Query 003553
Match_columns 811
No_of_seqs 362 out of 1610
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 4E-164 8E-169 1391.7 65.0 626 100-805 5-665 (667)
2 KOG2244 Highly conserved prote 100.0 6E-163 1E-167 1321.6 55.6 676 83-804 54-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 3.2E-46 7E-51 366.0 10.0 128 102-229 1-163 (163)
4 cd00249 AGE AGE domain; N-acyl 99.9 3.3E-23 7.2E-28 231.0 30.7 299 318-692 27-338 (384)
5 cd00249 AGE AGE domain; N-acyl 99.9 5.7E-20 1.2E-24 205.0 32.0 332 250-659 16-374 (384)
6 cd02955 SSP411 TRX domain, SSP 99.8 2.6E-21 5.7E-26 183.9 9.3 81 124-204 1-81 (124)
7 PF07221 GlcNAc_2-epim: N-acyl 99.7 1.9E-18 4.2E-23 191.1 9.2 294 325-640 1-330 (346)
8 COG2942 N-acyl-D-glucosamine 2 99.6 2.5E-14 5.4E-19 156.6 20.8 304 313-640 23-358 (388)
9 PF13899 Thioredoxin_7: Thiore 99.6 9.4E-16 2E-20 135.1 7.0 66 122-187 1-66 (82)
10 cd02960 AGR Anterior Gradient 99.6 5E-15 1.1E-19 141.5 6.9 64 119-182 4-67 (130)
11 PF03663 Glyco_hydro_76: Glyco 99.5 1.6E-12 3.4E-17 145.7 24.1 285 251-683 7-311 (370)
12 COG1331 Highly conserved prote 99.5 4.8E-12 1E-16 146.8 22.4 156 342-621 407-571 (667)
13 PF07221 GlcNAc_2-epim: N-acyl 99.4 5.3E-13 1.2E-17 147.8 10.5 163 499-693 11-176 (346)
14 cd02959 ERp19 Endoplasmic reti 99.3 4.8E-12 1E-16 119.4 6.5 65 119-185 1-65 (117)
15 cd02958 UAS UAS family; UAS is 99.2 2.6E-11 5.6E-16 113.3 7.7 60 127-187 6-65 (114)
16 PF03663 Glyco_hydro_76: Glyco 99.2 1.1E-09 2.3E-14 123.0 19.0 167 501-691 86-256 (370)
17 smart00594 UAS UAS domain. 99.0 3.4E-10 7.3E-15 107.5 7.1 65 120-184 9-73 (122)
18 KOG2244 Highly conserved prote 99.0 3.3E-09 7.1E-14 118.8 12.9 194 301-621 474-679 (786)
19 cd02951 SoxW SoxW family; SoxW 99.0 1.2E-09 2.7E-14 103.3 7.3 59 128-186 3-62 (125)
20 cd04791 LanC_SerThrkinase Lant 98.9 4.4E-08 9.5E-13 107.0 18.0 160 504-697 79-238 (321)
21 cd02953 DsbDgamma DsbD gamma f 98.9 2.9E-09 6.3E-14 97.4 6.6 60 128-187 1-60 (104)
22 PRK00293 dipZ thiol:disulfide 98.7 1.9E-08 4.2E-13 118.8 8.7 67 118-185 449-520 (571)
23 PF07470 Glyco_hydro_88: Glyco 98.7 1.5E-06 3.2E-11 96.3 20.8 152 512-691 127-287 (336)
24 COG2942 N-acyl-D-glucosamine 2 98.6 2.6E-06 5.6E-11 94.4 21.3 151 510-687 117-271 (388)
25 COG4232 Thiol:disulfide interc 98.6 4.4E-08 9.6E-13 112.8 5.9 71 121-192 454-527 (569)
26 cd02991 UAS_ETEA UAS family, E 98.4 4E-07 8.6E-12 86.0 5.7 54 127-184 6-63 (116)
27 cd04791 LanC_SerThrkinase Lant 98.3 4.2E-05 9E-10 83.6 20.8 133 512-689 142-274 (321)
28 PF07944 DUF1680: Putative gly 98.2 0.00014 3E-09 85.6 23.6 273 259-685 39-331 (520)
29 PLN00410 U5 snRNP protein, DIM 98.2 2.7E-06 5.9E-11 83.0 6.8 60 130-192 13-74 (142)
30 cd02986 DLP Dim1 family, Dim1- 98.1 2.5E-06 5.4E-11 80.1 4.5 60 128-192 6-65 (114)
31 cd02954 DIM1 Dim1 family; Dim1 98.1 4.1E-06 8.9E-11 78.8 5.8 62 128-192 2-65 (114)
32 PF13098 Thioredoxin_2: Thiore 98.1 8.2E-07 1.8E-11 81.9 -0.0 53 134-186 1-53 (112)
33 COG4225 Predicted unsaturated 97.9 0.0018 3.8E-08 70.9 22.1 272 255-694 17-306 (357)
34 cd02949 TRX_NTR TRX domain, no 97.9 2.2E-05 4.7E-10 71.1 6.0 55 134-191 9-63 (97)
35 PRK10996 thioredoxin 2; Provis 97.8 4E-05 8.7E-10 74.5 6.7 62 127-191 41-102 (139)
36 PF07470 Glyco_hydro_88: Glyco 97.8 0.0015 3.3E-08 72.4 19.6 149 519-694 77-226 (336)
37 KOG0910 Thioredoxin-like prote 97.8 3.8E-05 8.3E-10 75.1 5.8 70 119-192 43-112 (150)
38 cd02984 TRX_PICOT TRX domain, 97.7 6.2E-05 1.3E-09 67.4 6.5 60 129-191 3-64 (97)
39 cd02948 TRX_NDPK TRX domain, T 97.7 6.7E-05 1.5E-09 68.7 6.5 61 127-191 6-67 (102)
40 cd02997 PDI_a_PDIR PDIa family 97.7 7E-05 1.5E-09 67.7 6.5 61 128-191 7-71 (104)
41 cd02950 TxlA TRX-like protein 97.7 4.3E-05 9.3E-10 74.6 5.3 59 130-191 12-72 (142)
42 PHA02278 thioredoxin-like prot 97.7 6.1E-05 1.3E-09 69.7 5.8 60 129-191 5-68 (103)
43 cd02956 ybbN ybbN protein fami 97.7 6.9E-05 1.5E-09 67.2 5.9 53 136-191 10-62 (96)
44 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 7.9E-05 1.7E-09 67.7 5.7 61 128-191 8-68 (101)
45 cd04792 LanM-like LanM-like pr 97.6 0.0046 1E-07 76.8 23.0 252 330-688 475-734 (825)
46 PF06662 C5-epim_C: D-glucuron 97.6 0.0021 4.6E-08 65.8 16.0 143 512-683 33-186 (189)
47 cd04434 LanC_like LanC-like pr 97.6 0.011 2.3E-07 64.5 22.9 159 507-693 98-256 (343)
48 TIGR01126 pdi_dom protein disu 97.6 0.00011 2.4E-09 65.9 5.9 61 128-191 3-65 (102)
49 cd03006 PDI_a_EFP1_N PDIa fami 97.6 9.5E-05 2.1E-09 69.6 5.4 61 128-191 16-80 (113)
50 cd02961 PDI_a_family Protein D 97.6 0.00016 3.4E-09 64.0 6.4 62 127-191 4-67 (101)
51 cd02993 PDI_a_APS_reductase PD 97.6 0.00014 3E-09 67.4 6.2 52 129-183 12-64 (109)
52 cd02996 PDI_a_ERp44 PDIa famil 97.5 0.00015 3.4E-09 66.7 5.7 62 127-191 7-74 (108)
53 cd03000 PDI_a_TMX3 PDIa family 97.5 0.00016 3.6E-09 66.1 5.7 61 127-191 5-68 (104)
54 PF07944 DUF1680: Putative gly 97.5 0.0013 2.8E-08 77.6 14.4 137 512-688 63-207 (520)
55 cd02985 TRX_CDSP32 TRX family, 97.5 0.00018 3.9E-09 66.1 5.7 46 137-186 14-59 (103)
56 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.00024 5.3E-09 64.7 6.4 61 128-191 8-69 (104)
57 cd04793 LanC LanC is the cycla 97.4 0.025 5.4E-07 63.9 23.6 142 515-694 178-331 (382)
58 KOG0907 Thioredoxin [Posttrans 97.4 0.0002 4.2E-09 66.8 5.1 60 128-191 11-70 (106)
59 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00031 6.6E-09 63.3 5.9 53 129-184 8-63 (104)
60 PTZ00051 thioredoxin; Provisio 97.3 0.00043 9.4E-09 62.1 6.1 60 128-191 8-67 (98)
61 cd02963 TRX_DnaJ TRX domain, D 97.3 0.00025 5.4E-09 66.1 4.4 53 136-191 22-75 (111)
62 cd02999 PDI_a_ERp44_like PDIa 97.3 0.00028 6.1E-09 64.6 4.5 53 135-191 15-68 (100)
63 cd02947 TRX_family TRX family; 97.3 0.00046 9.9E-09 59.6 5.4 58 130-191 2-59 (93)
64 TIGR01295 PedC_BrcD bacterioci 97.3 0.00042 9.1E-09 66.0 5.5 57 128-187 13-69 (122)
65 cd02989 Phd_like_TxnDC9 Phosdu 97.3 0.00047 1E-08 64.7 5.7 60 128-191 12-71 (113)
66 COG2143 Thioredoxin-related pr 97.2 0.00043 9.2E-09 67.8 5.3 117 128-288 32-149 (182)
67 cd03002 PDI_a_MPD1_like PDI fa 97.2 0.00064 1.4E-08 62.2 5.9 59 130-191 9-70 (109)
68 cd02952 TRP14_like Human TRX-r 97.2 0.00059 1.3E-08 64.9 5.7 54 129-185 10-72 (119)
69 TIGR01068 thioredoxin thioredo 97.2 0.00093 2E-08 59.5 6.6 60 129-191 4-64 (101)
70 COG4225 Predicted unsaturated 97.2 0.0089 1.9E-07 65.6 15.1 145 544-697 98-246 (357)
71 PF00085 Thioredoxin: Thioredo 97.2 0.00043 9.4E-09 62.0 4.2 60 129-191 7-67 (103)
72 cd02962 TMX2 TMX2 family; comp 97.1 0.0007 1.5E-08 67.1 6.0 61 128-191 35-98 (152)
73 COG3533 Uncharacterized protei 97.1 0.011 2.4E-07 67.5 15.1 174 299-620 84-263 (589)
74 cd03005 PDI_a_ERp46 PDIa famil 97.1 0.001 2.2E-08 59.9 5.8 61 127-191 6-69 (102)
75 cd03001 PDI_a_P5 PDIa family, 97.1 0.0012 2.7E-08 59.4 6.4 62 127-191 6-68 (103)
76 PRK09381 trxA thioredoxin; Pro 97.1 0.00095 2.1E-08 61.4 5.5 54 135-191 18-71 (109)
77 PF06662 C5-epim_C: D-glucuron 97.0 0.017 3.8E-07 59.2 14.5 45 344-390 29-73 (189)
78 cd02998 PDI_a_ERp38 PDIa famil 97.0 0.001 2.3E-08 59.9 5.1 55 134-191 14-71 (105)
79 cd02975 PfPDO_like_N Pyrococcu 96.9 0.0014 3E-08 61.5 5.3 59 130-192 14-72 (113)
80 PF00759 Glyco_hydro_9: Glycos 96.9 0.0051 1.1E-07 70.8 10.9 90 510-617 155-247 (444)
81 COG3533 Uncharacterized protei 96.9 0.073 1.6E-06 61.1 19.4 125 512-690 134-262 (589)
82 PLN03009 cellulase 96.8 0.023 5E-07 66.5 15.6 86 512-613 176-265 (495)
83 cd02994 PDI_a_TMX PDIa family, 96.8 0.0021 4.7E-08 58.1 5.5 60 128-192 8-68 (101)
84 PTZ00443 Thioredoxin domain-co 96.8 0.0024 5.2E-08 67.3 6.4 52 137-191 51-102 (224)
85 PTZ00470 glycoside hydrolase f 96.7 0.16 3.4E-06 60.0 21.6 291 335-701 149-465 (522)
86 cd02992 PDI_a_QSOX PDIa family 96.6 0.0025 5.5E-08 59.7 4.7 61 128-191 8-74 (114)
87 cd04794 euk_LANCL eukaryotic L 96.6 0.19 4.1E-06 56.0 20.3 137 514-693 170-307 (343)
88 PLN02420 endoglucanase 96.5 0.073 1.6E-06 62.6 16.9 88 512-614 190-277 (525)
89 COG4403 LcnDR2 Lantibiotic mod 96.5 0.21 4.5E-06 60.9 20.7 222 301-623 597-831 (963)
90 TIGR01130 ER_PDI_fam protein d 96.5 0.0029 6.2E-08 72.4 5.3 62 127-191 7-71 (462)
91 cd04434 LanC_like LanC-like pr 96.5 1.3 2.8E-05 48.3 25.8 133 514-688 164-298 (343)
92 PLN02345 endoglucanase 96.5 0.053 1.2E-06 63.0 15.5 82 512-611 145-228 (469)
93 PLN02266 endoglucanase 96.5 0.15 3.2E-06 59.9 19.2 81 512-614 193-281 (510)
94 cd04792 LanM-like LanM-like pr 96.5 0.92 2E-05 56.6 27.5 139 511-694 645-785 (825)
95 PF06917 Pectate_lyase_2: Peri 96.5 1 2.2E-05 52.0 24.9 130 544-692 327-473 (557)
96 cd02889 SQCY Squalene cyclase 96.5 0.16 3.5E-06 56.2 18.6 45 345-390 92-138 (348)
97 PLN02340 endoglucanase 96.4 0.046 1E-06 65.4 14.8 86 512-615 179-266 (614)
98 PLN02909 Endoglucanase 96.4 0.13 2.7E-06 60.2 17.9 79 512-612 183-264 (486)
99 PLN02171 endoglucanase 96.4 0.11 2.3E-06 62.6 17.6 84 512-615 179-267 (629)
100 COG3118 Thioredoxin domain-con 96.4 0.0039 8.4E-08 67.4 5.1 53 136-191 41-93 (304)
101 cd02957 Phd_like Phosducin (Ph 96.4 0.0061 1.3E-07 56.8 5.5 49 138-191 24-72 (113)
102 KOG2787 Lanthionine synthetase 96.3 0.015 3.3E-07 63.1 9.0 86 505-620 273-361 (403)
103 PHA02125 thioredoxin-like prot 96.3 0.0048 1E-07 53.4 4.1 41 142-191 2-42 (75)
104 PLN02613 endoglucanase 96.2 0.21 4.6E-06 58.5 18.2 80 511-612 174-256 (498)
105 cd02965 HyaE HyaE family; HyaE 96.2 0.0061 1.3E-07 57.3 4.6 69 121-192 10-80 (111)
106 PTZ00102 disulphide isomerase; 96.2 0.0058 1.2E-07 70.7 5.3 61 128-191 39-102 (477)
107 TIGR00424 APS_reduc 5'-adenyly 96.1 0.0088 1.9E-07 69.2 6.3 47 135-184 368-415 (463)
108 PTZ00470 glycoside hydrolase f 96.1 0.033 7E-07 65.6 11.0 99 587-690 157-256 (522)
109 PLN02308 endoglucanase 96.0 0.2 4.4E-06 58.6 17.0 84 512-613 175-262 (492)
110 TIGR00385 dsbE periplasmic pro 96.0 0.015 3.3E-07 58.4 6.8 44 134-183 59-102 (173)
111 PLN00119 endoglucanase 96.0 0.2 4.3E-06 58.6 16.6 84 512-612 180-264 (489)
112 PF01532 Glyco_hydro_47: Glyco 95.9 0.34 7.3E-06 56.4 18.3 300 300-671 98-432 (452)
113 PLN02309 5'-adenylylsulfate re 95.9 0.012 2.6E-07 68.1 6.3 57 128-187 352-413 (457)
114 PF01532 Glyco_hydro_47: Glyco 95.9 0.059 1.3E-06 62.6 11.8 166 507-697 75-252 (452)
115 PF05147 LANC_like: Lanthionin 95.9 0.0064 1.4E-07 67.0 3.7 249 344-690 7-262 (355)
116 PTZ00102 disulphide isomerase; 95.9 0.006 1.3E-07 70.6 3.6 61 128-191 364-427 (477)
117 cd03011 TlpA_like_ScsD_MtbDsbE 95.7 0.013 2.8E-07 54.7 4.4 53 130-188 12-65 (123)
118 cd03010 TlpA_like_DsbE TlpA-li 95.7 0.023 5E-07 53.5 6.1 48 129-182 16-64 (127)
119 cd02987 Phd_like_Phd Phosducin 95.5 0.019 4.2E-07 58.2 5.3 48 139-191 84-131 (175)
120 TIGR02187 GlrX_arch Glutaredox 95.5 0.022 4.8E-07 59.3 5.8 62 127-192 121-183 (215)
121 cd03065 PDI_b_Calsequestrin_N 95.5 0.02 4.4E-07 54.5 4.9 63 128-192 16-84 (120)
122 cd02964 TryX_like_family Trypa 95.3 0.024 5.1E-07 54.2 4.8 53 130-185 9-64 (132)
123 cd03008 TryX_like_RdCVF Trypar 95.3 0.03 6.4E-07 55.3 5.5 49 134-185 21-77 (146)
124 cd04793 LanC LanC is the cycla 95.3 0.84 1.8E-05 51.6 18.1 84 512-622 247-330 (382)
125 TIGR00411 redox_disulf_1 small 95.3 0.022 4.7E-07 49.2 4.1 48 142-192 3-50 (82)
126 cd02982 PDI_b'_family Protein 95.2 0.03 6.5E-07 50.5 4.8 51 138-191 12-62 (103)
127 PRK15412 thiol:disulfide inter 95.2 0.032 6.9E-07 56.8 5.6 45 136-186 66-110 (185)
128 KOG0908 Thioredoxin-like prote 95.1 0.017 3.7E-07 60.9 3.5 53 132-190 15-69 (288)
129 cd03009 TryX_like_TryX_NRX Try 95.1 0.02 4.3E-07 54.4 3.7 25 134-158 14-38 (131)
130 cd04794 euk_LANCL eukaryotic L 95.0 0.34 7.4E-06 54.0 13.8 78 515-622 230-307 (343)
131 PLN02175 endoglucanase 95.0 0.58 1.3E-05 54.7 15.9 86 512-612 172-258 (484)
132 cd02892 SQCY_1 Squalene cyclas 95.0 8.2 0.00018 47.0 26.2 60 323-390 359-421 (634)
133 TIGR01577 oligosac_amyl oligos 94.9 3.3 7.1E-05 50.2 22.6 58 508-574 413-470 (616)
134 cd02966 TlpA_like_family TlpA- 94.7 0.036 7.8E-07 49.6 4.2 53 129-184 10-63 (116)
135 cd02967 mauD Methylamine utili 94.7 0.055 1.2E-06 49.7 5.5 40 137-179 20-59 (114)
136 PF13905 Thioredoxin_8: Thiore 94.6 0.061 1.3E-06 47.9 5.3 43 138-183 1-45 (95)
137 COG4833 Predicted glycosyl hyd 94.6 0.37 8E-06 51.5 11.7 155 493-671 111-283 (377)
138 cd02973 TRX_GRX_like Thioredox 94.6 0.049 1.1E-06 45.5 4.3 46 142-191 3-48 (67)
139 cd02990 UAS_FAF1 UAS family, F 94.6 0.11 2.5E-06 50.6 7.3 57 127-183 6-66 (136)
140 TIGR01130 ER_PDI_fam protein d 94.2 0.066 1.4E-06 61.3 5.7 48 134-184 360-410 (462)
141 cd03026 AhpF_NTD_C TRX-GRX-lik 93.6 0.12 2.6E-06 46.5 5.1 57 132-192 5-62 (89)
142 TIGR02740 TraF-like TraF-like 93.5 0.11 2.4E-06 56.3 5.6 24 135-158 163-186 (271)
143 PF06917 Pectate_lyase_2: Peri 93.1 0.36 7.8E-06 55.6 8.8 138 467-632 317-481 (557)
144 cd01659 TRX_superfamily Thiore 92.5 0.099 2.1E-06 40.6 2.6 44 142-189 1-44 (69)
145 COG0526 TrxA Thiol-disulfide i 92.3 0.27 5.9E-06 43.1 5.5 50 138-193 32-85 (127)
146 TIGR00412 redox_disulf_2 small 92.3 0.14 3E-06 44.5 3.4 35 143-180 3-37 (76)
147 cd03007 PDI_a_ERp29_N PDIa fam 92.1 0.19 4E-06 47.8 4.2 58 127-191 7-74 (116)
148 cd02896 complement_C3_C4_C5 Pr 92.0 18 0.00038 39.7 20.3 77 300-390 48-124 (297)
149 cd02892 SQCY_1 Squalene cyclas 92.0 28 0.0006 42.5 23.7 116 245-387 233-349 (634)
150 TIGR01507 hopene_cyclase squal 91.9 34 0.00075 41.8 24.2 45 344-390 380-424 (635)
151 TIGR01626 ytfJ_HI0045 conserve 91.8 0.23 5.1E-06 50.8 5.0 69 117-196 43-118 (184)
152 PF06202 GDE_C: Amylo-alpha-1, 91.8 14 0.00031 41.9 19.8 113 281-396 91-225 (370)
153 TIGR02187 GlrX_arch Glutaredox 91.8 0.16 3.5E-06 52.9 3.9 54 136-192 18-74 (215)
154 TIGR02738 TrbB type-F conjugat 91.7 0.23 4.9E-06 49.4 4.7 24 134-157 46-69 (153)
155 PRK14018 trifunctional thiored 91.7 0.23 5E-06 58.5 5.4 22 137-158 55-76 (521)
156 KOG0190 Protein disulfide isom 91.5 0.19 4E-06 58.5 4.2 80 103-186 344-433 (493)
157 KOG2204 Mannosyl-oligosacchari 90.6 8.9 0.00019 45.1 16.4 285 346-701 263-571 (625)
158 COG4403 LcnDR2 Lantibiotic mod 90.5 7.1 0.00015 48.3 16.2 140 505-694 690-831 (963)
159 TIGR02661 MauD methylamine deh 90.4 0.42 9E-06 48.9 5.2 24 135-158 71-94 (189)
160 PF08534 Redoxin: Redoxin; In 90.4 0.42 9.1E-06 46.0 5.0 54 131-187 21-76 (146)
161 PRK03147 thiol-disulfide oxido 90.2 0.48 1E-05 46.9 5.3 51 132-185 55-106 (173)
162 TIGR01577 oligosac_amyl oligos 89.9 6.6 0.00014 47.6 15.8 145 511-690 300-455 (616)
163 PTZ00062 glutaredoxin; Provisi 89.5 0.66 1.4E-05 48.3 5.9 51 128-182 6-57 (204)
164 cd02988 Phd_like_VIAF Phosduci 89.4 0.43 9.3E-06 49.2 4.4 42 138-183 102-143 (192)
165 KOG2204 Mannosyl-oligosacchari 88.5 3.6 7.7E-05 48.3 11.2 93 588-689 265-363 (625)
166 PF05147 LANC_like: Lanthionin 88.2 2 4.4E-05 47.2 9.0 134 512-688 170-306 (355)
167 cd03012 TlpA_like_DipZ_like Tl 88.1 0.55 1.2E-05 44.3 3.9 28 130-157 15-42 (126)
168 TIGR02474 pec_lyase pectate ly 87.6 0.67 1.4E-05 50.7 4.6 40 349-389 48-87 (290)
169 KOG2431 1, 2-alpha-mannosidase 87.5 57 0.0012 37.6 19.3 304 334-671 168-521 (546)
170 TIGR03463 osq_cycl 2,3-oxidosq 87.5 79 0.0017 38.7 26.6 61 322-390 357-421 (634)
171 KOG1752 Glutaredoxin and relat 87.0 1.2 2.7E-05 41.5 5.3 53 131-192 7-60 (104)
172 PF00759 Glyco_hydro_9: Glycos 86.8 21 0.00046 41.2 16.7 155 263-433 51-244 (444)
173 TIGR02180 GRX_euk Glutaredoxin 86.5 1.2 2.6E-05 38.4 4.8 37 143-184 2-38 (84)
174 PLN02919 haloacid dehalogenase 86.1 0.99 2.1E-05 58.0 5.7 40 137-179 419-459 (1057)
175 PRK13728 conjugal transfer pro 86.1 0.83 1.8E-05 46.7 4.0 38 142-185 73-111 (181)
176 cd02889 SQCY Squalene cyclase 86.1 23 0.0005 39.1 15.9 142 545-692 43-204 (348)
177 KOG2429 Glycosyl hydrolase, fa 86.1 10 0.00022 44.7 13.0 35 589-623 375-409 (622)
178 PLN02399 phospholipid hydroper 86.0 1.3 2.8E-05 47.3 5.6 47 132-181 93-140 (236)
179 cd02968 SCO SCO (an acronym fo 85.8 1.1 2.3E-05 42.8 4.5 34 136-172 20-54 (142)
180 PF06110 DUF953: Eukaryotic pr 85.6 0.72 1.6E-05 44.1 3.1 48 128-181 9-66 (119)
181 cd00688 ISOPREN_C2_like This g 85.2 51 0.0011 34.3 18.8 76 302-390 50-125 (300)
182 PRK11097 endo-1,4-D-glucanase; 85.1 13 0.00028 42.4 13.2 131 551-690 74-213 (376)
183 TIGR02474 pec_lyase pectate ly 85.1 34 0.00074 37.7 16.0 91 490-602 29-122 (290)
184 PLN02993 lupeol synthase 85.0 7.8 0.00017 48.0 12.2 83 301-390 513-611 (763)
185 KOG0190 Protein disulfide isom 84.8 0.73 1.6E-05 53.8 3.3 94 128-232 32-132 (493)
186 KOG2501 Thioredoxin, nucleored 84.5 2.4 5.1E-05 42.4 6.3 73 130-211 25-101 (157)
187 cd03419 GRX_GRXh_1_2_like Glut 84.4 3 6.5E-05 35.8 6.3 35 143-184 3-37 (82)
188 TIGR01787 squalene_cyclas squa 84.1 15 0.00033 44.6 14.3 119 245-389 385-529 (621)
189 TIGR00365 monothiol glutaredox 84.0 2.3 5.1E-05 38.8 5.6 50 129-188 3-56 (97)
190 PF05592 Bac_rhamnosid: Bacter 84.0 8 0.00017 45.5 11.6 114 504-629 199-326 (509)
191 TIGR02189 GlrX-like_plant Glut 83.9 2 4.3E-05 39.4 5.2 36 143-188 11-47 (99)
192 PTZ00056 glutathione peroxidas 83.8 1.7 3.6E-05 45.0 5.2 42 137-181 38-80 (199)
193 PLN03012 Camelliol C synthase 83.4 64 0.0014 40.2 19.0 60 324-390 471-534 (759)
194 TIGR02200 GlrX_actino Glutared 83.4 2 4.3E-05 36.2 4.7 49 142-204 2-52 (77)
195 KOG2431 1, 2-alpha-mannosidase 82.9 3.4 7.3E-05 46.9 7.3 124 549-692 151-277 (546)
196 KOG0191 Thioredoxin/protein di 82.9 1.4 2.9E-05 50.2 4.4 58 131-191 40-97 (383)
197 PF06202 GDE_C: Amylo-alpha-1, 82.9 32 0.0007 39.0 15.4 141 548-692 50-209 (370)
198 TIGR02196 GlrX_YruB Glutaredox 82.8 2.7 5.9E-05 34.6 5.2 37 142-187 2-38 (74)
199 cd00340 GSH_Peroxidase Glutath 82.6 1.9 4.1E-05 42.2 4.8 46 132-181 16-62 (152)
200 PLN02993 lupeol synthase 82.4 70 0.0015 39.9 18.9 60 324-390 471-534 (763)
201 KOG4277 Uncharacterized conser 82.1 1.2 2.5E-05 48.5 3.2 60 128-191 34-96 (468)
202 KOG3425 Uncharacterized conser 81.9 3.6 7.9E-05 39.2 6.0 52 128-185 12-77 (128)
203 PF09492 Pec_lyase: Pectic aci 81.2 1.7 3.6E-05 47.7 4.1 47 342-389 33-82 (289)
204 TIGR01561 gde_arch glycogen de 81.0 37 0.0008 41.0 15.6 112 509-633 348-480 (575)
205 PF07678 A2M_comp: A-macroglob 80.5 27 0.00058 37.2 13.0 61 319-389 9-69 (246)
206 KOG2430 Glycosyl hydrolase, fa 79.8 9.9 0.00022 42.1 9.3 67 544-620 324-394 (587)
207 PRK10137 alpha-glucosidase; Pr 79.2 1.8E+02 0.0039 36.5 22.1 46 588-633 582-634 (786)
208 cd03017 PRX_BCP Peroxiredoxin 78.9 3.1 6.6E-05 39.5 4.7 43 137-182 22-66 (140)
209 cd02971 PRX_family Peroxiredox 78.7 2.3 4.9E-05 40.3 3.8 42 137-181 21-64 (140)
210 TIGR01787 squalene_cyclas squa 78.7 1.7E+02 0.0037 35.8 21.5 81 301-390 388-481 (621)
211 KOG2787 Lanthionine synthetase 78.6 1.2E+02 0.0026 34.0 21.6 113 544-684 241-354 (403)
212 PLN02412 probable glutathione 78.5 2.1 4.6E-05 42.8 3.7 42 137-182 28-71 (167)
213 cd02976 NrdH NrdH-redoxin (Nrd 78.1 4.5 9.7E-05 33.3 5.0 17 142-158 2-18 (73)
214 PHA03050 glutaredoxin; Provisi 77.1 6.7 0.00015 36.7 6.3 16 142-157 15-30 (108)
215 TIGR01535 glucan_glucosid gluc 77.1 48 0.001 40.7 15.0 135 512-687 301-441 (648)
216 TIGR02540 gpx7 putative glutat 76.7 1.5 3.2E-05 43.0 1.9 48 131-181 15-63 (153)
217 PRK09437 bcp thioredoxin-depen 76.6 4.7 0.0001 39.2 5.4 45 136-183 28-74 (154)
218 TIGR03463 osq_cycl 2,3-oxidosq 76.3 41 0.00088 41.1 14.3 157 512-691 310-489 (634)
219 PRK10137 alpha-glucosidase; Pr 76.0 2.2E+02 0.0048 35.8 20.9 52 344-395 577-636 (786)
220 KOG0912 Thiol-disulfide isomer 75.3 2.3 4.9E-05 46.6 3.0 57 135-192 10-69 (375)
221 cd03018 PRX_AhpE_like Peroxire 75.1 3.2 6.8E-05 39.9 3.7 48 132-182 21-71 (149)
222 PLN02266 endoglucanase 74.5 91 0.002 37.2 16.0 122 544-685 130-281 (510)
223 PF00578 AhpC-TSA: AhpC/TSA fa 74.1 2.2 4.8E-05 39.4 2.3 21 137-157 24-45 (124)
224 COG4833 Predicted glycosyl hyd 73.7 6.1 0.00013 42.6 5.6 90 510-631 47-138 (377)
225 KOG2507 Ubiquitin regulatory p 73.4 5.5 0.00012 45.3 5.4 56 127-183 8-63 (506)
226 TIGR01535 glucan_glucosid gluc 73.1 2.3E+02 0.0049 35.0 19.4 115 247-381 250-386 (648)
227 cd03028 GRX_PICOT_like Glutare 73.0 5.5 0.00012 35.7 4.4 20 138-157 7-30 (90)
228 cd02066 GRX_family Glutaredoxi 72.2 9.6 0.00021 31.0 5.5 35 143-187 3-38 (72)
229 PLN02345 endoglucanase 71.9 1.4E+02 0.0029 35.4 16.5 118 544-682 82-228 (469)
230 PF02966 DIM1: Mitosis protein 71.8 6 0.00013 38.4 4.6 56 134-192 16-71 (133)
231 PLN03012 Camelliol C synthase 71.8 19 0.00042 44.6 10.0 65 548-614 639-710 (759)
232 cd02969 PRX_like1 Peroxiredoxi 71.7 8.8 0.00019 38.1 6.1 42 137-181 24-68 (171)
233 cd03027 GRX_DEP Glutaredoxin ( 70.9 8.6 0.00019 32.6 5.0 38 142-189 3-41 (73)
234 PLN02171 endoglucanase 70.2 1.6E+02 0.0036 36.0 17.2 122 544-686 116-267 (629)
235 PRK10606 btuE putative glutath 69.7 2.7 5.9E-05 43.0 1.9 47 131-181 18-65 (183)
236 PF14595 Thioredoxin_9: Thiore 69.2 2.7 5.8E-05 40.6 1.7 81 127-220 29-124 (129)
237 cd02894 GGTase-II Geranylgeran 68.1 1.9E+02 0.004 31.5 19.6 69 550-633 198-268 (287)
238 cd02890 PTase Protein prenyltr 67.0 74 0.0016 34.4 12.5 122 246-390 45-167 (286)
239 PLN02308 endoglucanase 66.8 2.3E+02 0.005 33.7 17.1 121 544-684 112-262 (492)
240 cd00688 ISOPREN_C2_like This g 66.5 93 0.002 32.3 12.8 128 246-388 50-179 (300)
241 KOG0191 Thioredoxin/protein di 65.8 4.1 8.9E-05 46.2 2.6 57 132-191 156-214 (383)
242 PF00462 Glutaredoxin: Glutare 64.8 16 0.00034 29.7 5.2 39 143-191 2-41 (60)
243 PRK10638 glutaredoxin 3; Provi 64.0 9.9 0.00021 33.2 4.1 16 142-157 4-19 (83)
244 PF13249 Prenyltrans_2: Prenyl 63.9 26 0.00056 31.8 7.1 22 367-389 91-112 (113)
245 TIGR01507 hopene_cyclase squal 63.7 61 0.0013 39.7 12.0 125 249-390 337-492 (635)
246 PF01270 Glyco_hydro_8: Glycos 63.6 24 0.00051 39.7 8.0 99 512-627 116-216 (342)
247 PRK11200 grxA glutaredoxin 1; 63.0 17 0.00038 31.8 5.5 41 141-185 2-42 (85)
248 cd03014 PRX_Atyp2cys Peroxired 62.7 8.5 0.00018 36.8 3.8 20 137-156 25-45 (143)
249 cd03015 PRX_Typ2cys Peroxiredo 62.6 11 0.00023 37.8 4.5 48 132-182 23-72 (173)
250 KOG3414 Component of the U4/U6 62.6 15 0.00034 35.4 5.2 54 135-192 20-74 (142)
251 PF09492 Pec_lyase: Pectic aci 62.3 29 0.00063 38.2 8.1 84 499-604 33-119 (289)
252 PLN02909 Endoglucanase 62.2 2.8E+02 0.006 33.0 16.6 119 543-683 119-264 (486)
253 PLN00119 endoglucanase 61.7 3.2E+02 0.007 32.5 17.0 119 544-683 117-264 (489)
254 KOG0911 Glutaredoxin-related p 61.6 3.5 7.6E-05 43.3 0.9 53 137-193 16-68 (227)
255 PRK15317 alkyl hydroperoxide r 61.2 14 0.0003 43.8 5.9 61 127-191 104-165 (517)
256 TIGR03137 AhpC peroxiredoxin. 61.0 11 0.00025 38.3 4.5 21 136-156 29-50 (187)
257 PLN02613 endoglucanase 60.8 3E+02 0.0065 32.8 16.6 119 544-684 112-257 (498)
258 TIGR02194 GlrX_NrdH Glutaredox 60.3 15 0.00033 31.1 4.5 39 143-191 2-41 (72)
259 PRK10329 glutaredoxin-like pro 60.3 18 0.00039 31.9 5.1 38 142-189 3-41 (81)
260 TIGR02183 GRXA Glutaredoxin, G 59.9 16 0.00036 32.3 4.8 17 142-158 2-18 (86)
261 cd02970 PRX_like2 Peroxiredoxi 59.8 9.1 0.0002 36.4 3.4 43 138-183 23-67 (149)
262 TIGR02190 GlrX-dom Glutaredoxi 59.4 17 0.00036 31.5 4.7 17 142-158 10-26 (79)
263 TIGR03143 AhpF_homolog putativ 59.1 16 0.00035 43.7 6.0 63 125-191 462-525 (555)
264 PRK10824 glutaredoxin-4; Provi 57.9 23 0.00051 33.6 5.7 52 128-189 5-60 (115)
265 PRK10877 protein disulfide iso 57.7 14 0.0003 39.2 4.6 42 131-179 100-141 (232)
266 PF02630 SCO1-SenC: SCO1/SenC; 57.3 5.8 0.00013 40.1 1.6 71 120-193 34-111 (174)
267 KOG2430 Glycosyl hydrolase, fa 57.2 58 0.0013 36.3 9.2 96 506-620 182-283 (587)
268 cd03023 DsbA_Com1_like DsbA fa 57.1 11 0.00024 35.9 3.4 23 136-158 3-25 (154)
269 PRK00522 tpx lipid hydroperoxi 56.9 16 0.00034 36.5 4.6 21 137-157 43-64 (167)
270 PRK11097 endo-1,4-D-glucanase; 56.0 89 0.0019 35.8 10.8 105 501-621 108-215 (376)
271 PLN02420 endoglucanase 55.6 4.4E+02 0.0095 31.7 17.2 146 512-686 103-278 (525)
272 PTZ00256 glutathione peroxidas 55.5 7.6 0.00017 39.4 2.1 46 133-181 35-82 (183)
273 COG3408 GDB1 Glycogen debranch 55.0 87 0.0019 38.4 11.2 99 544-644 362-482 (641)
274 cd03418 GRX_GRXb_1_3_like Glut 54.5 26 0.00057 29.4 5.0 17 142-158 2-18 (75)
275 PF03200 Glyco_hydro_63: Manno 53.3 1.3E+02 0.0028 38.0 12.6 54 507-572 560-613 (801)
276 PRK13270 treF trehalase; Provi 52.9 4.3E+02 0.0092 32.0 16.2 129 506-666 347-481 (549)
277 PLN02175 endoglucanase 51.9 4.1E+02 0.0089 31.6 15.7 121 544-683 108-258 (484)
278 PRK12759 bifunctional gluaredo 51.5 22 0.00047 41.1 5.2 40 142-191 4-44 (410)
279 PF04685 DUF608: Protein of un 49.7 60 0.0013 36.9 8.3 106 508-631 98-217 (365)
280 PRK13271 treA trehalase; Provi 49.6 4.3E+02 0.0092 32.1 15.6 104 505-632 336-443 (569)
281 cd03019 DsbA_DsbA DsbA family, 49.5 32 0.0007 33.8 5.5 24 137-160 14-37 (178)
282 PLN03009 cellulase 49.3 5.3E+02 0.011 30.8 18.2 146 512-684 90-265 (495)
283 PF01204 Trehalase: Trehalase; 49.2 3.2E+02 0.0069 32.6 14.5 96 504-621 303-402 (512)
284 cd02897 A2M_2 Proteins similar 49.1 60 0.0013 35.3 8.0 77 301-389 46-122 (292)
285 TIGR02181 GRX_bact Glutaredoxi 48.9 26 0.00056 30.0 4.1 16 143-158 2-17 (79)
286 PF04685 DUF608: Protein of un 48.8 71 0.0015 36.4 8.7 38 342-379 96-137 (365)
287 PF01270 Glyco_hydro_8: Glycos 48.4 1.7E+02 0.0037 32.9 11.6 126 551-692 75-211 (342)
288 COG1999 Uncharacterized protei 47.8 20 0.00043 37.5 3.8 60 130-192 59-126 (207)
289 TIGR03140 AhpF alkyl hydropero 47.7 30 0.00065 40.9 5.8 63 125-191 103-166 (515)
290 TIGR01561 gde_arch glycogen de 47.0 3.5E+02 0.0075 32.9 14.4 138 548-692 313-468 (575)
291 COG0695 GrxC Glutaredoxin and 46.9 33 0.00072 30.1 4.5 16 143-158 4-19 (80)
292 PF05592 Bac_rhamnosid: Bacter 46.2 5.3E+02 0.012 30.2 15.9 195 469-693 109-319 (509)
293 PTZ00062 glutaredoxin; Provisi 45.0 46 0.001 34.8 6.0 51 131-192 106-161 (204)
294 PRK11657 dsbG disulfide isomer 44.4 29 0.00063 37.3 4.5 30 130-159 109-138 (251)
295 cd03020 DsbA_DsbC_DsbG DsbA fa 44.2 21 0.00046 36.4 3.4 34 129-162 68-101 (197)
296 cd02896 complement_C3_C4_C5 Pr 44.1 1.9E+02 0.0041 31.7 10.9 116 248-393 170-286 (297)
297 cd03029 GRX_hybridPRX5 Glutare 43.9 44 0.00094 28.1 4.7 15 143-157 4-18 (72)
298 PF05768 DUF836: Glutaredoxin- 43.8 29 0.00064 30.3 3.7 45 142-192 2-47 (81)
299 PRK13271 treA trehalase; Provi 40.9 65 0.0014 38.9 7.0 42 593-634 351-396 (569)
300 PRK10382 alkyl hydroperoxide r 39.7 36 0.00077 35.0 4.1 43 137-181 30-73 (187)
301 PRK10954 periplasmic protein d 39.3 65 0.0014 33.3 6.1 43 138-181 37-80 (207)
302 PF04545 Sigma70_r4: Sigma-70, 39.1 49 0.0011 26.0 4.0 28 464-491 22-49 (50)
303 PF13243 Prenyltrans_1: Prenyl 38.3 7.8 0.00017 35.2 -0.8 39 350-389 28-66 (109)
304 PF13462 Thioredoxin_4: Thiore 37.9 45 0.00097 32.2 4.4 44 136-181 10-54 (162)
305 TIGR02393 RpoD_Cterm RNA polym 36.7 69 0.0015 33.8 5.9 29 464-492 198-226 (238)
306 KOG3760 Heparan sulfate-glucur 36.6 2.5E+02 0.0055 32.3 10.2 138 510-682 418-580 (594)
307 PRK01655 spxA transcriptional 36.4 62 0.0013 31.2 5.0 47 142-198 2-49 (131)
308 COG3387 SGA1 Glucoamylase and 36.4 4.7E+02 0.01 32.0 13.5 230 249-619 245-513 (612)
309 PF06053 DUF929: Domain of unk 36.0 19 0.00041 38.8 1.5 20 136-155 56-75 (249)
310 PF13728 TraF: F plasmid trans 33.7 83 0.0018 33.0 5.8 40 138-183 120-160 (215)
311 KOG0366 Protein geranylgeranyl 33.0 7E+02 0.015 27.4 16.0 72 551-635 213-284 (329)
312 PF05426 Alginate_lyase: Algin 32.0 6.4E+02 0.014 26.7 14.4 36 341-376 52-87 (272)
313 PRK05901 RNA polymerase sigma 30.4 88 0.0019 37.3 5.8 47 425-493 452-498 (509)
314 PF03200 Glyco_hydro_63: Manno 30.0 2.7E+02 0.0058 35.3 10.2 48 588-635 565-616 (801)
315 PF01204 Trehalase: Trehalase; 28.9 88 0.0019 37.3 5.6 44 591-634 317-364 (512)
316 TIGR02957 SigX4 RNA polymerase 28.1 1.2E+02 0.0025 33.0 6.0 53 464-523 126-178 (281)
317 PF08281 Sigma70_r4_2: Sigma-7 28.1 78 0.0017 25.1 3.5 27 464-490 28-54 (54)
318 PRK15000 peroxidase; Provision 28.0 45 0.00096 34.5 2.6 44 137-182 33-77 (200)
319 cd02977 ArsC_family Arsenate R 27.5 75 0.0016 29.0 3.8 44 143-196 2-46 (105)
320 PF02011 Glyco_hydro_48: Glyco 27.4 1.9E+02 0.0042 34.6 7.7 102 509-626 404-529 (619)
321 PRK05949 RNA polymerase sigma 27.2 1.7E+02 0.0037 32.7 7.2 46 425-492 271-316 (327)
322 PF04967 HTH_10: HTH DNA bindi 27.1 89 0.0019 25.7 3.6 29 463-491 24-52 (53)
323 PTZ00253 tryparedoxin peroxida 27.1 48 0.001 34.0 2.7 22 136-157 34-56 (199)
324 PRK13190 putative peroxiredoxi 26.9 48 0.001 34.3 2.6 20 137-156 26-46 (202)
325 PRK07405 RNA polymerase sigma 26.2 1.8E+02 0.004 32.3 7.2 29 464-492 278-306 (317)
326 PF07678 A2M_comp: A-macroglob 25.9 1.7E+02 0.0037 31.1 6.7 116 247-393 112-233 (246)
327 PRK07921 RNA polymerase sigma 24.9 2E+02 0.0044 32.2 7.3 29 464-492 284-312 (324)
328 PLN02340 endoglucanase 24.9 1.4E+03 0.03 28.2 17.6 120 544-684 116-264 (614)
329 PRK07598 RNA polymerase sigma 24.8 1.6E+02 0.0035 34.2 6.5 55 417-493 343-401 (415)
330 PLN02710 farnesyltranstransfer 24.6 7.1E+02 0.015 29.3 11.7 21 369-390 192-212 (439)
331 TIGR02997 Sig70-cyanoRpoD RNA 24.6 1.6E+02 0.0036 32.2 6.4 52 418-491 243-298 (298)
332 PRK13272 treA trehalase; Provi 24.4 1.3E+03 0.029 27.9 14.4 100 508-632 340-443 (542)
333 PRK09636 RNA polymerase sigma 23.5 1.7E+02 0.0037 31.8 6.3 53 464-523 133-185 (293)
334 cd03035 ArsC_Yffb Arsenate Red 23.3 1E+02 0.0023 28.5 3.9 38 143-190 2-41 (105)
335 KOG3760 Heparan sulfate-glucur 23.2 86 0.0019 35.8 3.8 80 545-627 377-462 (594)
336 PRK05658 RNA polymerase sigma 22.8 1.1E+02 0.0024 37.3 5.1 40 464-503 578-618 (619)
337 PRK09635 sigI RNA polymerase s 22.7 1.7E+02 0.0036 32.2 5.9 53 464-523 136-188 (290)
338 cd03016 PRX_1cys Peroxiredoxin 22.5 70 0.0015 33.0 2.9 19 139-157 26-45 (203)
339 PRK08241 RNA polymerase factor 22.1 2.1E+02 0.0045 31.7 6.7 55 464-522 171-227 (339)
340 COG3408 GDB1 Glycogen debranch 22.0 7.3E+02 0.016 30.6 11.7 139 548-693 303-462 (641)
341 PRK13191 putative peroxiredoxi 21.9 74 0.0016 33.4 2.9 21 137-157 32-53 (215)
342 PRK09210 RNA polymerase sigma 21.5 2.4E+02 0.0051 32.1 7.0 55 417-493 298-356 (367)
343 PRK05778 2-oxoglutarate ferred 21.5 2E+02 0.0044 31.9 6.3 102 125-230 180-284 (301)
344 PRK12559 transcriptional regul 21.3 1.5E+02 0.0033 28.6 4.7 46 142-197 2-48 (131)
345 cd02897 A2M_2 Proteins similar 20.8 7.1E+02 0.015 26.9 10.4 34 345-382 141-174 (292)
346 PRK13344 spxA transcriptional 20.7 1.7E+02 0.0037 28.3 5.0 50 143-204 3-53 (132)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-164 Score=1391.70 Aligned_cols=626 Identities=44% Similarity=0.735 Sum_probs=584.2
Q ss_pred ccccccccCCChhhhcccCCCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEE
Q 003553 100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (811)
Q Consensus 100 ~~~NrL~~e~SpYL~qH~~~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkv 179 (811)
.++|||++|+|||||||++|||+|+||++|||++||++||||||||||+||||||||++|||+||+||++||++||+|||
T Consensus 5 ~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV 84 (667)
T COG1331 5 SMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV 84 (667)
T ss_pred CcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHhccCcCe-----------------------------------eehhhhhhchHHHHHHHHHH
Q 003553 180 DREERPDVDKVYMTYVQALYGGGGW-----------------------------------KVKDAWDKKRDMLAQSGAFA 224 (811)
Q Consensus 180 D~ee~pdi~~~y~~~~q~~~g~gGW-----------------------------------~i~~~w~~~r~~~~~~a~~i 224 (811)
|||||||||++||++||+|||+||| +|.+.|+++|++++++|+.+
T Consensus 85 DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~ 164 (667)
T COG1331 85 DREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERV 164 (667)
T ss_pred ChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHH
Q 003553 225 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK 304 (811)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~ 304 (811)
.+.++....+ ..+..++++.+++++++|.+.||++|||||++||||+|+.+.|||+++.+++ ++++++
T Consensus 165 ~~~l~~~~~~-----~~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~ 232 (667)
T COG1331 165 LEALEGLARP-----SAGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALD 232 (667)
T ss_pred HHHHHhccCC-----CccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHH
Confidence 9999875422 1223567788999999999999999999999999999999999999987754 479999
Q ss_pred HHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003553 305 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 384 (811)
Q Consensus 305 ~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p 384 (811)
|+++||++|+.||||||+||||||||||+.|.||||||||||||+|+.+|++||++|||++|+++|++|++||+|+|++|
T Consensus 233 ~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp 312 (667)
T COG1331 233 MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSP 312 (667)
T ss_pred HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCC
Q 003553 385 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 464 (811)
Q Consensus 385 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~ 464 (811)
+||||+|+|||++ ++||+||+||.+||+++||+++++|+++|+|+++|| |+|+||||+..+
T Consensus 313 ~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~ 373 (667)
T COG1331 313 EGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGP 373 (667)
T ss_pred CCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCc
Confidence 9999999999995 699999999999999999999999999999999999 579999999988
Q ss_pred chHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003553 465 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 544 (811)
Q Consensus 465 ~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~ 544 (811)
.++ + ++++.++++.+|+||+.+|++|++|++||||+|+||||||.||+.|++++++ +
T Consensus 374 ~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~ 430 (667)
T COG1331 374 LEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------P 430 (667)
T ss_pred hhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------h
Confidence 765 2 7888999999999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003553 545 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 624 (811)
Q Consensus 545 ~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 624 (811)
+|++.|+++++||.+.+++ ++|.|.+++|.....++++|||++|.|+|+||++|+|.+||+.|++|++.+++.|||+
T Consensus 431 ~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~ 507 (667)
T COG1331 431 EYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDD 507 (667)
T ss_pred HHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 3899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003553 625 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC 704 (811)
Q Consensus 625 ~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~l~ 704 (811)
+ ||||+++.+++.+++|+++..|+++||+||+++.+|++|+.+||+ ..|.+.|+++|+.|.+.+.++|.++++++.
T Consensus 508 ~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~ 583 (667)
T COG1331 508 E-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLLL 583 (667)
T ss_pred C-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 8 779999999999999999999999999999999999999999996 889999999999999999999999999999
Q ss_pred HHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEc
Q 003553 705 AADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVC 784 (811)
Q Consensus 705 a~~~~~~~~~~~vvivg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~tayVC 784 (811)
+++.+..+ +.+|||+| ....++++++.+.|+|++++++...+.. .++.+...++|+ ++|||
T Consensus 584 a~~~~~~~-~~~ivvv~----~~~~~~~~~~~~~~~P~~~l~~~~~~~~-------------~~~~~~~l~~g~-~ayvC 644 (667)
T COG1331 584 AAEFLISG-PLVIVVAG----DPRSELLRAALRLYLPEKVLVVGTEGYV-------------SLLVDGMLGGGK-TAYVC 644 (667)
T ss_pred HHHHHcCC-ceEEEEeC----CCcHHHHHHHHhcCCcceEEEEeccccc-------------CcchhhccCCCC-eEEEe
Confidence 99998866 58888888 2346799999999999999987644311 111111112445 99999
Q ss_pred cCCccCCCCCCHHHHHHHhhc
Q 003553 785 QNFSCSPPVTDPISLENLLLE 805 (811)
Q Consensus 785 ~~~~C~~Pvt~~~~L~~~L~~ 805 (811)
+|++|++||+++++|.++|..
T Consensus 645 ~~~~C~~P~~~~e~l~~~l~~ 665 (667)
T COG1331 645 TGDACLPPVTSPEELAELLAV 665 (667)
T ss_pred cCCccCCCcCCHHHHHHHHhh
Confidence 999999999999999999975
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=5.7e-163 Score=1321.64 Aligned_cols=676 Identities=60% Similarity=0.988 Sum_probs=618.8
Q ss_pred hhhcccC---CCCCCCCCCcccccccccCCChhhhcccCCCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhh
Q 003553 83 VVAMAER---TPASTSHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVE 159 (811)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~~~~NrL~~e~SpYL~qH~~~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e 159 (811)
++.|+.+ ++.++...+-+..|||+.++||||+||+.|||+|+||++|||++|++|||||||++||++||||||||+|
T Consensus 54 ~~pm~~gg~~sh~sS~~~~v~~~nRli~skspyllqhaynpvdwypwgqeaf~kar~enkpifLsvgystchwchvmeke 133 (786)
T KOG2244|consen 54 TLPMRRGGVRSHNSSFSSPVPPLNRLISSKSPYLLQHAYNPVDWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKE 133 (786)
T ss_pred ccccccCceecCCCCccCCCCccccccccCCcchhhhccCCcccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecc
Confidence 4445544 2333333332346999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhccCcCe-----------------------------------
Q 003553 160 SFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW----------------------------------- 204 (811)
Q Consensus 160 ~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~~~~q~~~g~gGW----------------------------------- 204 (811)
+|+|++++++||++||.||||||||||||++||+++|+..|+|||
T Consensus 134 sfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~ 213 (786)
T KOG2244|consen 134 SFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLK 213 (786)
T ss_pred cccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999
Q ss_pred eehhhhhhchHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHH
Q 003553 205 KVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMML 284 (811)
Q Consensus 205 ~i~~~w~~~r~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll 284 (811)
+|++.|.++|+.+.+.+..+++.|++++++.++ .=+.++++|...++.+.||||.+||||.+..|.||+
T Consensus 214 ~I~~~w~~kr~tllet~~~~is~ls~al~peaa-----------~g~~~~ekl~e~i~~~~qGfg~apKFP~~~~L~FLf 282 (786)
T KOG2244|consen 214 KIKDAWNSKRDTLLETGTYAISELSKALSPEAA-----------TGDNRAEKLSEGISREAQGFGEAPKFPKACDLDFLF 282 (786)
T ss_pred HHHHHHHhhhhHHHhhhHHHHHHHHhhcCcccc-----------ccchhHHHHHHHHHHHhhhhccCCCCCCccccceee
Confidence 899999999999999998888888765542111 012567889999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh
Q 003553 285 YHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV 364 (811)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~ 364 (811)
.+...+ .+++.+.|+.+||+.|+.|||+|||||||||||||+.|+|||||||||||+||+.+|++||++|+|+
T Consensus 283 ~~~lt~-------k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysdafklT~de 355 (786)
T KOG2244|consen 283 TFNLTS-------KADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSDAFKLTKDE 355 (786)
T ss_pred eecccc-------cCcHHHHHHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHHhhhhcchhH
Confidence 875433 2578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhh-------HHHHHHHhcccC
Q 003553 365 FYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-------AILFKEHYYLKP 437 (811)
Q Consensus 365 ~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~-------~~~~~~~y~l~~ 437 (811)
.|..+|+++++||.++|.+|+||||+++||||.|.++++.++|||||+||.+||+++|||. ++++..+|||++
T Consensus 356 ~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~ 435 (786)
T KOG2244|consen 356 MYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLFAEHYGVKK 435 (786)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999965 499999999999
Q ss_pred CCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHH
Q 003553 438 TGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISS 517 (811)
Q Consensus 438 ~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~A 517 (811)
.||+ .+.+||||++.|+|||.++.+.++.|..++++++++++.|.+++++|..+|.+||+|++|+|||++||||||++
T Consensus 436 sGnv--s~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~sWnGLviSg 513 (786)
T KOG2244|consen 436 SGNV--SSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIVSWNGLVISG 513 (786)
T ss_pred CCCC--CCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchheeeccchhhHH
Confidence 9996 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCCC----------CCCCCcch
Q 003553 518 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGPS----------KAPGFLDD 586 (811)
Q Consensus 518 La~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~-~~~~g~~----------~~~~~leD 586 (811)
|++|+.+++.. ++|++.|..+++|+.++|+|...+.|.+ +.++|.. ..++|+||
T Consensus 514 l~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldD 578 (786)
T KOG2244|consen 514 LAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDD 578 (786)
T ss_pred HHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhh
Confidence 99999999872 6999999999999999999988788877 5555422 33579999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 666 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~ 666 (811)
|||+|.|||+||+++|+.+||.+|++|++.+..+||| +||||.+..+++++++|.|+..|||+||+||+.|+||+||+
T Consensus 579 YAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~ 656 (786)
T KOG2244|consen 579 YAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLA 656 (786)
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHH
Confidence 9999999999999999999999999999999999999 89999998889999999999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEE
Q 003553 667 SIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVI 746 (811)
Q Consensus 667 ~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~l~a~~~~~~~~~~~vvivg~~~~~~~~~ll~~~~~~~~P~~~v~ 746 (811)
.+++. +.|++.|.++|..|+.++...|.+.|.|++|+.+ ..++.++|||||+++++++.+++..+++.|+|+++|+
T Consensus 657 ~~~~~---e~yl~ka~~ll~~fseRl~~vpvAlPeM~~Al~~-~q~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vi 732 (786)
T KOG2244|consen 657 SIVAA---ESYLNKAHRLLAVFSERLREVPVALPEMCCALMI-SQPGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVI 732 (786)
T ss_pred HHhhH---HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHh-hccCcceEEEECCCCChHHHHHHHHHHHhcCCcceEE
Confidence 99985 7899999999999999999999999999998865 4566899999999999999999999999999999999
Q ss_pred EeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEccCCccCCCCCCHHHHHHHhh
Q 003553 747 HIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLL 804 (811)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~tayVC~~~~C~~Pvt~~~~L~~~L~ 804 (811)
+++|++.. +++....++...|.+ .++++++|||++++|++||+|+.+|+++|.
T Consensus 733 hidpsd~e--e~s~~~ls~ka~m~~---~g~k~tayvC~~~aC~~PVtdpqeLe~l~s 785 (786)
T KOG2244|consen 733 HIDPSDEE--EFSEEHLSNKAEMAK---NGEKVTAYVCQHFACSPPVTDPQELERLLS 785 (786)
T ss_pred EeCCCCHH--HHHhccCchHHHHHh---cCCCceEEEecCcccCCCCCCHHHHHHHhc
Confidence 99987653 466666677666653 468999999999999999999999999875
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=3.2e-46 Score=366.02 Aligned_cols=128 Identities=59% Similarity=1.086 Sum_probs=106.4
Q ss_pred ccccccCCChhhhcccCCCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcC
Q 003553 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (811)
Q Consensus 102 ~NrL~~e~SpYL~qH~~~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ 181 (811)
+|||+.|+|||||||++|||+|++|+++|+++||++||||||+||++||||||||++|||+||+|+++||++||+||||+
T Consensus 1 ~N~l~~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr 80 (163)
T PF03190_consen 1 TNRLANSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR 80 (163)
T ss_dssp --GGGG---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET
T ss_pred CCccccCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhccCcCe-----------------------------------eehhhhhhchHHHHHHHHHHHH
Q 003553 182 EERPDVDKVYMTYVQALYGGGGW-----------------------------------KVKDAWDKKRDMLAQSGAFAIE 226 (811)
Q Consensus 182 ee~pdi~~~y~~~~q~~~g~gGW-----------------------------------~i~~~w~~~r~~~~~~a~~i~~ 226 (811)
||+||||++||+++|+|+|+||| +|+++|+++|++|++.|++|.+
T Consensus 81 ee~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~ 160 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILE 160 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-S
T ss_pred ccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999 8999999999999999999988
Q ss_pred HHH
Q 003553 227 QLS 229 (811)
Q Consensus 227 ~l~ 229 (811)
+|+
T Consensus 161 ~l~ 163 (163)
T PF03190_consen 161 ALQ 163 (163)
T ss_dssp HH-
T ss_pred hhC
Confidence 764
No 4
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.92 E-value=3.3e-23 Score=231.03 Aligned_cols=299 Identities=16% Similarity=0.143 Sum_probs=226.0
Q ss_pred CcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCc
Q 003553 318 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADS 396 (811)
Q Consensus 318 i~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~-Ggfysa~DADs 396 (811)
.+|+..|||+- ++|.++.+.--.|-+|.||++|++|+.+|++++++.|++.|+++++||.+++++++ ||||.+.|.|+
T Consensus 27 ~~d~~~gg~~~-~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g 105 (384)
T cd00249 27 GLDREAGGFFE-CLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG 105 (384)
T ss_pred CCCCCCCCeEE-EECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC
Confidence 57888899985 88889987666999999999999999999999999999999999999999999988 99999999888
Q ss_pred ccccCcccccCCceeeecHHHHHHHhhhh--HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCC
Q 003553 397 AETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGM 474 (811)
Q Consensus 397 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~--~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~ 474 (811)
.+.+..+..++.+|.++...++.+++++. .+.+.+.+
T Consensus 106 ~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~----------------------------------------- 144 (384)
T cd00249 106 RPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETI----------------------------------------- 144 (384)
T ss_pred CCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------------------
Confidence 77666666778888888888888887632 12221111
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCC--CCCCcchhhccHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHH
Q 003553 475 PLEKYLNILGECRRKLFDVRSKRPR--PHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVA 550 (811)
Q Consensus 475 ~~~~l~~~l~~~r~~L~~~R~~R~~--P~~DdKiltsWNal~--I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A 550 (811)
+.+.++++ ....... ...|+..+-+.|..| +.+|.++++++++ ++|++.|
T Consensus 145 ---------~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd----------------~~~~~~A 198 (384)
T cd00249 145 ---------DLLERRFW-EDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGE----------------QKYLDRA 198 (384)
T ss_pred ---------HHHHHHhc-cCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCC----------------HHHHHHH
Confidence 11111111 0000000 000111222245555 8899999999997 7899999
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCC------CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003553 551 ESAASFIRRHLYDEQTHRLQHSFRNGPS------KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 624 (811)
Q Consensus 551 ~~~~~~l~~~l~d~~~G~l~~~~~~g~~------~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 624 (811)
+++.+.+.++++++.+|+++..+.++.. .....+.-.+..+.++++++++|+++.|++.|+++++.+.++++|+
T Consensus 199 ~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~ 278 (384)
T cd00249 199 DEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDP 278 (384)
T ss_pred HHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 9999999999998878888866644311 1111122245578899999999999999999999999999999999
Q ss_pred CCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003553 625 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 692 (811)
Q Consensus 625 ~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 692 (811)
++|++|.+..++... ...|+..+++++.++.+++.|+.++++ +.|.+.++++++......
T Consensus 279 ~~G~~~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 279 ERGGLYYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred cCCCEEEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhc
Confidence 989888833222221 245789999999999999999999985 789999998888765444
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.87 E-value=5.7e-20 Score=205.05 Aligned_cols=332 Identities=15% Similarity=0.051 Sum_probs=223.0
Q ss_pred HHHHHHHHHh-hccccCCCCCC------CC----CCCCh--hHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhC
Q 003553 250 LRLCAEQLSK-SYDSRFGGFGS------AP----KFPRP--VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKG 316 (811)
Q Consensus 250 ~~~~~~~l~~-~~D~~~GGfg~------aP----KFP~p--~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~G 316 (811)
++.++..+.. .+|+++|||.. .| |.-.. =.+..+...+... ++++.+++|.++++-|..
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~-------~~~~~l~~A~~~~~fl~~- 87 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG-------WRPEWLEAAEHGLEYLDR- 87 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHH-
Confidence 4566666766 68999999954 12 32111 1222222233322 246889999999998887
Q ss_pred CCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCc
Q 003553 317 GIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 396 (811)
Q Consensus 317 Gi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs 396 (811)
-.+|...|||++ ++|++|.+.+..|.|||+|.++.+|+.+|++++++.|++.|+++++++.+.++++.||+|...+.|.
T Consensus 88 ~~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~ 166 (384)
T cd00249 88 HGRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT 166 (384)
T ss_pred hCcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 456665699986 8888999888899999999999999999999999999999999999999999855677775544432
Q ss_pred ccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCH
Q 003553 397 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 476 (811)
Q Consensus 397 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~ 476 (811)
.+ .++. -... .....+.+.+.++.+. . ..
T Consensus 167 ~~-------~~~~---~~~~-------h~~~all~l~~~tgd~---------------------------~-------~~ 195 (384)
T cd00249 167 PP-------YRGS---NPHM-------HLLEAMLAAYEATGEQ---------------------------K-------YL 195 (384)
T ss_pred CC-------CCCC---ChhH-------HHHHHHHHHHHHhCCH---------------------------H-------HH
Confidence 11 1110 0000 0011111122221100 0 01
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCC-----------CCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 003553 477 EKYLNILGECRRKLFDVRSKRPRPH-----------LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 545 (811)
Q Consensus 477 ~~l~~~l~~~r~~L~~~R~~R~~P~-----------~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~ 545 (811)
+..++.++.+.+++......+..-+ ..+-+.-+-|.-++++|.++++++++ ++
T Consensus 196 ~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~----------------~~ 259 (384)
T cd00249 196 DRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQ----------------AW 259 (384)
T ss_pred HHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCC----------------HH
Confidence 2233344444445443322221111 11122233467788999999999987 78
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEe-c-CCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003553 546 YMEVAESAASFIRRHLYDEQTHRLQHSF-R-NGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 622 (811)
Q Consensus 546 yle~A~~~~~~l~~~l~d~~~G~l~~~~-~-~g~~-~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 622 (811)
|++.|+++.+++.++++|+++|+++.+. . +|.+ ...+.++.++.++.+++.+|++|||++|++++.++++.+.++|+
T Consensus 260 ~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 260 LIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred HHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999888888843 2 2322 34578888999999999999999999999999999999999999
Q ss_pred ccCCCcccccCCCCCcccccccCCCCCCCCChHHHHH
Q 003553 623 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 659 (811)
Q Consensus 623 D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a 659 (811)
|++.|+||+.-..++.+....| .....+.++..++
T Consensus 340 d~~~G~w~~~~~~~g~~~~~~~--~~~~~~yH~~~a~ 374 (384)
T cd00249 340 DPEYGLWFGYLDADGKVLLTPK--GPAKTFYHVVRAL 374 (384)
T ss_pred CCCCCcceeeECCCCCCcCCCC--CCCCCCccHHhHH
Confidence 9999999987655544443333 2344455555444
No 6
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.85 E-value=2.6e-21 Score=183.94 Aligned_cols=81 Identities=74% Similarity=1.321 Sum_probs=79.1
Q ss_pred ccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhccCcC
Q 003553 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (811)
Q Consensus 124 ~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~~~~q~~~g~gG 203 (811)
++|+++++++|+++||||||+|+++||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|+...+.+.|.+|
T Consensus 1 ~~~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 1 YPWGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CCCCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred e
Q 003553 204 W 204 (811)
Q Consensus 204 W 204 (811)
|
T Consensus 81 ~ 81 (124)
T cd02955 81 W 81 (124)
T ss_pred C
Confidence 9
No 7
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.75 E-value=1.9e-18 Score=191.06 Aligned_cols=294 Identities=19% Similarity=0.175 Sum_probs=191.4
Q ss_pred cEEEEEcCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCcccccCc
Q 003553 325 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 402 (811)
Q Consensus 325 GF~RYsvD~~W~v-PHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~-Ggfysa~DADs~~~~~~ 402 (811)
|||.+ .|.++.+ +-..|.+..||+++++|+.||+ ++++.|+++|+++++||.+.+++++ ||||+++|.+. +.+..
T Consensus 1 Gf~~~-ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~~~ 77 (346)
T PF07221_consen 1 GFFEC-LDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLDPQ 77 (346)
T ss_dssp SBE-E-BBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--
T ss_pred Cceee-eCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCccc
Confidence 67764 8888875 5556799999999999999999 8899999999999999999999887 99999999877 77888
Q ss_pred ccccCCceeeecHHHHHHHhhh--hHHHHHHHhccc--------CCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHc
Q 003553 403 TRKKEGAFYVWTSKEVEDILGE--HAILFKEHYYLK--------PTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKL 472 (811)
Q Consensus 403 ~~~~EGayY~wt~~Ei~~~L~~--~~~~~~~~y~l~--------~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~ 472 (811)
+..+.-+|.++...+ ..+.++ ..+++.+.+.+. .+|..+.. ..|....-..+.++|+.+. +...+
T Consensus 78 ~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~-~~~~~~~r~~n~~mhl~eA---~l~l~ 152 (346)
T PF07221_consen 78 KDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESF-DPDWSPPRGQNPHMHLLEA---FLALY 152 (346)
T ss_dssp EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EE-TTTSSCBEEHHHHHHHHHH---HHHHH
T ss_pred cchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceecc-CCccccCCCCChhHHHHHH---HHHHH
Confidence 888999999999999 566662 234444444332 22222110 0010000001222344332 22233
Q ss_pred CCCH-HHHHHHHHHHHHH----HHhhhcCCCCCCCCc--chhh---------------ccHHHHHHHHHHHHHHhhhhhh
Q 003553 473 GMPL-EKYLNILGECRRK----LFDVRSKRPRPHLDD--KVIV---------------SWNGLVISSFARASKILKSEAE 530 (811)
Q Consensus 473 g~~~-~~l~~~l~~~r~~----L~~~R~~R~~P~~Dd--Kilt---------------sWNal~I~ALa~A~~~~~d~~~ 530 (811)
.++. +...++++++.+. +......+.+-++|+ +.+. +-+.=.+|.|.++.+..+..
T Consensus 153 ~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-- 230 (346)
T PF07221_consen 153 EATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-- 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccc--
Confidence 3322 3344444443333 333223333333433 2111 11222367787877444331
Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003553 531 SAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLV 608 (811)
Q Consensus 531 ~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~-~~~~~leDyA~~i~aLL~LYeaTgd~~yL~ 608 (811)
.+++++.|.+++++..++-||+++|+++.+ ..+|.+ ...+.++.++.++.|++.+|++||++.|++
T Consensus 231 ------------~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~ 298 (346)
T PF07221_consen 231 ------------DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLD 298 (346)
T ss_dssp -------------HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHH
Confidence 278999999999999999999988877766 356655 456889999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCcccccCCCCCccc
Q 003553 609 WAIELQNTQDELFLDREGGGYFNTTGEDPSVL 640 (811)
Q Consensus 609 ~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li 640 (811)
.+.++.+.+.++|.|++.|+||..-..+..+.
T Consensus 299 ~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~ 330 (346)
T PF07221_consen 299 WARRVWDYIFRHFIDPEYGEWFDYLDRDGSPL 330 (346)
T ss_dssp HHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BS
T ss_pred HHHHHHHHHHHhCCCCCCCeeEeeECCCCCCC
Confidence 99999999999999999999998766555533
No 8
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.5e-14 Score=156.64 Aligned_cols=304 Identities=16% Similarity=0.093 Sum_probs=231.0
Q ss_pred HHhCCCcccCCCcEEEEEcCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 003553 313 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 391 (811)
Q Consensus 313 Ma~GGi~D~vgGGF~RYsvD~~W~vPH-FEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa 391 (811)
|-..--.|..+||||. ..|.+-.+-- -.|-+..+++++++|+.|+....++.++++|.+.+.|+.+.-++++||+|..
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 4555567888999998 4444444332 5677888999999999999999888899999999999999999999999999
Q ss_pred ccCCcccccCcccccCCceeeecHHHHHHHhhhhH-HHHHHHhccc-----CCCCc-CCC-CCCCCCCCCCCcceeeccC
Q 003553 392 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA-ILFKEHYYLK-----PTGNC-DLS-RMSDPHNEFKGKNVLIELN 463 (811)
Q Consensus 392 ~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~-~~~~~~y~l~-----~~Gn~-e~~-~~~dp~~~f~g~nvL~~~~ 463 (811)
+|.|..+.+..++.+-.+|-+...+.+..+.++++ ++..+.+.+. .+.+. -.+ -..++..+...+.+.|+.+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 99999999999999999999999999888887542 2222223221 11110 000 1223333345677888766
Q ss_pred CchHHHHHcCCCH-----HHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHH---------------HHHHHHHHH
Q 003553 464 DSSASASKLGMPL-----EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV---------------ISSFARASK 523 (811)
Q Consensus 464 ~~~~~a~~~g~~~-----~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~---------------I~ALa~A~~ 523 (811)
. +...+..+. +...+..+.++.+....++-+.+-++|.. ||.-- .+.|.+.++
T Consensus 182 A---~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~ 254 (388)
T COG2942 182 A---MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIAR 254 (388)
T ss_pred H---HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHH
Confidence 4 333333322 33334455577888888888888888887 75432 446777777
Q ss_pred HhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcchHHHHHHHHHHHHHHc
Q 003553 524 ILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFG 601 (811)
Q Consensus 524 ~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~-~~~~~leDyA~~i~aLL~LYeaT 601 (811)
..++ ...+..|+++++-.+++-||++.|+++.++ .||.+ +..+.+.+++..+.+++.|++.|
T Consensus 255 ~~~~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~ 318 (388)
T COG2942 255 RRGR----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETT 318 (388)
T ss_pred Hhch----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcC
Confidence 7665 678999999999999999999999988874 56665 44588899999999999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccc
Q 003553 602 S-GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 640 (811)
Q Consensus 602 g-d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li 640 (811)
| ++.|.+...++++.+..+|.|++.|.||+.-..+..++
T Consensus 319 ~~~~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~ 358 (388)
T COG2942 319 GARERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVL 358 (388)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCcee
Confidence 9 99999999999999999999999999998765554433
No 9
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.61 E-value=9.4e-16 Score=135.11 Aligned_cols=66 Identities=36% Similarity=0.566 Sum_probs=61.7
Q ss_pred ccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccH
Q 003553 122 DWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187 (811)
Q Consensus 122 ~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi 187 (811)
+|++..++|+++|+++||||||.|+++||+||+.|++++|++++|.++++++||+|+||.+++...
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~ 66 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN 66 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence 599999999999999999999999999999999999999999999999999999999999765543
No 10
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.55 E-value=5e-15 Score=141.49 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=60.6
Q ss_pred CCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCC
Q 003553 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (811)
Q Consensus 119 ~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~e 182 (811)
+.|+|....++|++.||++||||||.|+++||+||++|++++|+|++|++++|++||.|++|.|
T Consensus 4 ~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d 67 (130)
T cd02960 4 DDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE 67 (130)
T ss_pred ccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence 3599997779999999999999999999999999999999999999999999999999999875
No 11
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.52 E-value=1.6e-12 Score=145.75 Aligned_cols=285 Identities=20% Similarity=0.258 Sum_probs=179.0
Q ss_pred HHHHHHHHhhcccc-CCCCCC---CC--CCCChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 003553 251 RLCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 324 (811)
Q Consensus 251 ~~~~~~l~~~~D~~-~GGfg~---aP--KFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgG 324 (811)
..++..+...|+.. .|++.+ .| ..|.+..+..|..++.+++ ++...+++..++..+.... +|.
T Consensus 7 ~~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~--- 75 (370)
T PF03663_consen 7 KSAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS--- 75 (370)
T ss_dssp -HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS---
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc---
Confidence 34455666777877 454422 22 4566778888888887754 3788999999999887644 110
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeeeccCCc
Q 003553 325 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDADS 396 (811)
Q Consensus 325 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~-----~y~~~A~~t~~fl~~~m~~p~---Ggfysa~DADs 396 (811)
|.. ..|. ...-.-|||.+..++.+||++|+++ .|++.|+++++++.+ -+++. ||++|..+.-.
T Consensus 76 -~~~----~~~~---~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~ 146 (370)
T PF03663_consen 76 -YNP----SNGS---GDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTN 146 (370)
T ss_dssp -S------S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----
T ss_pred -ccc----cccc---ccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccC
Confidence 111 0000 1122335999999999999999999 999999999999995 44543 88988532100
Q ss_pred ccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCH
Q 003553 397 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 476 (811)
Q Consensus 397 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~ 476 (811)
.+ ...||
T Consensus 147 -----------------------------------------~~-------------~~~Kn------------------- 153 (370)
T PF03663_consen 147 -----------------------------------------SG-------------YDYKN------------------- 153 (370)
T ss_dssp -----------------------------------------TE-------------EEEEE-------------------
T ss_pred -----------------------------------------CC-------------CCccc-------------------
Confidence 00 00111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 003553 477 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 556 (811)
Q Consensus 477 ~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~ 556 (811)
+--|++++.+.+++|+++++ +.|++.|+++.+|
T Consensus 154 -------------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W 186 (370)
T PF03663_consen 154 -------------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDW 186 (370)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred -------------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHH
Confidence 22579999999999999987 7899999999999
Q ss_pred HHH-hccccCCCeEEEEec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHccccCCCccc
Q 003553 557 IRR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYF 630 (811)
Q Consensus 557 l~~-~l~d~~~G~l~~~~~-~g---~~~~~~~leDyA~~i~aLL~LYeaTgd~-~yL~~A~~L~~~~~~~F~D~~~Ggyf 630 (811)
+.+ +|+|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|.+|++.+.++|+++.+|-++
T Consensus 187 ~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~ 266 (370)
T PF03663_consen 187 MRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILT 266 (370)
T ss_dssp HHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE-
T ss_pred hhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeee
Confidence 999 999988787776642 22 2344578899999999999999999887 99999999999999998876544455
Q ss_pred ccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003553 631 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 683 (811)
Q Consensus 631 ~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~ 683 (811)
+..-+. ....++-.+.-.+++++.|..|+.+.+. ..+.|.+..+.
T Consensus 267 e~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~-~~~~~~~~l~~ 311 (370)
T PF03663_consen 267 EEACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPD-TADTYRDFLRK 311 (370)
T ss_dssp ----------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHH
T ss_pred cccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHH
Confidence 431110 1113445678889999999999999852 12344444433
No 12
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.8e-12 Score=146.81 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=128.2
Q ss_pred hhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHH
Q 003553 342 KMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVED 420 (811)
Q Consensus 342 KMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~ 420 (811)
|+|.| |++||.+++.|+++++++.|.++|+++.+|+.++|+.. .+.+..
T Consensus 407 kvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~---------------------------- 456 (667)
T COG1331 407 KVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY---------------------------- 456 (667)
T ss_pred ceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee----------------------------
Confidence 77888 99999999999999999999999999999999999863 443310
Q ss_pred HhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCC
Q 003553 421 ILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRP 500 (811)
Q Consensus 421 ~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P 500 (811)
+.|.. -..+
T Consensus 457 --------------------------------~~G~a---------------------------------------~~~g 465 (667)
T COG1331 457 --------------------------------RGGEA---------------------------------------AVAG 465 (667)
T ss_pred --------------------------------ecCcc---------------------------------------cccc
Confidence 01111 0234
Q ss_pred CCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC---
Q 003553 501 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--- 577 (811)
Q Consensus 501 ~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~--- 577 (811)
.++|+ +++|+||+.+|++++| .+||+.|+++++-+.++|||++ ||||.+..+++
T Consensus 466 ~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ 522 (667)
T COG1331 466 LLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLL 522 (667)
T ss_pred cchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccc
Confidence 56788 9999999999999988 7899999999999999999987 66887644432
Q ss_pred -----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003553 578 -----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 621 (811)
Q Consensus 578 -----~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 621 (811)
....++.+.||.++.+|+.|..+|||.+|++.|.++++.+..+.
T Consensus 523 ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 523 IRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 23357788999999999999999999999999999997765443
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.41 E-value=5.3e-13 Score=147.79 Aligned_cols=163 Identities=26% Similarity=0.314 Sum_probs=132.4
Q ss_pred CCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC
Q 003553 499 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 578 (811)
Q Consensus 499 ~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~ 578 (811)
.|..+++.-+-.++.+|+.++.|++ +|+ ++|++.|++.++||.++++|+++|+++++.++|.+
T Consensus 11 ~~~~~~~k~~~~q~R~~~~fa~a~~-~g~----------------~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~ 73 (346)
T PF07221_consen 11 KPDDSDKKRLWVQARQLYTFARAYR-LGR----------------PEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP 73 (346)
T ss_dssp -BECGGEEEHHHHHHHHHHHHHHHH-TTS----------------HHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE
T ss_pred CCCCCCCceeeeeHHHHHHHHHHHh-cCc----------------hhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC
Confidence 3555566677789999999999999 886 78999999999999999999988999888766553
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHH-
Q 003553 579 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS- 656 (811)
Q Consensus 579 -~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Ns- 656 (811)
....-+.|+||++.|+.. +.+||++++++.|+++++.+.++|+|++.|+|+.....+...+ ++.|+
T Consensus 74 ~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~-----------r~~n~~ 141 (346)
T PF07221_consen 74 LDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP-----------RGQNPH 141 (346)
T ss_dssp EE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB-----------EEHHHH
T ss_pred CccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC-----------CCCChh
Confidence 334667899999999999 8999999999999999999999999998888887654322211 35666
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003553 657 -VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 693 (811)
Q Consensus 657 -v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 693 (811)
.++.+++.|+.++++ +.|+++|+++++.+...+.
T Consensus 142 mhl~eA~l~l~~~~~~---~~~~~~a~~l~~~~~~~f~ 176 (346)
T PF07221_consen 142 MHLLEAFLALYEATGD---PRYLDRAEELLDLFLDRFA 176 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHH
Confidence 678899999999985 7899999999999885554
No 14
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.28 E-value=4.8e-12 Score=119.39 Aligned_cols=65 Identities=23% Similarity=0.544 Sum_probs=58.0
Q ss_pred CCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCc
Q 003553 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP 185 (811)
Q Consensus 119 ~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~p 185 (811)
+.|+|++| ++|+++|++++|||||+|+++||+||+.|+...++.+++.+ ++.+||.|.||.++.|
T Consensus 1 ~~i~w~~~-~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~ 65 (117)
T cd02959 1 DHIHWVTL-EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP 65 (117)
T ss_pred CcccceeH-HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc
Confidence 46999987 99999999999999999999999999999999888888766 6889999999976544
No 15
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.21 E-value=2.6e-11 Score=113.35 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=56.9
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi 187 (811)
.++|++.||+++|||||.|+++||.+|+.|++++|+|++|+++||++||.+++|.++ |+.
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~ 65 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG 65 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH
Confidence 489999999999999999999999999999999999999999999999999999976 554
No 16
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.16 E-value=1.1e-09 Score=123.02 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=106.6
Q ss_pred CCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecCCC-
Q 003553 501 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNGP- 577 (811)
Q Consensus 501 ~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~--G~l~~~~~~g~- 577 (811)
+.||. +.++.|+++||+++++.+ ...++||+.|+++.+++. ..||++. ||+++.-.+..
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 55777 889999999999999821 001399999999999999 7778763 88887621100
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HccccCCCcccccCCCCCcccccccCCCCCCCCChHH
Q 003553 578 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 656 (811)
Q Consensus 578 ~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~-~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Ns 656 (811)
...-+-.--.+.++...++||++|+|+.||++|+++++.+.+ .++|++.|.+++....+..- .+.......--.+
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG 223 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQG 223 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHH
Confidence 000111123577888999999999999999999999999999 99999888888754211100 0011112223456
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003553 657 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 691 (811)
Q Consensus 657 v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 691 (811)
+++..+..|+++|+++ ..|+++|+++++.....
T Consensus 224 ~~l~a~~~Ly~~T~~~--~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 224 VFLGAAAYLYNATNDE--QTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Confidence 8999999999999651 38999999999887554
No 17
>smart00594 UAS UAS domain.
Probab=99.04 E-value=3.4e-10 Score=107.46 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=61.0
Q ss_pred CCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCC
Q 003553 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (811)
Q Consensus 120 ~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~ 184 (811)
|.=+....++|++.|++++|++||.|+++||.+|++|++++|.|++|.++||++||.+++|.+..
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~ 73 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS 73 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh
Confidence 56677778999999999999999999999999999999999999999999999999999998753
No 18
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.99 E-value=3.3e-09 Score=118.79 Aligned_cols=194 Identities=15% Similarity=0.156 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCc-hhHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHHH
Q 003553 301 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFE-KMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDYL 377 (811)
Q Consensus 301 ~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFE-KMLyD-NA~Ll~~ya~Ay~~t~d-~~y~~~A~~t~~fl 377 (811)
+.++.+..+.+.+.. ++++ =.-||.. ||+.. |+++|.-|++|+++++. |.|.+.|...++|+
T Consensus 474 ~~kkll~e~~e~L~~--aR~k-------------RPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~fl 538 (786)
T KOG2244|consen 474 KYKKLLGECREKLFD--ARLK-------------RPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANFL 538 (786)
T ss_pred HHHHHHHHHHHHHHH--Hhhc-------------CCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhhh
Confidence 445556666666544 3332 2569987 99998 99999999999999875 59999999999999
Q ss_pred HHhccCCC-CceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCc
Q 003553 378 RRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGK 456 (811)
Q Consensus 378 ~~~m~~p~-Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~ 456 (811)
.++|.++. +-|....-.+. ..|.++ ..
T Consensus 539 ~k~m~d~~eklliR~scY~g----------------------------------------a~g~ve------------~~ 566 (786)
T KOG2244|consen 539 PKDMIDVAEKLLIRGSCYDG----------------------------------------ASGRVE------------HS 566 (786)
T ss_pred hhhhhchhhhheeecccccC----------------------------------------CCccee------------cc
Confidence 99998865 33322100000 111111 00
Q ss_pred ceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccC
Q 003553 457 NVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNF 536 (811)
Q Consensus 457 nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~ 536 (811)
.|.-+...|+||+ +++|.+|++.|++.++
T Consensus 567 ------------------------------------n~~~~~~~FldDY------AFlI~gLLDlYea~~~--------- 595 (786)
T KOG2244|consen 567 ------------------------------------NRPSKAPAFLDDY------AFLISGLLDLYEAGGG--------- 595 (786)
T ss_pred ------------------------------------CCccccchhhhhH------HHHHHHHHHHHHccCc---------
Confidence 1122355699999 9999999999999987
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcc--------hHHHHHHHHHHHHHHcCCHHHHH
Q 003553 537 PVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLD--------DYAFLISGLLDLYEFGSGTKWLV 608 (811)
Q Consensus 537 ~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~le--------DyA~~i~aLL~LYeaTgd~~yL~ 608 (811)
.+||++|+++.+--.+.||| +|++|.+-.++.......-| ..+..+..|+.|+.+++.+.|++
T Consensus 596 -------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ 666 (786)
T KOG2244|consen 596 -------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLN 666 (786)
T ss_pred -------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHH
Confidence 68999999999999999998 78888775555443333334 34788999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 003553 609 WAIELQNTQDELF 621 (811)
Q Consensus 609 ~A~~L~~~~~~~F 621 (811)
.|..|+..+.++.
T Consensus 667 ka~~ll~~fseRl 679 (786)
T KOG2244|consen 667 KAHRLLAVFSERL 679 (786)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877655
No 19
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.96 E-value=1.2e-09 Score=103.29 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=55.0
Q ss_pred HHHHHHHhhcC-CcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCcc
Q 003553 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD 186 (811)
Q Consensus 128 ~~a~~~Ak~~~-Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pd 186 (811)
.++++.|++++ |||+|.|+++||++|+.|+.+.++++++.+.++++|+.++||.++.+.
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~ 62 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKE 62 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCce
Confidence 57899999999 999999999999999999999999999999999999999999987643
No 20
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.90 E-value=4.4e-08 Score=106.97 Aligned_cols=160 Identities=15% Similarity=0.111 Sum_probs=124.8
Q ss_pred cchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC
Q 003553 504 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 583 (811)
Q Consensus 504 dKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~ 583 (811)
.-++....| ++.+|+..++. ++ ++|++.|++++++|.+...+.+. .+.+.++.....++
T Consensus 79 ~dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~~---~~~~~~~~~~~~G~ 137 (321)
T cd04791 79 IDLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGDP---ALLWPDFDRVDHGL 137 (321)
T ss_pred CccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhcccc---ccccccCCCCCCcc
Confidence 345666666 45567778877 76 78999999999999988765222 23344555556799
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003553 584 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 663 (811)
Q Consensus 584 leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~ 663 (811)
.+++|-++.+|+.+|++|+|++|++.|.++.+.+.++|.+. .++|+++...+. .....++|++-++.+|+
T Consensus 138 ~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~-~~g~~~~~~~~~---------~~~~wchG~aGi~~~l~ 207 (321)
T cd04791 138 LHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD-DGGLLQVDEGAR---------LLPYLCSGSAGLGLLML 207 (321)
T ss_pred ccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC-CCCceEcCCCCc---------cCcccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999765 455665432211 12368999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003553 664 RLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 697 (811)
Q Consensus 664 rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 697 (811)
+|++++++ ++|++.++++++.+......+|.
T Consensus 208 ~l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 208 RLEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 99999975 78999999999998876655554
No 21
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.88 E-value=2.9e-09 Score=97.43 Aligned_cols=60 Identities=27% Similarity=0.364 Sum_probs=54.5
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi 187 (811)
++.+++|.++||||+|.|+++||++|+.|....++++++++.++++++.++||.+++++.
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 60 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE 60 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH
Confidence 467899999999999999999999999999989999999999998999999999875443
No 22
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.73 E-value=1.9e-08 Score=118.81 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=59.7
Q ss_pred CCCCccccCh-----HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCc
Q 003553 118 HNPVDWFAWG-----EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP 185 (811)
Q Consensus 118 ~~~v~W~~~~-----~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~p 185 (811)
.+.+.|+++. ++++++|+++||||+|+|+++||++|++|++.+|+|++|++.++ +|+.++||.+++.
T Consensus 449 ~~~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~ 520 (571)
T PRK00293 449 QAHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANN 520 (571)
T ss_pred ccCCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCC
Confidence 3456788775 68899999999999999999999999999999999999999997 6999999998654
No 23
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.68 E-value=1.5e-06 Score=96.31 Aligned_cols=152 Identities=20% Similarity=0.299 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCC--CcchHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPG--FLDDYA 588 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~~~~~--~leDyA 588 (811)
.|.+..|+.++..+|| ++|++.|.+-+....++++|+++|.++|.+.. |...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 4568899999999998 79999999999999999999999999998643 3322212 344789
Q ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003553 589 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 663 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~ 663 (811)
+++.|++++|+.+.+ +.+++.+.++++.+. .+.+ +.|.|+....+.. .......|+.++++-.|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~~--------~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDDPD--------PGNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTTT--------TTS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCCC--------CCCcccHHHHHHHHHHHH
Confidence 999999999999855 677788888887754 4545 4566655433211 111234588888998887
Q ss_pred H-HHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003553 664 R-LASIVAGSKSDYYRQNAEHSLAVFETR 691 (811)
Q Consensus 664 r-L~~lt~~~~~~~y~~~A~~~l~~~~~~ 691 (811)
+ +..-.. ..+.|++.|++.++.+...
T Consensus 261 ~gi~~g~~--d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLL--DPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSS--THHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCC--ccHHHHHHHHHHHHHHHhC
Confidence 6 322222 1378999999998888766
No 24
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=2.6e-06 Score=94.35 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHH
Q 003553 510 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYA 588 (811)
Q Consensus 510 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~-l~~~~~~g~~~~~~~leDyA 588 (811)
-.++++-|++.++.+.. ++..++-..+.+.+.+++++++++. -+...+++.. +--.+.+.
T Consensus 117 ~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~--pl~sNp~M 177 (388)
T COG2942 117 GHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA--PLGSNPHM 177 (388)
T ss_pred HHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC--ccCCCcch
Confidence 44788888888776654 4566666777777888888876532 1111222222 22456789
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc---ccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHH
Q 003553 589 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 665 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL 665 (811)
++.+|+|..|++|++..|++.|.+|++.+..+|.|.++|. +|+..+. +. ...+. -+.+|.+...++..|+++
T Consensus 178 Hl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~-p~--~~frg--~~~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 178 HLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWN-PA--HGFRG--RGIEPGHQFEWAWLLLDI 252 (388)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCC-cC--CCccc--CCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999885 5654431 11 11111 257899999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHH
Q 003553 666 ASIVAGSKSDYYRQNAEHSLAV 687 (811)
Q Consensus 666 ~~lt~~~~~~~y~~~A~~~l~~ 687 (811)
+++.++ ......|+.++..
T Consensus 253 a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 253 ARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHhch---hHHHHHHHHHHHH
Confidence 999875 4455666655444
No 25
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.59 E-value=4.4e-08 Score=112.78 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=61.8
Q ss_pred CccccChHH-HHHHHhhcCC--cEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 121 VDWFAWGEE-AFAEARKRDV--PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 121 v~W~~~~~~-a~~~Ak~~~K--pi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.-|+++.++ .++.+.+++| ||||+|+|+||..||+||+.+|+|++|+..+. ++|.+++|++++..-+...+
T Consensus 454 ~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lL 527 (569)
T COG4232 454 EFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALL 527 (569)
T ss_pred hhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHH
Confidence 567999999 9999999999 99999999999999999999999999999886 69999999987544333333
No 26
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.39 E-value=4e-07 Score=86.02 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=49.7
Q ss_pred hHHHHHHHhhcCCcEEEEEccc----CchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCC
Q 003553 127 GEEAFAEARKRDVPIFLSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~----~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~ 184 (811)
.+||++.||++.|+++|.++.+ ||.+| +++|.||+|.++||++||.+..|.+..
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~ 63 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP 63 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh
Confidence 5899999999999999999999 66666 789999999999999999999999863
No 27
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.34 E-value=4.2e-05 Score=83.62 Aligned_cols=133 Identities=18% Similarity=0.070 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 591 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 591 (811)
+=++++|+++|+++++ ++|++.|+++.+++.+++++.+ ++.+++ +++......+....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDD-GGLLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCC-CCceEc-CCCCccCcccCCCcHHHH
Confidence 6678889999999998 7999999999999999987654 444442 333334457788889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003553 592 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 671 (811)
Q Consensus 592 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 671 (811)
.+++.++++|+|++|++.|+++.+.+...++. +- ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~--~~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYA--NP----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcc--Cc----------------------cccCCcHhHHHHHHhhcccccC
Confidence 99999999999999999999999888765421 10 1122334456677778888875
Q ss_pred CCchHHHHHHHHHHHHHH
Q 003553 672 SKSDYYRQNAEHSLAVFE 689 (811)
Q Consensus 672 ~~~~~y~~~A~~~l~~~~ 689 (811)
++|++.+.++.+.+.
T Consensus 260 ---~~~~~~~~~~~~~~~ 274 (321)
T cd04791 260 ---ALYKAAAERLALYLI 274 (321)
T ss_pred ---hHHHHHHHHHHHHhc
Confidence 789998887766554
No 28
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.24 E-value=0.00014 Score=85.60 Aligned_cols=273 Identities=17% Similarity=0.197 Sum_probs=157.7
Q ss_pred hhccccCCCCCC-CCCCC--C---hhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEE-EE-
Q 003553 259 KSYDSRFGGFGS-APKFP--R---PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YS- 330 (811)
Q Consensus 259 ~~~D~~~GGfg~-aPKFP--~---p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgGGF~R-Ys- 330 (811)
..+.+.+||+.+ .|.++ - ...|.-+.+.+..++ |++.++.+...++.+.. -.+ ..||.. |.
T Consensus 39 ~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~-------D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~ 107 (520)
T PF07944_consen 39 PNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTG-------DPELKAKADEIVDELAA--AQQ--PDGYLGTYPE 107 (520)
T ss_pred CCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH--hcc--CCceeccccc
Confidence 344557788762 22222 1 134444444444332 57788888888887766 333 334333 22
Q ss_pred -----cCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccc
Q 003553 331 -----VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRK 405 (811)
Q Consensus 331 -----vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~ 405 (811)
.+..|.. ---.+|...-|+.+...+|+.||++..+++|.+.++|+.+.+..- | .+.
T Consensus 108 ~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~-~-------~~~--------- 168 (520)
T PF07944_consen 108 ERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRL-G-------PEP--------- 168 (520)
T ss_pred ccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC-C-------HHH---------
Confidence 2335554 133489999999999999999999999999999999995433110 0 000
Q ss_pred cCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHH
Q 003553 406 KEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGE 485 (811)
Q Consensus 406 ~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~ 485 (811)
++..
T Consensus 169 -------------------------------------------------~~~~--------------------------- 172 (520)
T PF07944_consen 169 -------------------------------------------------GQKM--------------------------- 172 (520)
T ss_pred -------------------------------------------------hhcc---------------------------
Confidence 0000
Q ss_pred HHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC
Q 003553 486 CRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ 565 (811)
Q Consensus 486 ~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~ 565 (811)
..+.+ +-|..+|+++|+++|| ++||+.|+...+ ...+++.
T Consensus 173 --------------------~~~~~-~~i~~~l~~LY~~Tgd----------------~~yL~lA~~f~~---~~~~~~~ 212 (520)
T PF07944_consen 173 --------------------GYPEH-GGINEALVRLYEITGD----------------ERYLDLAEYFVD---QRGFDPY 212 (520)
T ss_pred --------------------ccccc-chHHHHHHHHHHHhCC----------------HHHHHHHHHHHH---HhCCCCC
Confidence 00011 3344789999999998 799999987664 3333330
Q ss_pred CCeEEEEecCCCC-----CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccc
Q 003553 566 THRLQHSFRNGPS-----KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 640 (811)
Q Consensus 566 ~G~l~~~~~~g~~-----~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li 640 (811)
+..+. .+..+ ...+..=-.+++..|..++|++|||++|++.+..+++.+.++-.= -+||.-.... .|...
T Consensus 213 -~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y-~tGg~g~~~~-~E~f~ 287 (520)
T PF07944_consen 213 -DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMY-ATGGIGSDHE-GEHFG 287 (520)
T ss_pred -chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCee-ccCCCcCCCC-CccCC
Confidence 00000 11111 111222234678899999999999999999999999988765321 2344433310 01110
Q ss_pred cc--ccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003553 641 LR--VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 685 (811)
Q Consensus 641 ~R--~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l 685 (811)
.. ........+-...--+.....+|.+++|+ .+|.+..|+++
T Consensus 288 ~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~l 331 (520)
T PF07944_consen 288 PPYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERAL 331 (520)
T ss_pred CCCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 00 00011113333333466666788999986 78999988664
No 29
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.20 E-value=2.7e-06 Score=82.99 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=47.7
Q ss_pred HHHHHh--hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 130 AFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 130 a~~~Ak--~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.++++. +++|||+|+|+++||+.|+.|+. .+ +++++.+.+....+|||.++.|++.+.|.
T Consensus 13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe~~dla~~y~ 74 (142)
T PLN00410 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITEVPDFNTMYE 74 (142)
T ss_pred HHHHHHHhcCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHcC
Confidence 444444 37999999999999999999986 33 55777765545559999999999999985
No 30
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.12 E-value=2.5e-06 Score=80.05 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
++++..+ ++|+|+|+|+++||..|+.|+. .| +++++.+.+..+.++||++|.|++.+.|.
T Consensus 6 d~~i~~~--~~klVVVdF~a~WC~pCk~mdp-~l--~ela~~~~~~~~f~kVDVDev~dva~~y~ 65 (114)
T cd02986 6 DQAIKST--AEKVLVLRFGRDEDAVCLQLDD-IL--SKTSHDLSKMASIYLVDVDKVPVYTQYFD 65 (114)
T ss_pred HHHHHhc--CCCEEEEEEeCCCChhHHHHHH-HH--HHHHHHccCceEEEEEeccccHHHHHhcC
Confidence 4555555 7999999999999999999976 22 34555553336889999999999999885
No 31
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.11 E-value=4.1e-06 Score=78.85 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHHHHhh--cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 128 EEAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 128 ~~a~~~Ak~--~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.++++.+.. .++||+|+|+++||+.|++|+. .| +++++.+......++||+++.|++.+.|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~l--e~la~~~~~~v~f~kVDvD~~~~la~~~~ 65 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VL--AKIAEDVSNFAVIYLVDIDEVPDFNKMYE 65 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCceEEEEEECCCCHHHHHHcC
Confidence 345666665 6899999999999999999986 22 44555554444579999999999998884
No 32
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.06 E-value=8.2e-07 Score=81.93 Aligned_cols=53 Identities=32% Similarity=0.521 Sum_probs=46.7
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCcc
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD 186 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pd 186 (811)
||+++||++|.|+.+||++|+.|++++++++++...++++|..|.++.+...+
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRD 53 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHH
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccc
Confidence 68899999999999999999999999999999999999899999999865443
No 33
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.92 E-value=0.0018 Score=70.88 Aligned_cols=272 Identities=17% Similarity=0.155 Sum_probs=165.6
Q ss_pred HHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHH-HHhCCCcccCCCcEEEEEcCC
Q 003553 255 EQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQC-MAKGGIHDHVGGGFHRYSVDE 333 (811)
Q Consensus 255 ~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~-Ma~GGi~D~vgGGF~RYsvD~ 333 (811)
.++.++++...|=....=-+|.-..|.=+.+.+.-++ +++.++.+....+. |.. |||-+|.+|.
T Consensus 17 ~~~~~~~~~r~~~~~~~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~~--------~g~~~~~id~ 81 (357)
T COG4225 17 ATMIDRIIARTGPTKDRWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQIDE--------GGLPPRNIDH 81 (357)
T ss_pred HHHHHHHHHhhCCCCccccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhcc--------CCCCccchhh
Confidence 3334444444433334444666666666667666544 36777766555443 222 4566666553
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeee
Q 003553 334 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 413 (811)
Q Consensus 334 ~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~w 413 (811)
- +.-.++.-.|+.|+||.|+..|.+..+|+..+++-.+|||-+-.
T Consensus 82 i--------------~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~--------------------- 126 (357)
T COG4225 82 I--------------AAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV--------------------- 126 (357)
T ss_pred h--------------ccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc---------------------
Confidence 2 22234566788999999999999999999999977778885410
Q ss_pred cHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003553 414 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 493 (811)
Q Consensus 414 t~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~ 493 (811)
+| | +++
T Consensus 127 -------------------------~~--------p---------------------------~Q~-------------- 132 (357)
T COG4225 127 -------------------------KY--------P---------------------------HQM-------------- 132 (357)
T ss_pred -------------------------Cc--------h---------------------------hHh--------------
Confidence 00 0 000
Q ss_pred hcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 003553 494 RSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 573 (811)
Q Consensus 494 R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~ 573 (811)
-.|.- -|...-+++.++++++ ++|++.+..-..-..+++.||++|.+||.|
T Consensus 133 -------W~DtL------~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~w 183 (357)
T COG4225 133 -------WLDTL------YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGW 183 (357)
T ss_pred -------hhcch------hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEee
Confidence 11222 3446678889999987 899999999888889999999999999997
Q ss_pred cCCC-C----CC---CCCcc-hHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcc
Q 003553 574 RNGP-S----KA---PGFLD-DYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSV 639 (811)
Q Consensus 574 ~~g~-~----~~---~~~le-DyA~~i~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l 639 (811)
.... - .- +.|+- ..++++.++.++.+.-.+. .+.+.-..+.+.+.+ .-| ++|-|+..-. ++
T Consensus 184 d~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiLD-d~-- 258 (357)
T COG4225 184 DEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTILD-DG-- 258 (357)
T ss_pred ccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhhc-cC--
Confidence 5322 1 11 11211 4566677777777765432 223333344444433 335 5676665332 21
Q ss_pred cccccCCCCCCCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003553 640 LLRVKEDHDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKD 694 (811)
Q Consensus 640 i~R~k~~~D~a~PS~Nsv~a~~L~r---L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 694 (811)
|+ ....+-|+.+..|-.|++ ++-+. ++|...+++.++.+.+.+..
T Consensus 259 --~~---~sy~EsSaSa~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 259 --RP---GSYLESSASAGFAYALLKGINLGILD-----PEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred --CC---CCchhhhHHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhccc
Confidence 22 123556888888888886 66553 45777888777776665543
No 34
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.89 E-value=2.2e-05 Score=71.11 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=46.9
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
-.+.+|+|+|.|+++||++|+.|.... +++++.++.++..+++|.++.|++.+.|
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~ 63 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA 63 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC
Confidence 345899999999999999999998754 6788888888999999999998876655
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=97.81 E-value=4e-05 Score=74.51 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=53.6
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
..+.++.+.+++|+|+|.|+++||..|+.|.. .| .++++.++.++..++||.++.|++.+.|
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~ 102 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSARF 102 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHhc
Confidence 46678888889999999999999999999987 56 4577888888999999999999887766
No 36
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.78 E-value=0.0015 Score=72.42 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=95.8
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH-HHHHHHHHH
Q 003553 519 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDL 597 (811)
Q Consensus 519 a~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA-~~i~aLL~L 597 (811)
+.+++.++| ++|++.+++++++++.....+..|++.+. .....-.+-|-. ..+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~~----~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWHN----RPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBECT----TTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCccccC----CCCCCceeeccccccHHHHHHH
Confidence 447888887 89999999999999888876556877761 111122234544 477888889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 003553 598 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 677 (811)
Q Consensus 598 YeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y 677 (811)
++.|||++|++.|.+-+....++.+|+++|.|+-...... ..+..+..=--||+=++..|.++.+++.++ ...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~-----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~--~~~ 209 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQG-----YADWSDSFWSRGNGWAIYGLAEVLEYLPED--HPE 209 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTS-----SSTTST--BHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCC-----CcCcccccCcchhhHHHHHHHHHHHHhcch--hhh
Confidence 9999999999999999999999999999987764321110 000000000125666777788888887541 333
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003553 678 RQNAEHSLAVFETRLKD 694 (811)
Q Consensus 678 ~~~A~~~l~~~~~~i~~ 694 (811)
++...++++.+...+.+
T Consensus 210 ~~~~~~~~~~~~~~l~~ 226 (336)
T PF07470_consen 210 RDELLEIAKKLADALAR 226 (336)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445555555554544
No 37
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.8e-05 Score=75.05 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 119 ~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.-++|.+. ++=-++-++.++||+|+|+|.||..|+.|.... .++++-....|...|||.++.|++...|.
T Consensus 43 ~~~~~~s~-~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l---~~~~~~~~g~~k~~kvdtD~~~ela~~Y~ 112 (150)
T KOG0910|consen 43 TLFNVQSD-SEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL---EELVSEYAGKFKLYKVDTDEHPELAEDYE 112 (150)
T ss_pred ccccccCH-HHHHHHHHccCCCEEEEEecCcCccHhHhhHHH---HHHHHhhcCeEEEEEEccccccchHhhcc
Confidence 45888887 677789999999999999999999999997521 23333333478999999999999998884
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.74 E-value=6.2e-05 Score=67.44 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=47.0
Q ss_pred HHHHHHhhc--CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 129 EAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 129 ~a~~~Ak~~--~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+.++.+..+ +|+|+|.|+++||.+|+.|.. .| .++++.++..+..++||.++.|++.+.|
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~~ 64 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEKF 64 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHhc
Confidence 344555554 499999999999999999987 44 4566666668999999999988887666
No 39
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.72 E-value=6.7e-05 Score=68.72 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=46.7
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~-fv~vkvD~ee~pdi~~~y 191 (811)
+.+.++.+.++++||+|.|+++||..|+.|... | .++++.+... ...++||.+ .+++.+.|
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~ 67 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEAD-TIDTLKRY 67 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc
Confidence 367788888899999999999999999999874 4 4566666643 467788888 56655444
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.72 E-value=7e-05 Score=67.68 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh--cccEEEEEcCCC--CccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln--~~fv~vkvD~ee--~pdi~~~y 191 (811)
+..++.+.+++++++|.|+++||+.|+.|.... .++++.+. ..++.+++|.++ .+++.+.|
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~ 71 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY 71 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC
Confidence 456788888899999999999999999998754 35666665 568888999887 66655444
No 41
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.71 E-value=4.3e-05 Score=74.63 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHH
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--~fv~vkvD~ee~pdi~~~y 191 (811)
.++.|.+++|||+|.|+++||++|+.|....- ++++.++. .||.|.||.++.+++.+.|
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~ 72 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRY 72 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHc
Confidence 56778899999999999999999999987432 35555554 4666666655545554444
No 42
>PHA02278 thioredoxin-like protein
Probab=97.69 E-value=6.1e-05 Score=69.70 Aligned_cols=60 Identities=8% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCC----ccHHHHH
Q 003553 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVY 191 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~----pdi~~~y 191 (811)
+-|++..++++||+|+|+++||+.|+.|.. +|+ ++++..+.....++||.++. |++.+.|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~ 68 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF 68 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHHC
Confidence 445666679999999999999999999986 332 23333333333577777654 6776665
No 43
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.69 E-value=6.9e-05 Score=67.19 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.++|||+|.|+++||..|+.|.... .+++..++..+..++||.++.+++.+.|
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~ 62 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQPQIAQQF 62 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCCHHHHHHc
Confidence 4589999999999999999998743 5677777777889999999998887766
No 44
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.65 E-value=7.9e-05 Score=67.71 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.+-|+....++++++|.|+++||..|+.|.. .|+ ++++.+...+..++||.++.|++.+.|
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~ 68 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ 68 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc
Confidence 4456777778899999999999999999987 443 577778777888999999988876655
No 45
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.64 E-value=0.0046 Score=76.79 Aligned_cols=252 Identities=19% Similarity=0.268 Sum_probs=149.9
Q ss_pred EcCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCcccccCcc
Q 003553 330 SVDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGAT 403 (811)
Q Consensus 330 svD~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p-----~Ggfysa~DADs~~~~~~~ 403 (811)
..+..|.+-.-.=.||+ -|-++.+|+..++.++++.|.+.|+++++.+...+... +-|+|+
T Consensus 475 ~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~------------- 541 (825)
T cd04792 475 SDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS------------- 541 (825)
T ss_pred cCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe-------------
Confidence 33445765445667888 89999999999999999999999999999988766432 123332
Q ss_pred cccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHH
Q 003553 404 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 483 (811)
Q Consensus 404 ~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l 483 (811)
|..|-.|+. ..+.+.+++ +++.+.+
T Consensus 542 -G~aGi~~~L--~~l~~~~~~----------------------------------------------------~~~~~~a 566 (825)
T cd04792 542 -GLGGILYAL--THLGKLLKD----------------------------------------------------DRLLNLA 566 (825)
T ss_pred -chhHHHHHH--HHHHHHcCC----------------------------------------------------HHHHHHH
Confidence 222322211 111111110 1111222
Q ss_pred HHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003553 484 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 563 (811)
Q Consensus 484 ~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d 563 (811)
..+.+.+.+.-. +...--++.++-| ++.+|+.+++.+++ +.+++.|.++++++.+....
T Consensus 567 ~~~~~~l~~~~~----~~~~~D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 567 KEILDLIDELIE----KDEKLDFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHhhc----cccCCCEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhh
Confidence 222222221111 1111123444444 45677788888876 78999999999999876543
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccc
Q 003553 564 EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 643 (811)
Q Consensus 564 ~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~ 643 (811)
.+.+ .+ ..+.....++..+.+=.+.+|+.+|++|+|++|++.|.++.+.....| ++..+.|.. ... .
T Consensus 626 ~~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~~--~~~-~----- 692 (825)
T cd04792 626 EDGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWPR--KDG-N----- 692 (825)
T ss_pred ccCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCCC--cCc-C-----
Confidence 2222 22 222234458888889899999999999999999999999998776655 333344431 100 0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 003553 644 KEDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 688 (811)
Q Consensus 644 k~~~D~a~PS~Nsv~a~~L~rL~~l--t~~~~~~~y~~~A~~~l~~~ 688 (811)
.....--.|.+=.+..+++++.+ .++ +.+.+.++.++...
T Consensus 693 --~~~~~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 693 --SFSAAWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred --CCCCcccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 00011123444456677778887 342 56777666666554
No 46
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.61 E-value=0.0021 Score=65.77 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCCC
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPGF 583 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~-g-----~~--~~~~~ 583 (811)
|.+|+.|++||.+++| ++|+++|.++.+...-.. +.|++...+.+ + =+ ...-+
T Consensus 33 G~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~V 93 (189)
T PF06662_consen 33 GQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSYV 93 (189)
T ss_pred HHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCEE
Confidence 7779999999999998 899999999998876443 23555554444 2 11 22357
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHH
Q 003553 584 LDDYAFLISGLLDLYEFGSGTKWLV---WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 660 (811)
Q Consensus 584 leDyA~~i~aLL~LYeaTgd~~yL~---~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~ 660 (811)
|+.+.+.+.||-+++..|++.+..+ ...+.++.++..| |...+.+|+-..-. ..+. -.-+-+.=..+.+.
T Consensus 94 LNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~~---~~~~---~~~a~~~YH~lHi~ 166 (189)
T PF06662_consen 94 LNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHFT---LGNA---PNIARWDYHRLHIQ 166 (189)
T ss_pred eehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhccccc---cccC---cCcCcchHHHHHHH
Confidence 8899999999999999999887654 4455555555545 65444566532100 0000 01122333457778
Q ss_pred HHHHHHHHhCCCCchHHHHHHHH
Q 003553 661 NLVRLASIVAGSKSDYYRQNAEH 683 (811)
Q Consensus 661 ~L~rL~~lt~~~~~~~y~~~A~~ 683 (811)
.|..|+.+|++ +.+.+.|++
T Consensus 167 qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 167 QLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHhcCC---HHHHHHHHH
Confidence 88999999985 777777653
No 47
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.61 E-value=0.011 Score=64.54 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=102.2
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch
Q 003553 507 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD 586 (811)
Q Consensus 507 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leD 586 (811)
++.+-| ++.+|..+++.+++ +.+.+.+.++++++.+......++..............++...
T Consensus 98 ~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG 160 (343)
T cd04434 98 LSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHG 160 (343)
T ss_pred eechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhh
Confidence 444444 45677788887765 6789999999999988775433332211111112234578888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 666 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~ 666 (811)
.+=.+.+|+.+++.+.++.+.+.+.++.....+.+ +.+++.|....... .......--.|.+=++..+++++
T Consensus 161 ~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~~ 232 (343)
T cd04434 161 LAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLAY 232 (343)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHHH
Confidence 88899999999999988888888888887766655 44444443311110 11111233345566778888999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003553 667 SIVAGSKSDYYRQNAEHSLAVFETRLK 693 (811)
Q Consensus 667 ~lt~~~~~~~y~~~A~~~l~~~~~~i~ 693 (811)
.++++ +.+.+.+++++........
T Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 233 KALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 99885 6788888888777655543
No 48
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.60 E-value=0.00011 Score=65.89 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--~fv~vkvD~ee~pdi~~~y 191 (811)
++.++.+.++++++||.|+++||+.|+.|+. .| ++++..+.. ++..+++|.++.+++.+.|
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 65 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF 65 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC
Confidence 4567777779999999999999999999975 44 457777776 6899999999988887666
No 49
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.58 E-value=9.5e-05 Score=69.61 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=49.9
Q ss_pred HHHHHHH---hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHH-HHH
Q 003553 128 EEAFAEA---RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVY 191 (811)
Q Consensus 128 ~~a~~~A---k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~-~~y 191 (811)
++.|..+ .+++++++|.|+++||..|+.|.. .| +++++.+......++||.++.+++. +.|
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~~l~~~~~ 80 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQGKCRKQK 80 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCChHHHHHhc
Confidence 4566666 689999999999999999999987 33 4688888777778999999988886 355
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.57 E-value=0.00016 Score=63.97 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=52.6
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHH--hcccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~l--n~~fv~vkvD~ee~pdi~~~y 191 (811)
.++.+..+.+++++++|.|+.+||++|+.+... | .++++.+ +..+..++||.++.+.+.+.|
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 67 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTANNDLCSEY 67 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccchHHHHHhC
Confidence 456889999999999999999999999999873 3 4677778 578999999999888887766
No 51
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.56 E-value=0.00014 Score=67.36 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCC
Q 003553 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE 183 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee 183 (811)
+++..+++.+||+||.|+++||..|+.|... | .++++.+.. +|+..+||.+.
T Consensus 12 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 12 EALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred HHHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCc
Confidence 4566667889999999999999999999875 4 458877875 58899999876
No 52
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.51 E-value=0.00015 Score=66.68 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=49.2
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc------ccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~------~fv~vkvD~ee~pdi~~~y 191 (811)
..+.|+.+.+++++++|.|+++||..|+.|... |+ ++++.+++ .+..++||.++.+++.+.|
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~ 74 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY 74 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC
Confidence 356788888999999999999999999999873 44 45555542 3678899999988876665
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.50 E-value=0.00016 Score=66.11 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=48.2
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~pdi~~~y 191 (811)
.+++|+++++ +++++|.|+++||..|+.|.. .|+ ++++.++. ++...++|.++.|++.+.|
T Consensus 5 ~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 68 (104)
T cd03000 5 LDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF 68 (104)
T ss_pred chhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc
Confidence 4688888765 789999999999999999987 454 56666643 4777789999888876665
No 54
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.49 E-value=0.0013 Score=77.60 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC----
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF---- 583 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~----~~~~~~---- 583 (811)
+-.++|++.++..++| +++.+.+.++.+.|.+...+ +| ++..+.... ...+.-
T Consensus 63 g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~he 123 (520)
T PF07944_consen 63 GKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMHE 123 (520)
T ss_pred HHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCccc
Confidence 7889999999999988 78999999999999888753 34 555544332 122333
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003553 584 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 663 (811)
Q Consensus 584 leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~ 663 (811)
++....++.||++.|++||+++.|+.|.++++.+.+.. +. +... + ....-.| +...+...|.
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~-~~-----~~~~----~-------~~~~~~~-~~~~i~~~l~ 185 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRL-SR-----LGPE----P-------GQKMGYP-EHGGINEALV 185 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHh-cc-----CCHH----H-------hhccccc-ccchHHHHHH
Confidence 55667899999999999999999999999999983332 10 0000 0 0000112 2345558999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHH
Q 003553 664 RLASIVAGSKSDYYRQNAEHSLAVF 688 (811)
Q Consensus 664 rL~~lt~~~~~~~y~~~A~~~l~~~ 688 (811)
+||++||+ ++|++.|+..++..
T Consensus 186 ~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 186 RLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHhCC---HHHHHHHHHHHHHh
Confidence 99999996 89999998877654
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.48 E-value=0.00018 Score=66.06 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=35.1
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCcc
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD 186 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pd 186 (811)
.+|+|+|.|+++||..|+.|.. .|+ ++++.. .+++.++||.++.++
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~ 59 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDS 59 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChH
Confidence 4999999999999999999864 232 244444 467889999988763
No 56
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.47 E-value=0.00024 Score=64.67 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~A-k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++.|+.. +..+++++|.|+++||..|+.|.. .| .++++.+...+..++||.++.+++.+.|
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 69 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQA 69 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHHc
Confidence 3455554 566889999999999999999976 33 3466666666778899999988876655
No 57
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.45 E-value=0.025 Score=63.87 Aligned_cols=142 Identities=8% Similarity=-0.064 Sum_probs=96.1
Q ss_pred HHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----------cCCCCCCCC
Q 003553 515 ISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAPG 582 (811)
Q Consensus 515 I~ALa~A~~~~-~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-----------~~g~~~~~~ 582 (811)
+++|+.+++.. ++ +.+++.++++.+|+.+++.+...+.++... ..+.....+
T Consensus 178 ~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 178 LALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred HHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC
Confidence 67888888765 43 689999999999998877554333222110 011112345
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHH
Q 003553 583 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 662 (811)
Q Consensus 583 ~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L 662 (811)
+...-+=.+.+++.++++++|+.+.+.|.++.+.+...... .+ ...+...=-|.+=.+..|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-----------------~~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS-----------------KLISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc-----------------cCCCCCcCccHHHHHHHH
Confidence 66666778889999999999999999999998776543211 00 001112334556667889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003553 663 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 694 (811)
Q Consensus 663 ~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 694 (811)
++++..+++ +++.+.|+.+++.+.....+
T Consensus 303 ~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 303 YLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 999999986 67999999888887766554
No 58
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0002 Score=66.77 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+.....+.+.+|+|+|+|+++||+.|+.|+-. =.+++...++ -+.+|||.+|.+++.+-|
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~---~~~La~~y~~-v~Flkvdvde~~~~~~~~ 70 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAPK---FEKLAEKYPD-VVFLKVDVDELEEVAKEF 70 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhhH---HHHHHHHCCC-CEEEEEecccCHhHHHhc
Confidence 45566677778999999999999999999861 1223333333 688999999966665555
No 59
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.39 E-value=0.00031 Score=63.35 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHH-HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--ccEEEEEcCCCC
Q 003553 129 EAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREER 184 (811)
Q Consensus 129 ~a~~~-Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--~fv~vkvD~ee~ 184 (811)
+.++. .++++|+++|.|+++||.+|+.|..+. .++++.++. ++..+++|.++.
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~ 63 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN 63 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch
Confidence 34444 356679999999999999999998744 667777765 689999999875
No 60
>PTZ00051 thioredoxin; Provisional
Probab=97.32 E-value=0.00043 Score=62.15 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++.++.+.+++++++|.|+++||..|+.|.. .|+ ++++... ++..++||.++.+++.+.|
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~~ 67 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEKE 67 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHHC
Confidence 5678888899999999999999999999975 332 3444332 4677889988877665554
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.30 E-value=0.00025 Score=66.06 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=43.0
Q ss_pred hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHH
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~~~y 191 (811)
..+||++|.|+++||..|+.|.. .|. ++++.+.. ++..++||.++.+++.+.|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~ 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARKL 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHHc
Confidence 47899999999999999999987 344 67777764 5788899998887775554
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.28 E-value=0.00028 Score=64.65 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=41.9
Q ss_pred hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCC-CCccHHHHH
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVY 191 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~e-e~pdi~~~y 191 (811)
...||+|+|.|+++||..|+.|.. .|+ ++++.+. .+..++||.+ +.|++.+.|
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~ 68 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSRY 68 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHhc
Confidence 467999999999999999999986 333 4666564 4777889988 788877666
No 63
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.26 E-value=0.00046 Score=59.59 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=44.8
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.++.+.+++++++|.|+++||++|+.+.+ .+ .++++. +.++..+++|.+..+++.+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~--~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 59 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAP-VL--EELAEE-YPKVKFVKVDVDENPELAEEY 59 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhH-HH--HHHHHH-CCCceEEEEECCCChhHHHhc
Confidence 35667777799999999999999999886 33 333333 568889999999878776665
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.26 E-value=0.00042 Score=66.05 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi 187 (811)
.+.+...-++++.++|.||++||+||+.|.... .++++..+..|+.|.+|.+..+++
T Consensus 13 ~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l---~~~~~~~~~~~y~vdvd~~~~~~~ 69 (122)
T TIGR01295 13 VVRALEALDKKETATFFIGRKTCPYCRKFSGTL---SGVVAQTKAPIYYIDSENNGSFEM 69 (122)
T ss_pred HHHHHHHHHcCCcEEEEEECCCChhHHHHhHHH---HHHHHhcCCcEEEEECCCccCcCc
Confidence 456777778899999999999999999997522 344443233455555555443333
No 65
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.25 E-value=0.00047 Score=64.71 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.+.+..+.+++++|+|.|+++||..|+.|.. .+ +++++... +...++||.++.|++.+.|
T Consensus 12 ~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l--~~la~~~~-~i~f~~Vd~~~~~~l~~~~ 71 (113)
T cd02989 12 EKEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HL--EILAKKHL-ETKFIKVNAEKAPFLVEKL 71 (113)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCccHHHHHH-HH--HHHHHHcC-CCEEEEEEcccCHHHHHHC
Confidence 3677888888999999999999999999975 22 23333322 4678999999999988776
No 66
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00043 Score=67.82 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhccCcCeee
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWKV 206 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~e-e~pdi~~~y~~~~q~~~g~gGW~i 206 (811)
-++.+.|..+||.+++-|+...|.+|..|.+++|++++++++|-.||+.+.+|.+ +.|-+- .-||=
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f-----------~~g~k-- 98 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLF-----------KVGDK-- 98 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEe-----------ecCce--
Confidence 4678999999999999999999999999999999999999999999999999985 556542 23441
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHh
Q 003553 207 KDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYH 286 (811)
Q Consensus 207 ~~~w~~~r~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~ 286 (811)
+...+-+++.+.++ .. ..|. + =.||...-|.+.-|-+-+|..+...+.+
T Consensus 99 ---------ee~~s~~ELa~kf~----vr----stPt-------------f-vFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 99 ---------EEKMSTEELAQKFA----VR----STPT-------------F-VFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred ---------eeeecHHHHHHHhc----cc----cCce-------------E-EEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 11112223322221 11 1111 1 2689988899999999999888877776
Q ss_pred hh
Q 003553 287 SK 288 (811)
Q Consensus 287 ~~ 288 (811)
..
T Consensus 148 Va 149 (182)
T COG2143 148 VA 149 (182)
T ss_pred HH
Confidence 54
No 67
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.20 E-value=0.00064 Score=62.17 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=43.6
Q ss_pred HHHHH-hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCC--CccHHHHH
Q 003553 130 AFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVY 191 (811)
Q Consensus 130 a~~~A-k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee--~pdi~~~y 191 (811)
.++.. ++.++|++|.|+++||..|+.|... |+ ++++.++..+..++||.++ .+++.+.|
T Consensus 9 ~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~-~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~ 70 (109)
T cd03002 9 NFDKVVHNTNYTTLVEFYAPWCGHCKNLKPE-YA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY 70 (109)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHhhChH-HH--HHHHHhcCCceEEEEecCccccHHHHHHc
Confidence 34443 5678999999999999999999863 33 5777777767777788776 66665544
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.20 E-value=0.00059 Score=64.91 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHhh--cCCcEEEEEcc-------cCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCc
Q 003553 129 EAFAEARK--RDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP 185 (811)
Q Consensus 129 ~a~~~Ak~--~~Kpi~l~i~~-------~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~p 185 (811)
+.|.+..+ ++|||+|.|++ +||+.|++|+. ++ +++++....+...++||.++.|
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l--~~l~~~~~~~v~fv~Vdvd~~~ 72 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEP-VV--REALKAAPEDCVFIYCDVGDRP 72 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhch-hH--HHHHHHCCCCCEEEEEEcCCcc
Confidence 34444444 38999999999 99999999986 22 2355555546778999998765
No 69
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.17 E-value=0.00093 Score=59.52 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=46.9
Q ss_pred HHHHHHh-hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 129 EAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 129 ~a~~~Ak-~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+.++... +++|+|+|.|+++||+.|+.|... | .++++.++.+...++||.++.+.+.+.|
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 64 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPI-L--EELAKEYEGKVKFVKLNVDENPDIAAKY 64 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHc
Confidence 3444444 446799999999999999999873 4 5777778878999999999888765544
No 70
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.17 E-value=0.0089 Score=65.56 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 623 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 623 (811)
++|++.|+++++++..+. ..+.|+|.|.... + ..-.+|.--....-++.+-+.+++++|.+.+..-+....+...|
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~~--p-~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~D 173 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVKY--P-HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRD 173 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccCc--h-hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccC
Confidence 899999999999999988 4456889986431 1 11222222333445678889999999999999999999999999
Q ss_pred cCCCcccccCCCCCcccccccCCCCCCCC----ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003553 624 REGGGYFNTTGEDPSVLLRVKEDHDGAEP----SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 697 (811)
Q Consensus 624 ~~~Ggyf~t~~~~~~li~R~k~~~D~a~P----S~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 697 (811)
+++|-||-.=+.+.. .+.....-|. | -+|+=.+.+|..+=.+...+ ..-+....++++.....|.++-.
T Consensus 174 p~TGL~YH~wd~~~~--~~w~~~~sG~-~~fWaRg~gW~~mal~d~le~lp~~--~~~r~~l~~~l~d~v~al~r~Qd 246 (357)
T COG4225 174 PETGLYYHGWDEDGT--MPWANNESGE-PAFWARGNGWYAMALADLLELLPED--HPDRRELLNVLRDLVDALIRYQD 246 (357)
T ss_pred CCcCceEEeeccCCC--CccccccCCC-ceeeecccchHHHHHHHHHHhCCCC--CchHHHHHHHHHHHHHHHHHhhc
Confidence 999988843222211 1111221221 2 25666677777777776643 22344455555555555555433
No 71
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.15 E-value=0.00043 Score=62.03 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=48.4
Q ss_pred HHHHHHhhc-CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 129 EAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 129 ~a~~~Ak~~-~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+.++..-.+ +++++|.|+++||+.|+.|.. .=.++++.+...+..++||.++.+++.+.|
T Consensus 7 ~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~ 67 (103)
T PF00085_consen 7 ENFEKFINESDKPVVVYFYAPWCPPCKAFKP---ILEKLAKEYKDNVKFAKVDCDENKELCKKY 67 (103)
T ss_dssp TTHHHHHTTTSSEEEEEEESTTSHHHHHHHH---HHHHHHHHTTTTSEEEEEETTTSHHHHHHT
T ss_pred HHHHHHHHccCCCEEEEEeCCCCCccccccc---eecccccccccccccchhhhhccchhhhcc
Confidence 345555555 999999999999999999986 224567777778999999999998887776
No 72
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.15 E-value=0.0007 Score=67.10 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHHHHHHh--hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak--~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~~~y 191 (811)
++.|++.. ..+++++|.|+++||..|+.|.. +|+ ++++.++. ++..++||.++.|++.+.|
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~ 98 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKF 98 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHc
Confidence 45566654 34679999999999999999986 343 46666653 5889999999999988776
No 73
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.011 Score=67.50 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCC--CcEEEEE-cCCCCC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 003553 299 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRYS-VDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 372 (811)
Q Consensus 299 ~~~~~~~~~~TL~~Ma~GGi~D~vg--GGF~RYs-vD~~W~---vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~ 372 (811)
++...+-+..+.+.+++ +.|..| ||+++-- -..+|. .-|| ||--+-|+.....+|++||++..++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 57788888888888887 888877 7877622 355675 3555 99999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCC
Q 003553 373 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 452 (811)
Q Consensus 373 t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~ 452 (811)
-.+|+.+-+ .|+- +.+ .|.+
T Consensus 159 lADhi~tvf-gp~~--------------~q~----------------------------------~g~~----------- 178 (589)
T COG3533 159 LADHIATVF-GPEE--------------DQV----------------------------------PGYC----------- 178 (589)
T ss_pred HHHhhhhhc-Cccc--------------ccc----------------------------------cccc-----------
Confidence 999998755 2110 000 1111
Q ss_pred CCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhh
Q 003553 453 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESA 532 (811)
Q Consensus 453 f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~ 532 (811)
..+=+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------------gH~eielAl~~Ly~~Tg~----- 196 (589)
T COG3533 179 ---------------------------------------------------------GHPEIELALAELYRLTGD----- 196 (589)
T ss_pred ---------------------------------------------------------CCCchhHHHHHHHHHhcC-----
Confidence 002233478899999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003553 533 MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 612 (811)
Q Consensus 533 ~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~ 612 (811)
++||+.|+...+. ...+| +. .+|.-...++.--..+++.|+.+||+.|||+.+...+..
T Consensus 197 -----------~rYL~LA~~Fi~~---rg~~P-----~~--~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 197 -----------QRYLDLARRFIHQ---RGVEP-----LA--QRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred -----------hHHHHHHHHHHHH---hccCh-----hh--cCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 8999999876543 33222 10 111112245556678999999999999999999999999
Q ss_pred HHHHHHHH
Q 003553 613 LQNTQDEL 620 (811)
Q Consensus 613 L~~~~~~~ 620 (811)
+++.+.++
T Consensus 256 lW~~~t~k 263 (589)
T COG3533 256 LWQNVTTR 263 (589)
T ss_pred HHHHhhhh
Confidence 99987765
No 74
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.07 E-value=0.001 Score=59.87 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~pdi~~~y 191 (811)
..+.++.+..++ +++|.|+++||..|+.|.. .|+ ++++.+.. .+..++||.++.+++.+.|
T Consensus 6 ~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 69 (102)
T cd03005 6 TEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF 69 (102)
T ss_pred CHHHHHHHhhcC-CEEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc
Confidence 356677777665 6999999999999999876 354 45666654 6888999999888776655
No 75
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.07 E-value=0.0012 Score=59.42 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=47.4
Q ss_pred hHHHHHHH-hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~A-k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+++.++.. .+.+++++|.|+++||+.|+.|... | .++++.+...+..+++|.++.+++.+.|
T Consensus 6 ~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~~ 68 (103)
T cd03001 6 TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQY 68 (103)
T ss_pred CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHHC
Confidence 45566665 4557779999999999999999764 4 4567777767888999999888775554
No 76
>PRK09381 trxA thioredoxin; Provisional
Probab=97.05 E-value=0.00095 Score=61.38 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=44.1
Q ss_pred hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.+.+++++|.|+++||+.|+.|.. .|+ ++++.++..+..++||.+..+.+.+.|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~ 71 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPKY 71 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHhC
Confidence 456999999999999999999986 333 666777777888999999888876655
No 77
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.99 E-value=0.017 Score=59.18 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 344 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 344 LyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
-..|++.+.+|++||++|+|+.|+++|+++++.+.-.. .+||+-+
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~--~~GG~~~ 73 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPV--EEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChH--hhCCeeE
Confidence 34699999999999999999999999999999876533 4688765
No 78
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.99 E-value=0.001 Score=59.87 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=42.6
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh--cccEEEEEcCCC-CccHHHHH
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVY 191 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln--~~fv~vkvD~ee-~pdi~~~y 191 (811)
.++.+|+++|.|+++||..|+.|... =.++++.+. .+++.+++|.++ .+++.+.|
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~~---~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~ 71 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAPE---YEKLAAVFANEDDVVIAKVDADEANKDLAKKY 71 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhChH---HHHHHHHhCCCCCEEEEEEECCCcchhhHHhC
Confidence 34467799999999999999999662 344555554 469999999988 78776665
No 79
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.90 E-value=0.0014 Score=61.51 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=44.4
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.+..+.+.+++|+|.|+++||.+|+.|.. .++ ++++.. +....++||.++.|++...|+
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~--~la~~~-~~i~~~~vd~d~~~~l~~~~~ 72 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLE--ELSELS-DKLKLEIYDFDEDKEKAEKYG 72 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHH-HHH--HHHHhc-CceEEEEEeCCcCHHHHHHcC
Confidence 35556677899999999999999999886 332 234332 445678899999999888874
No 80
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=96.88 E-value=0.0051 Score=70.82 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC---Ccch
Q 003553 510 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG---FLDD 586 (811)
Q Consensus 510 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~---~leD 586 (811)
-.+.++.|||.|++++++. +.+| ..++|+.|+++.+|..++-.. + .........+ -.+.
T Consensus 155 ~~~~~AAalA~As~v~k~~--d~~~--------A~~~L~~A~~~~~~a~~~~~~-----~---~~~~~~~~~~~Y~~~~~ 216 (444)
T PF00759_consen 155 ATAEFAAALAAASRVFKDF--DPAY--------AAQCLKAAKEAYAFAKKNPGV-----Y---SDNPQPNGGGFYNSSGY 216 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTT--THHH--------HHHHHHHHHHHHHHHHHSTTH-----G---GGTSTCTTTTTSHCS-S
T ss_pred HHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCCCc-----c---cCCcccccCCcccCCCc
Confidence 3477889999999999862 1222 257899999999999876421 1 0111010100 0223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 617 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~ 617 (811)
.-.++.|.++||.+||+++|++.|.+....+
T Consensus 217 ~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 217 EDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 3457889999999999999999998777443
No 81
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.073 Score=61.10 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 591 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 591 (811)
+-+|.|+..+++++|. ...|+.+.+++++|...| +++.+. .....+ +-.+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvf-gp~~~q--------~~g~~g----H~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVF-GPEEDQ--------VPGYCG----HPEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhc-Cccccc--------cccccC----CCchh
Confidence 6678999999999997 689999999999999888 333221 111122 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHH----HHHHHHHHHH
Q 003553 592 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 667 (811)
Q Consensus 592 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv----~a~~L~rL~~ 667 (811)
.||.+||++|||++||+.|......- -.++ +. -|..+. + .+.++ ....+.+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~r---g~~P-----~~---------~rg~e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQR---GVEP-----LA---------QRGDEL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---ccCh-----hh---------cCchhh-h----hhhHHHHHHHhhhHHHHHH
Confidence 79999999999999999998554321 1111 10 011011 1 23333 3334668999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHH
Q 003553 668 IVAGSKSDYYRQNAEHSLAVFET 690 (811)
Q Consensus 668 lt~~~~~~~y~~~A~~~l~~~~~ 690 (811)
++|+ +.++..++.+.+.+..
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t~ 262 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVTT 262 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhhh
Confidence 9986 6788888877666543
No 82
>PLN03009 cellulase
Probab=96.82 E-value=0.023 Score=66.48 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC-Ccc---hH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG-FLD---DY 587 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~-~le---Dy 587 (811)
+-+..+||.|++++++. +..| ..++|+.|+++.+|..++- |. +....+......+ +.+ ..
T Consensus 176 ~~~AAalA~as~vfk~~--D~~Y--------A~~ll~~Ak~ly~~a~~~~-----g~-y~~~~~~~~g~~~~Y~~~s~~~ 239 (495)
T PLN03009 176 GETAAALAASSMAFRSS--DPGY--------SETLLRNAIKTFQFADMYR-----GA-YSDNDDIKDGVCPFYCDFDGYQ 239 (495)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CC-ccCCccccCccccCcCCccccc
Confidence 77889999999999862 1122 1467999999999998641 22 1111000000001 111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003553 588 AFLISGLLDLYEFGSGTKWLVWAIEL 613 (811)
Q Consensus 588 A~~i~aLL~LYeaTgd~~yL~~A~~L 613 (811)
=.+++|.++||.+|||++|++.+...
T Consensus 240 DE~~WAAawLy~aTgd~~Yl~~~~~~ 265 (495)
T PLN03009 240 DELLWGAAWLRRASGDDSYLNYIENN 265 (495)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 45688999999999999999988654
No 83
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.80 E-value=0.0021 Score=58.09 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~~~y~ 192 (811)
++.|++..+ ++ ++|.|+++||+.|+.|... |+ ++++.+.. .+...+||.++.|++.+.|.
T Consensus 8 ~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~~ 68 (101)
T cd02994 8 DSNWTLVLE-GE-WMIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQEPGLSGRFF 68 (101)
T ss_pred hhhHHHHhC-CC-EEEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCCHhHHHHcC
Confidence 455665553 44 7899999999999999873 55 44555543 57888999999888876663
No 84
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.78 E-value=0.0024 Score=67.27 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.+++++|.|+++||+.|+.|+.+ | +++++.+...+...+||.++.+++.+.|
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~ 102 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF 102 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc
Confidence 47999999999999999999985 3 5778888777777899999988887766
No 85
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.74 E-value=0.16 Score=59.97 Aligned_cols=291 Identities=17% Similarity=0.181 Sum_probs=158.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeec
Q 003553 335 WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWT 414 (811)
Q Consensus 335 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt 414 (811)
-.|+-||-.. ++|..+.-||.+++++.|++.|.+..+-|+.-+-.|.|==|..++-... .. ...-|.
T Consensus 149 ~~vsvFEttI----R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--------~~-~~~~~~ 215 (522)
T PTZ00470 149 LGVSVFETTI----RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--------RK-SYPGWA 215 (522)
T ss_pred Ceeeeeeeeh----hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--------CC-CCcccC
Confidence 3467788555 5888888999999999999999999999998886666644443332110 00 000111
Q ss_pred HHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc-hHHHHHcCCC-HHHHHHHHHHHHHHHHh
Q 003553 415 SKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLFD 492 (811)
Q Consensus 415 ~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~-~~~a~~~g~~-~~~l~~~l~~~r~~L~~ 492 (811)
.+...+.-..+. -|+..+..++ .++..+..+.+.+.|.+
T Consensus 216 ---------------------------------------~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 216 ---------------------------------------GGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFS 256 (522)
T ss_pred ---------------------------------------CCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 000011111110 0222222222 24455666677777765
Q ss_pred hhcCCC--CC-CCCcc------hhhccHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003553 493 VRSKRP--RP-HLDDK------VIVSWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 560 (811)
Q Consensus 493 ~R~~R~--~P-~~DdK------iltsWNal~---I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~ 560 (811)
.|...+ -| ++|.. -..+|-|+. -.=|.+.+..++.. .+.|.++-.++++-+.++
T Consensus 257 ~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i~~~ 322 (522)
T PTZ00470 257 MKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGIIEH 322 (522)
T ss_pred cCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHHHHH
Confidence 543210 01 11110 001122221 12456667676531 267888888888888887
Q ss_pred cccc-CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHccccCCCc----
Q 003553 561 LYDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG---- 628 (811)
Q Consensus 561 l~d~-~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYea-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg---- 628 (811)
+... .+|.++..-.+|.. .....+--+.++-|++.|.-. ..+++|++.|++|.+.+...+....+|-
T Consensus 323 l~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~ 401 (522)
T PTZ00470 323 LYKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEI 401 (522)
T ss_pred hcccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCce
Confidence 6432 22333333222221 122233446667788887642 2357899999999999988775444442
Q ss_pred ccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 003553 629 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 701 (811)
Q Consensus 629 yf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 701 (811)
|.+.... .... ....|...+= --..++.+.-|+++||+ +.|++.+.++++.+.... +.+.|++.
T Consensus 402 ~~~~~~~-~~~~---~~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~ 465 (522)
T PTZ00470 402 FHFDPNS-GDIS---PNVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSG 465 (522)
T ss_pred EEeccCc-cccc---cccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCccccc
Confidence 2221110 0000 0001111110 12688899999999996 899999999999976654 45666655
No 86
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.60 E-value=0.0025 Score=59.74 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCC--CCccHHHHH
Q 003553 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE--ERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~A-k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~e--e~pdi~~~y 191 (811)
++.|+.. +..+|+|||.|+++||+.|+.|.. +|+ ++++.+.+ .+...+||.+ +.+++.+.|
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~ 74 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF 74 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC
Confidence 4455555 445689999999999999999987 455 47777753 2556778853 345454433
No 87
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.60 E-value=0.19 Score=56.04 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHH
Q 003553 514 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 592 (811)
Q Consensus 514 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~~~~~~leDyA~~i~ 592 (811)
++++|+.++..+++ +++.+.+.++.+++.+.. .+ .|.+.....+. ......+...-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-FP-SGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-cc-CCCCCCccCCCCCCccccccCCCchHHH
Confidence 36678888887766 689999999999998763 32 34322111111 1111233333444677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003553 593 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 672 (811)
Q Consensus 593 aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 672 (811)
+++.++++++|+++++.|....+.+.+. | +.. .++.+- .| -+| .+..|++++..+++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~---~~~~lC-------HG--~~G---~~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLK---KGPGLC-------HG--IAG---NAYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-Ccc---CCCccc-------cC--ccc---hHHHHHHHHHHhCc-
Confidence 8999999999999999998887765421 1 000 000110 00 133 35788899999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 003553 673 KSDYYRQNAEHSLAVFETRLK 693 (811)
Q Consensus 673 ~~~~y~~~A~~~l~~~~~~i~ 693 (811)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999988777665543
No 88
>PLN02420 endoglucanase
Probab=96.52 E-value=0.073 Score=62.63 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 591 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 591 (811)
+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+-.....+.+........+-.++
T Consensus 190 a~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~ 254 (525)
T PLN02420 190 GETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFEFGDKYR-----GKYDESLKVVKSYYASVSGYMDELL 254 (525)
T ss_pred HHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhcC-----CccCCCCcccCCCCCCcCcccHHHH
Confidence 77889999999999862 1122 2567999999999987532 2110000000111111111245778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003553 592 SGLLDLYEFGSGTKWLVWAIELQ 614 (811)
Q Consensus 592 ~aLL~LYeaTgd~~yL~~A~~L~ 614 (811)
+|...||.+|||+.|++.|.+..
T Consensus 255 WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 255 WGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999887543
No 89
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.52 E-value=0.21 Score=60.88 Aligned_cols=222 Identities=19% Similarity=0.191 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEE----EEcC-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003553 301 EGQKMVLFTLQCMAKGGIHDHVGGGFHR----YSVD-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDIL 374 (811)
Q Consensus 301 ~~~~~~~~TL~~Ma~GGi~D~vgGGF~R----YsvD-~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~ 374 (811)
....+|..--+.|+..+|.-...+-..+ +..+ ..|.+------||| -|-++-.|+...++||+..|+++|.+++
T Consensus 597 ~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L 676 (963)
T COG4403 597 YFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKAL 676 (963)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4445555555555555554433332222 2223 66776445567888 8889999999999999999999999999
Q ss_pred HHHHHhccCCC-----CceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCC
Q 003553 375 DYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDP 449 (811)
Q Consensus 375 ~fl~~~m~~p~-----Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp 449 (811)
.=+.+.+.... |||. |--|-|| ..--|.+.++
T Consensus 677 ~~~~~sv~~~~~~~~iga~~---------------G~~g~~y--al~~I~~~~~-------------------------- 713 (963)
T COG4403 677 QDSRKSVNNNLNPINIGAFT---------------GLSGYFY--ALWKIYSVTR-------------------------- 713 (963)
T ss_pred HHHHHhhhhccCCccccccc---------------ccchhhh--hhHHHHHhcc--------------------------
Confidence 98888765422 3332 2233333 2211222222
Q ss_pred CCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHH--HHHHHHHHHHhhh
Q 003553 450 HNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKS 527 (811)
Q Consensus 450 ~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~--I~ALa~A~~~~~d 527 (811)
.+.|. ....+.+. ..+.+.+. .. |--+ -||+. |..|...|+.+.+
T Consensus 714 ------~~~l~----------------~~~~~~i~-~le~~v~~--~~-----~~d~---i~Gl~g~i~~L~~iYk~~~e 760 (963)
T COG4403 714 ------DNYLI----------------QSAENSIR-HLEILVQK--SK-----DPDF---INGLAGVICVLVSIYKLTDE 760 (963)
T ss_pred ------cHHHH----------------HHHHHHHH-HHHHHHhh--cc-----Ccch---hhccHHHHHHHHHHHhhccc
Confidence 11110 00111111 11222211 11 1111 23444 7788889988765
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHH
Q 003553 528 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWL 607 (811)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL 607 (811)
|+.++.|..+.+.+.+.....+. .+....++...-+-.|.+|+.||++||++.++
T Consensus 761 ----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~ 815 (963)
T COG4403 761 ----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEESLL 815 (963)
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHHHH
Confidence 89999999999999877643221 11133477777888999999999999999999
Q ss_pred HHHHHHHHHHHHHccc
Q 003553 608 VWAIELQNTQDELFLD 623 (811)
Q Consensus 608 ~~A~~L~~~~~~~F~D 623 (811)
..+.++..+-..+|-+
T Consensus 816 ~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 816 KKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988777765
No 90
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.51 E-value=0.0029 Score=72.42 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=50.6
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~pdi~~~y 191 (811)
.++.++.+.+++|++||.|+++||+.|+.|..+. .++++.++. ++..++||.++.+++.+.|
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~ 71 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY 71 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC
Confidence 3567888888999999999999999999998754 456666654 3789999999988876665
No 91
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.51 E-value=1.3 Score=48.27 Aligned_cols=133 Identities=12% Similarity=-0.011 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchHHHHH
Q 003553 514 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 591 (811)
Q Consensus 514 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~--~~~g~~~~~~~leDyA~~i 591 (811)
++.+|+.+++.+.+ +.+.+.++.+..++.+...+ + ++.++. ..++.....++...-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 47788899988754 56777777777766655433 2 332221 1112223345555566788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003553 592 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 671 (811)
Q Consensus 592 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 671 (811)
.+++.++++++++.+++.+.+..+.+.+..... . .+...=.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------L------------KNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------C------------CCCCcCcCccchHHHHHHHHHHhCC
Confidence 899999999999999999999888776654210 0 0112223445567788889999985
Q ss_pred CCchHHHHHHHHHHHHH
Q 003553 672 SKSDYYRQNAEHSLAVF 688 (811)
Q Consensus 672 ~~~~~y~~~A~~~l~~~ 688 (811)
+.+++.|+.+....
T Consensus 285 ---~~~~~~a~~~~~~~ 298 (343)
T cd04434 285 ---LKFLARALALALLL 298 (343)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 67888887665543
No 92
>PLN02345 endoglucanase
Probab=96.50 E-value=0.053 Score=63.00 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 589 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~leDyA~ 589 (811)
+-+..|||.|++++++.. ..| ..++|+.|+++.+|..++- |.+..+..++.. ...++-| .
T Consensus 145 ~~~AAAlA~as~vfk~~D--~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D---E 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSSD--STY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD---E 206 (469)
T ss_pred HHHHHHHHHHHHHhccCC--HHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---H
Confidence 778889999999998621 112 1468999999999998752 111110000000 0112223 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003553 590 LISGLLDLYEFGSGTKWLVWAI 611 (811)
Q Consensus 590 ~i~aLL~LYeaTgd~~yL~~A~ 611 (811)
+++|.+.||.+|||+.|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6889999999999999999875
No 93
>PLN02266 endoglucanase
Probab=96.50 E-value=0.15 Score=59.91 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-----CCC---CCC
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-----SKA---PGF 583 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~-----~~~---~~~ 583 (811)
+-++.|||.|++++++. +..| ..++|+.|+++.+|..++= |.+ .++. +.. .++
T Consensus 193 ~e~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~fa~~~~-----g~y----~~~~~~~~~~~y~s~s~~ 253 (510)
T PLN02266 193 AETAAALAAASLVFRKS--DPTY--------SKLLVRRAIRVFQFADKYR-----GAY----SNGLKPDVCPFYCSYSGY 253 (510)
T ss_pred HHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCc----cCCCCcccCCCcccCCcc
Confidence 77899999999999862 1122 1568999999999988642 111 1110 111 122
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003553 584 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 614 (811)
Q Consensus 584 leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~ 614 (811)
.| .+++|.++||.+|||+.|++.+....
T Consensus 254 ~D---El~WAAawLy~ATGd~~Yl~~~~~~~ 281 (510)
T PLN02266 254 QD---ELLWGAAWLHKATKNPTYLNYIQVNG 281 (510)
T ss_pred hH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 23 55778899999999999999887654
No 94
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.49 E-value=0.92 Score=56.62 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHH
Q 003553 511 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 590 (811)
Q Consensus 511 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~ 590 (811)
++=++++|+.+++++++ ++|++.|.++.++....+.. +.+.. ...++.....++....+=.
T Consensus 645 ~sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~-~~~~w--~~~~~~~~~~~WChG~~GI 705 (825)
T cd04792 645 ASGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSE-EGWNW--PRKDGNSFSAAWCHGAPGI 705 (825)
T ss_pred HHHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCH-hhcCC--CCcCcCCCCCcccCCcHHH
Confidence 34457899999999987 78999999999987666532 21111 1111112234566667777
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHH
Q 003553 591 ISGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 668 (811)
Q Consensus 591 i~aLL~LYea--Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 668 (811)
+.+++.++++ ..++.+.+.+.++.+.+.+... .. +. ..--|++=.+..|+.++..
T Consensus 706 ~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~--------~~---~~------------slCHG~~Gil~~ll~~~~~ 762 (825)
T cd04792 706 LLARLELLKFNDLDDEELKEEIEIALKTTLKEGF--------GN---NH------------SLCHGDLGNLEILLYAAKA 762 (825)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC--------CC---CC------------eecCCCcchHHHHHHHHHh
Confidence 8899999999 6888888888887776654321 00 00 1112333345678888998
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHh
Q 003553 669 VAGSKSDYYRQNAEHSLAVFETRLKD 694 (811)
Q Consensus 669 t~~~~~~~y~~~A~~~l~~~~~~i~~ 694 (811)
+++ ++|.+.|+.+...+.....+
T Consensus 763 ~~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 763 FGD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred cCC---HHHHHHHHHHHHHHHHHHHh
Confidence 875 67888888877766555543
No 95
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=96.48 E-value=1 Score=52.01 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCCHHH
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 606 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-----------------~~~leDyA~~i~aLL~LYeaTgd~~y 606 (811)
++.++.++....--.+..||++++.|.-.+.+|+... .++.-+ ...+..++..|.+++|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~-~~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPAD-PDYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE---HHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCc-hhHhHHHHHHHHcCCCHHH
Confidence 6889999998887788889999998888888875421 122222 2345699999999999998
Q ss_pred HHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003553 607 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 686 (811)
Q Consensus 607 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 686 (811)
.+.+..+++ +|- =|.+-......+.+ +....+....++.+++.|++.|++ +.|++.|+++=+
T Consensus 406 w~~~~~m~~----~~g---LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAH----HFG---LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHH----HTT----EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHh----hcC---cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 888887774 331 12122111111111 223344555788899999999986 899999987766
Q ss_pred HHHHHH
Q 003553 687 VFETRL 692 (811)
Q Consensus 687 ~~~~~i 692 (811)
.+..+-
T Consensus 468 ~l~~~~ 473 (557)
T PF06917_consen 468 NLFEQH 473 (557)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 96
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.46 E-value=0.16 Score=56.25 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 345 YDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 345 yDNA~Ll~~ya~Ay~~t~--d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
.+.|..+.++..+....+ ++.+.+.++++++||.+. +.++|||..
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~-Q~~dG~f~~ 138 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSM-QNSNGGFAA 138 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHh-ccCCCCEee
Confidence 378999999998888763 577899999999999974 678999864
No 97
>PLN02340 endoglucanase
Probab=96.44 E-value=0.046 Score=65.40 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcchHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLDDYAF 589 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~--~~~leDyA~ 589 (811)
+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+-.+...+.... .++- =.
T Consensus 179 ~e~AAAlAaas~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~s~~~a~~~Y~ss~~~---DE 240 (614)
T PLN02340 179 GETAAALAAASKAFKPY--NSSY--------SDLLLVHAKQLFSFADKFR-----GLYDDSIQNAKKFYTSSGYS---DE 240 (614)
T ss_pred HHHHHHHHHHHHhccCC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCccCCCCccccCCCCCCcc---hH
Confidence 77889999999999862 1122 1567999999999997742 21100001111100 1222 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003553 590 LISGLLDLYEFGSGTKWLVWAIELQN 615 (811)
Q Consensus 590 ~i~aLL~LYeaTgd~~yL~~A~~L~~ 615 (811)
+++|...||.+|||+.||+.+.....
T Consensus 241 l~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 241 LLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 68899999999999999999887644
No 98
>PLN02909 Endoglucanase
Probab=96.42 E-value=0.13 Score=60.15 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---CCCCcchHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLDDYA 588 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~---~~~~leDyA 588 (811)
+-+..||+.|++++++. +..| ..++|+.|+++++|..++= |. + .+..+. ..++.|
T Consensus 183 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y---~~~~~~y~s~s~y~D--- 240 (486)
T PLN02909 183 AETAAAMAASSMVFRHV--DHKY--------SRRLLNKAKLLFKFAKAHK-----GT-Y---DGECPFYCSYSGYND--- 240 (486)
T ss_pred HHHHHHHHHHHHhhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CC-c---CCCCCccccCCCcch---
Confidence 77889999999999862 1122 1568999999999998762 11 1 011111 122323
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 003553 589 FLISGLLDLYEFGSGTKWLVWAIE 612 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd~~yL~~A~~ 612 (811)
.+++|..+||.+|||+.||+.+..
T Consensus 241 El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 241 ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568899999999999999997764
No 99
>PLN02171 endoglucanase
Probab=96.41 E-value=0.11 Score=62.58 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--ccc---CCCeEEEEecCCCCCCCCCcch
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YDE---QTHRLQHSFRNGPSKAPGFLDD 586 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l--~d~---~~G~l~~~~~~g~~~~~~~leD 586 (811)
+-+.+|||.|++++++. +..| ..++|+.|+++++|..++= ++. ...++|.+ ..++.
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s-------~s~y~-- 239 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRS-------VSGYG-- 239 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCC-------CCCcc--
Confidence 77789999999999762 1122 1467999999999998752 110 00111110 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQN 615 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~ 615 (811)
=.+++|..+||.+|||+.||+.+....+
T Consensus 240 -DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 240 -DELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568899999999999999998876544
No 100
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0039 Score=67.36 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=43.3
Q ss_pred hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
...+||+|+|+++||+.|+.+... =..++.--+-.|+.+|||.++.|+|...+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~---Lekla~~~~G~f~LakvN~D~~p~vAaqf 93 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPT---LEKLAAEYKGKFKLAKVNCDAEPMVAAQF 93 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHH---HHHHHHHhCCceEEEEecCCcchhHHHHh
Confidence 345799999999999999998752 23455555668999999999999998877
No 101
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.35 E-value=0.0061 Score=56.83 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++||+|.|+++||..|+.|.. .+ .++++... +...++||.++. ++.+.|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~-~l--~~la~~~~-~v~f~~vd~~~~-~l~~~~ 72 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS-HL--EELAAKYP-ETKFVKINAEKA-FLVNYL 72 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH-HH--HHHHHHCC-CcEEEEEEchhh-HHHHhc
Confidence 499999999999999999986 33 34555443 345678998876 665554
No 102
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.34 E-value=0.015 Score=63.09 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=61.6
Q ss_pred chhhccH---HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC
Q 003553 505 KVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP 581 (811)
Q Consensus 505 KiltsWN---al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~ 581 (811)
+.|+.|- .=+|..|++||+|+++ ++|++.|.++++-+++.-.-+.+-++-| |.+
T Consensus 273 drLVhWcHGApGv~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva--- 329 (403)
T KOG2787|consen 273 DRLVHWCHGAPGVAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA--- 329 (403)
T ss_pred ceeeeeccCCchHHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---
Confidence 3466663 2357789999999997 7999999999999976422222222332 211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003553 582 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 620 (811)
Q Consensus 582 ~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 620 (811)
=-.+++|.||.+|+|.+||.+|.+.++.+.+.
T Consensus 330 -------GNaYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 330 -------GNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred -------CchhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 11345677999999999999999999998764
No 103
>PHA02125 thioredoxin-like protein
Probab=96.27 E-value=0.0048 Score=53.39 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=33.0
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++.|+++||++|+.|+.. ++ ++ .|..++||.++.+++.+.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l~--~~------~~~~~~vd~~~~~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-LA--NV------EYTYVDVDTDEGVELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHH-HH--HH------hheEEeeeCCCCHHHHHHc
Confidence 688999999999999874 32 12 3678999999999988877
No 104
>PLN02613 endoglucanase
Probab=96.20 E-value=0.21 Score=58.54 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcchH
Q 003553 511 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDY 587 (811)
Q Consensus 511 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~---~~~~~leDy 587 (811)
-+-+..|||.|++++++. +..| ..++|+.|+++.+|..++= |.+ .+..+ ...++.|+
T Consensus 174 a~~~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~~a~~~~-----g~y----~~~~~~y~s~s~~~DE- 233 (498)
T PLN02613 174 AGEAAAALAAASLVFKDV--DSSY--------SSKLLNHARSLFEFADKYR-----GSY----QASCPFYCSYSGYQDE- 233 (498)
T ss_pred HHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCc----CCCCCcccccCccchH-
Confidence 377899999999999862 1122 2568999999999998651 111 01111 01233343
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003553 588 AFLISGLLDLYEFGSGTKWLVWAIE 612 (811)
Q Consensus 588 A~~i~aLL~LYeaTgd~~yL~~A~~ 612 (811)
+++|.++||.+|||+.|++.+..
T Consensus 234 --l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 234 --LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHh
Confidence 57789999999999999987764
No 105
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.19 E-value=0.0061 Score=57.29 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=53.7
Q ss_pred CccccChHHHHHHHhhcCCcEEEEEcccC--chhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 121 VDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 121 v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~--C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.+|-.-++..|+.--+.|.+++|.|+++| |+.|+.|+. .=+++++.+......++||.++.|.+...|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P---~leela~e~~~~v~f~kVdid~~~~la~~f~ 80 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAV---VLPELLKAFPGRFRAAVVGRADEQALAARFG 80 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHh---HHHHHHHHCCCcEEEEEEECCCCHHHHHHcC
Confidence 34555556666666688999999999997 999999986 2245667666666788999999999998883
No 106
>PTZ00102 disulphide isomerase; Provisional
Probab=96.16 E-value=0.0058 Score=70.68 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~pdi~~~y 191 (811)
++.++.+.++++++||.|+++||+.|+.|..+.. ++++.+++ +++.++||.++.+++.+.|
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~ 102 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQEF 102 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHhc
Confidence 5677888889999999999999999999987532 45555543 5889999999998887776
No 107
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.11 E-value=0.0088 Score=69.23 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=37.5
Q ss_pred hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcc-cEEEEEcCCCC
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREER 184 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~-fv~vkvD~ee~ 184 (811)
+..+|+|||.|+++||+.|+.|+.. | +++++.+... +..++||.+..
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCC
Confidence 5689999999999999999999874 4 7788877653 56677777643
No 108
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.09 E-value=0.033 Score=65.55 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCC-CCCcccccccCCCCCCCCChHHHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 665 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL 665 (811)
..=.+-|||.+|.+|+|+.||++|++|.+.+..-| |..+|--+..-. .......+.. ....+..+.-+.+...+.+|
T Consensus 157 tIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~~L 234 (522)
T PTZ00470 157 TIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFNYL 234 (522)
T ss_pred ehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHHHH
Confidence 34458899999999999999999999999999888 555553221111 1100000000 01233445555677778999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHH
Q 003553 666 ASIVAGSKSDYYRQNAEHSLAVFET 690 (811)
Q Consensus 666 ~~lt~~~~~~~y~~~A~~~l~~~~~ 690 (811)
+++||+ ++|.+.|+++.+.+..
T Consensus 235 S~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 235 SEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHhhCC---HHHHHHHHHHHHHHHh
Confidence 999996 8999999999988864
No 109
>PLN02308 endoglucanase
Probab=96.02 E-value=0.2 Score=58.59 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC---CCCCCcchH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 587 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~---~~~~~leDy 587 (811)
+-++.|||.|++++.+. +..| ..++|+.|+++.+|..++- |.+....... .+ ...++.
T Consensus 175 ~~~AAAlA~as~vf~~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~--- 236 (492)
T PLN02308 175 GETAAALAAASIVFRKR--DPAY--------SRLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQ--- 236 (492)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCccc---
Confidence 78899999999999851 1122 1568999999999998752 2110000000 00 001222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003553 588 AFLISGLLDLYEFGSGTKWLVWAIEL 613 (811)
Q Consensus 588 A~~i~aLL~LYeaTgd~~yL~~A~~L 613 (811)
=.+++|..+||.+|||++||+.+...
T Consensus 237 DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 237 DELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35688999999999999999987654
No 110
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.01 E-value=0.015 Score=58.37 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.9
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCC
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee 183 (811)
....+|+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++
T Consensus 59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCC
Confidence 334689999999999999999875 45666666778888888654
No 111
>PLN00119 endoglucanase
Probab=95.99 E-value=0.2 Score=58.59 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 590 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~~~leDyA~~ 590 (811)
+-+..|||.+++++++. +..| ..++|+.|+++.+|..++- |. +... .++...... ...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~~~~~~~~g~Y~s-s~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----GL-YQNSIPNAGGFYAS-SGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----Cc-ccCCCCCCCCCCCC-CchhhHH
Confidence 77888999999999862 1122 2568999999999998742 11 1110 011111000 1223468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 003553 591 ISGLLDLYEFGSGTKWLVWAIE 612 (811)
Q Consensus 591 i~aLL~LYeaTgd~~yL~~A~~ 612 (811)
++|...||.+|||+.|++.+..
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 8999999999999999987553
No 112
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.92 E-value=0.34 Score=56.42 Aligned_cols=300 Identities=15% Similarity=0.055 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEE-EEcCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003553 300 SEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 376 (811)
Q Consensus 300 ~~~~~~~~~TL~~Ma~GGi~D~vgGGF~R-YsvD~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~f 376 (811)
+..++.|..--+++.. .+|--.|=.+. +.....-. .|.-+-.|-+-+-++--|....++|||+.|.+.|+++.+.
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~ 175 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA 175 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHH
Confidence 4556666666666655 56654454442 33322111 1222346778888888899999999999999999999999
Q ss_pred HHH--hccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCC
Q 003553 377 LRR--DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEF 453 (811)
Q Consensus 377 l~~--~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~-~~~~~~~y~l~~~Gn~e~~~~~dp~~~f 453 (811)
|.+ .-....|-+-..+|+++.. -.+..+.|. +.+|. .+.+.+.|-+....
T Consensus 176 l~~~~~~~~~~gL~p~~id~~~g~-------~~~~~~~~G------a~~DS~YEYLlK~~lL~g~~-------------- 228 (452)
T PF01532_consen 176 LWRSQNRSKIPGLFPNFIDPSTGK-------WTSSSISLG------AGGDSFYEYLLKMYLLLGGT-------------- 228 (452)
T ss_dssp HHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SS------TTTHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHhhhccCCcccCcceecCCcCc-------ccccccccC------CCcchHHHhhhhhhhhcCcc--------------
Confidence 988 2222344444467776531 112333333 11122 23344444332100
Q ss_pred CCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCC---CCCCCcch----------hhccHHHHHHHHHH
Q 003553 454 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRP---RPHLDDKV----------IVSWNGLVISSFAR 520 (811)
Q Consensus 454 ~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~---~P~~DdKi----------ltsWNal~I~ALa~ 520 (811)
.+.+ .+...+.++.+++.|+.....+. ..++.+.- +..--|++-.-|+-
T Consensus 229 -----------d~~~-------~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~L 290 (452)
T PF01532_consen 229 -----------DEQY-------RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLAL 290 (452)
T ss_dssp -----------THHH-------HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHH
T ss_pred -----------chHH-------HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHH
Confidence 0011 12233445555555543211111 01111110 01111222223333
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe--cCC---C-------CCC-CCCcchH
Q 003553 521 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RNG---P-------SKA-PGFLDDY 587 (811)
Q Consensus 521 A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~--~~g---~-------~~~-~~~leDy 587 (811)
.++.+++ +.+++.|.++.+-.........+|.....+ ... . ... ......|
T Consensus 291 g~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 354 (452)
T PF01532_consen 291 GAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRY 354 (452)
T ss_dssp HHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B
T ss_pred hhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccc
Confidence 3344332 789999999998876554332245433331 110 0 000 0011122
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHH
Q 003553 588 ---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 664 (811)
Q Consensus 588 ---A~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~r 664 (811)
-.+|+.+.-+|++|||++|+++|-++++.+.+++.- .+||-...+-... . ...++..|| ..+++-|-=
T Consensus 355 ~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~~~----~-~~~~D~meS--f~laETlKY 425 (452)
T PF01532_consen 355 LLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVTSD----P-PQKDDRMES--FFLAETLKY 425 (452)
T ss_dssp -S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETTSS----S-SCBBS-B-C--HHHHTHHHH
T ss_pred cchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccCcC----C-cccCCCccc--eehHhhhHH
Confidence 378999999999999999999999999999998843 3455543211000 1 112233444 467777777
Q ss_pred HHHHhCC
Q 003553 665 LASIVAG 671 (811)
Q Consensus 665 L~~lt~~ 671 (811)
||-+..+
T Consensus 426 lYLlFsd 432 (452)
T PF01532_consen 426 LYLLFSD 432 (452)
T ss_dssp HHHHTSS
T ss_pred HHhhcCC
Confidence 8877764
No 113
>PLN02309 5'-adenylylsulfate reductase
Probab=95.92 E-value=0.012 Score=68.11 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=44.1
Q ss_pred HHHHHH---HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCC-CCccH
Q 003553 128 EEAFAE---ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-ERPDV 187 (811)
Q Consensus 128 ~~a~~~---Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~e-e~pdi 187 (811)
.+.++. .+.++|++||.|+++||+.|+.|+.. |. ++++.++. ++..++||.+ +..++
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~~~l 413 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQKEF 413 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcchHH
Confidence 444544 34689999999999999999999874 54 67877764 5889999998 54444
No 114
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.87 E-value=0.059 Score=62.58 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=105.1
Q ss_pred hhccHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecC-CCCCCC
Q 003553 507 IVSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRN-GPSKAP 581 (811)
Q Consensus 507 ltsWNal~I~ALa~A~~~~--~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~--~~~-g~~~~~ 581 (811)
+-.-+...+.+|+-||.+. +| +.+|+.|+++++.|...|.. .+|.-+.. .+. +.....
T Consensus 75 ~fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~ 137 (452)
T PF01532_consen 75 VFETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWP 137 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTC
T ss_pred hHHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCC
Confidence 3345688899999999999 76 78999999999999999944 35543322 222 111111
Q ss_pred ---CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-cCCCcccccC-C-CCCcccccccCCCCCCCCChH
Q 003553 582 ---GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD-REGGGYFNTT-G-EDPSVLLRVKEDHDGAEPSGN 655 (811)
Q Consensus 582 ---~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D-~~~Ggyf~t~-~-~~~~li~R~k~~~D~a~PS~N 655 (811)
..+.+.+-++.=+..|.++|||++|.+.|..+.+.+.+.-.. +..| .+-.. + ..+.... ......++
T Consensus 138 ~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~g-L~p~~id~~~g~~~~------~~~~~Ga~ 210 (452)
T PF01532_consen 138 GGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPG-LFPNFIDPSTGKWTS------SSISLGAG 210 (452)
T ss_dssp CGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTT-B-BSEEETTTS-BSS------TEE-SSTT
T ss_pred CCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcc-cCcceecCCcCcccc------cccccCCC
Confidence 234566677888899999999999999999999988762100 0122 22111 0 0111110 11122233
Q ss_pred H-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003553 656 S-VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 697 (811)
Q Consensus 656 s-v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 697 (811)
+ ..-+-|++.+.+++.. ++.|++.-++.++.+...+...|.
T Consensus 211 ~DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 211 GDSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp THHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred cchHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 3 4678899999999853 478888888888887777655433
No 115
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.86 E-value=0.0064 Score=67.01 Aligned_cols=249 Identities=16% Similarity=0.201 Sum_probs=142.0
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCcccccCcccccCCceeeecHHHHH
Q 003553 344 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 419 (811)
Q Consensus 344 LyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p---~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~ 419 (811)
||+ -|-++.+|.++++.++|+.|.+.+++.++.+.+.+... ..|+|. |.-|-. |...
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi~--~~l~--- 67 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGIA--YALS--- 67 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHHH--HHHH---
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHHH--HHHH---
Confidence 556 67889999999999999999999999999998876542 222322 111111 1110
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003553 420 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 499 (811)
Q Consensus 420 ~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~ 499 (811)
-+...+ -....+.+.++.+.+.+.........
T Consensus 68 --------------~~~~~~----------------------------------~~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 68 --------------YLSKRL----------------------------------GDEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp --------------HHCCCT----------------------------------CHHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred --------------HHHHhc----------------------------------cchHHHHHHHHHHHHHHHHhhhhccc
Confidence 010000 01122234445554444433222211
Q ss_pred CCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 003553 500 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 577 (811)
Q Consensus 500 P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~--~G~l~~~~~~g~ 577 (811)
.. .| ++.+- +=++..+...++.+++ +++++.+.+..+.|.+....-. .-.+...+. ..
T Consensus 100 ~~-~D-~l~G~-aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 ND-YD-LLSGL-AGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GG-CS-TTTSH-HHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred cc-ch-hhccc-HHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 11 12 22222 3335666667777655 6788888888888877664310 000101111 11
Q ss_pred CCCCCCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHH
Q 003553 578 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 656 (811)
Q Consensus 578 ~~~~~~leDyA~~i~aLL~LY-eaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Ns 656 (811)
....|+....+=.+.+|+.+| +.++++++++.+.++.+...+++...+ ++|......... .. -..--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDD-GGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGC-CT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCccc-CCCCCCCCcccc-----cc--ccccccCcH
Confidence 223588888999999999999 699999999999999999988875433 445543321100 00 113345667
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003553 657 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 690 (811)
Q Consensus 657 v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 690 (811)
=++..+.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 788888899999864 7888888888777655
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=95.86 E-value=0.006 Score=70.55 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh--cccEEEEEcCCCCccHHHHH
Q 003553 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~A-k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln--~~fv~vkvD~ee~pdi~~~y 191 (811)
.+.|+.. .+++|+|||.|+++||++|+.|+. +|+ ++++.+. .+++.+++|.+.++.+.+.|
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~ 427 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF 427 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC
Confidence 3455555 788999999999999999999976 455 4444443 46888999998877654433
No 117
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.67 E-value=0.013 Score=54.72 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHH
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVD 188 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~ 188 (811)
.+..+...+|+++|.|+++||..|+.+.. .+.++.++ .++.|.+|.+..+.+.
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~------~l~~~~~~~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSP------TVNQLAADYPVVSVALRSGDDGAVA 65 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhCh------HHHHHHhhCCEEEEEccCCCHHHHH
Confidence 34555566799999999999999999843 33333332 4566666654344443
No 118
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.65 E-value=0.023 Score=53.55 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcc-cEEEEEcCC
Q 003553 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDRE 182 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~-fv~vkvD~e 182 (811)
+.+..+.-+||+++|.|+++||+.|+.+.. ++.++-++. +..|-|+.+
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYK 64 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECC
Confidence 345555556999999999999999999764 444433332 666666654
No 119
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.51 E-value=0.019 Score=58.19 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=34.5
Q ss_pred CcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 139 Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++|+|.|+++||..|+.|.. .+ .++++... +...+|||.++. ++...|
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~-~l--~~LA~~~~-~vkF~kVd~d~~-~l~~~f 131 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNS-SL--LCLAAEYP-AVKFCKIRASAT-GASDEF 131 (175)
T ss_pred cEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CeEEEEEeccch-hhHHhC
Confidence 59999999999999999986 22 23444332 467788888865 555554
No 120
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.48 E-value=0.022 Score=59.35 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=45.1
Q ss_pred hHHHHHHHhhcCCcEEEE-EcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~-i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
.++..+..++.++||.|. |+++||++|+.|.. .+ .+++.. +.....++||.++.|++.+.|+
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~~~ 183 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEKYG 183 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHHhC
Confidence 355667777788898777 78999999999874 22 223332 3455667899999999988874
No 121
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.47 E-value=0.02 Score=54.55 Aligned_cols=63 Identities=22% Similarity=0.090 Sum_probs=43.8
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCchh--hH--HhhhhcCCCHHHHHHH-hcccEEEEEcCCCCccHHHHHH
Q 003553 128 EEAFAEA-RKRDVPIFLSIGYSTCHW--CH--VMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 128 ~~a~~~A-k~~~Kpi~l~i~~~~C~w--C~--~me~e~f~d~eva~~l-n~~fv~vkvD~ee~pdi~~~y~ 192 (811)
++-|++. ++.++||+++|.+.||+. |+ .|+... ....+++| ......+|||.++.|++.+.|.
T Consensus 16 ~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~ 84 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSKKDAKVAKKLG 84 (120)
T ss_pred hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC
Confidence 3455544 455568888999999988 99 554211 12233333 4578999999999999999883
No 122
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.29 E-value=0.024 Score=54.19 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCc
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERP 185 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~p 185 (811)
.+..+.-.||+|+|.|+++||..|+.+..+ ++ ++.+.+.+ .+..|-|+.++.+
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~-l~--~l~~~~~~~~~~v~vi~Vs~d~~~ 64 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKEEGKNFEIVFVSRDRSE 64 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHHHH-HH--HHHHHHhhcCCCeEEEEEecCCCH
Confidence 344555569999999999999999986542 11 23333333 4555666666554
No 123
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.28 E-value=0.03 Score=55.26 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=33.7
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--------ccEEEEEcCCCCc
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERP 185 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--------~fv~vkvD~ee~p 185 (811)
+.=+||+|+|.|+|+||+.|+..... +. ++.+.+++ .|..|-|+.++.+
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P~-L~--~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAPK-LK--DFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHH-HH--HHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 44469999999999999999986531 11 22223332 4888888877654
No 124
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=95.28 E-value=0.84 Score=51.57 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 591 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 591 (811)
+=++.++..+++++++ +.+.+.|.++...+...... .+ .....++....+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 4456677788888887 78999999988776643211 00 012345666778889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003553 592 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 622 (811)
Q Consensus 592 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 622 (811)
..|+.+|+.|++++|++.|..+.+.+.+.+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998764
No 125
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.26 E-value=0.022 Score=49.19 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
+.-|+++||++|+.|.. .=.++++.++..+..++||.++.|++.+.|+
T Consensus 3 v~~f~~~~C~~C~~~~~---~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~ 50 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR---VVEEVAKEMGDAVEVEYINVMENPQKAMEYG 50 (82)
T ss_pred EEEEECCCCcchHHHHH---HHHHHHHHhcCceEEEEEeCccCHHHHHHcC
Confidence 45678899999999986 2233444455567788999999998877663
No 126
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.15 E-value=0.03 Score=50.54 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++|++|.|.++||..|+.|.. .| .+||+.+...+..++||.++.|++.+.|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~--~~vA~~~~~~v~f~~vd~~~~~~~~~~~ 62 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RF--KEVAKKFKGKLLFVVVDADDFGRHLEYF 62 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHhhHHHHHHc
Confidence 899999999999999999987 23 5888888888999999999988876655
No 127
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.15 E-value=0.032 Score=56.77 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=32.8
Q ss_pred hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCcc
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD 186 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pd 186 (811)
..||+|+|.|+++||+.|+.+.. .+.++-++++..|-|+.++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHH
Confidence 36999999999999999998764 3334334567777777655443
No 128
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.017 Score=60.89 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--ccEEEEEcCCCCccHHHH
Q 003553 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKV 190 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--~fv~vkvD~ee~pdi~~~ 190 (811)
+.++..+|.|+|+|+++||..|+...- .|+ .+-|+ .+|..|||+++--....-
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP-~Fs-----~lankYp~aVFlkVdVd~c~~taa~ 69 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAP-IFS-----DLANKYPGAVFLKVDVDECRGTAAT 69 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhh-HHH-----HhhhhCcccEEEEEeHHHhhchhhh
Confidence 456778899999999999999999874 443 33343 689999999885555443
No 129
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.11 E-value=0.02 Score=54.38 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.4
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhh
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~ 158 (811)
+.-.||+|+|.|+++||+.|+.+..
T Consensus 14 ~~~~gk~vll~Fwa~wC~~C~~~~p 38 (131)
T cd03009 14 SSLEGKTVGLYFSASWCPPCRAFTP 38 (131)
T ss_pred HHhCCcEEEEEEECCCChHHHHHhH
Confidence 3446899999999999999999754
No 130
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.03 E-value=0.34 Score=53.96 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 003553 515 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 594 (811)
Q Consensus 515 I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aL 594 (811)
+.+|..+++++++ +++.+.|+++.+.+.+.-.-..+.++.| | .+=.+.+|
T Consensus 230 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G----------~~G~~~~l 279 (343)
T cd04794 230 VYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----G----------IAGNAYAF 279 (343)
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----C----------ccchHHHH
Confidence 4467788888887 6899999998887653211101112222 2 23347899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003553 595 LDLYEFGSGTKWLVWAIELQNTQDELFL 622 (811)
Q Consensus 595 L~LYeaTgd~~yL~~A~~L~~~~~~~F~ 622 (811)
+.+|+.|++++|+++|..+++.+.+...
T Consensus 280 L~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 280 LLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999887653
No 131
>PLN02175 endoglucanase
Probab=95.01 E-value=0.58 Score=54.70 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFL 590 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~~~~~~leDyA~~ 590 (811)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+..+...+ .+........+=.+
T Consensus 172 ae~AAALAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~DEl 236 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKDEL 236 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccHHH
Confidence 77889999999999862 1112 1467999999999998742 2211110000 01111111122456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 003553 591 ISGLLDLYEFGSGTKWLVWAIE 612 (811)
Q Consensus 591 i~aLL~LYeaTgd~~yL~~A~~ 612 (811)
++|.+.||.+|||+.|++.+..
T Consensus 237 ~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 237 MWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 8899999999999999976643
No 132
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.95 E-value=8.2 Score=46.99 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCcEEEEEc-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 323 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 323 gGGF~RYsv-D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~--d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
.||+- |+. +..|.+. -|-|..+.++..+....+ ++.+.++++++++||++ +++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~------d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDS------DDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCc------CchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56664 553 3444443 268889999888776653 56788999999999996 7899999854
No 133
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.91 E-value=3.3 Score=50.19 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=39.8
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec
Q 003553 508 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR 574 (811)
Q Consensus 508 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~ 574 (811)
+.=++++..||..|.++...-.+ + ...+.|.+.|.++.+.+.+++|+++.|.|.+.+.
T Consensus 413 ~~t~a~~~aAL~~aa~lA~~lGd------~---~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~ 470 (616)
T TIGR01577 413 TYTASAVYGGLDAAAAVADKLGE------K---RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIK 470 (616)
T ss_pred CccHHHHHHHHHHHHHHHHHcCC------h---HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeec
Confidence 33467888888887766432100 0 0125789999999999999999987677777654
No 134
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=94.75 E-value=0.036 Score=49.57 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcCCCC
Q 003553 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER 184 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ee~ 184 (811)
+.+..++..+|+++|.|+++||..|+.+.. .+. ++...+. .++..+.|+.+..
T Consensus 10 ~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~--~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 10 KPVSLSDLKGKVVLVNFWASWCPPCRAEMP-ELE--ALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CEeehHHcCCCEEEEEeecccChhHHHHhH-HHH--HHHHHhCCCCeEEEEEECCCC
Confidence 345566666999999999999999997543 221 1333332 3456666666554
No 135
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=94.74 E-value=0.055 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=27.4
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEE
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkv 179 (811)
++||++|.|+++||+.|+.+... ++ ++.+.....+..|.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEE
Confidence 58999999999999999997643 32 244444444444433
No 136
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.63 E-value=0.061 Score=47.90 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh--cccEEEEEcCCC
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE 183 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln--~~fv~vkvD~ee 183 (811)
||+++|.|+++||..|+..-... .++.+.+. +.|..|-|..++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SS
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCC
Confidence 79999999999999999865432 23555566 566666665553
No 137
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.37 Score=51.53 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=97.8
Q ss_pred hhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhcc
Q 003553 493 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHLY 562 (811)
Q Consensus 493 ~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~----------~~~~yle~A~~~~~~l~~~l~ 562 (811)
.|..|..|-+.+.|.+.||-.|-.++..=.+- --||.|.-|- ...++|+.|-++++|+.+.+.
T Consensus 111 vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~-------~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 111 VRRRRALPKLTNQFVEGWVDEDGGGIPWRKQD-------QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred eeccccchhHHHhhhhccccccCCcccccccc-------eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhcc
Confidence 55667778888999999998776655432211 1123333220 113599999999999999999
Q ss_pred ccCCCeEEEE---ecCCCCCC-CCCcchHHHHH--HHHHHHHH-HcCCHHHHHHHHHHHHHHHHHccccCCCcccccC-C
Q 003553 563 DEQTHRLQHS---FRNGPSKA-PGFLDDYAFLI--SGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT-G 634 (811)
Q Consensus 563 d~~~G~l~~~---~~~g~~~~-~~~leDyA~~i--~aLL~LYe-aTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~-~ 634 (811)
|++ |..+.. -.+|.... ..+.+-+...| ++-|+||+ .+...+|+..+-++.....++... -|-+-+.. +
T Consensus 184 d~D-GlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~gg 260 (377)
T COG4833 184 DPD-GLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAGG 260 (377)
T ss_pred CCC-cchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCCC
Confidence 964 544322 12343322 24444444444 48899999 888899999999999999988742 23333322 2
Q ss_pred CCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003553 635 EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 671 (811)
Q Consensus 635 ~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 671 (811)
.|+.++ -++.+.-|..++.-+.+
T Consensus 261 GDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 261 GDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred Cccchh--------------hhHHHHHHHHHHHhcCC
Confidence 233221 25777777777776654
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.57 E-value=0.049 Score=45.49 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=32.4
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
++.|+++||++|+.+++ .+ .++++ .+.++...++|.++.|++.+.|
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~~l~~~~ 48 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFPDLADEY 48 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCHhHHHHc
Confidence 35678999999999875 22 23333 2345777888998888876665
No 139
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.57 E-value=0.11 Score=50.57 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=52.8
Q ss_pred hHHHHHHH----hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCC
Q 003553 127 GEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (811)
Q Consensus 127 ~~~a~~~A----k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee 183 (811)
.++|++.| |++.|+++|..+.+--.-|...=++++.+++|.+++|++||.-=-|...
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~ 66 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTK 66 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccc
Confidence 48999999 9999999999999988888888889999999999999999999888865
No 140
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.20 E-value=0.066 Score=61.27 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=39.8
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCC
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREER 184 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~ 184 (811)
....+++|+|.|+++||..|+.|.... .++++.++. .+..+++|.+.+
T Consensus 360 v~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 360 VLDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred hccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCC
Confidence 346799999999999999999998743 557888876 688899998765
No 141
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.60 E-value=0.12 Score=46.54 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHhhcCCcEEE-EEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 132 AEARKRDVPIFL-SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 132 ~~Ak~~~Kpi~l-~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
+.+++-++||=| .|..+||+||..+.+-. +++++ .+.++-..++|.++.|++...|+
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~~~~e~a~~~~ 62 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGALFQDEVEERG 62 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhHhCHHHHHHcC
Confidence 445567777544 45669999999987633 66665 44568888899999999988884
No 142
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=93.51 E-value=0.11 Score=56.30 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred hhcCCcEEEEEcccCchhhHHhhh
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~ 158 (811)
.-.+|+++|.|+++||..|+.|..
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P 186 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAP 186 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhH
Confidence 335899999999999999999764
No 143
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=93.06 E-value=0.36 Score=55.58 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=74.9
Q ss_pred HHHHHcCCCHHHHHHH----HHHHHHHHHhhhcCCCCCCC-Ccchhhcc--------------------HHHHHHHHHHH
Q 003553 467 ASASKLGMPLEKYLNI----LGECRRKLFDVRSKRPRPHL-DDKVIVSW--------------------NGLVISSFARA 521 (811)
Q Consensus 467 ~~a~~~g~~~~~l~~~----l~~~r~~L~~~R~~R~~P~~-DdKiltsW--------------------Nal~I~ALa~A 521 (811)
++++++|...+++.+- |+...+.-+...++-.+|.+ |-+-||.. -.-.+.++++|
T Consensus 317 ~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vra 396 (557)
T PF06917_consen 317 ELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVRA 396 (557)
T ss_dssp HHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchhHhHHHHHH
Confidence 4667777665555442 33344444444455555633 22322221 12346799999
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC-CCCCCcchHHHHHHHHHHHHH
Q 003553 522 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS-KAPGFLDDYAFLISGLLDLYE 599 (811)
Q Consensus 522 ~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~-~~~~~leDyA~~i~aLL~LYe 599 (811)
+++.+| +...+.+..++. ++-- |-+- ...+ .+ .....-.+-.+++.|+|+||+
T Consensus 397 ~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig--~~~~~~~~~~~~~~~~sp~~L~allEL~~ 451 (557)
T PF06917_consen 397 YRLSRD----------------PELWDLARTMAH----HFGL---GDIG--NAAGKEPRVNMQTDNASPYLLFALLELYQ 451 (557)
T ss_dssp HHHS------------------HHHHHHHHHHHH----HTT----EE-T--TBTTBS-EE-TT-----HHHHHHHHHHHH
T ss_pred HHcCCC----------------HHHHHHHHHHHh----hcCc---cccc--CccccccccccCCCCCCHHHHHHHHHHHH
Confidence 999887 667777777764 3310 1110 0111 11 112333456788999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 003553 600 FGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 632 (811)
Q Consensus 600 aTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 632 (811)
+|++++|++.|.++.+.+.++-+. + |||-.
T Consensus 452 atq~~~~l~lA~~~g~~l~~~~~~--~-GlF~~ 481 (557)
T PF06917_consen 452 ATQDARYLELADQVGENLFEQHFH--R-GLFVA 481 (557)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHEE--T-TEE-S
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcc--C-ceecC
Confidence 999999999999999998887664 3 45543
No 144
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.54 E-value=0.099 Score=40.57 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=33.9
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK 189 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~ 189 (811)
++.|+.+||.+|+.+..... +- +..+.++..+.+|.++.++...
T Consensus 1 l~~~~~~~c~~c~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLA-EL---ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred CEEEECCCChhHHhhhhHHH-HH---HhhCCCcEEEEEEcCCChHHhh
Confidence 46788999999999876333 22 5677889999999988877654
No 145
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.30 E-value=0.27 Score=43.08 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=36.7
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCC-CCccHHHHHHH
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMT 193 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~e-e~pdi~~~y~~ 193 (811)
++++++.|+++||+.|+.+ .|.+.++..+ ....+.+|.. ..+++...|..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV 85 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh
Confidence 9999999999999999998 4555554444 3567777775 56666666643
No 146
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=92.30 E-value=0.14 Score=44.53 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=25.8
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEc
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD 180 (811)
|.|+++||++|+.|.. .=+++++-++..+..++||
T Consensus 3 i~~~a~~C~~C~~~~~---~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 3 IQIYGTGCANCQMTEK---NVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEECCCCcCHHHHHH---HHHHHHHHcCCCeEEEEeC
Confidence 6788999999999975 2244555566567777887
No 147
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=92.06 E-value=0.19 Score=47.78 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=42.1
Q ss_pred hHHHHHHHhhcCCcEEEEEcc--cCch---hhHHhhhhcCCCHHHHHHHhcccEEEEEcCC-----CCccHHHHH
Q 003553 127 GEEAFAEARKRDVPIFLSIGY--STCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~--~~C~---wC~~me~e~f~d~eva~~ln~~fv~vkvD~e-----e~pdi~~~y 191 (811)
.+..|+...++++.+||.|++ +||. -|+.+..+..+..+ ..+..+||.+ +..++.+.|
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 466788999999999999999 7777 77777654433211 3788899993 456666666
No 148
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=92.02 E-value=18 Score=39.72 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003553 300 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 379 (811)
Q Consensus 300 ~~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~ 379 (811)
+++.+++..-..++.. |-+-+|||.- |. +-+=-....|..+.++.+|-+.. +.-..+.+++++||++
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------WK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------CC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4677888888887765 5557899943 31 11334567999999999997754 2335789999999998
Q ss_pred hccCCCCceee
Q 003553 380 DMIGPGGEIFS 390 (811)
Q Consensus 380 ~m~~p~Ggfys 390 (811)
. +.++|+|-.
T Consensus 115 ~-Q~~dG~f~e 124 (297)
T cd02896 115 N-QKPDGSFQE 124 (297)
T ss_pred c-CCCCCeeCC
Confidence 6 888998853
No 149
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=91.96 E-value=28 Score=42.47 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 003553 245 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 324 (811)
Q Consensus 245 ~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgG 324 (811)
+...+++++.+.|... |...||+|.. |.+..+..|--+.. |. ...+. +.+.++++.. =+..+.+|
T Consensus 233 lr~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~----~~~~l~~l~~-~~~~~~~g 297 (634)
T cd02892 233 LRRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPA----FKRHLERIDD-FLWLGPEG 297 (634)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHH----HHHHHHHHHh-cEEEecCC
Confidence 3456777888777655 7789999884 33433333222221 11 01222 3333444332 12223366
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCc
Q 003553 325 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGE 387 (811)
Q Consensus 325 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~-~p~Gg 387 (811)
+++. ..+ .--++|-|+.+.++.++... +.+....+++++||.+.=. ++.|.
T Consensus 298 ~~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~gd 349 (634)
T cd02892 298 MKMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPGD 349 (634)
T ss_pred cEEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCCc
Confidence 6643 111 11278999999999987432 3677889999999987432 44453
No 150
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=91.92 E-value=34 Score=41.77 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 344 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 344 LyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
+-|.|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 380 ~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 380 VDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred chhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 34788899988776 334567788999999999998 7899999843
No 151
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=91.84 E-value=0.23 Score=50.84 Aligned_cols=69 Identities=6% Similarity=0.017 Sum_probs=50.2
Q ss_pred cCCCCccccChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEE------EEEcCCCCccHHHH
Q 003553 117 AHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKV 190 (811)
Q Consensus 117 ~~~~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~------vkvD~ee~pdi~~~ 190 (811)
..+.+.-.+|..+.+. ||..+|.|.|+||..|+. +.|-+.++=.++|.. +-||.++.+.....
T Consensus 43 ~~~~~~y~~~~~~~l~-----GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~ 111 (184)
T TIGR01626 43 SGKDTVYQPWGSAELA-----GKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGM 111 (184)
T ss_pred cCCcccceeccHHHcC-----CCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHH
Confidence 3477999999665543 999999999999999998 567777776668877 78888765543333
Q ss_pred -HHHHHH
Q 003553 191 -YMTYVQ 196 (811)
Q Consensus 191 -y~~~~q 196 (811)
..++++
T Consensus 112 fVk~fie 118 (184)
T TIGR01626 112 FVKSSAK 118 (184)
T ss_pred HHHHHHH
Confidence 333433
No 152
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=91.80 E-value=14 Score=41.86 Aligned_cols=113 Identities=14% Similarity=0.045 Sum_probs=69.5
Q ss_pred HHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCcEEEEEc---CCCCCCCC---------CchhHH
Q 003553 281 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHVPH---------FEKMLY 345 (811)
Q Consensus 281 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi---~D~vgGGF~RYsv---D~~W~vPH---------FEKMLy 345 (811)
..+-.|...++| ...-++....+...|+.+..|.- +-+...||...-. -..|..-. --|-.-
T Consensus 91 ~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vE 167 (370)
T PF06202_consen 91 IALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVE 167 (370)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchH
Confidence 344455555443 11224555667778888888644 2222477876433 35675422 224444
Q ss_pred HHHHHHHHHHHHHHccC---C---hHHHHHHHHHHHHHHHhccCCCCceee-eccCCc
Q 003553 346 DQGQLANVYLDAFSLTK---D---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADS 396 (811)
Q Consensus 346 DNA~Ll~~ya~Ay~~t~---d---~~y~~~A~~t~~fl~~~m~~p~Ggfys-a~DADs 396 (811)
-||+...++..+..+.. + ..|++.|+++-+=+.+.||++++|+|. ++|.+.
T Consensus 168 Iqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~ 225 (370)
T PF06202_consen 168 IQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDK 225 (370)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence 48888777655444433 3 478899999998888999999887776 666543
No 153
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.79 E-value=0.16 Score=52.89 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=37.9
Q ss_pred hcCCcEEEEEc--ccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHH
Q 003553 136 KRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 136 ~~~Kpi~l~i~--~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~~~y~ 192 (811)
+.++.|++.+. ++||.+|+.|.. .+ +++++...+ .++.|+||.++.|++.+.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p-~l--~~la~~~~~~~i~~v~vd~~~~~~l~~~~~ 74 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQ-LL--EELSEVSPKLKLEIYDFDTPEDKEEAEKYG 74 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHH-HH--HHHHhhCCCceEEEEecCCcccHHHHHHcC
Confidence 45666666444 499999999986 22 335554433 35678888889999988884
No 154
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=91.73 E-value=0.23 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.4
Q ss_pred HhhcCCcEEEEEcccCchhhHHhh
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVME 157 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me 157 (811)
....+++.+|.|+++||.+|+.+.
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~ 69 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFA 69 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHH
Confidence 334467779999999999999964
No 155
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=91.72 E-value=0.23 Score=58.51 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.6
Q ss_pred cCCcEEEEEcccCchhhHHhhh
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~ 158 (811)
+||||+|.|+++||++|+.+..
T Consensus 55 kGKpVvV~FWATWCppCk~emP 76 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELG 76 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHH
Confidence 7999999999999999999765
No 156
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.19 Score=58.54 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=56.7
Q ss_pred cccccCCChhhhcccCCCCccccC------hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc--cc
Q 003553 103 NRLAAEHSPYLLQHAHNPVDWFAW------GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WF 174 (811)
Q Consensus 103 NrL~~e~SpYL~qH~~~~v~W~~~------~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~--~f 174 (811)
..|...-+|||... .-|=+|..- ++.--+.+..++|-|||.|+++||.-|+.++. .=+++|+.+.+ +-
T Consensus 344 ~~l~Gk~~p~~kSq-piPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP---~~eeLAe~~~~~~~v 419 (493)
T KOG0190|consen 344 DFLDGKVKPHLKSQ-PIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAP---IYEELAEKYKDDENV 419 (493)
T ss_pred HHhcCccccccccC-CCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhh---HHHHHHHHhcCCCCc
Confidence 46777888888753 223344311 23345778999999999999999999999985 22456666654 67
Q ss_pred EEEEEcCC--CCcc
Q 003553 175 VSIKVDRE--ERPD 186 (811)
Q Consensus 175 v~vkvD~e--e~pd 186 (811)
|..|+|.+ +.|.
T Consensus 420 viAKmDaTaNd~~~ 433 (493)
T KOG0190|consen 420 VIAKMDATANDVPS 433 (493)
T ss_pred EEEEeccccccCcc
Confidence 99999985 4565
No 157
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.62 E-value=8.9 Score=45.13 Aligned_cols=285 Identities=17% Similarity=0.139 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhh
Q 003553 346 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 425 (811)
Q Consensus 346 DNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~ 425 (811)
.|=+.+.-|.-||-++|++.|+..|.++.+=|+--+.-|.|-=++.++..|. -+.=|.|...-.. +|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG---------~~~n~~wasgg~S-IL--- 329 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSG---------DADNYGWASGGSS-IL--- 329 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccC---------ccCCcccccCcch-Hh---
Confidence 3667888888899999999999999999999999888888877777776551 1334555521000 11
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhc-CCCCC-CCC
Q 003553 426 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRS-KRPRP-HLD 503 (811)
Q Consensus 426 ~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~-~R~~P-~~D 503 (811)
++.|. ||+.- .-+.+..|.+ ...++...+|+-|...-. +-..| ++-
T Consensus 330 ----------aE~gt------------------lhlef--~~LS~ltg~P--~~~ekv~~IRk~l~k~ekP~GLypnYin 377 (625)
T KOG2204|consen 330 ----------AEFGT------------------LHLEF--SYLSKLTGNP--TFAEKVVKIRKVLNKSEKPHGLYPNYIN 377 (625)
T ss_pred ----------hhcCc------------------eeeeh--HHhhhccCCc--hHHHHHHHHHHHHHhhcCCCCCCccccc
Confidence 11121 11110 0122333433 233444444444432211 11111 111
Q ss_pred cchhhccHHHHHH----------HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE
Q 003553 504 DKVIVSWNGLVIS----------SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH 571 (811)
Q Consensus 504 dKiltsWNal~I~----------ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~--G~l~~ 571 (811)
..-. -|--.+.+ =|.++.-..+. .+.++..+=.++...|.+++..... |..|-
T Consensus 378 P~sg-~wgq~~tslg~lgDSfyeyllK~wl~s~k--------------Td~eak~my~~am~Ai~~~li~~S~~s~ltyi 442 (625)
T KOG2204|consen 378 PSSG-EWGQHHTSLGALGDSFYEYLLKAWLQSDK--------------TDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYI 442 (625)
T ss_pred CCCC-chhhHHhHHhhhhhhHHHHHHHHHhhcCC--------------cchHHHHhHHHHHHHHHhhheeccCCCCeEEE
Confidence 1111 23333222 23333333332 2244555555666666666654333 33343
Q ss_pred E-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCC----CcccccCCCCCcccc
Q 003553 572 S-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG----GGYFNTTGEDPSVLL 641 (811)
Q Consensus 572 ~-~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~----Ggyf~t~~~~~~li~ 641 (811)
+ +.+|.. .--..-.|.+.-|+..|....++. .|++.+.++...+-+-|....+ +.|+++.. ++...+
T Consensus 443 ~e~~~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~~~ 519 (625)
T KOG2204|consen 443 SEWNGGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAFAV 519 (625)
T ss_pred EecCCCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchhhh
Confidence 3 454432 111233577888899998888774 6999999999999887754322 23444432 233333
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 003553 642 RVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 701 (811)
Q Consensus 642 R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 701 (811)
|..+.+ -+-- ...++.+.-|.++|++ +.||+-+-+.+..+.. ..+...|+..
T Consensus 520 r~~Esy--yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek-~cr~~~G~~g 571 (625)
T KOG2204|consen 520 RKVESY--YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEK-YCRVAKGYSG 571 (625)
T ss_pred hcccce--eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHH-hcccccchhh
Confidence 332211 1111 2466778889999996 7899999888765433 2233444443
No 158
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=90.54 E-value=7.1 Score=48.29 Aligned_cols=140 Identities=20% Similarity=0.304 Sum_probs=94.9
Q ss_pred chhhccHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 003553 505 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 582 (811)
Q Consensus 505 KiltsWNal~--I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~ 582 (811)
+-+-+.+|+. +.||..-+.+++| ......|.+....|...... ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 4455566665 6788888988887 45566777777644332211 11234
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHH
Q 003553 583 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 662 (811)
Q Consensus 583 ~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L 662 (811)
+..+-|=++..|+.+|+.|.++++++.|..+.+.+.+.....++ .+++.+-. --|++-.+-.|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gf--------shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLGF--------SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceeccc--------ccchHHHHHHH
Confidence 55556888999999999999999999999999998876643222 11222111 12556677889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003553 663 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 694 (811)
Q Consensus 663 ~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 694 (811)
+.|+.+|++ +.+.+.+++.+..=..+...
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHH
Confidence 999999996 78888888877664444433
No 159
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=90.39 E-value=0.42 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.7
Q ss_pred hhcCCcEEEEEcccCchhhHHhhh
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~ 158 (811)
...|||++|.|+++||+.|+.+..
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~lp 94 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLFP 94 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHHH
Confidence 346899999999999999998754
No 160
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=90.37 E-value=0.42 Score=46.02 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=34.9
Q ss_pred HHHHhhcCCcEEEEEccc-CchhhHHhhhhcCCCHHHHHH-HhcccEEEEEcCCCCccH
Q 003553 131 FAEARKRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKL-LNDWFVSIKVDREERPDV 187 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~-~C~wC~~me~e~f~d~eva~~-ln~~fv~vkvD~ee~pdi 187 (811)
+..+.-.||+++|.|+++ ||+.|+.... .=.++.+. -++.+..|-|..+..+.+
T Consensus 21 ~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p---~l~~l~~~~~~~~v~~v~v~~~~~~~~ 76 (146)
T PF08534_consen 21 VSLSDFKGKPVVVNFWASAWCPPCRKELP---YLNELQEKYKDKGVDVVGVSSDDDPPV 76 (146)
T ss_dssp EEGGGGTTSEEEEEEESTTTSHHHHHHHH---HHHHHHHHHHTTTCEEEEEEESSSHHH
T ss_pred ecHHHhCCCeEEEEEEccCCCCcchhhhh---hHHhhhhhhccCceEEEEecccCCHHH
Confidence 344556799999999999 9999998654 22233333 344465556655555443
No 161
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=90.17 E-value=0.48 Score=46.88 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCc
Q 003553 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP 185 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~p 185 (811)
..+.-++|+++|.|+++||+.|+.... .|. ++++.+++ .+..|-|+.++.+
T Consensus 55 ~l~~~~~k~~~l~f~a~~C~~C~~~~~-~l~--~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 55 ELKDLKGKGVFLNFWGTWCKPCEKEMP-YMN--ELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred eHHHcCCCEEEEEEECCcCHHHHHHHH-HHH--HHHHHhhcCCeEEEEEEcCCCH
Confidence 444446899999999999999987542 222 23333332 3555556555433
No 162
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=89.93 E-value=6.6 Score=47.57 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcch
Q 003553 511 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDD 586 (811)
Q Consensus 511 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~--~-~~~leD 586 (811)
.++++.||..++ +.+.|++..+|+.+.... +|.+++. +-+|.+. . ...+|.
T Consensus 300 ~~~~a~Al~~~G-----------------------~~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~ 354 (616)
T TIGR01577 300 ASYIATALDRAG-----------------------YHDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDE 354 (616)
T ss_pred HHHHHHHHHHCC-----------------------CHHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccc
Confidence 367788887775 346788889999887643 4665665 4566554 2 456677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---cccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003553 587 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF---LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 663 (811)
Q Consensus 587 yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F---~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~ 663 (811)
++..+.++..++..|+|..+++.--...+.+.+.. +++ + ... ++.. .++...+..+..++....+|.
T Consensus 355 ~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~-l~~---~~~~----lWEer~G~~~~t~a~~~aAL~ 424 (616)
T TIGR01577 355 TGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP--E-TPL---PCRD----LWEEREGVFTYTASAVYGGLD 424 (616)
T ss_pred hhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC--C-CCC---CCCc----cceecCCccCccHHHHHHHHH
Confidence 99999999999999999887655443344333332 222 1 111 1111 112223456677776666665
Q ss_pred H---HHHHhCCCC-chHHHHHHHHHHHHHHH
Q 003553 664 R---LASIVAGSK-SDYYRQNAEHSLAVFET 690 (811)
Q Consensus 664 r---L~~lt~~~~-~~~y~~~A~~~l~~~~~ 690 (811)
+ |+...|+.. ...|++.|+++-+.+..
T Consensus 425 ~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~ 455 (616)
T TIGR01577 425 AAAAVADKLGEKRLAQNWKKAAEFIKRAVEE 455 (616)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 4 455455421 14566666665555443
No 163
>PTZ00062 glutaredoxin; Provisional
Probab=89.53 E-value=0.66 Score=48.35 Aligned_cols=51 Identities=8% Similarity=-0.073 Sum_probs=34.6
Q ss_pred HHHHHHHhhcC-CcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCC
Q 003553 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (811)
Q Consensus 128 ~~a~~~Ak~~~-Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~e 182 (811)
.+-++...+.+ ..+++.|+++||+.|+.|.. ++ +++++-. .++..++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl--~~l~~~~-~~~~F~~V~~d 57 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VC--NALVEDF-PSLEFYVVNLA 57 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HH--HHHHHHC-CCcEEEEEccc
Confidence 34555555544 77899999999999999975 21 2222211 35788888887
No 164
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.41 E-value=0.43 Score=49.22 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCC
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee 183 (811)
+++|+|.|+++||..|+.|.. .+ .++|+... ....+|||.+.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l--~~LA~k~~-~vkFvkI~ad~ 143 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HL--SELARKFP-DTKFVKIISTQ 143 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CCEEEEEEhHH
Confidence 469999999999999999986 22 33444332 34556777653
No 165
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.53 E-value=3.6 Score=48.26 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHH------
Q 003553 588 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN------ 661 (811)
Q Consensus 588 A~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~------ 661 (811)
--++-||+.+|-.|||+-|++.|.++.+.++..|--|.+--+=.+....+. .+.. -++. .+.|+.++.
T Consensus 265 irF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~--~~n~---~was-gg~SILaE~gtlhle 338 (625)
T KOG2204|consen 265 IRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGD--ADNY---GWAS-GGSSILAEFGTLHLE 338 (625)
T ss_pred eeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCc--cCCc---cccc-CcchHhhhcCceeee
Confidence 345779999999999999999999999999998854432112111110000 1111 1111 123455444
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003553 662 LVRLASIVAGSKSDYYRQNAEHSLAVFE 689 (811)
Q Consensus 662 L~rL~~lt~~~~~~~y~~~A~~~l~~~~ 689 (811)
+.-|+.++|+ +.|.++...|-+.+-
T Consensus 339 f~~LS~ltg~---P~~~ekv~~IRk~l~ 363 (625)
T KOG2204|consen 339 FSYLSKLTGN---PTFAEKVVKIRKVLN 363 (625)
T ss_pred hHHhhhccCC---chHHHHHHHHHHHHH
Confidence 6678999986 889999988776653
No 166
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=88.17 E-value=2 Score=47.25 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=86.3
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcchHH
Q 003553 512 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDDYA 588 (811)
Q Consensus 512 al~I~ALa~A~-~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~leDyA 588 (811)
+=++.+|+.++ +.+++ +++.+.++++.+++.++....+++ +.. .+..... ..+....-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPD-NRNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---S-ECTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCC-CCCccccccccccccCcH
Confidence 44678888888 57776 789999999999999988543334 222 1211100 345556667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHH
Q 003553 589 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 668 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 668 (811)
=.+.+++.+++..+++.+.+.+.++.+.+.+.-. +.. +...=-|.+=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7788999999999999999999998888766310 010 112233566677789999999
Q ss_pred hCCCCchHHHHHHHHHHHHH
Q 003553 669 VAGSKSDYYRQNAEHSLAVF 688 (811)
Q Consensus 669 t~~~~~~~y~~~A~~~l~~~ 688 (811)
+++ +.|.+.+++++..+
T Consensus 290 ~~~---~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKL 306 (355)
T ss_dssp H-----HCCHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHH
Confidence 985 66888888775554
No 167
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=88.11 E-value=0.55 Score=44.31 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhh
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVME 157 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me 157 (811)
.+..+.-.||+++|.|+++||..|....
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~ 42 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTL 42 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHH
Confidence 3455555789999999999999999754
No 168
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=87.63 E-value=0.67 Score=50.68 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003553 349 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 389 (811)
Q Consensus 349 ~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfy 389 (811)
.-+..++++|+.++++.|++.+.++++||+. |+.|+|||-
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 3566788999999999999999999999997 889999984
No 169
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=87.53 E-value=57 Score=37.56 Aligned_cols=304 Identities=16% Similarity=0.203 Sum_probs=166.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCccccc-----CcccccCC
Q 003553 334 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETE-----GATRKKEG 408 (811)
Q Consensus 334 ~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~DADs~~~~-----~~~~~~EG 408 (811)
+=.|--||-.+- ++.-+.-||-++|+..|++.|.+--+=|+.-+..|.+-=||.+.-++.... ++.-.-|=
T Consensus 168 ~~~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEv 243 (546)
T KOG2431|consen 168 DRDVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEV 243 (546)
T ss_pred ccceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhh
Confidence 344666787765 777778899999999999999999999999888887766765542221100 10011111
Q ss_pred ceeeecHHHHHHHhhhh-----H-HHHHHHhcccC---CCCcCCCCCCCCC-CCCCCcceeeccCCchHHHH-------H
Q 003553 409 AFYVWTSKEVEDILGEH-----A-ILFKEHYYLKP---TGNCDLSRMSDPH-NEFKGKNVLIELNDSSASAS-------K 471 (811)
Q Consensus 409 ayY~wt~~Ei~~~L~~~-----~-~~~~~~y~l~~---~Gn~e~~~~~dp~-~~f~g~nvL~~~~~~~~~a~-------~ 471 (811)
.----...++..+.|+. + .+....+++.. +|-++. ..+|+ |.|.+.+|-.....++ +-+ +
T Consensus 244 ttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi--~in~~tG~F~~~tI~lGaRgDS-yYEYLlKQwlQ 320 (546)
T KOG2431|consen 244 TTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI--FINPNTGLFVGSTITLGARGDS-YYEYLLKQWLQ 320 (546)
T ss_pred eeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE--EEcCCCCccccceEEeccccch-HHHHHHHHHHH
Confidence 11112233444555532 1 23333445432 233321 23453 7788877644433322 222 1
Q ss_pred cCCCH----HHHHHHHHHHHHHHHhhhc-------------CCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcc
Q 003553 472 LGMPL----EKYLNILGECRRKLFDVRS-------------KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMF 534 (811)
Q Consensus 472 ~g~~~----~~l~~~l~~~r~~L~~~R~-------------~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~ 534 (811)
.|-+. +...+.++.+++.|+.... .+..|-.|-- ++ + +.+.+..+..-|=
T Consensus 321 tg~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHL-VC----F-lpGtL~lG~~~Gl------- 387 (546)
T KOG2431|consen 321 TGKSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHL-VC----F-LPGTLALGSTNGL------- 387 (546)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceE-EE----e-ecchhhhccccCC-------
Confidence 23333 4444567777888875433 2344555543 22 1 2222222222111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe---EEEEe-cCC--CCCC-CCCcchH----HHHHHHHHHHHHHcCC
Q 003553 535 NFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR---LQHSF-RNG--PSKA-PGFLDDY----AFLISGLLDLYEFGSG 603 (811)
Q Consensus 535 ~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~---l~~~~-~~g--~~~~-~~~leDy----A~~i~aLL~LYeaTgd 603 (811)
|. .++-++.|+++.+-..+......+|. +.+.. .+. ..++ .+-+|-+ -..++++.-||.+|+|
T Consensus 388 --~~----~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D 461 (546)
T KOG2431|consen 388 --PA----SEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGD 461 (546)
T ss_pred --Cc----chHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCC
Confidence 11 14689999999999877654444553 32221 111 2221 1223323 3689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003553 604 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 671 (811)
Q Consensus 604 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 671 (811)
.+|.++.-++++.+.+.- .-.+|||-.-.+-. +...+.. |. -...-+++-|--|+-+.++
T Consensus 462 ~kYqewGW~if~sfekyt-rv~~ggytSi~nV~-~~~~~~R---Dk---MESF~laETLKYLYLLf~D 521 (546)
T KOG2431|consen 462 RKYQEWGWEIFQSFEKYT-RVPSGGYTSIDNVK-DQKPKRR---DK---MESFWLAETLKYLYLLFSD 521 (546)
T ss_pred chHHHHhHHHHHHHHHhc-ccCCCCccchhhhh-hcCCchh---hh---HHHHHHHHHHHHHHHhhcC
Confidence 999999999999987643 34467776543211 1111111 21 1223567777778888775
No 170
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=87.47 E-value=79 Score=38.68 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=41.1
Q ss_pred CCCcEEEEE-cCCCCCCCCCchhHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 322 VGGGFHRYS-VDERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 322 vgGGF~RYs-vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~---d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
-.||+. |+ .+..|.+ .-|-|..+.++..+..... ++...+..+++++||++ |++++|||.+
T Consensus 357 ~~GGW~-f~~~~~~~pd------sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 357 AKGGWC-FSDGDHGWPV------SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCccc-cccCCCCCCc------cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 457776 44 4566644 3357778887776644322 22455788999999996 8999999975
No 171
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=1.2 Score=41.47 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=36.2
Q ss_pred HHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCc-cHHHHHH
Q 003553 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYM 192 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~p-di~~~y~ 192 (811)
...+-++++-| -|.-+||.+||.+ ++.|.+ ++-++..|.+|..+++ +|.+++.
T Consensus 7 v~~~i~~~~VV--ifSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~~~g~eiq~~l~ 60 (104)
T KOG1752|consen 7 VRKMISENPVV--IFSKSSCPYCHRA-KELLSD------LGVNPKVVELDEDEDGSEIQKALK 60 (104)
T ss_pred HHHHhhcCCEE--EEECCcCchHHHH-HHHHHh------CCCCCEEEEccCCCCcHHHHHHHH
Confidence 45555555444 3456999999995 456766 6668889999987665 5655554
No 172
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=86.83 E-value=21 Score=41.18 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=82.8
Q ss_pred ccCCCC---CCCCCCCCh--hHHHHH-HHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcC----
Q 003553 263 SRFGGF---GSAPKFPRP--VEIQMM-LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD---- 332 (811)
Q Consensus 263 ~~~GGf---g~aPKFP~p--~~l~~L-l~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD---- 332 (811)
...||| |.-=||-.| .....| |..+..........+-+.+++-+.--|+=|.+ .++. .|+|+.-.-|
T Consensus 51 DlsGGW~DAGD~~Ky~~~~a~s~~~L~~~~~e~~~~~e~~~~~~dllde~kwg~D~llk--m~~~-~~~~~~qvgdg~~~ 127 (444)
T PF00759_consen 51 DLSGGWYDAGDYGKYTFPMAYSVTMLAWSAYEFFPAYESGNGIPDLLDEAKWGLDWLLK--MQDS-DGTFYAQVGDGGVD 127 (444)
T ss_dssp B---SB-SSSSS-EEHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--TBSC-TTEEEEEESTHHHH
T ss_pred cccCceeecCCcceecccHHHHHHHHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHh--ccCC-CCceeeeccCccch
Confidence 446998 555787554 223333 33332211000012246888888888887777 5554 3444431111
Q ss_pred -CCCCCC----C--------CchhHHH-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhcc-------CCC
Q 003553 333 -ERWHVP----H--------FEKMLYD-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDMI-------GPG 385 (811)
Q Consensus 333 -~~W~vP----H--------FEKMLyD-NA~Ll~~ya~Ay~~t~d------~~y~~~A~~t~~fl~~~m~-------~p~ 385 (811)
..|..| + .++.--+ .+..+.+++.|++++++ ..+++.|++..+|....-. ...
T Consensus 128 h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~ 207 (444)
T PF00759_consen 128 HKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNG 207 (444)
T ss_dssp HTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTT
T ss_pred hhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCccccc
Confidence 114332 1 1231223 68889999999999886 4677899999999987431 112
Q ss_pred CceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhh--HHHHHHHh
Q 003553 386 GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHY 433 (811)
Q Consensus 386 Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~--~~~~~~~y 433 (811)
+++|.+.+ +.+ | .+|...|+..+.|+. .+.+.+.+
T Consensus 208 ~~~Y~~~~-~~D---------e---~~wAA~~Ly~aTg~~~Y~~~a~~~~ 244 (444)
T PF00759_consen 208 GGFYNSSG-YED---------E---LAWAAAELYRATGDESYLDYAKEYY 244 (444)
T ss_dssp TTTSHCS--SHH---------H---HHHHHHHHHHHHT-HHHHHHHHHHC
T ss_pred CCcccCCC-ccc---------H---HHHHHHHHHHhcCcHHHHHHHHHhH
Confidence 45555311 100 0 268888999888854 34444444
No 173
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=86.54 E-value=1.2 Score=38.39 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=24.0
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCC
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~ 184 (811)
+.|+++||++|+.+.. .++.-. ++..|..+.||.++.
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~ 38 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSN 38 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCC
Confidence 5788999999999874 222211 222377777777654
No 174
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.12 E-value=0.99 Score=57.95 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=27.3
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEE
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKV 179 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkv 179 (811)
.||+|+|+|+++||+.|+.+.... .++.+..++ .|+.|-|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L---~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDL---EFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHH---HHHHHHcCCCCeEEEEE
Confidence 599999999999999999754321 233333432 4666665
No 175
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=86.06 E-value=0.83 Score=46.74 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=25.1
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCc
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP 185 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~p 185 (811)
+|.|+++||++|+... |.+.++-++ .|..|-|..++.+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~ 111 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQG 111 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCC
Confidence 6679999999999954 445544444 4655555555543
No 176
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=86.05 E-value=23 Score=39.08 Aligned_cols=142 Identities=11% Similarity=-0.001 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHH
Q 003553 545 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 610 (811)
Q Consensus 545 ~yle~A~~~~~~l~~~l~d------------~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTg--d~~yL~~A 610 (811)
++-+...++.+||.++... ..+|++-.....+ .....++-++++.+|+.+.+.+. +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999887631 1122221111110 01223578999999999998873 45666666
Q ss_pred HHHHHHHHHHccccCCCcccccCCC-CCccc-----ccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003553 611 IELQNTQDELFLDREGGGYFNTTGE-DPSVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 684 (811)
Q Consensus 611 ~~L~~~~~~~F~D~~~Ggyf~t~~~-~~~li-----~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 684 (811)
.+..+.+.... . .+|+|...... ....+ .-.....|...|+..+..+..|..+....... ..++.+.+++.
T Consensus 120 ~~a~~~L~~~Q-~-~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQ-N-SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhc-c-CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 77777777654 2 35666532111 10000 00011223344555666677777666543211 12355666666
Q ss_pred HHHHHHHH
Q 003553 685 LAVFETRL 692 (811)
Q Consensus 685 l~~~~~~i 692 (811)
++.+....
T Consensus 197 ~~~L~~~q 204 (348)
T cd02889 197 VKYLEREQ 204 (348)
T ss_pred HHHHHHhC
Confidence 66665443
No 177
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=86.05 E-value=10 Score=44.69 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003553 589 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 623 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 623 (811)
.+++...-||++|+|+-||+..+.+.+.++..+.-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 58999999999999999999999999999887754
No 178
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=85.96 E-value=1.3 Score=47.27 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHH-hcccEEEEEcC
Q 003553 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDR 181 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~l-n~~fv~vkvD~ 181 (811)
..+.-.||+|+|.|+++||.+|.....+ + .++.+.. ++.+..|-|+.
T Consensus 93 sLsd~kGK~vvl~FwAswCp~c~~e~p~-L--~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 93 ALSKFKGKVLLIVNVASKCGLTSSNYSE-L--SHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred eHHHhCCCeEEEEEEcCCCcchHHHHHH-H--HHHHHHHhcCCcEEEEEec
Confidence 4444468999999999999999874321 1 1233323 23566666664
No 179
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=85.83 E-value=1.1 Score=42.79 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=24.0
Q ss_pred hcCCcEEEEEcccCchh-hHHhhhhcCCCHHHHHHHhc
Q 003553 136 KRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND 172 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~w-C~~me~e~f~d~eva~~ln~ 172 (811)
-.+|+++|.|+++||.. |...-.+. .++.+.+.+
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l~~l---~~~~~~~~~ 54 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTLANL---AQALKQLGA 54 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHHHHH---HHHHHHhhH
Confidence 36899999999999998 98754432 334444543
No 180
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=85.56 E-value=0.72 Score=44.05 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCcEEEEEcc-------cCchhhHHhhhhcCCCHHHHHHHh---cccEEEEEcC
Q 003553 128 EEAFAEARKRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDR 181 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~-------~~C~wC~~me~e~f~d~eva~~ln---~~fv~vkvD~ 181 (811)
.++++...+.+++|||.|.+ +||+.|..-+ |-|.+.++ ++.+.|.|.+
T Consensus 9 ~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~ae------p~v~~~f~~~~~~~~lv~v~V 66 (119)
T PF06110_consen 9 EKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAE------PVVEKAFKKAPENARLVYVEV 66 (119)
T ss_dssp HHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHH------HHHHHHHHH-STTEEEEEEE-
T ss_pred HHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHH------HHHHHHHHhCCCCceEEEEEc
Confidence 44555556678999999853 6999999865 33444443 2455555544
No 181
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=85.19 E-value=51 Score=34.30 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003553 302 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 381 (811)
Q Consensus 302 ~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m 381 (811)
..+++.++++.+.. .. +.+|||.-+.... +-..++-+..+.++..+.... +......+++++||.+.
T Consensus 50 ~~~~~~~~~~~l~~--~q-~~dG~~~~~~~~~-------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~- 116 (300)
T cd00688 50 ADENIEKGIQRLLS--YQ-LSDGGFSGWGGND-------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL- 116 (300)
T ss_pred chHHHHHHHHHHHh--cc-CCCCCccCCCCCC-------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc-
Confidence 44555556665544 22 4578886321111 344566777888777655433 45677899999999975
Q ss_pred cCCCCceee
Q 003553 382 IGPGGEIFS 390 (811)
Q Consensus 382 ~~p~Ggfys 390 (811)
+.++|||..
T Consensus 117 q~~dG~~~~ 125 (300)
T cd00688 117 QNEDGGFRE 125 (300)
T ss_pred cCCCCCeee
Confidence 677888865
No 182
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=85.14 E-value=13 Score=42.41 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003553 551 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 622 (811)
Q Consensus 551 ~~~~~~l~~~l~d~~~--G~l~~~~~---~g~~---~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 622 (811)
.++..|-++|+...+. +.+.+.+. +|.. +...=.|.=-+.+.||+...+..+++.|++.|..|++.|.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4567777778765443 44555543 2321 12222344468899999999999999999999999999998766
Q ss_pred ccCCC-cccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003553 623 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 690 (811)
Q Consensus 623 D~~~G-gyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 690 (811)
.+..| +....+.... . .....-..-||= .+-..+-.++.++++ ..|.+.++..++.+..
T Consensus 154 ~~~~g~g~~LlPG~~g--F--~~~~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG--F--ADDGSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc--c--cCCCCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 55444 3443332210 0 000000011332 355566677888874 5688888877777654
No 183
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.14 E-value=34 Score=37.68 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=58.6
Q ss_pred HHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE
Q 003553 490 LFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL 569 (811)
Q Consensus 490 L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l 569 (811)
+......+...-+|+. -..--|.-|+++|+.+++ +.|.+++.++.+||+...+. +||+
T Consensus 29 ~~~~~~~~~~~TiDN~----aT~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGW 86 (290)
T TIGR02474 29 VKNGGGGNESGTIDNG----ATVTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGW 86 (290)
T ss_pred hccccCCCCcccccCc----cHHHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCc
Confidence 3333333566778887 222347789999999887 78999999999999998875 5665
Q ss_pred EEEecCCCC-CCCCCcchHH--HHHHHHHHHHHHcC
Q 003553 570 QHSFRNGPS-KAPGFLDDYA--FLISGLLDLYEFGS 602 (811)
Q Consensus 570 ~~~~~~g~~-~~~~~leDyA--~~i~aLL~LYeaTg 602 (811)
-..+..... ...-+.+|.+ .++..|.++++..+
T Consensus 87 PQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~ 122 (290)
T TIGR02474 87 PQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKD 122 (290)
T ss_pred CcccCCcCCcccccccCcHHHHHHHHHHHHHHhccC
Confidence 554432211 1123334443 57777777776433
No 184
>PLN02993 lupeol synthase
Probab=84.99 E-value=7.8 Score=47.98 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---Ch
Q 003553 301 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 364 (811)
Q Consensus 301 ~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~--~W~--vP---HFEKMLyD------NA~Ll~~ya~Ay~~t~---d~ 364 (811)
+.+.-+...|-.|.. -+|||.-|-.|+ .|. +| ||+..+.| -+..|.++..-..... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 444445555555644 469999999765 776 45 45566555 4556666554322221 23
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 003553 365 FYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 365 ~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
.....++++++||.+ .+.++|+||.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 346788999999987 5788999873
No 185
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=0.73 Score=53.76 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhccCcCe
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~---~fv~vkvD~ee~pdi~~~y~~~~q~~~g~gGW 204 (811)
.+-|+..-..+..|+|.|+|+||.-|+.+..+ =.+-|..|.+ .--..|||.++.-++.+.| +--|.
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPe---y~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gy 100 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPE---YEKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGY 100 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcH---HHHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCC
Confidence 45678888999999999999999999999863 2344555655 4467889999888887777 44455
Q ss_pred eehhhhhhchH--HH--HHHHHHHHHHHHHHh
Q 003553 205 KVKDAWDKKRD--ML--AQSGAFAIEQLSEAL 232 (811)
Q Consensus 205 ~i~~~w~~~r~--~~--~~~a~~i~~~l~~~~ 232 (811)
.-..+.++-+. +. -+.++.|+..|++..
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 33333333321 11 124577888887643
No 186
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=84.53 E-value=2.4 Score=42.37 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcc---cEEEEEcCCCC-ccHHHHHHHHHHHhccCcCee
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGWK 205 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~---fv~vkvD~ee~-pdi~~~y~~~~q~~~g~gGW~ 205 (811)
.+....=+||-|.+.|++.||..|+.+-- .=.++-+.+.++ |-.|-|+++.. -+++.+| .- -+|-|-
T Consensus 25 ~~~~~~l~gKvV~lyFsA~wC~pCR~FTP---~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~-~~-----~~~~W~ 95 (157)
T KOG2501|consen 25 VLASEALQGKVVGLYFSAHWCPPCRDFTP---ILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYM-LE-----HHGDWL 95 (157)
T ss_pred chHhHhhCCcEEEEEEEEEECCchhhCCc---hHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHH-Hh-----cCCCeE
Confidence 44444456899999999999999998743 445566677777 88888877643 4444433 22 357794
Q ss_pred ehhhhh
Q 003553 206 VKDAWD 211 (811)
Q Consensus 206 i~~~w~ 211 (811)
+.-.-.
T Consensus 96 ~iPf~d 101 (157)
T KOG2501|consen 96 AIPFGD 101 (157)
T ss_pred EecCCC
Confidence 443333
No 187
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=84.38 E-value=3 Score=35.79 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=23.8
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCC
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~ 184 (811)
+.|+.+||++|+.+.+ +.+.++..|..+.+|.++.
T Consensus 3 ~~y~~~~Cp~C~~~~~-------~l~~~~~~~~~~~v~~~~~ 37 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-------LLKELGVKPAVVELDQHED 37 (82)
T ss_pred EEEEcCCCHHHHHHHH-------HHHHcCCCcEEEEEeCCCC
Confidence 5678999999999864 2223333577777776654
No 188
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=84.13 E-value=15 Score=44.60 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCC---------CC-C------------C----hhHHHHHHHhhhhccccCCCCC
Q 003553 245 LPQNALRLCAEQLSKSYDSRFGGFGSAP---------KF-P------------R----PVEIQMMLYHSKKLEDTGKSGE 298 (811)
Q Consensus 245 ~~~~~~~~~~~~l~~~~D~~~GGfg~aP---------KF-P------------~----p~~l~~Ll~~~~~~~~~~~~~~ 298 (811)
...+.++++++-|.+.-+ ..|||+.-. ++ | . ...+..|.....+
T Consensus 385 ~~~~~l~~a~~~Ll~~Qn-~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r--------- 454 (621)
T TIGR01787 385 VKRDRLRDAVNWILGMQS-SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR--------- 454 (621)
T ss_pred ccHHHHHHHHHHHHHHcC-CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc---------
Confidence 356778888888887766 469998521 11 2 1 2344444433211
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003553 299 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 378 (811)
Q Consensus 299 ~~~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~ 378 (811)
.+...+.+.+-++=+.. .. +-+|+|+. .|.+.+ .|..+..+.+++.+.+...+. ..++++++||+
T Consensus 455 ~~~~~~~i~rAl~~L~~--~Q-~~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~ 519 (621)
T TIGR01787 455 ADEIRNVLERALEYLRR--EQ-RADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLL 519 (621)
T ss_pred cHhHHHHHHHHHHHHHH--hc-CCCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHH
Confidence 01222334444443332 12 24688763 677653 567777888887765443332 77899999999
Q ss_pred HhccCCCCcee
Q 003553 379 RDMIGPGGEIF 389 (811)
Q Consensus 379 ~~m~~p~Ggfy 389 (811)
+. +.++||+.
T Consensus 520 ~~-Q~~DGGWg 529 (621)
T TIGR01787 520 SR-QMPDGGWG 529 (621)
T ss_pred hh-cCCCCCCC
Confidence 85 67789884
No 189
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=84.01 E-value=2.3 Score=38.81 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCcEEEEEcc---cCchhhHHhhhhcCCCHHHHHHHhcccE-EEEEcCCCCccHH
Q 003553 129 EAFAEARKRDVPIFLSIGY---STCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDVD 188 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~---~~C~wC~~me~e~f~d~eva~~ln~~fv-~vkvD~ee~pdi~ 188 (811)
+.++...+++|-|+.+=|. +||+||+...+ +|++.-| +..+|.+++|++.
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~----------lL~~~~i~~~~~di~~~~~~~ 56 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQ----------ILKACGVPFAYVNVLEDPEIR 56 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHH----------HHHHcCCCEEEEECCCCHHHH
Confidence 4456666666555444443 89999998653 4443222 2245666666543
No 190
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=83.97 E-value=8 Score=45.46 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=74.5
Q ss_pred cchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC------
Q 003553 504 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP------ 577 (811)
Q Consensus 504 dKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~------ 577 (811)
...+.+|....|..+.+.|+.+||.. | .+++....++..+++..+..+...+...+.+.|-.
T Consensus 199 ~~~~~~w~l~~i~~~~~~y~~tGD~~----~--------l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~~~ 266 (509)
T PF05592_consen 199 GFGIPDWSLAWIIIPWDYYLYTGDRE----F--------LEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGNDG 266 (509)
T ss_dssp GGGBHHHHHHHHHHHHHHHHHHT-HH----H--------HHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----TT
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCHH----H--------HHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccCcc
Confidence 44677899999999999999999832 1 25677888889999887764300111111122211
Q ss_pred -CCCCCCcch---HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcc
Q 003553 578 -SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 629 (811)
Q Consensus 578 -~~~~~~leD---yA~~i~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggy 629 (811)
......+-. |..++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 267 DGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp ---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 111121212 455666688888999985 7999999999999999999887744
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=83.86 E-value=2 Score=39.39 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=22.8
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEE-EEEcCCCCccHH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVD 188 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~-vkvD~ee~pdi~ 188 (811)
+-|+.+||+||+.+.+ +|++.-|+ -.+|.++.|+..
T Consensus 11 vvysk~~Cp~C~~ak~----------~L~~~~i~~~~vdid~~~~~~ 47 (99)
T TIGR02189 11 VIFSRSSCCMCHVVKR----------LLLTLGVNPAVHEIDKEPAGK 47 (99)
T ss_pred EEEECCCCHHHHHHHH----------HHHHcCCCCEEEEcCCCccHH
Confidence 3567899999999775 45443332 234555666653
No 192
>PTZ00056 glutathione peroxidase; Provisional
Probab=83.83 E-value=1.7 Score=45.02 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=27.3
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
.||+|+|.|+++||.+|..... .+ .++.+.+. +.|..|-|+.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p-~L--~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVD-QM--NRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHH-HH--HHHHHHHhcCceEEEEecc
Confidence 5899999999999999985321 11 12333333 3576666654
No 193
>PLN03012 Camelliol C synthase
Probab=83.40 E-value=64 Score=40.18 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 324 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 324 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay----~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
||+.==..|..|.+.. |-|..|.+..-.. ...+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWTFSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred CcccccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 6655322466776652 3444443321111 122355667899999999998 9999999955
No 194
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=83.40 E-value=2 Score=36.23 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=29.1
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccE-EEEEcCCCCccHHHHHHHHHHHhc-cCcCe
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDVDKVYMTYVQALY-GGGGW 204 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv-~vkvD~ee~pdi~~~y~~~~q~~~-g~gGW 204 (811)
++.|+++||+.|+.+.. +|++.-+ .-.+|.++.++....+ ..++ |.++.
T Consensus 2 v~ly~~~~C~~C~~~~~----------~L~~~~~~~~~idi~~~~~~~~~~----~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMR----------TLDKLGAAYEWVDIEEDEGAADRV----VSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHH----------HHHHcCCceEEEeCcCCHhHHHHH----HHHhCCCcee
Confidence 45789999999999764 3333222 2346776666554333 3334 55555
No 195
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=82.93 E-value=3.4 Score=46.94 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc
Q 003553 549 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 628 (811)
Q Consensus 549 ~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg 628 (811)
..+++.+||.+++.-+.++ . ..+.|---=++-|||..|.++|+.-||+.|.+|.+.+..-|-.+..--
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~---VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IP 218 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------D---VNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIP 218 (546)
T ss_pred HHHHHHHHHHhhccccccc---------c---eehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 3455667777766321111 1 122233455678999999999999999999999999999994443223
Q ss_pred ccccCCCCCcccccccCCCCCCCCChHHHHH---HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003553 629 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV---INLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 692 (811)
Q Consensus 629 yf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a---~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 692 (811)
|-+..-.... ...++-. --|..|... ..+--|+++||+ +.|.+.|+++.+.+...-
T Consensus 219 ysdVnL~~~~-A~~p~~~----~~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~~~ 277 (546)
T KOG2431|consen 219 YSDVNLGTGT-AHPPRWT----GDSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHGLG 277 (546)
T ss_pred cceeecCCCc-ccCCCCC----CccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhccC
Confidence 3332211110 0111110 012222211 225579999996 789999999988875543
No 196
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.92 E-value=1.4 Score=50.15 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=48.1
Q ss_pred HHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.......+++.+|.|+++||..|+.+..+ |+ +++..+...-....||.++.+++-+.|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~-~~--~~~~~l~~~~~~~~vd~~~~~~~~~~y 97 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPT-YK--KLAKALKGKVKIGAVDCDEHKDLCEKY 97 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchH-HH--HHHHHhcCceEEEEeCchhhHHHHHhc
Confidence 35667789999999999999999999874 44 788888875566779999999987777
No 197
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=82.88 E-value=32 Score=39.05 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----
Q 003553 548 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 622 (811)
Q Consensus 548 e~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~----- 622 (811)
+.|+.+.....+... .|.+.+....|....-+..|---+++.++-++++.|+|..+++......+.+++.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455555555554442 578888776665544455666778999999999999999999777665555555432
Q ss_pred ----ccCCCcccccCC-------CCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHH
Q 003553 623 ----DREGGGYFNTTG-------EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVF 688 (811)
Q Consensus 623 ----D~~~Ggyf~t~~-------~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~---~~~~~~y~~~A~~~l~~~ 688 (811)
|+++| +..... .|...-.++...-+++.-.-|+.+..+|..++.+.. ++...+|++.|+++-+.|
T Consensus 127 ~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F 205 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKESF 205 (370)
T ss_pred ccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 22222 222211 010000011111122333456666666666665554 212357888898888888
Q ss_pred HHHH
Q 003553 689 ETRL 692 (811)
Q Consensus 689 ~~~i 692 (811)
....
T Consensus 206 ~~~F 209 (370)
T PF06202_consen 206 EKRF 209 (370)
T ss_pred HHHH
Confidence 7765
No 198
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=82.76 E-value=2.7 Score=34.62 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=23.8
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV 187 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi 187 (811)
+.-|+++||++|+.+.. .++. .+.-..++|.++.|..
T Consensus 2 i~lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~ 38 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAA 38 (74)
T ss_pred EEEEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHH
Confidence 35688999999999753 2322 2345566777665543
No 199
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=82.64 E-value=1.9 Score=42.21 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
..+.-.||+|+|.|+++||. |...-. .++ ++.+.+. +++..|-|..
T Consensus 16 ~l~~~~Gk~vvl~fwatwC~-C~~e~p-~l~--~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 16 SLSKYKGKVLLIVNVASKCG-FTPQYE-GLE--ALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred eHHHhCCCEEEEEEEcCCCC-chHHHH-HHH--HHHHHhcCCCEEEEEecc
Confidence 33444599999999999999 976432 221 3333343 3566666654
No 200
>PLN02993 lupeol synthase
Probab=82.43 E-value=70 Score=39.90 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 324 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL----TKDVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 324 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~----t~d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
||+.==..|..|.+-. |-|..+.+..-..+. .+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~Fs~~~~gyp~sD------dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGG~aa 534 (763)
T PLN02993 471 GAWTLSDRDHGWQVSD------CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLS-LQSENGGVTA 534 (763)
T ss_pred CcCcCccCCCCCCcCC------chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHh-hccCCCCEEe
Confidence 6665323466676642 456665532222222 2356677899999999998 9999999865
No 201
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=82.14 E-value=1.2 Score=48.47 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEE---cCCCCccHHHHH
Q 003553 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVY 191 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkv---D~ee~pdi~~~y 191 (811)
++.|..-|.+ -.-||+|+++||.-|++++. -=.+|---|..--.|||| |.+..|.|...+
T Consensus 34 ddkFkdnkdd-diW~VdFYAPWC~HCKkLeP---iWdeVG~elkdig~PikVGKlDaT~f~aiAnef 96 (468)
T KOG4277|consen 34 DDKFKDNKDD-DIWFVDFYAPWCAHCKKLEP---IWDEVGHELKDIGLPIKVGKLDATRFPAIANEF 96 (468)
T ss_pred hHHhhhcccC-CeEEEEeechhhhhcccccc---hhHHhCcchhhcCCceeecccccccchhhHhhh
Confidence 5566655553 45689999999999999986 224566667776788886 788889998877
No 202
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.86 E-value=3.6 Score=39.23 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=34.9
Q ss_pred HHHHHHHhh---cCCcEEEEEcc--------cCchhhHHhhhhcCCCHHHHHHHh---cccEEEEEcCCCCc
Q 003553 128 EEAFAEARK---RDVPIFLSIGY--------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERP 185 (811)
Q Consensus 128 ~~a~~~Ak~---~~Kpi~l~i~~--------~~C~wC~~me~e~f~d~eva~~ln---~~fv~vkvD~ee~p 185 (811)
.+.|++..+ .||-|||-|.+ |||+.|.+-| |-|.+.++ ++-..|.|++-+||
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AE------Pvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAE------PVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhh------HHHHHHHHhCCCceEEEEEEecCCC
Confidence 445555443 45669999854 5999999854 55666666 35567777776665
No 203
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=81.24 E-value=1.7 Score=47.66 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=34.8
Q ss_pred hhHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003553 342 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 389 (811)
Q Consensus 342 KMLyDNA---~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfy 389 (811)
+..+||. .-|..++++|+.++|+.|++.+.+.++||+. .+-|+|||-
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4455643 4577889999999999999999999999997 667899973
No 204
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=81.00 E-value=37 Score=40.99 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEEE----ecCC---
Q 003553 509 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQHS----FRNG--- 576 (811)
Q Consensus 509 sWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~-----l~d~~~G~l~~~----~~~g--- 576 (811)
+-.-+.|.++-+.++.++|.. | ..++...++++.+...+. ..| .+|.++.. |.|.
T Consensus 348 DAtLWfi~al~~Y~~~tgD~~----~--------l~~l~p~l~~ii~~y~~G~~~~i~~d-~dGLi~~g~~lTWMDa~~g 414 (575)
T TIGR01561 348 DASLWAIHAIDKTFAYSQDFL----F--------IRDVVDKVLDIIDNYCAGNDFAIGMD-NDLIFHKGAPLTWMDAKVD 414 (575)
T ss_pred hHHHHHHHHHHHHHHHhCCHH----H--------HHHHHHHHHHHHHHHhcCCCcEEEEC-CCccEeCCCCCCCCCCCCC
Confidence 344677889999999988721 0 134455555555543331 123 23444322 5443
Q ss_pred ----CCCCCCCcchHHHHHHHHHH---HHHHcCC--HHHHHHHHHHHHHHHHHccccCCCcccccC
Q 003553 577 ----PSKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 633 (811)
Q Consensus 577 ----~~~~~~~leDyA~~i~aLL~---LYeaTgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 633 (811)
.|..-+..|-+|..-.||.. +.+..|+ ..|.+.|.++.+.+.++||+++.|.+|+.-
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v 480 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDLI 480 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 12222567788877666555 5666665 468899999999999999998767666643
No 205
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=80.46 E-value=27 Score=37.24 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.4
Q ss_pred cccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003553 319 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 389 (811)
Q Consensus 319 ~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfy 389 (811)
|-+-+|||.= | -++-+=-....|..+..|++|.+...-+ ..+..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 3356788874 3 3334667888999999999999885433 56789999999998 78889884
No 206
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=79.83 E-value=9.9 Score=42.08 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE----ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHS----FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 619 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~----~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~ 619 (811)
.+.++.-+-++.-|++|-.-|+. |-+- |... |.. -.+++.-.=||.+|||+.||+.|.++.+.+.+
T Consensus 324 k~aie~heml~qvikkh~flpea--ft~df~vhwaeh-pir-------pefaestyflykat~dp~yl~v~k~iidnink 393 (587)
T KOG2430|consen 324 KEAIEMHEMLFQVIKKHKFLPEA--FTHDFQVHWAEH-PIR-------PEFAESTYFLYKATGDPHYLEVAKQIIDNINK 393 (587)
T ss_pred HHHHHHHHHHHHHHHHcccChHh--hcccceeecccC-CCC-------hhhhhhheeeecccCCchHHHHHHHHHHHHhh
Confidence 56777777788888777555542 2221 2211 111 23455566689999999999999999998865
Q ss_pred H
Q 003553 620 L 620 (811)
Q Consensus 620 ~ 620 (811)
.
T Consensus 394 y 394 (587)
T KOG2430|consen 394 Y 394 (587)
T ss_pred h
Confidence 4
No 207
>PRK10137 alpha-glucosidase; Provisional
Probab=79.25 E-value=1.8e+02 Score=36.51 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 003553 588 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 633 (811)
Q Consensus 588 A~~i---~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 633 (811)
+++. ..|.++++..|++ +|.++|.++.+.+.+.|||++.|.||+..
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6677788888865 48889999999999999999999888654
No 208
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=78.90 E-value=3.1 Score=39.48 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=27.0
Q ss_pred cCCcEEEEEc-ccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcCC
Q 003553 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (811)
Q Consensus 137 ~~Kpi~l~i~-~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~e 182 (811)
.||+++|.|+ +.||++|..+-.+ ++ ++.+.+. +++..|-|..+
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~-l~--~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACD-FR--DLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHH-HH--HHHHHHHHCCCEEEEEcCC
Confidence 4899999998 5899999986542 22 3333333 34544444443
No 209
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=78.72 E-value=2.3 Score=40.31 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=26.9
Q ss_pred cCCcEEEEEc-ccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 137 ~~Kpi~l~i~-~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
.||+++|.|+ +.||.+|.....+. .++.+.++ +++..|-|..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l---~~~~~~~~~~~~~~i~is~ 64 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF---RDLAEEFAKGGAEVLGVSV 64 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH---HHHHHHHHHCCCEEEEEeC
Confidence 6999999998 68999999865433 23344442 3444444443
No 210
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=78.66 E-value=1.7e+02 Score=35.81 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCC--C---CCCC--CchhH------HHHHHHHHHHHHHHHccCChHHH
Q 003553 301 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDER--W---HVPH--FEKML------YDQGQLANVYLDAFSLTKDVFYS 367 (811)
Q Consensus 301 ~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~--W---~vPH--FEKML------yDNA~Ll~~ya~Ay~~t~d~~y~ 367 (811)
.+++-+..-|..|-. -+|||-.|..+.. | ..|+ |..++ -..++.|.++..+. .+.+.+.
T Consensus 388 ~~l~~a~~~Ll~~Qn------~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~--~r~~~~~ 459 (621)
T TIGR01787 388 DRLRDAVNWILGMQS------SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG--HRADEIR 459 (621)
T ss_pred HHHHHHHHHHHHHcC------CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc--CccHhHH
Confidence 334444444554533 4699998876544 2 2251 22221 13666776665432 1234677
Q ss_pred HHHHHHHHHHHHhccCCCCceee
Q 003553 368 YICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 368 ~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
+.++++++||.+ .+.++|+||.
T Consensus 460 ~~i~rAl~~L~~-~Q~~DGsw~g 481 (621)
T TIGR01787 460 NVLERALEYLRR-EQRADGSWFG 481 (621)
T ss_pred HHHHHHHHHHHH-hcCCCCCCcc
Confidence 899999999987 5678888863
No 211
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=78.58 E-value=1.2e+02 Score=34.00 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 622 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 622 (811)
+..++.-+...+|+.++-. | +|-+.-+- +++.+. .-....--=++..|...|++.++++||+.|.+..+.+.++=.
T Consensus 241 ~~~~~dVK~sldym~~~rf-p-sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRF-P-SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccC-C-CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 5567888889999887653 3 34333221 111110 000011112577889999999999999999999999876522
Q ss_pred ccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003553 623 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 684 (811)
Q Consensus 623 D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 684 (811)
=+++-| .-+| -+||+ -.++.|+++|++ .+|..||.+.
T Consensus 318 Lkkg~G-----------------ichG--vaGNa---YvFLsLyRLT~d---~kYlyRA~kF 354 (403)
T KOG2787|consen 318 LKKGVG-----------------ICHG--VAGNA---YVFLSLYRLTGD---MKYLYRAKKF 354 (403)
T ss_pred hhcCCc-----------------cccc--ccCch---hhhHhHHHHcCc---HHHHHHHHHH
Confidence 111101 1111 25665 357778999986 8999999743
No 212
>PLN02412 probable glutathione peroxidase
Probab=78.52 E-value=2.1 Score=42.78 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=28.2
Q ss_pred cCCcEEEEEcccCchhhHH-hhhhcCCCHHHHHHHh-cccEEEEEcCC
Q 003553 137 RDVPIFLSIGYSTCHWCHV-MEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~-me~e~f~d~eva~~ln-~~fv~vkvD~e 182 (811)
.||+|+|.|+++||+.|.. |.. + .++.+... ++|..|=|..+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~--l--~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKE--L--NVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHH--H--HHHHHHHhhCCcEEEEeccc
Confidence 5899999999999999995 332 2 23333333 35666666553
No 213
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=78.14 E-value=4.5 Score=33.29 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=13.8
Q ss_pred EEEEcccCchhhHHhhh
Q 003553 142 FLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~ 158 (811)
++.|+.+||+.|+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~ 18 (73)
T cd02976 2 VTVYTKPDCPYCKATKR 18 (73)
T ss_pred EEEEeCCCChhHHHHHH
Confidence 46788999999998653
No 214
>PHA03050 glutaredoxin; Provisional
Probab=77.08 E-value=6.7 Score=36.66 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred EEEEcccCchhhHHhh
Q 003553 142 FLSIGYSTCHWCHVME 157 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me 157 (811)
++-|+.+||+||+...
T Consensus 15 V~vys~~~CPyC~~ak 30 (108)
T PHA03050 15 VTIFVKFTCPFCRNAL 30 (108)
T ss_pred EEEEECCCChHHHHHH
Confidence 4467799999999865
No 215
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=77.06 E-value=48 Score=40.66 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC-CCcchHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-GFLDDYAF 589 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~-~~leDyA~ 589 (811)
++++.||..++ +.+.|++..+||.+.... +|.+++. +-+|++.+. -.+|-|++
T Consensus 301 a~~a~AL~~~G-----------------------~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~ 355 (648)
T TIGR01535 301 YQVANAFLAAG-----------------------DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAF 355 (648)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHH
Confidence 67888888775 457889999999888754 4555554 468877654 66778899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHh
Q 003553 590 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 669 (811)
Q Consensus 590 ~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt 669 (811)
.|.++..+++... ..|....+.+++++.+. +....-+ .+|...+..|+-.|...-+|.+.+.+.
T Consensus 356 ~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p~p~~d--------------~WEer~g~~~~T~a~v~aaL~~Aa~iA 419 (648)
T TIGR01535 356 PILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GPKTGQE--------------RWEEIGGYSPSTLAAEIAGLTAAADIA 419 (648)
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CCCCCCC--------------cccccCCcCchhHHHHHHHHHHHHHHH
Confidence 9999888888543 44555666667666653 2111101 123334556776676556666555544
Q ss_pred ---CCCC-chHHHHHHHHHHHH
Q 003553 670 ---AGSK-SDYYRQNAEHSLAV 687 (811)
Q Consensus 670 ---~~~~-~~~y~~~A~~~l~~ 687 (811)
|+.. ...|++.|+++-+.
T Consensus 420 ~~~g~~~~a~~w~~~Ad~i~~~ 441 (648)
T TIGR01535 420 EQNGDAGSAQKYRETADNWQKL 441 (648)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 4311 23455555554433
No 216
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=76.67 E-value=1.5 Score=42.95 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=29.8
Q ss_pred HHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
+..+.-.||+|+|.+.++||+.|..... .-.++.+.+. +.+..|-|+.
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~---~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYR---ALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHH---HHHHHHHHHhhCCeEEEEEec
Confidence 3444556999999999999999976332 1124444443 3455555543
No 217
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=76.64 E-value=4.7 Score=39.22 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=28.1
Q ss_pred hcCCcEEEEEccc-CchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcCCC
Q 003553 136 KRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE 183 (811)
Q Consensus 136 ~~~Kpi~l~i~~~-~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ee 183 (811)
-.+|+++|.|++. ||.+|...-. .+ .++++.++ +++..|-|..+.
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~-~l--~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQAC-GL--RDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCC
Confidence 3589999999975 7889987543 22 23334444 456556665543
No 218
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=76.28 E-value=41 Score=41.13 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 582 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~---------~~~~ 582 (811)
++++.||++++.. + +++-...+++.+||.++-.....|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 8889999886432 1 24556778899999877643222211111111111 2234
Q ss_pred CcchHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHccccCCCcccc-cCCCCCccc--cccc-----CCCC
Q 003553 583 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVL--LRVK-----EDHD 648 (811)
Q Consensus 583 ~leDyA~~i~aLL~LYeaTg------d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~-t~~~~~~li--~R~k-----~~~D 648 (811)
..||-|..+.||+.+..... ....+.+|.+....+. .+ +|||.. ........+ +.+. -..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Q----n~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQ----NE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhc----CC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 56889999999998865322 2345566665554443 23 455542 221111110 0000 1225
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003553 649 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 691 (811)
Q Consensus 649 ~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 691 (811)
...+..++.++..|..+.........++.....++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 5667777777777766654322100122334445555555443
No 219
>PRK10137 alpha-glucosidase; Provisional
Probab=75.97 E-value=2.2e+02 Score=35.78 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=40.2
Q ss_pred HHH-HHHHH---HHHHHHHHccCCh----HHHHHHHHHHHHHHHhccCCCCceeeeccCC
Q 003553 344 LYD-QGQLA---NVYLDAFSLTKDV----FYSYICRDILDYLRRDMIGPGGEIFSAEDAD 395 (811)
Q Consensus 344 LyD-NA~Ll---~~ya~Ay~~t~d~----~y~~~A~~t~~fl~~~m~~p~Ggfysa~DAD 395 (811)
..| ||.|. ..+++.+...|++ .|++.|++.-+.|.+.||+++-|||...|-+
T Consensus 577 ~VDLNsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~ 636 (786)
T PRK10137 577 SVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIE 636 (786)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecC
Confidence 345 88887 5667777778864 4788888999999999999998888765544
No 220
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=75.35 E-value=2.3 Score=46.56 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=42.8
Q ss_pred hhcCCcEEEEEcccCchhhHHhhhhcCCCHH-H--HHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEG-V--AKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~e-v--a~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
...+..|||.|+|+||...+++.. +|+... + +++=+...|.-+||.+...+|.+.|-
T Consensus 10 l~s~elvfv~FyAdWCrFSq~L~p-iF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~ 69 (375)
T KOG0912|consen 10 LDSNELVFVNFYADWCRFSQMLKP-IFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYH 69 (375)
T ss_pred hccceEEeeeeehhhchHHHHHhH-HHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhc
Confidence 345889999999999999999876 554322 1 12222456889999999999999884
No 221
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=75.10 E-value=3.2 Score=39.90 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=27.6
Q ss_pred HHHhhcC-CcEEEEEc-ccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcCC
Q 003553 132 AEARKRD-VPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (811)
Q Consensus 132 ~~Ak~~~-Kpi~l~i~-~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~e 182 (811)
....-.+ |+++|.|+ ++||..|...-. .+ .++.+.+. +++..|-|..+
T Consensus 21 ~l~~~~g~k~~vl~f~~~~~c~~C~~~~~-~l--~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 21 RLSEFRGRKPVVLVFFPLAFTPVCTKELC-AL--RDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred eHHHHcCCCeEEEEEeCCCCCccHHHHHH-HH--HHHHHHHHhCCCEEEEecCC
Confidence 3344345 88888876 899999975332 22 24444443 34555555443
No 222
>PLN02266 endoglucanase
Probab=74.53 E-value=91 Score=37.16 Aligned_cols=122 Identities=11% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------hH-HHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------DY-AFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~--~~~le------------------Dy-A~~i~aLL~LYeaTg 602 (811)
+++|+.++-..||+++-... +|.+++...++..+. ++.+| |. +.++.+|...+.+..
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999987643 578888765442110 01111 22 334445555555544
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003553 603 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 673 (811)
Q Consensus 603 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 673 (811)
|+ +.|+.|+++++.++++ .|.|....... ... ...| -.-.++++-..|+..||+
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~---~y~s~s~~~DEl~WAAawLy~ATGd-- 270 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCP---FYCSYSGYQDELLWGAAWLHKATKN-- 270 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCC---CcccCCcchHHHHHHHHHHHHHhCC--
Confidence 44 4588888888887642 23231110000 000 1111 122566777889999986
Q ss_pred chHHHHHHHHHH
Q 003553 674 SDYYRQNAEHSL 685 (811)
Q Consensus 674 ~~~y~~~A~~~l 685 (811)
..|.+.++...
T Consensus 271 -~~Yl~~~~~~~ 281 (510)
T PLN02266 271 -PTYLNYIQVNG 281 (510)
T ss_pred -HHHHHHHHHHH
Confidence 78998876543
No 223
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=74.08 E-value=2.2 Score=39.39 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.5
Q ss_pred cCCcEEEEEccc-CchhhHHhh
Q 003553 137 RDVPIFLSIGYS-TCHWCHVME 157 (811)
Q Consensus 137 ~~Kpi~l~i~~~-~C~wC~~me 157 (811)
.|||++|.|+.. ||+.|..--
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l 45 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL 45 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccch
Confidence 789999999998 999998643
No 224
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=73.74 E-value=6.1 Score=42.63 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHH
Q 003553 510 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 588 (811)
Q Consensus 510 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~~~~~~leDyA 588 (811)
|.+-.+.-+.+|+.-... +.=++.+.+...-+. .++ |......+-||-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 456667777777754332 334555555542221 122 3334567888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHccccCCCcccc
Q 003553 589 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGYFN 631 (811)
Q Consensus 589 ~~i~aLL~LYeaTgd~~yL~~A~-~L~~~~~~~F~D~~~Ggyf~ 631 (811)
+++.|+-++|.++| .+++.|. .+.+.+.+-..|..+||+-+
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~pW 138 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGIPW 138 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcccc
Confidence 99999999999999 7777776 55666666667777776433
No 225
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=73.42 E-value=5.5 Score=45.30 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=46.2
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCC
Q 003553 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee 183 (811)
-++|++.||+.++..+|.| .-.-.--.+|++-++.|.-|...+...||.|||+..+
T Consensus 8 ipeAIa~aK~kkalfVVyI-~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags 63 (506)
T KOG2507|consen 8 IPEAIAEAKGKKALFVVYI-SGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGS 63 (506)
T ss_pred hHHHHHHhhcCCeEEEEEE-ecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCc
Confidence 3799999998655555555 5556778899999999999999999999999999854
No 226
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=73.11 E-value=2.3e+02 Score=34.96 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhccc-cCCCCCCCCCCCChhHH--------------------HHHHHhhhhccccCCCCCCHHHHHH
Q 003553 247 QNALRLCAEQLSKSYDS-RFGGFGSAPKFPRPVEI--------------------QMMLYHSKKLEDTGKSGEASEGQKM 305 (811)
Q Consensus 247 ~~~~~~~~~~l~~~~D~-~~GGfg~aPKFP~p~~l--------------------~~Ll~~~~~~~~~~~~~~~~~~~~~ 305 (811)
.++..+.+-.|+...|. ..|++=-+|-+|.|... ..|+..+ ......++.+.
T Consensus 250 ~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G-------~~~~a~~~~~~ 322 (648)
T TIGR01535 250 NSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAG-------DVDSALRSLDY 322 (648)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCC-------CHHHHHHHHHH
Confidence 34556666677888888 45888888877765321 2222221 11112333333
Q ss_pred HHHHHHHHHhCCCcccCCCc-EEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003553 306 VLFTLQCMAKGGIHDHVGGG-FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 381 (811)
Q Consensus 306 ~~~TL~~Ma~GGi~D~vgGG-F~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m 381 (811)
+..+.. -.|+ .++|.+|..-..+ |.=|---|.+|++....++... ..|...++.+++||.+..
T Consensus 323 l~~~~~----------~~G~~lq~y~vdG~~~~~--~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 323 LAKVQQ----------DNGMFPQNSWVDGKPYWT--GIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHhc----------cCCCcCceeccCCCCCCC--CccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcC
Confidence 333322 1344 5679999775544 4444446777776666666433 678889999999999854
No 227
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=73.00 E-value=5.5 Score=35.68 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=13.2
Q ss_pred CCcEEEEE-c---ccCchhhHHhh
Q 003553 138 DVPIFLSI-G---YSTCHWCHVME 157 (811)
Q Consensus 138 ~Kpi~l~i-~---~~~C~wC~~me 157 (811)
++||+|.. + .+||+||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak 30 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVV 30 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHH
Confidence 34555554 2 37999999855
No 228
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=72.25 E-value=9.6 Score=31.01 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDV 187 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi 187 (811)
+-++++||++|+.... +|++ +.-...+|....++.
T Consensus 3 ~ly~~~~Cp~C~~~~~----------~L~~~~i~~~~~di~~~~~~ 38 (72)
T cd02066 3 VVFSKSTCPYCKRAKR----------LLESLGIEFEEIDILEDGEL 38 (72)
T ss_pred EEEECCCCHHHHHHHH----------HHHHcCCcEEEEECCCCHHH
Confidence 4577899999998764 3333 233345677766663
No 229
>PLN02345 endoglucanase
Probab=71.87 E-value=1.4e+02 Score=35.38 Aligned_cols=118 Identities=11% Similarity=-0.028 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcch-------------------HHHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~leD-------------------yA~~i~aLL~LYeaTg 602 (811)
+++++.++-..|||++... .+|.+++...++..+ .+..+|| -+.++.+|...+.+..
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7899999999999988653 357888875554221 1122222 1345555555555554
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCCh--HHHHHHHHHHHHHHhCCCCc
Q 003553 603 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG--NSVSVINLVRLASIVAGSKS 674 (811)
Q Consensus 603 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~--Nsv~a~~L~rL~~lt~~~~~ 674 (811)
|+ ++|+.|+++++.+.+. .|.|....... .+..+|. +-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~~-----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIPEV-----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCcc-----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 43 5688999998887753 22232211000 0111221 12578888889999996
Q ss_pred hHHHHHHH
Q 003553 675 DYYRQNAE 682 (811)
Q Consensus 675 ~~y~~~A~ 682 (811)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 78988774
No 230
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=71.77 E-value=6 Score=38.39 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=44.0
Q ss_pred HhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH
Q 003553 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 134 Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
-.+++|.|+|-||-+|=+.|..|++..+ .+++.+.+-.+..-||.++-|+..+.|.
T Consensus 16 ~~e~drvvViRFG~d~d~~Cm~mDeiL~---~~a~~v~~~a~IY~vDi~~Vpdfn~~ye 71 (133)
T PF02966_consen 16 LSEEDRVVVIRFGRDWDPVCMQMDEILY---KIAEKVKNFAVIYLVDIDEVPDFNQMYE 71 (133)
T ss_dssp HH-SSSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTEEEEEEETTTTHCCHHHTT
T ss_pred hccCceEEEEEeCCCCCccHHHHHHHHH---HHHHHhhcceEEEEEEcccchhhhcccc
Confidence 3568999999999999999999997554 4566666555777799999999988884
No 231
>PLN03012 Camelliol C synthase
Probab=71.76 E-value=19 Score=44.57 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003553 548 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 614 (811)
Q Consensus 548 e~A~~~~~~l~~~l~d~~~G~l~~~~~---~g~----~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~ 614 (811)
+..+++.+||+++... +|+...++. +.. .....++.--|+++.||+...+...|+.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5678899999988654 455544432 211 0123555667899999988866656666777777654
No 232
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=71.68 E-value=8.8 Score=38.11 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=27.2
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-ccc--EEEEEcC
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWF--VSIKVDR 181 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~f--v~vkvD~ 181 (811)
.+|+++|.|+++||+.|..+..+ + .++.+.+. +++ |.|-+|.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~-l--~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDR-L--NRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHH-H--HHHHHHHhhCCeEEEEEecCc
Confidence 68999999999999999865432 2 23444443 344 4454454
No 233
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.86 E-value=8.6 Score=32.63 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=23.8
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcc-cEEEEEcCCCCccHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDK 189 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~-fv~vkvD~ee~pdi~~ 189 (811)
++-++.++|++|+...+ +|+++ .-...+|.++.|+...
T Consensus 3 v~ly~~~~C~~C~ka~~----------~L~~~gi~~~~~di~~~~~~~~ 41 (73)
T cd03027 3 VTIYSRLGCEDCTAVRL----------FLREKGLPYVEINIDIFPERKA 41 (73)
T ss_pred EEEEecCCChhHHHHHH----------HHHHCCCceEEEECCCCHHHHH
Confidence 34678899999998653 44442 2233457777776533
No 234
>PLN02171 endoglucanase
Probab=70.18 E-value=1.6e+02 Score=35.98 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc------------------h-HHHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD------------------D-YAFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~le------------------D-yA~~i~aLL~LYeaTg 602 (811)
+..|+.++-..||+++-.- +.+.+++...+|..+ .+..+| | -+.++.+|...+.+..
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 6799999999999998763 457788776554221 011122 1 2334445555555543
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003553 603 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 673 (811)
Q Consensus 603 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 673 (811)
|+. .|+.|+++++.++++ .|. |..+... ..+..+| -+-.++++-..|++.||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~-y~~~~~~----------~~~~Y~s~s~y~DEl~WAAawLy~ATgd-- 255 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKY-----RGK-YDSSITV----------AQKYYRSVSGYGDELLWAAAWLYQATNN-- 255 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCcc----------cCCccCCCCCccHHHHHHHHHHHHHhCC--
Confidence 444 588888888887653 121 2111000 0011111 124678888889999996
Q ss_pred chHHHHHHHHHHH
Q 003553 674 SDYYRQNAEHSLA 686 (811)
Q Consensus 674 ~~~y~~~A~~~l~ 686 (811)
..|.+.+.+...
T Consensus 256 -~~Yl~~~~~~~~ 267 (629)
T PLN02171 256 -QYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHH
Confidence 789988765433
No 235
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.65 E-value=2.7 Score=43.05 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
+..+.=.||+|+|.+.|+||+.|..|.. + .++.+... +.|+.|=+..
T Consensus 18 v~Ls~~~GKvvLVvf~AS~C~~~~q~~~--L--~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 18 TTLEKYAGNVLLIVNVASKCGLTPQYEQ--L--ENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred EeHHHhCCCEEEEEEEeCCCCCcHHHHH--H--HHHHHHHhhCCeEEEEeec
Confidence 3445556899999999999999976542 1 12333332 3566666654
No 236
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=69.24 E-value=2.7 Score=40.62 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=41.6
Q ss_pred hHHHHHHHhhcCCc-EEEEEcccCchhhHHhhhhcCCCHHHHHHHhcc-cEEEEE-cCCCCccHHHHHHHHHHHhccCcC
Q 003553 127 GEEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKV-DREERPDVDKVYMTYVQALYGGGG 203 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kp-i~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~-fv~vkv-D~ee~pdi~~~y~~~~q~~~g~gG 203 (811)
.++..+..+.-.|+ -++.|+.+||+.|... =|-+.++...+ -|.+++ .|++++++-+.| ++ .||
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~------vP~l~kiae~~p~i~~~~i~rd~~~el~~~~------lt-~g~ 95 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARN------VPVLAKIAEANPNIEVRIILRDENKELMDQY------LT-NGG 95 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHH------HHHHHHHHHH-TTEEEEEE-HHHHHHHTTTT------TT--SS
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHH------HHHHHHHHHhCCCCeEEEEEecCChhHHHHH------Hh-CCC
Confidence 35556665555554 5667788999999984 36666666654 455553 566666654333 34 566
Q ss_pred e------------eehhhhhhchHHHHHH
Q 003553 204 W------------KVKDAWDKKRDMLAQS 220 (811)
Q Consensus 204 W------------~i~~~w~~~r~~~~~~ 220 (811)
. .....|-.+++.+.+.
T Consensus 96 ~~IP~~I~~d~~~~~lg~wgerP~~~~~~ 124 (129)
T PF14595_consen 96 RSIPTFIFLDKDGKELGRWGERPKEVQEL 124 (129)
T ss_dssp --SSEEEEE-TT--EEEEEESS-HHHH--
T ss_pred eecCEEEEEcCCCCEeEEEcCCCHHHhhc
Confidence 6 3444677888776544
No 237
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=68.05 E-value=1.9e+02 Score=31.54 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 003553 550 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 627 (811)
Q Consensus 550 A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leD--yA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 627 (811)
-.++.+||.+.... +|++- |.+ +...| |+|.+.|.+.+ + +...|.+ ...+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf~-----gr~---~k~~D~~ysf~~~a~l~~--l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGLN-----GRP---EKLPDVCYSWWVLSSLKI--I-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCcC-----CCC---CCCCchhHhhHHHHHHHH--h-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888776632 36552 222 11122 45555555533 3 4445665 788888887765 34567
Q ss_pred cccccC
Q 003553 628 GYFNTT 633 (811)
Q Consensus 628 gyf~t~ 633 (811)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 776543
No 238
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=66.98 E-value=74 Score=34.36 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC-CChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 003553 246 PQNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 324 (811)
Q Consensus 246 ~~~~~~~~~~~l~~~~D~~~GGfg~aPKF-P~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgG 324 (811)
+....+++++-+.+..+...|||+..|-- |......+.+......++. .. ...-++-+...|.+. -+-.|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~-~~~~~~~~~~~l~~~------q~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--AL-SRIDREKIYKFLSSL------QNPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--cc-chhhHHHHHHHHHHh------cCCCC
Confidence 34567788888887773457999997643 2222222222221111110 00 011122222223333 12458
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003553 325 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 325 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfys 390 (811)
||. ++. |...|.-=.-+ -+.+..+.+... ....+++++||.+ .+.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~ty~--------al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFVYC--------ALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHHHH--------HHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 443 44333322211 122222233322 4567889999997 5788999843
No 239
>PLN02308 endoglucanase
Probab=66.81 E-value=2.3e+02 Score=33.69 Aligned_cols=121 Identities=9% Similarity=-0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc-------------------hHHHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD-------------------DYAFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~--~~~le-------------------DyA~~i~aLL~LYeaTg 602 (811)
+..++.++-..||+++-.. .+|.+++...++..+. ++.++ --+.++.+|...+.+..
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 5689999999999998763 3578888765542111 01111 12345556666666655
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCCh---HHHHHHHHHHHHHHhCCCC
Q 003553 603 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG---NSVSVINLVRLASIVAGSK 673 (811)
Q Consensus 603 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~---Nsv~a~~L~rL~~lt~~~~ 673 (811)
|+. .|+.|+++++.++++ .|.|-..... ...+...+. +-.++++-..|+..|++
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~----------~~~~~Y~~~s~~~DEl~WAAawLy~ATgd-- 252 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKY-----RGAYSSSLHA----------AVCPFYCDFNGYQDELLWGAAWLHKASRR-- 252 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCCc----------ccCCCcCCCCcccHHHHHHHHHHHHHhCC--
Confidence 554 578888888777652 2333221100 000112221 34678888889999986
Q ss_pred chHHHHHHHHH
Q 003553 674 SDYYRQNAEHS 684 (811)
Q Consensus 674 ~~~y~~~A~~~ 684 (811)
..|++.+...
T Consensus 253 -~~Yl~~~~~~ 262 (492)
T PLN02308 253 -REYREYIVKN 262 (492)
T ss_pred -HHHHHHHHHH
Confidence 7898877553
No 240
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=66.46 E-value=93 Score=32.34 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC--CChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 003553 246 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 323 (811)
Q Consensus 246 ~~~~~~~~~~~l~~~~D~~~GGfg~aPKF--P~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vg 323 (811)
....++++++.|.+.- ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ...+
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3466788888887655 458999887764 34332222222221111000 01122333334433331 2245
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003553 324 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 388 (811)
Q Consensus 324 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggf 388 (811)
|||..+.-... ..|+-+.-....+..+.+++.+..... ...++++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 78875432210 012223344557778888877665443 467899999999865 678888
No 241
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.79 E-value=4.1 Score=46.24 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=39.2
Q ss_pred HHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHh--cccEEEEEcCCCCccHHHHH
Q 003553 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln--~~fv~vkvD~ee~pdi~~~y 191 (811)
...+..+++.||.|+++||..|++|+.+..+-+. .+. ......++|.+..+.+.+.+
T Consensus 156 ~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~---~~~~~~~v~~~~~d~~~~~~~~~~~ 214 (383)
T KOG0191|consen 156 ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAK---LLKSKENVELGKIDATVHKSLASRL 214 (383)
T ss_pred hhhhccCcceEEEEeccccHHhhhcChHHHHHHH---HhccCcceEEEeeccchHHHHhhhh
Confidence 3466778999999999999999999765544333 443 45666778877444444433
No 242
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=64.84 E-value=16 Score=29.71 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=24.7
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee~pdi~~~y 191 (811)
+-|+.++|++|+...+ +|++ ++-...+|.++.++..+.+
T Consensus 2 ~vy~~~~C~~C~~~~~----------~L~~~~i~y~~~dv~~~~~~~~~l 41 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKE----------FLDEKGIPYEEVDVDEDEEAREEL 41 (60)
T ss_dssp EEEESTTSHHHHHHHH----------HHHHTTBEEEEEEGGGSHHHHHHH
T ss_pred EEEEcCCCcCHHHHHH----------HHHHcCCeeeEcccccchhHHHHH
Confidence 5678899999998764 4554 3333446777766444333
No 243
>PRK10638 glutaredoxin 3; Provisional
Probab=64.02 E-value=9.9 Score=33.23 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=12.5
Q ss_pred EEEEcccCchhhHHhh
Q 003553 142 FLSIGYSTCHWCHVME 157 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me 157 (811)
++-++.+||+||+...
T Consensus 4 v~ly~~~~Cp~C~~a~ 19 (83)
T PRK10638 4 VEIYTKATCPFCHRAK 19 (83)
T ss_pred EEEEECCCChhHHHHH
Confidence 3456789999999854
No 244
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=63.94 E-value=26 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhccCCCCcee
Q 003553 367 SYICRDILDYLRRDMIGPGGEIF 389 (811)
Q Consensus 367 ~~~A~~t~~fl~~~m~~p~Ggfy 389 (811)
...++++++||++ ++.++|||-
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cHHHHHHHHHHHH-hcCCCCCCC
Confidence 6788999999998 778899983
No 245
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=63.72 E-value=61 Score=39.70 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhh------------ccccCCCCCCC--CC-CCChh----HHHHHHHhhhhccccCCCCCCHHHHHHHHHH
Q 003553 249 ALRLCAEQLSKS------------YDSRFGGFGSA--PK-FPRPV----EIQMMLYHSKKLEDTGKSGEASEGQKMVLFT 309 (811)
Q Consensus 249 ~~~~~~~~l~~~------------~D~~~GGfg~a--PK-FP~p~----~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~T 309 (811)
.+.++.+-|.+. -+.+.||||-. +. +|... .|..|+... ..+ ......+.+-+..-
T Consensus 337 ~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~--~~~---~~~~~~~i~ra~~w 411 (635)
T TIGR01507 337 ALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR--LPD---ERRRRDAMTKAFRW 411 (635)
T ss_pred HHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC--CCc---cccchHHHHHHHHH
Confidence 456666555544 34568999876 77 45532 333333321 000 00112344445555
Q ss_pred HHHHHhCCCcccCCCcEEEEEcCCCCC----CCCCc---hhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 003553 310 LQCMAKGGIHDHVGGGFHRYSVDERWH----VPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 377 (811)
Q Consensus 310 L~~Ma~GGi~D~vgGGF~RYsvD~~W~----vPHFE---KML-----yDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl 377 (811)
|-.|.. -+|||.-|..+.... +| |. .|+ -+-|+.+.+|.... ...-...++++++||
T Consensus 412 Ll~~Qn------~dGgw~af~~~~~~~~l~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~g----~~~~~~~i~rav~~L 480 (635)
T TIGR01507 412 IAGMQS------SNGGWGAFDVDNTSDLLNHIP-FCDFGAVTDPPTADVTARVLECLGSFG----YDDAWPVIERAVEYL 480 (635)
T ss_pred HHHhcC------CCCCEecccCCcchhHHhcCC-ccccccccCCCCccHHHHHHHHHHHhC----CCchhHHHHHHHHHH
Confidence 565644 479997665444321 34 22 121 12678888887642 211267899999999
Q ss_pred HHhccCCCCceee
Q 003553 378 RRDMIGPGGEIFS 390 (811)
Q Consensus 378 ~~~m~~p~Ggfys 390 (811)
++ ++.++||+|.
T Consensus 481 ~~-~Q~~dG~W~g 492 (635)
T TIGR01507 481 KR-EQEPDGSWFG 492 (635)
T ss_pred HH-ccCCCCCCcc
Confidence 87 6788999865
No 246
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=63.58 E-value=24 Score=39.70 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 590 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~~~leDyA~~ 590 (811)
-.+++||+.|++.-+++ ...|+..|+.+..-++++... .|+..-.. ..|-.......-+-++.
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~llpG~~~f~~~~~~~~npSY~ 179 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVLLPGDWGFNSDDYWTTNPSYF 179 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEECSSSSSCBTTSEEEEEGGGS
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEEeccccccCCCCceEeChhhc
Confidence 67889999999999852 158999999999998887765 34322211 11111111111123444
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 003553 591 I-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 627 (811)
Q Consensus 591 i-~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 627 (811)
+ -++-.++++++|+.|.+.+....+.+.+.. .+..|
T Consensus 180 ~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 180 MPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp -HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 4 777789999999999999998888777665 34444
No 247
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=62.98 E-value=17 Score=31.77 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=23.7
Q ss_pred EEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCc
Q 003553 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP 185 (811)
Q Consensus 141 i~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~p 185 (811)
-++.++.+||++|+...+ .++.=.. .. ..+-...+|.++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~-~L~~l~~--~~-~~i~~~~idi~~~~ 42 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKE-LAEKLSE--ER-DDFDYRYVDIHAEG 42 (85)
T ss_pred EEEEEeCCCChhHHHHHH-HHHhhcc--cc-cCCcEEEEECCCCh
Confidence 356788999999998654 2111000 00 24555667776554
No 248
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=62.73 E-value=8.5 Score=36.80 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=17.5
Q ss_pred cCCcEEEEEcccC-chhhHHh
Q 003553 137 RDVPIFLSIGYST-CHWCHVM 156 (811)
Q Consensus 137 ~~Kpi~l~i~~~~-C~wC~~m 156 (811)
.||+++|.|+++| |..|..-
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e 45 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQ 45 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHH
Confidence 5899999999988 6999974
No 249
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=62.58 E-value=11 Score=37.78 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=29.6
Q ss_pred HHHhhcCCcEEEEEc-ccCchhhHHhhhhcCCCHHHHHHH-hcccEEEEEcCC
Q 003553 132 AEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDRE 182 (811)
Q Consensus 132 ~~Ak~~~Kpi~l~i~-~~~C~wC~~me~e~f~d~eva~~l-n~~fv~vkvD~e 182 (811)
....-.||+++|.|+ ++||..|...-. .| .++++.+ ++++..|-|..+
T Consensus 23 ~l~~~~Gk~vvl~F~~~~~c~~C~~~l~-~l--~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 23 SLSDYKGKWVVLFFYPLDFTFVCPTEII-AF--SDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred ehHHhCCCEEEEEEECCCCCCcCHHHHH-HH--HHHHHHHHHCCCEEEEEecC
Confidence 334446899999999 799999998432 23 2233333 345655555544
No 250
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=62.57 E-value=15 Score=35.39 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=42.7
Q ss_pred hhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhccc-EEEEEcCCCCccHHHHHH
Q 003553 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF-VSIKVDREERPDVDKVYM 192 (811)
Q Consensus 135 k~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~f-v~vkvD~ee~pdi~~~y~ 192 (811)
-.+.|.|.|-||-+|=+-|-.|++- =..+++.+. +| +..-||+++-|+..+.|-
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~---L~~i~~~vs-nfa~IylvdideV~~~~~~~~ 74 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDEL---LSSIAEDVS-NFAVIYLVDIDEVPDFVKMYE 74 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHH---HHHHHHHHh-hceEEEEEecchhhhhhhhhc
Confidence 4578999999999999999999862 235666665 46 555589999999998874
No 251
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=62.34 E-value=29 Score=38.20 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred CCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC
Q 003553 499 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 578 (811)
Q Consensus 499 ~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~ 578 (811)
..-+|+. -...-|.-|+++|+.+++ ++|.+++.+..+||++..+. +||+-..|-....
T Consensus 33 ~~TiDN~----aT~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDND----ATTTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGG----TTHHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccCh----hHHHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 4456666 223457889999999987 89999999999999999886 6877766532111
Q ss_pred -CCCCCcchHH--HHHHHHHHHHHHcCCH
Q 003553 579 -KAPGFLDDYA--FLISGLLDLYEFGSGT 604 (811)
Q Consensus 579 -~~~~~leDyA--~~i~aLL~LYeaTgd~ 604 (811)
...-+..|-| -++.-|.+.++..++-
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 1123344443 4666777777777755
No 252
>PLN02909 Endoglucanase
Probab=62.15 E-value=2.8e+02 Score=32.98 Aligned_cols=119 Identities=10% Similarity=-0.060 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcch-------------------HHHHHHHHHHHHHHc
Q 003553 543 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFG 601 (811)
Q Consensus 543 ~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~leD-------------------yA~~i~aLL~LYeaT 601 (811)
.++.|+.++-..||+++-.. ..|.+++...++..+ .++.+|+ -+.++.+|...+.+.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vf 196 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVF 196 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 37899999999999998653 357888875544211 1111121 234444555555554
Q ss_pred C--CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCch
Q 003553 602 S--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSD 675 (811)
Q Consensus 602 g--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~ 675 (811)
. |+ +.|+.|+++++.++++ .|.|.... ..+.+ .=+-+=.++++-..|++.|++ .
T Consensus 197 k~~D~~yA~~lL~~Ak~~y~fA~~~-----~g~y~~~~-----------~~y~s-~s~y~DEl~WAAawLy~aTgd---~ 256 (486)
T PLN02909 197 RHVDHKYSRRLLNKAKLLFKFAKAH-----KGTYDGEC-----------PFYCS-YSGYNDELLWAATWLYKATKK---Q 256 (486)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-CCCcchHHHHHHHHHHHHhCC---H
Confidence 4 44 4588888888888653 22221100 00000 000023677777788999986 6
Q ss_pred HHHHHHHH
Q 003553 676 YYRQNAEH 683 (811)
Q Consensus 676 ~y~~~A~~ 683 (811)
.|.+.+..
T Consensus 257 ~Yl~~~~~ 264 (486)
T PLN02909 257 MYLKYIKH 264 (486)
T ss_pred HHHHHHHh
Confidence 78876653
No 253
>PLN00119 endoglucanase
Probab=61.65 E-value=3.2e+02 Score=32.51 Aligned_cols=119 Identities=11% Similarity=0.000 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc------------------hH-HHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD------------------DY-AFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~le------------------Dy-A~~i~aLL~LYeaTg 602 (811)
+.+|+.++-..||+++-.. ..+.+++...+|..+ .++.+| |- +.++.+|...+.+..
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6799999999999998763 356777765544221 111111 22 334444555555544
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 003553 603 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 674 (811)
Q Consensus 603 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS--~Nsv~a~~L~rL~~lt~~~~~ 674 (811)
|+ +.|+.|+++++.++++ .|. |....... .+..+| -.-.++++-..|++.||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~-----~g~-y~~~~~~~----------~g~Y~ss~~~DEl~WAAawLY~aTgd--- 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAH-----PGL-YQNSIPNA----------GGFYASSGYEDELLWAAAWLHRATND--- 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCCCC----------CCCCCCCchhhHHHHHHHHHHHHhCC---
Confidence 44 4578888888887663 122 21110000 011111 112577788889999996
Q ss_pred hHHHHHHHH
Q 003553 675 DYYRQNAEH 683 (811)
Q Consensus 675 ~~y~~~A~~ 683 (811)
..|.+.+..
T Consensus 256 ~~Yl~~~~~ 264 (489)
T PLN00119 256 QTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHh
Confidence 789887653
No 254
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.61 E-value=3.5 Score=43.34 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=44.7
Q ss_pred cCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~~ 193 (811)
.+|++++.|.+.||.-|..|+. +| ..+++.. ++...+|++.++.|+|...+.-
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~-v~--~~~~~~~-~~~~~~k~~a~~~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQ-VF--DHLAEYF-KNAQFLKLEAEEFPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHH-HH--HHHHHhh-hhheeeeehhhhhhHHHHHHHH
Confidence 7899999999999999999986 44 3455656 7889999999999999888753
No 255
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=61.23 E-value=14 Score=43.80 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=47.3
Q ss_pred hHHHHHHHhhcCCcE-EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 127 ~~~a~~~Ak~~~Kpi-~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
+++..++.++-+||+ +..|...+|++|...-+ .+ .+ .+..|.+...-.+|..+.|++.+.|
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~-~~--~~-~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ-AL--NL-MAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH-HH--HH-HHHhCCCceEEEEEchhCHhHHHhc
Confidence 588889999999998 56667899999986443 23 22 3446777777778999999999988
No 256
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=60.95 E-value=11 Score=38.29 Aligned_cols=21 Identities=5% Similarity=-0.153 Sum_probs=18.5
Q ss_pred hcCCcEEEEEc-ccCchhhHHh
Q 003553 136 KRDVPIFLSIG-YSTCHWCHVM 156 (811)
Q Consensus 136 ~~~Kpi~l~i~-~~~C~wC~~m 156 (811)
-.||+++|.|+ ++||+.|..-
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~e 50 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTE 50 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHH
Confidence 35899999999 9999999973
No 257
>PLN02613 endoglucanase
Probab=60.76 E-value=3e+02 Score=32.80 Aligned_cols=119 Identities=13% Similarity=-0.016 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCC-------------------cchHHHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGF-------------------LDDYAFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~-------------------leDyA~~i~aLL~LYeaTg 602 (811)
+++|+.++-..||+++-... .+.++....+|... .++. .+--+.++.+|...+.+..
T Consensus 112 ~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk 189 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFK 189 (498)
T ss_pred hHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987643 35666655444211 0011 1112345555555555554
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 003553 603 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 676 (811)
Q Consensus 603 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~ 676 (811)
|+ +.|+.|+++++...+. .|.|.... +.+.+ .=+-.=.++++-..|+..||+ ..
T Consensus 190 ~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~-----------~~y~s-~s~~~DEl~WAAawLy~aTGd---~~ 249 (498)
T PLN02613 190 DVDSSYSSKLLNHARSLFEFADKY-----RGSYQASC-----------PFYCS-YSGYQDELLWAAAWLYKATGE---KK 249 (498)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-cCccchHHHHHHHHHHHHhCC---HH
Confidence 44 4588888888887652 23332210 00000 000012466777789999986 78
Q ss_pred HHHHHHHH
Q 003553 677 YRQNAEHS 684 (811)
Q Consensus 677 y~~~A~~~ 684 (811)
|.+.+...
T Consensus 250 Yl~~~~~~ 257 (498)
T PLN02613 250 YLNYVISN 257 (498)
T ss_pred HHHHHHhc
Confidence 99887653
No 258
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=60.35 E-value=15 Score=31.06 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEE-EEEcCCCCccHHHHH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVY 191 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~-vkvD~ee~pdi~~~y 191 (811)
.-++.++|++|+...+ +|+++-|+ ..+|.++.|+....+
T Consensus 2 ~ly~~~~Cp~C~~ak~----------~L~~~~i~~~~~di~~~~~~~~~~ 41 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKK----------ALEEHGIAFEEINIDEQPEAIDYV 41 (72)
T ss_pred EEEeCCCCHHHHHHHH----------HHHHCCCceEEEECCCCHHHHHHH
Confidence 3577899999999664 44443333 335666666654433
No 259
>PRK10329 glutaredoxin-like protein; Provisional
Probab=60.27 E-value=18 Score=31.87 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEE-EEcCCCCccHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDK 189 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~v-kvD~ee~pdi~~ 189 (811)
+.-++.+||++|+...+ +|.+.-|++ .+|.++.|+...
T Consensus 3 v~lYt~~~Cp~C~~ak~----------~L~~~gI~~~~idi~~~~~~~~ 41 (81)
T PRK10329 3 ITIYTRNDCVQCHATKR----------AMESRGFDFEMINVDRVPEAAE 41 (81)
T ss_pred EEEEeCCCCHhHHHHHH----------HHHHCCCceEEEECCCCHHHHH
Confidence 34567899999998653 344433333 457766676544
No 260
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=59.86 E-value=16 Score=32.27 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=13.5
Q ss_pred EEEEcccCchhhHHhhh
Q 003553 142 FLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~ 158 (811)
++-++.+||++|+.+.+
T Consensus 2 V~vys~~~Cp~C~~ak~ 18 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQ 18 (86)
T ss_pred EEEEeCCCCccHHHHHH
Confidence 34567899999999764
No 261
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=59.81 E-value=9.1 Score=36.40 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCcE-EEEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcCCC
Q 003553 138 DVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE 183 (811)
Q Consensus 138 ~Kpi-~l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ee 183 (811)
+|++ ++.|.++||+.|+....+ + .++.+.+. +++..|-|..+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~-l--~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRA-L--SKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHH-H--HHHHHHHHhcCeEEEEEeCCC
Confidence 4555 455569999999975432 2 12333333 356556565544
No 262
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=59.42 E-value=17 Score=31.55 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=13.7
Q ss_pred EEEEcccCchhhHHhhh
Q 003553 142 FLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~ 158 (811)
++-++.+||++|+...+
T Consensus 10 V~ly~~~~Cp~C~~ak~ 26 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKA 26 (79)
T ss_pred EEEEECCCCHhHHHHHH
Confidence 44678899999999764
No 263
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.13 E-value=16 Score=43.70 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=48.3
Q ss_pred cChHHHHHHHhhcCCcEEEEE-cccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 125 AWGEEAFAEARKRDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 125 ~~~~~a~~~Ak~~~Kpi~l~i-~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.-.++.+++.++-+||+-|.+ ...+|++|....+.. .++ ...|.+...--+|.++.|++.+.|
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~-~~~~~~i~~~~i~~~~~~~~~~~~ 525 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRI-ASLNPNVEAEMIDVSHFPDLKDEY 525 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHH-HHhCCCceEEEEECcccHHHHHhC
Confidence 346888999999999997776 689999999866533 333 334556777778999999999877
No 264
>PRK10824 glutaredoxin-4; Provisional
Probab=57.88 E-value=23 Score=33.61 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCcEEEEE-cc---cCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHH
Q 003553 128 EEAFAEARKRDVPIFLSI-GY---STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK 189 (811)
Q Consensus 128 ~~a~~~Ak~~~Kpi~l~i-~~---~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~ 189 (811)
.+.++..-+++ +|+|.. |. ++|++|+...+ .| .-++-.|..| |.+++|++..
T Consensus 5 ~~~v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~-lL------~~~~i~~~~i--di~~d~~~~~ 60 (115)
T PRK10824 5 IEKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQ-AL------SACGERFAYV--DILQNPDIRA 60 (115)
T ss_pred HHHHHHHHhcC-CEEEEECCCCCCCCCchHHHHHH-HH------HHcCCCceEE--EecCCHHHHH
Confidence 34555666655 454444 32 59999998654 22 2222345444 5555666544
No 265
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=57.69 E-value=14 Score=39.24 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEE
Q 003553 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkv 179 (811)
+..-..++|..++.|+-..|++||+++++ +.++.+.+ |.|++
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~------l~~~~~~~-v~v~~ 141 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQ------MKDYNALG-ITVRY 141 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHH------HHHHhcCC-eEEEE
Confidence 33345578999999999999999999854 55654433 44444
No 266
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=57.26 E-value=5.8 Score=40.06 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCccccChHHHHHHHhhcCCcEEEEEcccCc-hhhHHhhhhcCCCHHHHHHHhc-----ccEEEEEcCC-CCccHHHHHH
Q 003553 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTC-HWCHVMEVESFEDEGVAKLLND-----WFVSIKVDRE-ERPDVDKVYM 192 (811)
Q Consensus 120 ~v~W~~~~~~a~~~Ak~~~Kpi~l~i~~~~C-~wC~~me~e~f~d~eva~~ln~-----~fv~vkvD~e-e~pdi~~~y~ 192 (811)
++.+....-+.+..+.-.||+++|.|+|..| .-|-.+-.. =.++.+.|.+ .||.|-+|-+ ..|++-+.|.
T Consensus 34 ~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~---l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 34 DFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLAN---LSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp T-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHH---HHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHH---HHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3444433333444445579999999999999 578766542 2333444432 4788888865 4577766665
Q ss_pred H
Q 003553 193 T 193 (811)
Q Consensus 193 ~ 193 (811)
.
T Consensus 111 ~ 111 (174)
T PF02630_consen 111 K 111 (174)
T ss_dssp H
T ss_pred H
Confidence 4
No 267
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=57.16 E-value=58 Score=36.31 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=64.3
Q ss_pred hhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE--E--ecCCCCC
Q 003553 506 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH--S--FRNGPSK 579 (811)
Q Consensus 506 iltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~--G~l~~--~--~~~g~~~ 579 (811)
.-|+--|-+|.-++...+.+|+ +-|-+.|+++.+|+++.-....+ |.... + |....+.
T Consensus 182 tctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsg 245 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSG 245 (587)
T ss_pred chhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccC
Confidence 3466668888889999999987 67999999999999876533222 22211 1 2111223
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003553 580 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 620 (811)
Q Consensus 580 ~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 620 (811)
+.+-.+.| -+=+|..|-+-||+.||++-.+-.+.+...
T Consensus 246 igagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 246 IGAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred cCcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 33334444 344567788889999999988887777654
No 268
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=57.12 E-value=11 Score=35.87 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.4
Q ss_pred hcCCcEEEEEcccCchhhHHhhh
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~ 158 (811)
.+.+++++.|+-.+|+||+.|+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~ 25 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAP 25 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhH
Confidence 35778888888899999999974
No 269
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=56.85 E-value=16 Score=36.54 Aligned_cols=21 Identities=19% Similarity=0.002 Sum_probs=18.6
Q ss_pred cCCcEEEEEcccC-chhhHHhh
Q 003553 137 RDVPIFLSIGYST-CHWCHVME 157 (811)
Q Consensus 137 ~~Kpi~l~i~~~~-C~wC~~me 157 (811)
.||+|+|.|+++| |..|....
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~ 64 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSV 64 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHH
Confidence 5899999999999 99999843
No 270
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=56.04 E-value=89 Score=35.77 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEEe-cCCCC
Q 003553 501 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSF-RNGPS 578 (811)
Q Consensus 501 ~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G-~l~~~~-~~g~~ 578 (811)
..|..-=|+---.+.+||++|++.-++ ++|++.|+.++.-|.++...+..| +..-.. ..|-.
T Consensus 108 v~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~ 171 (376)
T PRK11097 108 VLDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFA 171 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeecccccccc
Confidence 345555555667889999999999987 789999999999999887665444 221111 11100
Q ss_pred CCCCCcchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003553 579 KAPGFLDDYAFL-ISGLLDLYEFGSGTKWLVWAIELQNTQDELF 621 (811)
Q Consensus 579 ~~~~~leDyA~~-i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 621 (811)
......-+=++. ...+-.+++++++..|.+.+....+.+.+.-
T Consensus 172 ~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 172 DDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 001110112333 3444556788999999999998888877643
No 271
>PLN02420 endoglucanase
Probab=55.59 E-value=4.4e+02 Score=31.69 Aligned_cols=146 Identities=10% Similarity=0.001 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCC------
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGF------ 583 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~--~~~------ 583 (811)
+..++.|+.++.-+++.- +-.|. .+++|+.++-..||+++-... .+.++....+|..+. ++.
T Consensus 103 a~t~~~L~w~~~ef~d~~-------~~~g~-~~d~Ldeikw~lD~llk~~~~--~~~~~~qvGdg~~DH~~w~~Pe~~~~ 172 (525)
T PLN02420 103 AFTVTMLSWSVIEYGDQL-------ASTGE-LSHALEAIKWGTDYFIKAHTS--PNVLWAEVGDGDTDHYCWQRPEDMTT 172 (525)
T ss_pred HHHHHHHHHHHHHHHHhh-------hhcCC-cHHHHHHHHHHHHHHHHhCcC--CCceEEeeCCCCcccccccChhhccc
Confidence 455555555555554421 11122 478999999999999987643 456666554432100 000
Q ss_pred ------------cchH-HHHHHHHHHHHHHcC--CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003553 584 ------------LDDY-AFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 644 (811)
Q Consensus 584 ------------leDy-A~~i~aLL~LYeaTg--d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k 644 (811)
-.|- +.++.+|...+.+.. |+. .|+.|+++++...+ ..|.| ..+...
T Consensus 173 ~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~-----~~g~y-~~~~~~-------- 238 (525)
T PLN02420 173 SRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDK-----YRGKY-DESLKV-------- 238 (525)
T ss_pred cCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh-----cCCcc-CCCCcc--------
Confidence 1232 334444555555544 454 47888888876653 22333 211100
Q ss_pred CCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003553 645 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 686 (811)
Q Consensus 645 ~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 686 (811)
-.+...| -.-.++++-..|++.||+ ..|.+.+.+...
T Consensus 239 --~~g~Y~s~s~y~DEl~WAAawLY~ATgd---~~Yl~~a~~~~~ 278 (525)
T PLN02420 239 --VKSYYASVSGYMDELLWGATWLYRATDN---EHYMSYVVDMAH 278 (525)
T ss_pred --cCCCCCCcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 0112222 134788888899999996 789988765433
No 272
>PTZ00256 glutathione peroxidase; Provisional
Probab=55.50 E-value=7.6 Score=39.38 Aligned_cols=46 Identities=4% Similarity=-0.076 Sum_probs=25.6
Q ss_pred HHhhcCCcEE-EEEcccCchhhHHhhhhcCCCHHHHHHHh-cccEEEEEcC
Q 003553 133 EARKRDVPIF-LSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDR 181 (811)
Q Consensus 133 ~Ak~~~Kpi~-l~i~~~~C~wC~~me~e~f~d~eva~~ln-~~fv~vkvD~ 181 (811)
.+.-.||+|+ +.+.++||+.|..-.. .++ ++.+... ++|..|=|..
T Consensus 35 Ls~~~Gk~vvlv~n~atwCp~C~~e~p-~l~--~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 35 LSKFKGKKAIIVVNVACKCGLTSDHYT-QLV--ELYKQYKSQGLEILAFPC 82 (183)
T ss_pred HHHhCCCcEEEEEEECCCCCchHHHHH-HHH--HHHHHHhhCCcEEEEEec
Confidence 3344589764 3447999999996332 122 2333333 3565566543
No 273
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=55.04 E-value=87 Score=38.43 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCCCC----------CCCcchHHHHHHHHHHHHHHcC---
Q 003553 544 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSKA----------PGFLDDYAFLISGLLDLYEFGS--- 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l---~d~~~G~l~~~-----~~~g~~~~----------~~~leDyA~~i~aLL~LYeaTg--- 602 (811)
.+.+..+..+.+++.+.+ .+..+.++.+. |.|+...+ ....+=+.+++.+++.+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 567788888888888776 22333344442 22221111 1222234457888888888888
Q ss_pred -CHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003553 603 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 644 (811)
Q Consensus 603 -d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k 644 (811)
-++|.+.|.++.+...+.||.+ .+||+...+++....|+.
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~ 482 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPN 482 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCcc
Confidence 6688899999999999999975 468887766656666653
No 274
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=54.55 E-value=26 Score=29.39 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=13.4
Q ss_pred EEEEcccCchhhHHhhh
Q 003553 142 FLSIGYSTCHWCHVMEV 158 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~ 158 (811)
++-++.++|+||+...+
T Consensus 2 i~ly~~~~Cp~C~~ak~ 18 (75)
T cd03418 2 VEIYTKPNCPYCVRAKA 18 (75)
T ss_pred EEEEeCCCChHHHHHHH
Confidence 35678899999999653
No 275
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=53.28 E-value=1.3e+02 Score=37.97 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.6
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003553 507 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 572 (811)
Q Consensus 507 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~ 572 (811)
+|+|-+++...|++.+..++.+.. ..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 689999999999999999986321 135779999999999999999988866654
No 276
>PRK13270 treF trehalase; Provisional
Probab=52.92 E-value=4.3e+02 Score=31.99 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=78.2
Q ss_pred hhhccHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 003553 506 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 581 (811)
Q Consensus 506 iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~ 581 (811)
+.++-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.||+++.|.++... +.++
T Consensus 347 ipVDLNaiL~~~e~~LA~~a~~lG~~~------------~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~---- 410 (549)
T PRK13270 347 IPIDLNAFLYKLESAIANISALKGEKE------------TEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ---- 410 (549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc----
Confidence 34467888866 5666777777621 12568899999999999999998877665431 2222
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCC--CCChHHHHH
Q 003553 582 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSV 659 (811)
Q Consensus 582 ~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a--~PS~Nsv~a 659 (811)
. + .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.+.. .....-|+. =|-.+-+++
T Consensus 411 --~-~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmii 474 (549)
T PRK13270 411 --L-A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAI 474 (549)
T ss_pred --c-c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHH
Confidence 1 2 25677888888533343 4577777777767754 344433321 112222433 345566677
Q ss_pred HHHHHHH
Q 003553 660 INLVRLA 666 (811)
Q Consensus 660 ~~L~rL~ 666 (811)
..|.+.+
T Consensus 475 eGL~ryG 481 (549)
T PRK13270 475 QGFKMYG 481 (549)
T ss_pred HHHHHcC
Confidence 7776644
No 277
>PLN02175 endoglucanase
Probab=51.91 E-value=4.1e+02 Score=31.61 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc------------------hH-HHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD------------------DY-AFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~le------------------Dy-A~~i~aLL~LYeaTg 602 (811)
+..++..+-..||+++-.. +..|.+++...++..+ .++.+| |- +.++.+|...+.+..
T Consensus 108 ~~~l~~lkw~~Dyllk~~~-~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk 186 (484)
T PLN02175 108 ENARVNIRWATDYLLKCAR-ATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFR 186 (484)
T ss_pred HHHHHHHHHHHHHHHhCcC-CCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 4566767778888887653 3457888875544221 112222 12 334445555555544
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003553 603 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 673 (811)
Q Consensus 603 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 673 (811)
|+. .|+.|+++++.+.+ ..|.|.++.... .. ...+| -+-.++++-..|+..||+
T Consensus 187 ~~D~~YA~~lL~~Ak~ly~fA~~-----~~g~y~~~~~~~------~~----~~Y~s~s~y~DEl~WAAawLY~ATgd-- 249 (484)
T PLN02175 187 KVDSKYSRLLLATAKKVMQFAIQ-----YRGAYSDSLSSS------VC----PFYCSYSGYKDELMWGASWLLRATND-- 249 (484)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHh-----CCCCcccCcccc------cc----CccccCCCccHHHHHHHHHHHHHhCC--
Confidence 554 48888888888875 234454331100 00 01122 134688888899999986
Q ss_pred chHHHHHHHH
Q 003553 674 SDYYRQNAEH 683 (811)
Q Consensus 674 ~~~y~~~A~~ 683 (811)
..|.+.+..
T Consensus 250 -~~Yl~~~~~ 258 (484)
T PLN02175 250 -PYYANFIKS 258 (484)
T ss_pred -HHHHHHHHH
Confidence 788876653
No 278
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=51.46 E-value=22 Score=41.10 Aligned_cols=40 Identities=8% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEE-EcCCCCccHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVY 191 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vk-vD~ee~pdi~~~y 191 (811)
++-++.+||+||+..+ ++|+++-|+.+ +|.++.|+....+
T Consensus 4 V~vys~~~Cp~C~~aK----------~~L~~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK----------SWFGANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHH----------HHHHHCCCCeEEEECCCChhHHHHH
Confidence 4567789999999865 46776554443 5777777665544
No 279
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=49.70 E-value=60 Score=36.94 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=47.1
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCC-CCC---C
Q 003553 508 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS-KAP---G 582 (811)
Q Consensus 508 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~-~~~---~ 582 (811)
.+-|...|-.+.+.++.+||. .| .++....+++++++++. +|+++.++...... ++. +.. |
T Consensus 98 ~D~~~~fVL~vyr~~~~TGD~----~f--------L~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~~G 163 (365)
T PF04685_consen 98 KDLNPKFVLQVYRDYKWTGDR----DF--------LKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSMYG 163 (365)
T ss_dssp -------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EEEE
T ss_pred ccccccccccccccccccccc----hh--------hhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCeeC
Confidence 345688899999999999982 12 14456789999999987 55544344432211 010 111 1
Q ss_pred CcchH-----HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccc
Q 003553 583 FLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 631 (811)
Q Consensus 583 ~leDy-----A~~i~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 631 (811)
..-| ..++.++.++.++-||+ +|.+.+++..+.+++.+|+ |.||.
T Consensus 164 -~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 164 -PSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp -EEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 1122 33566778888888985 6777888888888888995 55776
No 280
>PRK13271 treA trehalase; Provisional
Probab=49.64 E-value=4.3e+02 Score=32.13 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=66.3
Q ss_pred chhhccHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCC
Q 003553 505 KVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKA 580 (811)
Q Consensus 505 KiltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~ 580 (811)
-|-+.-|+++.. .|++.++.+|+.. ...+|.+.|.+..+.|.+.||+++.|.++... .+++
T Consensus 336 IiPVDLNALLy~ae~~LA~la~~lGd~~------------~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~--- 400 (569)
T PRK13271 336 IVPVDLNALMFKMEKILARASKAAGDNA------------MANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK--- 400 (569)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhCChh------------hHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC---
Confidence 344678899876 5566667777621 12468999999999999999998777665432 2222
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 003553 581 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 632 (811)
Q Consensus 581 ~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 632 (811)
.-+ .+.+.+++-||-=.-+ .+.|.++.+.+.++|..+ ||.-.+
T Consensus 401 ---~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpTt 443 (569)
T PRK13271 401 ---VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNTT 443 (569)
T ss_pred ---Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccCC
Confidence 112 3566677777642223 257777887777777653 555443
No 281
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=49.51 E-value=32 Score=33.81 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCcEEEEEcccCchhhHHhhhhc
Q 003553 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (811)
Q Consensus 137 ~~Kpi~l~i~~~~C~wC~~me~e~ 160 (811)
++++.++.|+-..|+||+.|+.++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHH
Confidence 678889999999999999999754
No 282
>PLN03009 cellulase
Probab=49.34 E-value=5.3e+02 Score=30.77 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc----
Q 003553 512 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD---- 585 (811)
Q Consensus 512 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~--~~~~le---- 585 (811)
+..++.|+.++..+++. + |. + ..++.|+.++-..||+++-..+ .|++++...++..+ .++.+|
T Consensus 90 a~s~~~L~w~~~~f~d~-----~--~~-~-~~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~ 158 (495)
T PLN03009 90 AFTTTMLAWSVIEFGDL-----M--PS-S-ELRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDT 158 (495)
T ss_pred HHHHHHHHHHHHHhHhh-----C--Cc-c-ccHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCC
Confidence 44445555555555541 1 11 1 2378999999999999986543 57888876543211 011111
Q ss_pred --------------h-HHHHHHHHHHHHHHcC--CHHH----HHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003553 586 --------------D-YAFLISGLLDLYEFGS--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 644 (811)
Q Consensus 586 --------------D-yA~~i~aLL~LYeaTg--d~~y----L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k 644 (811)
| -+.++.+|...+.+.. |+.| |+.|+++++.+++. .|.|-.... ..+ -..
T Consensus 159 ~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~-~~~---g~~ 229 (495)
T PLN03009 159 PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDD-IKD---GVC 229 (495)
T ss_pred CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCcc-ccC---ccc
Confidence 1 2455555555666654 5554 77888888877642 344432210 000 000
Q ss_pred CCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003553 645 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHS 684 (811)
Q Consensus 645 ~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 684 (811)
...+| -+-.++++-..|+..||+ ..|.+.+...
T Consensus 230 ----~~Y~~~s~~~DE~~WAAawLy~aTgd---~~Yl~~~~~~ 265 (495)
T PLN03009 230 ----PFYCDFDGYQDELLWGAAWLRRASGD---DSYLNYIENN 265 (495)
T ss_pred ----cCcCCcccccHHHHHHHHHHHHHhCC---HHHHHHHHHh
Confidence 01233 235688888899999996 7898887643
No 283
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=49.19 E-value=3.2e+02 Score=32.64 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=56.8
Q ss_pred cchhhccHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCC
Q 003553 504 DKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSK 579 (811)
Q Consensus 504 dKiltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~ 579 (811)
+-|-++-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++... ..+...
T Consensus 303 ~iipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~ 370 (512)
T PF01204_consen 303 DIIPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRS 370 (512)
T ss_dssp CEE-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEG
T ss_pred eecCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCc
Confidence 3344577888865 78888888886321 2579999999999999999999888766542 223221
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003553 580 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 621 (811)
Q Consensus 580 ~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 621 (811)
. .+.+.+++=|+--.-++. .|..+...+.+.+
T Consensus 371 ~-------~~~~a~f~PL~ag~a~~~---qa~~~~~~~l~~~ 402 (512)
T PF01204_consen 371 P-------VFSPANFLPLWAGIASPE---QAERLVARALDYL 402 (512)
T ss_dssp G---------BGGGGHHHHTT-S-HH---HHHHHHHHHHHHC
T ss_pred c-------cccHHHHHHHHHhhcCHh---hhhhHHHHHHHHH
Confidence 1 233345555543333332 3555555555555
No 284
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=49.13 E-value=60 Score=35.26 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003553 301 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 380 (811)
Q Consensus 301 ~~~~~~~~TL~~Ma~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~ 380 (811)
++.+++..-..++.. +-+-+|||-- |....-+--.+..|..+.++.+|..... ....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~~--v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFIY--IDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHH-
Confidence 344444444444432 4456799843 3111123466789999999999874322 335789999999997
Q ss_pred ccCCCCcee
Q 003553 381 MIGPGGEIF 389 (811)
Q Consensus 381 m~~p~Ggfy 389 (811)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899995
No 285
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=48.93 E-value=26 Score=29.99 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=12.6
Q ss_pred EEEcccCchhhHHhhh
Q 003553 143 LSIGYSTCHWCHVMEV 158 (811)
Q Consensus 143 l~i~~~~C~wC~~me~ 158 (811)
.-++.++|++|+...+
T Consensus 2 ~ly~~~~Cp~C~~a~~ 17 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKA 17 (79)
T ss_pred EEEecCCChhHHHHHH
Confidence 3567899999999654
No 286
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=48.84 E-value=71 Score=36.37 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHccCChHHHH----HHHHHHHHHHH
Q 003553 342 KMLYDQGQLANVYLDAFSLTKDVFYSY----ICRDILDYLRR 379 (811)
Q Consensus 342 KMLyDNA~Ll~~ya~Ay~~t~d~~y~~----~A~~t~~fl~~ 379 (811)
.+.-.|...+..-.+.|+.|||..|++ .++++++|+++
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ---------------------------EHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 344348888888889999999988764 68999999998
No 287
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=48.45 E-value=1.7e+02 Score=32.93 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCC----CCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccc
Q 003553 551 ESAASFIRRHLYDEQTHRLQHSFRNGPSKA----PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 624 (811)
Q Consensus 551 ~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~----~~~leDyA~~i~aLL~LYeaTg--d~~yL~~A~~L~~~~~~~F~D~ 624 (811)
.++..|.++|+..+++|.+-|.+..+.... ..=.|+=-..+.|||...+..| ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 457788888987556677777765443211 1234455688999999999999 558999999999998777654
Q ss_pred CCCcccccCCCC-----CcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003553 625 EGGGYFNTTGED-----PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 692 (811)
Q Consensus 625 ~~Ggyf~t~~~~-----~~li~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 692 (811)
.|.+...+.+. ...++ .||=- +.-.+..++.++++ ..|.+.++..++.+....
T Consensus 154 -~g~~~llpG~~~f~~~~~~~~---------npSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGFNSDDYWTT---------NPSYF--MPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSCBTTSEEEE---------EGGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCCCCceEe---------Chhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 34333333211 11111 23332 22446688899885 679888887777655433
No 288
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=47.82 E-value=20 Score=37.46 Aligned_cols=60 Identities=32% Similarity=0.473 Sum_probs=40.2
Q ss_pred HHHHHhhcCCcEEEEEcccCchh-hHHhhhhcCCCHHHHHHHh----c--ccEEEEEcCC-CCccHHHHHH
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN----D--WFVSIKVDRE-ERPDVDKVYM 192 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~w-C~~me~e~f~d~eva~~ln----~--~fv~vkvD~e-e~pdi~~~y~ 192 (811)
.+....-+|||.+|.|+|..|+- |..+-. +-..+.+.+. . .+|.|.||-| .-|++-+.|-
T Consensus 59 ~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~---~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 59 PFTLKDLKGKPSLVFFGYTHCPDVCPTTLA---ELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred EeeccccCCCEEEEEeecCCCCccChHHHH---HHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 33444458999999999999984 888654 3344444444 2 3578888864 3377777663
No 289
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=47.72 E-value=30 Score=40.92 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=46.9
Q ss_pred cChHHHHHHHhhcCCcE-EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHH
Q 003553 125 AWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY 191 (811)
Q Consensus 125 ~~~~~a~~~Ak~~~Kpi-~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y 191 (811)
.-+++.+++.++-+||+ +.-|....|++|...-+ .+ .-.+..|.+...-.+|..+.|++...|
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~~id~~~~~~~~~~~ 166 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHTMIDGALFQDEVEAL 166 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEEEEEchhCHHHHHhc
Confidence 34588889999989998 56667899999986433 22 333445666666668999999999888
No 290
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=46.96 E-value=3.5e+02 Score=32.91 Aligned_cols=138 Identities=11% Similarity=0.092 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC
Q 003553 548 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 626 (811)
Q Consensus 548 e~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 626 (811)
+.|+++.....+.+. +|.+-..+.+ |....-+..|---+++.++-++++.|+|..+++.-...+..+++.+.+..+
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~ 389 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGND 389 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555555444442 3554443332 221222345556789999999999999998886555555555554443211
Q ss_pred CcccccCCCCCccc-----ccccCC---------CCCCCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHH
Q 003553 627 GGYFNTTGEDPSVL-----LRVKED---------HDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFE 689 (811)
Q Consensus 627 Ggyf~t~~~~~~li-----~R~k~~---------~D~a~PS~Nsv~a~~L~r---L~~lt~~~~~~~y~~~A~~~l~~~~ 689 (811)
|-...+.+ .++ +.+++. -+|+.---|+.+..+|.. |+...|+. ...|.+.|+++-+.|.
T Consensus 390 --~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 390 --FAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred --cEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 11000000 111 112222 223333456777777665 44445542 2568888877777765
Q ss_pred HHH
Q 003553 690 TRL 692 (811)
Q Consensus 690 ~~i 692 (811)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 443
No 291
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=33 Score=30.14 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=12.3
Q ss_pred EEEcccCchhhHHhhh
Q 003553 143 LSIGYSTCHWCHVMEV 158 (811)
Q Consensus 143 l~i~~~~C~wC~~me~ 158 (811)
+-++-++|+||+...+
T Consensus 4 ~iyt~~~CPyC~~ak~ 19 (80)
T COG0695 4 TIYTKPGCPYCKRAKR 19 (80)
T ss_pred EEEECCCCchHHHHHH
Confidence 4466799999998653
No 292
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=46.19 E-value=5.3e+02 Score=30.25 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=90.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhcCCC--CCCCCcchhhccHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 003553 469 ASKLGMPLEKYLNILGECRRKLFDVRSKRP--RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 546 (811)
Q Consensus 469 a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~--~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~y 546 (811)
+..+..+.+.+.+..+.++..++..-..-+ =|.+|++ ..|.|=+......++-.+++ .
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~-- 168 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------A-- 168 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------H--
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------H--
Confidence 344556677788877888777765433221 2777666 34666553333333333443 2
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccC
Q 003553 547 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 625 (811)
Q Consensus 547 le~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA-~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~ 625 (811)
+..++..+.+...... +|.+....-... ......-+|+ +.+..+-++|..|||..+++..-...+..++.+....
T Consensus 169 -~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~ 244 (509)
T PF05592_consen 169 -ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRV 244 (509)
T ss_dssp -HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB
T ss_pred -HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2444444444444432 455443211100 1112233453 5778999999999999988766555555555443222
Q ss_pred CC------cccccCCCCCcccccccCCCCCCCC---ChHHHHHHH---HHHHHHHhCCC-CchHHHHHHHHHHHHHHHHH
Q 003553 626 GG------GYFNTTGEDPSVLLRVKEDHDGAEP---SGNSVSVIN---LVRLASIVAGS-KSDYYRQNAEHSLAVFETRL 692 (811)
Q Consensus 626 ~G------gyf~t~~~~~~li~R~k~~~D~a~P---S~Nsv~a~~---L~rL~~lt~~~-~~~~y~~~A~~~l~~~~~~i 692 (811)
.. .+-...+..+. ...+...| ..|+..+.. +.+|+.+.|++ ....|+++|+++-+.+...+
T Consensus 245 ~~~~~~~~~~~~~DW~~~~------~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~ 318 (509)
T PF05592_consen 245 DDGLDGLPGWGFGDWLAPG------NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHF 318 (509)
T ss_dssp -TSSB-CCSB--S-SS----------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccCCCCCceeecCCcc------CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 01111110000 01111112 145544444 55778888752 12468888887777766544
Q ss_pred H
Q 003553 693 K 693 (811)
Q Consensus 693 ~ 693 (811)
-
T Consensus 319 ~ 319 (509)
T PF05592_consen 319 W 319 (509)
T ss_dssp E
T ss_pred c
Confidence 3
No 293
>PTZ00062 glutaredoxin; Provisional
Probab=44.97 E-value=46 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHhhcCCcEEEEE-cc---cCchhhHHhhhhcCCCHHHHHHHhcccEE-EEEcCCCCccHHHHHH
Q 003553 131 FAEARKRDVPIFLSI-GY---STCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYM 192 (811)
Q Consensus 131 ~~~Ak~~~Kpi~l~i-~~---~~C~wC~~me~e~f~d~eva~~ln~~fv~-vkvD~ee~pdi~~~y~ 192 (811)
+++.-+ .+||+|.. |. ++|++|+... ++|++.-|. ..+|.++++++.+...
T Consensus 106 v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k----------~~L~~~~i~y~~~DI~~d~~~~~~l~ 161 (204)
T PTZ00062 106 IERLIR-NHKILLFMKGSKTFPFCRFSNAVV----------NMLNSSGVKYETYNIFEDPDLREELK 161 (204)
T ss_pred HHHHHh-cCCEEEEEccCCCCCCChhHHHHH----------HHHHHcCCCEEEEEcCCCHHHHHHHH
Confidence 444444 56666655 32 5899999865 456553222 3467777777755443
No 294
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=44.44 E-value=29 Score=37.30 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHhhcCCcEEEEEcccCchhhHHhhhh
Q 003553 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVE 159 (811)
Q Consensus 130 a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e 159 (811)
++..-..+.|.+++.|+-..|++||++.++
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~ 138 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ 138 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH
Confidence 344445677888999999999999999874
No 295
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=44.20 E-value=21 Score=36.40 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCC
Q 003553 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFE 162 (811)
Q Consensus 129 ~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~ 162 (811)
.++...+.++|+.++.|+-..|++|+.++++..+
T Consensus 68 ~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 68 DAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred cCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 3455556678999999999999999999986543
No 296
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=44.11 E-value=1.9e+02 Score=31.70 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 003553 248 NALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 327 (811)
Q Consensus 248 ~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgGGF~ 327 (811)
..+.++++-|.+..++ .+.|..+.++.+.....++ ....-+..-|..|+. .|. ++|+.
T Consensus 170 ~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~--------~~~~~a~~~L~~~~~---~d~-~~~~~ 227 (297)
T cd02896 170 QSIRKAISYLENQLPN----------LQRPYALAITAYALALADS--------PLSHAANRKLLSLAK---RDG-NGWYW 227 (297)
T ss_pred HHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCC--------hhhHHHHHHHHHHhh---hCC-Cccee
Confidence 4577888888876654 2344444444444433221 123334455666653 222 22222
Q ss_pred EEEcCCCCCCCCCc-hhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 003553 328 RYSVDERWHVPHFE-KMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 393 (811)
Q Consensus 328 RYsvD~~W~vPHFE-KMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~D 393 (811)
--+.+..|..+.-. .-+---|..|.++... ++. ..|..++.||.+.- ..+|||.|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~vE~TAYALLall~~----~~~---~~a~~iv~WL~~qr-~~~Ggf~sTQd 286 (297)
T cd02896 228 WTIDSPYWPVPGPSAITVETTAYALLALLKL----GDI---EYANPIARWLTEQR-NYGGGFGSTQD 286 (297)
T ss_pred ccCcCccCCCCCCchhhhHHHHHHHHHHHhc----CCc---hhHHHHHHHHHhcC-CCCCCeehHHH
Confidence 12344455433221 1222233344444433 332 36889999999864 56899999887
No 297
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=43.94 E-value=44 Score=28.11 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=12.3
Q ss_pred EEEcccCchhhHHhh
Q 003553 143 LSIGYSTCHWCHVME 157 (811)
Q Consensus 143 l~i~~~~C~wC~~me 157 (811)
+-|+.+||++|+...
T Consensus 4 ~lys~~~Cp~C~~ak 18 (72)
T cd03029 4 SLFTKPGCPFCARAK 18 (72)
T ss_pred EEEECCCCHHHHHHH
Confidence 456789999999964
No 298
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=43.78 E-value=29 Score=30.33 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=32.9
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHH-HhcccEEEEEcCCCCccHHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKL-LNDWFVSIKVDREERPDVDKVYM 192 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~-ln~~fv~vkvD~ee~pdi~~~y~ 192 (811)
++.++.+.||-|..++. .+.++ .+..|....||.++.|++-..|+
T Consensus 2 l~l~~k~~C~LC~~a~~------~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~ 47 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKE------ILEEVAAEFPFELEEVDIDEDPELFEKYG 47 (81)
T ss_dssp EEEEE-SSSHHHHHHHH------HHHHCCTTSTCEEEEEETTTTHHHHHHSC
T ss_pred EEEEcCCCCChHHHHHH------HHHHHHhhcCceEEEEECCCCHHHHHHhc
Confidence 45688999999999774 23332 23468889999999999888774
No 299
>PRK13271 treA trehalase; Provisional
Probab=40.85 E-value=65 Score=38.88 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccCC
Q 003553 593 GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 634 (811)
Q Consensus 593 aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 634 (811)
-|.++++..|+. .|.++|.++.+.+.+.|||++.|.||+...
T Consensus 351 ~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 351 ILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 344566777765 688999999999999999999898988653
No 300
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=39.71 E-value=36 Score=34.99 Aligned_cols=43 Identities=9% Similarity=-0.056 Sum_probs=27.3
Q ss_pred cCCcEEEEEc-ccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcC
Q 003553 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (811)
Q Consensus 137 ~~Kpi~l~i~-~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ 181 (811)
.||+|+|.|+ ++||..|.. |-..|. ....++-..++..|=|..
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~-el~~l~-~~~~~f~~~g~~vigIS~ 73 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPT-ELGDVA-DHYEELQKLGVDVYSVST 73 (187)
T ss_pred CCCeEEEEEECCCCCCcCHH-HHHHHH-HHHHHHHhCCCEEEEEeC
Confidence 5899999999 999999998 333343 222333334555555544
No 301
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=39.25 E-value=65 Score=33.27 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=32.2
Q ss_pred CCcEEEEEcccCchhhHHhhhhcC-CCHHHHHHHhcccEEEEEcC
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESF-EDEGVAKLLNDWFVSIKVDR 181 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f-~d~eva~~ln~~fv~vkvD~ 181 (811)
+||-+|.|+.-.|++|..++. ++ ..+.+.+.+.++-..+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecc
Confidence 577799999999999999997 44 45788888876544444444
No 302
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=39.08 E-value=49 Score=26.03 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=25.3
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLF 491 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 491 (811)
+..++|+.+|++...+......+.++|+
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR 49 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLR 49 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999986
No 303
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=38.33 E-value=7.8 Score=35.25 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003553 350 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 389 (811)
Q Consensus 350 Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfy 389 (811)
....++.++...+++.+.+.++++++||++.. .++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 33444455555678889999999999999955 6789884
No 304
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=37.90 E-value=45 Score=32.16 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=29.4
Q ss_pred hcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcC
Q 003553 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ 181 (811)
...+++++.|+-..|++|..|+.+.. +-+.+++++ .+..+.++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCCceEEEEEEc
Confidence 45678888999999999999998775 555555444 333333343
No 305
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=36.69 E-value=69 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=26.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+..++|+.+|++.+.+.+....++++|+.
T Consensus 198 t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 198 TLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999985
No 306
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=36.56 E-value=2.5e+02 Score=32.25 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=70.2
Q ss_pred cHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec------CCCC
Q 003553 510 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR------NGPS 578 (811)
Q Consensus 510 WNal~-----I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~------~g~~ 578 (811)
|-.-| |+-|++||..++| +.||..|.++..-- .+... +|+....+- ..-|
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~py--k~~S~-dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPY--KINSS-DGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCe--EeecC-CCceEEEEccccchhhhcC
Confidence 76665 8999999999988 78998888766321 22232 344443332 2223
Q ss_pred CCC--CCcchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-------HHHHccccCCCcccccCC---CCCccccccc
Q 003553 579 KAP--GFLDDYAFLISGLLDLYEF--GSGTKWLVWAIELQNT-------QDELFLDREGGGYFNTTG---EDPSVLLRVK 644 (811)
Q Consensus 579 ~~~--~~leDyA~~i~aLL~LYea--Tgd~~yL~~A~~L~~~-------~~~~F~D~~~Ggyf~t~~---~~~~li~R~k 644 (811)
..+ =.+..+. +.|+-||.+ |--.+--+.|.+|... |+- .+|.-+|.-|+--. .-.+-+.|+
T Consensus 479 TTP~SfVLNGF~---YSLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APNLARW- 553 (594)
T KOG3760|consen 479 TTPGSFVLNGFL---YSLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPNLARW- 553 (594)
T ss_pred CCCcceeehhHH---HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcccccc-
Confidence 222 2344454 445555544 2223333455555543 322 34766666665321 111112232
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003553 645 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAE 682 (811)
Q Consensus 645 ~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~ 682 (811)
| -.+.-+..|..|+.+-. ++-..+-|+
T Consensus 554 ---D-----YHatHvnqL~llatId~---dpv~~~ta~ 580 (594)
T KOG3760|consen 554 ---D-----YHATHVNQLKLLATIDK---DPVLSKTAD 580 (594)
T ss_pred ---h-----hhhHHHHHHHHHhhccc---cHHHHHHHH
Confidence 1 12455556667777643 354444444
No 307
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.42 E-value=62 Score=31.21 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=29.0
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEE-EEEcCCCCccHHHHHHHHHHHh
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQAL 198 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~-vkvD~ee~pdi~~~y~~~~q~~ 198 (811)
+..++.++|++|+.-. ++|+++=|. ..+|..+.|.-..-....++.+
T Consensus 2 i~iY~~~~C~~C~ka~----------~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK----------AWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 3456889999999843 677764443 3467665555444444555544
No 308
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.39 E-value=4.7e+02 Score=32.01 Aligned_cols=230 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHH--HHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcc------
Q 003553 249 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMM--LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHD------ 320 (811)
Q Consensus 249 ~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~L--l~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D------ 320 (811)
.+..-.-.+....|..-|++-.+|-+|.|....-. .++-.--. ...+..++..-|..+
T Consensus 245 ~~~rS~l~l~~~~~~~~G~ivAs~t~~l~~~~~g~~dY~y~W~RD--------------~~~~~~AL~~~G~~~~a~~~f 310 (612)
T COG3387 245 ALYRSALVLKALNYNPTGAIVASPTTSLPELIGGTRDYRYVWPRD--------------ASYAALALLAIGYKKEALRFF 310 (612)
T ss_pred HHHHHHHHHHHcccCCCCcEEEcCCCCccccCCCCCCceEEccCc--------------HHHHHHHHHHcCCHHHHHHHH
Q ss_pred ----cCCCc----EEEEEcCCC-----CCC-----CCCchhHHHHHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHH
Q 003553 321 ----HVGGG----FHRYSVDER-----WHV-----PHFEKMLYDQGQLANVYLDAFSLTKD-----VFYSYICRDILDYL 377 (811)
Q Consensus 321 ----~vgGG----F~RYsvD~~-----W~v-----PHFEKMLyDNA~Ll~~ya~Ay~~t~d-----~~y~~~A~~t~~fl 377 (811)
++..+ +++|++|.. |+. --|..++=..|...++...-+...++ ..+...+....+|+
T Consensus 311 ~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (612)
T COG3387 311 EFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYL 390 (612)
T ss_pred HHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q ss_pred HH------hccCCCCceeeeccCCcccccCcccccCCceeeecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCC
Q 003553 378 RR------DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHN 451 (811)
Q Consensus 378 ~~------~m~~p~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~y~l~~~Gn~e~~~~~dp~~ 451 (811)
.+ .+..|+.++.= +.+.++.+|
T Consensus 391 ~~~~~~~~~~~~p~~~~WE---------------er~g~~~yt------------------------------------- 418 (612)
T COG3387 391 RRMEKIKANLPTPDFDLWE---------------ERGGHFTYT------------------------------------- 418 (612)
T ss_pred HHHHhhhcCCCCCccceec---------------ccCCcccch-------------------------------------
Q ss_pred CCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHHHhhhhhhh
Q 003553 452 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAES 531 (811)
Q Consensus 452 ~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~ 531 (811)
..|.|.||..++.+....-..+..
T Consensus 419 ------------------------------------------------------~~~~~agLd~A~~lA~~~gd~~~a-- 442 (612)
T COG3387 419 ------------------------------------------------------KATVYAGLDAAADLAEEFGDKGSA-- 442 (612)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHhCCcHHH--
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH--HHHHHHHHHHHHHcCCHHHHHH
Q 003553 532 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY--AFLISGLLDLYEFGSGTKWLVW 609 (811)
Q Consensus 532 ~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDy--A~~i~aLL~LYeaTgd~~yL~~ 609 (811)
+.|...|.++.+.+.++++..++|.+.+.+.+ .+++. |.+....+=-+--..|++.+..
T Consensus 443 ------------~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~-------~~~~~vDasll~l~~fg~i~~~D~~~~~t 503 (612)
T COG3387 443 ------------EHWRKTADELKEAVLRRGYAEDGGYFVRSLGR-------KPDDTVDASLLGLVLFGFIPPDDPRILAT 503 (612)
T ss_pred ------------HHHHHHHHHHHHHHHHhcccccCCeeehhcCC-------CccccccHHHhhccccCccCCCCHHHHHH
Q ss_pred HHHHHHHHHH
Q 003553 610 AIELQNTQDE 619 (811)
Q Consensus 610 A~~L~~~~~~ 619 (811)
.+++.+.+..
T Consensus 504 ~~~I~~~L~~ 513 (612)
T COG3387 504 VEAIERELLV 513 (612)
T ss_pred HHHHHHHHhh
No 309
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=35.96 E-value=19 Score=38.79 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=18.7
Q ss_pred hcCCcEEEEEcccCchhhHH
Q 003553 136 KRDVPIFLSIGYSTCHWCHV 155 (811)
Q Consensus 136 ~~~Kpi~l~i~~~~C~wC~~ 155 (811)
..|||.++.+|+.||+.|-.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~ 75 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAA 75 (249)
T ss_pred CCCeeEEEEEecccCccchh
Confidence 67999999999999999976
No 310
>PF13728 TraF: F plasmid transfer operon protein
Probab=33.71 E-value=83 Score=33.05 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhc-ccEEEEEcCCC
Q 003553 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE 183 (811)
Q Consensus 138 ~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~-~fv~vkvD~ee 183 (811)
++-=|+.|+.+.|..||.+.. -|..+-++ +|-.+-|+.+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~p------il~~~~~~yg~~v~~vs~DG 160 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAP------ILQQFADKYGFSVIPVSLDG 160 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHH------HHHHHHHHhCCEEEEEecCC
Confidence 566678888999999999864 34443333 44444455543
No 311
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=7e+02 Score=27.45 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccc
Q 003553 551 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 630 (811)
Q Consensus 551 ~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 630 (811)
..+.-||.+.... .|+| +|.| --+.|-.|--+.|..|- +-|...|.+++ +|.+++.. .-|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~-cQd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILA-CQDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHh-cCCCCCCCcC
Confidence 3456677666543 4555 3443 33566666666666664 44777888764 46666654 3477889998
Q ss_pred ccCCC
Q 003553 631 NTTGE 635 (811)
Q Consensus 631 ~t~~~ 635 (811)
+.+.+
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 86653
No 312
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=31.95 E-value=6.4e+02 Score=26.70 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003553 341 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 376 (811)
Q Consensus 341 EKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~f 376 (811)
-+-+..-|..+...+.+|.+|||+.|.+.|.++++-
T Consensus 52 ~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~~ 87 (272)
T PF05426_consen 52 YSRLQRDADAAYALALAYYLTGDEKYADKAAEILNA 87 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555677889999999999999998877666543
No 313
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=30.35 E-value=88 Score=37.28 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=37.0
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003553 425 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 493 (811)
Q Consensus 425 ~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~ 493 (811)
+..++..+||+.... + .+..+++..+|++.+.+.+.-.++..||+..
T Consensus 452 Er~VI~lRyGL~~~e---------------~-------~TL~EIa~~lGVSrERVRQIe~kAL~KLR~~ 498 (509)
T PRK05901 452 EAGVIRMRFGLTDGQ---------------P-------KTLDEIGQVYGVTRERIRQIESKTLRKLRHP 498 (509)
T ss_pred HHHHHHHHhhccCCC---------------C-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 467888889985311 1 2467899999999999999999999999853
No 314
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=29.96 E-value=2.7e+02 Score=35.27 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcC--CH--HHHHHHHHHHHHHHHHccccCCCcccccCCC
Q 003553 588 AFLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGE 635 (811)
Q Consensus 588 A~~i~aLL~LYeaTg--d~--~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~ 635 (811)
|++...++++...-+ |+ +|.+.+..|.+.+.+..||++.|.||+....
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~ 616 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLH 616 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccc
Confidence 445555555555444 33 4559999999999999999999999986543
No 315
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=28.89 E-value=88 Score=37.28 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccCC
Q 003553 591 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 634 (811)
Q Consensus 591 i~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 634 (811)
...|..+++..|+. .|.++|.++.+.|.+.|||++.|.||+-.-
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~ 364 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDL 364 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeC
Confidence 34556778888865 789999999999999999999999998653
No 316
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=28.09 E-value=1.2e+02 Score=32.99 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 523 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 523 (811)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+..+. +.-++.++..|.+
T Consensus 126 s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~-~~~~~~~------~~~~~~~f~~a~~ 178 (281)
T TIGR02957 126 PYEEIASIVGKSEANCRQLVSRARRHLDARRPR-FEVSREE------SRQLLERFVEAAQ 178 (281)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCCChHH------HHHHHHHHHHHHH
Confidence 356899999999999999999999999875432 1121111 2456777777765
No 317
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=28.07 E-value=78 Score=25.07 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.5
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKL 490 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L 490 (811)
+..++|+.+|+++..+...+..++++|
T Consensus 28 s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 28 SYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 346899999999999999999998876
No 318
>PRK15000 peroxidase; Provisional
Probab=28.04 E-value=45 Score=34.54 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=27.8
Q ss_pred cCCcEEEEEcc-cCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCC
Q 003553 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (811)
Q Consensus 137 ~~Kpi~l~i~~-~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~e 182 (811)
.||+|+|.|+. +||..|..- -..|++ ...++-++++..|-|..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~E-l~~l~~-~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSE-LIAFDK-RYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHH-HHHHHH-HHHHHHHCCCEEEEEECC
Confidence 58999999999 599999983 333432 222333345655555544
No 319
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.46 E-value=75 Score=28.99 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=24.7
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhccc-EEEEEcCCCCccHHHHHHHHHH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF-VSIKVDREERPDVDKVYMTYVQ 196 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~f-v~vkvD~ee~pdi~~~y~~~~q 196 (811)
..++.++|.+|+... ++|+++= -...+|..+.|.-..-.....+
T Consensus 2 ~iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 2 TIYGNPNCSTSRKAL----------AWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred EEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 357889999999854 4555422 2334565554444333344433
No 320
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=27.37 E-value=1.9e+02 Score=34.60 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHH---HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe---cCCCCCC--
Q 003553 509 SWNGLVISSFAR---ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF---RNGPSKA-- 580 (811)
Q Consensus 509 sWNal~I~ALa~---A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~~---~~g~~~~-- 580 (811)
.|=||-.|.+-| .|-++|| ++....-.+-+.|++.+..-..+|.+..-. =.|+|+.
T Consensus 404 ~WfG~Q~Wsm~R~AeyYy~tGd----------------~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~WSGqPDtW~ 467 (619)
T PF02011_consen 404 RWFGMQAWSMERVAEYYYETGD----------------ARAKAILDKWVAWALSNTTVNSDGTFEIPSTLEWSGQPDTWT 467 (619)
T ss_dssp TBTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEEEES-----T
T ss_pred CcccccchhHHHHHHHHHHhcc----------------HHHHHHHHHHHHHHHhhceeCCCCcEecCCCCcccCCCCCcc
Confidence 488888886555 4556777 566777778888888875433345433210 0244421
Q ss_pred ---------C----CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC
Q 003553 581 ---------P----GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 626 (811)
Q Consensus 581 ---------~----~~leDy---A~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 626 (811)
. ..-.|- +.++.+|+-....+|+...++.|++|++.+.+...|..+
T Consensus 468 ~s~t~N~nLHV~V~~yg~DvGva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~~D~~G 529 (619)
T PF02011_consen 468 GSPTGNPNLHVTVTDYGQDVGVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNYQDDKG 529 (619)
T ss_dssp TS----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCECTTC
T ss_pred CCCCCCCceEEEEecCCCchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCCc
Confidence 1 111232 567888888888999999999999999999998877543
No 321
>PRK05949 RNA polymerase sigma factor; Validated
Probab=27.17 E-value=1.7e+02 Score=32.73 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=36.8
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 425 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 425 ~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+..++.-.||+.... + .+.+++|+.+|++.+.+++.+..++++|++
T Consensus 271 er~Vi~lr~gl~~~e---------------~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGK---------------E-------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456778888885322 1 246789999999999999999999999986
No 322
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.11 E-value=89 Score=25.68 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003553 463 NDSSASASKLGMPLEKYLNILGECRRKLF 491 (811)
Q Consensus 463 ~~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 491 (811)
.+..++|+.+|++...+.+.|..+-++|.
T Consensus 24 ~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 24 ITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999988875
No 323
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=27.05 E-value=48 Score=34.02 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=17.8
Q ss_pred hcCCcEEEEEcc-cCchhhHHhh
Q 003553 136 KRDVPIFLSIGY-STCHWCHVME 157 (811)
Q Consensus 136 ~~~Kpi~l~i~~-~~C~wC~~me 157 (811)
-.||+++|.|+. +||.+|..-.
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~ 56 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEI 56 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHH
Confidence 358999998885 8899998744
No 324
>PRK13190 putative peroxiredoxin; Provisional
Probab=26.87 E-value=48 Score=34.28 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.0
Q ss_pred cCCcEEE-EEcccCchhhHHh
Q 003553 137 RDVPIFL-SIGYSTCHWCHVM 156 (811)
Q Consensus 137 ~~Kpi~l-~i~~~~C~wC~~m 156 (811)
.||+++| ++.++||..|..-
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~E 46 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTE 46 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHH
Confidence 5787766 6899999999863
No 325
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=26.15 E-value=1.8e+02 Score=32.30 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.7
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+.+++++.+|++.+.+++....++.+|++
T Consensus 278 Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 278 TLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999985
No 326
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=25.94 E-value=1.7e+02 Score=31.14 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcE
Q 003553 247 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGF 326 (811)
Q Consensus 247 ~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~Ma~GGi~D~vgGGF 326 (811)
...++++..-|.+. .++...|..+.++-+.....+ +......+...|+.++. .+ +|+.
T Consensus 112 ~~~i~kA~~~L~~~----------~~~~~~~Y~lAl~aYAL~la~-------~~~~~~~~~~~L~~~a~---~~--~~~~ 169 (246)
T PF07678_consen 112 ENAINKALNYLERH----------LDNIQDPYTLALVAYALALAG-------DSPQASKLLNKLNSMAT---TE--GGLR 169 (246)
T ss_dssp HHHHHHHHHHHHHH----------HGCTSSHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHCHCE---ET--TTTC
T ss_pred HHHHHHHHHHHHHh----------ccccCCHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHhhh---hc--cccC
Confidence 56678888888765 355666776666655544321 12334445555666654 22 4443
Q ss_pred EEEEcCCCCCCCC---C-chh--HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 003553 327 HRYSVDERWHVPH---F-EKM--LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 393 (811)
Q Consensus 327 ~RYsvD~~W~vPH---F-EKM--LyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~p~Ggfysa~D 393 (811)
| ...+.....+. + ..- +=-.|..|.++.+. ++ ...+..+++||.+.- .+.|||.|++|
T Consensus 170 ~-W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~----~~---~~~~~~iv~WL~~qr-~~~Ggf~STQd 233 (246)
T PF07678_consen 170 Y-WSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR----GD---LEEASPIVRWLISQR-NSGGGFGSTQD 233 (246)
T ss_dssp E-E-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHCT-TTTSSTSSHHH
T ss_pred c-ccCCcccccccccccccchHHHHHHHHHHHHHHhc----cc---HHHHHHHHHHHHHhc-CCCCccCcHHH
Confidence 3 34444333222 1 110 11134444444443 44 356889999999855 56899999876
No 327
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=24.94 E-value=2e+02 Score=32.17 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=26.1
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+..++++.+|++.+.+.+.-.++.+||+.
T Consensus 284 Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~ 312 (324)
T PRK07921 284 TLDQIGKLFGLSRERVRQIEREVMSKLRN 312 (324)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999975
No 328
>PLN02340 endoglucanase
Probab=24.86 E-value=1.4e+03 Score=28.20 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCc------------------chH-HHHHHHHHHHHHHcC
Q 003553 544 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFL------------------DDY-AFLISGLLDLYEFGS 602 (811)
Q Consensus 544 ~~yle~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~--~~~l------------------eDy-A~~i~aLL~LYeaTg 602 (811)
+++|+.++-..||+++-... .+.|+....+|..+. +..+ .|- +.++.+|...+.+..
T Consensus 116 ~~~ldeirw~~Dyllk~~~~--~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk 193 (614)
T PLN02340 116 QRTLWAIRWGTDYFIKAHTQ--PNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFK 193 (614)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987543 456776655542110 0001 111 233334444444433
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChH--HHHHHHHHHHHHHhCCCCc
Q 003553 603 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLASIVAGSKS 674 (811)
Q Consensus 603 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~li~R~k~~~D~a~PS~N--sv~a~~L~rL~~lt~~~~~ 674 (811)
|+. .|+.|+++++.+++. .|.|-..... -.+..+|.. =.++++-..|++.||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~s~~~-----------a~~~Y~ss~~~DEl~WAAawLy~ATgd--- 254 (614)
T PLN02340 194 PYNSSYSDLLLVHAKQLFSFADKF-----RGLYDDSIQN-----------AKKFYTSSGYSDELLWAAAWLYRATGD--- 254 (614)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCc-----------cccCCCCCCcchHHHHHHHHHHHHhCC---
Confidence 554 588888888887652 2333111000 011223311 2577788889999996
Q ss_pred hHHHHHHHHH
Q 003553 675 DYYRQNAEHS 684 (811)
Q Consensus 675 ~~y~~~A~~~ 684 (811)
..|.+.+...
T Consensus 255 ~~Yl~~~~~~ 264 (614)
T PLN02340 255 EYYLKYVVDN 264 (614)
T ss_pred HHHHHHHHHH
Confidence 7899887654
No 329
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=24.77 E-value=1.6e+02 Score=34.24 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 417 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 417 Ei~~~L~----~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+|..+|. .+..++.-.|++..+.. .+.+++++.+|++.+.+++.+..++.+|++
T Consensus 343 ~L~~~L~~L~~reR~VI~LRygl~d~~~----------------------~Tl~EIA~~LGvS~erVRqie~rAl~KLR~ 400 (415)
T PRK07598 343 DLQHLLADLTSRERDVIRMRFGLADGHT----------------------YSLAEIGRALDLSRERVRQIESKALQKLRQ 400 (415)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 3555554 34567777788753221 246789999999999999999999999985
Q ss_pred h
Q 003553 493 V 493 (811)
Q Consensus 493 ~ 493 (811)
.
T Consensus 401 ~ 401 (415)
T PRK07598 401 P 401 (415)
T ss_pred h
Confidence 4
No 330
>PLN02710 farnesyltranstransferase subunit beta
Probab=24.63 E-value=7.1e+02 Score=29.29 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCCCCceee
Q 003553 369 ICRDILDYLRRDMIGPGGEIFS 390 (811)
Q Consensus 369 ~A~~t~~fl~~~m~~p~Ggfys 390 (811)
..+++++||.+ .+..+|||-.
T Consensus 192 ~~e~~~~~I~s-cQ~~dGGF~g 212 (439)
T PLN02710 192 LVKGVGDYILS-CQTYEGGIGG 212 (439)
T ss_pred hHHHHHHHHHH-hCCCCCCCCC
Confidence 36789999998 6778999964
No 331
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=24.56 E-value=1.6e+02 Score=32.20 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=38.3
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003553 418 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 491 (811)
Q Consensus 418 i~~~L~----~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 491 (811)
|.+++. .+..++...||+... ++ .+.+++|+.+|++.+.+++.+..++++|+
T Consensus 243 L~~~L~~L~~rer~Vi~lr~gl~~~---------------~~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr 298 (298)
T TIGR02997 243 LESLLAELTPRERQVLRLRFGLDGG---------------EP-------LTLAEIGRRLNLSRERVRQIEAKALRKLR 298 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCC---------------CC-------cCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 555543 345678888888421 11 24678999999999999999999998873
No 332
>PRK13272 treA trehalase; Provisional
Probab=24.37 E-value=1.3e+03 Score=27.87 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=61.9
Q ss_pred hccHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 003553 508 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 583 (811)
Q Consensus 508 tsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~~~ 583 (811)
++-|+++.. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||+ .|.++.- .+.++.
T Consensus 340 VDLNalL~~~e~~LA~~~~~lG~~~------------~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~----- 401 (542)
T PRK13272 340 VDLNSLLYHLERTLAQACASSGLAA------------CSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL----- 401 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc-----
Confidence 457888866 6666777777521 12568899999999999999996 5554432 233321
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 003553 584 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 632 (811)
Q Consensus 584 leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 632 (811)
.+ .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.+
T Consensus 402 -~~-~~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpTt 443 (542)
T PRK13272 402 -SE-QVTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLATT 443 (542)
T ss_pred -cc-cccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCCC
Confidence 22 34467788887433333 4566777777666653 3554433
No 333
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=23.53 E-value=1.7e+02 Score=31.82 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 523 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 523 (811)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+ +.. =|.-++.++.+|..
T Consensus 133 s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~-~~~--~~~----~~~~~v~~f~~A~~ 185 (293)
T PRK09636 133 PFDEIASTLGRSPAACRQLASRARKHVRAARPR-FPV--SDE----EGAELVEAFFAALA 185 (293)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Cch----HHHHHHHHHHHHHH
Confidence 356899999999999999999999999876532 111 111 23456667766664
No 334
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.30 E-value=1e+02 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=24.1
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEE-EEcCCC-CccHHHH
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREE-RPDVDKV 190 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~v-kvD~ee-~pdi~~~ 190 (811)
..++.++|.+|++.. ++|+++=|.+ .+|..+ .|..+.+
T Consensus 2 ~iy~~~~C~~crka~----------~~L~~~~i~~~~~di~~~p~s~~eL 41 (105)
T cd03035 2 TLYGIKNCDTVKKAR----------KWLEARGVAYTFHDYRKDGLDAATL 41 (105)
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCCHHHH
Confidence 457899999999954 5677654433 456644 4454443
No 335
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=23.17 E-value=86 Score=35.80 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCCe---EEEEecCCCC-CCCCCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 003553 545 EYMEVAESAASFIRRHLYDEQTHR---LQHSFRNGPS-KAPGFLD--DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 618 (811)
Q Consensus 545 ~yle~A~~~~~~l~~~l~d~~~G~---l~~~~~~g~~-~~~~~le--DyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~ 618 (811)
..+.+=-.+++|+.++..+ .+|. .-++..+|-. ..+|.-. .+...|.-|.+.|..++|++||..|.+-.+-.
T Consensus 377 ~H~aaFyaAadWlV~NQd~-kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~py- 454 (594)
T KOG3760|consen 377 QHSAAFYAAADWLVKNQDD-KGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPY- 454 (594)
T ss_pred HHHHHHHHHHHHHhhCCCC-CCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCe-
Confidence 4455555678888888744 4442 1111223321 1122222 34578999999999999999998887655433
Q ss_pred HHccccCCC
Q 003553 619 ELFLDREGG 627 (811)
Q Consensus 619 ~~F~D~~~G 627 (811)
+|...++|
T Consensus 455 -k~~S~dgG 462 (594)
T KOG3760|consen 455 -KINSSDGG 462 (594)
T ss_pred -EeecCCCc
Confidence 45555554
No 336
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=22.76 E-value=1.1e+02 Score=37.27 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhh-hcCCCCCCCC
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFDV-RSKRPRPHLD 503 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~-R~~R~~P~~D 503 (811)
+..++++.+|++.+.+.+.-.++..||++. |.++.+.|+|
T Consensus 578 tl~ei~~~lgvs~eRVrQie~~al~kLr~~~~~~~l~~~~~ 618 (619)
T PRK05658 578 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSRKLRSFLD 618 (619)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 457899999999999999999999999865 3344444444
No 337
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=22.67 E-value=1.7e+02 Score=32.18 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhccHHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 523 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 523 (811)
+.+++|+.+|+++..++..+..+|++|.+.+. +..+.-+. ..-++.++..|.+
T Consensus 136 s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~-~~~~~~~~------~~~~~~~f~~a~~ 188 (290)
T PRK09635 136 PYQQIATTIGSQASTCRQLAHRARRKINESRI-AASVEPAQ------HRVVTRAFIEACS 188 (290)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCC-CCCCChHH------HHHHHHHHHHHHH
Confidence 35689999999999999999999999987543 21222111 2445666666654
No 338
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=22.47 E-value=70 Score=32.99 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=15.0
Q ss_pred CcE-EEEEcccCchhhHHhh
Q 003553 139 VPI-FLSIGYSTCHWCHVME 157 (811)
Q Consensus 139 Kpi-~l~i~~~~C~wC~~me 157 (811)
|+| ++++.++||..|....
T Consensus 26 k~vvlf~~pa~~cp~C~~el 45 (203)
T cd03016 26 SWGILFSHPADFTPVCTTEL 45 (203)
T ss_pred CEEEEEEecCCCCCcCHHHH
Confidence 655 5588999999999854
No 339
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=22.13 E-value=2.1e+02 Score=31.71 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=37.5
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcC--CCCCCCCcchhhccHHHHHHHHHHHH
Q 003553 464 DSSASASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARAS 522 (811)
Q Consensus 464 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~--R~~P~~DdKiltsWNal~I~ALa~A~ 522 (811)
+..++|+.+|+++..++.+|..+|++|++.|.+ +..|..|.. =|--++.++..|.
T Consensus 171 s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~----~~~~~v~~~~~A~ 227 (339)
T PRK08241 171 SAAEVAELLDTSVAAVNSALQRARATLAERGPSAADTLREPDDP----EERALLARYVAAF 227 (339)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCCcccccCCCCCh----HHHHHHHHHHHHH
Confidence 457899999999999999999999999874321 122444544 2344455555554
No 340
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=22.02 E-value=7.3e+02 Score=30.63 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003553 548 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 624 (811)
Q Consensus 548 e~A~~~~~~l~~~l~d~~~G~l~~~~-~--~g~~~~~~~leDyA~~i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 624 (811)
+.|+....++.++. +.|++.|.. . +|.+ .-+..|.-=..|..+.+.+..|+|..+++........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~- 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILK- 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-
Confidence 56777777777763 458888875 2 2332 22334444567788889999999999987776666655554421
Q ss_pred CCCcc-cccCCCC--Cc-ccccccCCCC---------CCCCChHHH---HHHHHHHHHHHhC--CCCchHHHHHHHHHHH
Q 003553 625 EGGGY-FNTTGED--PS-VLLRVKEDHD---------GAEPSGNSV---SVINLVRLASIVA--GSKSDYYRQNAEHSLA 686 (811)
Q Consensus 625 ~~Ggy-f~t~~~~--~~-li~R~k~~~D---------~a~PS~Nsv---~a~~L~rL~~lt~--~~~~~~y~~~A~~~l~ 686 (811)
++.+ |.+..+. +. -....++..+ +.----|++ +..++.+++.+.+ ++ .+.+.+.|+++.+
T Consensus 378 -~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~-~~~~~~~a~~l~~ 455 (641)
T COG3408 378 -GFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEED-AARLEKIARRLKE 455 (641)
T ss_pred -cCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHH
Confidence 1111 2211110 00 0001111111 011124555 5566778888887 22 3677888888888
Q ss_pred HHHHHHH
Q 003553 687 VFETRLK 693 (811)
Q Consensus 687 ~~~~~i~ 693 (811)
.|....-
T Consensus 456 ~F~~~fw 462 (641)
T COG3408 456 SFEAKFW 462 (641)
T ss_pred HHHHHhh
Confidence 8766553
No 341
>PRK13191 putative peroxiredoxin; Provisional
Probab=21.87 E-value=74 Score=33.37 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=17.1
Q ss_pred cCCcEEE-EEcccCchhhHHhh
Q 003553 137 RDVPIFL-SIGYSTCHWCHVME 157 (811)
Q Consensus 137 ~~Kpi~l-~i~~~~C~wC~~me 157 (811)
.||+++| ++.++||..|...-
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl 53 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEF 53 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHH
Confidence 4787665 88999999999854
No 342
>PRK09210 RNA polymerase sigma factor RpoD; Validated
Probab=21.49 E-value=2.4e+02 Score=32.12 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003553 417 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 492 (811)
Q Consensus 417 Ei~~~L~----~~~~~~~~~y~l~~~Gn~e~~~~~dp~~~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 492 (811)
+|.++|. .+..++..+||+..+. + .+..++++.+|++.+.+.+...++..||++
T Consensus 298 ~l~~~l~~L~~rEr~Vl~lrygl~~~~---------------~-------~tl~EIa~~lgvs~erVrQi~~~Al~kLr~ 355 (367)
T PRK09210 298 QLEDVLDTLTDREENVLRLRFGLDDGR---------------T-------RTLEEVGKVFGVTRERIRQIEAKALRKLRH 355 (367)
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCC---------------C-------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhC
Confidence 4555544 3456778888885321 1 245789999999999999999999999975
Q ss_pred h
Q 003553 493 V 493 (811)
Q Consensus 493 ~ 493 (811)
.
T Consensus 356 ~ 356 (367)
T PRK09210 356 P 356 (367)
T ss_pred h
Confidence 4
No 343
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=21.49 E-value=2e+02 Score=31.91 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=63.2
Q ss_pred cChHHHHHHHhhcCCcEEEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcc---C
Q 003553 125 AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG---G 201 (811)
Q Consensus 125 ~~~~~a~~~Ak~~~Kpi~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vkvD~ee~pdi~~~y~~~~q~~~g---~ 201 (811)
..-++++++|.+.+.|.||+| ..-|.....-....-.-.++.+..+++-+.++.+-+..|.- +..+...+.- .
T Consensus 180 ~eL~~ai~~A~~~~GpalIeV-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 255 (301)
T PRK05778 180 KQLVELIKKAISHKGFAFIDV-LSPCVTFNGRNTSTKSPAYMREYYKKRVYKLKLEEDYDPTD---RDKAAEKMLEEELG 255 (301)
T ss_pred HHHHHHHHHHHhCCCCEEEEE-cCCCCCCCCcCCcccCHHHHHHHHHhhcEEcccccccCccc---HHHHHHhcchhhhC
Confidence 334779999999999999999 66677776422211123457778888888885443322321 1233333333 4
Q ss_pred cCeeehhhhhhchHHHHHHHHHHHHHHHH
Q 003553 202 GGWKVKDAWDKKRDMLAQSGAFAIEQLSE 230 (811)
Q Consensus 202 gGW~i~~~w~~~r~~~~~~a~~i~~~l~~ 230 (811)
|...+-..+++++....+....+.+.+++
T Consensus 256 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 284 (301)
T PRK05778 256 GKIPIGVFYKNERPTFEERLEKLIEPLLE 284 (301)
T ss_pred CceEEEEEEECCCCCHHHHHHHHHHHHhh
Confidence 66788888888777777665555554443
No 344
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.35 E-value=1.5e+02 Score=28.60 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=27.3
Q ss_pred EEEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHH
Q 003553 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQA 197 (811)
Q Consensus 142 ~l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~vk-vD~ee~pdi~~~y~~~~q~ 197 (811)
+..++.++|..|+.-. ++|+++-|.++ +|..+.|--..-....++.
T Consensus 2 i~iY~~~~C~~crkA~----------~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAK----------AWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 3467889999999843 67776554444 5665444333333344443
No 345
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=20.81 E-value=7.1e+02 Score=26.86 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 003553 345 YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 382 (811)
Q Consensus 345 yDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~ 382 (811)
+-.|..+.+++++.. +.+...++++++||.+.+.
T Consensus 141 ~~TA~vl~aL~~~g~----~~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 141 ALTAYVLIALLEAGL----PSERPVVEKALSCLEAALD 174 (292)
T ss_pred chHHHHHHHHHhcCC----ccccHHHHHHHHHHHHhcc
Confidence 457888888887643 3366788999999998664
No 346
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=20.71 E-value=1.7e+02 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=28.2
Q ss_pred EEEcccCchhhHHhhhhcCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhccCcCe
Q 003553 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGW 204 (811)
Q Consensus 143 l~i~~~~C~wC~~me~e~f~d~eva~~ln~~fv~v-kvD~ee~pdi~~~y~~~~q~~~g~gGW 204 (811)
.-++.++|.+|++-. ++|.++=|.+ .+|..+.|--..-....++.+ ++||
T Consensus 3 ~iY~~~~C~~crkA~----------~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~--~~~~ 53 (132)
T PRK13344 3 KIYTISSCTSCKKAK----------TWLNAHQLSYKEQNLGKEPLTKEEILAILTKT--ENGI 53 (132)
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh--CCCH
Confidence 356889999999943 5676644433 356644433333333444433 2467
Done!