .+.++|+.+|+++.|++
T Consensus 5 ~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~s 84 (153)
T PF12349_consen 5 RFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPS 84 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHH
Confidence 35667777777888888889999999999999987 6777999999999999999998764 35689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC
Q 003551 737 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYL-ALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 737 v~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~-~~i~~g~~~~L~llPvll~~~~ 791 (811)
++.+. +|+++++...++++.+..+.| .++. ..+++.++..+++.|++|++--
T Consensus 85 i~~t~-l~~~~af~~~~~~~~~~l~~F--c~faa~~l~~d~~l~~tff~avLsld~ 137 (153)
T PF12349_consen 85 ILLTS-LTEIVAFLIGAFSPVPALREF--CLFAALALLFDFLLQLTFFPAVLSLDL 137 (153)
T ss_pred HHHHH-HHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 799999998889999888886 4444 3467889999999999999763
No 76
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.93 E-value=8.1e-08 Score=101.06 Aligned_cols=170 Identities=14% Similarity=0.259 Sum_probs=142.0
Q ss_pred cccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchh
Q 003551 133 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 212 (811)
Q Consensus 133 ~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i 212 (811)
++.+.+|+.+.. +..+.++++.+++|+++-+ ++-.+++++++.+-=++.++|++.++|+++|+
T Consensus 125 gp~vg~eL~~~~---~~Al~~alv~I~iYV~~RF-------------e~~~a~aaI~al~hDvii~~g~~slfgiE~~l- 187 (305)
T COG0341 125 GPTVGKELARQG---LLALLLALVGILIYVFFRF-------------EWRFALAAILALLHDVIITLGFFSLFGIEFNL- 187 (305)
T ss_pred CcchHHHHHHHH---HHHHHHHHHHHHHhhheee-------------ehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-
Confidence 366778887753 4557788888888886533 22238889999999999999999999999997
Q ss_pred hhhhhhhhhhhhcccceehHHHHHHHhc---cCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 003551 213 IMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 289 (811)
Q Consensus 213 ~~~~~pfl~lgigvd~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~ 289 (811)
.+...-..++|=.+||.+++.+|.||.. +..+..|.+..++.++-.-...|++|+.++.+.+.+..-+.+++|++..
T Consensus 188 ~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~l 267 (305)
T COG0341 188 ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALAL 267 (305)
T ss_pred HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 5566667788999999999999999832 4667779999999999999999999999998888777779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 003551 290 ALAVLLDFLLQITAFVALIVFDFLRAEDKR 319 (811)
Q Consensus 290 a~~v~~~~~~~~t~~pall~l~~~r~~~~r 319 (811)
-+|++.+..-++.+-++++.+..+|+++++
T Consensus 268 lvGii~gtySSifiA~pll~~~~~~~~~~~ 297 (305)
T COG0341 268 LVGIIAGTYSSIFIAAPLLLLLGKRREKKK 297 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHhhcc
Confidence 999999999999999999998877765443
No 77
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.82 E-value=1.1e-07 Score=99.95 Aligned_cols=162 Identities=12% Similarity=0.213 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 634 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 634 ~i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
++.+..+..+++|++.|.+-..+-|+-.. ++-++++...=++.++|+|.++|+++|..++..+++.+|.|+++++-+.-
T Consensus 131 eL~~~~~~Al~~alv~I~iYV~~RFe~~~-a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvfD 209 (305)
T COG0341 131 ELARQGLLALLLALVGILIYVFFRFEWRF-ALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVFD 209 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeehHH-HHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEEh
Confidence 45566777778888777777766665443 66666666666777899999999999999999999999999999998875
Q ss_pred Hhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 714 AFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 788 (811)
Q Consensus 714 ~f~~~-----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~ 788 (811)
+-++. +.+..|.+..++..+..-...++ +||++..++|.+...+..+.|...+++ .++.|...++++-+.++.
T Consensus 210 RIREn~r~~~~~~~~~iin~si~qTlsRti~Ts-~ttll~~~~l~~fgg~~l~~fa~~llv-Gii~gtySSifiA~pll~ 287 (305)
T COG0341 210 RIRENLRKYRRETLREIINTSINQTLTRTINTS-VTTLLVVVALLLFGGGSLKDFALALLV-GIIAGTYSSIFIAAPLLL 287 (305)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Confidence 55542 12556888889888888777775 689999888887777888888545443 568899999999999999
Q ss_pred hhCCCCcccc
Q 003551 789 VFGPPSRCML 798 (811)
Q Consensus 789 ~~~p~~~~~~ 798 (811)
+++.+.++.+
T Consensus 288 ~~~~~~~~~~ 297 (305)
T COG0341 288 LLGKRREKKK 297 (305)
T ss_pred HHHHhHhhcc
Confidence 8876554433
No 78
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.81 E-value=1.1e-07 Score=105.44 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=117.4
Q ss_pred CCeEEEEeccccHHHHHhhhccc-chHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHH
Q 003551 124 KNLTLAFSSESSIEEELKRESTA-DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 124 ~~~~v~~~~~~s~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~ 202 (811)
.++++.. ++.+...+.+.... .+....++++++++|+++.++.+ .+++...+..++.++..+|++
T Consensus 241 ~~~~i~~--~~~v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~------------~~i~~iaL~~~~~v~~~lg~l 306 (417)
T PRK08343 241 VKLDIEG--SGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREP------------RIALPMVITSLSEVIIILGFA 306 (417)
T ss_pred CCeEEEE--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 34444444444322 22335566666666666655432 112222233456678889999
Q ss_pred hhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHH
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 282 (811)
Q Consensus 203 ~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~ 282 (811)
.++|.++|+ +....-.+.+|++||+.+++.++.++..+ .+.++++..+++++..+++.+++|++++|+.+.+.....+
T Consensus 307 ~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~i 384 (417)
T PRK08343 307 ALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDL 384 (417)
T ss_pred HHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999997 67777788999999999999987765422 3678889999999999999999999999998877766779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003551 283 RVFSMFAALAVLLDFLLQITAF 304 (811)
Q Consensus 283 ~~f~~~~a~~v~~~~~~~~t~~ 304 (811)
|.|++...+|++++.+++=-++
T Consensus 385 kgfAitliiGii~s~~iTrp~~ 406 (417)
T PRK08343 385 KGFAITTILGVLIGVLITRPAY 406 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998755444433
No 79
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.80 E-value=6.3e-09 Score=121.34 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=142.1
Q ss_pred CCCeEEEEeccccHHHHHhhhcccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHH
Q 003551 123 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 123 ~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~ 202 (811)
.+.+++.+..-..-++++++....|.....++-..+...+.+ .-+.+...++++..+.++...++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i------------~t~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWI------------YTGSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEE------------ecCcHHHHHHHHHHHHHHhhHHHhhh
Confidence 456667666666677888888888877655444443332221 11345568888999999999998888
Q ss_pred h-hcccccchhhhhhhhhhhhhhcccceehHHHHHHHhc-------------------cCCCHHHHHHHHHHhhhhHHHH
Q 003551 203 S-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 262 (811)
Q Consensus 203 ~-~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~si~~ 262 (811)
. .+|+.+-+++..+.-++++|||.||.|++..+|+|.. .....+......+.+...++++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 5 5678887777788889999999999999999994310 0123456778889999999999
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003551 263 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 315 (811)
Q Consensus 263 tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~ 315 (811)
|++|++.+|.....++.+.+|.|+++++..+.+++...++++||..++..++.
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~~ 503 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRLF 503 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999888766553
No 80
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.78 E-value=1.2e-07 Score=106.99 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccce
Q 003551 150 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 229 (811)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~ 229 (811)
.-+++++++++|+.+..| ..|+.+.+...+.++..+|++.++|.++++ +...--.+.+|++||.-
T Consensus 348 Agl~g~~~V~vfm~~~Yr--------------~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaN 412 (506)
T COG0342 348 AGLIGLALVAVFMLLYYR--------------LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDAN 412 (506)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhccccc
Confidence 345666777777666544 128888888888999999999999999997 66777788999999999
Q ss_pred ehHHHHHHH-hccCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003551 230 CILVHAVKR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 308 (811)
Q Consensus 230 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~~t~~pall 308 (811)
+++.++.++ .+.+.+..+++..+++++..+|+=+.+||+++-.++.....-++|-|++..++|++.+++.++++.=.++
T Consensus 413 VlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~ 492 (506)
T COG0342 413 VLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLL 492 (506)
T ss_pred EEeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999997 4678999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhhh
Q 003551 309 VFDFLRA 315 (811)
Q Consensus 309 ~l~~~r~ 315 (811)
.+..++.
T Consensus 493 ~~~~~~~ 499 (506)
T COG0342 493 NLLVGRR 499 (506)
T ss_pred HHHhccc
Confidence 7776554
No 81
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.73 E-value=5.2e-07 Score=102.00 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHH
Q 003551 635 IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHA 714 (811)
Q Consensus 635 i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~ 714 (811)
..+..+....+++++|++++++.++ ..+++..+.+..-.+.++|.|.++|.+|+.-.+.++++.||++||.-+-+..+
T Consensus 341 ~i~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ER 418 (506)
T COG0342 341 SIKAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFER 418 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHH
Confidence 3456667777888888888888887 55777777777777788899999999999999999999999999999988888
Q ss_pred hhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003551 715 FSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 715 f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~ 791 (811)
.+++ +++...++...+++..+.|+-+. +||+++.++|........+-|.+.+. +.++.+++.++++-=.++.++-
T Consensus 419 IrEElr~G~s~~~ai~~G~~rAf~tI~DsN-~TTlia~~~L~~~GtG~vKGFA~Tl~-lGi~~smfta~~~tr~l~~~~~ 496 (506)
T COG0342 419 IREELRNGKSVLSAIDAGFKRAFSTILDSN-ATTLIAAAILFALGTGPVKGFAVTLI-LGILTSMFTAIPVTRLLLNLLV 496 (506)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhccCCchHHHHHHH-HHHHHHhhhhHHHHHHHHHHHh
Confidence 7765 34778899999999999999997 79999999998888778888854444 4578899999888888887775
Q ss_pred CCCc
Q 003551 792 PPSR 795 (811)
Q Consensus 792 p~~~ 795 (811)
+...
T Consensus 497 ~~~~ 500 (506)
T COG0342 497 GRRR 500 (506)
T ss_pred cccc
Confidence 5433
No 82
>COG4258 Predicted exporter [General function prediction only]
Probab=98.54 E-value=3.8e-06 Score=92.51 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhH
Q 003551 635 IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI-VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 713 (811)
Q Consensus 635 i~~~~~~~~~la~~~v~iv~~l~~~s~~~~~~~~~~i~~~-~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~ 713 (811)
+.++.-+.-..+++.+.+++++.|||++..++-.+++.+. ..++...|..+| ++..+|.+...-.||.+|||+||+..
T Consensus 254 ~~~d~~~lg~as~~giilLll~vfRS~RvllLgvls~gig~laglvAt~laFg-~lH~lTl~fg~slIGeAvDYsI~yfv 332 (788)
T COG4258 254 AKQDISTLGVASLLGIILLLLAVFRSLRVLLLGVLSIGIGALAGLVATLLAFG-ELHLLTLVFGMSLIGEAVDYSIYYFV 332 (788)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHhchhHHHHHHHHhhHHHHHHHHHHHHHHh-hHhHHHHHhhhhheeecccceeeehh
Confidence 3344444344556777777788899999988877777544 456777888887 67788888889999999999999875
Q ss_pred HhhccCC--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 003551 714 AFSVSSG--DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMY-LALVLLGFLHGLVFLPVVLS 788 (811)
Q Consensus 714 ~f~~~~~--~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~-~~~i~~g~~~~L~llPvll~ 788 (811)
..+..++ |+.+. .++.-..+..+ .+||++|+..+.|++++..+.. .++ +..+..+.+...+++|-++.
T Consensus 333 ~h~~pG~~~dp~rs----aaev~paL~la-llTtvlayatmlfs~fpgLrQL--a~faivGL~aAaltvrfllP~L~~ 403 (788)
T COG4258 333 EHMVPGNDVDPWRS----AAEVRPALLLA-LLTTVLAYATMLFSPFPGLRQL--AIFAIVGLLAAALTVRFLLPWLCR 403 (788)
T ss_pred hccCCCCCCChhHH----HHHhhHHHHHH-HHHHHHHHHHHHhcCChhHHHH--HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 4444332 33332 55566666666 4899999999999999999886 333 23456778888999998764
No 83
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=98.39 E-value=3.4e-06 Score=95.84 Aligned_cols=119 Identities=19% Similarity=0.327 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhcccchhH-HHHHHHHhhhhcccchhhhhHHhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003551 669 LVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLV 747 (811)
Q Consensus 669 ~~i~~~~~~~~g~m~l~gi~Ln~~-s~i~~~~~iGi~Vd~~ihi~~~f~~~~~~~~~~~~~al~~~g~pv~~~~~ltt~~ 747 (811)
+.+.++.+.-+|+-.|+||.+|+. |.+...+++|++||+---+.|+|.+..+. ++++.+-++++|.+|+.++ +.+++
T Consensus 449 llv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~ts-inni~ 526 (1143)
T KOG1935|consen 449 LLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLTS-INNIL 526 (1143)
T ss_pred hhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHHH-hhhHH
Confidence 344455555679999999999997 45888899999999999899999987544 7899999999999999998 69999
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003551 748 GVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 790 (811)
Q Consensus 748 g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~ 790 (811)
+|+.-++.+.+..|.| ..-...++.+-++..|++.|+++++=
T Consensus 527 aF~~aallPIPALrsF-clQaaIvl~fnfia~llifPAiisiD 568 (1143)
T KOG1935|consen 527 AFLMAALLPIPALRSF-CLQAAIVLTFNFIAVLLIFPAIISID 568 (1143)
T ss_pred HHHHHhhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999987 33344456788899999999999964
No 84
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=97.85 E-value=0.00019 Score=84.04 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhhhhcccchhhhhHHhhcc--CCCHHHHHHHHHHHhhHHHH
Q 003551 661 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--SGDKNQRMKEALGTMGASVF 738 (811)
Q Consensus 661 ~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~~~~iGi~Vd~~ihi~~~f~~~--~~~~~~~~~~al~~~g~pv~ 738 (811)
++.++.-++++.++++..+|++.++|++++.+.-+...+.++++||+.--+.+.-... ..+.++|+.+++.+.|++|+
T Consensus 90 ~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSIt 169 (886)
T TIGR00920 90 YILGIAGLFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTIT 169 (886)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhcccee
Confidence 4566777788888999999999999999999988888899999999987665542122 23788999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCC
Q 003551 739 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYL-ALVLLGFLHGLVFLPVVLSVFGP 792 (811)
Q Consensus 739 ~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~-~~i~~g~~~~L~llPvll~~~~p 792 (811)
.++ +|-.+.|.+=++++.+-.+.| -++. +.+++-++.-+.++|++|++.+.
T Consensus 170 lts-lte~l~F~vGtls~mPAV~~F--c~ya~vAVl~nyllQmTfF~A~LsL~~~ 221 (886)
T TIGR00920 170 LDT-VVETLVIGVGTMSGVRRLEVL--CCFGCMSVLANYFVFMTFFPACLSLVLE 221 (886)
T ss_pred HHH-HHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 788899988889998888886 4443 34678899999999999998864
No 85
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=87.44 E-value=0.23 Score=61.40 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceehHHHHHHHhccCCCHHHHHHHHHHhhhhHHHHH
Q 003551 184 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLA 263 (811)
Q Consensus 184 ~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~si~~t 263 (811)
+++.++.+.+.++--.|+|++.|+++|. .+.+--.+-+||+|+...|+++.+.... +.+..+|..+++...|.+++--
T Consensus 1047 s~i~~~~~~~~~v~l~g~m~~~~I~~Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~-~~~~~~ra~~~l~s~Gs~v~sg 1124 (1201)
T KOG1933|consen 1047 SLIMVLVDEMILVNLVGFMYLWGISLNA-VSLVNLVMSVGIAVEFCVHITHSFATSS-GPDATERAEEALNSIGSSVFSG 1124 (1201)
T ss_pred ceeeeeehhhhhhhHHHHHHhhceeehh-hhhhhhhhhcchhhhHHHHhhcceeecc-CCchhHHHHHHHhccCcceecc
Confidence 4455667777788889999999999997 5555567788999999999998876533 3378899999999999875543
Q ss_pred -HHHHHHHHHhhccCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003551 264 -SLSEVLAFAVGSFIPMPAC--RVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 315 (811)
Q Consensus 264 -slt~~~~F~~~~~~~~~~~--~~f~~~~a~~v~~~~~~~~t~~pall~l~~~r~ 315 (811)
++|...+-.++.+.+...+ ..|..+.++.++. .+-.+.|.|.++++.+...
T Consensus 1125 itlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~-a~hGliflpvlls~~g~~~ 1178 (1201)
T KOG1933|consen 1125 ITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVG-ALHGLIFLPVLLSLLGPES 1178 (1201)
T ss_pred eeehhcCceEEEeeccccEEEEEeehHHHHHHHHH-heeeeeehhhHHHhcCCcc
Confidence 4455555555555555554 4455555554443 3344788899999877443
No 86
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=68.26 E-value=26 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=11.8
Q ss_pred hhhHHhhhHHHHccCCCc
Q 003551 538 TIQFKEKLPWFLNALPSA 555 (811)
Q Consensus 538 ~~~f~~~l~~~l~~~p~~ 555 (811)
+++|.+.|+..+...|.+
T Consensus 3 k~efL~~L~~~L~~lp~~ 20 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEE 20 (181)
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 467777777777666543
No 87
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=66.52 E-value=1.6 Score=52.89 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=81.9
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHH-HHHHhcccc-hhHHHHHHHHhhhhcccchhhhhHHhhcc---------------
Q 003551 656 ITTCSFWSSAIILLVLTMIVVDLMG-VMAILKIQL-NAVSVVNLVMAVGIAVEFCVHITHAFSVS--------------- 718 (811)
Q Consensus 656 l~~~s~~~~~~~~~~i~~~~~~~~g-~m~l~gi~L-n~~s~i~~~~~iGi~Vd~~ihi~~~f~~~--------------- 718 (811)
+..+|+...+++...+.+.+..+.+ ....+|+.+ -.+-.+..+..+|++.|+.--+...|.++
T Consensus 344 i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~ 423 (999)
T KOG3664|consen 344 IYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFF 423 (999)
T ss_pred EecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccc
Confidence 3347777777777777666655432 223344432 22345566678999999998777666221
Q ss_pred --C--C--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhC
Q 003551 719 --S--G--DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA-LVLLGFLHGLVFLPVVLSVFG 791 (811)
Q Consensus 719 --~--~--~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~-~i~~g~~~~L~llPvll~~~~ 791 (811)
. + .-.....-.+......++.+. +||..++....-++...++-| ++++. .+..+...-...+|+..++.-
T Consensus 424 ~~l~~~~~ll~~~~~l~~~h~~~smfvt~-~~t~~~f~~~~ssp~~~lrcf--g~~A~~~v~~n~~~~v~~lPa~~SI~~ 500 (999)
T KOG3664|consen 424 LELSDHTELLENVFALTLRHASFSMFVTS-LTTACAFYANYSSPVIVLRCF--GIFAGLTVVFNYLLVVLWLPASVSIAL 500 (999)
T ss_pred cccccchhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhccccchHHHHHh--ccccccccccccceeEEeccchhhhhh
Confidence 0 0 112233444455556788886 799999988888887777754 55543 344555555667888665554
Q ss_pred C
Q 003551 792 P 792 (811)
Q Consensus 792 p 792 (811)
.
T Consensus 501 ~ 501 (999)
T KOG3664|consen 501 R 501 (999)
T ss_pred c
Confidence 3
No 88
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=44.47 E-value=5e+02 Score=29.62 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 003551 724 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795 (811)
Q Consensus 724 ~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~~~~L~llPvll~~~~p~~~ 795 (811)
+..+.-.++.+...+.|.++..+.+.....+.............++..++++.+.|. ++|.++..+|-.|.
T Consensus 350 ~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~-~lp~~~~k~~~DPa 420 (449)
T TIGR00400 350 DFFKVILREICVSILVGAILASVNFLRIVFFQGKLLIAFVVSSSLFVSLTVAKILGG-LLPIVAKLLKLDPA 420 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCChh
Confidence 345555666777776665544444444444322211111101111122333333333 47999998886654
No 89
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=40.24 E-value=1.7e+02 Score=26.31 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 003551 277 IPMPACRVFSMFAALAVLLDF 297 (811)
Q Consensus 277 ~~~~~~~~f~~~~a~~v~~~~ 297 (811)
.+.|..++.+...++++++..
T Consensus 88 ~~~p~~~~a~~~l~~~~~~~l 108 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAFML 108 (111)
T ss_pred ccChhHhHHHHHHHHHHHHHH
Confidence 367778877777666655544
No 90
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=35.59 E-value=1.8e+02 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHhcccchhHHHHHHHHhhhhccc
Q 003551 680 GVMAILKIQLNAVSVVNLVMAVGIAVE 706 (811)
Q Consensus 680 g~m~l~gi~Ln~~s~i~~~~~iGi~Vd 706 (811)
.++.++|++++...+.+.++..-++.+
T Consensus 60 ~iL~~fgIsl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 60 LILNFFGISLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 466789999999999988888777655
No 91
>PRK10352 nickel transporter permease NikB; Provisional
Probab=31.05 E-value=6.3e+02 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=25.0
Q ss_pred hhhhhhhhhhhcc-cceehHHHH-HHHh----------ccCCCHHHH-HHHHHHhhhhHHHH
Q 003551 214 MEVIPFLVLAVGV-DNMCILVHA-VKRQ----------QLELPLETR-ISNALVEVGPSITL 262 (811)
Q Consensus 214 ~~~~pfl~lgigv-d~~~~l~~~-~~~~----------~~~~~~~~~-~~~~~~~~g~si~~ 262 (811)
..++|.+++++.. .....++.+ ..+. .+|.+...- .++.++.+.++++.
T Consensus 175 ~liLP~l~L~l~~~~~~~r~~R~~~~~~~~~dyV~~ArakGl~~~~I~~~H~lrnal~piit 236 (314)
T PRK10352 175 HIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMIT 236 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHcCCCcceehHHhhHHhhHHHHHH
Confidence 4678888887654 222223322 2111 134444443 35677777766554
No 92
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=28.97 E-value=7.2e+02 Score=26.89 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhhcc-cceehHHHH---------HHHh--ccCCCHHH-HHHHHHHhhhhHHHHHHHHHHHHHH-hh----
Q 003551 213 IMEVIPFLVLAVGV-DNMCILVHA---------VKRQ--QLELPLET-RISNALVEVGPSITLASLSEVLAFA-VG---- 274 (811)
Q Consensus 213 ~~~~~pfl~lgigv-d~~~~l~~~---------~~~~--~~~~~~~~-~~~~~~~~~g~si~~tslt~~~~F~-~~---- 274 (811)
-..++|.+.+++.- -....++.+ |-++ .+|.+.++ -.+++++.+..|+. |.+...++++ .|
T Consensus 181 ~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~~H~lrNaliP~i-t~~~~~~~~ll~Gaviv 259 (317)
T COG0601 181 KHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVI-TVLGLQLGGLLGGAVVV 259 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCCcceehHHhhhHhhHHHHH-HHHHHHHHHHHhCHhHh
Confidence 45788998888654 222222222 1111 14555443 34588888888776 3333333443 33
Q ss_pred -ccCCChHHHHHHHHHH
Q 003551 275 -SFIPMPACRVFSMFAA 290 (811)
Q Consensus 275 -~~~~~~~~~~f~~~~a 290 (811)
.....|++-.+-+-+.
T Consensus 260 E~iF~~PGiG~l~~~Ai 276 (317)
T COG0601 260 ETVFSWPGLGRLLVDAI 276 (317)
T ss_pred hhhcCCCChHHHHHHHH
Confidence 2456777665554443
No 93
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=28.30 E-value=7.7e+02 Score=26.47 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=24.6
Q ss_pred hhhhhhhhhhhcc-cceehHHH-HHHHh----------ccCCCHHHH-HHHHHHhhhhHHHH
Q 003551 214 MEVIPFLVLAVGV-DNMCILVH-AVKRQ----------QLELPLETR-ISNALVEVGPSITL 262 (811)
Q Consensus 214 ~~~~pfl~lgigv-d~~~~l~~-~~~~~----------~~~~~~~~~-~~~~~~~~g~si~~ 262 (811)
..++|.+.++++. -....++. ...+. .+|.+..+. .++.++.+.+++..
T Consensus 172 ~~~LP~l~l~l~~~~~~~r~~R~~~~~~~~~dYV~~ArakGls~~~I~~rhilrnal~piit 233 (306)
T PRK15081 172 HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVT 233 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHcCcCcchhhHHHhHHhhHHHHHH
Confidence 4567888777654 12222221 22111 134454443 36777777776654
No 94
>PRK02935 hypothetical protein; Provisional
Probab=25.64 E-value=2.1e+02 Score=25.35 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=21.2
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcccccc
Q 003551 181 VLLGLSGVVLVMLSVLGSVGFFSAIGVKST 210 (811)
Q Consensus 181 ~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~ 210 (811)
.++....++.-.++++++.++..|.|.-.+
T Consensus 37 ~~~m~ifm~~G~l~~l~S~vvYFwiGmlSt 66 (110)
T PRK02935 37 IIIMTIFMLLGFLAVIASTVVYFWIGMLST 66 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344445566677888889999999987444
No 95
>PRK11111 hypothetical protein; Provisional
Probab=24.60 E-value=3.2e+02 Score=27.76 Aligned_cols=27 Identities=15% Similarity=0.455 Sum_probs=22.5
Q ss_pred HHHHhcccchhHHHHHHHHhhhhcccc
Q 003551 681 VMAILKIQLNAVSVVNLVMAVGIAVEF 707 (811)
Q Consensus 681 ~m~l~gi~Ln~~s~i~~~~~iGi~Vd~ 707 (811)
.+.++|++++...+.+.++...++.|-
T Consensus 67 iL~~fGIsl~afrIaGGiiL~~ial~M 93 (214)
T PRK11111 67 ILNLFGISIDSFRIAGGILVVTIAMSM 93 (214)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988887777663
No 96
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=23.43 E-value=7.7e+02 Score=26.36 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=16.1
Q ss_pred cCCCHHHH-HHHHHHhhhhHHHHHHHHHHH
Q 003551 241 LELPLETR-ISNALVEVGPSITLASLSEVL 269 (811)
Q Consensus 241 ~~~~~~~~-~~~~~~~~g~si~~tslt~~~ 269 (811)
.+.+..+. .++.++.+.+|++ |.+...+
T Consensus 212 ~G~s~~~i~~~hil~na~~p~i-t~l~~~~ 240 (306)
T PRK09471 212 KGLPMRRIILRHALKPALLPVL-SYMGPAF 240 (306)
T ss_pred cCCCcceehHHHhHHhhHHHHH-HHHHHHH
Confidence 34555444 4677777777765 5444443
No 97
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.92 E-value=2e+02 Score=25.75 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=21.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcccccc
Q 003551 181 VLLGLSGVVLVMLSVLGSVGFFSAIGVKST 210 (811)
Q Consensus 181 ~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~ 210 (811)
.++....++.-.++++++.++..|.|.-.+
T Consensus 36 ~~im~ifmllG~L~~l~S~~VYfwIGmlSt 65 (114)
T PF11023_consen 36 PIIMVIFMLLGLLAILASTAVYFWIGMLST 65 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 344445566668888899999999987544
Done!