Query 003551
Match_columns 811
No_of_seqs 315 out of 2799
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 18:06:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003551.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1600-1604//hhsearch_pdb/003551hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 1.0 1 1 332.8 38.3 609 123-795 318-1034(1057)
2 2v50_A Multidrug resistance pr 1.0 1 1 328.8 34.4 600 123-794 318-1031(1052)
3 3ne5_A Cation efflux system pr 1.0 1 1 323.1 31.9 603 123-794 323-1049(1054)
4 3aqp_A Probable secdf protein- 1.0 1 1 299.3 45.2 469 124-794 252-727 (741)
5 2v50_A Multidrug resistance pr 1.0 1 1 180.1 19.7 194 596-794 298-500 (1052)
6 4dx5_A Acriflavine resistance 1.0 1 1 174.8 23.1 194 597-795 299-501 (1057)
7 3ne5_A Cation efflux system pr 1.0 1 1 167.5 14.9 193 597-794 304-515 (1054)
8 3aqp_A Probable secdf protein- 1.0 1 1 161.1 22.1 161 630-793 265-428 (741)
9 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 8.4 0.2 13 13-25 31-43 (415)
10 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 8.3 0.3 17 9-25 6-22 (355)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=332.80 Aligned_cols=609 Identities=14% Similarity=0.090 Sum_probs=356.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99859998143318999965102425899999999999999982899887532212410214578999999999897877
Q 003551 123 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 123 ~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~s~~~l~~~~i~~~~~s~~~s~gl~ 202 (811)
++++++...++.+ +.+++........+.++.+++++++.+.+++++. ++..+++++++++++++++
T Consensus 318 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~------------~li~~~~ip~~~~~~~~~l 383 (1057)
T 4dx5_A 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRA------------TLIPTIAVPVVLLGTFAVL 383 (1057)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 9981999970655--9999999999999999999999999999860699------------9999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 6405521103465664554310246513178999984-16-8999999999998655699999999999988612678--
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 278 (811)
Q Consensus 203 ~~~g~~~~~~~~~~~pflil~igvd~~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~-- 278 (811)
.++|.++|. ++.....+++|++|||.+++++++++. .+ +.++++++.++.++.+.|++.|++|++++|+.+.+++
T Consensus 384 ~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~ 462 (1057)
T 4dx5_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1057)
T ss_dssp HHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHH
T ss_pred HHHCCCHHH-HHHHHHHHHEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 995776899-9999999974000356488589999999865999899999999999999999999999999999971672
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHH---HHHH
Q ss_conf -758999999999999999999999999999888853112896311011369986687788888884159999---9865
Q 003551 279 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 354 (811)
Q Consensus 279 -~~~v~~f~~~~a~~i~~~~~~~~t~~~all~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f---~~~~ 354 (811)
.+.++.|++..+++++++++.++|+.|+++++..++....+.. .. + .+...+..+. +++.
T Consensus 463 ~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~---------~~----~---~~~~~~~~~~~~~~~~~ 526 (1057)
T 4dx5_A 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHG---------EG----K---KGFFGWFNRMFEKSTHH 526 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCS---------TT----C---CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CC----C---HHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999864566654443---------32----1---05778787899999999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCHHHH---HHHHHHHHCC--CCCCE
Q ss_conf 2111245-641001688999999999764202488885432---------3578860322---6889984313--79989
Q 003551 355 HATILSL-WGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHLR--IGPPL 419 (811)
Q Consensus 355 y~~~l~~-~~~k~~vi~~f~~~~~~si~~~~~i~~g~d~~~---------~~p~dS~~~~---~~~~~~~~f~--~~~pv 419 (811)
|.+++.+ ...|..+++++++++++++++..+++.++-|.. .+|.++...+ ..+.+++.+. ..+.+
T Consensus 527 y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V 606 (1057)
T 4dx5_A 527 YTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNV 606 (1057)
T ss_dssp HHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999843799999999999999999996796158888888799999869999999999999999999864589871
Q ss_pred EEEEECC--CCC--HHHHHHHHHHCCCC--------CCCCCHHHHHHHH-CCCCCCCCC--CCC----------------
Q ss_conf 9999257--999--15564321101233--------6851069999871-138998644--688----------------
Q 003551 420 YFVVKNY--NYS--SESRQTNQLCSISQ--------CDSNSLLNEISRA-SLIPQSSYI--AKP---------------- 468 (811)
Q Consensus 420 ~~vv~~~--~~~--~~~~~~~~~~~~~~--------~~~~~l~~~l~~~-~~~~~~~~i--~~~---------------- 468 (811)
.-+.... +.. .+.. ......... -+..++.+++++. .+.|+.... ..+
T Consensus 607 ~~v~s~~G~~~~~~~~n~-~~i~V~L~~~~~r~~~~~s~~~i~~~lr~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~l~ 685 (1057)
T 4dx5_A 607 ESVFAVNGFGFAGRGQNT-GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELI 685 (1057)
T ss_dssp EEEEEEESCSTTCCCTTE-EEEEEEECCGGGSCSGGGSHHHHHHHHHHHHTTSTTCEEEEECCCSCGGGCCSSEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCE-EEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 799999645678899744-8999997168876776799999999999987208980899733776567788888569999
Q ss_pred --CCCCH-------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf --76608-------879964075766643457899888999999999999998899886678876555687778999942
Q 003551 469 --AASWL-------DDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTI 539 (811)
Q Consensus 469 --~~swl-------~df~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 539 (811)
...-. ++..+.+.......-.... .. .........-++++.... .+ -+.+
T Consensus 686 ~~~g~d~~~L~~~a~~l~~~l~~~~gv~~~v~~--~~-~~~~~~l~i~id~~~a~~-----------------~G-ls~~ 744 (1057)
T 4dx5_A 686 DQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRP--NG-LEDTPQFKIDIDQEKAQA-----------------LG-VSIN 744 (1057)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHTTCTTTEEEEEE--SS-CCCEEEEEEEECHHHHHH-----------------HT-CCHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCC--CC-CCCCCEEEEEECHHHHHH-----------------CC-CCHH
T ss_conf 578989999999999999999709992541654--66-689714999988999987-----------------69-9999
Q ss_pred HHHHHHHHHHCCCCCCCC-------------------------------CCCCCCCCCCCCCCCC-CCCCEE------EE
Q ss_conf 688523898701998310-------------------------------1698888655434578-888717------98
Q 003551 540 QFKEKLPWFLNALPSASC-------------------------------AKGGHGAYTNSVDLKG-YENGIV------QA 581 (811)
Q Consensus 540 ~f~~~l~~~l~~~p~~~~-------------------------------~~gg~~~y~~~v~~~~-~~~~~I------~~ 581 (811)
+..+.+...+...+-... +.|+..+.++-.+++. .....| ..
T Consensus 745 ~v~~~l~~~~~g~~~~~~~~~~~~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i~~~~~~~~ 824 (1057)
T 4dx5_A 745 DINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPS 824 (1057)
T ss_dssp HHHHHHHHHHHCEEEEEEEETTEEEEEEEEECGGGSSSGGGGGGCEEECTTSCEEEGGGTEEEEEEEECSEEEEETTEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCEEEEEEEECCHHHCCCHHHHCCEEEECCCCCEEEHHHCEEEEEECCCCEEEEECCCEE
T ss_conf 99999999958925379966998999998459434499998702297899998999547189998358863897379189
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 79984036888734799999999999998431038633546213411467999899999999999999999999842501
Q 003551 582 SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSF 661 (811)
Q Consensus 582 sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~ 661 (811)
........+..+..+ ..+.+++..+.. +.|+++...|. .++......+....++++++++++++++.|+|+
T Consensus 825 v~v~~~~~~~~~~~~---~~~~~~~~~~~l--p~g~~~~~~G~----~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s~ 895 (1057)
T 4dx5_A 825 MEILGQAAPGKSTGE---AMELMEQLASKL--PTGVGYDWTGM----SYQERLSGNQAPSLYAISLIVVFLCLAALYESW 895 (1057)
T ss_dssp EEEEEEECTTCCHHH---HHHHHHHHHHTS--CTTEEEEECHH----HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEEEEECCCCCCHHH---HHHHHHHHHHHC--CCCCEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997489999899---999999877429--89877985572----899999998899999999999999999999628
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 378999999999999999999985034416889999976652103021444776603----7999999999999855898
Q 003551 662 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS----SGDKNQRMKEALGTMGASV 737 (811)
Q Consensus 662 ~~~li~~~~i~~~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~~----~~~~~~~~~~al~~~g~pv 737 (811)
+.++++++++++.+++.+|.|+++|.++|..+++++++.+|++|||++|+..++++. +.+..+++.+|...+++||
T Consensus 896 ~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpi 975 (1057)
T 4dx5_A 896 SIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPI 975 (1057)
T ss_dssp STHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999999988999999999999779851999999999999987170898359769988759999999999998867689
Q ss_pred HHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9897789999999863047---403799999999999999999999999999885289986
Q 003551 738 FSGITLTKLVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795 (811)
Q Consensus 738 ~~~~~ltt~~g~~~L~fs~---~~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~~ 795 (811)
++++ +||++||+||+++. .+.++.+ .....+.++++++.+++++|+++.+++++..
T Consensus 976 l~t~-ltt~~g~~pl~~~~g~g~~~~~~~-g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~ 1034 (1057)
T 4dx5_A 976 LMTS-LAFILGVMPLVISTGAGSGAQNAV-GTGVMGGMVTATVLAIFFVPVFFVVVRRRFS 1034 (1057)
T ss_dssp HHHH-HHHHHHTHHHHTCCSTTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HHHHHHHHHHHHHCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-999999999998458962665154-9999999999999999999999999987421
No 2
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=328.78 Aligned_cols=600 Identities=14% Similarity=0.100 Sum_probs=354.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99859998143318999965102425899999999999999982899887532212410214578999999999897877
Q 003551 123 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 123 ~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~s~~~l~~~~i~~~~~s~~~s~gl~ 202 (811)
++++++.+.++.+ +.+++..+.-...+.++.+++++.+.+.+++++. ++..++.++++++++++++
T Consensus 318 p~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~~------------~li~~~~ip~s~~~~~~~l 383 (1052)
T 2v50_A 318 PQGMKVVYPYDTT--PVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRA------------TLIPTIAVPVVLLGTFGVL 383 (1052)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 9981999971526--9999999999999999999999999999851799------------9999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 6405521103465664554310246513178999984--1689999999999986556999999999999886126787-
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 279 (811)
Q Consensus 203 ~~~g~~~~~~~~~~~pflil~igvd~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~- 279 (811)
.++|.++|. ++.....+++|++|||.+++++++++. .++.++.+++.++.++.+.|+++|++|++++|+.+.+++.
T Consensus 384 ~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~ 462 (1052)
T 2v50_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGS 462 (1052)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHH
T ss_pred HHHCCCHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 996787789-9999999997755056599845999999865999899999999999999999999999999999985571
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHH---HHHH
Q ss_conf --58999999999999999999999999999888853112896311011369986687788888884159999---9865
Q 003551 280 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 354 (811)
Q Consensus 280 --~~v~~f~~~~a~~i~~~~~~~~t~~~all~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f---~~~~ 354 (811)
+.++.||+..+++++++++.++|+.|+++++..++....+.. .+. .+......++ +.+.
T Consensus 463 ~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~ 526 (1052)
T 2v50_A 463 TGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHG-------EHK---------GGFFGWFNRMFLSTTHG 526 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCC---------CHHHHHHHHHHHHHHHH
T ss_conf 77899999999999999999999999999999864567664321-------121---------01456777899999999
Q ss_pred CCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCHHHH---HHHHHHHHCCCCCC-
Q ss_conf 21112---45641001688999999999764202488885432---------3578860322---68899843137998-
Q 003551 355 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHLRIGPP- 418 (811)
Q Consensus 355 y~~~l---~~~~~k~~vi~~f~~~~~~si~~~~~i~~g~d~~~---------~~p~dS~~~~---~~~~~~~~f~~~~p- 418 (811)
|.+++ .++ |..+++++++++++++++..+++.++.|.. .+|+++.+.+ ..+.+++++...+.
T Consensus 527 y~~~l~~~l~~--~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~~p~~ 604 (1052)
T 2v50_A 527 YERGVASILKH--RAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESS 604 (1052)
T ss_dssp HHHHHHHHHHH--CSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999855--7999999999999999999977972288888877999998399999999999999999999848876
Q ss_pred -EEEEEECCCC----CHHHHHHHHHHCCCCC--------CCCCHHHHHHHH-CCCCCCCCC--CC---------------
Q ss_conf -9999925799----9155643211012336--------851069999871-138998644--68---------------
Q 003551 419 -LYFVVKNYNY----SSESRQTNQLCSISQC--------DSNSLLNEISRA-SLIPQSSYI--AK--------------- 467 (811)
Q Consensus 419 -v~~vv~~~~~----~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~-~~~~~~~~i--~~--------------- 467 (811)
+.-+....+. ..+.. .......... +..++.+++++. ...|+.... ..
T Consensus 605 ~V~~v~s~~G~~~~~~~~~~-~~i~v~l~~~~~r~~~~~~~~~i~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~ 683 (1052)
T 2v50_A 605 SVSSVFTVTGFNFAGRGQSS-GMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKDAMVFAFAPPSVLELGNATGFDLF 683 (1052)
T ss_dssp TEEEEEEEESCCSSCCSTTE-EEEEEEECCTTSCCSSTTSHHHHHHHHHHHSSSCSSSEEEEECCCSCC-----CCCCEE
T ss_pred EEEEEEEEECCCCCCCCCCE-EEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEE
T ss_conf 07999998267778899752-79999972678656645789999999999862079847998337654577888865899
Q ss_pred ------CC----CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------87----66088799640757666434578998889999999999999988998866788765556877789999
Q 003551 468 ------PA----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS 537 (811)
Q Consensus 468 ------~~----~swl~df~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 537 (811)
+. ..+.++..+.++..... -.... .. ....+.....++++..+..|+ +
T Consensus 684 i~~~~g~d~~~L~~~a~~l~~~l~~~~gv-~~v~~--~~-~~~~p~~~i~id~~~a~~~Gl------------------s 741 (1052)
T 2v50_A 684 LQDQAGVGHEVLLQARNKFLMLAAQNPAL-QRVRP--NG-MSDEPQYKLEIDDEKASALGV------------------S 741 (1052)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHTTSCTTE-EEEEE--SS-CCCEECCBCEECHHHHTTTTC------------------C
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCE-EECCC--CC-CCCCEEEEEEECHHHHHHCCC------------------C
T ss_conf 99789999999999999999999609992-74246--66-679705999988999988699------------------9
Q ss_pred HHHHHHHHHHHHCCCCCC-------------------------------CCCCCCCCCCCCCCC---------CCCCCCC
Q ss_conf 426885238987019983-------------------------------101698888655434---------5788887
Q 003551 538 TIQFKEKLPWFLNALPSA-------------------------------SCAKGGHGAYTNSVD---------LKGYENG 577 (811)
Q Consensus 538 ~~~f~~~l~~~l~~~p~~-------------------------------~~~~gg~~~y~~~v~---------~~~~~~~ 577 (811)
.++..+.+...+...+-. ..+.|+..+.++-.+ +..++..
T Consensus 742 ~~~i~~~l~~~~~g~~~~~~~~~~~~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~VpL~~va~i~~~~~p~~i~r~n~~ 821 (1052)
T 2v50_A 742 LADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPFNAFATGKWEYGSPKLERYNGV 821 (1052)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTEEEEEEEEECGGGSSSGGGGTTCEEECSSSCEEEGGGGEECCCCEECSEECBCSSS
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEEEECCCE
T ss_conf 99999999999589221499978919999999684664699988057248899989995371799994588618960880
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17987998403688873479999999999999843103863354621341146799---989999999999999999999
Q 003551 578 IVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYL---DIWRTALINLAIAIGAVFVVC 654 (811)
Q Consensus 578 ~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~a~~~v~iv~ 654 (811)
+ .........+..+..+.. +++++..++ .|.|..+.+.++.. ....++...++++++++++++
T Consensus 822 ~--~i~V~~~~~~~~~~~~~~---~~i~~~~~~---------lp~g~~~~~~G~~~~~~~~~~~~~~~~~~a~~~i~l~l 887 (1052)
T 2v50_A 822 P--AMEILGEPAPGLSSGDAM---AAVEEIVKQ---------LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCL 887 (1052)
T ss_dssp B--EEEEEEEECTTCCSCTTT---TTHHHHGGG---------SCTTEEEEECTHHHHTTTTCCCSHHHHHHHHHHHHHHH
T ss_pred E--EEEEEEEECCCCCHHHHH---HHHHHHHHH---------CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6--899999847998889999---999999863---------89983899556489999999879999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCHHHHHHHHHH
Q ss_conf 9842501378999999999999999999985034416889999976652103021444776603---7999999999999
Q 003551 655 LITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALG 731 (811)
Q Consensus 655 ~~~~~s~~~~li~~~~i~~~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~~---~~~~~~~~~~al~ 731 (811)
++.|+|++.++++++++++.++++++.|+++|.++|..+++++++.+|++|||++|+..++++. +.+.++++.+|..
T Consensus 888 ~~~f~s~~~~l~il~~ip~~~~g~~~~~~~~g~~l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~ 967 (1052)
T 2v50_A 888 AALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACR 967 (1052)
T ss_dssp HHHTTCSSTTHHHHTHHHHHHTTHHHHHHHTTCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99980468899999998899999999999977970289999999999997727599954388998769998999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 85589898977899999998630474---0379999999999999999999999999988528998
Q 003551 732 TMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 732 ~~g~pv~~~~~ltt~~g~~~L~fs~~---~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~ 794 (811)
++++||++++ +||++|++||+|+.+ +..+.+ .....+.++++++.+|+++|+++.++++..
T Consensus 968 ~~~rpil~t~-~tt~~g~~pl~~~~~~g~~~~~~~-~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~~ 1031 (1052)
T 2v50_A 968 MRLRPIVMTS-LAFILGVVPLAISTGAGSGSQHAI-GTGVIGGMVTATVLAIFWVPLFYVAVSTLF 1031 (1052)
T ss_dssp HHHHHHHHHH-HHHHTTSHHHHTCCSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7077799999-999999999985379872654245-999999999999999999999999998610
No 3
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=323.13 Aligned_cols=603 Identities=10% Similarity=0.069 Sum_probs=350.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99859998143318999965102425899999999999999982899887532212410214578999999999897877
Q 003551 123 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 123 ~~~~~v~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~s~~~l~~~~i~~~~~s~~~s~gl~ 202 (811)
++++++.+.++.+ +.+++........+.++.+++++.+.+.+++++. ++..+++++++++++++++
T Consensus 323 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~------------~li~~~~ip~~~~~~~~~l 388 (1054)
T 3ne5_A 323 PEGVEIVTTYDRS--QLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRS------------ALVAIISLPLGLCIAFIVM 388 (1054)
T ss_dssp CTTEEEEEEEETH--HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSHHH------------HHHHHTTTHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 9983999985465--9999999999999999999999999998455588------------9999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHC-C-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64055211034656645543102465131789999841-6-----------89999999999986556999999999999
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----------ELPLETRISNALVEVGPSITLASLSEVLA 270 (811)
Q Consensus 203 ~~~g~~~~~~~~~~~pflil~igvd~~~~l~~~~~~~~-~-----------~~~~~~~~~~~~~~~g~si~~tslt~~~~ 270 (811)
.++|.++|. .+.....+++|+++||.+++++++++.. + +.++.+++.++.++.+++++.+++|++++
T Consensus 389 ~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~~ 467 (1054)
T 3ne5_A 389 HFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLS 467 (1054)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHH-HHHHHHHHHHHHEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 981877889-9999999985620317398731899998611344444444567889999999999999999999999999
Q ss_pred HHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 88612678---758999999999999999999999999999888853112896311011369986687788888884159
Q 003551 271 FAVGSFIP---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLL 347 (811)
Q Consensus 271 F~~~~~~~---~~~v~~f~~~~a~~i~~~~~~~~t~~~all~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (811)
|+.+.+.+ .+..+.|++..+++++++++.++|+.|+++++..++....+.+ ......+
T Consensus 468 f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~-------------------~~~~~~~ 528 (1054)
T 3ne5_A 468 FIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESS-------------------NPLNRFL 528 (1054)
T ss_dssp TGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC-------------------------------CHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------------CHHHHHH
T ss_conf 998887065488999988999999999999999999999999971366653223-------------------3789999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCHHHH---HHHHHHHHCCC
Q ss_conf 99998652111245641001688999999999764202488885432---------3578860322---68899843137
Q 003551 348 ARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHLRI 415 (811)
Q Consensus 348 ~~f~~~~y~~~l~~~~~k~~vi~~f~~~~~~si~~~~~i~~g~d~~~---------~~p~dS~~~~---~~~~~~~~f~~ 415 (811)
.+++++. ..+..++ +..+++++++++++++++..+++.++-|.. ..|+++.+.+ ..+.+++.+..
T Consensus 529 ~~~y~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~g~~~v~~~~p~Gtsle~t~~~~~~ie~~l~~ 605 (1054)
T 3ne5_A 529 IRVYHPL-LLKVLHW--PKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMS 605 (1054)
T ss_dssp HHHHHHH-HHHHTSS--THHHHHHHHHHHHHTHHHHTTCCBCSSCCCCCSEEEECCBCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999-9999852--799999999999999999976794589887887599999439999999999999999999851
Q ss_pred CCCEEEEEEC--C-CC-CHHH--HHHHHHHCCC-------CCCCCCHHHHHHHHCCCCCCCCC-C---------------
Q ss_conf 9989999925--7-99-9155--6432110123-------36851069999871138998644-6---------------
Q 003551 416 GPPLYFVVKN--Y-NY-SSES--RQTNQLCSIS-------QCDSNSLLNEISRASLIPQSSYI-A--------------- 466 (811)
Q Consensus 416 ~~pv~~vv~~--~-~~-~~~~--~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~i-~--------------- 466 (811)
-+.+.-+... . +. .++. .......... ..+..++.+++++..+.|+.... .
T Consensus 606 ~p~V~~v~s~~G~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~l~~~lr~~~~~p~~~~~~~~~~~~~~~~~~~g~~ 685 (1054)
T 3ne5_A 606 VPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIK 685 (1054)
T ss_dssp STTEEEEEEEEECCSSTTCCCCTTCBCEEEEECCTTTSCSSCCHHHHHHHHHHHSCCTTCBCCEECHHHHHHHHHHTSCS
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 98918999971577777888886438999996345653556899999999999718998434203553111000367888
Q ss_pred --------CCCCCCH----HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------8876608----8799640757666434578998889999999999999988998866788765556877789
Q 003551 467 --------KPAASWL----DDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKD 534 (811)
Q Consensus 467 --------~~~~swl----~df~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (811)
.+...-+ ++..+.+...... ..... .. ..........++++.....++
T Consensus 686 ~~i~i~l~G~d~~~L~~~a~~l~~~l~~~~gv--~~v~~-~~-~~~~~~l~i~id~~~a~~~Gl---------------- 745 (1054)
T 3ne5_A 686 SPIGIKVSGTVLADIDAMAEQIEEVARTVPGV--ASALA-ER-LEGGRYINVEINREKAARYGM---------------- 745 (1054)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHHHHHHSTTC--SEEEE-CC-SSCEEEEEEEECHHHHHTTTC----------------
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC--EEEEC-CC-CCCCEEEEEEECHHHHHHCCC----------------
T ss_conf 76799996889999999999999998569992--67344-66-679805999989999988498----------------
Q ss_pred CCCHHHHHHHHHHHHCCCCCC-------------------------------CCCCCCCCCCCCCCCCCC-CCCCEE---
Q ss_conf 999426885238987019983-------------------------------101698888655434578-888717---
Q 003551 535 RPSTIQFKEKLPWFLNALPSA-------------------------------SCAKGGHGAYTNSVDLKG-YENGIV--- 579 (811)
Q Consensus 535 ~p~~~~f~~~l~~~l~~~p~~-------------------------------~~~~gg~~~y~~~v~~~~-~~~~~I--- 579 (811)
+.++..+.+...+...+-. ..+.|...+...-.+... .....|
T Consensus 746 --s~~~v~~~l~~~~~g~~~~~~~~~~~~~~v~vr~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i~~~ 823 (1054)
T 3ne5_A 746 --TVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTE 823 (1054)
T ss_dssp --CHHHHHHHHHTTTSCCEEEEEEETTEEEEEEEECCGGGSSSHHHHTTCEEECTTCCEEEGGGTEEEEEEEECSCEEEE
T ss_pred --CHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEEEEE
T ss_conf --999999999998389510589879989999999673544898987122768899989995480899983587618987
Q ss_pred ---EEEEEEEECCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---987998403688873479999999999999-8431038633546213411467999899999999999999999999
Q 003551 580 ---QASSFRTYHTPLNRQIDYVNSMRAAREFSS-RVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCL 655 (811)
Q Consensus 580 ---~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~ 655 (811)
.......... ..+..+..+++++..+ +...+.|+++...| ..++......+....+++++++++++++
T Consensus 824 ~~~~~~~v~~~~~----~~~~~~~~~~i~~~~~~~~~~p~g~~~~~~G----~~~~~~~~~~~~~~~~~~al~li~l~L~ 895 (1054)
T 3ne5_A 824 NARPTSWIYIDAR----DRDMVSVVHDLQKAIAEKVQLKPGTSVAFSG----QFELLERANHKLKLMVPMTLMIIFVLLY 895 (1054)
T ss_dssp TTEEEEEEEEECC----SSCHHHHHHHHHHHHHHHCCCCTTCEEEEEE----HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEC----CCCHHHHHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7917999999818----9998999999999998428998983899674----5899999999999999999999999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH---C------C-----CCC
Q ss_conf 8425013789999999999999999999850344168899999766521030214447766---0------3-----799
Q 003551 656 ITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---V------S-----SGD 721 (811)
Q Consensus 656 ~~~~s~~~~li~~~~i~~~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~---~------~-----~~~ 721 (811)
+.|+|++.++++++++++.+++.+|.|+++|.++|..+++++++.+|++|||++|+..++. + + +.+
T Consensus 896 ~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~ 975 (1054)
T 3ne5_A 896 LAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQK 975 (1054)
T ss_dssp HHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99807999999999998999999999999879830999999999999999532368999999998643210023558998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998558989897789999999863047---40379999999999999999999999999988528998
Q 003551 722 KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 722 ~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~---~~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~ 794 (811)
..+++.+|...+++||++++ +||++|++||+++. .+.++.+ ....++.++++++.+++++|+++.+++.+.
T Consensus 976 ~~~Ai~~a~~~~~rpil~t~-ltti~g~~pl~~~~g~g~~~~~~l-~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~~ 1049 (1054)
T 3ne5_A 976 LDEALYHGAVLRVRPKAMTV-AVIIAGLLPILWGTGAGSEVMSRI-AAPMIGGMITAPLLSLFIIPAAYKLMWLHR 1049 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCSTTHHHHHHT-THHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999887474899999-999999999996258975775557-999996999999999999999999999734
No 4
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=299.31 Aligned_cols=469 Identities=13% Similarity=0.144 Sum_probs=316.8
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985999814331899996510242-5899999999999999982899887532212410214578999999999897877
Q 003551 124 KNLTLAFSSESSIEEELKRESTAD-AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 202 (811)
Q Consensus 124 ~~~~v~~~~~~s~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~s~~~l~~~~i~~~~~s~~~s~gl~ 202 (811)
.++++.+. +++..++.+.+..+ .....++++++++++.+.++ ++ .++..++.+++++++++|++
T Consensus 252 ~~~~~~~~--~~vg~~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~~------------~~li~~~~l~~~i~~~~~~l 316 (741)
T 3aqp_A 252 VPLKVAEI--RAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG-PH------------LGLVASLGLLYTSALILGLL 316 (741)
T ss_dssp CCCEEEEE--EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEE--ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 86268875--40687899999999999999999999999999981-37------------89999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 6405521103465664554310246513178999984-168999999999998655699999999999988612678758
Q 003551 203 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 281 (811)
Q Consensus 203 ~~~g~~~~~~~~~~~pflil~igvd~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~ 281 (811)
.++|.++|. ++...+.+++|++|||.+++.+++++. +++.++++++.+++++++.|++.+++|++++|+.+.+++.+.
T Consensus 317 ~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~~ 395 (741)
T 3aqp_A 317 SGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGP 395 (741)
T ss_dssp HHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTH
T ss_pred HHHCCCCCH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998778159-9999999999999834204589999999859999999999999999999999999999999999970566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999999999988885311289631101136998668778888888415999998652111245
Q 003551 282 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSL 361 (811)
Q Consensus 282 v~~f~~~~a~~i~~~~~~~~t~~~all~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~y~~~l~~ 361 (811)
+|.||+..+++++++++.++++.|+++.+..++...++. . ++.+...+++.+
T Consensus 396 ~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~-~---------------------------~~~~~~~~~l~~ 447 (741)
T 3aqp_A 396 VRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPP-M---------------------------WLVDPRFNFMGP 447 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-C---------------------------CCCCCCCSTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C---------------------------CCCCCHHHHHHH
T ss_conf 326999999999999999999999999998416777886-4---------------------------210202069754
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 64100168899999999976420248888543235788603226889984313799899999257999155643211012
Q 003551 362 WGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSI 441 (811)
Q Consensus 362 ~~~k~~vi~~f~~~~~~si~~~~~i~~g~d~~~~~p~dS~~~~~~~~~~~~f~~~~pv~~vv~~~~~~~~~~~~~~~~~~ 441 (811)
+ ..+++++++++++++++... + +++. + ..|.++.++.+..++. .. .
T Consensus 448 r---~~~~~i~~vl~~~~~~~~~~-~-~~~~------~-----------~~f~Gg~~i~v~~~~~-~~-~---------- 493 (741)
T 3aqp_A 448 A---RYVTAATLLLAALAAGVVFA-K-GFNY------S-----------IDFTGGTAYTLRAEPN-VE-V---------- 493 (741)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH-H-TCCC------C-----------HHHHCEEEEEEEECTT-CC-H----------
T ss_pred H---HHHHHHHHHHHHHHHHHHHH-C-CCCC------C-----------EECCCCCEEEEEECCC-CC-H----------
T ss_conf 0---79999999999999999865-2-4775------2-----------2628985799997899-99-9----------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33685106999987113899864468876608879964075766643457899888999999999999998899886678
Q 003551 442 SQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD 521 (811)
Q Consensus 442 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~swl~df~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (811)
+++.+.+++. . .+.++.
T Consensus 494 -----~~l~~~l~~~------------------------g---------------~~~~~~------------------- 510 (741)
T 3aqp_A 494 -----ETLRRFLEEK------------------------G---------------FPGKEA------------------- 510 (741)
T ss_dssp -----HHHHHHHHTT------------------------T---------------SCSSSC-------------------
T ss_pred -----HHHHHHHHHC------------------------C---------------CCCCCH-------------------
T ss_conf -----9999999865------------------------9---------------999842-------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 87655568777899994268852389870199831016988886554345788887179879984036888734799999
Q 003551 522 CTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSM 601 (811)
Q Consensus 522 ~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~ 601 (811)
..+.+ |.. . ..+ .++.+...+. +.++..+..
T Consensus 511 ---------------~v~~~------------------g~~----~------~~~-----~~~~v~~~~~-~~~~~~~l~ 541 (741)
T 3aqp_A 511 ---------------VITQV------------------QAP----T------AAY-----REFLVKLPPL-SDERRLELE 541 (741)
T ss_dssp ---------------EEEEC----------------------------------C-----EEEEEEESCC-CHHHHHHHH
T ss_pred ---------------HHHHC------------------CCC----C------CCC-----EEEEEEECCC-CHHHHHHHH
T ss_conf ---------------34110------------------678----7------675-----5899980799-999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999843103863354621341146799989999999999999999999984250137899999999999999999
Q 003551 602 RAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGV 681 (811)
Q Consensus 602 ~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~~~i~~~G~ 681 (811)
+.++ +.+.. ..++..+.-.+...++.++....++++++++++++++.| |++.++++++++++.+++++|+
T Consensus 542 ~~l~---~~~~~------~~~~~~~vG~~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~ 611 (741)
T 3aqp_A 542 RLFA---SELKA------TVLASETVGPAIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGM 611 (741)
T ss_dssp HHHH---HHSSS------CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHCCC------CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999---76587------760799735889999999899999999999999999999-8999899999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99850344168899999766521030214447766037-----9999999999998558989897789999999863047
Q 003551 682 MAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 756 (811)
Q Consensus 682 m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~~~-----~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~ 756 (811)
|+++|+++|..+++.+++.+|++|||++|+..+|+++. .+.+|++.+++.++++|+++++ +|+++|+++|+++.
T Consensus 612 l~l~g~~l~~~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Ts-ltt~~g~~~L~~~g 690 (741)
T 3aqp_A 612 YSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTS-LTTLLPILALLFLG 690 (741)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_conf 99991671699999999999996466388449999999744799999999999999999999999-99999999999954
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 40379999999999999999999999999988528998
Q 003551 757 TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 757 ~~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~ 794 (811)
.+..+.| ...+...++++++++++++|+++.+++++.
T Consensus 691 ~~~~~~~-g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 691 GSVLRDF-ALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5878999-999999999999999999999999960123
No 5
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=180.13 Aligned_cols=194 Identities=13% Similarity=0.222 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 7999999999999984310--38633546213411467999899999999999999999999842501378999999999
Q 003551 596 DYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 673 (811)
Q Consensus 596 ~~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~ 673 (811)
+..+..+++++..+++.+. .|+++...+. ..+.......+...++.+++++++++++++++|++.++++++++++
T Consensus 298 ~~~~~~~~v~~~~~~~~~~lp~g~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~~~li~~~~ip~ 374 (1052)
T 2v50_A 298 NALDTAKAIRQTIANLEPFMPQGMKVVYPYD---TTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPV 374 (1052)
T ss_dssp CHHHHHHHHHHHHTTTGGGSCTTEEEEEEEE---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999998855899819999715---2699999999999999999999999999998517999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998503441688999997665210302144477660----37999999999999855898989778999999
Q 003551 674 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGV 749 (811)
Q Consensus 674 ~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~----~~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~ 749 (811)
++++++|+|+++|+++|.+|++++++++|++|||++|+..+|++ ++.++.+|+.++..++++||++++ +||++||
T Consensus 375 s~~~~~~~l~~~g~~ln~~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~-ltt~~~f 453 (1052)
T 2v50_A 375 VLLGTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIA-MVLSAVF 453 (1052)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 999999999996787789999999999775505659984599999986599989999999999999999999-9999999
Q ss_pred HHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98630474---0379999999999999999999999999988528998
Q 003551 750 IVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 750 ~~L~fs~~---~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~ 794 (811)
+||+|++. +.++.+ +......++++++.+++++|+++++++++.
T Consensus 454 ~pl~~~~~~~g~~~~~~-~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~ 500 (1052)
T 2v50_A 454 LPMAFFGGSTGVIYRQF-SITIVSAMALSVIVALILTPALCATMLKPI 500 (1052)
T ss_dssp HHHHTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998557177899999-999999999999999999999999864567
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=174.84 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHH--CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999999984310--386335462134114679998999999999999999999998425013789999999999
Q 003551 597 YVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 674 (811)
Q Consensus 597 ~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~~ 674 (811)
..+..+++++..+++++. .|+++...+. ..+.......+...++.+++++++++++++|+|++.++++++++++.
T Consensus 299 ~~~~~~~v~~~~~~~~~~lp~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~~li~~~~ip~~ 375 (1057)
T 4dx5_A 299 ALDTAAAIRAELAKMEPFFPSGLKIVYPYD---TTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVV 375 (1057)
T ss_dssp HHHHHHHHHHHHHHHGGGCCTTEEEEEEEE---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999986899819999706---55999999999999999999999999999986069999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985034416889999976652103021444776603----79999999999998558989897789999999
Q 003551 675 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS----SGDKNQRMKEALGTMGASVFSGITLTKLVGVI 750 (811)
Q Consensus 675 ~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~~----~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~ 750 (811)
+++++++|+++|+++|.+|++++++++|++|||++|+..++++. +.++.+++.++..++++|+++++ +||++||+
T Consensus 376 ~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~-ltt~~~f~ 454 (1057)
T 4dx5_A 376 LLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFV 454 (1057)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999995776899999999997400035648858999999986599989999999999999999999-99999999
Q ss_pred HHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 863047---403799999999999999999999999999885289986
Q 003551 751 VLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 795 (811)
Q Consensus 751 ~L~fs~---~~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~~ 795 (811)
||+|++ .+.++.+ .......++++++.+++++|++++++.++..
T Consensus 455 pl~~~~g~~~~~~~~~-a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~ 501 (1057)
T 4dx5_A 455 PMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPALCATMLKPIA 501 (1057)
T ss_dssp GGGGCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9997167288999999-9999999999999999999999998645666
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=167.54 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHH--CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999999984310--386335462134114679998999999999999999999998425013789999999999
Q 003551 597 YVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 674 (811)
Q Consensus 597 ~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~~ 674 (811)
..+..+++++..+++++. .|+++... +...+.......+...++.+++++++++++++++|++.++++++++++.
T Consensus 304 ~~~~~~~v~~~l~~~~~~lp~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~~li~~~~ip~~ 380 (1054)
T 3ne5_A 304 AREVIAAVKDKLETLKSSLPEGVEIVTT---YDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLG 380 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTEEEEEE---EETHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEE---ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999768998399998---5465999999999999999999999999999845558899999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--------------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985034416889999976652103021444776603--------------7999999999999855898989
Q 003551 675 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--------------SGDKNQRMKEALGTMGASVFSG 740 (811)
Q Consensus 675 ~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~~~f~~~--------------~~~~~~~~~~al~~~g~pv~~~ 740 (811)
+++++++|+++|+++|.+|++++++.+|++|||++|+..++++. +.++.+++.+|..++++|++.+
T Consensus 381 ~~~~~~~l~~~g~~ln~~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s 460 (1054)
T 3ne5_A 381 LCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFIS 460 (1054)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999981877889999999998562031739873189999861134444444456788999999999999999999
Q ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7789999999863047---40379999999999999999999999999988528998
Q 003551 741 ITLTKLVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 794 (811)
Q Consensus 741 ~~ltt~~g~~~L~fs~---~~~~~~~~f~~~~~~i~~g~~~~L~~lPvlls~~~p~~ 794 (811)
. +|+++||+||+|++ .+.++.+ .......++++++.+++++|++++++.++.
T Consensus 461 ~-ltt~~~f~pl~~~~g~~~~~~~~~-~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~ 515 (1054)
T 3ne5_A 461 L-LIITLSFIPIFTLEGQEGRLFGPL-AFTKTYAMAGAALLAIVVIPILMGYWIRGK 515 (1054)
T ss_dssp H-HHHHHTTGGGGGCCHHHHHHHHHH-HHHHHHHHHHHHHHTTTTHHHHHHHC----
T ss_pred H-HHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9-999999998887065488999988-999999999999999999999999971366
No 8
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=161.07 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 67999899999999999999999999842501378999999999999999999985034416889999976652103021
Q 003551 630 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 709 (811)
Q Consensus 630 ~~~~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~i 709 (811)
+...+..++...+..+++++++++++++++ ++.++++++++++.+++++|+|+++|.++|..++.++++.+|++|||++
T Consensus 265 ~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l~~i~glil~iGi~VD~~I 343 (741)
T 3aqp_A 265 TLGQDAIQAGIRSALIGTLAIFLLIFAYYG-PHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 899999999999999999999999999981-3789999999999999999999998778159999999999999983420
Q ss_pred HHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 444776603---79999999999998558989897789999999863047403799999999999999999999999999
Q 003551 710 HITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVV 786 (811)
Q Consensus 710 hi~~~f~~~---~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~~~f~~~~~~i~~g~~~~L~~lPvl 786 (811)
|+..+++++ ++++++++.++++++++|++.+. +||++|+++|.+.+...++.| .......++++++.+++++|++
T Consensus 344 ~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~-lTt~i~f~~L~~~~~~~~~~f-a~~~~~gi~~s~~~al~~~P~l 421 (741)
T 3aqp_A 344 LSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVN-IAHLLAAAALYQYATGPVRGF-AVILAIGVVASVFSNLVFSRHL 421 (741)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45899999998599999999999999999999999-999999999999705663269-9999999999999999999999
Q ss_pred HHHHCCC
Q ss_conf 8852899
Q 003551 787 LSVFGPP 793 (811)
Q Consensus 787 ls~~~p~ 793 (811)
++++.++
T Consensus 422 ~~~~~~~ 428 (741)
T 3aqp_A 422 LERLADR 428 (741)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 9998416
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=8.44 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=6.2
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 8997303576661
Q 003551 13 GQDCATQSVLQYF 25 (811)
Q Consensus 13 ~~~C~~~s~~~~~ 25 (811)
|.+|..||++|.+
T Consensus 31 GNTCYmNSvLQ~L 43 (415)
T 1vjv_A 31 GNTCYLNATLQAL 43 (415)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 8513999999999
No 10
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=8.26 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHH
Q ss_conf 45588997303576661
Q 003551 9 MKPLGQDCATQSVLQYF 25 (811)
Q Consensus 9 ~~~~~~~C~~~s~~~~~ 25 (811)
+++.|.+|..||++|.+
T Consensus 6 L~N~GNtCY~NSvLQ~L 22 (355)
T 3i3t_A 6 LRNLGNTCFLNAVLQCL 22 (355)
T ss_dssp BCCCSSTHHHHHHHHHH
T ss_pred CEECCCCHHHHHHHHHH
T ss_conf 58898266989999998
Done!