BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>003554
MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNN
QLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGND
YNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQA
ACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTS
FINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSS
MISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFW
VDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVD
DPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSK
REDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIA
RNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAAC
SDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQD
RPNEVVCKSRGLFGFFTRPSIRKPKPQESEYCEQTGSNIGIANSESNEIHRFELLRNELM
ELEKRVQRSADQSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKETSMVL
NFLLFSSGRGIFKVKRGTTGLPQFWFCYVVA

High Scoring Gene Products

Symbol, full name Information P value
AT3G11560 protein from Arabidopsis thaliana 8.5e-223

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  003554
        (811 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080752 - symbol:AT3G11560 species:3702 "Arabi...  2151  8.5e-223  1


>TAIR|locus:2080752 [details] [associations]
            symbol:AT3G11560 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0010075 "regulation of meristem growth" evidence=RCA]
            EMBL:CP002686 InterPro:IPR011685 Pfam:PF07766 GO:GO:0009941
            EMBL:BT001998 EMBL:AK317058 IPI:IPI00521605 RefSeq:NP_001078136.1
            RefSeq:NP_187763.3 RefSeq:NP_851000.1 UniGene:At.28347
            STRING:Q8H0W4 PRIDE:Q8H0W4 EnsemblPlants:AT3G11560.2
            EnsemblPlants:AT3G11560.3 EnsemblPlants:AT3G11560.4 GeneID:820329
            KEGG:ath:AT3G11560 TAIR:At3g11560 HOGENOM:HOG000030606
            InParanoid:Q8H0W4 OMA:DINVFVQ PhylomeDB:Q8H0W4
            ProtClustDB:CLSN2686838 Genevestigator:Q8H0W4 Uniprot:Q8H0W4
        Length = 872

 Score = 2151 (762.2 bits), Expect = 8.5e-223, P = 8.5e-223
 Identities = 448/781 (57%), Positives = 559/781 (71%)

Query:     1 MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNN 60
             MA +L     + SS +S P   R S+ + I C+R V L+       YL     L N ++ 
Sbjct:     1 MAARLQRPGLVSSSSTSKPCLPRMSIVTFISCKRTVHLE-------YLSNC--LSNPRSQ 51

Query:    61 QLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGND 120
               V Y   F      +++  L+L AS++DGV +NGSPQ  +SS++E+MR     SLQ  +
Sbjct:    52 LFVRY--GFLERSNKKKSQRLVL-ASAEDGVAINGSPQPRSSSNLEDMRTSFTGSLQDEN 108

Query:   121 YNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQA 180
              ++GL QSLHDAAR  ELA+KEK + S+ SW  + WLG D+ AW+KTLSYQAS YSLLQA
Sbjct:   109 NSNGLNQSLHDAARSIELAVKEKITPSRFSWFPSTWLGADKYAWVKTLSYQASLYSLLQA 168

Query:   181 ACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTS 240
               EISS G+ RD D+ VFVQRSL RQ+APLE+++R+ LS+K P+ YEWFWSEQVP+VVTS
Sbjct:   169 VNEISSRGNYRDEDINVFVQRSLSRQAAPLENMMRENLSSKHPKAYEWFWSEQVPSVVTS 228

Query:   241 FINYFERDQRFTAATAVXXXXXXXXXXXXXXXXXXXXALTCIAAITKLGPAKVSCSQFSS 300
             F+NY E DQRF AAT+V                     L CIAAITK+GPAK SC  F S
Sbjct:   229 FVNYLEGDQRFVAATSVYAKGKSAAASNEIEVSLLMLVLNCIAAITKVGPAKFSCPPFFS 288

Query:   301 MISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFW 360
             MI D TGRLM+ LVD VP+ QAY+SIK IGL REFL HFGPRA+ CRV  D D++EVIFW
Sbjct:   289 MIPDTTGRLMEKLVDFVPLPQAYHSIKSIGLQREFLTHFGPRAAVCRVNGDIDTDEVIFW 348

Query:   361 VDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVD 420
             VDL+QKQLQRAIDREKIWS+LTTSESIEVLERDLAIFGFFIALGRSTQS L+ NGFD ++
Sbjct:   349 VDLIQKQLQRAIDREKIWSKLTTSESIEVLERDLAIFGFFIALGRSTQSILAANGFDSLE 408

Query:   421 DPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGM--PKQSHGHK 478
             +P++ L+R+LIGGSVLYYPQLS+ISSYQLYVEVVCEEL+W+ FYP +TG   P QSHGHK
Sbjct:   409 NPLEDLVRHLIGGSVLYYPQLSAISSYQLYVEVVCEELEWIPFYPNNTGTQPPNQSHGHK 468

Query:   479 SKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMG 538
             +K E PPN E IPQ+LDVCS+W+QSFIK+SKW ENPSNVKAAKFLSKG+  L+ C +E+G
Sbjct:   469 TKPEGPPNYEVIPQLLDVCSYWLQSFIKYSKWPENPSNVKAAKFLSKGHKTLVRCKEELG 528

Query:   539 IARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKA 598
             I +N     A S+       +S+SFDKALESV+EAL+RLE LLQ L+VS+S+SGKEQ+KA
Sbjct:   529 ILKN-----ASSIVR-----ESNSFDKALESVDEALVRLESLLQELYVSNSSSGKEQIKA 578

Query:   599 ACSDLEKIRKLKKEAEFLEASVRAKAASLQQXXXXXXXXXXIGEKQWYLKGSKSRIADVV 658
             ACSDLEKIRKLKKEAEFLEA+ RAKAASLQQ             ++ Y KG  ++ A+  
Sbjct:   579 ACSDLEKIRKLKKEAEFLEATFRAKAASLQQGGDKNDSQESYEVQKRYFKGKDTKNANSS 638

Query:   659 QDRPNEVVCKSRGLFGFFTRPSIRKPKPQES--EYCEQTGSNIGIANSESNEIHRFELLR 716
             +D+   +   SRG +GFF RPS +K  P+ S  EY  ++  N+   +SE  EI RFE+LR
Sbjct:   639 EDQGKSI---SRGFWGFFVRPSRKKLDPELSGDEYIGKSSGNLLSIDSEPIEISRFEILR 695

Query:   717 NELMELEKRVQRSADQSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKET 776
             NEL+ELEKRV+RS DQS + E++   D   + S +   QLVQ  K EN++ K++ KL+E 
Sbjct:   696 NELIELEKRVKRSTDQSVDEEELISEDTPQSSSRTESVQLVQTPKKENMMEKTLQKLREA 755

Query:   777 S 777
             +
Sbjct:   756 T 756


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      811       781   0.00094  121 3  11 22  0.40    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  404 KB (2195 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  71.45u 0.10s 71.55t   Elapsed:  00:00:03
  Total cpu time:  71.46u 0.10s 71.56t   Elapsed:  00:00:03
  Start:  Mon May 20 15:02:52 2013   End:  Mon May 20 15:02:55 2013

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