Query 003554
Match_columns 811
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 13730
Date Tue Mar 26 17:33:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003554.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1605-1609//hhsearch_scop/003554hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q1ra3 d.87.1.1 (A:320-422) P 4.6 67 0.0049 8.4 -0.4 14 223-236 4-17 (103)
2 d2qjza1 a.40.1.1 (A:13-132) Mi 4.5 80 0.0058 7.8 0.4 70 285-399 23-95 (120)
3 d1snna_ d.115.1.2 (A:) 3,4-dih 4.5 81 0.0059 7.8 0.3 17 76-92 142-158 (219)
4 d1s9ua_ a.184.1.1 (A:) Putativ 4.2 87 0.0063 7.6 0.9 101 287-413 79-191 (207)
5 d1v9va1 a.29.10.1 (A:8-108) Mi 4.1 89 0.0065 7.5 3.3 29 575-603 64-92 (101)
6 d1t3ta1 a.5.10.1 (A:153-220) F 3.7 91 0.0066 7.4 -0.3 51 514-565 3-59 (68)
7 d2od5a1 a.4.5.70 (A:6-96) Hypo 3.6 1E+02 0.0076 7.0 1.5 47 209-256 9-60 (91)
8 d1tksa_ d.115.1.2 (A:) 3,4-dih 3.5 1.1E+02 0.0078 6.9 0.2 16 77-92 123-138 (202)
9 d1y0ua_ a.4.5.5 (A:) Putative 2.6 1.5E+02 0.011 5.8 0.8 34 507-541 24-57 (89)
10 d1d7ya3 d.87.1.1 (A:309-405) N 2.4 1.7E+02 0.012 5.5 -0.1 15 219-233 1-15 (97)
No 1
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=4.59 E-value=67 Score=8.39 Aligned_cols=14 Identities=43% Similarity=0.983 Sum_probs=9.8
Q ss_pred CCCCHHHHCCCCHH
Q ss_conf 73102142025402
Q 003554 223 PEGYEWFWSEQVPA 236 (811)
Q Consensus 223 P~a~eWfws~Q~P~ 236 (811)
|+++-||||.|-.+
T Consensus 4 ~~~vP~FWSdQ~d~ 17 (103)
T d1q1ra3 4 DEAAPWFWSDQYEI 17 (103)
T ss_dssp CCCCCEEEEEETTE
T ss_pred CCCCCCEEEECCCC
T ss_conf 89999485203898
No 2
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.52 E-value=80 Score=7.84 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=42.3
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHH
Q ss_conf 852188511244310234678997886400-2401134878886421347777520987545666687786422144899
Q 003554 285 ITKLGPAKVSCSQFSSMISDITGRLMDTLV-DLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDL 363 (811)
Q Consensus 285 i~KLGsakVSCp~F~S~i~D~~grLMdml~-~fVpv~q~Y~~~kdiGL~rEFL~hFGpraa~~~~~~d~~~eEv~FWI~L 363 (811)
|--||++-+=|+ |||++. +-||+.++.. ++-.+.||..||
T Consensus 23 iEel~tGa~yCQ------------l~d~l~Pg~i~l~kVkf---~a~~e~e~~~N~------------------------ 63 (120)
T d2qjza1 23 IEQLCSGAAYCQ------------FMDMLFPGSIALKKVKF---QAKLEHEYIQNF------------------------ 63 (120)
T ss_dssp GGGGGGSHHHHH------------HHHHHSTTSSCGGGCCT---TCCSHHHHHHHH------------------------
T ss_pred HHHHCCCHHHHH------------HHHHHCCCCCHHHHHCC---CCCCHHHHHHHH------------------------
T ss_conf 998356399999------------99877768630766026---888779999999------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHH
Q ss_conf 999999999686453025542348998643--567889
Q 003554 364 VQKQLQRAIDREKIWSRLTTSESIEVLERD--LAIFGF 399 (811)
Q Consensus 364 vQkqL~~AidRE~IwSrLtTsesiEvLEkD--LAiFGF 399 (811)
|.||.|+.|-+|-.- -+++.|-+. .+.+-|
T Consensus 64 --klLq~af~kl~I~k~----i~v~kLikgk~qdnlef 95 (120)
T d2qjza1 64 --KILQAGFKRMGVDKI----IPVDKLVKGKFQDNFEF 95 (120)
T ss_dssp --HHHHHHHHHHTCCCC----CCHHHHTTCCHHHHHHH
T ss_pred --HHHHHHHHHCCCCCC----CCHHHHHCCCCHHHHHH
T ss_conf --999999998399988----88999862560669999
No 3
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.48 E-value=81 Score=7.80 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.5
Q ss_pred CCCCCCEECCCCCCCEE
Q ss_conf 46632000300699703
Q 003554 76 RRNGHLLLHASSDDGVT 92 (811)
Q Consensus 76 rr~~~~~~las~ddgv~ 92 (811)
+|+||.|||...+.||.
T Consensus 142 ~~PGHV~pL~a~~GGvl 158 (219)
T d1snna_ 142 RSPGSVTLLRAAEGLVK 158 (219)
T ss_dssp EEEEEEEEEECCTTGGG
T ss_pred CCCCCEEEEEEECCCCC
T ss_conf 58860101355047645
No 4
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic dehydrogenases YnfI {Salmonella typhimurium [TaxId: 90371]}
Probab=4.22 E-value=87 Score=7.57 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHH--------HHHCCC--EEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 218851124431023467899788--------640024--0113487888642134777752098754566668778642
Q 003554 287 KLGPAKVSCSQFSSMISDITGRLM--------DTLVDL--VPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEE 356 (811)
Q Consensus 287 KLGsakVSCp~F~S~i~D~~grLM--------dml~~f--Vpv~q~Y~~~kdiGL~rEFL~hFGpraa~~~~~~d~~~eE 356 (811)
=+||.+..||++-|.-.+.-|.+| +....+ .+-...-...-+||++.+|+.+.--+. .
T Consensus 79 F~g~~~~~~~pyeS~y~~~e~~l~g~~~~~v~~~y~~~Gl~~~~~~~ep~DHi~~eLefma~L~~~~----------~-- 146 (207)
T d1s9ua_ 79 FIGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRENGIQFEMQQNEPEDHFGSLLLLAAWLAEND----------R-- 146 (207)
T ss_dssp HTCSSCCSSCCBHHHHHSTTCCSSCHHHHHHHHHHHHTTCC------CCTTBHHHHHHHHHHHHHTT----------C--
T ss_pred HCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----------C--
T ss_conf 4899998658921034678651144999999999999699759889999537999999999998768----------6--
Q ss_pred EEHHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 214489999999999968645--302554234899864356788998731100231102
Q 003554 357 VIFWVDLVQKQLQRAIDREKI--WSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSR 413 (811)
Q Consensus 357 v~FWI~LvQkqL~~AidRE~I--wSrLtTsesiEvLEkDLAiFGFFiaLGRsTr~fLS~ 413 (811)
. ..++.+-.|-+ |.. .=.+.+ .+-+..+|+.++++-|+.||..
T Consensus 147 ----~-----~~~~~fl~~hl~~W~~----~f~~~l-~~~~~~~fY~~la~ll~~fL~~ 191 (207)
T d1s9ua_ 147 ----H-----HECEQLLAWHLFPWSS----RFLDVF-IDHAGHPFYQALGQLARLTLAQ 191 (207)
T ss_dssp ----H-----HHHHHHHHHHTHHHHH----HHHHHH-HHHCCSHHHHHHHHHHHHHHHH
T ss_pred ----H-----HHHHHHHHHHHHHHHH----HHHHHH-HHCCCCCHHHHHHHHHHHHHHH
T ss_conf ----8-----9999999999999999----999999-8662884699999999999999
No 5
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.15 E-value=89 Score=7.51 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999987763245754189999974249
Q 003554 575 IRLEKLLQALHVSSSNSGKEQLKAACSDL 603 (811)
Q Consensus 575 ~rlE~Llqel~~ssS~SGke~lkaacsDL 603 (811)
-+||+|++|-|-.|..+....+...-..|
T Consensus 64 e~LekLl~ea~erSe~~~~~~i~~lvkkL 92 (101)
T d1v9va1 64 EKLERLLQDAHERSDSEEVSFIVQLVRKL 92 (101)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999998625777889999999999
No 6
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.67 E-value=91 Score=7.43 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC------CCCCCCCCCCCCCCCHHHH
Q ss_conf 775368888861001487889872122124543------3344533344555213999
Q 003554 514 PSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIE------SAESVTYSRTEIDSDSFDK 565 (811)
Q Consensus 514 Psnvkaa~FLskgq~~L~eC~Eel~i~~~~~~~------~~~~~~~~~~~~e~~sfdk 565 (811)
|.-++-..++..|..-|..-++++|++.+..-+ |.+.+. -+|+.|+..|++
T Consensus 3 P~pv~~v~i~~~~~~~L~~~n~~~gLaL~~~e~~~i~~~f~~~~R-~PTd~EL~~~aQ 59 (68)
T d1t3ta1 3 PAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGR-NPNDIELYMFAQ 59 (68)
T ss_dssp CCCCCBCCHHHHTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS-CCBHHHHHHHHH
T ss_pred CCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
T ss_conf 998515547558999999999976888999999999999874289-988999999962
No 7
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=3.63 E-value=1e+02 Score=7.00 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCC----CCHHHHCC-CCHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 0589999675205973----10214202-540256573410123633321000
Q 003554 209 PLESLIRDKLSAKLPE----GYEWFWSE-QVPAVVTSFINYFERDQRFTAATA 256 (811)
Q Consensus 209 pLE~~Ir~~Ls~r~P~----a~eWfws~-Q~P~vv~sFVn~lE~D~rF~aaTa 256 (811)
-|-+.|++-|+.+ |. ..+|.-.. ..-..-...-|+|++|+||.-.-.
T Consensus 9 rlR~~I~k~L~~~-p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~kiG~ 60 (91)
T d2od5a1 9 RIREKIKKFLGDR-PRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKVGY 60 (91)
T ss_dssp HHHHHHHHHTSSS-CEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHEECE
T ss_conf 9999999999739-976899999999751148988999888860852301010
No 8
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=3.55 E-value=1.1e+02 Score=6.92 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=6.9
Q ss_pred CCCCCEECCCCCCCEE
Q ss_conf 6632000300699703
Q 003554 77 RNGHLLLHASSDDGVT 92 (811)
Q Consensus 77 r~~~~~~las~ddgv~ 92 (811)
|+||.+||...+.||.
T Consensus 123 ~PGHv~pl~a~~ggvl 138 (202)
T d1tksa_ 123 KPGHILPLRAVPGLLK 138 (202)
T ss_dssp EEEEEEEEEECTTGGG
T ss_pred CCCCCCEEEEECCCCC
T ss_conf 4434110365047725
No 9
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.64 E-value=1.5e+02 Score=5.82 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 03344597753688888610014878898721221
Q 003554 507 HSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIAR 541 (811)
Q Consensus 507 yS~WlenPsnvkaa~FLskgq~~L~eC~Eel~i~~ 541 (811)
|..-++||.--+-++|+-||.+. .|-|+++++++
T Consensus 24 y~~av~nPvRrkiLrmi~kgrse-dEIm~~l~LSk 57 (89)
T d1y0ua_ 24 YNYAVTNPVRRKILRMLDKGRSE-EEIMQTLSLSK 57 (89)
T ss_dssp HHHHHSCHHHHHHHHHHHTTCCH-HHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHCCCH
T ss_conf 99998457999999999734789-99999956579
No 10
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=2.38 E-value=1.7e+02 Score=5.51 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=0.0
Q ss_pred HCCCCCCCHHHHCCC
Q ss_conf 205973102142025
Q 003554 219 SAKLPEGYEWFWSEQ 233 (811)
Q Consensus 219 s~r~P~a~eWfws~Q 233 (811)
++..-...-||||.|
T Consensus 1 ta~~y~~vP~FWSdQ 15 (97)
T d1d7ya3 1 TAPGYAELPWYWSDQ 15 (97)
T ss_dssp TSCCCCCCCEEEEEE
T ss_pred CCCCCCCCCCEEECC
T ss_conf 989878899178505
Done!