BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003554
(811 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34673|UXAA_BACSU Altronate dehydratase OS=Bacillus subtilis (strain 168) GN=uxaA
PE=2 SV=2
Length = 497
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 459 DWLLFYPGSTGM---PKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWL-ENP 514
D+L+ GST + P+ + N E +++D+ + + Q FIKH + + ENP
Sbjct: 285 DYLIAQGGSTVLTEVPEMFGAETILMQRAANEEVFHKIVDLINDFKQYFIKHDQPVYENP 344
Query: 515 SNVKAAKFLSKGYDKLMDCMKEMGIA 540
S A +S DK + C ++ GI+
Sbjct: 345 SPGNKAGGISTLEDKSLGCTQKAGIS 370
>sp|Q3BXK9|CCA_XANC5 Multifunctional CCA protein OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=cca PE=3 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 192 DRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRF 251
D D V ++ LLR+ + ++ RD+ + +L + Y Q + + E R
Sbjct: 77 DADPSVTLEEDLLRRDFTINAIARDEETGELFDPYNGARDLQARVLRHVGPAFVEDPVRV 136
Query: 252 TAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKV--------SCSQFSSMIS 303
A + LG ++DT+ LM + + L P +V SC+Q S+ +
Sbjct: 137 LRAARFMARLAPLGFTLAADTAALMREMAASGELDSLVPERVWQELRRALSCAQPSAFLR 196
Query: 304 DITGRLMDTLVDLVPISQAYYSIK---------DIGLHREFLAHFGPR 342
+ D L ++P A Y + D G+H+E ++ R
Sbjct: 197 TLHD--ADALRVILPEVDALYGVPQRAEFHPEVDTGIHQEMVSDMAAR 242
>sp|Q5H2E1|SYI_XANOR Isoleucine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=ileS PE=3 SV=1
Length = 943
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIESVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNIGIANSES-NEIHRFELLRNELMELEK 724
+P P+ +E Q + + + + ELL +E + +K
Sbjct: 502 EPHPRSTELLRQVADRVELGGVDVWYTLDAAELLGDEAADYDK 544
>sp|Q2P5B0|SYI_XANOM Isoleucine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=ileS PE=3 SV=1
Length = 943
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIESVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNIGIANSES-NEIHRFELLRNELMELEK 724
+P P+ +E Q + + + + ELL +E + +K
Sbjct: 502 EPHPRSTELLRQVADRVELGGVDVWYTLDAAELLGDEAADYDK 544
>sp|Q8PN19|SYI_XANAC Isoleucine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=ileS PE=3 SV=1
Length = 943
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIENVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNI 699
+P P+ +E Q +
Sbjct: 502 EPHPRSTELLRQVADRV 518
>sp|Q3BW42|SYI_XANC5 Isoleucine--tRNA ligase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=ileS PE=3 SV=1
Length = 943
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIENVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNI 699
+P P+ +E Q +
Sbjct: 502 EPHPRSTELLRQVADRV 518
>sp|Q8PPG9|CCA_XANAC Multifunctional CCA protein OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=cca PE=3 SV=1
Length = 410
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 192 DRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRF 251
D D V ++ LLR+ + ++ RD+ + +L + Y Q + + E R
Sbjct: 77 DADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNGVRDLQARVLRHVGPAFIEDPVRV 136
Query: 252 TAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKV--------SCSQFSSMIS 303
A + LG +++T+ LM + + L P +V SC+Q S+ +
Sbjct: 137 LRAARFMARLAPLGFSLAAETAALMRDMAAGGELDSLVPERVWQELRRALSCAQPSAFLR 196
Query: 304 DITGRLMDTLVDLVPISQAYYSIK---------DIGLHREFLAHFGPR 342
+ D L ++P A Y + D G+H+E ++ R
Sbjct: 197 TLHD--ADALRVILPEVDALYGVPQRADFHPEVDTGIHQEMVSDIAAR 242
>sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4
PE=1 SV=2
Length = 1516
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 53 MLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKL 112
++E+GK ++LVS +FG + L+ A +D V SP+ TS R +
Sbjct: 842 IVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSA-AVATSPRTPTSPHASSPRTSM 900
Query: 113 NQSLQGNDYNDGLVQS------LHDAARVFELAIKEKGSVS 147
+S +D ND ++S + D +++ + +E G VS
Sbjct: 901 -ESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVS 940
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,183,540
Number of Sequences: 539616
Number of extensions: 11724177
Number of successful extensions: 35647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 35593
Number of HSP's gapped (non-prelim): 118
length of query: 811
length of database: 191,569,459
effective HSP length: 126
effective length of query: 685
effective length of database: 123,577,843
effective search space: 84650822455
effective search space used: 84650822455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)