Query 003554
Match_columns 811
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 29240
Date Tue Mar 26 17:29:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003554.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1605-1609//hhsearch_pdb/003554hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wj8_A Nucleoprotein; RNA bind 1.0 1 1 18.5 -1.8 106 229-337 197-302 (391)
2 3iqt_A Signal transduction his 1.0 1 1 17.0 3.3 51 560-610 39-94 (123)
3 2v4h_A NF-kappa-B essential mo 1.0 1 1 16.0 8.5 72 544-625 12-83 (110)
4 1s9u_A Putative component of a 1.0 1 1 15.8 1.6 97 288-413 80-191 (207)
5 3myf_A Sensor protein; HPT, hi 1.0 1 1 15.7 5.1 49 560-608 30-83 (119)
6 2kk1_A Tyrosine-protein kinase 1.0 1 1 15.6 2.5 88 493-612 41-128 (135)
7 1n1c_A TORA specific chaperone 1.0 1 1 15.5 2.2 108 288-413 83-196 (217)
8 1m1j_C Fibrinogen gamma chain; 1.0 1 1 15.4 6.6 29 431-464 163-195 (409)
9 1zzp_A P150, C-ABL, proto-onco 1.0 1 1 15.4 0.8 100 487-613 22-122 (130)
10 1snn_A DHBP synthase, 3,4-dihy 1.0 1 1 15.1 0.3 17 76-92 143-159 (227)
No 1
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=1.00 E-value=1 Score=18.55 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 42025402565734101236333210000247865689998852689999999999852188511244310234678997
Q 003554 229 FWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGR 308 (811)
Q Consensus 229 fws~Q~P~vv~sFVn~lE~D~rF~aaTav~~~~~~~~~~~~SdVsLL~LalsC~aAi~KLGsakVSCp~F~S~i~D~~gr 308 (811)
|--...|.++.+|-..||+.+.|-..--.|++..... +.||-+++|.+.|++.|-- -|.+-.-|-..--..-.|.--
T Consensus 197 yp~~~~~~ia~sfyelfe~k~yy~~~fi~~g~a~~s~-~~gsk~e~lf~~ifm~ayg--agq~mlrwgviars~~nimlg 273 (391)
T 2wj8_A 197 YKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSST-RGGSRVEGIFAGLFMNAYG--AGQVMLRWGVLAKSVKNIMLG 273 (391)
T ss_dssp CTTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHTTTT--TTCHHHHHHHHHHHTTCGGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHC--CCCCEEEEHHHHHCCCCEEEE
T ss_conf 7788879999999999851606778898860553478-7772178899999998615--640102002311104555530
Q ss_pred HHHHHCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 88640024011348788864213477775
Q 003554 309 LMDTLVDLVPISQAYYSIKDIGLHREFLA 337 (811)
Q Consensus 309 LMdml~~fVpv~q~Y~~~kdiGL~rEFL~ 337 (811)
-.-..-++--|.++|.+....|-+--||-
T Consensus 274 h~svqae~~qv~evy~~~~k~G~EsG~~H 302 (391)
T 2wj8_A 274 HASVQAEMEQVVEVYEYAQKLGGEAGFYH 302 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHGGGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 11889999999999999998686410035
No 2
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=17.02 Aligned_cols=51 Identities=29% Similarity=0.390 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2139999988999999-----99999877632457541899999742499999877
Q 003554 560 SDSFDKALESVEEALI-----RLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLK 610 (811)
Q Consensus 560 ~~sfdk~lesVe~Al~-----rlE~Llqel~~ssS~SGke~lkaacsDLekIRkLK 610 (811)
+.+..+.++.+..|+. .+..+.-.+|-++++.|...|+++|..||..-|-.
T Consensus 39 l~~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g 94 (123)
T 3iqt_A 39 LDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSG 94 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 98779999999999886789999999999989999838999999999999998769
No 3
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=1.00 E-value=1 Score=16.03 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54333445333445552139999988999999999998776324575418999997424999998778899999978855
Q 003554 544 MIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAK 623 (811)
Q Consensus 544 ~~~~~~~~~~~~~~~e~~sfdk~lesVe~Al~rlE~Llqel~~ssS~SGke~lkaacsDLekIRkLKkeaEfleASfraK 623 (811)
+..+|+... +...+.++....|.+-|+||..-.....++ |+.+.....|||.|--||.-++.++.-|.|.
T Consensus 12 ~~~~~~~~~--~~~~ei~~L~~~L~~AEeaL~~Kq~~idel--------k~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 12 SGLVPRGSH--MASMQLEDLRQQLQQAEEALVAKQELIDKL--------KEEAEQHKIVMETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp -CCCCTTCC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 677760667--659899999999999999999999999999--------9999999998888899999999999887115
Q ss_pred HH
Q ss_conf 64
Q 003554 624 AA 625 (811)
Q Consensus 624 a~ 625 (811)
-+
T Consensus 82 Ra 83 (110)
T 2v4h_A 82 RH 83 (110)
T ss_dssp HH
T ss_pred HH
T ss_conf 03
No 4
>1s9u_A Putative component of anaerobic dehydrogenases; structural genomics, anaerobic dehydrogenases component, PSI structure initiative; 1.38A {Salmonella typhimurium} SCOP: a.184.1.1 PDB: 3efp_A 3cw0_A
Probab=1.00 E-value=1 Score=15.84 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH----------CCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
Q ss_conf 18851124431023467899788640----------02401134878886421347777520987545666687786422
Q 003554 288 LGPAKVSCSQFSSMISDITGRLMDTL----------VDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEV 357 (811)
Q Consensus 288 LGsakVSCp~F~S~i~D~~grLMdml----------~~fVpv~q~Y~~~kdiGL~rEFL~hFGpraa~~~~~~d~~~eEv 357 (811)
+|+.+.++|++-|.-.+.-|++|... .++.+-.......-+||+..||+.+.
T Consensus 80 ~g~~~~~~~py~S~yl~~e~~l~g~~~~~l~~~y~~~Gl~~~~~~~ep~Dhi~~~Lef~a~L------------------ 141 (207)
T 1s9u_A 80 IGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRENGIQFEMQQNEPEDHFGSLLLLAAWL------------------ 141 (207)
T ss_dssp TCSSCCSSCCBHHHHHSTTCCSSCHHHHHHHHHHHHTTCC------CCTTBHHHHHHHHHHH------------------
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH------------------
T ss_conf 89998807980103328877656789999999999869988889999977999999999999------------------
Q ss_pred EHHHHHHHH---HHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 144899999---99999968645--302554234899864356788998731100231102
Q 003554 358 IFWVDLVQK---QLQRAIDREKI--WSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSR 413 (811)
Q Consensus 358 ~FWI~LvQk---qL~~AidRE~I--wSrLtTsesiEvLEkDLAiFGFFiaLGRsTr~fLS~ 413 (811)
+.+ ..++.+-.+-+ |..- =.+.++. -+..+|+.++++=++.||..
T Consensus 142 ------~~~~~~~~~~~fl~~hL~~W~~~----f~~~~~~-~~~~~fY~~la~l~~~fl~~ 191 (207)
T 1s9u_A 142 ------AENDRHHECEQLLAWHLFPWSSR----FLDVFID-HAGHPFYQALGQLARLTLAQ 191 (207)
T ss_dssp ------HHTTCHHHHHHHHHHHTHHHHHH----HHHHHHH-HCCSHHHHHHHHHHHHHHHH
T ss_pred ------HCCCCHHHHHHHHHHHHHHHHHH----HHHHHHH-CCCCCHHHHHHHHHHHHHHH
T ss_conf ------81898999999999999999999----9999986-55983999999999999999
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=1.00 E-value=1 Score=15.74 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2139999988999999-----999998776324575418999997424999998
Q 003554 560 SDSFDKALESVEEALI-----RLEKLLQALHVSSSNSGKEQLKAACSDLEKIRK 608 (811)
Q Consensus 560 ~~sfdk~lesVe~Al~-----rlE~Llqel~~ssS~SGke~lkaacsDLekIRk 608 (811)
+.+..+.++.+..|+. .+..+.-.+|-++++.|...|+++|..||..-|
T Consensus 30 l~~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r 83 (119)
T 3myf_A 30 LDSLPETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALK 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 986799999999998858899999999999899998389999999999999988
No 6
>2kk1_A Tyrosine-protein kinase ABL2; methods development, tyrosin protein kinase ABL2, F-actin binding domain, NESG, alternative splicing, ATP-binding; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.56 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44242365433233033445977536888886100148788987212212454333445333445552139999988999
Q 003554 493 VLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEE 572 (811)
Q Consensus 493 Vl~VCs~W~~sFikyS~WlenPsnvkaa~FLskgq~~L~eC~Eel~i~~~~~~~~~~~~~~~~~~~e~~sfdk~lesVe~ 572 (811)
.+--|+.-+.+-+ .+-|++... +-++|.++.-|----+-.- .+. .-| -.-|
T Consensus 41 ~vLe~~elL~~Al-----~~~~s~S~v---~d~~h~L~~~C~~yvD~i~-------q~r---------nKF-----aFRE 91 (135)
T 2kk1_A 41 ALLECADLLSSAL-----TEPVPNSQL---VDTGHQLLDYCSGYVDCIP-------QTR---------NKF-----AFRE 91 (135)
T ss_dssp HHHHHHHHHHHHT-----TSCCCHHHH---HHHHHHHHHHHHHHGGGCS-------CHH---------HHH-----HHHH
T ss_pred HHHHHHHHHHHHH-----CCCCCCHHH---HHHHHHHHHHCCCCHHCCC-------CHH---------HHH-----HHHH
T ss_conf 9999999999876-----247751068---7753407765464010263-------212---------478-----9999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987763245754189999974249999987788
Q 003554 573 ALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKE 612 (811)
Q Consensus 573 Al~rlE~Llqel~~ssS~SGke~lkaacsDLekIRkLKke 612 (811)
|+-|||..+|||-++|...| -.++-.|+.++-.--||
T Consensus 92 avsrLe~slqeL~~~sa~ag---~p~~~~~~n~LLssVKE 128 (135)
T 2kk1_A 92 AVSKLELSLQELQVSSAAAG---VPGTNPVLNNLLSCVQE 128 (135)
T ss_dssp HHHHHHHHHHHHHHSCSSSS---CTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHH
T ss_conf 99998889999646887779---99888889999999999
No 7
>1n1c_A TORA specific chaperone; TORD, 3D-domain swapping; 2.40A {Shewanella massilia} SCOP: a.184.1.1
Probab=1.00 E-value=1 Score=15.51 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHH--HHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCEEHHHHHH
Q ss_conf 1885112443102346789--97886400240113487888642134777752098754-56666877864221448999
Q 003554 288 LGPAKVSCSQFSSMISDIT--GRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRAS-ACRVKNDRDSEEVIFWVDLV 364 (811)
Q Consensus 288 LGsakVSCp~F~S~i~D~~--grLMdml~~fVpv~q~Y~~~kdiGL~rEFL~hFGpraa-~~~~~~d~~~eEv~FWI~Lv 364 (811)
+|+.+.++|++-|.-.+.- +++|.... +.+ |+|+..+|=... .++.-.|+=.-+++|--.|+
T Consensus 83 ~g~~~~~~~pyeS~yl~~~~e~~l~g~~~--~~l-------------~~~y~~~Gl~~~~~~~Ep~DHi~~~Lefma~L~ 147 (217)
T 1n1c_A 83 LVGTKHSASPYASLYLSGEDEPLLFGEQH--QQM-------------SEFLHQSKLQVQSHFPEPADHLAVMLAYMAHLC 147 (217)
T ss_dssp TSCC--CCCCBGGGGC------CCSGGGH--HHH-------------HHHHHHHCCCCCCSSCCGGGBHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHH--HHH-------------HHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999855984324647875566673899--999-------------999999689008899999538999999999999
Q ss_pred HHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 999---9999968645302554234899864356788998731100231102
Q 003554 365 QKQ---LQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSR 413 (811)
Q Consensus 365 Qkq---L~~AidRE~IwSrLtTsesiEvLEkDLAiFGFFiaLGRsTr~fLS~ 413 (811)
.+. .++.+-.+-+-.=.. .=.+.++. -+..+|+.++++=|+.||..
T Consensus 148 ~~~~~~~q~~Fl~~HL~~W~~--~f~~~l~~-~~~~~FY~~la~l~~~fl~~ 196 (217)
T 1n1c_A 148 CHSENSVQLSFLQTCVNSWLA--KFINHLTQ-CNKNGFYSAVATLTLAWVKQ 196 (217)
T ss_dssp HHSCHHHHHHHHHHHTTTTHH--HHHHHHHH-HCSSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHH--HHHHHHHH-CCCCCHHHHHHHHHHHHHHH
T ss_conf 767699999999999999999--99999981-65672999999999999999
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=1.00 E-value=1 Score=15.43 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=13.4
Q ss_pred HCCEEEEECCCCCCCCEEEEEEEEEC----CCCCCCCC
Q ss_conf 61248880246754420244435423----24543358
Q 003554 431 IGGSVLYYPQLSSISSYQLYVEVVCE----ELDWLLFY 464 (811)
Q Consensus 431 egGsvl~YPQLSSISsYQLfvEVVcE----El~WLpFY 464 (811)
.-|.-.++|.-+ ... ++|.|| -=||.-|-
T Consensus 163 ~SGvY~I~p~~~-~~p----f~V~CDm~t~GGGWtviq 195 (409)
T 1m1j_C 163 KSGLYFIKPQKA-KQS----FLVYCEIDTYGNGWTVLQ 195 (409)
T ss_dssp SCEEEEECCTTC-SSC----EEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCC-CCC----EEEEEEECCCCCCEEEEE
T ss_conf 881699961899-872----799985105889658999
No 9
>1zzp_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; four helix bundle, nuclear export signal, transferase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.41 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 653102-4424236543323303344597753688888610014878898721221245433344533344555213999
Q 003554 487 AEAIPQ-VLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDK 565 (811)
Q Consensus 487 ~E~i~~-Vl~VCs~W~~sFikyS~WlenPsnvkaa~FLskgq~~L~eC~Eel~i~~~~~~~~~~~~~~~~~~~e~~sfdk 565 (811)
.+.|+. ++--|..-+.++|--++ +.|. -+-..|--||++|.-|---.+-.- ++ -.-|
T Consensus 22 ~~~Itke~~le~te~l~~a~a~~s--~~~~--~~s~~ld~g~~L~~yC~~yvd~i~---------Q~-------Rnkf-- 79 (130)
T 1zzp_A 22 SGAITKGVVLDSTEALCLAISRNS--EQMA--SHSAVLEAGKNLYSFCVSYVDSIQ---------QM-------RNKF-- 79 (130)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTT--TSCC--CHHHHHHHHHHHHHHHHHHGGGCS---------CS-------TTHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCC--CCHHHHHHHHHHHHHCCCCCCCHH---------HH-------HHHH--
T ss_conf 233129999988886038888631--5788--822888767888875464113139---------87-------6057--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998899999999999877632457541899999742499999877889
Q 003554 566 ALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEA 613 (811)
Q Consensus 566 ~lesVe~Al~rlE~Llqel~~ssS~SGke~lkaacsDLekIRkLKkea 613 (811)
.--||..|||+-+|||-++++++|- --++-.||.++-.--||-
T Consensus 80 ---afreAv~klE~sl~elq~~~a~~gg--~p~a~~~~s~LlssVkEI 122 (130)
T 1zzp_A 80 ---AFREAINKLENNLRELQICPATAGS--GPAATQDFSKLLSSVKEI 122 (130)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSSSSCS--SSCCCCCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHH
T ss_conf ---8999998740498998617545689--998757899999999999
No 10
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=1.00 E-value=1 Score=15.13 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.4
Q ss_pred CCCCCCEECCCCCCCEE
Q ss_conf 46632000300699703
Q 003554 76 RRNGHLLLHASSDDGVT 92 (811)
Q Consensus 76 rr~~~~~~las~ddgv~ 92 (811)
+|+||.|||-..+.||.
T Consensus 143 ~rPGHVfPL~A~~gGVl 159 (227)
T 1snn_A 143 RSPGSVTLLRAAEGLVK 159 (227)
T ss_dssp EEEEEEEEEECCTTGGG
T ss_pred CCCCCCEEEEECCCCEE
T ss_conf 88997203885789980
Done!