Query 003555
Match_columns 811
No_of_seqs 416 out of 3442
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 17:47:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003555.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1605-1609//hhsearch_pdb/003555hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 400.1 18.2 259 510-786 42-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 397.4 14.5 261 507-785 11-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 396.6 16.6 265 501-783 18-305 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 392.4 18.0 266 505-789 32-304 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 384.3 14.6 265 504-785 59-348 (353)
6 4fie_A Serine/threonine-protei 1.0 1 1 382.2 17.9 249 510-777 152-400 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 381.8 16.5 249 510-777 75-323 (346)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 380.2 17.7 251 511-783 60-315 (336)
9 4b9d_A Serine/threonine-protei 1.0 1 1 379.3 15.9 249 510-777 25-276 (350)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 372.5 13.6 247 510-776 33-283 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=400.13 Aligned_cols=259 Identities=27% Similarity=0.406 Sum_probs=217.8
Q ss_pred HHHHHHHCCCCCCEEEEEEEECC-----CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEE
Q ss_conf 72232211856624399999848-----9789999974697623099999999998625878953031079605621489
Q 003555 510 TNGFEEELGRGCFGAVYKGSICE-----GNKIVAVKRLENPVEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLV 584 (811)
Q Consensus 510 ~~~~~~~LG~G~~g~Vy~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV 584 (811)
.+.+.++||+|+||+||+|++.. ++..||||+++.......++|.+|+.++++++|||||+++|+|.+....+||
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 121 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV 121 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 92887797147784899899878665778969999997757979999999999999858998999698999989989999
Q ss_pred EEECCCCCHHHHHHCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEE
Q ss_conf 95069899888741489--------------9984578999999999999987621688746238888968887999769
Q 003555 585 YEFMSKGSLENLLSNVE--------------SGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAK 650 (811)
Q Consensus 585 ~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~k 650 (811)
|||+++|+|.++|+... ..++|.+++.|+.||+.||.|||+. +|+||||||+|||+++++.+|
T Consensus 122 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~K 198 (329)
T 4aoj_A 122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVK 198 (329)
T ss_dssp EECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEE
T ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCCEE
T ss_conf 98279993999998607541001221124578899999999999999999998408---842266667648988999689
Q ss_pred EEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 970577522588987-61003445788668101136888863314889999999890-9978888877522034778898
Q 003555 651 ISNFSLAKILMPNQT-GIVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVC-CRSNFEVNVSTADVVLLSTWVY 728 (811)
Q Consensus 651 l~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~ellt-g~~p~~~~~~~~~~~~l~~~~~ 728 (811)
|+|||+++....... .......||+.|||||.+.+..++.++|||||||++|||+| |+.||......+ + .
T Consensus 199 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~----~----~ 270 (329)
T 4aoj_A 199 IGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE----A----I 270 (329)
T ss_dssp ECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH----H----H
T ss_pred ECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH----H----H
T ss_conf 7666033365678753004764556566582654479999663001057899999828999999989999----9----9
Q ss_pred HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 7531011000017863127689999999998825699999999899999943156999
Q 003555 729 NCFIAKELSKLVGEDEEVDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTMEIP 786 (811)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~~~~ 786 (811)
.....+ .+...+...++++.+|+.+||+.||++||||.||++.|+.+.+.|
T Consensus 271 ~~i~~g-------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 271 DCITQG-------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HHHHHT-------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHCC-------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 999808-------989986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=397.42 Aligned_cols=261 Identities=23% Similarity=0.422 Sum_probs=217.6
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECC-----CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCE
Q ss_conf 99972232211856624399999848-----9789999974697623099999999998625878953031079605621
Q 003555 507 ERATNGFEEELGRGCFGAVYKGSICE-----GNKIVAVKRLENPVEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKK 581 (811)
Q Consensus 507 ~~~~~~~~~~LG~G~~g~Vy~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~ 581 (811)
.+..+.+.++||+|+||+||+|++.. ++..||||+++.......++|.+|+.++++++|||||+++|+|.+.+..
T Consensus 11 ~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 11 KRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp CGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 88892982498207882999999877666778879999996777858999999999999858998886287999569989
Q ss_pred EEEEEECCCCCHHHHHHCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 4899506989988874148------------9998457899999999999998762168874623888896888799976
Q 003555 582 LLVYEFMSKGSLENLLSNV------------ESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTA 649 (811)
Q Consensus 582 ~lV~e~~~~gsL~~~l~~~------------~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ 649 (811)
+|||||+++|+|.++|... ...+++.+++.|+.||+.||.|||++ +|+||||||+|||+++++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCE
T ss_conf 999985899968999986086421112357778899999999999999999999759---90467657763898799868
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99705775225889876-1003445788668101136888863314889999999890-997888887752203477889
Q 003555 650 KISNFSLAKILMPNQTG-IVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVC-CRSNFEVNVSTADVVLLSTWV 727 (811)
Q Consensus 650 kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~ellt-g~~p~~~~~~~~~~~~l~~~~ 727 (811)
||+|||+++........ ......||+.|||||.+.+..++.++|||||||++|||+| |+.||......+ +
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~----~---- 239 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE----V---- 239 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH----H----
T ss_pred EECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH----H----
T ss_conf 98873001006788741664751347010388987079997036677889999999808999999989999----9----
Q ss_pred HHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 8753101100001786312768999999999882569999999989999994315699
Q 003555 728 YNCFIAKELSKLVGEDEEVDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTMEI 785 (811)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~~~ 785 (811)
......+. ....+...++++.+|+.+||+.||++||||.+|++.|+.+.+.
T Consensus 240 ~~~i~~~~-------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 240 IECITQGR-------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHHHTC-------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 99998089-------8899741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=396.64 Aligned_cols=265 Identities=24% Similarity=0.358 Sum_probs=217.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC-----CCCEEEEEEECCCCC-HHHHHHHHHHHHHHHCCCCCCCCCEECE
Q ss_conf 6956899997223221185662439999984-----897899999746976-2309999999999862587895303107
Q 003555 501 FSTGELERATNGFEEELGRGCFGAVYKGSIC-----EGNKIVAVKRLENPV-EEGERKFQAEMAAVRRTHHKNLVRLLGF 574 (811)
Q Consensus 501 ~~~~el~~~~~~~~~~LG~G~~g~Vy~~~~~-----~~~~~vavK~l~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~g~ 574 (811)
....|+...+.+|.++||+|+||+||+|.+. ..++.||||+++... ....++|.+|+.++++++|||||+++|+
T Consensus 18 ~~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~ 97 (308)
T 4gt4_A 18 AKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGV 97 (308)
T ss_dssp -CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 77222878888586691358884899999857765888869999998801496899999999999985899898773649
Q ss_pred EECCCCEEEEEEECCCCCHHHHHHCCC---------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 960562148995069899888741489---------------99845789999999999999876216887462388889
Q 003555 575 CMQTSKKLLVYEFMSKGSLENLLSNVE---------------SGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPR 639 (811)
Q Consensus 575 ~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~ 639 (811)
|.+....+|||||+++|+|.++|.... ..+++.++++|+.|||.||+|||++ +|+||||||+
T Consensus 98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~ 174 (308)
T 4gt4_A 98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATR 174 (308)
T ss_dssp ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGG
T ss_pred EEECCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCC
T ss_conf 9889988999981899949999986276543333221111246899999999999999999999868---9977873623
Q ss_pred CEEECCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 68887999769970577522588987-61003445788668101136888863314889999999890-99788888775
Q 003555 640 NILLDDSLTAKISNFSLAKILMPNQT-GIVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVC-CRSNFEVNVST 717 (811)
Q Consensus 640 NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~ellt-g~~p~~~~~~~ 717 (811)
|||+++++.+||+|||+++....... .......||+.|||||.+.+..++.++|||||||+||||+| |+.||......
T Consensus 175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~ 254 (308)
T 4gt4_A 175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ 254 (308)
T ss_dssp GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH
T ss_pred CEEECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 06887999789887602023367774047345125776569899827999963000157999999996899999998999
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 220347788987531011000017863127689999999998825699999999899999943156
Q 003555 718 ADVVLLSTWVYNCFIAKELSKLVGEDEEVDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTM 783 (811)
Q Consensus 718 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~ 783 (811)
+ + ......+. ....+...+..+.+|+.+||+.||.+||||.||++.|+...
T Consensus 255 ~----~----~~~i~~~~-------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 255 D----V----VEMIRNRQ-------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp H----H----HHHHHTTC-------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred H----H----HHHHHCCC-------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 9----9----99998199-------89996203699999999975879657929999999998531
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.41 Aligned_cols=266 Identities=26% Similarity=0.380 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEE
Q ss_conf 89999722322118566243999998489789999974697--6230999999999986258789530310796056214
Q 003555 505 ELERATNGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENP--VEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKL 582 (811)
Q Consensus 505 el~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~ 582 (811)
|+....+.+.++||+|+||+||+|++.. .||||+++.. ..+..+.|.+|+.++++++|||||+++|++.+ +..+
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred EECHHHEEEEEEEEECCCCEEEEEEECC---CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEE
T ss_conf 8747994984498208886899999899---68999997268999999999999999985899887469999978-9589
Q ss_pred EEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
Q ss_conf 89950698998887414899984578999999999999987621688746238888968887999769970577522588
Q 003555 583 LVYEFMSKGSLENLLSNVESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAKISNFSLAKILMP 662 (811)
Q Consensus 583 lV~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 662 (811)
|||||+++|+|.++|......+++.+++.|+.|||.||+|||++ +|+||||||+||||++++.+||+|||+|+....
T Consensus 108 iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp EEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred EEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 99974899878898752489999999999999999999999779---952785578997888999089944157542466
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 98-761003445788668101136---88886331488999999989099788888775220347788987531011000
Q 003555 663 NQ-TGIVTGVKGTRGYMSPEWQNS---GLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSK 738 (811)
Q Consensus 663 ~~-~~~~~~~~gt~~y~aPE~~~~---~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 738 (811)
.. ........||+.|||||++.. .+++.++|||||||+||||+||+.||......... ...+ ..+
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~---~~~~----~~~---- 253 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI---IFMV----GRG---- 253 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH---HHHH----HTT----
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHH----HCC----
T ss_conf 77640315644687724987861468998786877572899999999788998999969999---9999----658----
Q ss_pred HCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 01786-3127689999999998825699999999899999943156999999
Q 003555 739 LVGED-EEVDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTMEIPVVP 789 (811)
Q Consensus 739 ~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~ 789 (811)
...+. .......+..+.+|+.+||+.+|++||||.+|++.|+.+. .+.|+
T Consensus 254 ~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~-~~lpk 304 (307)
T 3omv_A 254 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ-HSLPK 304 (307)
T ss_dssp CCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH-TTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH-CCCCC
T ss_conf 8888720035445699999999975779768909899999999974-50789
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=384.28 Aligned_cols=265 Identities=25% Similarity=0.367 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCC-----CEEEEEEECCCCC-HHHHHHHHHHHHHHHCCCC-CCCCCEECEEE
Q ss_conf 689999722322118566243999998489-----7899999746976-2309999999999862587-89530310796
Q 003555 504 GELERATNGFEEELGRGCFGAVYKGSICEG-----NKIVAVKRLENPV-EEGERKFQAEMAAVRRTHH-KNLVRLLGFCM 576 (811)
Q Consensus 504 ~el~~~~~~~~~~LG~G~~g~Vy~~~~~~~-----~~~vavK~l~~~~-~~~~~~~~~e~~~l~~l~h-~niv~l~g~~~ 576 (811)
.|+....+.+.++||+|+||+||+|.+... .+.||||++.... ....+.|.+|+.++.+++| ||||+++|+|.
T Consensus 59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~ 138 (353)
T 4ase_A 59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT 138 (353)
T ss_dssp HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 17057995982098217895999999868885447759999997623586899999999999997579984877889999
Q ss_pred CC-CCEEEEEEECCCCCHHHHHHCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf 05-6214899506989988874148---------------9998457899999999999998762168874623888896
Q 003555 577 QT-SKKLLVYEFMSKGSLENLLSNV---------------ESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRN 640 (811)
Q Consensus 577 ~~-~~~~lV~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~N 640 (811)
+. ...+||||||++|+|.++|+.. ...+++.+++.++.|||.||.|||++ +|+||||||+|
T Consensus 139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~N 215 (353)
T 4ase_A 139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARN 215 (353)
T ss_dssp CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGG
T ss_pred ECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCCCC
T ss_conf 469779999983898979999974356665433341011035689999999999999998767627---84357467211
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 88879997699705775225889876-1003445788668101136888863314889999999890-997888887752
Q 003555 641 ILLDDSLTAKISNFSLAKILMPNQTG-IVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVC-CRSNFEVNVSTA 718 (811)
Q Consensus 641 Ill~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~ellt-g~~p~~~~~~~~ 718 (811)
||+++++.+||+|||+|+........ ......||+.|||||++.+..++.++|||||||+||||+| |+.||......+
T Consensus 216 ILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~ 295 (353)
T 4ase_A 216 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE 295 (353)
T ss_dssp EEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred EEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 30579997897965432224568872032540146665698999469999755374068999999818999999989899
Q ss_pred CHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 2034778898753101100001786312768999999999882569999999989999994315699
Q 003555 719 DVVLLSTWVYNCFIAKELSKLVGEDEEVDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTMEI 785 (811)
Q Consensus 719 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~~~ 785 (811)
... .....+ .+...+...+.++.+++.+||+.||++|||+.++++.|+.+++.
T Consensus 296 ~~~-------~~i~~g-------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 296 EFC-------RRLKEG-------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHH-------HHHHHT-------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHCC-------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 999-------999738-------98888865789999999997686966793999999999999987
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.22 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=210.3
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEEEEECC
Q ss_conf 72232211856624399999848978999997469762309999999999862587895303107960562148995069
Q 003555 510 TNGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENPVEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLVYEFMS 589 (811)
Q Consensus 510 ~~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV~e~~~ 589 (811)
.|.+.++||+|+||.||+|++..+++.||||++........+.+.+|+.+|+.++|||||++++++.+.+..+||||||+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 43861696248184899999999998999999862554689999999999985799898716899998999999996989
Q ss_pred CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89988874148999845789999999999999876216887462388889688879997699705775225889876100
Q 003555 590 KGSLENLLSNVESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAKISNFSLAKILMPNQTGIVT 669 (811)
Q Consensus 590 ~gsL~~~l~~~~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~ 669 (811)
+|+|.+++.. ..+++.++..++.||+.||.|||++ +|+||||||+|||++.++.+||+|||+++.+.... ....
T Consensus 232 gG~L~~~i~~--~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~ 305 (423)
T 4fie_A 232 GGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PRRK 305 (423)
T ss_dssp TEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-CCBC
T ss_pred CCCHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-CCCC
T ss_conf 9828988761--6989999999999999999999988---90446578777898589998980372654777887-6434
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCHH
Q ss_conf 34457886681011368888633148899999998909978888877522034778898753101100001786312768
Q 003555 670 GVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSKLVGEDEEVDLR 749 (811)
Q Consensus 670 ~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (811)
...||+.|||||++.+..++.++|||||||++|||++|+.||......+. + ..+ .............
T Consensus 306 ~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~---~-~~i---------~~~~~~~~~~~~~ 372 (423)
T 4fie_A 306 SLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---M-KMI---------RDNLPPRLKNLHK 372 (423)
T ss_dssp CCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH---H-HHH---------HHSCCCCCSCTTS
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---H-HHH---------HCCCCCCCCCCCC
T ss_conf 66647472799997799999689999999999999978799898699999---9-999---------7279988765012
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9999999998825699999999899999
Q 003555 750 TLETMVRVGLLCIQDEPNLRPSMKNVIL 777 (811)
Q Consensus 750 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 777 (811)
.+.++.+|+.+||+.||++|||+.|+++
T Consensus 373 ~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 373 VSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986789568909999960
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=381.83 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=210.0
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEEEEECC
Q ss_conf 72232211856624399999848978999997469762309999999999862587895303107960562148995069
Q 003555 510 TNGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENPVEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLVYEFMS 589 (811)
Q Consensus 510 ~~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV~e~~~ 589 (811)
.|.+.++||+|+||+||+|++..+++.||||++........+.+.+|+.+++.++|||||++++++.+.+..+|||||++
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred HCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 53870796027282999999989998999999852765689999999999986799899919999998999999996989
Q ss_pred CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89988874148999845789999999999999876216887462388889688879997699705775225889876100
Q 003555 590 KGSLENLLSNVESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAKISNFSLAKILMPNQTGIVT 669 (811)
Q Consensus 590 ~gsL~~~l~~~~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~ 669 (811)
+|+|.+++.. ..+++.++..++.||+.||.|||++ +|+||||||+|||++.++.+||+|||+++.+.... ....
T Consensus 155 gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~ 228 (346)
T 4fih_A 155 GGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PRRK 228 (346)
T ss_dssp TEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-CCBC
T ss_pred CCCHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-CCCC
T ss_conf 9808999871--8989999999999999999999988---83556278899788799988990275753667887-7534
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCHH
Q ss_conf 34457886681011368888633148899999998909978888877522034778898753101100001786312768
Q 003555 670 GVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSKLVGEDEEVDLR 749 (811)
Q Consensus 670 ~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (811)
...||+.|||||++.+..++.++||||+||++|||++|+.||......+. + ..+ .............
T Consensus 229 ~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~---~-~~i---------~~~~~~~~~~~~~ 295 (346)
T 4fih_A 229 SLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---M-KMI---------RDNLPPRLKNLHK 295 (346)
T ss_dssp CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH---H-HHH---------HHSSCCCCSCGGG
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---H-HHH---------HCCCCCCCCCCCC
T ss_conf 65627582799997799999689999999999999978799898599999---9-999---------7179998875022
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9999999998825699999999899999
Q 003555 750 TLETMVRVGLLCIQDEPNLRPSMKNVIL 777 (811)
Q Consensus 750 ~~~~l~~li~~cl~~dP~~RPs~~evl~ 777 (811)
.+.++.+|+.+||+.||++|||+.|+++
T Consensus 296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 296 VSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986799568909999960
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=380.16 Aligned_cols=251 Identities=20% Similarity=0.210 Sum_probs=208.7
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEEEEECCC
Q ss_conf 22322118566243999998489789999974697623099999999998625878953031079605621489950698
Q 003555 511 NGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENPVEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLVYEFMSK 590 (811)
Q Consensus 511 ~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV~e~~~~ 590 (811)
+.+.++||+|+||+||+|++..+++.||||+++... ...+|+.+++.++|||||++++++.++...+|||||+++
T Consensus 60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG 134 (336)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred EEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 176868513878099999988999899999978888-----699999999857998999399999989999999966599
Q ss_pred CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCCCC---
Q ss_conf 998887414899984578999999999999987621688746238888968887999-7699705775225889876---
Q 003555 591 GSLENLLSNVESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSL-TAKISNFSLAKILMPNQTG--- 666 (811)
Q Consensus 591 gsL~~~l~~~~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~-~~kl~DfGla~~~~~~~~~--- 666 (811)
|+|.++|.. ...+++.+...++.||+.||.|||++ +|+||||||+|||++.++ .+||+|||+|+........
T Consensus 135 g~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~ 210 (336)
T 4g3f_A 135 GSLGQLIKQ-MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210 (336)
T ss_dssp CBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC---------
T ss_pred CCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCCE
T ss_conf 869999987-69999999999999999999999988---90426167788799589997999627877685678765402
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf -1003445788668101136888863314889999999890997888887752203477889875310110000178631
Q 003555 667 -IVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSKLVGEDEE 745 (811)
Q Consensus 667 -~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 745 (811)
......||+.|||||++.+..++.++|||||||++|||++|+.||......+-.. ... ... .+...
T Consensus 211 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~---~i~-----~~~-----~~~~~ 277 (336)
T 4g3f_A 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL---KIA-----SEP-----PPIRE 277 (336)
T ss_dssp ---CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH---HHH-----HSC-----CGGGG
T ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHH-----CCC-----CCCHH
T ss_conf 21785455802008999889998908999999999999997869989989999999---998-----089-----98002
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 27689999999998825699999999899999943156
Q 003555 746 VDLRTLETMVRVGLLCIQDEPNLRPSMKNVILMLEGTM 783 (811)
Q Consensus 746 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~~~ 783 (811)
.+...+..+.+++.+||+.||.+|||+.|+++.|...+
T Consensus 278 ~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 278 IPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 58667999999999976289768959999999999997
No 9
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=379.25 Aligned_cols=249 Identities=18% Similarity=0.288 Sum_probs=208.7
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEEEEE
Q ss_conf 722322118566243999998489789999974697--623099999999998625878953031079605621489950
Q 003555 510 TNGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENP--VEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLVYEF 587 (811)
Q Consensus 510 ~~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV~e~ 587 (811)
+|.+.++||+|+||+||+|++..+++.||||++... .....+.+.+|+.++++++|||||++++++.+.+..+|||||
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy 104 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 55884797027793999999889998999999865878979999999999999877998989199999989999999948
Q ss_pred CCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 69899888741489-99845789999999999999876216887462388889688879997699705775225889876
Q 003555 588 MSKGSLENLLSNVE-SGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAKISNFSLAKILMPNQTG 666 (811)
Q Consensus 588 ~~~gsL~~~l~~~~-~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 666 (811)
+++|+|.++|...+ ..+++.+...|+.||+.||.|||++ +|+||||||+|||++.++.+||+|||+++..... ..
T Consensus 105 ~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~~ 180 (350)
T 4b9d_A 105 CEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-VE 180 (350)
T ss_dssp CTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-HH
T ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC-CC
T ss_conf 8998399999973899997899999999999999999989---9151359789979878999897646521440688-54
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCC
Q ss_conf 10034457886681011368888633148899999998909978888877522034778898753101100001786312
Q 003555 667 IVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSKLVGEDEEV 746 (811)
Q Consensus 667 ~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 746 (811)
......||+.|||||++.+..++.++|||||||++|||++|+.||......+- + . ....+.. ...
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~---~-~----~i~~~~~-------~~~ 245 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL---V-L----KIISGSF-------PPV 245 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---H-H----HHHHTCC-------CCC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---H-H----HHHCCCC-------CCC
T ss_conf 10145788360399998799989599999999999999978799899699999---9-9----9980899-------999
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 7689999999998825699999999899999
Q 003555 747 DLRTLETMVRVGLLCIQDEPNLRPSMKNVIL 777 (811)
Q Consensus 747 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 777 (811)
+...+.++.+|+.+||+.||++|||+.|+++
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 7557999999999985589667908999963
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=372.52 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=209.7
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCC---CHHHHHHHHHHHHHHHCCCCCCCCCEECEEECCCCEEEEEE
Q ss_conf 722322118566243999998489789999974697---62309999999999862587895303107960562148995
Q 003555 510 TNGFEEELGRGCFGAVYKGSICEGNKIVAVKRLENP---VEEGERKFQAEMAAVRRTHHKNLVRLLGFCMQTSKKLLVYE 586 (811)
Q Consensus 510 ~~~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~l~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~g~~~~~~~~~lV~e 586 (811)
.|.+.+.||+|+||+||++++..+++.||+|++... .....+.+.+|+.++++++|||||++++++.+.+..++|||
T Consensus 33 dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmE 112 (311)
T 4aw0_A 33 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLS 112 (311)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf 36898898316484999999999998999999888887797899999999999986799898919999973898999996
Q ss_pred ECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCC-
Q ss_conf 0698998887414899984578999999999999987621688746238888968887999769970577522588987-
Q 003555 587 FMSKGSLENLLSNVESGPIWRDRVRIALDVARGITYLHEECEVQIIHCNINPRNILLDDSLTAKISNFSLAKILMPNQT- 665 (811)
Q Consensus 587 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~- 665 (811)
|+++|+|.+++.. ...+++.+...++.||+.||.|||++ +|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 113 y~~gG~L~~~i~~-~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~ 188 (311)
T 4aw0_A 113 YAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 188 (311)
T ss_dssp CCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTC
T ss_pred CCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 4899899999987-49999999999999999999999988---7826878789969858988899876875025778776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf 61003445788668101136888863314889999999890997888887752203477889875310110000178631
Q 003555 666 GIVTGVKGTRGYMSPEWQNSGLITVKSDVYSFGVVVLEIVCCRSNFEVNVSTADVVLLSTWVYNCFIAKELSKLVGEDEE 745 (811)
Q Consensus 666 ~~~~~~~gt~~y~aPE~~~~~~~t~~~DV~SlGvll~elltg~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 745 (811)
.......||+.|||||++.+..++.++||||+||++|||++|+.||......+ .+ ..+......
T Consensus 189 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~-------------~~i~~~~~~ 252 (311)
T 4aw0_A 189 ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL---IF-------------AKIIKLEYD 252 (311)
T ss_dssp CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH-------------HHHHHTCCC
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HH-------------HHHHCCCCC
T ss_conf 54367556803079989768999968989989999999974989989979999---99-------------999719999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 2768999999999882569999999989999
Q 003555 746 VDLRTLETMVRVGLLCIQDEPNLRPSMKNVI 776 (811)
Q Consensus 746 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 776 (811)
.+...+.++.+|+.+||+.||++|||+.|++
T Consensus 253 ~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 253 FPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHC
T ss_conf 9965699999999997628975780967975
Done!