Query 003556
Match_columns 811
No_of_seqs 790 out of 3343
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0267 Microtubule severing p 100.0 2.9E-85 6.4E-90 721.0 38.4 767 1-808 8-808 (825)
2 PF13925 Katanin_con80: con80 100.0 5.6E-48 1.2E-52 378.8 13.9 161 648-808 1-164 (164)
3 KOG0271 Notchless-like WD40 re 100.0 3E-40 6.6E-45 342.5 26.8 298 9-308 108-450 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-39 3.8E-44 341.4 23.9 281 14-295 173-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 5.6E-38 1.2E-42 325.8 25.2 288 6-295 147-479 (480)
6 KOG0286 G-protein beta subunit 100.0 2.1E-36 4.5E-41 305.4 34.4 284 10-295 49-343 (343)
7 KOG0279 G protein beta subunit 100.0 4.6E-36 1E-40 301.5 33.7 290 6-297 5-313 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-37 5E-42 325.4 19.7 248 7-254 208-458 (459)
9 cd00200 WD40 WD40 domain, foun 100.0 8.1E-33 1.8E-37 289.1 38.0 286 9-295 2-289 (289)
10 KOG0295 WD40 repeat-containing 100.0 3.1E-34 6.8E-39 297.0 24.0 287 8-295 100-404 (406)
11 KOG0285 Pleiotropic regulator 100.0 1.3E-33 2.9E-38 291.1 25.3 286 10-298 145-440 (460)
12 KOG0263 Transcription initiati 100.0 5.9E-33 1.3E-37 312.2 28.9 256 5-261 367-654 (707)
13 KOG0273 Beta-transducin family 100.0 7.3E-32 1.6E-36 287.1 31.3 277 17-297 236-523 (524)
14 KOG0279 G protein beta subunit 100.0 6.6E-32 1.4E-36 271.6 28.7 249 5-256 52-313 (315)
15 KOG0315 G-protein beta subunit 100.0 9.9E-32 2.1E-36 266.1 29.1 279 28-308 9-299 (311)
16 KOG0266 WD40 repeat-containing 100.0 4.1E-31 8.9E-36 302.7 34.8 286 11-297 153-454 (456)
17 KOG0263 Transcription initiati 100.0 4E-32 8.7E-37 305.5 25.5 210 6-216 441-650 (707)
18 KOG0286 G-protein beta subunit 100.0 6.2E-31 1.3E-35 265.9 29.7 246 7-254 88-343 (343)
19 KOG0282 mRNA splicing factor [ 100.0 3.6E-32 7.8E-37 290.7 18.6 288 7-295 205-503 (503)
20 KOG0645 WD40 repeat protein [G 100.0 1E-29 2.2E-34 254.9 34.8 286 6-297 4-311 (312)
21 KOG0284 Polyadenylation factor 100.0 4.6E-32 9.9E-37 284.3 16.0 279 15-295 95-378 (464)
22 KOG0265 U5 snRNP-specific prot 100.0 2.7E-30 5.8E-35 262.3 27.9 287 7-295 38-336 (338)
23 KOG0273 Beta-transducin family 100.0 2.5E-30 5.5E-35 275.4 28.6 295 14-310 176-495 (524)
24 KOG0291 WD40-repeat-containing 100.0 1.5E-29 3.3E-34 281.5 34.2 294 8-302 299-617 (893)
25 KOG0315 G-protein beta subunit 100.0 1.5E-29 3.3E-34 250.7 29.9 262 5-269 29-301 (311)
26 KOG0318 WD40 repeat stress pro 100.0 2.3E-29 5.1E-34 270.9 33.8 287 10-297 184-602 (603)
27 PLN00181 protein SPA1-RELATED; 100.0 7.2E-29 1.6E-33 303.5 41.7 283 10-296 477-792 (793)
28 KOG0291 WD40-repeat-containing 100.0 6.6E-29 1.4E-33 276.5 36.4 290 12-302 261-555 (893)
29 KOG0296 Angio-associated migra 100.0 3E-29 6.4E-34 260.4 30.6 302 8-311 56-370 (399)
30 KOG0284 Polyadenylation factor 100.0 2.5E-31 5.5E-36 278.7 13.9 243 12-256 134-380 (464)
31 KOG0318 WD40 repeat stress pro 100.0 1.9E-28 4.2E-33 263.9 35.8 290 9-298 140-561 (603)
32 KOG0285 Pleiotropic regulator 100.0 4.8E-30 1E-34 264.9 22.6 251 52-302 144-394 (460)
33 KOG0276 Vesicle coat complex C 100.0 1.2E-29 2.7E-34 277.0 26.4 294 11-308 8-307 (794)
34 KOG0292 Vesicle coat complex C 100.0 2.4E-29 5.2E-34 283.0 28.7 284 8-306 43-357 (1202)
35 KOG0281 Beta-TrCP (transducin 100.0 1.2E-30 2.6E-35 268.0 14.7 273 15-301 196-481 (499)
36 cd00200 WD40 WD40 domain, foun 100.0 7.5E-28 1.6E-32 251.5 34.4 246 8-254 43-289 (289)
37 KOG0292 Vesicle coat complex C 100.0 7.6E-29 1.7E-33 279.0 28.4 292 10-302 3-326 (1202)
38 KOG0316 Conserved WD40 repeat- 100.0 1.4E-28 3E-33 242.0 26.6 283 7-295 8-297 (307)
39 KOG0266 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 282.1 29.5 247 8-255 195-453 (456)
40 KOG0295 WD40 repeat-containing 100.0 3.9E-29 8.5E-34 259.3 21.9 245 9-254 143-404 (406)
41 KOG0319 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 274.0 27.5 290 8-298 315-620 (775)
42 KOG0319 WD40-repeat-containing 100.0 1.8E-28 3.9E-33 273.2 23.9 308 4-311 135-591 (775)
43 KOG0643 Translation initiation 100.0 6.7E-28 1.5E-32 241.2 25.0 286 11-299 5-319 (327)
44 KOG0276 Vesicle coat complex C 100.0 5E-28 1.1E-32 264.5 25.5 254 4-258 43-300 (794)
45 KOG0293 WD40 repeat-containing 100.0 2.7E-28 5.8E-33 255.9 21.6 288 7-297 215-513 (519)
46 KOG0278 Serine/threonine kinas 100.0 3.7E-28 8.1E-33 240.7 18.7 289 10-302 8-302 (334)
47 KOG0283 WD40 repeat-containing 100.0 2.2E-27 4.8E-32 269.5 25.3 250 6-259 256-579 (712)
48 KOG0275 Conserved WD40 repeat- 100.0 3.2E-28 6.9E-33 248.0 16.4 280 14-295 211-507 (508)
49 KOG0306 WD40-repeat-containing 100.0 1E-26 2.2E-31 259.0 29.1 284 10-298 367-665 (888)
50 KOG0265 U5 snRNP-specific prot 100.0 7.2E-27 1.6E-31 237.4 24.2 263 51-314 39-313 (338)
51 KOG0274 Cdc4 and related F-box 100.0 2.2E-26 4.8E-31 264.3 31.2 278 15-303 207-488 (537)
52 KOG0296 Angio-associated migra 100.0 4.2E-26 9.1E-31 237.0 29.7 287 8-297 98-398 (399)
53 KOG0313 Microtubule binding pr 100.0 2E-26 4.3E-31 240.4 26.6 277 14-296 103-417 (423)
54 PLN00181 protein SPA1-RELATED; 100.0 8.3E-26 1.8E-30 276.6 36.6 239 15-255 531-792 (793)
55 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 3.1E-31 244.6 24.8 278 17-296 220-505 (506)
56 KOG0316 Conserved WD40 repeat- 99.9 3.4E-26 7.4E-31 225.2 23.9 248 51-302 9-262 (307)
57 KOG0281 Beta-TrCP (transducin 99.9 3.8E-28 8.3E-33 249.6 10.5 239 8-259 229-480 (499)
58 KOG0645 WD40 repeat protein [G 99.9 3.7E-25 8E-30 222.2 30.8 250 50-304 5-268 (312)
59 KOG0277 Peroxisomal targeting 99.9 3.6E-26 7.8E-31 227.5 23.0 278 19-296 11-308 (311)
60 PTZ00421 coronin; Provisional 99.9 2.6E-25 5.6E-30 255.0 33.6 228 11-238 70-314 (493)
61 KOG0305 Anaphase promoting com 99.9 7.8E-26 1.7E-30 251.4 28.0 273 21-299 182-463 (484)
62 KOG0283 WD40 repeat-containing 99.9 2.8E-26 6.1E-31 260.6 24.8 247 53-302 260-581 (712)
63 PTZ00421 coronin; Provisional 99.9 1.1E-24 2.3E-29 249.9 38.0 246 17-263 21-297 (493)
64 KOG1407 WD40 repeat protein [F 99.9 3E-25 6.5E-30 221.7 26.7 275 10-288 14-293 (313)
65 KOG1446 Histone H3 (Lys4) meth 99.9 4E-24 8.6E-29 219.6 35.2 291 9-303 7-309 (311)
66 KOG0274 Cdc4 and related F-box 99.9 2.3E-25 5.1E-30 255.9 29.1 250 6-264 238-490 (537)
67 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.9E-30 241.0 24.4 278 14-294 24-306 (487)
68 KOG0288 WD40 repeat protein Ti 99.9 1.6E-26 3.4E-31 243.3 16.8 280 10-294 169-458 (459)
69 KOG0973 Histone transcription 99.9 3.5E-25 7.6E-30 257.2 29.6 290 13-303 10-361 (942)
70 KOG0278 Serine/threonine kinas 99.9 2.8E-26 6.2E-31 227.4 15.9 249 9-262 52-303 (334)
71 KOG0640 mRNA cleavage stimulat 99.9 1.9E-25 4.1E-30 227.2 21.8 290 5-295 101-424 (430)
72 KOG0267 Microtubule severing p 99.9 9.9E-27 2.2E-31 258.4 13.7 353 28-387 3-364 (825)
73 KOG0282 mRNA splicing factor [ 99.9 2E-26 4.3E-31 246.8 15.4 258 50-308 205-473 (503)
74 KOG0277 Peroxisomal targeting 99.9 9.8E-26 2.1E-30 224.3 18.1 240 15-254 59-307 (311)
75 KOG0268 Sof1-like rRNA process 99.9 3.7E-26 8E-31 236.9 15.6 283 10-299 60-347 (433)
76 PTZ00420 coronin; Provisional 99.9 6.4E-24 1.4E-28 244.9 35.1 232 7-239 65-318 (568)
77 KOG0306 WD40-repeat-containing 99.9 6.8E-25 1.5E-29 244.5 25.3 247 7-257 405-665 (888)
78 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.3E-28 241.7 37.3 225 35-260 50-297 (568)
79 KOG0305 Anaphase promoting com 99.9 1.2E-24 2.5E-29 242.1 26.1 239 16-258 217-463 (484)
80 KOG0772 Uncharacterized conser 99.9 1.1E-24 2.4E-29 234.2 23.9 284 10-294 161-484 (641)
81 KOG0310 Conserved WD40 repeat- 99.9 9.8E-25 2.1E-29 234.3 23.2 238 12-253 64-305 (487)
82 KOG0313 Microtubule binding pr 99.9 2.9E-24 6.4E-29 224.2 25.0 250 4-256 132-418 (423)
83 KOG0300 WD40 repeat-containing 99.9 2.3E-24 5E-29 219.5 22.7 291 7-300 139-479 (481)
84 KOG0275 Conserved WD40 repeat- 99.9 4.2E-25 9.1E-30 225.3 16.4 255 57-312 211-482 (508)
85 KOG0301 Phospholipase A2-activ 99.9 5.4E-24 1.2E-28 236.2 26.1 281 10-302 8-293 (745)
86 KOG0264 Nucleosome remodeling 99.9 3.8E-24 8.2E-29 228.5 23.4 252 5-256 113-404 (422)
87 KOG0643 Translation initiation 99.9 4.1E-24 8.8E-29 214.2 21.1 250 6-258 42-319 (327)
88 KOG0289 mRNA splicing factor [ 99.9 8.8E-24 1.9E-28 223.6 24.5 247 8-255 253-505 (506)
89 KOG0294 WD40 repeat-containing 99.9 2.1E-23 4.6E-28 213.4 26.3 263 32-300 4-284 (362)
90 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 239.8 18.2 283 14-298 19-328 (735)
91 KOG0294 WD40 repeat-containing 99.9 2.8E-23 6.1E-28 212.5 26.3 245 7-258 34-283 (362)
92 KOG0293 WD40 repeat-containing 99.9 6.5E-24 1.4E-28 223.1 21.8 262 50-313 215-486 (519)
93 KOG0641 WD40 repeat protein [G 99.9 3.7E-22 7.9E-27 195.4 32.5 290 6-297 22-349 (350)
94 KOG0647 mRNA export protein (c 99.9 2.1E-23 4.5E-28 212.4 23.4 230 15-245 26-311 (347)
95 KOG0973 Histone transcription 99.9 2.1E-23 4.6E-28 242.5 26.6 252 8-260 61-359 (942)
96 KOG0639 Transducin-like enhanc 99.9 5.5E-24 1.2E-28 227.7 19.8 281 12-296 415-703 (705)
97 KOG1407 WD40 repeat protein [F 99.9 3.1E-23 6.7E-28 207.4 23.8 236 10-248 58-293 (313)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-21 6E-26 207.2 38.6 267 30-301 2-283 (300)
99 KOG1446 Histone H3 (Lys4) meth 99.9 7.3E-22 1.6E-26 203.0 31.6 254 52-307 7-272 (311)
100 KOG0288 WD40 repeat protein Ti 99.9 1.3E-23 2.9E-28 221.3 18.6 242 7-253 210-458 (459)
101 KOG0308 Conserved WD40 repeat- 99.9 1.3E-23 2.9E-28 231.4 18.3 291 9-300 66-396 (735)
102 KOG0299 U3 snoRNP-associated p 99.9 3E-22 6.4E-27 213.8 26.3 282 9-294 135-453 (479)
103 KOG0641 WD40 repeat protein [G 99.9 1.4E-21 3E-26 191.4 28.5 246 9-256 82-349 (350)
104 KOG0301 Phospholipase A2-activ 99.9 1.4E-22 3.1E-27 225.0 23.9 241 9-259 50-291 (745)
105 KOG2055 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 213.7 24.8 280 16-297 213-512 (514)
106 KOG0299 U3 snoRNP-associated p 99.9 2.1E-22 4.7E-27 214.9 22.1 232 13-248 199-446 (479)
107 KOG1539 WD repeat protein [Gen 99.9 3.1E-21 6.8E-26 217.9 31.7 290 4-295 190-646 (910)
108 KOG1408 WD40 repeat protein [F 99.9 4.8E-22 1E-26 219.9 24.6 298 4-301 357-717 (1080)
109 KOG2096 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 198.5 26.7 284 7-294 77-399 (420)
110 KOG1274 WD40 repeat protein [G 99.9 2.7E-21 5.9E-26 220.7 29.2 275 13-294 10-297 (933)
111 KOG0640 mRNA cleavage stimulat 99.9 2.8E-22 6E-27 204.2 18.2 248 8-256 164-426 (430)
112 KOG1273 WD40 repeat protein [G 99.9 4.8E-21 1E-25 195.9 26.6 276 19-298 26-323 (405)
113 KOG0646 WD40 repeat protein [G 99.9 7.6E-22 1.6E-26 211.2 20.8 223 15-239 80-331 (476)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.4E-20 1.8E-24 195.7 36.7 257 8-269 23-292 (300)
115 KOG1332 Vesicle coat complex C 99.9 8.1E-22 1.8E-26 195.6 17.7 243 12-255 7-285 (299)
116 KOG2048 WD40 repeat protein [G 99.9 6.3E-20 1.4E-24 203.9 34.3 287 7-297 16-319 (691)
117 KOG1036 Mitotic spindle checkp 99.9 1.2E-20 2.5E-25 193.3 26.4 265 16-287 13-294 (323)
118 KOG4283 Transcription-coupled 99.9 9.4E-21 2E-25 192.1 24.8 283 13-297 40-365 (397)
119 KOG0300 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 196.7 20.7 255 50-306 139-437 (481)
120 KOG2106 Uncharacterized conser 99.9 3.9E-20 8.4E-25 199.0 29.3 279 12-300 241-584 (626)
121 KOG0269 WD40 repeat-containing 99.9 8.1E-22 1.7E-26 221.2 14.7 231 18-249 89-332 (839)
122 KOG0772 Uncharacterized conser 99.9 6.1E-21 1.3E-25 205.5 20.8 238 16-254 214-485 (641)
123 KOG0302 Ribosome Assembly prot 99.9 1.3E-20 2.7E-25 196.9 21.6 242 11-254 146-436 (440)
124 KOG0264 Nucleosome remodeling 99.9 1.2E-20 2.7E-25 201.7 21.9 241 57-297 122-404 (422)
125 KOG0646 WD40 repeat protein [G 99.9 1.8E-20 3.9E-25 200.7 22.7 236 36-272 58-323 (476)
126 KOG0269 WD40 repeat-containing 99.9 4E-21 8.6E-26 215.7 16.9 279 17-298 40-341 (839)
127 KOG1036 Mitotic spindle checkp 99.9 5.5E-20 1.2E-24 188.4 23.4 230 12-247 50-294 (323)
128 KOG0639 Transducin-like enhanc 99.9 5.8E-21 1.3E-25 204.7 16.6 236 16-255 465-703 (705)
129 KOG1274 WD40 repeat protein [G 99.9 8.5E-20 1.8E-24 208.6 25.8 241 56-298 10-263 (933)
130 KOG2106 Uncharacterized conser 99.8 1.9E-18 4.2E-23 186.1 33.4 286 8-301 192-525 (626)
131 KOG1539 WD repeat protein [Gen 99.8 2.4E-18 5.1E-23 194.9 35.2 288 18-305 161-614 (910)
132 KOG4328 WD40 protein [Function 99.8 1.3E-19 2.8E-24 193.5 22.3 291 8-298 178-496 (498)
133 KOG0650 WD40 repeat nucleolar 99.8 2.2E-19 4.7E-24 196.6 23.3 282 9-294 393-732 (733)
134 KOG0268 Sof1-like rRNA process 99.8 2.8E-20 6.2E-25 193.4 15.5 243 8-258 101-347 (433)
135 KOG0647 mRNA export protein (c 99.8 5.6E-19 1.2E-23 180.3 24.1 239 57-299 25-283 (347)
136 KOG1408 WD40 repeat protein [F 99.8 8.1E-20 1.8E-24 202.5 19.5 242 15-257 458-714 (1080)
137 KOG4283 Transcription-coupled 99.8 4E-19 8.7E-24 180.3 22.3 203 56-259 40-279 (397)
138 KOG1063 RNA polymerase II elon 99.8 9.4E-19 2E-23 194.7 26.2 296 5-300 180-651 (764)
139 KOG1009 Chromatin assembly com 99.8 1.4E-18 3E-23 183.6 25.8 287 16-302 13-377 (434)
140 KOG0321 WD40 repeat-containing 99.8 3.8E-19 8.3E-24 196.2 22.5 291 15-306 46-400 (720)
141 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-17 9.7E-22 178.3 38.8 288 11-300 60-362 (466)
142 KOG2445 Nuclear pore complex c 99.8 1.8E-18 3.9E-23 176.9 25.3 241 13-255 10-317 (361)
143 KOG1332 Vesicle coat complex C 99.8 2.1E-19 4.6E-24 178.5 17.7 243 56-298 8-287 (299)
144 KOG0270 WD40 repeat-containing 99.8 5.6E-19 1.2E-23 188.3 20.3 241 19-259 176-452 (463)
145 KOG2445 Nuclear pore complex c 99.8 3.6E-18 7.9E-23 174.7 25.1 247 56-302 10-323 (361)
146 KOG2055 WD40 repeat protein [G 99.8 1.3E-18 2.7E-23 186.1 22.1 252 4-256 245-512 (514)
147 KOG0302 Ribosome Assembly prot 99.8 1.3E-18 2.8E-23 182.0 20.4 202 56-258 148-380 (440)
148 COG2319 FOG: WD40 repeat [Gene 99.8 2.5E-16 5.5E-21 172.4 39.5 288 7-298 146-443 (466)
149 KOG1273 WD40 repeat protein [G 99.8 9.9E-18 2.1E-22 171.8 24.0 245 62-309 26-292 (405)
150 KOG1034 Transcriptional repres 99.8 2.5E-18 5.5E-23 177.2 19.4 240 14-256 87-381 (385)
151 KOG0321 WD40 repeat-containing 99.8 2E-18 4.3E-23 190.6 19.3 251 8-260 92-395 (720)
152 KOG1538 Uncharacterized conser 99.8 4.4E-18 9.6E-23 187.4 21.1 281 18-308 14-304 (1081)
153 KOG2048 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 180.1 30.0 290 6-300 58-364 (691)
154 KOG4378 Nuclear protein COP1 [ 99.8 1.7E-18 3.7E-23 185.8 16.7 218 20-239 83-305 (673)
155 KOG0270 WD40 repeat-containing 99.8 1E-17 2.2E-22 178.8 22.2 239 61-300 175-452 (463)
156 KOG4328 WD40 protein [Function 99.8 8.6E-18 1.9E-22 179.7 20.1 255 2-257 220-494 (498)
157 KOG1272 WD40-repeat-containing 99.8 6.4E-19 1.4E-23 188.3 10.5 287 59-352 129-420 (545)
158 KOG2096 WD40 repeat protein [G 99.8 3.4E-17 7.5E-22 168.0 22.2 236 18-255 134-401 (420)
159 KOG1063 RNA polymerase II elon 99.8 6.3E-17 1.4E-21 180.3 26.0 287 13-300 264-702 (764)
160 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-17 2.9E-22 179.0 19.7 262 18-280 36-305 (673)
161 KOG0307 Vesicle coat complex C 99.8 2E-18 4.3E-23 202.1 14.6 244 16-259 64-330 (1049)
162 KOG1034 Transcriptional repres 99.8 5.2E-17 1.1E-21 167.5 23.3 290 4-296 24-382 (385)
163 KOG1445 Tumor-specific antigen 99.8 4.5E-17 9.8E-22 178.8 20.8 126 5-130 68-199 (1012)
164 KOG0642 Cell-cycle nuclear pro 99.7 8.6E-18 1.9E-22 183.9 14.3 250 11-262 289-567 (577)
165 KOG0307 Vesicle coat complex C 99.7 4.7E-18 1E-22 199.0 12.4 279 21-300 11-330 (1049)
166 PRK11028 6-phosphogluconolacto 99.7 7.6E-15 1.6E-19 161.7 34.9 265 31-298 4-305 (330)
167 KOG0303 Actin-binding protein 99.7 1.7E-16 3.8E-21 166.9 19.9 207 11-219 76-298 (472)
168 KOG1007 WD repeat protein TSSC 99.7 2.3E-16 4.9E-21 160.2 19.5 238 10-249 57-353 (370)
169 KOG2110 Uncharacterized conser 99.7 1.6E-14 3.5E-19 151.6 33.8 288 16-311 5-344 (391)
170 KOG1188 WD40 repeat protein [G 99.7 3E-16 6.6E-21 162.8 20.1 266 30-296 41-345 (376)
171 KOG4227 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 162.4 21.8 289 5-295 45-385 (609)
172 KOG1524 WD40 repeat-containing 99.7 2E-16 4.2E-21 171.5 18.3 263 14-293 12-282 (737)
173 KOG2919 Guanine nucleotide-bin 99.7 1.7E-15 3.6E-20 156.1 23.7 237 19-257 52-328 (406)
174 KOG0650 WD40 repeat nucleolar 99.7 5.9E-16 1.3E-20 169.9 21.4 241 51-294 392-677 (733)
175 KOG2919 Guanine nucleotide-bin 99.7 5.3E-16 1.1E-20 159.7 19.3 238 16-256 104-367 (406)
176 KOG1009 Chromatin assembly com 99.7 1.5E-15 3.1E-20 160.9 21.2 247 9-257 58-373 (434)
177 KOG1538 Uncharacterized conser 99.7 6.7E-16 1.5E-20 170.5 19.2 244 4-256 41-293 (1081)
178 KOG0303 Actin-binding protein 99.7 2.1E-15 4.5E-20 158.9 19.2 205 95-300 75-297 (472)
179 KOG0649 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 144.5 23.6 231 61-298 12-275 (325)
180 KOG0322 G-protein beta subunit 99.7 1.1E-15 2.4E-20 153.8 16.2 244 9-255 7-322 (323)
181 KOG1963 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 168.2 25.0 288 14-303 203-589 (792)
182 KOG1587 Cytoplasmic dynein int 99.7 2E-14 4.3E-19 164.9 28.2 265 39-303 222-522 (555)
183 KOG0649 WD40 repeat protein [G 99.7 5.1E-14 1.1E-18 140.3 26.9 224 4-238 50-296 (325)
184 KOG0644 Uncharacterized conser 99.7 7.5E-17 1.6E-21 182.1 7.6 281 8-299 182-470 (1113)
185 KOG1517 Guanine nucleotide bin 99.7 5E-15 1.1E-19 171.2 22.5 286 15-301 1063-1385(1387)
186 KOG1587 Cytoplasmic dynein int 99.7 7.1E-15 1.5E-19 168.5 23.3 243 15-257 241-517 (555)
187 PRK11028 6-phosphogluconolacto 99.7 7.8E-14 1.7E-18 153.6 30.5 246 8-257 27-305 (330)
188 KOG0290 Conserved WD40 repeat- 99.7 7E-15 1.5E-19 149.7 19.4 237 14-253 94-362 (364)
189 KOG1524 WD40 repeat-containing 99.6 1.3E-14 2.7E-19 157.6 21.7 207 30-253 76-282 (737)
190 KOG1523 Actin-related protein 99.6 2.4E-14 5.2E-19 147.8 20.6 238 9-247 3-269 (361)
191 KOG1240 Protein kinase contain 99.6 7E-14 1.5E-18 164.3 26.7 218 5-222 1037-1280(1431)
192 KOG0642 Cell-cycle nuclear pro 99.6 5.4E-15 1.2E-19 162.2 14.8 221 4-226 332-572 (577)
193 KOG1272 WD40-repeat-containing 99.6 1.3E-15 2.8E-20 163.3 9.5 231 17-254 130-360 (545)
194 PRK01742 tolB translocation pr 99.6 4E-14 8.6E-19 161.7 22.3 220 9-238 196-426 (429)
195 KOG1007 WD repeat protein TSSC 99.6 2.1E-14 4.6E-19 146.1 17.3 200 14-216 121-362 (370)
196 KOG2394 WD40 protein DMR-N9 [G 99.6 4.3E-14 9.3E-19 154.0 20.4 278 19-303 126-458 (636)
197 KOG1188 WD40 repeat protein [G 99.6 3.5E-14 7.6E-19 147.6 18.8 190 72-261 41-247 (376)
198 KOG1523 Actin-related protein 99.6 8.2E-14 1.8E-18 143.9 21.2 240 58-297 9-278 (361)
199 KOG0322 G-protein beta subunit 99.6 1.5E-14 3.3E-19 145.6 14.8 245 50-296 5-322 (323)
200 PRK01742 tolB translocation pr 99.6 2.4E-13 5.2E-18 155.3 25.9 207 38-255 183-400 (429)
201 KOG1445 Tumor-specific antigen 99.6 3.2E-14 7E-19 156.7 16.3 241 67-310 587-855 (1012)
202 KOG1963 WD40 repeat protein [G 99.6 2E-12 4.4E-17 148.8 30.1 294 4-302 4-380 (792)
203 KOG1310 WD40 repeat protein [G 99.6 1.9E-14 4.1E-19 156.7 12.8 215 7-222 41-310 (758)
204 KOG0771 Prolactin regulatory e 99.6 5.2E-14 1.1E-18 150.3 15.2 195 20-216 148-355 (398)
205 KOG0771 Prolactin regulatory e 99.6 5.6E-14 1.2E-18 150.1 15.3 194 63-257 148-355 (398)
206 KOG2139 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 136.3 25.2 277 17-298 99-432 (445)
207 KOG0290 Conserved WD40 repeat- 99.5 1.4E-12 3E-17 133.1 24.0 281 5-288 34-357 (364)
208 KOG2111 Uncharacterized conser 99.5 9.8E-12 2.1E-16 128.7 30.2 234 18-257 7-257 (346)
209 KOG1240 Protein kinase contain 99.5 7.3E-13 1.6E-17 155.9 24.6 258 44-302 1034-1339(1431)
210 KOG1334 WD40 repeat protein [G 99.5 5.2E-14 1.1E-18 151.9 13.8 289 9-298 135-467 (559)
211 KOG2110 Uncharacterized conser 99.5 4E-12 8.6E-17 133.8 27.3 235 59-300 5-251 (391)
212 KOG4227 WD40 repeat protein [G 99.5 4.7E-13 1E-17 140.6 20.3 246 53-298 50-323 (609)
213 KOG1517 Guanine nucleotide bin 99.5 4.6E-13 1E-17 155.2 21.1 240 17-258 1110-1383(1387)
214 PRK03629 tolB translocation pr 99.5 4.1E-12 9E-17 145.0 27.7 222 10-237 192-427 (429)
215 KOG2394 WD40 protein DMR-N9 [G 99.5 1.9E-13 4E-18 149.1 14.8 138 16-153 219-384 (636)
216 KOG3881 Uncharacterized conser 99.5 1.2E-12 2.6E-17 138.6 20.4 224 10-238 99-342 (412)
217 PRK05137 tolB translocation pr 99.5 1E-11 2.2E-16 142.3 29.7 203 39-247 182-396 (435)
218 KOG1310 WD40 repeat protein [G 99.5 1.4E-13 3.1E-18 149.9 13.0 208 53-260 44-307 (758)
219 PF02239 Cytochrom_D1: Cytochr 99.5 7.5E-11 1.6E-15 131.5 34.1 296 7-306 27-356 (369)
220 KOG2321 WD40 repeat protein [G 99.5 7.4E-12 1.6E-16 137.7 25.0 276 14-295 49-341 (703)
221 PRK03629 tolB translocation pr 99.5 2.9E-11 6.3E-16 138.1 30.5 203 40-248 180-394 (429)
222 KOG0644 Uncharacterized conser 99.5 8.1E-14 1.8E-18 158.0 9.2 251 52-312 183-442 (1113)
223 PRK04922 tolB translocation pr 99.5 2.1E-11 4.6E-16 139.5 29.3 203 39-247 184-398 (433)
224 KOG2111 Uncharacterized conser 99.5 3.5E-11 7.6E-16 124.7 27.1 174 39-216 75-257 (346)
225 KOG4497 Uncharacterized conser 99.5 1.5E-11 3.2E-16 127.5 24.0 268 17-289 49-424 (447)
226 PRK04922 tolB translocation pr 99.5 1.2E-11 2.6E-16 141.5 26.2 222 9-237 196-432 (433)
227 PRK02889 tolB translocation pr 99.5 8.4E-12 1.8E-16 142.5 24.0 223 10-238 189-425 (427)
228 PRK02889 tolB translocation pr 99.4 1.8E-11 4E-16 139.7 26.1 204 39-248 176-391 (427)
229 PRK05137 tolB translocation pr 99.4 3E-11 6.4E-16 138.4 27.8 223 8-237 193-432 (435)
230 KOG4497 Uncharacterized conser 99.4 1.5E-11 3.3E-16 127.3 21.9 275 21-301 13-395 (447)
231 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4.1E-16 124.3 21.7 149 105-258 9-181 (194)
232 PF08662 eIF2A: Eukaryotic tra 99.4 2.8E-11 6E-16 123.1 22.0 155 63-223 9-186 (194)
233 PF10282 Lactonase: Lactonase, 99.4 3.3E-09 7.1E-14 117.8 39.8 273 32-305 2-332 (345)
234 KOG2139 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 126.6 21.0 193 60-256 99-309 (445)
235 KOG3881 Uncharacterized conser 99.4 3.9E-11 8.4E-16 127.3 21.8 242 17-261 56-325 (412)
236 PF02239 Cytochrom_D1: Cytochr 99.4 4.3E-10 9.3E-15 125.4 31.5 271 30-302 6-307 (369)
237 KOG1334 WD40 repeat protein [G 99.4 5.4E-12 1.2E-16 136.6 14.9 284 52-336 135-462 (559)
238 TIGR02800 propeller_TolB tol-p 99.4 3.2E-10 6.9E-15 128.9 29.7 204 39-248 170-385 (417)
239 KOG0280 Uncharacterized conser 99.4 1.5E-10 3.3E-15 118.8 23.5 286 11-300 9-336 (339)
240 PRK00178 tolB translocation pr 99.3 4.2E-10 9E-15 128.8 27.6 224 9-238 191-428 (430)
241 PF10282 Lactonase: Lactonase, 99.3 9E-09 2E-13 114.3 37.4 243 15-258 35-324 (345)
242 PRK00178 tolB translocation pr 99.3 1E-09 2.2E-14 125.5 29.6 203 40-248 180-394 (430)
243 KOG4547 WD40 repeat-containing 99.3 6.1E-10 1.3E-14 123.9 25.0 187 69-257 3-221 (541)
244 TIGR02800 propeller_TolB tol-p 99.3 6.9E-10 1.5E-14 126.2 26.1 220 9-235 182-416 (417)
245 PRK01029 tolB translocation pr 99.3 1.5E-09 3.2E-14 123.9 28.1 225 12-239 180-426 (428)
246 KOG2315 Predicted translation 99.3 2E-09 4.4E-14 119.0 27.7 276 16-302 34-395 (566)
247 PRK04792 tolB translocation pr 99.3 9.8E-10 2.1E-14 126.2 26.2 220 12-237 213-446 (448)
248 PRK01029 tolB translocation pr 99.2 4.5E-09 9.7E-14 120.0 29.5 219 39-260 165-407 (428)
249 PRK04792 tolB translocation pr 99.2 5.1E-09 1.1E-13 120.3 30.0 202 40-247 199-412 (448)
250 KOG0974 WD-repeat protein WDR6 99.2 1.9E-10 4.1E-15 134.7 17.2 196 17-216 88-289 (967)
251 KOG4547 WD40 repeat-containing 99.2 2.9E-09 6.4E-14 118.6 25.0 188 27-216 3-221 (541)
252 KOG1354 Serine/threonine prote 99.2 9.8E-10 2.1E-14 114.8 19.3 244 59-303 25-365 (433)
253 KOG1354 Serine/threonine prote 99.2 1.1E-09 2.5E-14 114.3 19.0 242 15-259 24-362 (433)
254 COG2706 3-carboxymuconate cycl 99.2 5.7E-08 1.2E-12 103.2 31.7 260 38-298 15-322 (346)
255 KOG2041 WD40 repeat protein [G 99.2 1.6E-09 3.6E-14 121.5 20.9 262 15-279 13-319 (1189)
256 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.3E-07 2.8E-12 103.8 35.7 259 39-303 27-336 (352)
257 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.6E-15 141.3 12.9 197 12-224 2204-2407(2439)
258 KOG2315 Predicted translation 99.2 6.3E-09 1.4E-13 115.2 24.1 230 20-258 129-392 (566)
259 TIGR03300 assembly_YfgL outer 99.2 3.8E-08 8.2E-13 110.6 31.3 263 30-303 66-344 (377)
260 KOG2321 WD40 repeat protein [G 99.1 3.1E-09 6.7E-14 117.4 21.0 193 63-257 137-344 (703)
261 KOG4190 Uncharacterized conser 99.1 1.4E-10 3.1E-15 126.5 10.3 241 6-253 725-985 (1034)
262 KOG0974 WD-repeat protein WDR6 99.1 2.3E-09 4.9E-14 125.8 18.4 196 60-258 88-290 (967)
263 KOG1409 Uncharacterized conser 99.1 2.5E-09 5.4E-14 112.0 16.7 212 4-216 12-271 (404)
264 TIGR03300 assembly_YfgL outer 99.1 5.6E-08 1.2E-12 109.2 28.6 255 29-294 105-376 (377)
265 TIGR02658 TTQ_MADH_Hv methylam 99.1 3E-07 6.4E-12 101.1 32.8 240 24-268 53-343 (352)
266 PLN02919 haloacid dehalogenase 99.0 2.9E-07 6.3E-12 115.5 35.5 238 20-260 571-892 (1057)
267 KOG0280 Uncharacterized conser 99.0 1.5E-08 3.3E-13 104.3 19.5 227 17-245 70-319 (339)
268 COG2706 3-carboxymuconate cycl 99.0 6.4E-07 1.4E-11 95.4 31.3 250 8-259 31-324 (346)
269 PF04762 IKI3: IKI3 family; I 99.0 6.1E-07 1.3E-11 110.7 34.2 281 16-302 75-461 (928)
270 PF08450 SGL: SMP-30/Gluconola 99.0 1.3E-06 2.9E-11 92.1 32.2 218 21-246 4-244 (246)
271 KOG1064 RAVE (regulator of V-A 99.0 3.5E-09 7.5E-14 129.1 13.7 190 59-263 2208-2405(2439)
272 COG5354 Uncharacterized protei 99.0 2.6E-07 5.5E-12 101.5 26.7 278 17-302 72-400 (561)
273 PRK04043 tolB translocation pr 99.0 8.5E-07 1.8E-11 100.9 31.6 200 39-247 169-387 (419)
274 KOG1912 WD40 repeat protein [G 99.0 3.8E-08 8.3E-13 112.0 20.2 289 15-306 14-373 (1062)
275 KOG1832 HIV-1 Vpr-binding prot 99.0 2.7E-10 5.7E-15 130.2 3.1 224 5-246 1090-1320(1516)
276 KOG2314 Translation initiation 98.9 2.2E-07 4.8E-12 102.7 24.8 284 14-302 248-578 (698)
277 COG5354 Uncharacterized protei 98.9 2.1E-07 4.7E-12 102.1 24.0 279 15-302 31-353 (561)
278 PF04762 IKI3: IKI3 family; I 98.9 1.6E-06 3.5E-11 107.1 34.8 238 17-259 22-336 (928)
279 KOG2314 Translation initiation 98.9 2.7E-07 5.8E-12 102.0 24.4 272 20-298 214-526 (698)
280 COG4946 Uncharacterized protei 98.9 1.1E-06 2.3E-11 95.8 27.8 249 28-284 235-505 (668)
281 PF13360 PQQ_2: PQQ-like domai 98.9 7.3E-07 1.6E-11 92.9 25.9 216 80-302 2-235 (238)
282 KOG4190 Uncharacterized conser 98.9 5.7E-09 1.2E-13 114.2 9.9 239 52-294 728-985 (1034)
283 KOG2041 WD40 repeat protein [G 98.9 9.8E-08 2.1E-12 107.6 19.5 244 10-258 65-339 (1189)
284 PLN02919 haloacid dehalogenase 98.9 1.8E-06 3.8E-11 108.5 33.2 236 63-301 571-892 (1057)
285 PRK04043 tolB translocation pr 98.9 8.9E-07 1.9E-11 100.7 27.9 194 18-218 189-403 (419)
286 KOG0309 Conserved WD40 repeat- 98.9 4.1E-08 8.9E-13 111.1 16.0 282 16-299 24-341 (1081)
287 KOG4532 WD40-like repeat conta 98.8 5.2E-07 1.1E-11 92.0 21.2 228 29-256 84-331 (344)
288 PRK11138 outer membrane biogen 98.8 1.6E-06 3.4E-11 98.2 27.9 257 31-296 122-393 (394)
289 PF13360 PQQ_2: PQQ-like domai 98.8 2E-06 4.3E-11 89.6 25.5 217 37-260 1-234 (238)
290 COG5170 CDC55 Serine/threonine 98.8 1.5E-07 3.2E-12 97.4 16.0 241 59-300 26-370 (460)
291 KOG0882 Cyclophilin-related pe 98.8 7.4E-08 1.6E-12 104.1 14.3 249 14-264 7-313 (558)
292 KOG1912 WD40 repeat protein [G 98.8 4.7E-07 1E-11 103.3 21.2 237 60-298 16-305 (1062)
293 PF07433 DUF1513: Protein of u 98.8 1.3E-05 2.9E-10 85.4 29.9 225 20-249 8-278 (305)
294 PRK11138 outer membrane biogen 98.8 3.8E-06 8.2E-11 95.1 27.7 263 31-302 71-358 (394)
295 KOG1409 Uncharacterized conser 98.7 2.9E-07 6.2E-12 96.8 16.6 251 49-302 14-275 (404)
296 COG5170 CDC55 Serine/threonine 98.7 2.9E-07 6.4E-12 95.3 16.3 236 15-253 25-364 (460)
297 COG4946 Uncharacterized protei 98.7 2E-06 4.3E-11 93.7 22.6 176 24-204 327-507 (668)
298 KOG4714 Nucleoporin [Nuclear s 98.7 1.6E-07 3.4E-12 95.4 13.0 195 19-216 39-255 (319)
299 KOG4649 PQQ (pyrrolo-quinoline 98.7 1.9E-05 4.2E-10 80.6 27.1 117 22-140 16-132 (354)
300 PF08450 SGL: SMP-30/Gluconola 98.6 0.00011 2.3E-09 77.5 33.1 213 63-283 3-241 (246)
301 KOG3914 WD repeat protein WDR4 98.6 3.3E-07 7.1E-12 98.4 13.6 158 21-182 67-232 (390)
302 PF07433 DUF1513: Protein of u 98.6 3.9E-05 8.4E-10 81.9 28.5 223 62-288 7-277 (305)
303 KOG2695 WD40 repeat protein [G 98.6 2E-07 4.4E-12 97.9 10.8 159 75-236 228-401 (425)
304 KOG4532 WD40-like repeat conta 98.6 7.2E-06 1.6E-10 83.9 21.1 222 37-264 50-290 (344)
305 KOG0309 Conserved WD40 repeat- 98.6 1.5E-07 3.2E-12 106.7 9.9 206 11-216 109-340 (1081)
306 KOG3914 WD repeat protein WDR4 98.6 6.6E-07 1.4E-11 96.1 12.9 161 61-224 64-232 (390)
307 KOG1275 PAB-dependent poly(A) 98.5 1.3E-06 2.8E-11 101.7 15.9 180 29-213 147-340 (1118)
308 KOG2695 WD40 repeat protein [G 98.5 1.9E-07 4.1E-12 98.2 7.6 169 23-194 218-401 (425)
309 KOG2066 Vacuolar assembly/sort 98.5 4.1E-06 8.9E-11 96.7 18.4 181 60-256 40-233 (846)
310 KOG1275 PAB-dependent poly(A) 98.5 2.2E-06 4.8E-11 99.7 16.0 180 70-254 146-340 (1118)
311 cd00216 PQQ_DH Dehydrogenases 98.5 5.5E-05 1.2E-09 88.1 27.8 267 31-303 63-430 (488)
312 KOG4714 Nucleoporin [Nuclear s 98.5 6.5E-07 1.4E-11 91.1 9.8 166 8-174 81-255 (319)
313 KOG1645 RING-finger-containing 98.5 4.2E-06 9E-11 89.9 16.3 246 7-257 184-462 (463)
314 KOG2066 Vacuolar assembly/sort 98.5 3.3E-06 7.1E-11 97.5 16.1 181 101-297 39-233 (846)
315 PF15492 Nbas_N: Neuroblastoma 98.4 6E-05 1.3E-09 78.4 22.7 196 19-226 46-270 (282)
316 KOG1920 IkappaB kinase complex 98.4 0.00018 4E-09 86.8 29.2 198 60-259 69-325 (1265)
317 PF15492 Nbas_N: Neuroblastoma 98.4 0.00031 6.8E-09 73.2 26.9 233 22-267 3-270 (282)
318 KOG1832 HIV-1 Vpr-binding prot 98.4 1.5E-07 3.3E-12 108.2 2.4 201 50-264 1092-1299(1516)
319 KOG1645 RING-finger-containing 98.3 6.6E-05 1.4E-09 80.9 21.0 252 41-297 175-461 (463)
320 KOG2114 Vacuolar assembly/sort 98.3 6.9E-05 1.5E-09 87.4 21.9 220 18-245 27-271 (933)
321 KOG2114 Vacuolar assembly/sort 98.3 8.9E-05 1.9E-09 86.6 22.7 199 66-265 30-252 (933)
322 PRK02888 nitrous-oxide reducta 98.3 0.00031 6.6E-09 81.6 26.7 260 31-298 68-405 (635)
323 KOG1920 IkappaB kinase complex 98.3 0.00024 5.2E-09 85.8 26.2 216 17-238 69-345 (1265)
324 PRK02888 nitrous-oxide reducta 98.2 0.00073 1.6E-08 78.5 26.8 210 67-285 200-449 (635)
325 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0024 5.2E-08 65.7 26.3 144 70-215 22-165 (354)
326 PF08596 Lgl_C: Lethal giant l 98.1 0.00085 1.8E-08 75.6 25.7 235 18-254 3-333 (395)
327 KOG3617 WD40 and TPR repeat-co 98.1 6.1E-05 1.3E-09 87.1 16.2 189 16-215 15-220 (1416)
328 PF00400 WD40: WD domain, G-be 98.1 1.2E-05 2.6E-10 58.9 6.8 39 91-129 1-39 (39)
329 PF00400 WD40: WD domain, G-be 98.1 1.3E-05 2.8E-10 58.7 6.8 39 175-213 1-39 (39)
330 PF06977 SdiA-regulated: SdiA- 98.1 0.0018 3.9E-08 68.2 25.0 200 10-212 15-247 (248)
331 KOG0882 Cyclophilin-related pe 98.0 2.6E-05 5.7E-10 84.8 10.2 204 58-262 8-237 (558)
332 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0084 1.8E-07 70.4 32.0 188 31-220 71-338 (527)
333 cd00216 PQQ_DH Dehydrogenases 98.0 0.0039 8.4E-08 72.8 28.5 229 30-267 111-435 (488)
334 PF00780 CNH: CNH domain; Int 97.9 0.0074 1.6E-07 64.5 27.6 230 69-310 5-268 (275)
335 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0039 8.5E-08 69.5 26.1 245 38-285 22-345 (353)
336 PF06977 SdiA-regulated: SdiA- 97.9 0.0029 6.2E-08 66.7 23.4 193 54-248 16-242 (248)
337 COG3391 Uncharacterized conser 97.9 0.0059 1.3E-07 68.9 27.4 217 19-238 76-309 (381)
338 COG3391 Uncharacterized conser 97.9 0.015 3.2E-07 65.6 30.6 241 18-262 32-289 (381)
339 KOG1008 Uncharacterized conser 97.9 4.6E-06 1E-10 94.0 1.9 196 17-215 57-275 (783)
340 PF06433 Me-amine-dh_H: Methyl 97.9 0.023 4.9E-07 61.8 29.5 265 39-309 17-332 (342)
341 KOG3621 WD40 repeat-containing 97.9 0.00013 2.8E-09 83.7 12.8 196 58-256 32-244 (726)
342 PF04053 Coatomer_WDAD: Coatom 97.8 0.0084 1.8E-07 68.6 27.2 175 58-252 31-219 (443)
343 PF00780 CNH: CNH domain; Int 97.8 0.014 3.1E-07 62.4 27.7 224 28-266 6-265 (275)
344 COG0823 TolB Periplasmic compo 97.8 0.0015 3.2E-08 74.4 20.5 196 6-205 182-389 (425)
345 KOG3621 WD40 repeat-containing 97.8 0.001 2.2E-08 76.6 19.0 132 28-160 44-186 (726)
346 COG3386 Gluconolactonase [Carb 97.8 0.0074 1.6E-07 65.7 25.0 221 22-248 30-276 (307)
347 PF11768 DUF3312: Protein of u 97.8 0.0028 6E-08 72.2 22.0 113 103-218 207-332 (545)
348 KOG3617 WD40 and TPR repeat-co 97.8 0.00049 1.1E-08 79.9 16.0 230 19-252 62-380 (1416)
349 COG0823 TolB Periplasmic compo 97.8 0.0011 2.4E-08 75.4 19.1 194 49-246 182-388 (425)
350 PF04841 Vps16_N: Vps16, N-ter 97.8 0.022 4.8E-07 64.9 29.4 206 40-254 62-285 (410)
351 PF08553 VID27: VID27 cytoplas 97.7 0.0015 3.2E-08 78.5 19.4 194 15-214 429-646 (794)
352 PF02897 Peptidase_S9_N: Proly 97.7 0.039 8.5E-07 62.8 30.5 241 62-305 126-412 (414)
353 PF11768 DUF3312: Protein of u 97.7 0.0025 5.5E-08 72.5 19.8 118 14-133 203-331 (545)
354 PF02897 Peptidase_S9_N: Proly 97.7 0.034 7.3E-07 63.3 28.9 225 19-245 126-388 (414)
355 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.023 4.9E-07 63.5 24.9 228 16-247 42-347 (353)
356 PF04053 Coatomer_WDAD: Coatom 97.5 0.025 5.4E-07 64.8 25.1 227 8-256 24-262 (443)
357 PF06433 Me-amine-dh_H: Methyl 97.5 0.13 2.7E-06 56.2 28.1 239 22-265 41-329 (342)
358 PF08553 VID27: VID27 cytoplas 97.4 0.0026 5.7E-08 76.5 15.9 135 120-255 501-646 (794)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.1 2.2E-06 61.4 28.9 236 31-268 122-502 (527)
360 PF04841 Vps16_N: Vps16, N-ter 97.4 0.085 1.8E-06 60.1 27.3 229 8-261 72-319 (410)
361 PF08596 Lgl_C: Lethal giant l 97.4 0.032 6.9E-07 63.0 23.3 229 61-298 3-291 (395)
362 KOG1008 Uncharacterized conser 97.4 4.5E-05 9.8E-10 86.3 0.5 196 58-255 55-274 (783)
363 PF14583 Pectate_lyase22: Olig 97.4 0.24 5.2E-06 55.0 29.2 262 45-309 16-340 (386)
364 PF14583 Pectate_lyase22: Olig 97.3 0.21 4.5E-06 55.5 28.1 274 23-299 42-383 (386)
365 PF03178 CPSF_A: CPSF A subuni 97.3 0.045 9.7E-07 60.1 23.2 171 40-215 3-202 (321)
366 COG3386 Gluconolactonase [Carb 97.2 0.19 4E-06 54.9 26.0 214 65-284 30-272 (307)
367 KOG2395 Protein involved in va 97.1 0.015 3.2E-07 65.4 16.3 144 69-215 343-500 (644)
368 PF05096 Glu_cyclase_2: Glutam 97.1 0.35 7.5E-06 51.1 25.7 184 60-248 45-251 (264)
369 KOG4640 Anaphase-promoting com 97.1 0.0021 4.5E-08 73.4 9.8 94 59-153 20-115 (665)
370 PF03178 CPSF_A: CPSF A subuni 97.1 0.11 2.4E-06 57.1 23.2 177 29-211 42-261 (321)
371 KOG2395 Protein involved in va 97.0 0.008 1.7E-07 67.4 13.4 138 116-255 349-499 (644)
372 KOG4640 Anaphase-promoting com 97.0 0.0029 6.3E-08 72.2 9.7 94 101-195 20-115 (665)
373 COG3204 Uncharacterized protei 97.0 0.15 3.2E-06 54.1 21.3 193 56-249 82-305 (316)
374 PRK13616 lipoprotein LpqB; Pro 96.9 0.077 1.7E-06 63.1 21.6 170 80-256 328-525 (591)
375 TIGR03074 PQQ_membr_DH membran 96.9 0.21 4.5E-06 61.0 25.6 193 31-224 196-486 (764)
376 PRK13616 lipoprotein LpqB; Pro 96.9 0.064 1.4E-06 63.8 20.2 201 38-249 328-560 (591)
377 PF05096 Glu_cyclase_2: Glutam 96.8 0.95 2.1E-05 47.9 26.9 192 7-204 33-249 (264)
378 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.074 1.6E-06 48.5 14.6 101 19-126 2-109 (111)
379 PHA02713 hypothetical protein; 96.7 0.08 1.7E-06 62.8 19.4 219 82-308 273-544 (557)
380 KOG4441 Proteins containing BT 96.7 0.098 2.1E-06 62.1 19.8 229 68-301 282-550 (571)
381 PHA02713 hypothetical protein; 96.6 0.058 1.3E-06 64.0 17.5 186 28-220 303-538 (557)
382 COG3490 Uncharacterized protei 96.6 0.35 7.5E-06 51.0 20.6 201 103-303 69-316 (366)
383 smart00320 WD40 WD40 repeats. 96.6 0.0058 1.3E-07 42.1 5.6 39 49-87 2-40 (40)
384 PF14870 PSII_BNR: Photosynthe 96.6 1.5 3.3E-05 47.7 34.5 281 3-294 4-301 (302)
385 smart00320 WD40 WD40 repeats. 96.6 0.0074 1.6E-07 41.5 5.9 39 133-171 2-40 (40)
386 KOG4441 Proteins containing BT 96.5 0.13 2.9E-06 61.0 19.7 212 28-248 284-532 (571)
387 COG3490 Uncharacterized protei 96.5 0.78 1.7E-05 48.5 21.9 230 62-294 70-345 (366)
388 PRK13684 Ycf48-like protein; P 96.4 2.1 4.5E-05 47.4 31.9 278 5-295 35-329 (334)
389 KOG2444 WD40 repeat protein [G 96.4 0.0035 7.6E-08 63.7 4.6 141 73-216 32-178 (238)
390 PF05694 SBP56: 56kDa selenium 96.4 1 2.3E-05 50.6 24.0 219 28-246 86-392 (461)
391 PF15390 DUF4613: Domain of un 96.4 0.31 6.8E-06 56.0 20.0 150 102-259 20-187 (671)
392 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.3 6.4E-06 44.7 16.2 100 104-210 2-109 (111)
393 PRK10115 protease 2; Provision 96.3 4.1 8.8E-05 49.8 32.0 192 61-256 128-344 (686)
394 PRK10115 protease 2; Provision 96.3 4.1 9E-05 49.7 33.9 191 18-214 128-343 (686)
395 PF14870 PSII_BNR: Photosynthe 96.3 2.2 4.8E-05 46.4 26.9 224 18-250 63-298 (302)
396 KOG4499 Ca2+-binding protein R 96.3 0.5 1.1E-05 48.5 18.8 219 23-245 21-272 (310)
397 KOG2079 Vacuolar assembly/sort 96.1 0.069 1.5E-06 64.7 13.6 99 30-130 100-202 (1206)
398 PHA03098 kelch-like protein; P 96.0 0.21 4.6E-06 58.9 17.6 182 28-218 294-514 (534)
399 KOG1897 Damage-specific DNA bi 95.9 6.5 0.00014 48.1 33.2 282 15-300 529-901 (1096)
400 PRK13684 Ycf48-like protein; P 95.8 3.6 7.9E-05 45.5 25.3 148 101-253 172-328 (334)
401 TIGR03074 PQQ_membr_DH membran 95.8 1.8 4E-05 53.0 24.3 112 71-183 194-354 (764)
402 KOG4499 Ca2+-binding protein R 95.7 1.2 2.5E-05 45.9 18.3 134 59-195 108-263 (310)
403 KOG1897 Damage-specific DNA bi 95.6 8.4 0.00018 47.2 32.1 278 18-301 489-860 (1096)
404 PF10647 Gmad1: Lipoprotein Lp 95.5 3.1 6.6E-05 44.2 22.4 144 103-249 25-187 (253)
405 KOG1916 Nuclear protein, conta 95.5 0.0089 1.9E-07 70.6 3.2 174 13-220 129-328 (1283)
406 KOG2079 Vacuolar assembly/sort 95.4 0.034 7.3E-07 67.3 7.5 102 154-256 98-203 (1206)
407 KOG1916 Nuclear protein, conta 95.4 0.013 2.7E-07 69.3 3.9 173 55-261 128-328 (1283)
408 COG3204 Uncharacterized protei 95.3 2.4 5.1E-05 45.3 19.8 168 12-181 81-270 (316)
409 PF10647 Gmad1: Lipoprotein Lp 95.3 5 0.00011 42.6 23.4 144 61-207 25-187 (253)
410 PHA02790 Kelch-like protein; P 95.2 0.78 1.7E-05 53.5 18.1 181 28-218 271-473 (480)
411 PHA03098 kelch-like protein; P 95.2 0.51 1.1E-05 55.7 16.9 147 70-219 294-468 (534)
412 KOG2444 WD40 repeat protein [G 95.2 0.053 1.1E-06 55.3 7.1 104 29-132 70-178 (238)
413 TIGR02604 Piru_Ver_Nterm putat 95.0 7.7 0.00017 43.5 25.7 150 8-162 3-202 (367)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 95.0 8.4 0.00018 43.8 25.1 83 142-224 306-407 (415)
415 PF15390 DUF4613: Domain of un 94.9 0.86 1.9E-05 52.6 16.2 148 18-174 21-187 (671)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 9.9 0.00021 43.3 26.4 42 186-227 308-349 (415)
417 PF14727 PHTB1_N: PTHB1 N-term 94.6 10 0.00023 43.2 31.5 152 19-172 22-203 (418)
418 PLN00033 photosystem II stabil 94.6 11 0.00023 42.9 32.7 144 146-294 241-396 (398)
419 smart00036 CNH Domain found in 94.4 9.3 0.0002 41.7 28.6 227 30-265 14-279 (302)
420 PHA02790 Kelch-like protein; P 94.0 2.3 4.9E-05 49.6 18.0 183 113-300 272-473 (480)
421 PF05694 SBP56: 56kDa selenium 93.9 14 0.00031 41.8 26.3 188 70-257 86-343 (461)
422 TIGR02604 Piru_Ver_Nterm putat 93.6 2.5 5.4E-05 47.4 16.9 141 60-204 14-202 (367)
423 KOG3630 Nuclear pore complex, 93.6 0.48 1E-05 58.0 11.3 142 60-203 101-261 (1405)
424 COG5276 Uncharacterized conser 93.6 12 0.00026 40.0 30.3 271 16-296 86-368 (370)
425 KOG3630 Nuclear pore complex, 93.4 0.62 1.3E-05 57.1 11.9 179 64-244 46-260 (1405)
426 PF07995 GSDH: Glucose / Sorbo 93.4 15 0.00033 40.5 26.4 225 18-248 3-326 (331)
427 PF10168 Nup88: Nuclear pore c 93.3 3.5 7.7E-05 50.2 18.4 92 103-217 86-181 (717)
428 PF12234 Rav1p_C: RAVE protein 93.3 2.8 6E-05 49.9 16.9 109 145-254 31-154 (631)
429 COG5167 VID27 Protein involved 93.1 1.1 2.5E-05 50.5 12.4 138 116-256 483-632 (776)
430 COG1520 FOG: WD40-like repeat 93.1 18 0.00039 40.5 24.7 150 69-222 67-224 (370)
431 COG1520 FOG: WD40-like repeat 93.0 18 0.00039 40.4 30.0 192 31-225 70-278 (370)
432 PF12894 Apc4_WD40: Anaphase-p 92.9 0.33 7.2E-06 37.3 5.8 36 14-51 9-44 (47)
433 PF12894 Apc4_WD40: Anaphase-p 92.8 0.29 6.4E-06 37.6 5.4 34 185-219 11-44 (47)
434 KOG2280 Vacuolar assembly/sort 92.8 4.4 9.6E-05 48.2 17.2 194 40-239 65-271 (829)
435 COG5167 VID27 Protein involved 92.3 1.4 2.9E-05 50.0 11.7 144 68-215 476-632 (776)
436 PF12234 Rav1p_C: RAVE protein 92.2 4.7 0.0001 48.0 16.9 111 102-214 30-155 (631)
437 TIGR03547 muta_rot_YjhT mutatr 91.7 25 0.00053 38.9 23.4 95 28-122 17-128 (346)
438 PLN00033 photosystem II stabil 91.6 28 0.00062 39.5 26.4 140 104-250 241-393 (398)
439 PF03022 MRJP: Major royal jel 91.6 23 0.0005 38.4 24.4 163 82-245 35-253 (287)
440 COG3823 Glutamine cyclotransfe 90.9 12 0.00026 38.2 15.6 172 70-245 55-247 (262)
441 TIGR03548 mutarot_permut cycli 90.8 29 0.00062 38.0 21.8 105 70-176 72-197 (323)
442 COG3823 Glutamine cyclotransfe 90.8 10 0.00023 38.6 15.0 172 28-203 55-247 (262)
443 COG3292 Predicted periplasmic 90.7 19 0.00041 41.8 18.8 267 15-291 163-441 (671)
444 KOG2280 Vacuolar assembly/sort 90.3 11 0.00023 45.2 16.8 178 80-263 63-253 (829)
445 PF05935 Arylsulfotrans: Aryls 89.9 13 0.00028 43.4 17.6 151 73-228 117-314 (477)
446 PLN02193 nitrile-specifier pro 89.8 28 0.0006 40.5 20.4 188 28-219 175-414 (470)
447 PF14781 BBS2_N: Ciliary BBSom 89.6 12 0.00027 35.5 13.7 114 64-181 3-133 (136)
448 KOG2063 Vacuolar assembly/sort 89.6 17 0.00038 44.9 18.7 250 28-286 25-297 (877)
449 PLN02153 epithiospecifier prot 89.6 37 0.0008 37.5 24.0 186 28-218 32-287 (341)
450 PF03022 MRJP: Major royal jel 89.3 35 0.00077 36.9 21.1 163 40-203 35-253 (287)
451 COG5290 IkappaB kinase complex 88.8 13 0.00028 44.6 15.8 91 147-239 250-348 (1243)
452 COG4590 ABC-type uncharacteriz 88.7 0.79 1.7E-05 51.1 6.0 175 94-270 213-400 (733)
453 PF14727 PHTB1_N: PTHB1 N-term 88.7 50 0.0011 37.8 26.9 142 70-214 36-203 (418)
454 KOG1983 Tomosyn and related SN 88.3 12 0.00027 47.4 16.9 233 60-304 36-271 (993)
455 PF05935 Arylsulfotrans: Aryls 88.3 17 0.00038 42.3 17.2 144 37-185 126-313 (477)
456 PF13449 Phytase-like: Esteras 88.3 29 0.00062 38.3 18.2 143 101-244 19-231 (326)
457 PRK14131 N-acetylneuraminic ac 88.1 50 0.0011 37.1 20.9 95 28-122 38-149 (376)
458 TIGR03118 PEPCTERM_chp_1 conse 87.3 48 0.001 36.0 23.9 218 18-237 24-307 (336)
459 PF08801 Nucleoporin_N: Nup133 87.2 34 0.00074 39.0 18.6 32 185-216 189-220 (422)
460 KOG2247 WD40 repeat-containing 87.0 0.082 1.8E-06 59.2 -2.8 144 63-210 38-183 (615)
461 PF13449 Phytase-like: Esteras 86.9 54 0.0012 36.1 24.0 143 60-203 20-232 (326)
462 PRK14131 N-acetylneuraminic ac 86.8 59 0.0013 36.5 22.0 53 112-164 84-149 (376)
463 TIGR03547 muta_rot_YjhT mutatr 86.3 58 0.0013 35.9 23.4 53 112-164 63-128 (346)
464 PF14761 HPS3_N: Hermansky-Pud 86.2 44 0.00094 34.4 16.9 138 114-255 29-213 (215)
465 PF10395 Utp8: Utp8 family; I 86.2 85 0.0019 37.8 24.1 237 23-264 34-313 (670)
466 PF08728 CRT10: CRT10; InterP 86.1 17 0.00036 44.0 15.3 142 29-172 49-245 (717)
467 PF14781 BBS2_N: Ciliary BBSom 85.9 28 0.00061 33.1 13.7 113 107-223 4-133 (136)
468 KOG1983 Tomosyn and related SN 85.9 9.9 0.00022 48.2 14.2 55 160-219 214-268 (993)
469 PF10313 DUF2415: Uncharacteri 85.7 2.8 6E-05 31.6 5.6 32 17-48 1-34 (43)
470 TIGR03548 mutarot_permut cycli 85.1 39 0.00085 36.9 17.1 106 28-135 72-198 (323)
471 KOG2247 WD40 repeat-containing 85.1 0.11 2.4E-06 58.2 -3.0 142 104-248 37-180 (615)
472 KOG1900 Nuclear pore complex, 84.9 12 0.00026 47.3 13.7 138 36-174 96-273 (1311)
473 PF07569 Hira: TUP1-like enhan 84.7 7.1 0.00015 40.5 10.3 64 193-256 18-95 (219)
474 PLN02153 epithiospecifier prot 84.5 69 0.0015 35.3 20.5 134 82-220 51-230 (341)
475 COG5276 Uncharacterized conser 84.3 65 0.0014 34.7 26.4 151 60-219 87-245 (370)
476 PF14761 HPS3_N: Hermansky-Pud 84.1 21 0.00045 36.7 12.9 101 156-257 29-164 (215)
477 PF08728 CRT10: CRT10; InterP 84.1 7.2 0.00016 47.0 11.1 112 19-131 103-246 (717)
478 PF10433 MMS1_N: Mono-function 84.0 94 0.002 36.4 28.2 230 68-303 219-482 (504)
479 COG1506 DAP2 Dipeptidyl aminop 83.7 1.1E+02 0.0024 36.9 26.3 285 11-302 54-389 (620)
480 KOG1898 Splicing factor 3b, su 83.1 1.4E+02 0.003 37.6 29.5 74 13-86 579-668 (1205)
481 PF10433 MMS1_N: Mono-function 82.9 1E+02 0.0022 36.0 27.6 226 27-260 220-480 (504)
482 PRK05560 DNA gyrase subunit A; 82.2 1.4E+02 0.0031 37.2 26.6 207 28-239 547-793 (805)
483 PF10313 DUF2415: Uncharacteri 81.7 5.4 0.00012 30.1 5.7 31 186-216 1-34 (43)
484 PF07569 Hira: TUP1-like enhan 81.4 8.5 0.00018 39.9 9.3 65 109-174 18-96 (219)
485 PF07995 GSDH: Glucose / Sorbo 81.3 92 0.002 34.4 26.8 101 62-164 4-134 (331)
486 PF02333 Phytase: Phytase; In 81.0 1E+02 0.0022 34.7 23.4 189 29-222 68-298 (381)
487 PF10168 Nup88: Nuclear pore c 80.8 57 0.0012 40.0 17.3 28 186-214 85-112 (717)
488 KOG2377 Uncharacterized conser 80.3 28 0.00061 39.4 13.0 136 38-175 42-187 (657)
489 PF12768 Rax2: Cortical protei 79.2 29 0.00064 37.4 12.7 114 122-236 15-145 (281)
490 KOG1900 Nuclear pore complex, 78.7 24 0.00053 44.8 13.2 152 63-216 82-273 (1311)
491 COG5290 IkappaB kinase complex 77.3 79 0.0017 38.3 16.0 70 189-259 250-327 (1243)
492 KOG4460 Nuclear pore complex, 77.1 41 0.0009 38.8 13.3 99 103-223 105-206 (741)
493 TIGR01063 gyrA DNA gyrase, A s 76.2 2.1E+02 0.0046 35.7 26.7 206 28-238 545-789 (800)
494 PF07250 Glyoxal_oxid_N: Glyox 76.0 25 0.00054 37.1 10.8 141 83-226 48-208 (243)
495 PF02333 Phytase: Phytase; In 75.5 1.5E+02 0.0032 33.5 22.7 184 69-257 66-291 (381)
496 PF10214 Rrn6: RNA polymerase 75.3 2.2E+02 0.0048 35.4 26.5 156 100-257 78-277 (765)
497 KOG1898 Splicing factor 3b, su 75.0 2.1E+02 0.0045 36.1 19.1 170 41-215 855-1048(1205)
498 KOG2377 Uncharacterized conser 74.5 43 0.00093 38.0 12.4 125 119-245 39-171 (657)
499 PF08801 Nucleoporin_N: Nup133 74.2 1.6E+02 0.0035 33.5 18.0 30 228-257 190-220 (422)
500 COG4257 Vgb Streptogramin lyas 74.1 1.3E+02 0.0028 32.3 21.9 244 60-308 62-316 (353)
No 1
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-85 Score=720.96 Aligned_cols=767 Identities=47% Similarity=0.668 Sum_probs=579.1
Q ss_pred CCcccceeE-----EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE
Q 003556 1 MTTKRAYKL-----QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA 75 (811)
Q Consensus 1 ms~kr~~ki-----~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~La 75 (811)
|.+++.+++ +++.+|...|.|+.. ....+.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++.+.+|+
T Consensus 8 m~~~~~t~Lr~~~~~~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTREFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred ceeeeeeccccccchhhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence 678888888 699999999999999 45889999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003556 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (811)
Q Consensus 76 sgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg 155 (811)
+|+.+|+|++||++.++.++++.+|...+..+.|+|.+.|++.|+.|+.+++||++...|.+.+++|...+.+++|+|+|
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003556 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~f 235 (811)
+|++.|++|..++|||+..|+.+.+|..|.+.+..+.|||...+++.|+.|++|+|||+++++.+....+...+|.+++|
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAF 246 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEECCCEE------------EEEecCCceeeeeeccccceeEeeecCCCEEE--EEECCCeEEEEEecCCCc
Q 003556 236 NPDGRTLLCGLHESLK------------VFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLG--CSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 236 spdg~~Lasgs~d~I~------------Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLa--sg~~Dg~V~IWdvd~~~~ 301 (811)
+|+|..+++|....+. ++.|++..+...+...+.....+......+.. .+..+..-++.+..-
T Consensus 247 n~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~kl~~~~~--- 323 (825)
T KOG0267|consen 247 NPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLSKLEDSTY--- 323 (825)
T ss_pred cCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCccccccccccccccccccccc---
Confidence 9999999999777655 44455544444444444333222221111110 111110001100000
Q ss_pred eeeeeccceeeccccccccCCCCCccccccCccccccCCcccc-CCCccccccccccCcccccCCCCccccccccccccc
Q 003556 302 EPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVS-QNSDPLVKETKSLGRLSVSQNSDPLLKETKTLGRLS 380 (811)
Q Consensus 302 ~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (811)
.++. ..-..+++++++ +..++..+.++.-++-+.+++++....+.+..+...
T Consensus 324 ------------------------~p~l---~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~~~~~s~P~~r~~ 376 (825)
T KOG0267|consen 324 ------------------------VPLL---KETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDRSEVESKPLTRES 376 (825)
T ss_pred ------------------------ccee---ccccchhccccccccCCCcccCCCCcccccccccccccccccCcccccc
Confidence 0000 001122333332 333333333333333445555554444444443333
Q ss_pred ccCCCCccccccccccCCCCCCCCcccccCCCCCc-ccccc---ccccccccccccccCCCcCcccCCCCccccccCCCC
Q 003556 381 VSQNSEPAKESKVLSSTGSVPGTPQRVNLNMGSKT-SVVNS---TAVVSKRTSTRANTASNVPILNKSDIVPVIVPRTNT 456 (811)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~ 456 (811)
.....++.+...-+.+.+.++..|.|....+.++. +++.+ .++.++....+++++.+.. ....+..||+.+ ..+
T Consensus 377 s~~~~di~~~s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka~~~-~~e~~~~~v~~~-~~p 454 (825)
T KOG0267|consen 377 SNLSPDIPKESRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKAEIA-SVEQDNNPVIQD-PLP 454 (825)
T ss_pred CCCCcccccccccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCcccccc-ccccccccccCC-Ccc
Confidence 32233333344555566677888888877665555 55543 4455555555555555432 235566788776 555
Q ss_pred ccccccccccccccccccCCCCcCCcccccccccCCCCCCCCcccccccccCCCCccccccccccc--cccccccccccc
Q 003556 457 RFEQAVESRKDIDVIGRTMPFSLQSKATDSRKFQNSGDEVDQPAVSVLCENTGSKATEVSSVADRN--TFAAIKGSIQGV 534 (811)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 534 (811)
..+.+.......+...|++|.+.++...+.| ++.++++..++... ...+.+....+.-...++ +++....+.+.
T Consensus 455 ~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~st~-~~rtssspvmpv~lp~~s~~ty~~~~v~a~~- 530 (825)
T KOG0267|consen 455 TIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPTSTV-PERTSSSPVMPVILPQASMSTYPEPPVGASS- 530 (825)
T ss_pred cccccccCccccccccccCCccccccccccc--ccCCCCCCCccccc-ccccccCCccccccCCCcccccCCCCccccC-
Confidence 5556666666667677889999998877887 67777776555433 344555566665555555 77777766543
Q ss_pred ceeccCCcccceeeccCCCCCcCCCCCCCcccccccccCCCCCCCCCccccccCCccccccccccccCCCCCCCCCCccc
Q 003556 535 SVTERNSKEDIFTVSGKSGTMSMSESPASYEDERYDSLGHKSNRDGYAMESQKRGRMHSLVINWEKRGSSPNYDGPTSSI 614 (811)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (811)
.++.......+-.|++++..+.++.+......++.+..--.+. +..-.+..++--+..++.++.....+...|+..+
T Consensus 531 -~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~~pa~~~~t--k~~~~~~~t~~~s~iasr~r~s~t~~~~tPa~~~ 607 (825)
T KOG0267|consen 531 -TARTSSARILPVTFNQANNISSEEAPVTLRRQRRNSPARVMPT--KLNQSVNMTSDTSHIASRHRVSPTQMLATPAVID 607 (825)
T ss_pred -cccccccccccccccccccccCcCCccccccccCCCccccccc--ccchhhcccccccchhhhhccCccccccccceec
Confidence 2333333344555666666666666655544333311111100 0000112233344555556555555666666665
Q ss_pred CC--------CCcccccccCCCCcccccCCCCChHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhcCCHHHHHHHHHh
Q 003556 615 SS--------GTVSTFKQRGYSSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQK 686 (811)
Q Consensus 615 ~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~h~~~~~~l~~R~~~l~~~~~~w~~~~~~~~i~~~~~ 686 (811)
.+ .+.++.++++.... |+.....+|+|+.++||..|++|+..|++|+++||+||+||+++|||++|.+++|
T Consensus 608 ~~~~mt~~et~~t~~~~q~~n~~~-ee~~~s~~eedI~e~im~~Hde~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~k 686 (825)
T KOG0267|consen 608 QVGDMTADETRPTNMQPQRDNLVQ-EEPIISDREEDIVEDIMGTHNEFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRK 686 (825)
T ss_pred cccccccccccccccccccccccc-cccccCcchhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 55 23456677776666 6666668899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeehHHHhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHHhHhHHhhhcCCCcccccchHH
Q 003556 687 MADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAE 766 (811)
Q Consensus 687 ~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~~~~~gvd~~~E 766 (811)
|.|++|.||+|+||++|.++|+||+|++|||++..||.||||+|+.|+|+||++||+.||++|+++++||+.|||||+||
T Consensus 687 l~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~VGVDi~ae 766 (825)
T KOG0267|consen 687 LADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSVGVDIHAE 766 (825)
T ss_pred hhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCcccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhcCcchhhHHHHHHhhcc
Q 003556 767 QRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLALQ 808 (811)
Q Consensus 767 eR~~~c~~c~~~l~~i~~~~~~~~~~~g~~~~~~~el~~~~~ 808 (811)
||.++|..||.+|.+|...++.+.+.+|..++..++++....
T Consensus 767 er~~~~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~~ 808 (825)
T KOG0267|consen 767 ERKERYSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKGS 808 (825)
T ss_pred HHHhhhhhhhhhcchhhccccccccccccchhhhhhhccccc
Confidence 999999999999999999999999999999999999987653
No 2
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=100.00 E-value=5.6e-48 Score=378.76 Aligned_cols=161 Identities=45% Similarity=0.747 Sum_probs=158.5
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHhhcCCHHHHHHHHHhcCCceEEeehHHHhh--cccceeeehhhhhhhhhHHhhhcc
Q 003556 648 MEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVMSIVV--EKIEIVTLDICSCLLPLLTGLLES 725 (811)
Q Consensus 648 ~~~h~~~~~~l~~R~~~l~~~~~~w~~~~~~~~i~~~~~~~d~~v~~d~l~~~~--~~~~~~~l~~c~~~lp~~~~ll~s 725 (811)
|++|++|+++|++|+++|++||++|+++|+|+||+|+++|+|+||+||+|++|+ ++++.||||+|+.+||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHhHhHHhhhcC-CCcccccchHHHHHHHHHHHHHHHHHHHhhccchhhcCcchhhHHHHHH
Q 003556 726 DMDRHLSISLDILLKLVRTFGSMIYSAISA-STSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELN 804 (811)
Q Consensus 726 ~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~-~~~~gvd~~~EeR~~~c~~c~~~l~~i~~~~~~~~~~~g~~~~~~~el~ 804 (811)
|||+|+.+||++|++|+++|||+|++++++ ++.+||||++|||++||+.||++|++|++.++.|++++|++|+.||||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999996 5889999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 003556 805 LALQ 808 (811)
Q Consensus 805 ~~~~ 808 (811)
++||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-40 Score=342.55 Aligned_cols=298 Identities=24% Similarity=0.439 Sum_probs=271.3
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (811)
-..+.||.++|.|++|+| ++..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||+|++||.
T Consensus 108 ssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred ccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 356889999999999999 7788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeE-EEEEcCCCCCeEEEEEeC-----CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003556 89 EEAKI-VRTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 89 ~t~~~-v~~l~~h~~~I~sl~fsp-----dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs 162 (811)
.+|++ .+.+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|++|-.+| +|++|+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC
Confidence 98875 467899999999999987 45689999999999999999999999999999999999998654 899999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEe-----------CCCC-------------------------EEEEEECC
Q 003556 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFH-----------PHEF-------------------------LLATGSAD 206 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fs-----------pdg~-------------------------~Lasgs~D 206 (811)
.|++|++|+...|.+..++++|...|+.++++ |.++ .|++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 3333 49999999
Q ss_pred CeEEEEECCC-CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEE
Q 003556 207 RTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLG 283 (811)
Q Consensus 207 g~I~IwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLa 283 (811)
.++.+|+-.. .+++....+|..-|+.+.|+||++++++++-| ++++|+-.+++.+..+..+-..++.+.+ .|.++|+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE
Confidence 9999999754 45888899999999999999999999998776 7999999999999999888888888777 6789999
Q ss_pred EEECCCeEEEEEecCCCceeeeecc
Q 003556 284 CSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 284 sg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
+|+.|.++++|++.+.++..-..++
T Consensus 426 S~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred EcCCCceEEEEEeeeeeecccCCCC
Confidence 9999999999999999887544433
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=341.36 Aligned_cols=281 Identities=27% Similarity=0.528 Sum_probs=268.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEEA 91 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t~ 91 (811)
+-+.+|..+.|++ ++..|+||+-+|.++||+..+...+..+.+|+..|.++.|+|. +..+++|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 5668999999999 6788999999999999999999999999999999999999997 568999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
..+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|++||..+++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEec-CCCEEEEEECC-C
Q 003556 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-S 249 (811)
Q Consensus 172 l~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp-dg~~Lasgs~d-~ 249 (811)
+++|.++..+.+|..+|.+|.|+|+|..||+|+.|++++|||++....+..+.+|..-|+.+.|+| .|.+|++++.| .
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 68888888766 6
Q ss_pred EEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEE
Q 003556 250 LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
++||.-....+...+..+...+.++.+ ++++++++++.|.++++|.
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999988888877 7899999999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-38 Score=325.76 Aligned_cols=288 Identities=23% Similarity=0.425 Sum_probs=262.1
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceE-EEecCCCCCeEEEEEcC-----CCCEEEEEEC
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVSFDS-----SEVLVAAGAA 79 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~ 79 (811)
..++.+.++|...|.|++|+| ++..||+|+.||.|++||..+++++ ..+.+|...|++++|.| ..++|++++.
T Consensus 147 eTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence 356788999999999999999 6778999999999999999888765 57899999999999965 6779999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc-------
Q 003556 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT------- 152 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fs------- 152 (811)
||.|+|||+..+.++..+.+|..+|+|+.|--+ .+|++|+.|++|++|+...|.+...+++|...|+.++.+
T Consensus 226 Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999999999999999999999999999843 489999999999999999999999999999999999876
Q ss_pred ----CCCC-------------------------EEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003556 153 ----PDGR-------------------------WVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 153 ----pdg~-------------------------~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Las 202 (811)
|.++ .|++|++|.++.+|+.... +++..+.+|..-|+.+.|+||++++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 2233 4999999999999997654 477888899999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCC
Q 003556 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK 280 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~ 280 (811)
++.|..|++||.++|+.+..+++|-+.|+.++|+.|.++|++|+.| +++||++.+.+...-+..+...++.+.+ +||+
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999888 6999999998887777777777777766 8999
Q ss_pred EEEEEECCCeEEEEE
Q 003556 281 LLGCSYNQSCVGVWV 295 (811)
Q Consensus 281 lLasg~~Dg~V~IWd 295 (811)
.+++|+.|..+++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999994
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=305.41 Aligned_cols=284 Identities=25% Similarity=0.444 Sum_probs=265.7
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
+.+++|.+.|.++.|++ +.+.+++++.||.+.|||.-+....+.+.-....|..++|+|.|+++|+|+-|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 68999999999999999 77889999999999999999999999999889999999999999999999999999999998
Q ss_pred CC------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003556 90 EA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (811)
Q Consensus 90 t~------~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs 162 (811)
+. +..+.+.+|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 46678999999999999997 56899999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEecCCC
Q 003556 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR 240 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~--~~~I~sl~fspdg~ 240 (811)
.|+..++||++.+.+.+.|.+|+..|+++.|+|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||..|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 9999999999999999999999999999999999999999999999999999998888777543 56899999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEE
Q 003556 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
+|++|.++ ++.|||.-..+....+..+..++.++.. +||..+++|+.|.+++||.
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99998776 6999998888888888899999999877 8999999999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=301.50 Aligned_cols=290 Identities=26% Similarity=0.427 Sum_probs=259.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEEC-----CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-----GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl-----~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (811)
....-++.+|.+.|+.++..+.+..++++++.|.++.+|++ ..|..++.+.||...|..+..+++|++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 34556899999999999999988899999999999999987 3467789999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--CC
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPD--GR 156 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h--~~~I~si~fspd--g~ 156 (811)
+++++||+.+++..+.|.+|...|.+++|+++...+++|+.|.+|++|++-. .+..++..+ .+.|.|++|+|+ ..
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999864 455555544 688999999997 67
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
+|++++.|++|++||+++.+....+.+|.+.++.+.++|||.+.++|+.||.+.+||++.++.+..+. +...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999987765 45789999999
Q ss_pred cCCCEEEEEECCCEEEEEecCCceeeeeecccc-------c---eeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 237 PDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------R---LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 237 pdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~-------~---i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
|+.-+|+.+.+.+|+||++++..+...+..... . +....+.+|+.|.+|+.|+.|++|.+.
T Consensus 243 pnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 243 PNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999888999999999888765533221 1 222334799999999999999999875
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=325.40 Aligned_cols=248 Identities=28% Similarity=0.537 Sum_probs=239.4
Q ss_pred eeEEEEecCCCCEEEEEEeeC-CCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~-~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
..+++|.+|.+.|.++.|+|. ++.-+|+|+.||++++|++.+...+..+.+|...|..++|+|+|++|++++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 567899999999999999997 4668999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
||++++..+....||...|.+++|++||..+++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.|+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEE
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (811)
+++|||++....+..+.+|..-|+.++|.| .|.+|++++.|++++||..+++.++..+.+|.+.|.++.+++|++++++
T Consensus 368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 999999999999999999999999999999 6899999999999999999999999999999999999999999999998
Q ss_pred EECC-CEEEEE
Q 003556 245 GLHE-SLKVFS 254 (811)
Q Consensus 245 gs~d-~I~Vwd 254 (811)
++.| ++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 8766 799984
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.1e-33 Score=289.09 Aligned_cols=286 Identities=32% Similarity=0.632 Sum_probs=261.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (811)
++.+.+|.++|++++|+| ++.+|++++.||.|++|++.+++....+..|...+..+.|.++++++++++.+|.|++||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 356779999999999999 5778999999999999999988888889999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (811)
Q Consensus 89 ~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~ 168 (811)
.+++.+..+..|...+.++.|++++.++++++.+|.|++||+++++....+..|...+.+++|+|++.++++++.+|.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888999999999999999988898888899999999999999999998999999999999999888888899999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE-C
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-H 247 (811)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~ 247 (811)
+||+++++.+..+..|...+.++.|+|++..+++++.|+.|++||++.++.+..+..+...+.++.|++++.+++++. +
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999999999999988888999999999999999999999999999999999888888888999999999999998888 6
Q ss_pred CCEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEE
Q 003556 248 ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 248 d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
+.+++|++...+....+..+...+..+.+ +++++|++++.|+.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 68999999987777776666666777776 4679999999999999995
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=297.00 Aligned_cols=287 Identities=26% Similarity=0.498 Sum_probs=270.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
..+.+.+|..+|+.+-|+| ...+++++++|++|++||..+++....++||+..|.+|.|+..|+++++++.|-.+++||
T Consensus 100 l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred chhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 3456778999999999999 778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 88 LEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 88 l~t-~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
..+ .++++.+.+|...|.+++|-|.|++|++++.|.+|+.|++.++-++.++.+|...|..++.+.||..+++++.|.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 987 5678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCC---------------CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCee
Q 003556 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPH---------------EFLLATGSADRTVKFWDLETFELIGSAGPETSGVR 231 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~V~sv~fspd---------------g~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~ 231 (811)
|++|-+.++.+...+..|+.+|-|++|.|. +.++.+++.|++|++||+.++.++.++.+|...|+
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999999999999999999999999999872 25899999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCC-CEEEEEECCCeEEEEE
Q 003556 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWV 295 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg-~lLasg~~Dg~V~IWd 295 (811)
.++|+|.|+||+++.+| ++++||+...+|+..+..+...+..+.+|.. .++++|+-|..+++|.
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999998887 6999999999999999988888888888754 5889999999999996
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=291.07 Aligned_cols=286 Identities=25% Similarity=0.479 Sum_probs=258.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
.-+.+|.+.|.|+++.| +..+|++|+.|++|+|||+.+++...++.||-..|..+++++-..|+++++.|+.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 35789999999999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
..+.++.+.||-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-
Q 003556 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (811)
||++.|+....+..|...+.+++.+|....+|+++.|. |+-|++..+..+..+.+|..-|++++...|| ++++|+++
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG 381 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce
Confidence 99999999999999999999999999999999999885 9999999999999999999999999999887 55666666
Q ss_pred CEEEEEecCCceeeeeecc---c-----cceeEeee-cCCCEEEEEECCCeEEEEEecC
Q 003556 249 SLKVFSWEPIRCHDAVDVG---W-----SRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~---~-----~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.+.+|||+.+.+++..... . ..+....+ ..|..|++|..|.+|.+|.-|-
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 5999999998776544111 1 11222223 4678899999999999996553
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.9e-33 Score=312.20 Aligned_cols=256 Identities=25% Similarity=0.515 Sum_probs=238.0
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-------------------------------ceEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------------------------------NAIL 53 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-------------------------------~~~~ 53 (811)
..+.+.++......++|+.|++ +..+||.|-.|..|++|.+... ....
T Consensus 367 pSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3567788888888999999998 5669999999999999987521 1234
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 003556 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (811)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~ 133 (811)
.+.||.++|..+.|+|+.++|++++.|+++++|.+.+...+..++||..+|+++.|+|.|-|||+++.|++-++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003556 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (811)
Q Consensus 134 ~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 213 (811)
.+.+.+.+|-+.|.|+.|+|+..|+++|+.|.++++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCcee
Q 003556 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (811)
Q Consensus 214 l~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (811)
+.+++++..+.+|.+.|.++.|+.||..|++|+.| ++++||+......
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999988766 7999998765443
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-32 Score=287.09 Aligned_cols=277 Identities=26% Similarity=0.456 Sum_probs=254.1
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (811)
..|++++|+. +|.+||+|..||.+++|+. ++..+.++..|.++|.++.|+.+|.||++++.||++.+||..++...+.
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 5799999998 7889999999999999996 5888889999999999999999999999999999999999999999999
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (811)
Q Consensus 97 l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (811)
+.-|..+-..+.|.. ...|++++.||.|+++.+....++.++.+|.+.|.++.|.|.|..|+++++|++++||......
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 998988878899984 5579999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEeCCC---------CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 177 LLHDFKCHEGQIQCIDFHPHE---------FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 177 ~i~~~~~h~~~V~sv~fspdg---------~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
....+..|...|..+.|+|.| ..+++++.|++|++||+..+.+++.+..|..+|.+++|+|+|+|+++|+-
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 999999999999999999964 47999999999999999999999999999999999999999999999987
Q ss_pred C-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEec
Q 003556 248 E-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
+ .+.+|+....+.++....... +..+.+ .+|..|+++..|+.+++-|+.
T Consensus 473 dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccchheeEeecCCCe-EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 7 599999999888777655444 455555 688999999999999998864
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-32 Score=271.61 Aligned_cols=249 Identities=26% Similarity=0.484 Sum_probs=219.7
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
....++.|.||+-.|..++.++ +++++++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred cCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 3456789999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcC-CCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003556 85 LWDLEEAKIVRTLTG-HRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 85 IWDl~t~~~v~~l~~-h~~~I~sl~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sg 161 (811)
+|+............ +.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+.++|||..+++|
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 999875544333332 3789999999998 5699999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC---------CCCeeE
Q 003556 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE---------TSGVRC 232 (811)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~---------~~~I~s 232 (811)
+.||.+.+||++.++.+..+. +...|.+++|+|+..+|+.+... .|+|||+.++..+..+... .....+
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 999999999999999988776 78899999999999888877654 4999999998877665432 122466
Q ss_pred EEEecCCCEEEEEECC-CEEEEEec
Q 003556 233 LTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
++|++||..|++|..+ .|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999999999665 69999764
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.9e-32 Score=266.15 Aligned_cols=279 Identities=20% Similarity=0.370 Sum_probs=242.8
Q ss_pred CCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeE
Q 003556 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCI 105 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~I~ 105 (811)
..-+|++++.|.+|++|...+|.+..+++...+.|+.+.+.|++++|++++ ...|++||+.+++ ++.++.+|...|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence 346899999999999999999999999997788999999999999999887 6789999998765 6899999999999
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-C
Q 003556 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-H 184 (811)
Q Consensus 106 sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h 184 (811)
++.|..+|+.+++|+.||+++|||++...+-+.++ |..+|+++..+|+...|++|..+|.|++||+.+..+..++-. .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999999977777676 789999999999999999999999999999998877766653 4
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecC
Q 003556 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (811)
Q Consensus 185 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (811)
...|.++...|+|.+|+.+...|.+++|++-. .+++..++.|.+.+..+.+|||+++|++++.+ .++||+.+.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 46799999999999999999999999999865 34677789999999999999999999988766 799999998
Q ss_pred C-ceeeeeecccccee-EeeecCCCEEEEEECCCeEEEEEecCCCceeeeecc
Q 003556 258 I-RCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 258 ~-~~~~~~~~~~~~i~-~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
. +....+..+..-+. +.+..||.+|++|+.|+.+++|++..++...-+.++
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 7 44445555533333 445589999999999999999999998865544433
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=302.70 Aligned_cols=286 Identities=28% Similarity=0.585 Sum_probs=252.1
Q ss_pred EEecC-CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 11 EFVAH-SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 11 ~~~~H-~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..| ...|.|+.|++ +++++++++.|+.+++|+....+ ....+.+|...|.+++|+|++.++++++.|++|++||
T Consensus 153 ~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34344 78999999999 56679999999999999997777 7777889999999999999999999999999999999
Q ss_pred C-CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 88 L-EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 88 l-~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|++++|+++|++|++++.|+.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCe--EEEEEecCCCC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC---eeEEEEecCC
Q 003556 167 VKLWDLTAGK--LLHDFKCHEGQ--IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---VRCLTFNPDG 239 (811)
Q Consensus 167 I~IwDl~t~~--~i~~~~~h~~~--V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~---I~sl~fspdg 239 (811)
|++||+.++. +...+..+... +++++|+|++.+|++++.|+.+++||+..+..+..+.+|... +.+..+++.|
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999998 56777765555 999999999999999999999999999999999998888664 4444567899
Q ss_pred CEEEEEECC-CEEEEEecCCceeeeeecc-ccceeEeeec-CCCEEEEEE--CCCeEEEEEec
Q 003556 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLNVH-EGKLLGCSY--NQSCVGVWVVD 297 (811)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~~~i~~l~~~-dg~lLasg~--~Dg~V~IWdvd 297 (811)
.++++|+.+ .+.+|+..+......+..+ ...+..+.++ ...++++++ .|+.+++|..+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999888 5999999987766666666 5566666664 456777766 68999999765
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-32 Score=305.49 Aligned_cols=210 Identities=31% Similarity=0.617 Sum_probs=203.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
.....++.+|+++|..+.|+| +.++|+++++|++|++|.+.+..++..++||..+|+++.|+|.|-|+|+++.|++.++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 344567999999999999999 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
|.....++.+.+.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
.|.+||+.++..+..+.+|.+.|+++.|+.+|..||+|+.|++|++||+..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999864
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=265.87 Aligned_cols=246 Identities=28% Similarity=0.518 Sum_probs=228.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (811)
.|.+.+.--...|-.++|+| +++++|+|+-|....||++.+. .....+.+|++.+.|+.|-+|+ .|++++.|
T Consensus 88 nK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD 165 (343)
T KOG0286|consen 88 NKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGD 165 (343)
T ss_pred cceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCC
Confidence 46667777788999999999 8899999999999999999754 3456789999999999998855 67799999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
.+..+||+++++.+..|.+|.+.|.++++.| +++.|++|+-|+..++||++.+.++++|.+|...|.+++|.|+|.-|+
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeee
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEec
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (811)
+|++|+++++||++..+.+..|.. ...+|++++|+..|++|++|..|.++.+||.-+++.+..+.+|...|.++..+|
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 999999999999999998888873 346799999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECC-CEEEEE
Q 003556 238 DGRTLLCGLHE-SLKVFS 254 (811)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd 254 (811)
||..+++|+.| .++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 99999999988 599984
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=290.66 Aligned_cols=288 Identities=20% Similarity=0.385 Sum_probs=253.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
..+..+.+|...|+++.|.|..+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|+.+|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 356789999999999999998899999999999999999954 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
||+++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.++|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999987 45678999999999 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---EEEeCCC--CCCeeEEEEecC
Q 003556 165 NTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSAGPE--TSGVRCLTFNPD 238 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~---l~~~~~~--~~~I~sl~fspd 238 (811)
+.++||+.+.+-.+..... +.....++..+|++.++++-+.|+.|.+|.+...-. ...+.+| .+.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 9999999998766554432 334467899999999999999999999999754322 2235555 345677899999
Q ss_pred CCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecC--CCEEEEEECCCeEEEEE
Q 003556 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~d--g~lLasg~~Dg~V~IWd 295 (811)
|.+|++|..+ .+.+|||.+.+....+..+...+..+.+|. ...+|+|+.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999766 599999999998888888877777777754 46889999999999996
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-29 Score=254.93 Aligned_cols=286 Identities=21% Similarity=0.360 Sum_probs=238.0
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---ceEEEe-cCCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSL-SGHTSGIDSVSFDSSEVLVAAGAASG 81 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~DG 81 (811)
...++.+.+|.+.|+.++|+|..+.+||+|+.|..|++|+...+ .+...+ .+|+..|..++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 56788999999999999999943889999999999999998743 333333 37999999999999999999999999
Q ss_pred eEEEEECCCC--eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---CeEEEEEecCCCCeEEEEEcCCCC
Q 003556 82 TIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 82 ~I~IWDl~t~--~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~---~~~i~~~~~h~~~I~si~fspdg~ 156 (811)
++.||.-..+ +++.++.||...|.|++|+++|.|||+++.|..|.||.+.. ..++..++.|...|..+.|+|...
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9999987644 68899999999999999999999999999999999999874 357888999999999999999999
Q ss_pred EEEEEECCCeEEEEECC---CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003556 157 WVVSGGEDNTVKLWDLT---AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~---t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl 233 (811)
.|++++.|.+|++|+-. ...+..++.+|...|++++|++.|..|++++.|++|+||-.... ....|...++.+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV 239 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence 99999999999999866 34689999999999999999999999999999999999986521 123456789999
Q ss_pred EEecCCCEEEEE-ECCCEEEEEecCCce---e----eeeeccccceeEeeecC--CCEEEEEECCCeEEEEEec
Q 003556 234 TFNPDGRTLLCG-LHESLKVFSWEPIRC---H----DAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 234 ~fspdg~~Lasg-s~d~I~Vwd~~~~~~---~----~~~~~~~~~i~~l~~~d--g~lLasg~~Dg~V~IWdvd 297 (811)
.|. +| .|+++ .++.|++|.-...-. . ..-..+...+..+.+.. ..+|++|+.||.|++|.+.
T Consensus 240 ~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 998 54 56655 455799987653211 1 11123334556666644 6899999999999999875
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=4.6e-32 Score=284.26 Aligned_cols=279 Identities=24% Similarity=0.405 Sum_probs=243.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (811)
-...|..+.|.| +|+.|++|+..|.+.+|+......-..++.|.++|.++.|+.++.++++|+.+|.|++|+......
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 345899999999 677899999999999999765555556778999999999999999999999999999999765443
Q ss_pred EEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 95 RTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 95 ~~l~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~ 173 (811)
+.+.. |...|.+++|+|....|++++.||+|+|||....+.-..+.+|...|.+++|+|....|++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44444 45899999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCE-EEEE-ECCCEE
Q 003556 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT-LLCG-LHESLK 251 (811)
Q Consensus 174 t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~-Lasg-s~d~I~ 251 (811)
++.++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++|...++++.|+|-..- |.+| .++++.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999996544 4444 455799
Q ss_pred EEEecCCceeeee-eccccceeEeeec-CCCEEEEEECCCeEEEEE
Q 003556 252 VFSWEPIRCHDAV-DVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 252 Vwd~~~~~~~~~~-~~~~~~i~~l~~~-dg~lLasg~~Dg~V~IWd 295 (811)
.|.+...+....+ ..+-..+.++.+| =|.+|++|+.|.++++|.
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999855544433 3444566677764 588999999999999994
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=2.7e-30 Score=262.27 Aligned_cols=287 Identities=23% Similarity=0.385 Sum_probs=255.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl-~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
..+..+.+|.+.|+++.|+| ++.+||+|+.|..|.+|++ ...+....+++|.++|..+.|.++++.|++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 34567889999999999999 7889999999999999995 566778889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
||.++|+.++.+++|..-+.+++-+.-|. ++.+|+.||++++||+++..+++++. .+.+++++.|..++..+.+|+-|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 99999999999999999999998665555 57788999999999999999998886 46679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCC----CCeeEEEEe
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPET----SGVRCLTFN 236 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----~~l~~~~~~~----~~I~sl~fs 236 (811)
+.|++||++.+...+.+.+|...|+.+..+|+|.++.+-+.|.++++||++-+ .++..+.++. ......+|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999999999999999999999999999999999999999999999999864 3455555542 235677899
Q ss_pred cCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEE
Q 003556 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
|++..+.+|+.+ .+.+||....++.-.+..+...+..+.+ +...+|.+++.|.+|++=.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999777 5899998888888888888888888877 4668999999999987643
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=2.5e-30 Score=275.38 Aligned_cols=295 Identities=17% Similarity=0.373 Sum_probs=260.8
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC--c--eEEEec------C----CCCCeEEEEEcCCCCEEEEEEC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--N--AILSLS------G----HTSGIDSVSFDSSEVLVAAGAA 79 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~--~--~~~~l~------~----h~~~V~~l~fspdg~~Lasgs~ 79 (811)
.|..+|.+++|+|-...++++|+.|-+.++|++... . ....++ + .+..|++++|+.+|.+||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 399999999999966668999999999999998531 1 111111 1 2367999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
||.+++|+. .|..+.++..|+++|.++.|+..|.||++++.|+++.+||..++...+.+.-|..+...+.|-.+ ..|+
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA 333 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence 999999995 57788899999999999999999999999999999999999999999999989888778899754 4688
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCC
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (811)
+.+.||.|+++-+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||..........+..|...|..+.|+|+|
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---------CEEEEE-ECCCEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCceeeeecc
Q 003556 240 ---------RTLLCG-LHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 240 ---------~~Lasg-s~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
..|+++ .+..+++||...+.+...+..+..+++.+.+ ++|+++++|+.||+|.||+..++++-.-+.+.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 345544 5557999999999999999889999999877 89999999999999999999999988766655
Q ss_pred ce
Q 003556 309 VT 310 (811)
Q Consensus 309 ~~ 310 (811)
..
T Consensus 494 ~~ 495 (524)
T KOG0273|consen 494 GG 495 (524)
T ss_pred Ce
Confidence 44
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=281.54 Aligned_cols=294 Identities=21% Similarity=0.409 Sum_probs=251.0
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEEC-CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~-Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
.++.+.--..+|..++|+. .|..||.|+. -|.+-||++.....+...++|...+++++++|||.++++|+.||+|+||
T Consensus 299 lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3455556667899999987 5667777765 4899999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~-~~I~si~fspdg~~L~sgs~Dg 165 (811)
|..++-++.++..|...|+.++|+..|+.+++.+.||+|+.||+...+..+++.... -...|++..|.|..+++|+.|.
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999999999999999999999999999999999999999999999999987533 3577899999999999999987
Q ss_pred e-EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEE
Q 003556 166 T-VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 166 ~-I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (811)
. |.+|++.+|+.+..+.+|+++|.+++|+|++..|++|+.|.+|++||+-........-.....+..++|+|||+-|++
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence 4 999999999999999999999999999999999999999999999998654322222234567899999999999998
Q ss_pred EECC-CEEEEEecCCceeeee--------------------eccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 245 GLHE-SLKVFSWEPIRCHDAV--------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~~~--------------------~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
++-+ .|.+||.+.......+ ......+..+.. .||..+.+|+....|++|++..+-+.
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 8666 6999998755433211 111233445544 79999999999999999999987654
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=250.66 Aligned_cols=262 Identities=24% Similarity=0.427 Sum_probs=230.0
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (811)
...+..+++...+.|+.+.+.| +++.||+++. ..|++||+.++ .++.++.+|+..|..+.|..+|+.+++|+.||+
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred cCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 3456678888888999999999 5667777765 56999999765 468999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~-h~~~I~si~fspdg~~L~sg 161 (811)
++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+.. ....|.++...|||.+++.+
T Consensus 107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 9999999977777776 789999999999999999999999999999998877665543 34679999999999999999
Q ss_pred ECCCeEEEEECCCC------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEE
Q 003556 162 GEDNTVKLWDLTAG------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLT 234 (811)
Q Consensus 162 s~Dg~I~IwDl~t~------~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~ 234 (811)
...|.+++|++-.. +.+.+|+.|.+.+..+.++|++++||+++.|.+++||+++++ +....+.+|...+...+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999998764 356678889999999999999999999999999999999988 66677889999999999
Q ss_pred EecCCCEEEEEECC-CEEEEEecCCceeeeeecccc
Q 003556 235 FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWS 269 (811)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~ 269 (811)
||.||.||++|+.+ ..++|++..++.......+..
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred eccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 99999999999777 699999998887766655544
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.3e-29 Score=270.89 Aligned_cols=287 Identities=22% Similarity=0.386 Sum_probs=240.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
..+..|..-|+|+.|+| ++.++++.+.||+|.+||=.+++.+..+. +|.+.|.++.|+||+..+++++.|.+++||
T Consensus 184 ~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 35678999999999999 57789999999999999999999999998 899999999999999999999999999999
Q ss_pred ECCCCeEEEE-------------------------------------------EcCCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 87 DLEEAKIVRT-------------------------------------------LTGHRSNCISVDFHPFGEFFASGSLDT 123 (811)
Q Consensus 87 Dl~t~~~v~~-------------------------------------------l~~h~~~I~sl~fspdg~~Lasgs~Dg 123 (811)
|+.+.+++++ +.+|...|+++..++++.+|++|+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 9876654333 458999999999999999999999999
Q ss_pred cEEEEECCCCeEE-----------EE--------------------E---------------------------------
Q 003556 124 NLKIWDIRKKGCI-----------HT--------------------Y--------------------------------- 139 (811)
Q Consensus 124 ~I~IwDl~~~~~i-----------~~--------------------~--------------------------------- 139 (811)
.|.-||..++..- .. +
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 9999998543210 00 0
Q ss_pred ---------ecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EEecCCCCeEEEEEeCCCCEE
Q 003556 140 ---------KGH--------TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLL 200 (811)
Q Consensus 140 ---------~~h--------~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~--~~~~h~~~V~sv~fspdg~~L 200 (811)
+.+ .....+++++|++..++.|+.||.|++|.+..+.... ....|.++|++++|+||+.+|
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 000 1123578899999999999999999999998765433 345699999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCc-eeeeeeccccceeEeeec
Q 003556 201 ATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVGWSRLSDLNVH 277 (811)
Q Consensus 201 asgs~Dg~I~IwDl~~~~~l~-~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-~~~~~~~~~~~i~~l~~~ 277 (811)
|+|...+.+.+||+.+.+... .+..|...|.+++|+|+...+|+|+-| .+.||+++.-. ....-..+-..+..+.+.
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 999999999999999877633 355689999999999999999999888 59999987533 333334555558889999
Q ss_pred CCCEEEEEECCCeEEEEEec
Q 003556 278 EGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 278 dg~lLasg~~Dg~V~IWdvd 297 (811)
+...+++++.|.+|++|.+.
T Consensus 583 de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 583 DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cCceEEeccCcceeEEeccc
Confidence 99999999999999999874
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.2e-29 Score=303.47 Aligned_cols=283 Identities=20% Similarity=0.311 Sum_probs=237.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC----c----eEEEecCCCCCeEEEEEcC-CCCEEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----N----AILSLSGHTSGIDSVSFDS-SEVLVAAGAAS 80 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~D 80 (811)
..+.+|.+.|++++|+| ++.+||+|+.|++|+||+.... . ....+. +...|.+++|++ ++.+|++++.|
T Consensus 477 ~~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred ccccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC
Confidence 34566999999999999 6789999999999999997531 1 222333 346899999987 47899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEE
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT-PDGRWV 158 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fs-pdg~~L 158 (811)
|+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++.++..+..+ ..+.++.|+ ++|.+|
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 9999999999999999999999999999997 7889999999999999999999998888754 679999995 579999
Q ss_pred EEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCee
Q 003556 159 VSGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVR 231 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~------~~~l~~~~~~~~~I~ 231 (811)
++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|++|++||+.. +.++..+.+|...+.
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 999999999999998765 466778899999999997 678999999999999999974 357788899999999
Q ss_pred EEEEecCCCEEEEEECC-CEEEEEecCCceeeee-------------eccccceeEeee-cCCCEEEEEECCCeEEEEEe
Q 003556 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-------------~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
+++|++++.+|++|+.+ .+.+|+.........+ ..+...+..+.+ +++..|++|+.||.|+||++
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999876 5999987543211110 112234566665 68899999999999999986
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.6e-29 Score=276.45 Aligned_cols=290 Identities=24% Similarity=0.419 Sum_probs=259.5
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-GTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-G~I~IWDl~t 90 (811)
|......|+|.+|++ +.++||+|-..|...+|.+.....++.+.-...+|..++|+..|..|+.|+.. |.+-||++.+
T Consensus 261 ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 333447899999999 88999999999999999999999999999888999999999999999998764 8999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~Iw 170 (811)
...+...++|...+.+++++|||+++++|+.||.|++||...+-|+.+|..|...|+.+.|+..|+.+++++.||+|+.|
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 171 DLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 171 Dl~t~~~i~~~~~h-~~~V~sv~fspdg~~Lasgs~Dg-~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
|+...+..++|... .-+..|++..|.|.++++|+.|. .|.+|++++|+++..+.+|.++|.+++|+|+|..|++|+.|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 99999999998853 34567899999999999999887 69999999999999999999999999999999999999877
Q ss_pred -CEEEEEecCC-ceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCce
Q 003556 249 -SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 249 -~I~Vwd~~~~-~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
++++|+.-.. .....+......+...+-++|+-||++.-||.|.+||+......
T Consensus 500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 6999997543 34444554444444444489999999999999999999876544
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3e-29 Score=260.38 Aligned_cols=302 Identities=18% Similarity=0.314 Sum_probs=265.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
-++.|..|+..|.+++.+| +.++++||+.|..-+||++.++.....+.+|...|+++.|+.+|.+||+|+.+|.|+||+
T Consensus 56 S~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4678999999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
..++.....+......|.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 99999998887777889999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--------CCCCeeEE---EE
Q 003556 168 KLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--------ETSGVRCL---TF 235 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~--------~~~~I~sl---~f 235 (811)
++||+.++.++..+.. ......++.++..+..++.|+.++.+++-+..+++.+....+ +...+.++ .|
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 9999999999988874 344678899999999999999999999999999998877653 33334444 45
Q ss_pred ecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCceeeeecccee
Q 003556 236 NPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 311 (811)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~ 311 (811)
+..=.+.|+|+-+ .|.|||+...+........-. +..+.+.+..+|+++..+|.|+.||..++++.--+.++...
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheeccCCCc-eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchh
Confidence 5555666777655 699999988766555443333 66677766899999999999999999999999888887654
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=278.70 Aligned_cols=243 Identities=28% Similarity=0.590 Sum_probs=222.7
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
+++|.++|.++.|++ ++.++++|+.+|.|++|+..- +.++.+.+| ...|++++|+|+...+++++.||+|+|||...
T Consensus 134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 568999999999999 788999999999999999754 444445555 49999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~Iw 170 (811)
.+.-+.+.+|...|.+++|+|...+|++|+.|..|++||.+++.|+.++.+|+..|..+.|.|++++|++++.|..+++|
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEEECC
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
|+++-+.++.+++|...++++.|+| +..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.+
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 9998889999999999999999999 5779999999999999999866666555 5788999999999999999999877
Q ss_pred -CEEEEEec
Q 003556 249 -SLKVFSWE 256 (811)
Q Consensus 249 -~I~Vwd~~ 256 (811)
.+++|.-.
T Consensus 372 ~t~rfw~r~ 380 (464)
T KOG0284|consen 372 RTVRFWTRN 380 (464)
T ss_pred cceeeeccC
Confidence 68888643
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.9e-28 Score=263.88 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=247.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (811)
+-++.||...|++++|-|.....++||++|++|.+|+=.-.+.-.++..|...|.|+.|+|||.++++.+.||+|.+||-
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 45789999999999999977888999999999999986666667788889999999999999999999999999999999
Q ss_pred CCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---------------------------
Q 003556 89 EEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------------------------- 138 (811)
Q Consensus 89 ~t~~~v~~l~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------------------------- 138 (811)
.+++.+..+. +|.+.|.++.|+||+..|++++.|.+++|||+.+.+++.+
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 9999999998 8999999999999999999999999999999976654433
Q ss_pred ----------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE------------------------
Q 003556 139 ----------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL------------------------ 178 (811)
Q Consensus 139 ----------------~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i------------------------ 178 (811)
+.+|...|+++..+|++.+|++|+.||.|.-||..++..-
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 2478999999999999999999999999999998654110
Q ss_pred -------EE------------------------------------------EecC--------CCCeEEEEEeCCCCEEE
Q 003556 179 -------HD------------------------------------------FKCH--------EGQIQCIDFHPHEFLLA 201 (811)
Q Consensus 179 -------~~------------------------------------------~~~h--------~~~V~sv~fspdg~~La 201 (811)
+. ++.+ .....+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 00 0000 01245788999999999
Q ss_pred EEECCCeEEEEECCCCeEE--EEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceee-eeeccccceeEeee-
Q 003556 202 TGSADRTVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD-AVDVGWSRLSDLNV- 276 (811)
Q Consensus 202 sgs~Dg~I~IwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~-~~~~~~~~i~~l~~- 276 (811)
.|+.||.|++|.+....+. .....|.++|++++|+||+.||++|... .+.+|+........ .+..+..++.++.+
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 9999999999999886643 3467789999999999999999999655 59999998876632 34456678888877
Q ss_pred cCCCEEEEEECCCeEEEEEecC
Q 003556 277 HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 277 ~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
++++++|+|+-|.+|.||.++-
T Consensus 540 P~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CCceEEEeccccceEEEEEccC
Confidence 7899999999999999999875
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.8e-30 Score=264.89 Aligned_cols=251 Identities=24% Similarity=0.410 Sum_probs=239.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003556 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (811)
Q Consensus 52 ~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~ 131 (811)
...+.+|.+.|.|+++.|...+|++|+.|++|+|||+.+|+...++.+|...|..+++++-..|+++++.|+.|+.||++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 132 ~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|....+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeE
Q 003556 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCV 291 (811)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V 291 (811)
||++.++....+..|...+++++.+|....+++++.|.|+-|++..+.....+..+...+..+...+..++++|++.|.+
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 99999999999999999999999999999999999999999999998887778888888999999999999999999999
Q ss_pred EEEEecCCCce
Q 003556 292 GVWVVDISRIE 302 (811)
Q Consensus 292 ~IWdvd~~~~~ 302 (811)
.+||...+..=
T Consensus 384 ~fwdwksg~ny 394 (460)
T KOG0285|consen 384 MFWDWKSGHNY 394 (460)
T ss_pred EEEecCcCccc
Confidence 99999876543
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=276.96 Aligned_cols=294 Identities=20% Similarity=0.406 Sum_probs=269.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
+|..|+..|.|+.|+| ....++++-.+|.|.|||.++...+..+.-..-+|.+..|-+..+.+++|+.|..|+||+.++
T Consensus 8 k~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4566999999999999 777899999999999999999999999998899999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVK 168 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~ 168 (811)
++.+..|..|.+.|.+++.||...++++++.|-.|++||.+.. .+.++|.+|...|.+++|.| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999864 57889999999999999999 778999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCC--CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHE--FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~V~sv~fspdg--~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (811)
+|.+.+..+..++++|...|+|++|-+.| .+|++|+.|.+|+|||.++..++.++.+|...|..+.|+|.=.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99999999999999999999999998854 6999999999999999999999999999999999999999999999999
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeEeeec-CCCEEEEEECCCeEEEEEecCCCceeeeecc
Q 003556 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~-dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
+| +++||+-.+.+....+..+..++.++..+ .+..++.|+++|.|. +..++-.|.+...
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~---v~lgreeP~vsMd 307 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT---VKLGREEPAVSMD 307 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE---EEccCCCCceeec
Confidence 88 59999999999999999999998888874 446788999998774 3566666655544
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=283.03 Aligned_cols=284 Identities=25% Similarity=0.475 Sum_probs=252.6
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..|..|.++|..++|+| ...++++||+|.+|+||+..+.+++.++.||-+.|..+.|++.-..|++++.|.+|+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 4567899999999999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----------------------------eEEEE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------------------------GCIHT 138 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~-----------------------------~~i~~ 138 (811)
+.+.+++..+.||...|.|..|+|..+.++++|.|-+|++||+..- -..+.
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999998421 02345
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 139 ~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
+.+|...|+.++|+|.-..|++|++|..|++|.+...+ .+.+..+|.+.|.++-|||...++++.++|++|++||+.+
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 67999999999999999999999999999999987654 2445668999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEe
Q 003556 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdv 296 (811)
.+.++.++...+..+.++-+|..+++++|.+.++.||-++..+.. .+.+++.++.+- |..|+-+|+
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa------------~~v~~n~LfYvk--d~~i~~~d~ 347 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA------------YAVNGNGLFYVK--DRFIRSYDL 347 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce------------EEEcCCEEEEEc--cceEEeeec
Confidence 999999988889999999999999999999999999999865532 233555555554 888999999
Q ss_pred cCCCceeeee
Q 003556 297 DISRIEPYTI 306 (811)
Q Consensus 297 d~~~~~p~~~ 306 (811)
.+.+-.++..
T Consensus 348 ~t~~d~~v~~ 357 (1202)
T KOG0292|consen 348 RTQKDTAVAS 357 (1202)
T ss_pred cccccceeEe
Confidence 8866655544
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=268.00 Aligned_cols=273 Identities=22% Similarity=0.483 Sum_probs=234.9
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (811)
....|.|+.+. ...+++|..|.+|+|||..+..++..+.||++.|.|+.|. .+.|++|+.|.+|++||+++++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 45689999995 3459999999999999999999999999999999999985 559999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 95 ~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
.++-+|...|..+.|+ +.++++++.|.+|.+||+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999998 6799999999999999998654 234467899999999996 56999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CE
Q 003556 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (811)
Q Consensus 172 l~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (811)
+.+++.+.++.+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..+.+|..-|+++.|. .+.|++|..| .|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 9999999999999999999886 58899999999999999999999999999999999999995 5677777555 69
Q ss_pred EEEEecCCcee---------eeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCc
Q 003556 251 KVFSWEPIRCH---------DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 251 ~Vwd~~~~~~~---------~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
+|||+...... ....-+.+.+..+.+ |...+++++.|.+|-|||+..+..
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee-cceEEEeccCCCeEEEEEcCCCCc
Confidence 99999865433 222334445555654 445566778888999999986543
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.5e-28 Score=251.50 Aligned_cols=246 Identities=35% Similarity=0.683 Sum_probs=227.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..+..|...+.++.|+| ++.++++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.+|.|.+||
T Consensus 43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 4467788999999999999 557899999999999999998888888999999999999999988998888899999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
+.+++....+..|...+.+++|+|++.++++++.+|.|++||++.++.+..+..|...+.++.|+|+++.+++++.+|.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 99999999999999999999999999999998889999999999999999999999899999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
++||++.++.+..+..|...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|++++.+|++++.
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 99999999999888788889999999999999999888999999999999999988888899999999999999998877
Q ss_pred C-CEEEEE
Q 003556 248 E-SLKVFS 254 (811)
Q Consensus 248 d-~I~Vwd 254 (811)
+ .+++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 6 588884
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.6e-29 Score=279.01 Aligned_cols=292 Identities=24% Similarity=0.397 Sum_probs=262.3
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
..|...+..|..++|+| ...+++++-..|.|++||..-+.++..|..|.++|..++|+|++.++++|+.|-+|++|+..
T Consensus 3 tkfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45667778999999999 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
+.+++.++.||.+.|..+.|++.-..|+++|.|-+|+||+.++++++..+.+|...|.|.+|+|....+++++-|.+|++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC--------C---------------------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe--
Q 003556 170 WDLTA--------G---------------------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-- 218 (811)
Q Consensus 170 wDl~t--------~---------------------~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-- 218 (811)
||+.. + -..+.+.+|...|+-++|||.-.++++|+.|+.|++|....-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 99852 1 1233467899999999999999999999999999999987544
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
.+.+..+|...|.++-|+|...++++.++| .|+|||++..++...+.....+...+..|..--|.+++.|+-+.||.++
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 355678999999999999998899888777 6999999999999999888888888888766556666677778888887
Q ss_pred CCCce
Q 003556 298 ISRIE 302 (811)
Q Consensus 298 ~~~~~ 302 (811)
-.+..
T Consensus 322 RErpa 326 (1202)
T KOG0292|consen 322 RERPA 326 (1202)
T ss_pred ccCce
Confidence 54433
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=242.02 Aligned_cols=283 Identities=21% Similarity=0.312 Sum_probs=246.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
.++..+..|+++|..+.|+- +++|.++++.|.+|++|+...+.+++++.+|...|..++.+.|...+++|+.|..+.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 46778899999999999998 78899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK--KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~--~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
|+++|+.++.+.+|.+.|..+.|+.+...+++|+.|..+++||.+. .++++.+......|.++... +..|++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 9999999999999999999999999999999999999999999985 46788888888899999886 6689999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCee--EEEEecCCCEE
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVR--CLTFNPDGRTL 242 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~--sl~fspdg~~L 242 (811)
|+++.||++.|+....+- ..+|++++|+++++.+++++.|+++++.|-.+|+++..+.+|...-. ..+++.....+
T Consensus 165 GtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999999999998877665 46799999999999999999999999999999999999999866543 44667777888
Q ss_pred EEEECCC-EEEEEecCCceeeeeeccccc-eeEeeecCCC-EEEEEECCCeEEEEE
Q 003556 243 LCGLHES-LKVFSWEPIRCHDAVDVGWSR-LSDLNVHEGK-LLGCSYNQSCVGVWV 295 (811)
Q Consensus 243 asgs~d~-I~Vwd~~~~~~~~~~~~~~~~-i~~l~~~dg~-lLasg~~Dg~V~IWd 295 (811)
++|++|+ +.+||+........+.++... +.++..|... -+.++ .++.+..|.
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~ 297 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA-TGHGDLFWY 297 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe-cCCceecee
Confidence 9998886 888999888777777666665 6777775442 22222 334555563
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=282.12 Aligned_cols=247 Identities=25% Similarity=0.553 Sum_probs=225.2
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl-~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
.++.+.+|...|++++|+| ++.++++|+.|++|+|||+ ..+..++.+.+|...|++++|+|+++++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 4556689999999999999 6679999999999999999 6668999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCC--eEEEEEcCCCCEEEEEE
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRG--VNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~~~~h~~~--I~si~fspdg~~L~sgs 162 (811)
|+++++++..+.+|.+.|++++|++++.+|++++.|+.|++||+.++. ++..+.++... +++++|+|++.++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999998 66777776655 99999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCC---eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEecC
Q 003556 163 EDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPD 238 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~---V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~-~~~I~sl~fspd 238 (811)
.|+.+++||+..+.....+.+|... +.+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|++.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999999999988764 344455778999999999999999999999999999999 888999999999
Q ss_pred CCEEEEEE---CCCEEEEEe
Q 003556 239 GRTLLCGL---HESLKVFSW 255 (811)
Q Consensus 239 g~~Lasgs---~d~I~Vwd~ 255 (811)
..++++++ +..+++|..
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCeeeecCcCCCceEEEecC
Confidence 99999876 334777754
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-29 Score=259.29 Aligned_cols=245 Identities=26% Similarity=0.465 Sum_probs=232.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
...+++|.+.|..++|+. .+++|++++.|=.+++||.++ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|+
T Consensus 143 e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 456789999999999998 779999999999999999976 678888899999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-------------
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------------- 154 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd------------- 154 (811)
+.++-++.++.+|...+..++.+.||..+++++.|.+|++|-+.++.+...+..|.-+|.|++|.|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003556 155 --GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (811)
Q Consensus 155 --g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~s 232 (811)
+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++++++..+..|..-+++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 258999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEECC-CEEEEE
Q 003556 233 LTFNPDGRTLLCGLHE-SLKVFS 254 (811)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd 254 (811)
+.|+.+..++++|+-+ ..++|.
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecCCCCceEEeccccceeeeee
Confidence 9999999999999776 688885
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=273.96 Aligned_cols=290 Identities=25% Similarity=0.413 Sum_probs=257.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..+.|..+.|..++|--...++||+++..+.+++|+..+..+. .+.||+..|.++....+|.+|++|+.|.++++|.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 345677888999999986657889999999999999999877776 7899999999999667789999999999999998
Q ss_pred CCCCe----EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeE-----EE----EEecCCCCeEEEEEcC
Q 003556 88 LEEAK----IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGC-----IH----TYKGHTRGVNAIRFTP 153 (811)
Q Consensus 88 l~t~~----~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~-----i~----~~~~h~~~I~si~fsp 153 (811)
++++. ++....+|...|.+++++..+ .+|+++|.|++|++|++...+. +. +...|...|+|++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 85443 455667899999999997655 4899999999999999986221 11 2346999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003556 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl 233 (811)
+...+++|+.|.+.+||++........+.+|...|+++.|+|+...+++++.|++|+||.+.++.++.++.+|...|..+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecC
Q 003556 234 TFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.|-.+|+.|++++.+ -+++|+.++..|...++.+...+..+.. +.+..+++|+.||.|-+|.=.+
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999877665 5999999999999999999999888876 6778999999999999995444
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=273.17 Aligned_cols=308 Identities=26% Similarity=0.491 Sum_probs=255.6
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCC-cEEEEEECCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~-~lLatgs~Dg~I~VWdl~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (811)
+..+.++.|+||.+.|..+.|+|+-. .+|++|..|+++++||+.+. .++..+..|.+.|++++|.+++..+++++.|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 45688999999999999999999543 36899999999999999844 45788889999999999999999899999999
Q ss_pred eEEEEECCCCeE--------------------------E-----------------------------------------
Q 003556 82 TIKLWDLEEAKI--------------------------V----------------------------------------- 94 (811)
Q Consensus 82 ~I~IWDl~t~~~--------------------------v----------------------------------------- 94 (811)
.+.+||+.+.+. +
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 999998621100 0
Q ss_pred ----------------------------------------------------------------EEEcCCCCCeEEEEEe
Q 003556 95 ----------------------------------------------------------------RTLTGHRSNCISVDFH 110 (811)
Q Consensus 95 ----------------------------------------------------------------~~l~~h~~~I~sl~fs 110 (811)
..+.+|...|.+++..
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 0033677777777755
Q ss_pred CCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-----EE-
Q 003556 111 PFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL-----LH- 179 (811)
Q Consensus 111 pdg~~Lasgs~Dg~I~IwDl~~~~----~i~~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~-----i~- 179 (811)
.+|.+|++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|++++.|+++++|++...+. ..
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 567899999999999999774432 456677899999999997643 5899999999999999976221 11
Q ss_pred ---EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 180 ---DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 180 ---~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
....|...|+|++++|+..++|+|+.|.+.+||+++....+..+.+|..+|.++.|+|..+.+++++.| +++||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 223689999999999999999999999999999999999999999999999999999999999988777 6999999
Q ss_pred cCCceeeeeeccccceeE-eeecCCCEEEEEECCCeEEEEEecCCCceeeeecccee
Q 003556 256 EPIRCHDAVDVGWSRLSD-LNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 311 (811)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~-l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~ 311 (811)
.+..|...+..+...+.. .+..+|+.|++++.||-+++|++.+..+..-...+..+
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 999999999987766544 45588999999999999999999999988655544433
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.7e-28 Score=241.18 Aligned_cols=286 Identities=21% Similarity=0.297 Sum_probs=247.6
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
.++||..+++.+.|+. ++.+|++++.|.+..||-..+|+.+-++.||++.|+|+..+.+.+++++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4779999999999998 788999999999999999989999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-----CCcEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIR-------KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-----Dg~I~IwDl~-------~~~~i~~~~~h~~~I~si~fspdg~~L 158 (811)
|+++.+++ ...+|..+.|+++|++++.... .+.|.++|++ ..+++..+..+...++.+-|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999998 6788999999999998877654 4689999998 456688888888999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEec
Q 003556 159 VSGGEDNTVKLWDLTAGKLL-HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i-~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (811)
++|.+||.|.+||+++|+.. ..-..|...|+.++|+++..++++++.|.+-++||..+.+.+.++... .+|++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence 99999999999999998554 444678999999999999999999999999999999999999888764 7899999999
Q ss_pred CCCEEEEEECC-CEEEEEec--CC------------ceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCC
Q 003556 238 DGRTLLCGLHE-SLKVFSWE--PI------------RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~--~~------------~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
....++.|+.. ..-|=-.. .+ +...-+..++.++..+.+ ++|+..++|++||.|++.-++..
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 87777765432 22221111 11 223345789999999988 68999999999999999977754
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5e-28 Score=264.51 Aligned_cols=254 Identities=24% Similarity=0.454 Sum_probs=234.0
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (811)
....-++.|.-..-+|.+++|-+ ..+.+++|++|..|+||+.++++.+..+..|.+.|.|++.+|...++++++.|-+|
T Consensus 43 etqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 34445667777888999999998 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC-eEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEE
Q 003556 84 KLWDLEEA-KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--DGRWVV 159 (811)
Q Consensus 84 ~IWDl~t~-~~v~~l~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp--dg~~L~ 159 (811)
++||.+.. .+.+++.||...|.+++|.| |.+.|++++.|++|++|.+.+..+..++++|...|.|+.|-+ |..+|+
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99999864 68899999999999999999 456899999999999999999999999999999999999988 446999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCC
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (811)
+|++|..|+|||..+..|++++.+|...|..+.|||.-.++++|++||+++||...+.++...+.-....++|++-.+.+
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888887778889999999999
Q ss_pred CEEEEEECCCEEEEEecCC
Q 003556 240 RTLLCGLHESLKVFSWEPI 258 (811)
Q Consensus 240 ~~Lasgs~d~I~Vwd~~~~ 258 (811)
..+++|.+++..+..+...
T Consensus 282 ~~i~vG~Deg~i~v~lgre 300 (794)
T KOG0276|consen 282 GKIAVGFDEGSVTVKLGRE 300 (794)
T ss_pred CeEEEeccCCcEEEEccCC
Confidence 9999999988766666443
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-28 Score=255.89 Aligned_cols=288 Identities=16% Similarity=0.295 Sum_probs=246.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (811)
+..+.+..|.+.|+-+.|++ +|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++++.+..+
T Consensus 215 qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 34567889999999999999 8899999999999999998443 4477888999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEE
Q 003556 84 KLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~-~~I~si~fspdg~~L~sg 161 (811)
.+||+.+|.....+. ++...+.+++|.|||..|++|+.|+.|..||+.. ..+..+++-. ..|.+++.++||+++++.
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEE
Confidence 999999999888775 3467899999999999999999999999999864 4455555433 459999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC--eeEEEEec-C
Q 003556 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG--VRCLTFNP-D 238 (811)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~--I~sl~fsp-d 238 (811)
+.|..|++|+..+......+. ...+|++++.+.+++++++.-.+..+++||++..+.+..+.+|... +..-+|-. +
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred ecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 999999999988765554443 5678999999999999999999999999999998888888888554 33334543 4
Q ss_pred CCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee--cCCCEEEEEECCCeEEEEEec
Q 003556 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~--~dg~lLasg~~Dg~V~IWdvd 297 (811)
..++++|++| .++||+-..++...++..+...+.++.+ .+-.++|++++||+|+||-..
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 5789999988 5999999999999999998888888877 456799999999999999665
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.7e-28 Score=240.69 Aligned_cols=289 Identities=18% Similarity=0.347 Sum_probs=260.4
Q ss_pred EEEecCCCCEEEEEEee--CCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 10 QEFVAHSSTVNCLKIGR--KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp--~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
....+|+.+|..++|+| .++.+|++++.||.-.+-+-++|..+.++.+|.+.|+....+.+...-++++.|=+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46789999999999987 4688999999999999988899999999999999999999999988999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|....+.|+++..|+.
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999987 99999999999999999999999999999998654 56778899999999999998899999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE
Q 003556 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (811)
|++||.++++.++.+. ...+|+++.++++|.+|.++. .+.|.+||..++.++..+... ..|.+.+++|+...+++|.
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccCCCceEEecC
Confidence 9999999999999988 578899999999998877764 567999999999999887654 5589999999998888888
Q ss_pred CC-CEEEEEecCCceeeee-eccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 247 HE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~-~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
++ .+..||+.++.....+ ..+.+++.++.+ ++|.+.++|++||+|++|.+..++.-
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 77 4888999998887775 788899999877 89999999999999999988776543
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=269.51 Aligned_cols=250 Identities=21% Similarity=0.426 Sum_probs=211.1
Q ss_pred ceeEEEEe-cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC--------------------------------C---
Q 003556 6 AYKLQEFV-AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--------------------------------P--- 49 (811)
Q Consensus 6 ~~ki~~~~-~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t--------------------------------~--- 49 (811)
.+..|++. +|.+.|+|+.|++ +|+|||+||.||.|+||.+.. .
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eEEeeccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 35667888 9999999999999 789999999999999998743 0
Q ss_pred -------------------------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCe
Q 003556 50 -------------------------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC 104 (811)
Q Consensus 50 -------------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I 104 (811)
++++.+.||.+.|.+|.|+.++ +|++++.|.+|++|++...++++.|. |.+.|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCee
Confidence 1233466899999999999765 77899999999999999999999998 99999
Q ss_pred EEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 003556 105 ISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183 (811)
Q Consensus 105 ~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (811)
+|++|+| |.+||++|+.||.|+||++...+.+.-... ..-|++++|.|||++.++|+.+|.+++|+....+....+..
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999 667999999999999999998887766554 47799999999999999999999999999998877665542
Q ss_pred --C------CCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCCC--CeeEEEEecCCCEEEEEECC-CEE
Q 003556 184 --H------EGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLK 251 (811)
Q Consensus 184 --h------~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~ 251 (811)
+ ...|+.+.|.|.. ..+++.+.|..|+|||.+...++..+++... .-....|+.||++|+++++| .+.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1 2379999999854 3577778899999999998888888876533 23567899999999999988 588
Q ss_pred EEEecCCc
Q 003556 252 VFSWEPIR 259 (811)
Q Consensus 252 Vwd~~~~~ 259 (811)
||+++...
T Consensus 572 iW~~~~~~ 579 (712)
T KOG0283|consen 572 IWKNDSFN 579 (712)
T ss_pred EEeCCCCc
Confidence 88876543
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.2e-28 Score=247.99 Aligned_cols=280 Identities=21% Similarity=0.385 Sum_probs=244.3
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec--------CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--------GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
+..+-+-|..|+| ++++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+.|...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 5567789999999 78899999999999999998887655433 47789999999999999999999999999
Q ss_pred EECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 86 WDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 86 WDl~t~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
|.+++|.+++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|.+||.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999997 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEec--CCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEecC
Q 003556 165 NTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPD 238 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~--h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~l~~~~---~~~~~I~sl~fspd 238 (811)
|+|++|+..+.+++.+|+. ...+|+.+..-|. -..++++...++|+|.++. |+.+..+. ...+...+.+++|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999999985 4567888888774 5678888889999999987 66666653 23556777889999
Q ss_pred CCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeeec-CCCEEEEEECCCeEEEEE
Q 003556 239 GRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 239 g~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~i~~l~~~-dg~lLasg~~Dg~V~IWd 295 (811)
|.++++.++|+ +.-|.+..++....+.++...+-.+.-| ..+++++-++||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999887775 6777888888888888877766666654 456888889999999994
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=259.01 Aligned_cols=284 Identities=24% Similarity=0.368 Sum_probs=253.7
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
.++.+|...|.+++++. +..++++| ..+.|++|+..+.+++.++.. +.+.+..|.|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 56889999999999997 44444444 567899999999999999985 489999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-----Ce--EE------EEEecCCCCeEEEEEcCCCC
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KG--CI------HTYKGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-----~~--~i------~~~~~h~~~I~si~fspdg~ 156 (811)
+...+.+++.|.+.|++++.+||+..+++|+.|.+|++||..- +. .+ .+++ -...|.|+.++|||+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999741 11 11 1122 346799999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
+|+++--|.++++|-+.+-+....+.+|.-||.||..+||+.++++|+.|..|++|-++-|.+-..+.+|...|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecC
Q 003556 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
|+...+++++.+ .++-||-+...+...++.+...+.++.. ++|.++++++.|..|++|...-
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 988888777665 5999999999999999999998888776 8899999999999999996553
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=7.2e-27 Score=237.42 Aligned_cols=263 Identities=24% Similarity=0.380 Sum_probs=228.4
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003556 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (811)
Q Consensus 51 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwD 129 (811)
.+..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. .-+-...+++|.+.|..+.|.+++..|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999964 4456677889999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q 003556 130 IRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (811)
Q Consensus 130 l~~~~~i~~~~~h~~~I~si~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~ 208 (811)
++++++++++++|...|..+.-..-|. ++.+++.||++++||+++...++.+. ...+++++.|...+..+.+|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999888544444 56688899999999999999888886 4678999999999999999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC-CCEEEEEecCC----ceeeeeeccc-----cceeEeeecC
Q 003556 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPI----RCHDAVDVGW-----SRLSDLNVHE 278 (811)
Q Consensus 209 I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~----~~~~~~~~~~-----~~i~~l~~~d 278 (811)
|++||++....++.+.+|..+|+.+..+++|.++.+-+- +.+++||+.+. +|..++..+. ..+.+-..++
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 999999999999999999999999999999999997654 47999999864 4555553332 2344555589
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeeccceeecc
Q 003556 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNG 314 (811)
Q Consensus 279 g~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~~n~ 314 (811)
+..+.+|+.|..|++||....++.-+..++...+|.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 999999999999999999998888777777766653
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=264.34 Aligned_cols=278 Identities=27% Similarity=0.490 Sum_probs=248.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
|...+.|..|.. .+++++..|.+|++|+..++..+.. +.+|.+.|.+++|...+.++++|+.|.++++||..+|++
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 667899999983 4699999999999999999999888 999999999999988788999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~ 173 (811)
...+.+|...+.++... ..++++|+.|.+|++|+++++.++..+.+|..+|.++.++ +.++++|+.||.|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999998876 5678889999999999999999999999999999999998 7899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEE
Q 003556 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (811)
Q Consensus 174 t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (811)
+++++..+.+|...|.++.+... ..+++|+.|++|++||+++. +++..+.+|..-+..+.+ .+++|++++.+ .|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999999999999999988765 79999999999999999999 999999999888877655 46788887666 599
Q ss_pred EEEecCCceeeeeecc-ccceeEeeecCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 252 VFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 252 Vwd~~~~~~~~~~~~~-~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
+||.+...+...+... ...+..+... ...+++++.|+.+.+||+..+....
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 9999999999988774 3444333322 4789999999999999999887764
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=4.2e-26 Score=237.04 Aligned_cols=287 Identities=18% Similarity=0.282 Sum_probs=252.2
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+.++.+|+..|+|+.|+. ++.+||||+-+|.|.||...++.....+...-..|.=+.|+|.+..|++|+.||.+..|.
T Consensus 98 ~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 4678899999999999998 788999999999999999999999988886677888899999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~-h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||+.++.++..+.. ......++.++..+..++.|..++.
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 999889999999999999999999999999999999999999999999988873 3446788999999999999999999
Q ss_pred EEEEECCCCeEEEEEec--------CCCCeEEEEEeC---CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003556 167 VKLWDLTAGKLLHDFKC--------HEGQIQCIDFHP---HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~--------h~~~V~sv~fsp---dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~f 235 (811)
+++....+|+.+..+.+ +...+.++.|.| .=.+.|+|+-||+|.|||+...++.+.. .|..+|..+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence 99999999998887762 344455555554 5568999999999999999987765544 56677999999
Q ss_pred ecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEec
Q 003556 236 NPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
-+ ..+|++++.+ .++.||-.++++...+..+...+.++.. ++.+++++++.|++.+||++.
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 98 5677666555 6999999999999999999988888776 889999999999999999864
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-26 Score=240.36 Aligned_cols=277 Identities=26% Similarity=0.443 Sum_probs=239.6
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~t 90 (811)
-|.+.|.++... +..+++|+.||.+++||. .|+..+.+.||.++|..++|.- ....|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488888888876 467999999999999996 5999999999999999998843 334699999999999999987
Q ss_pred CeE----EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-------------------------CCeEEEEEec
Q 003556 91 AKI----VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-------------------------KKGCIHTYKG 141 (811)
Q Consensus 91 ~~~----v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~-------------------------~~~~i~~~~~ 141 (811)
+.. +..-.||...|.++...++|..|++|+.|..|.||+.. .+.++.++.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 653 23334999999999999999999999999999999932 1235677889
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe---
Q 003556 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--- 218 (811)
Q Consensus 142 h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~--- 218 (811)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...++|+.++|...+|++|+.|..|++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999997 66899999999999999999999888874 6789999999999999999999999999998753
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEE-EEECC-CEEEEEecCCc-eeeeeeccccceeEeeecCCCEEEEEECCCeEEEEE
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIR-CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~La-sgs~d-~I~Vwd~~~~~-~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWd 295 (811)
..+.+.+|...|.++.|+|...+++ +|+.| .+++||....+ .+..+..++..+.++.+.++.++++|+.|++|+|+.
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 4567889999999999999877655 55555 69999998876 677788889999999999999999999999999985
Q ss_pred e
Q 003556 296 V 296 (811)
Q Consensus 296 v 296 (811)
-
T Consensus 417 ~ 417 (423)
T KOG0313|consen 417 G 417 (423)
T ss_pred c
Confidence 3
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=8.3e-26 Score=276.59 Aligned_cols=239 Identities=23% Similarity=0.380 Sum_probs=210.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
+...|.+++|++..+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 3468999999987788999999999999999999999999999999999999996 788999999999999999999998
Q ss_pred EEEEcCCCCCeEEEEEe-CCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 94 VRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fs-pdg~~Lasgs~Dg~I~IwDl~~~~-~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
+..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 8888754 679999995 468899999999999999998765 567788999999999997 788999999999999999
Q ss_pred CCC------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-------------CCCCCCeeE
Q 003556 172 LTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-------------GPETSGVRC 232 (811)
Q Consensus 172 l~t------~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-------------~~~~~~I~s 232 (811)
++. ...+..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+ ..+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 3567888899999999999999999999999999999998765443221 233456999
Q ss_pred EEEecCCCEEEEEECC-CEEEEEe
Q 003556 233 LTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
++|++++..|++|+.+ .|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999988766 5999986
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=244.62 Aligned_cols=278 Identities=23% Similarity=0.380 Sum_probs=241.6
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (811)
-.|+++...|. ...+.||+.|..+.++|...++.+..++||...|+.+.|+++...+++++.|-.|+||..........
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 46888888884 67899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (811)
Q Consensus 97 l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h--~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t 174 (811)
...|..+|+.+..+|.|+||++++.||+..+.|++++.++...... .-.+++.+|+|||..|.+|..||.|+|||+..
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999988776532 23589999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEecCCCEEEEEECCCEEEE
Q 003556 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVF 253 (811)
Q Consensus 175 ~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (811)
+..+..|.+|.++|..++|+.||.||++++.|+.|++||+++.+.+.++... ..++.++.|.+.|.+|+.+ ...++||
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEE
Confidence 9999999999999999999999999999999999999999998877666433 3479999999999999988 4457777
Q ss_pred Eec----CCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEe
Q 003556 254 SWE----PIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 254 d~~----~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
.+. ...+...+..+......+.+ ...+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 776 34455444444444445544 55689999999988887754
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=225.24 Aligned_cols=248 Identities=19% Similarity=0.301 Sum_probs=218.6
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003556 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 51 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl 130 (811)
....+.+|.++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q 003556 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (811)
Q Consensus 131 ~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~ 208 (811)
.+|+.++.+.+|...|+.++|+.+...+++|+.|..+++||.+.. ++++.+......|.++... +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6777787777889888875 568999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEe---eecCCCEEEE
Q 003556 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL---NVHEGKLLGC 284 (811)
Q Consensus 209 I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l---~~~dg~lLas 284 (811)
++.||++.|++..... ..+|++++|++||+..++++-+ .+++.|-++++.+..+..+...-+.+ .......+++
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 9999999999876554 4689999999999998888766 69999999998887765554432222 2245578899
Q ss_pred EECCCeEEEEEecCCCce
Q 003556 285 SYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 285 g~~Dg~V~IWdvd~~~~~ 302 (811)
|++||.|++||+-...+.
T Consensus 245 gSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ccCCceEEEEEeccceee
Confidence 999999999999876654
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.8e-28 Score=249.61 Aligned_cols=239 Identities=26% Similarity=0.547 Sum_probs=209.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..+.||++.|.|+.|. .+++++|+.|.+|+|||+++++++.++-+|...|..+.|+ +.++++++.|.+|.+||
T Consensus 229 c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWD 303 (499)
T ss_pred HHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEe
Confidence 456788999999999995 4699999999999999999999999999999999999996 45899999999999999
Q ss_pred CCCCe---EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 88 LEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 88 l~t~~---~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
+.... +.+.+.||...|..+.|+ .+|+++++.|.+|++|++.+++++.++.+|...|.|+.+. |+++++|+.|
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD 379 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD 379 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC
Confidence 97654 335567999999999997 5799999999999999999999999999999999999885 8899999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---------EEEeCCCCCCeeEEEE
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---------IGSAGPETSGVRCLTF 235 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~---------l~~~~~~~~~I~sl~f 235 (811)
.+|++||+..|.++..+++|+.-|.|+.|. .+.+++|..||+|++||+..+.. +.....|.+.|..+.|
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF 457 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee
Confidence 999999999999999999999999999995 56899999999999999987542 3344567888999999
Q ss_pred ecCCCEEEEE-ECCCEEEEEecCCc
Q 003556 236 NPDGRTLLCG-LHESLKVFSWEPIR 259 (811)
Q Consensus 236 spdg~~Lasg-s~d~I~Vwd~~~~~ 259 (811)
. ...|+++ -++.|-|||+..+.
T Consensus 458 D--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 458 D--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred c--ceEEEeccCCCeEEEEEcCCCC
Confidence 5 4455555 45579999997643
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-25 Score=222.22 Aligned_cols=250 Identities=22% Similarity=0.411 Sum_probs=212.9
Q ss_pred ceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---eEEEEE-cCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003556 50 NAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEA---KIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTN 124 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~---~~v~~l-~~h~~~I~sl~fspdg~~Lasgs~Dg~ 124 (811)
..++.+++|.+.+..++|+|- |..|++++.|..|++|+...+ .+...+ .+|+..|.+++|+|.|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345678899999999999998 899999999999999999853 344444 369999999999999999999999999
Q ss_pred EEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCCCE
Q 003556 125 LKIWDIRK--KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFL 199 (811)
Q Consensus 125 I~IwDl~~--~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~V~sv~fspdg~~ 199 (811)
+.||.-.. .+++.++.+|...|.|++|+++|++|++++.|..|-||.+..+ +++..++.|...|..+.|||...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 99998653 4789999999999999999999999999999999999998744 577788899999999999999999
Q ss_pred EEEEECCCeEEEEECC---CCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEee
Q 003556 200 LATGSADRTVKFWDLE---TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (811)
Q Consensus 200 Lasgs~Dg~I~IwDl~---~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~ 275 (811)
|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++++ .++||..-. .....+...++++.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~----~~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT----DLSGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc----CcchhcccceEeee
Confidence 9999999999999876 467899999999999999999999999999888 599998542 11123334455666
Q ss_pred ecCCCEEEEEECCCeEEEEEecCCCceee
Q 003556 276 VHEGKLLGCSYNQSCVGVWVVDISRIEPY 304 (811)
Q Consensus 276 ~~dg~lLasg~~Dg~V~IWdvd~~~~~p~ 304 (811)
+. ...|++++.|+.|+++.-..+...|.
T Consensus 241 W~-~~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 241 WD-NGVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred ec-ccceEeccCCCEEEEEEecCCCCCch
Confidence 65 67999999999999998775444443
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-26 Score=227.46 Aligned_cols=278 Identities=21% Similarity=0.381 Sum_probs=226.8
Q ss_pred EEEEEEeeCCCcEEEEE-------ECCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 003556 19 VNCLKIGRKSSRVLVTG-------GEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 19 V~~lafsp~~~~lLatg-------s~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl 88 (811)
=.++.|+|--.+.|+++ ...|++.|.++..++-+..+. .-.+.+..++|+++ .+.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 35788998555555544 345899999996555554443 24678999999985 457888899999999997
Q ss_pred CC-CeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC
Q 003556 89 EE-AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDN 165 (811)
Q Consensus 89 ~t-~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg 165 (811)
.. ..++..++.|...|.++.|++.. ..+++++.|++|++|+...+..+.++.+|...|...+|+| .++.+++++.||
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 45888999999999999999854 4688889999999999999999999999999999999999 678999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCC-CEE
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDG-RTL 242 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg-~~L 242 (811)
.+++||++..-....+..|...|.|+.|+. +...|++|+.|+.|+.||+++. .++..+.+|.-.|+.+.|||.. ..|
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 999999997544445888999999999987 5779999999999999999885 4688889999999999999974 466
Q ss_pred EEEECC-CEEEEEecC-CceeeeeeccccceeEeee--cCCCEEEEEECCCeEEEEEe
Q 003556 243 LCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 243 asgs~d-~I~Vwd~~~-~~~~~~~~~~~~~i~~l~~--~dg~lLasg~~Dg~V~IWdv 296 (811)
++++.| +.+||+.+. ..+...++.+..-+..+.+ .++.++|.++-|..++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 777777 799999984 3444555544444433333 57889999999999999985
No 60
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.6e-25 Score=254.97 Aligned_cols=228 Identities=20% Similarity=0.324 Sum_probs=192.5
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCe
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGT 82 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~ 82 (811)
.+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 478999999999999966778999999999999999654 3567889999999999999985 69999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~-I~si~fspdg~~L~sg 161 (811)
|+|||+.+++.+..+.+|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|... +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 4567899988888776
Q ss_pred E----CCCeEEEEECCCCe-EEEEEec-CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCC-CCCCeeEE
Q 003556 162 G----EDNTVKLWDLTAGK-LLHDFKC-HEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP-ETSGVRCL 233 (811)
Q Consensus 162 s----~Dg~I~IwDl~t~~-~i~~~~~-h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~l~~~~~-~~~~I~sl 233 (811)
+ .|+.|++||+++.. .+..... ....+....|++++.+|++++ .|+.|++||+.+++++..... ...++..+
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~ 309 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcce
Confidence 5 47899999998754 3333332 234566678999999999887 599999999999887765433 34456777
Q ss_pred EEecC
Q 003556 234 TFNPD 238 (811)
Q Consensus 234 ~fspd 238 (811)
+|.|.
T Consensus 310 ~~~pk 314 (493)
T PTZ00421 310 CMMPK 314 (493)
T ss_pred Eeccc
Confidence 77774
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.8e-26 Score=251.43 Aligned_cols=273 Identities=26% Similarity=0.414 Sum_probs=240.3
Q ss_pred EEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-
Q 003556 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG- 99 (811)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~- 99 (811)
-++|+. .+.|++|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 182 lldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred Hhhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 356764 445666653 5699999988887666666689999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (811)
Q Consensus 100 h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (811)
|...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+++|++|+.|+.+.|||.......
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999999 77899999999999999998776555 8889999999999999999999999999999999888899
Q ss_pred EEEecCCCCeEEEEEeCC-CCEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE---CCCEEE
Q 003556 179 HDFKCHEGQIQCIDFHPH-EFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL---HESLKV 252 (811)
Q Consensus 179 ~~~~~h~~~V~sv~fspd-g~~Lasgs--~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs---~d~I~V 252 (811)
..+..|...|.+++|+|- ..+||+|+ .|++|+|||+.+++.+..+.. ...|.+|.|++..+-|+++. .+.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 999999999999999995 66888875 699999999999999988765 46799999999998888663 346999
Q ss_pred EEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCC
Q 003556 253 FSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 253 wd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
|.+.+.+....+..+..++..+.. +||..+++|+.|.++++|++-..
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999998888888888887777665 89999999999999999988765
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=260.59 Aligned_cols=247 Identities=21% Similarity=0.409 Sum_probs=205.1
Q ss_pred EEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------------------C--------
Q 003556 53 LSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE--------------------------------A-------- 91 (811)
Q Consensus 53 ~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t--------------------------------~-------- 91 (811)
+.+. .|.+.|+++.|++||+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 7999999999999999999999999999998754 0
Q ss_pred --------------------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003556 92 --------------------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (811)
Q Consensus 92 --------------------~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~f 151 (811)
++++.+.||.+.|..+.|+. .++|++++.|.+|++|++....|+..|. |...|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 12344679999999999996 5699999999999999999999999998 9999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--C--
Q 003556 152 TP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--E-- 226 (811)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~--~-- 226 (811)
+| |.+||++|+-||.|+||++...+.+.-... ..-|++++|.|+|.+.++|+.+|.+++|++...++...... +
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99 889999999999999999998877766554 47899999999999999999999999999998877655321 1
Q ss_pred ----CCCeeEEEEecCCC--EEEEEECCCEEEEEecCCceeeee---eccccceeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 227 ----TSGVRCLTFNPDGR--TLLCGLHESLKVFSWEPIRCHDAV---DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 227 ----~~~I~sl~fspdg~--~Lasgs~d~I~Vwd~~~~~~~~~~---~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
...|+.+.|.|... .|++..+..|+|||.........+ ....+.+..-...||++++++++|..|+||+.+
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 23799999997543 666666668999999655444333 333445555555799999999999999999988
Q ss_pred CCCce
Q 003556 298 ISRIE 302 (811)
Q Consensus 298 ~~~~~ 302 (811)
.....
T Consensus 577 ~~~~~ 581 (712)
T KOG0283|consen 577 SFNSE 581 (712)
T ss_pred CCccc
Confidence 76554
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.1e-24 Score=249.91 Aligned_cols=246 Identities=19% Similarity=0.311 Sum_probs=198.4
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceE-------------EEecCCCCCeEEEEEcC-CCCEEEEEECCCe
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-------------LSLSGHTSGIDSVSFDS-SEVLVAAGAASGT 82 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~ 82 (811)
..|+...+++++. .+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++.+|++|+.||+
T Consensus 21 ~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 4566666666333 3566666666777765433222 23678999999999999 8889999999999
Q ss_pred EEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003556 83 IKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (811)
Q Consensus 83 I~IWDl~t~-------~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd 154 (811)
|++||+.++ +.+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 999999765 3567889999999999999986 69999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEE----CCCeEEEEECCCCe-EEEEeCCC-C
Q 003556 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGS----ADRTVKFWDLETFE-LIGSAGPE-T 227 (811)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-V~sv~fspdg~~Lasgs----~Dg~I~IwDl~~~~-~l~~~~~~-~ 227 (811)
|.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. ++.....+ .
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 999999999999999999999999999888764 45678999877777654 47899999998754 34333323 3
Q ss_pred CCeeEEEEecCCCEEEEEE--CCCEEEEEecCCceeee
Q 003556 228 SGVRCLTFNPDGRTLLCGL--HESLKVFSWEPIRCHDA 263 (811)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~~~~~~~ 263 (811)
..+....|++++.+|++++ ++.|++|++........
T Consensus 260 ~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 4556677999999998775 45699999987765443
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3e-25 Score=221.72 Aligned_cols=275 Identities=22% Similarity=0.355 Sum_probs=234.2
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE--EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLW 86 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~--~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IW 86 (811)
.++++|...|.+++|+. ++..|++|+.|+++.+|++....... ...+|.+.|..++|+| ...++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 67789999999999998 67789999999999999997765444 3468999999999987 45689999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
|+..++++..+....+.+ .+.|+|+|+++++++.|..|.+.|.++.+.....+ ....+..++|+-++.+++....-|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999999887555555 57899999999999999999999999988877766 4566888999988888877777799
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE
Q 003556 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (811)
|.|.....-+.+..++.|.....|+.|+|+|++||+|+.|..+.+||++..-++..+.-+.-+|+.++|+.||++|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeEeeec-CCCEEEEEECC
Q 003556 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQ 288 (811)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~-dg~lLasg~~D 288 (811)
+| .|-|-+.+++.....+.... +...+.+| ...+||-+..|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEG-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccC-CceeEEecCCCceeeEEecC
Confidence 98 47787888776655444332 33445554 44566666554
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-24 Score=219.64 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=241.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA--SGTIKLW 86 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--DG~I~IW 86 (811)
-+.|....+.|+++.|++ +|.++++++.|.+++|||..+++.+.++..+.-.+..++|......++.++. |.+|+..
T Consensus 7 ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 345666788999999998 6778888999999999999999999999999999999999776666666666 8899999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
++.+.+.++.+.||...|..++.+|-++.|++++.|++|++||++..++...+.....+ .++|.|.|-++|++.....
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCe
Confidence 99999999999999999999999999999999999999999999988888777654444 4789999999999988889
Q ss_pred EEEEECCCC--eEEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe---eEEEEecC
Q 003556 167 VKLWDLTAG--KLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV---RCLTFNPD 238 (811)
Q Consensus 167 I~IwDl~t~--~~i~~~~~---h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I---~sl~fspd 238 (811)
|++||++.- .....|.. .....+.+.|+|||++|+.++..+.+++.|.-+|..+..+..+...- ...+|+||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999863 33344432 35678999999999999999999999999999999888876654332 57789999
Q ss_pred CCEEEEEECC-CEEEEEecCCceeeeeec-cccceeEeeecCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
++++++|+++ .|.+|+.+++.....+.. ...++.++.+ +-++....+.+..+-+|-.+.....+
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc-CCceeeeeecCceEEEEeccccccCC
Confidence 9999999886 699999998887776655 3555555554 33444555667789999877665543
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=255.89 Aligned_cols=250 Identities=27% Similarity=0.489 Sum_probs=224.4
Q ss_pred ceeEEE-EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 6 AYKLQE-FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 6 ~~ki~~-~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
.+.+.. +.+|.+.|++++|.. ++.+|++|+.|.++++||..++++...+.+|.+.|.++... ..++++|+.|.+|+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK 314 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE
Confidence 345555 999999999999987 78899999999999999999999999999999999999874 45778889999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
+|+++++..+.++.+|..+|.++..+ +.++++|+.||.|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 99999999999999999999999998 889999999999999999999999999999999999988765 899999999
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEecCCCEE
Q 003556 165 NTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTL 242 (811)
Q Consensus 165 g~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~L 242 (811)
+.|++||+++. +++..+.+|..-+..+.+ .+.+|++++.|++|++||...++++..+.+ |.+.|..+++. +...|
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il 468 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEIL 468 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEE
Confidence 99999999999 999999999988866654 567999999999999999999999999988 67888988887 44455
Q ss_pred EEEECCCEEEEEecCCceeeee
Q 003556 243 LCGLHESLKVFSWEPIRCHDAV 264 (811)
Q Consensus 243 asgs~d~I~Vwd~~~~~~~~~~ 264 (811)
+++.++.+++||+.+..+...+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 5566668999999988776543
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=241.00 Aligned_cols=278 Identities=25% Similarity=0.353 Sum_probs=238.6
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
...+.|.+++|+|....-+|+.+. -.+.||+..+......+......|.++.|..||+++++|+..|.|++||..+...
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 344689999999966655666554 4699999988888887888889999999999999999999999999999777678
Q ss_pred EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q 003556 94 VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd-g~~L~sgs~Dg~I~IwD 171 (811)
++.+.+|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|...|.|.+|+|. +..+++|+.||.|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 889999999999999999765 6888999999999999999876688999999999999994 55889999999999999
Q ss_pred CCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-
Q 003556 172 LTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (811)
Q Consensus 172 l~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (811)
++.. ..+.++. |..+|..+.|-|.|..+|+++. ..|++||+.+ ++.+.....|...|+|+.+..++..|++|+-|
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 9987 6677776 8999999999999999999874 5799999985 56666666699999999999999999887655
Q ss_pred CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEE
Q 003556 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IW 294 (811)
.++||+....+....+......+..-.+++++.++.|..+|.+.+-
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 6999998888887777777666666666889999999999877554
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=243.26 Aligned_cols=280 Identities=27% Similarity=0.424 Sum_probs=246.7
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
..+..|.+.|..+.|-+ +...|++|+.|..|++|++...+ .+.++.|..++|+.+.|.++++++++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35678999999999998 55569999999999999986554 6778888889999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
+...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|..++- ....+..|..+ +..+++|..|+.|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999999877779999999999999999998888776 34556667765 5578999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC----CCCeeEEEEecCCCEEE
Q 003556 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE----TSGVRCLTFNPDGRTLL 243 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~----~~~I~sl~fspdg~~La 243 (811)
++||.++..+......+ +.|+++..+++|..|.+++.|.++.++|+++.+....+... ....+.+.|||++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99999999999988854 59999999999999999999999999999999888776543 34478899999999999
Q ss_pred EEECC-CEEEEEecCCceeeeeeccccc--eeEeee-cCCCEEEEEECCCeEEEE
Q 003556 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSR--LSDLNV-HEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~~~--i~~l~~-~dg~lLasg~~Dg~V~IW 294 (811)
+|+.+ .++||+..++++...+....+. +..+.+ +.|..|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99776 6999999999999888776665 777766 678999999999999999
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.5e-25 Score=257.15 Aligned_cols=290 Identities=19% Similarity=0.353 Sum_probs=244.7
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEE--CCCeEEEEECCC------------CceEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGK------------PNAILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs--~Dg~I~VWdl~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs 78 (811)
..+...|.+++.+| ++..++||+ .||.+.||+.+. .+.+.+...|.+.|+|+.|++||.+||+|+
T Consensus 10 ~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 34445799999999 667899999 899999998631 344566778999999999999999999999
Q ss_pred CCCeEEEEECCC------------------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003556 79 ASGTIKLWDLEE------------------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (811)
Q Consensus 79 ~DG~I~IWDl~t------------------~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~ 140 (811)
.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+..+.+.+..++
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 24678889999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCeEEEEEeCCCCEEEEEEC----CCeEE
Q 003556 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHEFLLATGSA----DRTVK 210 (811)
Q Consensus 141 ~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h------~~~V~sv~fspdg~~Lasgs~----Dg~I~ 210 (811)
+|.+.|..+.|.|-|+||++-++|++|++|++.+..+.+.+..+ ......+.|+|||.+|++... -.++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999999999999999999999998877666666542 234788999999999998753 34789
Q ss_pred EEECCCCeEEEEeCCCCCCeeEEEEecC-----CC------------EEEEEECC-CEEEEEecCCceeeee-eccccce
Q 003556 211 FWDLETFELIGSAGPETSGVRCLTFNPD-----GR------------TLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRL 271 (811)
Q Consensus 211 IwDl~~~~~l~~~~~~~~~I~sl~fspd-----g~------------~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~~~i 271 (811)
|.+-.+++.-..+-+|..++.++.|+|. .+ .+|+|+.| +|.||.....+.+-++ ++-...+
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 9998888888889999999999999982 11 45677766 6999998776665443 3444556
Q ss_pred eEeee-cCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 272 SDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 272 ~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
.++.+ +||..|.+++.||+|.+..++-+++..
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 67766 799999999999999999998877664
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.8e-26 Score=227.38 Aligned_cols=249 Identities=20% Similarity=0.401 Sum_probs=227.6
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (811)
|-+|.+|.+.|+...+.. +....+++..|-+-+|||.-+|..++.+. |..-|..++|+.|.++|++|+.+..++|||+
T Consensus 52 igtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred EEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 678999999999999987 66778999999999999999999999887 8899999999999999999999999999999
Q ss_pred CCCe-EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 89 EEAK-IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 89 ~t~~-~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
+..+ +...+.+|.+.|..+.|....+.|++.+.|++|++||.+++..++++. ...+|+++.++++|++|.++ ..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCcee
Confidence 8654 567788999999999999989999999999999999999999999998 57789999999999977665 67889
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEEE
Q 003556 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs 246 (811)
++||..+...+..++ ....|.+..++|+...+++|++|..++.||..+++.+..+ .+|.++|.|+.|+|||...++|+
T Consensus 208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 999999999988887 4678999999999999999999999999999999999886 89999999999999999999999
Q ss_pred CC-CEEEEEecCCceee
Q 003556 247 HE-SLKVFSWEPIRCHD 262 (811)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~ 262 (811)
.| +|++|...+.+...
T Consensus 287 EDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKTYG 303 (334)
T ss_pred CCceEEEEEecCCCchh
Confidence 88 59999998776543
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=227.21 Aligned_cols=290 Identities=18% Similarity=0.356 Sum_probs=235.1
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC------C------------CceEEEecCCCCCeEEEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------K------------PNAILSLSGHTSGIDSVS 66 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~------t------------~~~~~~l~~h~~~V~~l~ 66 (811)
..+....+..|++++.|.+|+| +|.+++||+.|..|+|.|++ . .-.+.++..|...|+++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3466677889999999999999 77899999999999999985 1 135677888999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ec
Q 003556 67 FDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KG 141 (811)
Q Consensus 67 fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~---~~ 141 (811)
|+|....|++|+.|++|++||+......+.++ ....+|.++.|+|.|++|++|.....+++||+.+.+|...- ..
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 99999999999999999999997654333332 24568999999999999999999999999999998886554 35
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (811)
Q Consensus 142 h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 219 (811)
|.+.|+++.+++.|+..++|+.||.|++||--.++++.++.. |. ..|++..|..+|+++++.+.|..+++|.+.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 889999999999999999999999999999999999988863 44 4699999999999999999999999999999999
Q ss_pred EEEeCCCCC-----CeeEEEEecCCCEEEEEECCCEEE--EEecCCceeeeeecccc-ceeE-eeecCCCEEEEEECCCe
Q 003556 220 IGSAGPETS-----GVRCLTFNPDGRTLLCGLHESLKV--FSWEPIRCHDAVDVGWS-RLSD-LNVHEGKLLGCSYNQSC 290 (811)
Q Consensus 220 l~~~~~~~~-----~I~sl~fspdg~~Lasgs~d~I~V--wd~~~~~~~~~~~~~~~-~i~~-l~~~dg~lLasg~~Dg~ 290 (811)
+..+.+.+. --+...|+....|++.-.+.+..+ ||-.+......+..+.. .+.. ...+.+..+.+|+.|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 988765421 124556888888888765554444 44444444444444332 2222 23367889999999999
Q ss_pred EEEEE
Q 003556 291 VGVWV 295 (811)
Q Consensus 291 V~IWd 295 (811)
.++|-
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99995
No 72
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.9e-27 Score=258.38 Aligned_cols=353 Identities=28% Similarity=0.450 Sum_probs=290.2
Q ss_pred CCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003556 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl 107 (811)
+..+++.+-.+-.+++|+... +..|...|.|+..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 444555666667788888643 45688899999987788999999999999999998888888899999999999
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q 003556 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187 (811)
Q Consensus 108 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~ 187 (811)
.|++...+|++|+.+|+|++||++..+.++++.+|...+..+.|+|.+.+++.|+.|+.+++||++...+.+.+.+|...
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeec
Q 003556 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 266 (811)
Q Consensus 188 V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~ 266 (811)
+.++.|+|+|++++.|++|.+++|||+..|+.+..|..|.+.+..+.|+|..-+++.|+.+ .+++|++++...+.....
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999889988766 699999998766655544
Q ss_pred cccceeEeee-cCCCEEEEEECCCeEE------EEEecCCCceeeeeccceeeccccccccCCCCCccccccCccccccC
Q 003556 267 GWSRLSDLNV-HEGKLLGCSYNQSCVG------VWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLG 339 (811)
Q Consensus 267 ~~~~i~~l~~-~dg~lLasg~~Dg~V~------IWdvd~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (811)
....+.+..+ ++++.+.+|-.+..-- -+.....+.+|...+...+.+.+.+.......+...+++...+...+
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~ 316 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLS 316 (825)
T ss_pred ccCCceeeeecCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCcccccccccccccc
Confidence 4555555555 6788888776553221 12223344566666666666777666666555566666677777777
Q ss_pred CccccCCCccccccccccCccccc-CCCCcccccccccccccccCCCCc
Q 003556 340 KLSVSQNSDPLVKETKSLGRLSVS-QNSDPLLKETKTLGRLSVSQNSEP 387 (811)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 387 (811)
++...... .++.++..+|+++++ |..|+..+++++.+.++..++++.
T Consensus 317 kl~~~~~~-p~l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~ 364 (825)
T KOG0267|consen 317 KLEDSTYV-PLLKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDR 364 (825)
T ss_pred cccccccc-ceeccccchhccccccccCCCcccCCCCcccccccccccc
Confidence 77777666 678888889999987 888888888877666666666544
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2e-26 Score=246.85 Aligned_cols=258 Identities=24% Similarity=0.449 Sum_probs=220.9
Q ss_pred ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEE
Q 003556 50 NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~I 127 (811)
+.++.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003556 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (811)
Q Consensus 128 wDl~~~~~i~~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D 206 (811)
||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999997 46678999999988 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCce---eeeeeccc---cceeEeeecC
Q 003556 207 RTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC---HDAVDVGW---SRLSDLNVHE 278 (811)
Q Consensus 207 g~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~---~~~~~~~~---~~i~~l~~~d 278 (811)
+.++||+.+..-++..+ ..+.....++..+|++.++++-+.+ .|.+|.....-. ...+..++ ..+..-+.+|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999987766543 3334456889999999999987655 577777554211 12233333 3344445599
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeecc
Q 003556 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 279 g~lLasg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
|.+|++|..||.+.+||..+.++.-....+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccC
Confidence 999999999999999999998776444333
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.8e-26 Score=224.35 Aligned_cols=240 Identities=25% Similarity=0.427 Sum_probs=208.2
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC-CCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~-t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~ 92 (811)
-.+.+..++|++.....+++++.||.+++||.. ...++..++.|...|.++.|++ .+..+++++.||+|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 456799999999889999999999999999974 3467888999999999999987 45577888999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003556 93 IVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLW 170 (811)
Q Consensus 93 ~v~~l~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~Iw 170 (811)
.+.++.+|...|...+|+| ..+.|++++.||++++||++.......+..|...|.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999 467999999999999999987655556889999999999998 66788999999999999
Q ss_pred ECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEec-CCCEEEEE-
Q 003556 171 DLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNP-DGRTLLCG- 245 (811)
Q Consensus 171 Dl~t~-~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fsp-dg~~Lasg- 245 (811)
|+++- ..+.++.+|.-.|..+.|+|. ..+||+++.|=+++|||.... ..+.+...|..-+..+.|++ ++.+++..
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99874 467888899999999999996 568999999999999999854 45566778888899999987 45567754
Q ss_pred ECCCEEEEE
Q 003556 246 LHESLKVFS 254 (811)
Q Consensus 246 s~d~I~Vwd 254 (811)
-++.+.||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 455688886
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.7e-26 Score=236.88 Aligned_cols=283 Identities=17% Similarity=0.350 Sum_probs=237.4
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
-.+.||.+.|.|++=+|..-..+++|+.||.|+|||+.+.+++..+..|.+.|..|++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 457899999999999996557899999999999999999999999999999999999987 567788899999999987
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVK 168 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~ 168 (811)
- ..++++.+ ...+..+.-+..+..|++++. .|-|||.+...++..+......|.++.|+|-. ..|++++.|+.|.
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred C-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 5 46666653 455677777777788998875 48999999999999998878889999999954 4567777999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
+||++++..++.+. ....-+.++|+|.+..+++|++|..++.||++.. .++....+|.+.|.++.|+|.|+-+++|+.
T Consensus 214 LyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred EEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 99999998888766 3455688999999999999999999999999874 467788999999999999999999999987
Q ss_pred C-CEEEEEecCCceeeeeecc-ccceeEe-eecCCCEEEEEECCCeEEEEEecCC
Q 003556 248 E-SLKVFSWEPIRCHDAVDVG-WSRLSDL-NVHEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~-~~~i~~l-~~~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
| +|+||....+...+++... ...+.++ ...|.+++++|++|+.|++|.....
T Consensus 293 DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 7 7999999877665544221 1222333 3389999999999999999976653
No 76
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6.4e-24 Score=244.89 Aligned_cols=232 Identities=18% Similarity=0.319 Sum_probs=187.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc--------eEEEecCCCCCeEEEEEcCCCCE-EEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--------AILSLSGHTSGIDSVSFDSSEVL-VAAG 77 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 77 (811)
..+..+.+|.+.|.+++|+|+++.+|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 45678999999999999999768899999999999999997542 34567899999999999999875 5688
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE-----EEc
Q 003556 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI-----RFT 152 (811)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si-----~fs 152 (811)
+.||+|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|.+.+.+. .|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998887776 66789999999999999999999999999999999999999998765432 345
Q ss_pred CCCCEEEEEECCC----eEEEEECCC-CeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-C
Q 003556 153 PDGRWVVSGGEDN----TVKLWDLTA-GKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-G 224 (811)
Q Consensus 153 pdg~~L~sgs~Dg----~I~IwDl~t-~~~i~~~~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~ 224 (811)
+++.+|++++.|+ .|+|||++. ++.+..+.. +.+.+......++|.++++|+.|+.|++|++..+.....- .
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence 8889999988774 799999995 555555442 2333444444556899999999999999999876432211 1
Q ss_pred CCCCCeeEEEEecCC
Q 003556 225 PETSGVRCLTFNPDG 239 (811)
Q Consensus 225 ~~~~~I~sl~fspdg 239 (811)
.+..++.+++|.|+.
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 245677888888863
No 77
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.8e-25 Score=244.55 Aligned_cols=247 Identities=24% Similarity=0.455 Sum_probs=224.9
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
..+.++.. +-+.|..|.| +++++++|...|.+.+||+.....+..+.+|.+.|+.++.+||+..+++|+.|.+|++|
T Consensus 405 kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 34444432 3788999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC-----CeEE--------EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003556 87 DLEE-----AKIV--------RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (811)
Q Consensus 87 Dl~t-----~~~v--------~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp 153 (811)
|..- +... +++. ....|.|+.++|||++|+++-.|.++++|-+++.+....+.+|.-||.|+..+|
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 9741 2111 2222 457899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003556 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl 233 (811)
|++.+++|+.|..|++|-+.-|.|-..+-+|...|.++.|.|...++.+++.|+.|+-||-.+++.+..+.+|...|+|+
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEECC-CEEEEEecC
Q 003556 234 TFNPDGRTLLCGLHE-SLKVFSWEP 257 (811)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (811)
+.+|+|.++++++.| +|++|.-..
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999886 799998654
No 78
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=241.74 Aligned_cols=225 Identities=17% Similarity=0.333 Sum_probs=186.3
Q ss_pred EECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe--------EEEEEcCCCCCeE
Q 003556 35 GGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCI 105 (811)
Q Consensus 35 gs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~--------~v~~l~~h~~~I~ 105 (811)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 7899999999999999997542 3456788999999
Q ss_pred EEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003556 106 SVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (811)
Q Consensus 106 sl~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (811)
+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999875 5789999999999999998887776 6678999999999999999999999999999999999999999
Q ss_pred CCCeEE-----EEEeCCCCEEEEEECCC----eEEEEECCC-CeEEEEeC--CCCCCeeEEEEecCCCEEEEEECC-CEE
Q 003556 185 EGQIQC-----IDFHPHEFLLATGSADR----TVKFWDLET-FELIGSAG--PETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (811)
Q Consensus 185 ~~~V~s-----v~fspdg~~Lasgs~Dg----~I~IwDl~~-~~~l~~~~--~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (811)
.+.+.+ ..|++++.+|++++.|+ .|+|||++. .+++.... .+.+.+......++|.++++|..| .|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876543 34558888999988774 799999995 55555443 333334444445668888888666 699
Q ss_pred EEEecCCce
Q 003556 252 VFSWEPIRC 260 (811)
Q Consensus 252 Vwd~~~~~~ 260 (811)
+|++.....
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999976543
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-24 Score=242.09 Aligned_cols=239 Identities=23% Similarity=0.447 Sum_probs=216.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (811)
...|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.+|.|..+|+...+..
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 88999999999 778999999999999999999999999998 99999999998 678999999999999999887655
Q ss_pred EE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE--CCCeEEEE
Q 003556 95 RT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG--EDNTVKLW 170 (811)
Q Consensus 95 ~~-l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs--~Dg~I~Iw 170 (811)
.. +.+|...|+.+.|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+|+ .|+.|++|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 44 889999999999999999999999999999999988899999999999999999999 556788765 68999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE--ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG--SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg--s~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
|..+++.+..+. ....|+.+.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 999999998877 57889999999998766664 457789999999999999999999999999999999999988655
Q ss_pred -CEEEEEecCC
Q 003556 249 -SLKVFSWEPI 258 (811)
Q Consensus 249 -~I~Vwd~~~~ 258 (811)
++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 7999987653
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=234.19 Aligned_cols=284 Identities=21% Similarity=0.321 Sum_probs=215.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC----ceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~----~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
.+|++|+..|.++++.| .|-.|++|+.|.+|++||+..- .....+. .....|..+.|++.|..|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 46889999999999999 5667999999999999998532 2233333 3456899999999999999998899999
Q ss_pred EEECCCCeEEEE------------EcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe-EEEEEe-----cCCCC
Q 003556 85 LWDLEEAKIVRT------------LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYK-----GHTRG 145 (811)
Q Consensus 85 IWDl~t~~~v~~------------l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~-~i~~~~-----~h~~~ 145 (811)
|+|-...+.... .+||...++|.+|+|..+ .|++++.||+++|||+.+.+ ....++ +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999654443332 247999999999999765 79999999999999998643 233333 23346
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-E
Q 003556 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFE-L 219 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~--~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~ 219 (811)
++.++|++||++|++|+.||.|.+||...... ...-..|.. .|+|+.|+++|++|++-+.|+++++||++..+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999999764322 222235655 89999999999999999999999999999864 4
Q ss_pred EEEeCCC--CCCeeEEEEecCCCEEEEEEC-------CCEEEEEecCCceeeeeeccccceeEeeecC-CCEEEEEECCC
Q 003556 220 IGSAGPE--TSGVRCLTFNPDGRTLLCGLH-------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGCSYNQS 289 (811)
Q Consensus 220 l~~~~~~--~~~I~sl~fspdg~~Lasgs~-------d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~d-g~lLasg~~Dg 289 (811)
+....+. ..+-+.++|||+.++|++|.. +.+.+|+-.+......+......+..+.||. =+.+.+|+.||
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 4444332 234578899999999998853 1266666666555555555544444455543 46777778889
Q ss_pred eEEEE
Q 003556 290 CVGVW 294 (811)
Q Consensus 290 ~V~IW 294 (811)
.++|+
T Consensus 480 ~~~vy 484 (641)
T KOG0772|consen 480 TAHVY 484 (641)
T ss_pred ceEEE
Confidence 88887
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.8e-25 Score=234.33 Aligned_cols=238 Identities=25% Similarity=0.492 Sum_probs=209.5
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t 90 (811)
|.-....|.++.|-. +|++|++|+..|.|+|||..+...+..+.+|+.+|..+.|+|+++ .+++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 444567899999987 789999999999999999777678888999999999999999655 677888899999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~-~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~ 168 (811)
......+.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+..+. |..+|..+.|-|.|..+++++ ...++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 998778999999999999999766 7999999999999999987 5666665 999999999999999999885 67899
Q ss_pred EEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 169 LWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 169 IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
+||+.+| +.+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.++.+.- .++|.+++.+|+++.+++|..
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecc
Confidence 9999955 45555555999999999999999999999999999999999999988865 488999999999999999988
Q ss_pred CCEEEE
Q 003556 248 ESLKVF 253 (811)
Q Consensus 248 d~I~Vw 253 (811)
+++-.+
T Consensus 300 nGlv~~ 305 (487)
T KOG0310|consen 300 NGLVSI 305 (487)
T ss_pred cceeee
Confidence 874443
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.9e-24 Score=224.20 Aligned_cols=250 Identities=26% Similarity=0.481 Sum_probs=214.7
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCC--CcEEEEEECCCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCEEEEE
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAAG 77 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~--~~lLatgs~Dg~I~VWdl~t~~~----~~~l~~h~~~V~~l~fspdg~~Lasg 77 (811)
.+...+.++.||.++|..++|.-.+ ...|++++.|.++++|.++.+.. +..-.||...|.++...+++..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 4456778899999999988886533 23699999999999999876643 33345999999999999999999999
Q ss_pred ECCCeEEEEECC-------------------------CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC
Q 003556 78 AASGTIKLWDLE-------------------------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132 (811)
Q Consensus 78 s~DG~I~IWDl~-------------------------t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~ 132 (811)
+.|..|+||+.. +..++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 999999999932 1235667889999999999997 77899999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCeEEEEEeCC-CCEEEEEECCCe
Q 003556 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPH-EFLLATGSADRT 208 (811)
Q Consensus 133 ~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~ 208 (811)
++++.++.+ ...+.|+.++|..++|++|+.|..|++||.+++. ..+.|.+|.+.|.++.|+|. ...|++|+.|++
T Consensus 291 g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 291 GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 999988884 5679999999999999999999999999999763 56678899999999999995 668999999999
Q ss_pred EEEEECCCCe-EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEec
Q 003556 209 VKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 209 I~IwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
+++||+++.+ +++.+.+|...|.++.|.. +.+|++|+.| .|+|+...
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9999999987 9999999999999999984 5577777655 68887654
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=219.55 Aligned_cols=291 Identities=20% Similarity=0.361 Sum_probs=244.8
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
..+++|.||.+.|+.++... ...++.+++.|.+-+||.++++.|+..+.||.+.|++|+|++.+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34568899999999999886 67799999999999999999999999999999999999999999999999999999999
Q ss_pred EC------CC------------------------------C----eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE
Q 003556 87 DL------EE------------------------------A----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126 (811)
Q Consensus 87 Dl------~t------------------------------~----~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 126 (811)
.. .. + -++..+.+|...|.+..|-..|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 61 00 0 13456789999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003556 127 IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (811)
Q Consensus 127 IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~ 205 (811)
+||++++..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|.+|...|+++.|.-+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999999999853 4567789999999999998765 6899999
Q ss_pred CCeEEEEECCCCe-EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeee----eccccceeEeeecCC
Q 003556 206 DRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNVHEG 279 (811)
Q Consensus 206 Dg~I~IwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~~~~i~~l~~~dg 279 (811)
|.+|++||+++.. ++.++.. ..+++.++.+..+..|+.-.++ .+++||++..+..... ..+..-+.+..+.+.
T Consensus 377 DrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999998754 5666654 4778999999988899988777 5999999876654332 223333445555332
Q ss_pred ---CEEEEEECCCeEEEEEecCCC
Q 003556 280 ---KLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 280 ---~lLasg~~Dg~V~IWdvd~~~ 300 (811)
.-|.+++-|..+.-|.+.+..
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CcccccccccccceeeeeEecccC
Confidence 344566678899999887643
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.2e-25 Score=225.30 Aligned_cols=255 Identities=22% Similarity=0.414 Sum_probs=215.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--------cCCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003556 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL--------TGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (811)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l--------~~h~~~I~sl~fspdg~~Lasgs~Dg~I~Iw 128 (811)
+..+.+.|..|+|||+||++|+.||.|.+||..+|+..+.+ ..+...|.|++|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45567899999999999999999999999999999865544 3477899999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 129 DIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (811)
Q Consensus 129 Dl~~~~~i~~~~-~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg 207 (811)
.+++|.|++.|. .|...|+|+.|+.|+..+++++.|.++++.-+..|+++.+|++|.+.|+...|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999997 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEeCCC--CCCeeEEEEecCCC-EEE-EEECCCEEEEEecCCceeeeeec----cccceeEeeecCC
Q 003556 208 TVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR-TLL-CGLHESLKVFSWEPIRCHDAVDV----GWSRLSDLNVHEG 279 (811)
Q Consensus 208 ~I~IwDl~~~~~l~~~~~~--~~~I~sl~fspdg~-~La-sgs~d~I~Vwd~~~~~~~~~~~~----~~~~i~~l~~~dg 279 (811)
+|++|+.++.+++.++++. ..+|+++-.-|.+. .++ +.-.+++.|.++. +.....+.. +...+.++..+.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 9999999999999888654 45678887777543 333 3334456665553 233333322 2334566667899
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeeccceee
Q 003556 280 KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRV 312 (811)
Q Consensus 280 ~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~~ 312 (811)
.++.|.++|+.++.|.+..+.+..+..-+...+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 999999999999999999999998776655443
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.4e-24 Score=236.16 Aligned_cols=281 Identities=23% Similarity=0.388 Sum_probs=241.4
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceE--EEecCCCCCeEE-EEEcC-CCCEEEEEECCCeEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLSGHTSGIDS-VSFDS-SEVLVAAGAASGTIKL 85 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~--~~l~~h~~~V~~-l~fsp-dg~~Lasgs~DG~I~I 85 (811)
.++.+|+..|..+++.+ +..++++++||++++|+-...+.+ ..+.+|.+.|.+ +++.+ ++-.+++|+.|+.|.+
T Consensus 8 ~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 57899999999999875 446999999999999997544443 356778888887 88875 4446899999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
|.+....++.++++|...|+++....++. +++||.|.++++|-. +++...+.+|...|+++.+-|++ .+++|+.|.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 99999999999999999999999887776 999999999999975 56677799999999999999987 799999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEE
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasg 245 (811)
.|++|.- ++++.+|.+|...|..+++-+++ .+++++.||.|++|++ +++.+....+|...+++++...++..++++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 9999975 78999999999999999998875 4778889999999999 788999999999999999966666677766
Q ss_pred ECC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCce
Q 003556 246 LHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 246 s~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
++| .++||.-+ .|.+.+......+.+...-.+.-+++|+.||.||||..+-.+..
T Consensus 238 gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 238 GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccC
Confidence 555 69999877 88888888877777777766666788999999999998866655
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=3.8e-24 Score=228.55 Aligned_cols=252 Identities=27% Similarity=0.492 Sum_probs=214.3
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEcCCCC-E
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFDSSEV-L 73 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~----------~~~~~l~~h~~~V~~l~fspdg~-~ 73 (811)
..+++....-|.+.|+.+.+-|++..++++++..+.|+|||..+. ..-..+.+|...-+.++|++... .
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence 356677777899999999999999999999999999999998432 22337889998788899988544 7
Q ss_pred EEEEECCCeEEEEECCCCe-------EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECC--CCeEEEEEecCC
Q 003556 74 VAAGAASGTIKLWDLEEAK-------IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR--KKGCIHTYKGHT 143 (811)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~-------~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~--~~~~i~~~~~h~ 143 (811)
|++++.|++|++||+.... ....+.+|...|..++|++.. ..|++++.|+.+.|||++ +.++....++|.
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 8899999999999996432 356778999999999999965 478999999999999999 566777788999
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC---
Q 003556 144 RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF--- 217 (811)
Q Consensus 144 ~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~--- 217 (811)
+.|.|++|+| ++..||+|+.|++|.+||+|+ .+.+..+.+|...|.++.|+|+ ...||+++.|+.+.+||+...
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999999999 566788999999999999997 4578889999999999999996 679999999999999998642
Q ss_pred -----------eEEEEeCCCCCCeeEEEEecCCCEEEEE-ECC-CEEEEEec
Q 003556 218 -----------ELIGSAGPETSGVRCLTFNPDGRTLLCG-LHE-SLKVFSWE 256 (811)
Q Consensus 218 -----------~~l~~~~~~~~~I~sl~fspdg~~Lasg-s~d-~I~Vwd~~ 256 (811)
++++.-.+|...|..+.|+|+..+++++ .++ .+.||.+.
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 3457778999999999999999887755 344 59999886
No 87
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-24 Score=214.19 Aligned_cols=250 Identities=21% Similarity=0.408 Sum_probs=213.2
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----C
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----S 80 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----D 80 (811)
.-.+-++.||.+.|+|++... ..+.++||+.|.++++||+.+|+++..++ ...+|..+.|+.+|++++.... .
T Consensus 42 GerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred CceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence 346788999999999999998 66789999999999999999999999988 4679999999999998887654 4
Q ss_pred CeEEEEECC-------CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEc
Q 003556 81 GTIKLWDLE-------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFT 152 (811)
Q Consensus 81 G~I~IWDl~-------t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~~~~h~~~I~si~fs 152 (811)
+.|.++|++ ..+++..+..+.+.++.+-|.|-+++|++|..||.|.+||++++. .+...+.|...|+.++++
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS 199 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence 789999997 445677888889999999999999999999999999999999974 556667899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe--E------------EEEECCCCe
Q 003556 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT--V------------KFWDLETFE 218 (811)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~--I------------~IwDl~~~~ 218 (811)
+|..++++++.|.+-++||.++-++++++. ...+|++.+++|....++.|+.... | ++|++-..+
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred CCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 999999999999999999999999999998 4789999999998777776654322 2 222222234
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecCC
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPI 258 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~ 258 (811)
.+...++|-++|++++|+|+|+..++|+.++ +++..++..
T Consensus 279 EigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 5667789999999999999999999998885 888877653
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=8.8e-24 Score=223.55 Aligned_cols=247 Identities=20% Similarity=0.404 Sum_probs=219.7
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
-+..|+||...|+.+.|+| ....+++++.|..|+||......+......|..+|+.+..+|.|.||++++.||+..+.|
T Consensus 253 ~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 4568999999999999999 667899999999999999988888888899999999999999999999999999999999
Q ss_pred CCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 88 LEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 88 l~t~~~v~~l~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
++++..+..... ..-.+++.+|||||-.|.+|..||.|+|||+..+..+..|.+|.++|..++|+.+|.||+++++|+
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 999998777653 234589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEecCCCEE
Q 003556 166 TVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTL 242 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl--~~~~~l~~~~~~~~~I~sl~fspdg~~L 242 (811)
.|++||+|.-+...++... ...+.++.|.+.|.+|+.++.|=+|++++- ..+..+..+..|.+..+++.|....+++
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYL 491 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEE
Confidence 9999999988877777643 346999999999999999988777777763 3577888888888889999999999999
Q ss_pred EEEECC-CEEEEEe
Q 003556 243 LCGLHE-SLKVFSW 255 (811)
Q Consensus 243 asgs~d-~I~Vwd~ 255 (811)
++++.+ .+++|.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 988777 4666643
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=213.41 Aligned_cols=263 Identities=19% Similarity=0.376 Sum_probs=221.1
Q ss_pred EEEEECCCeEEEEECCCC------------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 32 LVTGGEDHKVNLWAIGKP------------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 32 Latgs~Dg~I~VWdl~t~------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
|++|+....|.-+++... ..+..+..|.++|++++. ++.++++|+.|-+|+|||+.....+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 666777766666665211 235567789999999998 588999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCC--EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 100 HRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (811)
Q Consensus 100 h~~~I~sl~fspdg~--~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (811)
|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.|+..++.+.|+.+++||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998665 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEec
Q 003556 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 178 i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
-....- ...-+.+.|+|.|.+++.+..+ .|-+|.+.+......+... ..+.++.|- ++.+|++|.++ .|.+||-+
T Consensus 162 a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 162 AFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 666653 2333559999999999888866 5999999887766555433 446777776 45567766666 69999999
Q ss_pred CCceeeeeeccccceeEeee---cCCCEEEEEECCCeEEEEEecCCC
Q 003556 257 PIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 257 ~~~~~~~~~~~~~~i~~l~~---~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
...+...+..+..++.++.+ +++.+|++++.||.|+|||+++..
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 98898889899888888875 566899999999999999999873
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-24 Score=239.83 Aligned_cols=283 Identities=19% Similarity=0.382 Sum_probs=233.7
Q ss_pred cCCCCEE---EEEEeeCCCcEEEEEECCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 14 AHSSTVN---CLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 14 ~H~~~V~---~lafsp~~~~lLatgs~Dg~I~VWdl~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
.|...|. .+..+..++++|+|||.||.|++|++.... .+..++.|.+.|++++...+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555666 566677788999999999999999984322 4677889999999999999999999999999999
Q ss_pred EEECCCC--eEEEEEcCCCCCeEEEEE-eCCCCEEEEEECCCcEEEEECCCCe--EEEE--------Ee-cCCCCeEEEE
Q 003556 85 LWDLEEA--KIVRTLTGHRSNCISVDF-HPFGEFFASGSLDTNLKIWDIRKKG--CIHT--------YK-GHTRGVNAIR 150 (811)
Q Consensus 85 IWDl~t~--~~v~~l~~h~~~I~sl~f-spdg~~Lasgs~Dg~I~IwDl~~~~--~i~~--------~~-~h~~~I~si~ 150 (811)
+|+...+ -+..++..|.+.|.|+++ -++...+|+|+.|+.|.+||+.++. .+.+ +. ++...|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 577888899999999999 7778899999999999999999772 2222 22 6888999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe
Q 003556 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (811)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I 230 (811)
..+.|..|++|+..+.|++||.++++.+..+.+|...|.++..++||..+++++.||+|++||+...+++.++..|...|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEECCC-EEEEEecCC-ceeeeeeccccceeEeee--cCCCEEEEEECCCeEEEEEecC
Q 003556 231 RCLTFNPDGRTLLCGLHES-LKVFSWEPI-RCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~-I~Vwd~~~~-~~~~~~~~~~~~i~~l~~--~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
+++..+|+=..+++|+.++ |..=++... ++..++ -.-.++..+.. ++..+ -++..|+.|.-|....
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEP 328 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCc-eeeeccccceecCCcc
Confidence 9999999999999987664 555555442 222222 11222323332 23444 6677889999996654
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-23 Score=212.53 Aligned_cols=245 Identities=17% Similarity=0.366 Sum_probs=210.5
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIK 84 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~ 84 (811)
..+..|.+|.++|+|++.+ +.++|+|+.|.+|+|||+.+...+..+..|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3467889999999999994 68999999999999999999999999999999999999988765 889999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
+|+......+.++++|.+.|+.++.+|.|++-++.+.|+.+++||+-+|+.-....- ....+.+.|+|.|.+++.++.+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999998876555542 2334559999999999888754
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE--ecCCCEE
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF--NPDGRTL 242 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~f--spdg~~L 242 (811)
.|-+|.+.+......+. ....+.|+.|. ++..|++|..|+.|.+||.....+...+.+|...|.++.+ .|++.+|
T Consensus 190 -~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred -EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 57889888776665554 23557777774 5668999999999999999999999999999999999984 4568888
Q ss_pred EEEECC-CEEEEEecCC
Q 003556 243 LCGLHE-SLKVFSWEPI 258 (811)
Q Consensus 243 asgs~d-~I~Vwd~~~~ 258 (811)
++++.+ .|+||+++..
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 877555 5999998765
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.5e-24 Score=223.10 Aligned_cols=262 Identities=19% Similarity=0.311 Sum_probs=216.2
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE
Q 003556 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 126 (811)
+..+.+..|++.|+-+.|+++|+|||+++.|.+..+|++... +...++.+|..+|..+.|+||.+|+++++.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 344567789999999999999999999999999999998543 45788999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEE
Q 003556 127 IWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGS 204 (811)
Q Consensus 127 IwDl~~~~~i~~~~~-h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-~~~V~sv~fspdg~~Lasgs 204 (811)
+||+.+|.+...+.. +...+.+++|.|||..+++|+.|+.|..||+. |.....+++- ...|.+++..+||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999999888763 45789999999999999999999999999987 4445555543 35699999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccc---cce-eEeeecCC
Q 003556 205 ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW---SRL-SDLNVHEG 279 (811)
Q Consensus 205 ~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~---~~i-~~l~~~dg 279 (811)
.|..|++|+.++......+. ...+|++++.|.||+++++.-.+ .+++||++..+....+..+- -.+ .++-..+.
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 99999999998766554443 45789999999999999988655 79999999665544432221 122 23334677
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeeccceeec
Q 003556 280 KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVN 313 (811)
Q Consensus 280 ~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~~n 313 (811)
.++++|++|+.|+||+-..++......++.-.+|
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 9999999999999999999988876666664443
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.7e-22 Score=195.37 Aligned_cols=290 Identities=19% Similarity=0.322 Sum_probs=227.3
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC--------------ce-EEEecCCCCCeEEEEEcCC
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--------------NA-ILSLSGHTSGIDSVSFDSS 70 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~--------------~~-~~~l~~h~~~V~~l~fspd 70 (811)
.+........+..|.+++|+| .+.+.++|+...+++|.....- .. ...-+.|.+.|+|.+|+|+
T Consensus 22 ~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 344444555677899999999 6678899999999998754210 11 1233468899999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeE-----EEEEcCCCCCeEEEEEeCC----CCEEEEEE-CCCcEEEEECCCCeEEEEEe
Q 003556 71 EVLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPF----GEFFASGS-LDTNLKIWDIRKKGCIHTYK 140 (811)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~-----v~~l~~h~~~I~sl~fspd----g~~Lasgs-~Dg~I~IwDl~~~~~i~~~~ 140 (811)
|.+|++|+.|.+|++.-++...+ -..+..|.+.|..++|..+ +..|++++ .|..|++-|...++..+.+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987654322 2356679999999999754 34666654 47789999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--C-----CCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003556 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--H-----EGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (811)
Q Consensus 141 ~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h-----~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 213 (811)
+|.+.|.++- +=+|-.+++|+.|.+|++||++-..++..+.. | ...|.+++..|.|++|++|..|....+||
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 9999998763 22578899999999999999998888777642 2 25799999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceee----eeeccccceeEeeec-CCCEEEEEEC
Q 003556 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD----AVDVGWSRLSDLNVH-EGKLLGCSYN 287 (811)
Q Consensus 214 l~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~----~~~~~~~~i~~l~~~-dg~lLasg~~ 287 (811)
++.+..++.+.+|...|+++.|+|...|+++++.+ .|++-|+...-.+. ++.-+-.....+.+| ..--+++++.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC
Confidence 99999999999999999999999999999999877 69998886543221 222223333344444 3456678889
Q ss_pred CCeEEEEEec
Q 003556 288 QSCVGVWVVD 297 (811)
Q Consensus 288 Dg~V~IWdvd 297 (811)
|.++.+|.+.
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999764
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=212.44 Aligned_cols=230 Identities=22% Similarity=0.409 Sum_probs=195.6
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-ceE-EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAI-LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (811)
-.+.|.+++|+|....++++|+-||+|++|+++.. ..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 45789999999977888889999999999999763 322 3445689999999999999999999999999999999995
Q ss_pred EEEEEcCCCCCeEEEEEeCCCC--EEEEEECCCcEEEEECCCCeEEEEEe------------------------------
Q 003556 93 IVRTLTGHRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYK------------------------------ 140 (811)
Q Consensus 93 ~v~~l~~h~~~I~sl~fspdg~--~Lasgs~Dg~I~IwDl~~~~~i~~~~------------------------------ 140 (811)
+..+..|..+|.++.|-+... .|++|+.|.+|+.||.+...++.++.
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 456667999999999988665 79999999999999998766554432
Q ss_pred -------cC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCC---------CeEEEEEeCCCC
Q 003556 141 -------GH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEG---------QIQCIDFHPHEF 198 (811)
Q Consensus 141 -------~h----~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~---------~V~sv~fspdg~ 198 (811)
.+ +..++|++..+|....+.|+-+|.+.|..+..+ +.-..|++|.. .|++++|||...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 11 234788888888888899999999999888776 55566777762 478899999988
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEE
Q 003556 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 199 ~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasg 245 (811)
.|++++.||++.+||-.....+.....+..+|++.+|+.+|.+++.+
T Consensus 265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999999888888999999999999999999999866
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.1e-23 Score=242.45 Aligned_cols=252 Identities=21% Similarity=0.424 Sum_probs=218.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC------------------CceEEEecCCCCCeEEEEEcC
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------------------PNAILSLSGHTSGIDSVSFDS 69 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t------------------~~~~~~l~~h~~~V~~l~fsp 69 (811)
.+-+...|.+.|+|+.|+| ++.+||+|++|+.|.||.... -+++..+.+|...|.+++|+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 3456778999999999999 788999999999999998752 136778889999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC------
Q 003556 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT------ 143 (811)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~------ 143 (811)
++.+|++++.|++|.+||..+.+.+..+.+|...|..+.|.|-|+|||+-+.|++|++|++.+..+.+.+..+-
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988877777776443
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-----CC------------EEEE
Q 003556 144 RGVNAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-----EF------------LLAT 202 (811)
Q Consensus 144 ~~I~si~fspdg~~L~sgs~----Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspd-----g~------------~Las 202 (811)
..+..+.|+|||.+|++... ...+.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+|+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 34788999999999998642 346899998888888899999999999999981 11 6889
Q ss_pred EECCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCce
Q 003556 203 GSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~l~~~~-~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (811)
|+.|++|.||.....+++..+. -....|.+++|+|||..|++++.| ++.++.++....
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 9999999999998888877653 346789999999999998877666 699999986543
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.5e-24 Score=227.71 Aligned_cols=281 Identities=24% Similarity=0.350 Sum_probs=230.1
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---ceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
..+|..-|.++.++. ..+.++||+. |.|+|||+... ..+..+.. ....|..+...|||+.|++|+.-.++.||
T Consensus 415 tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 347888888889987 6778999987 66999999543 33444443 34689999999999999999999999999
Q ss_pred ECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 87 DLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 87 Dl~t~~--~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
|+.... +...+....-.+.+++.+||.+..+++..||.|.|||+++...++.|++|...+.||.+++||..|.+|+-|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 997654 334444445678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEE
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (811)
.+|+.||+++++.+.+.. ....|.++.++|++.+|++|-+++.+.+...... ..+.+..|.+.|.++.|.+-|+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeee
Confidence 999999999998877665 4688999999999999999999999999887643 44567778999999999999999995
Q ss_pred E-ECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEe
Q 003556 245 G-LHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 245 g-s~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdv 296 (811)
. .++-+..|...-+..+....-..+.+.+-...|++++++|+.|..-.||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5 555688887665544333333333344444478999999999998888865
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.1e-23 Score=207.40 Aligned_cols=236 Identities=17% Similarity=0.280 Sum_probs=214.2
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
....+|.+.|-.++|+|....+|++++.|.+|++||+..+++...+....+.| .+.|+|+|.++++++.|..|.+.|..
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEec
Confidence 35678999999999999999999999999999999999999999887655554 58899999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
+.+.....+ ....+..++|+-++++|+.....|.|.|......+++..++.|.....||.|+|+|++|++|+.|..+.+
T Consensus 137 ~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 137 TYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL 215 (313)
T ss_pred ccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeec
Confidence 888777665 4556778899988887777777799999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
||+..--+++.+.-+..+|..+.|+.+|++||+|++|..|-|=++++|..+..+.. .++...++|+|...+|+.++++
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec-cCCceeEEecCCCceeeEEecC
Confidence 99999999999999999999999999999999999999999999999999988864 5778999999999999977665
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.8e-21 Score=207.24 Aligned_cols=267 Identities=17% Similarity=0.207 Sum_probs=206.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003556 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~ 108 (811)
.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 578899999999999999999888887654 46789999999876 5667789999999999988877765543 56789
Q ss_pred EeCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEecCCC
Q 003556 109 FHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN-TVKLWDLTAGKLLHDFKCHEG 186 (811)
Q Consensus 109 fspdg~~Lasg-s~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg-~I~IwDl~t~~~i~~~~~h~~ 186 (811)
|+|+++.++++ +.++.|++||+.+.+.+..+.. ...+.+++|+|+|.+++++..++ .+.+||..+++....+.. ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 99999977654 5689999999999888877763 34568899999999999988775 567889998877665542 34
Q ss_pred CeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCCCC-------CCeeEEEEecCCCEEEEE--ECCCEEEEEec
Q 003556 187 QIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGPET-------SGVRCLTFNPDGRTLLCG--LHESLKVFSWE 256 (811)
Q Consensus 187 ~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~l~~~~~~~-------~~I~sl~fspdg~~Lasg--s~d~I~Vwd~~ 256 (811)
.+.++.|+|++.+|++++ .++.|++||+++++.+..+..+. .....++|+|+|++++++ .++.+.+|+..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 567899999999886554 68999999999988776553221 123568899999987654 34569999998
Q ss_pred CCceeeeeeccccceeEeee-cCCCEEEEE-ECCCeEEEEEecCCCc
Q 003556 257 PIRCHDAVDVGWSRLSDLNV-HEGKLLGCS-YNQSCVGVWVVDISRI 301 (811)
Q Consensus 257 ~~~~~~~~~~~~~~i~~l~~-~dg~lLasg-~~Dg~V~IWdvd~~~~ 301 (811)
..+....+..+. .+..+.+ ++|++|+++ ..++.|.+||++..+.
T Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 238 TYEVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCcEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 776655443332 3444544 688888876 5689999999999885
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.3e-22 Score=203.05 Aligned_cols=254 Identities=18% Similarity=0.310 Sum_probs=210.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEE
Q 003556 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWD 129 (811)
Q Consensus 52 ~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~--Dg~I~IwD 129 (811)
.+.+......|.++.|+++|.++++++.|.+|++||..+++.++++..++-.+..++|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3445556789999999999999999999999999999999999999988889999999887777777776 88999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q 003556 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209 (811)
Q Consensus 130 l~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I 209 (811)
+.+.+.++.|.+|...|..++.+|-+..+++++.|++|++||++..++...+.... -..++|.|.|-++|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999999999999999999999999999999888877776433 3457899999999999988899
Q ss_pred EEEECCCCe--EEEEeC---CCCCCeeEEEEecCCCEEEEEECCC-EEEEEecCCceeeeeeccc----cceeEeeecCC
Q 003556 210 KFWDLETFE--LIGSAG---PETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGW----SRLSDLNVHEG 279 (811)
Q Consensus 210 ~IwDl~~~~--~l~~~~---~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~----~~i~~l~~~dg 279 (811)
++||++... +...+. +.....+.|.|+|||++|+.++..+ +.+.|--.+.....+.... .++.....+|+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 999998752 333332 3466789999999999999887775 6777766665544443222 23455666999
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeec
Q 003556 280 KLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (811)
Q Consensus 280 ~lLasg~~Dg~V~IWdvd~~~~~p~~~~ 307 (811)
+++.+|++||+|.+|+++++...-...+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999988776643333
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=221.29 Aligned_cols=242 Identities=25% Similarity=0.426 Sum_probs=211.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
-.+..+.+-.++|+.++|.+ .++.+++++.|+.+++|+++..+...++.+|++.|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34567778888999999999 56678888899999999999999999999999999999998877779999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
|+....+.+++. ....+..|+.+ ...+++|-.|+.|++||++...+......+. .|+++..+++|..|++++.|.+
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 999988887765 34556666665 5678999999999999999999999998765 7999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecC----CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC--CeeEEEEecCCC
Q 003556 167 VKLWDLTAGKLLHDFKCH----EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGR 240 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~h----~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~--~I~sl~fspdg~ 240 (811)
+.++|+++.+....|... ....+.+.|+|++.|+++|+.||.|+||++.++++......... .|++++|+|.|.
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 999999999988887642 23478899999999999999999999999999999888765544 499999999999
Q ss_pred EEEEEECC-CEEEE
Q 003556 241 TLLCGLHE-SLKVF 253 (811)
Q Consensus 241 ~Lasgs~d-~I~Vw 253 (811)
+|++++.+ .+.+|
T Consensus 445 ~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 445 GLLSADKQKAVTLW 458 (459)
T ss_pred hhhcccCCcceEec
Confidence 99988666 46666
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=231.42 Aligned_cols=291 Identities=21% Similarity=0.349 Sum_probs=236.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC--ceEEEecCCCCCeEEEEE-cCCCCEEEEEECCCeEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~--~~~~~l~~h~~~V~~l~f-spdg~~Lasgs~DG~I~I 85 (811)
+..++.|.+.|+.++... +++.|++++.|-+|++|+...+ -+..++..|.+.|.|+++ .++..++|+||-|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 567889999999999987 5667999999999999999776 567788899999999999 788889999999999999
Q ss_pred EECCCCe--EE--------EEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003556 86 WDLEEAK--IV--------RTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (811)
Q Consensus 86 WDl~t~~--~v--------~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd 154 (811)
||++++. .+ ..+. ++...|++++.++.|..|++|+..+.|++||.++++.+..+.+|...|.++..++|
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence 9999772 22 2233 78899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003556 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~ 234 (811)
|..+++++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..=|+++......+.....+|..+.
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998655555555567777777
Q ss_pred EecCCCEEEE-EECCCEEEEEecCCceeee-------------------------eeccccceeEeeecCCCEEEEEECC
Q 003556 235 FNPDGRTLLC-GLHESLKVFSWEPIRCHDA-------------------------VDVGWSRLSDLNVHEGKLLGCSYNQ 288 (811)
Q Consensus 235 fspdg~~Las-gs~d~I~Vwd~~~~~~~~~-------------------------~~~~~~~i~~l~~~dg~lLasg~~D 288 (811)
.+...+-+-+ ..+..|+-|-.++...+.. +..+......-...|.+.+++-...
T Consensus 305 ~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~ 384 (735)
T KOG0308|consen 305 LHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAK 384 (735)
T ss_pred hccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCC
Confidence 7644333333 3344577776544221111 1111111111112456788898999
Q ss_pred CeEEEEEecCCC
Q 003556 289 SCVGVWVVDISR 300 (811)
Q Consensus 289 g~V~IWdvd~~~ 300 (811)
|.+.+||+-.+.
T Consensus 385 gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 385 GNVALWDILACV 396 (735)
T ss_pred CCEEEEEeeeee
Confidence 999999986544
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3e-22 Score=213.84 Aligned_cols=282 Identities=21% Similarity=0.357 Sum_probs=232.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE----E-------------e-cCCCCCeEEEEEcCC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL----S-------------L-SGHTSGIDSVSFDSS 70 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~----~-------------l-~~h~~~V~~l~fspd 70 (811)
+..+..|.-+|.|++++| +..+.++++.+|+|.=|++.+++... . - .+|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 567788999999999999 56679999999999999997765331 0 1 268889999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003556 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (811)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~ 150 (811)
++||++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+.|++|+++....+.++.+|...|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998778899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-C---
Q 003556 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-E--- 226 (811)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~-~--- 226 (811)
...-++.+.+|+.|+++++|++. ......|.++.+.+-|++|-.+ ..+++|+.||.|.+|++.+.++++.... |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccccc
Confidence 99888888888899999999994 3444567788889999999754 5799999999999999999888876421 1
Q ss_pred --------CCCeeEEEEecCCCEEEEEECC-CEEEEEecCCc-e---eeeeeccccceeEee-ecCCCEEE-EEECCCeE
Q 003556 227 --------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-C---HDAVDVGWSRLSDLN-VHEGKLLG-CSYNQSCV 291 (811)
Q Consensus 227 --------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-~---~~~~~~~~~~i~~l~-~~dg~lLa-sg~~Dg~V 291 (811)
..+|++++..|...++++|+.+ .+++|-.+.+- . +..+. -...+..+. +.+|+.++ ..+....+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence 1278999999999999999866 59999998762 2 22222 123345555 36777444 44555555
Q ss_pred EEE
Q 003556 292 GVW 294 (811)
Q Consensus 292 ~IW 294 (811)
.-|
T Consensus 451 GRW 453 (479)
T KOG0299|consen 451 GRW 453 (479)
T ss_pred cee
Confidence 555
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=191.37 Aligned_cols=246 Identities=22% Similarity=0.442 Sum_probs=206.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce-----EEEecCCCCCeEEEEEcC----CCCEEEEEE-
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-----ILSLSGHTSGIDSVSFDS----SEVLVAAGA- 78 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~-----~~~l~~h~~~V~~l~fsp----dg~~Lasgs- 78 (811)
.+.-+.|.+.|.|.+|+| .+.++++|+.|.+|++..++...+ -..+.-|.+.|..++|-. .+.+|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 345567999999999999 778999999999999987644332 246777999999999954 345676654
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--C-----CCCeEEEEE
Q 003556 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--H-----TRGVNAIRF 151 (811)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~--h-----~~~I~si~f 151 (811)
.|..|++-|...|+..+.+.+|.+.|.++ ++-+|-.|++|+.|.+|++||++-..++.++.. | ...|.+++.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 47889999999999999999999999876 444588999999999999999998888887742 2 356999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCC
Q 003556 152 TPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPET 227 (811)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----~~l~~~~~~~ 227 (811)
.|.|+.|++|-.|....+||++.++.++.|..|...|.|+.|+|...++++++.|..|++-|++.. -++.....|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999998742 2344456788
Q ss_pred CCeeEEEEecCCCEEEEEECC-CEEEEEec
Q 003556 228 SGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
..+..+.|+|..-.+++.+.+ ...+|.+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 888999999988766666555 68898764
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.4e-22 Score=224.99 Aligned_cols=241 Identities=23% Similarity=0.446 Sum_probs=217.1
Q ss_pred EEEEecCCCCEEE-EEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 9 LQEFVAHSSTVNC-LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 9 i~~~~~H~~~V~~-lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+.|.+|.+.|.+ ++|.+.++..+++|+.|++|.+|......++..+.+|...|.|+....++. +++|+.|.++++|-
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence 4568889999988 888864555699999999999999999999999999999999999888887 88999999999997
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
. +++...+.+|...|+++.+-|.+ .+++|+.|.+|++|.- ++.+++|.+|...|+.+++-+++ .|++++.||.|
T Consensus 129 ~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 129 I--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred c--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceE
Confidence 5 45666799999999999999987 8999999999999974 78899999999999999999765 58999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
++|++ +|+++.++.+|..-|+++...+++..++++++|++++||+.. ++.+.+......|+++.+-++|..++.|++
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccC
Confidence 99999 789999999999999999988888899999999999999977 777888777788999999999999888888
Q ss_pred CCEEEEEecCCc
Q 003556 248 ESLKVFSWEPIR 259 (811)
Q Consensus 248 d~I~Vwd~~~~~ 259 (811)
+.++||..+..+
T Consensus 280 G~VrVfT~~k~R 291 (745)
T KOG0301|consen 280 GRVRVFTVDKDR 291 (745)
T ss_pred ceEEEEEecccc
Confidence 899999987554
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=213.71 Aligned_cols=280 Identities=16% Similarity=0.247 Sum_probs=232.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~--t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~ 92 (811)
.+.|+|+.|+| ...+|++|+.||+++||.++ ....++.+.-...+|.+.+|.|+|. .+++++....++.||+++.+
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 36899999999 88899999999999999984 3345666666678999999999999 89999999999999999887
Q ss_pred EEE--EEcCCC-CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 93 IVR--TLTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 93 ~v~--~l~~h~-~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
... .+.++. ..+.....++++++|+..+..|.|.+....+++.+..++ ..+.|..++|+.|++.|++.+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 543 333443 356778899999999999999999999999999999998 5678999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEecCCCEE
Q 003556 170 WDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRTL 242 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~-~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~------~~~l~~~~~~~~~I~sl~fspdg~~L 242 (811)
||++...+++.|....+ .-++++.+++|.|||+|+..|.|.|||.++ .+++..+......|+++.|++|+++|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999999985322 235677789999999999999999999754 45677777777889999999999999
Q ss_pred EEEECC---CEEEEEecCCceeeeeecc---ccceeEeee-cCCCEEEEEECCCeEEEEEec
Q 003556 243 LCGLHE---SLKVFSWEPIRCHDAVDVG---WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 243 asgs~d---~I~Vwd~~~~~~~~~~~~~---~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
+.++.. .+++-.+.....+.-+... -+.+.++.+ +.+.+||.|..+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 977543 5888887766555444333 344566666 679999999999999999864
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.1e-22 Score=214.92 Aligned_cols=232 Identities=24% Similarity=0.479 Sum_probs=205.4
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (811)
++|...|.|++.++ +++||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++...
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 48999999999999 78899999999999999999999999999999999999998888889999999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (811)
Q Consensus 93 ~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl 172 (811)
.+.++.+|.+.|..+....-++.+-+|+.|+++++|++.. .....|.++.+.+-|++|-.+ ..|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 9999999999999999987788888888999999999953 344567788889999999854 67999999999999999
Q ss_pred CCCeEEEEEec-C-----------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCCCCeeEEEEe
Q 003556 173 TAGKLLHDFKC-H-----------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 173 ~t~~~i~~~~~-h-----------~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----~~l~~~~~~~~~I~sl~fs 236 (811)
...+.++.... | ..+|++++..|...++|+|+.+|.|++|-+..+ +++..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99888877642 2 127899999999999999999999999998876 4555554 56889999999
Q ss_pred cCCCEEEEEECC
Q 003556 237 PDGRTLLCGLHE 248 (811)
Q Consensus 237 pdg~~Lasgs~d 248 (811)
++|+.|++|...
T Consensus 435 ~sgk~ivagiGk 446 (479)
T KOG0299|consen 435 NSGKRIVAGIGK 446 (479)
T ss_pred cCCCEEEEeccc
Confidence 999988888544
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-21 Score=217.92 Aligned_cols=290 Identities=20% Similarity=0.318 Sum_probs=248.6
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCe
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGT 82 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~ 82 (811)
+....+.+|+++.+.|+++.=+| --.++|.|..+|+|.++++..++.+.+++...+.|+.+.|..||. .+++|+..|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 45567889999999999999999 677899999999999999999999999995569999999999998 4566666799
Q ss_pred EEEEECCCCeEEEEEc-----------------------------------------------C----------------
Q 003556 83 IKLWDLEEAKIVRTLT-----------------------------------------------G---------------- 99 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~-----------------------------------------------~---------------- 99 (811)
+.+||++..+.+..+. |
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999985432211000 0
Q ss_pred --------------------------------------------------------------------------------
Q 003556 100 -------------------------------------------------------------------------------- 99 (811)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (811)
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence
Q ss_pred ------------CC------CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCEE
Q 003556 100 ------------HR------SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 100 ------------h~------~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~---~~h~~~I~si~fspdg~~L 158 (811)
+. ..+++++.++.|++.+.|+..|.|-+|++++|-....| ..|..+|+.++...-++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 11 24556777777888888888899999999988888777 4799999999999989999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecC
Q 003556 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspd 238 (811)
++++.+|.+++||......+..+. -...+.++.++....+++.+..|-.|.++|..+.+.+..+.+|...|++++||||
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999999988888777 4567889999998889999999999999999999999999999999999999999
Q ss_pred CCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECC-CeEEEEE
Q 003556 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-SCVGVWV 295 (811)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~D-g~V~IWd 295 (811)
|++|++++.| .|++||+.++.+.+.+.+.-.....-..++|.+||+...| .-|++|.
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999988776 6999999999999998887776666666999999999888 7799994
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=4.8e-22 Score=219.94 Aligned_cols=298 Identities=17% Similarity=0.300 Sum_probs=242.1
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCC----------CcEEEEEECCCeEEEEECCCCceEEE-------------------
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKS----------SRVLVTGGEDHKVNLWAIGKPNAILS------------------- 54 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~----------~~lLatgs~Dg~I~VWdl~t~~~~~~------------------- 54 (811)
++-.|...+..|...|+.+.--|-+ ...++|++.|++|++|++..+..-..
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 4556778888999999999876611 12589999999999999864211000
Q ss_pred ------------------ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC---CC
Q 003556 55 ------------------LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP---FG 113 (811)
Q Consensus 55 ------------------l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fsp---dg 113 (811)
..+....+.+++.+|+|++|++|..-|+|+||++...+....+..|...|.|+.|+. ..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 011234699999999999999999999999999999999999999999999999985 24
Q ss_pred CEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEe-----cCC
Q 003556 114 EFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG--RWVVSGGEDNTVKLWDLTAGKLLHDFK-----CHE 185 (811)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~~-~~~i~~~~~h~~~I~si~fspdg--~~L~sgs~Dg~I~IwDl~t~~~i~~~~-----~h~ 185 (811)
++||+++.|..|.+||+.. ...++++.+|...|+++.|.-.| ..+++++.|..|.+--.+....-..|. ...
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 5899999999999999864 45778899999999999998877 678899999876543322111111121 123
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCcee
Q 003556 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (811)
Q Consensus 186 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~---~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (811)
..++.|+..|..+++++++.|..|+|||+++++....+++ |.+....+...|.|-||++.+.| ++.+||+-.++|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 5689999999999999999999999999999999988854 56778889999999999987655 7999999999999
Q ss_pred eeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCc
Q 003556 262 DAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 262 ~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
...-.+...++.+.+ .|-+.|++.+.||+|.||.+....+
T Consensus 677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred hhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 888888888888877 6789999999999999999887444
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=198.47 Aligned_cols=284 Identities=19% Similarity=0.314 Sum_probs=217.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcCCCCEEEE-EECC
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDSSEVLVAA-GAAS 80 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~-----~~~~l~~h~~~V~~l~fspdg~~Las-gs~D 80 (811)
+.+..+++|.+.|+|++|+. +|+.|+|++.|+.|+||++.+.. ++.. .-.-+--+.+.|.||.+-++. .-..
T Consensus 77 l~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccC
Confidence 34456889999999999998 77889999999999999986532 1111 111234578999999875544 4456
Q ss_pred CeEEEEECCC---CeEEE---------EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE
Q 003556 81 GTIKLWDLEE---AKIVR---------TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148 (811)
Q Consensus 81 G~I~IWDl~t---~~~v~---------~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~s 148 (811)
.++++|.+.. |.... .-+.|...+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 6899998642 22111 112355667777777778899999999999999998 8888888876667778
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECC---CC-----eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC---
Q 003556 149 IRFTPDGRWVVSGGEDNTVKLWDLT---AG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--- 217 (811)
Q Consensus 149 i~fspdg~~L~sgs~Dg~I~IwDl~---t~-----~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~--- 217 (811)
.+.+|+|+++++++..--|++|.+- .| ..+..+++|...|..++|+++...+++.+.||++++||+.-.
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 8999999999999999999999863 22 346678899999999999999999999999999999998531
Q ss_pred ----eEEEEe----CCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeee-eccccceeEeee-cCCCEEEEEEC
Q 003556 218 ----ELIGSA----GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYN 287 (811)
Q Consensus 218 ----~~l~~~----~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~-~~~~~~i~~l~~-~dg~lLasg~~ 287 (811)
+.+... ....+....+.++|+|+.|+++....+++|.-+.++.+..+ +.+...+.++.+ .+|++++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 122221 11233345899999999999998889999999988777665 566777888877 68899988765
Q ss_pred CCeEEEE
Q 003556 288 QSCVGVW 294 (811)
Q Consensus 288 Dg~V~IW 294 (811)
..+++.
T Consensus 394 -r~vrv~ 399 (420)
T KOG2096|consen 394 -RYVRVI 399 (420)
T ss_pred -eeeeee
Confidence 466665
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=220.70 Aligned_cols=275 Identities=17% Similarity=0.239 Sum_probs=223.4
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (811)
.+|...-+.++|.| ++.+|++++.||.|++|+.... +....+..+...|.+++. .+.+|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 58999999999999 5568999999999999997655 444444447788888876 4558999999999999999988
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
+.-..+....-++.+++|+.+|+++|.|+.|-.|++.++........+++|..+|.++.|+|.+++|++.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 87666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecC--------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEecCCCE
Q 003556 172 LTAGKLLHDFKCH--------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRT 241 (811)
Q Consensus 172 l~t~~~i~~~~~h--------~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~--~~~~I~sl~fspdg~~ 241 (811)
+.++.+...+.+- ...+..++|+|+|..|+..+.|+.|++|+..+++....+.. +...+.+++|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 9998877665431 34567899999988888888999999999999998887654 3445899999999999
Q ss_pred EEEEECC-CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEE
Q 003556 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IW 294 (811)
||+++-+ .|.||++++... ......+.++.+ ++..-+.+-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9988665 699999997322 112233444444 344555444444444444
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=2.8e-22 Score=204.22 Aligned_cols=248 Identities=22% Similarity=0.420 Sum_probs=210.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
-|++|..|.+.|+++.|+| ...+|++|+.|++|++||+.+......++ ....+|.++.|+|.|.+|++|....++++
T Consensus 164 vIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred eEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 5789999999999999999 77899999999999999997654333222 24578999999999999999999999999
Q ss_pred EECCCCeEEEEE---cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC-CCeEEEEEcCCCCEEEE
Q 003556 86 WDLEEAKIVRTL---TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT-RGVNAIRFTPDGRWVVS 160 (811)
Q Consensus 86 WDl~t~~~v~~l---~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~-~~I~si~fspdg~~L~s 160 (811)
||+++.++...- .+|.+.|+++.+++.|++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+|+++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 999998876554 3688999999999999999999999999999999999998885 454 46899999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCC--C---CeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEe-CCCCCCeeEE
Q 003556 161 GGEDNTVKLWDLTAGKLLHDFKCHE--G---QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSA-GPETSGVRCL 233 (811)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~--~---~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl 233 (811)
.+.|..+++|.+.+++++..+.+.. + --+...|+..+.+++.-.+ .+.+.-||.++...+..+ .+|.+.++.+
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999999999999999999988632 1 1345668887777776653 568999999988765543 5789999999
Q ss_pred EEecCCCEEEEEECC-CEEEEEec
Q 003556 234 TFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
.-+|.+..++++++| ..++|.-.
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EeCCCCCceeeecccceeeeeeec
Confidence 999999999999888 68998643
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.8e-21 Score=195.86 Aligned_cols=276 Identities=16% Similarity=0.239 Sum_probs=214.3
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~ 98 (811)
-.|+.|++ .|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999 78899999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 99 GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKG------HTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 99 ~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~------h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
..++|+.+.|+|... .+++.-.+..-.+.++...+ +++-. ......+..|.+.|+++++|...|.+.+||
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 788999999999654 33333344445555555422 22211 111223446889999999999999999999
Q ss_pred CCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE---------EEeCC--CCCCeeEEEEecCC
Q 003556 172 LTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI---------GSAGP--ETSGVRCLTFNPDG 239 (811)
Q Consensus 172 l~t~~~i~~~~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l---------~~~~~--~~~~I~sl~fspdg 239 (811)
..+.+++..++... ..|..+.|+..|.+|+.-+.|+.|+.|+++.-... +.++. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999999998765 78999999999999999999999999998732111 11111 12334678999999
Q ss_pred CEEEEEECC--CEEEEEecCCceeeeeeccc-cceeEeeecCCCEEEEEECCCeEEEEEecC
Q 003556 240 RTLLCGLHE--SLKVFSWEPIRCHDAVDVGW-SRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 240 ~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~-~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.|+++|+.. .+.||.-..+....++...- ..+.++.+|.-.-++.+-..|.|+||.+..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 999988866 47777766676666654443 344455555555555666889999997764
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.6e-22 Score=211.16 Aligned_cols=223 Identities=21% Similarity=0.341 Sum_probs=199.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-----
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE----- 89 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~----- 89 (811)
-.++|.|++-+| .+.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 346899999998 78889888899999999999999999999999999999999999999999999999999873
Q ss_pred ----CCeEEEEEcCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003556 90 ----EAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 90 ----t~~~v~~l~~h~~~I~sl~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~ 163 (811)
+-++.+.+..|.-+|+++...+-| .++++++.|.++++||+..+..+.++. ....+.+++.+|-++.+++|+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 346788899999999999887653 489999999999999999999988887 5778999999999999999999
Q ss_pred CCeEEEEECCC----------------CeEEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003556 164 DNTVKLWDLTA----------------GKLLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (811)
Q Consensus 164 Dg~I~IwDl~t----------------~~~i~~~~~h~~--~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~ 225 (811)
+|.|.+.++.. +..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.+++.++..
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 99999887743 234556778877 999999999999999999999999999999999988877
Q ss_pred CCCCeeEEEEecCC
Q 003556 226 ETSGVRCLTFNPDG 239 (811)
Q Consensus 226 ~~~~I~sl~fspdg 239 (811)
..++|+.+.+.|-.
T Consensus 318 ~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 318 SKGPVTNLQINPLE 331 (476)
T ss_pred hccccceeEeeccc
Confidence 78889999886653
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=8.4e-20 Score=195.71 Aligned_cols=257 Identities=14% Similarity=0.178 Sum_probs=197.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLW 86 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IW 86 (811)
.++.+..|. .+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++|
T Consensus 23 ~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 455666554 4778999996655567788899999999998888877765544 5678999999977655 568999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-ED 164 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg-~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs-~D 164 (811)
|+.+++.+..+.. ...+.+++|+|+|.++++++.++ .+.+||..+++....+.. .....+++|+|+|.+|++++ .+
T Consensus 101 d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9999888877763 34467899999999999988765 567789988877665542 34467899999999886554 58
Q ss_pred CeEEEEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 165 NTVKLWDLTAGKLLHDFKCHE-------GQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~-------~~V~sv~fspdg~~Lasg-s~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
+.|++||+.+++.+..+..+. .....+.|+|++.+++++ +.++.|.+||+++++.+..+. +...+.+++|+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 999999999998777664321 123568899999986554 456789999999988776553 34578999999
Q ss_pred cCCCEEEEEE--CCCEEEEEecCCceeeeeecccc
Q 003556 237 PDGRTLLCGL--HESLKVFSWEPIRCHDAVDVGWS 269 (811)
Q Consensus 237 pdg~~Lasgs--~d~I~Vwd~~~~~~~~~~~~~~~ 269 (811)
|+|++|+++. ++.|.+||+...++...+..+..
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 9999998764 45799999999888777765543
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.1e-22 Score=195.59 Aligned_cols=243 Identities=20% Similarity=0.346 Sum_probs=197.7
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (811)
-..|.+.|..+...- .+..|||++.|++|+|+.+... +.+.++.||.++|..++|.. .|.+|++++.||+|.||
T Consensus 7 dt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 357888898888776 5677999999999999999654 56788999999999999955 79999999999999999
Q ss_pred ECCCCeE--EEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCC-e--EEEEEecCCCCeEEEEEcCC---C-
Q 003556 87 DLEEAKI--VRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK-G--CIHTYKGHTRGVNAIRFTPD---G- 155 (811)
Q Consensus 87 Dl~t~~~--v~~l~~h~~~I~sl~fspd--g~~Lasgs~Dg~I~IwDl~~~-~--~i~~~~~h~~~I~si~fspd---g- 155 (811)
.-+.++- ......|...|++++|-|. |-.|++++.||.|.+.+.+.. . .......|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9887743 3445679999999999884 558999999999999998754 1 23345679999999999985 4
Q ss_pred ----------CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCC----CCEEEEEECCCeEEEEECCCCe-
Q 003556 156 ----------RWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPH----EFLLATGSADRTVKFWDLETFE- 218 (811)
Q Consensus 156 ----------~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~V~sv~fspd----g~~Lasgs~Dg~I~IwDl~~~~- 218 (811)
+.|++|+.|..|+||+..++. ....+.+|.+.|..++|.|. ..+||+++.||+|.||-.+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 579999999999999998763 34457889999999999996 3589999999999999876311
Q ss_pred --EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 219 --LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 219 --~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
....+......+..+.||..|.+|+++..+ .+.+|.-
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 112234456779999999999999977555 5777754
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.3e-20 Score=203.89 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=227.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-ceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
+....+..-.+.|+|+||+.++ +.||.+-.||.|.||++... -+...+.++. ..|..++|.+.+ .|++.+.+|.|.
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEE
Confidence 4445555667899999999854 56999999999999999754 2334555554 689999999555 556778899999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEE
Q 003556 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--~~~h~~~I~si~fspdg~~L~sgs 162 (811)
-||+.+++....+....+.|++++.+|.+..++.|+.||.++.++...++.... +...++.|.++.|+|++..+++|+
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999999999999999999999999999999999999888888877765443 344568899999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003556 163 EDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~--------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~ 234 (811)
.||.|++||...+..++.... ...-|+++.|-.++ .|++|...|+|.+||...+.++..+..|...|.+++
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 999999999999887763221 12347888888655 799999999999999999999999999999999999
Q ss_pred EecCCCEEEEEECC-CEEEEEecCCcee----eeeeccccceeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 235 FNPDGRTLLCGLHE-SLKVFSWEPIRCH----DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~~----~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
..+++.++++++-+ .+.-|...+.... ...+.+.+.+..+...+. .+.+|+.|..+.+-...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSR 319 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEcccc
Confidence 99998888876655 5666666555331 112444455556655444 78888888887765443
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-20 Score=193.32 Aligned_cols=265 Identities=18% Similarity=0.257 Sum_probs=210.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (811)
...|..+.|+| .+..|++++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 56899999998 45556667799999999998775555554 899999999987 5578899999999999999887654
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (811)
. -.|...|.|+.+.+....+++|+.|+.|++||.+.......+.. ...|.++... |+.|++|+.|..+.+||+++.
T Consensus 90 i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 I-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred e-ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 4 45999999999999888999999999999999998666666663 4478888776 778999999999999999986
Q ss_pred eEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCC---------CCCeeEEEEecCCC
Q 003556 176 KLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPE---------TSGVRCLTFNPDGR 240 (811)
Q Consensus 176 ~~i~~~~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----~~l~~~~~~---------~~~I~sl~fspdg~ 240 (811)
....+.. .....+.|+++.|++.-+++++-||.|.+=.++.. +.-..++.| ..+|++|+|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 6544332 23467899999999888999999999887666543 222333333 24789999999988
Q ss_pred EEEEEECCC-EEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEEC
Q 003556 241 TLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN 287 (811)
Q Consensus 241 ~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~ 287 (811)
.+++|+.|+ +.+|+..+.+.+..+..--..+..+.+ .+|..||.++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999887665 889999988877766554444666665 78899988754
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=9.4e-21 Score=192.10 Aligned_cols=283 Identities=19% Similarity=0.346 Sum_probs=215.5
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc------------eEE---EecCCCCCeEEEEEcC-CCCEEEE
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------------AIL---SLSGHTSGIDSVSFDS-SEVLVAA 76 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~------------~~~---~l~~h~~~V~~l~fsp-dg~~Las 76 (811)
..|.+.|+.+.+.+..++++++|+.||.|.|||++... ++. .-.+|.-.|..+.|.| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999999999999999999999996432 110 1135788999999988 5558889
Q ss_pred EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003556 77 GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (811)
Q Consensus 77 gs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg---~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp 153 (811)
++.|.++++||..+.+....|+ ..+.|.+-+|+|-. .++|+|..+-.|++.|+..|.+-+++.+|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999999888887 56788888998843 4788999999999999999999999999999999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCC-eEEEEE--------------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003556 154 DGRW-VVSGGEDNTVKLWDLTAG-KLLHDF--------------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (811)
Q Consensus 154 dg~~-L~sgs~Dg~I~IwDl~t~-~~i~~~--------------~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~ 217 (811)
...| |++|+.||.|++||++.. -+...+ ..|.+.+..++|..++.++++.+.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 7765 578999999999999853 222222 246688999999999999999999999999999887
Q ss_pred eEEEE-eC--CCC---CCeeEEEEecC-CCEEEEEECCCEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCC
Q 003556 218 ELIGS-AG--PET---SGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (811)
Q Consensus 218 ~~l~~-~~--~~~---~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg 289 (811)
+.... +. .|. +.-..+. +.+ +-++..-.++++.++.+-.+.....++.+...+.+... ++=+...++..|+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC
Confidence 53221 10 011 1001122 222 22333334456777777777766666666555554444 4556777888899
Q ss_pred eEEEEEec
Q 003556 290 CVGVWVVD 297 (811)
Q Consensus 290 ~V~IWdvd 297 (811)
.+..|...
T Consensus 358 ni~~w~p~ 365 (397)
T KOG4283|consen 358 NIYMWSPA 365 (397)
T ss_pred cccccccc
Confidence 99999763
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=196.75 Aligned_cols=255 Identities=24% Similarity=0.444 Sum_probs=217.1
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003556 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwD 129 (811)
..+..+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.||.+.|.++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34556789999999999988778899999999999999999999999999999999999999999999999999999996
Q ss_pred C------CC----------------------------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 130 I------RK----------------------------------KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 130 l------~~----------------------------------~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
. .. ..++..+.+|...|.+..|...|..+++++.|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 11 0145667889999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
||+.+|+.+..+.+|....+.++-+|..+++++.+.|-+.++||++. -..+..+++|...|+++.|.-|.+ +++|++|
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD 377 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD 377 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCC
Confidence 99999999999999999999999999999999999999999999984 345677999999999999997765 5566666
Q ss_pred -CEEEEEecCCcee-eeeeccccceeEeeecCC-CEEEEEECCCeEEEEEecCCCceeeee
Q 003556 249 -SLKVFSWEPIRCH-DAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVVDISRIEPYTI 306 (811)
Q Consensus 249 -~I~Vwd~~~~~~~-~~~~~~~~~i~~l~~~dg-~lLasg~~Dg~V~IWdvd~~~~~p~~~ 306 (811)
.++||++...+.. ..+.. -+++..+.+..| ++++.--++..|++||+.+.++..+.+
T Consensus 378 rTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 7999999887643 33332 234445555544 578888888899999999998876553
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.9e-20 Score=198.99 Aligned_cols=279 Identities=19% Similarity=0.321 Sum_probs=217.5
Q ss_pred EecCC-CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 12 FVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~-~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
|+.+. .-|.|++|.+++. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-
T Consensus 241 fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred cccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 44433 4799999999544 89999999999999988887777779999999999999998775 99999999998311
Q ss_pred Ce-----------E-----------------------------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003556 91 AK-----------I-----------------------------VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 91 ~~-----------~-----------------------------v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl 130 (811)
.+ . .....+|....+.++.+|+.+.+++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN- 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence 00 0 112346888889999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003556 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (811)
Q Consensus 131 ~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 210 (811)
..+.+.+.. ...++.|+.|+|.| .++.|+..|...+.|..+...+..-.. ..+++++.|+|+|.+||.|+.|+.|+
T Consensus 397 -~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 -DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred -CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 555665554 46789999999999 999999999999999999777766665 88999999999999999999999999
Q ss_pred EEECCCCe-EEEEe-CCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecCCceeeee---eccccceeE-----------
Q 003556 211 FWDLETFE-LIGSA-GPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAV---DVGWSRLSD----------- 273 (811)
Q Consensus 211 IwDl~~~~-~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~---~~~~~~i~~----------- 273 (811)
||-+.... ..... ..+..+|+.+.|++|+++|.+-+.|. |-.| .+..|.+.. ++.|....+
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW--~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW--KPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE--ccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 99886533 22222 33348999999999999999887663 5555 555543322 333322211
Q ss_pred -------eeecCCCEEEEEECCCeEEEEEecCCC
Q 003556 274 -------LNVHEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 274 -------l~~~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
...++.+++++|.+.|.|++|...-.+
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 122668999999999999999655433
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=8.1e-22 Score=221.20 Aligned_cols=231 Identities=24% Similarity=0.508 Sum_probs=193.0
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t---~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
.+..++|+....++|||++..|.|.+||+.. .+.+..+..|+..+.++.|++. -.+|++|+.||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4556788876788999999999999999977 5666788899999999999875 45899999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 94 VRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~-~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
..++.+....|..+.|+| .+.+|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.||++||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 999999999999999999 4668999999999999999864 46778889999999999999999999999999999999
Q ss_pred CCCCeE--EEEEecCCCCeEEEEEeCCC-CEEEEEE--CCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEec-CCCEEEE
Q 003556 172 LTAGKL--LHDFKCHEGQIQCIDFHPHE-FLLATGS--ADRTVKFWDLET-FELIGSAGPETSGVRCLTFNP-DGRTLLC 244 (811)
Q Consensus 172 l~t~~~--i~~~~~h~~~V~sv~fspdg-~~Lasgs--~Dg~I~IwDl~~-~~~l~~~~~~~~~I~sl~fsp-dg~~Las 244 (811)
..+++. +.++. ...+|.++.|-|.. ..||+++ .|-.|+|||++. .-+...+..|...++.++|.. |-..+.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986643 33333 45789999999975 4566665 477899999975 445667888989999999975 3334445
Q ss_pred EECCC
Q 003556 245 GLHES 249 (811)
Q Consensus 245 gs~d~ 249 (811)
++.|+
T Consensus 328 ~sKD~ 332 (839)
T KOG0269|consen 328 CSKDG 332 (839)
T ss_pred ecCcc
Confidence 55554
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=6.1e-21 Score=205.52 Aligned_cols=238 Identities=22% Similarity=0.386 Sum_probs=185.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE------------EecCCCCCeEEEEEcCCCC-EEEEEECCCe
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------------SLSGHTSGIDSVSFDSSEV-LVAAGAASGT 82 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~------------~l~~h~~~V~~l~fspdg~-~Lasgs~DG~ 82 (811)
...|+++.|++.++.+|++. .....+|+|-...+... ..+||...++|.+|+|..+ .+++++.||+
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvs-g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVS-GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccccceeeecCCCCeEEEEe-cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 34699999999666555544 45678999865333322 2357999999999999654 7889999999
Q ss_pred EEEEECCCCe-EEEEEc-----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE---EEEEecCCC--CeEEEEE
Q 003556 83 IKLWDLEEAK-IVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTR--GVNAIRF 151 (811)
Q Consensus 83 I~IWDl~t~~-~v~~l~-----~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~---i~~~~~h~~--~I~si~f 151 (811)
+++||++..+ ....++ +-.-+++.++|+++|+.||+|+.||.|.+|+...... ...-+.|.. .|+||.|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999997654 222332 3345789999999999999999999999999864332 233346776 8999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe-EEEEEec--CCCCeEEEEEeCCCCEEEEEEC------CCeEEEEECCCCeEEEE
Q 003556 152 TPDGRWVVSGGEDNTVKLWDLTAGK-LLHDFKC--HEGQIQCIDFHPHEFLLATGSA------DRTVKFWDLETFELIGS 222 (811)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~--h~~~V~sv~fspdg~~Lasgs~------Dg~I~IwDl~~~~~l~~ 222 (811)
++||++|++-+.|+.+++||+++.+ ++..+.+ ...+-+.++|+|+.++|++|+. .|++.+||..+.+.+..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999999999999999999999754 4554443 2345678899999999999863 57899999999999999
Q ss_pred eCCCCCCeeEEEEecCCCEEEEEECC-CEEEEE
Q 003556 223 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 254 (811)
Q Consensus 223 ~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd 254 (811)
+......|..+.|+|.=+.|++|+.+ +++||.
T Consensus 453 i~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 98888889999999986666666555 577763
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=196.90 Aligned_cols=242 Identities=25% Similarity=0.511 Sum_probs=192.7
Q ss_pred EEecCCCCEEEEEEeeC-CCcEEEEEECCCeEEEEECC----------------CCceEEEecCCCCCeEEEEEcCCCC-
Q 003556 11 EFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIG----------------KPNAILSLSGHTSGIDSVSFDSSEV- 72 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~-~~~lLatgs~Dg~I~VWdl~----------------t~~~~~~l~~h~~~V~~l~fspdg~- 72 (811)
...+|.+.|+.+.-.+. +..+.++-++.|.|+||++. ..+.+.++.+|...=+.|+|+|-..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34568888888888775 35567777899999999973 2356788899999999999999332
Q ss_pred EEEEEECCCeEEEEECCCCeEE---EEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC---eEEEEEecCCCC
Q 003556 73 LVAAGAASGTIKLWDLEEAKIV---RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK---GCIHTYKGHTRG 145 (811)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v---~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~---~~i~~~~~h~~~ 145 (811)
.|++|..-+.|++|...++... .-+.+|...|-.++|+|..+ .|++|+.||+|+|||++.+ .++.+ +.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 4778888899999999887643 34567999999999999765 8999999999999999987 44544 889999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCe---
Q 003556 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE--- 218 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~--- 218 (811)
|+.|.|+.+-.+|++|+.||+++|||+++ ++.+..|+.|..+|+++.|+|. ...|++++.|.+|.|||+.--.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999985 5678899999999999999996 4688888999999999985311
Q ss_pred ----------------EEEEeCCCCCCeeEEEEecCCC-EEEEEECCCEEEEE
Q 003556 219 ----------------LIGSAGPETSGVRCLTFNPDGR-TLLCGLHESLKVFS 254 (811)
Q Consensus 219 ----------------~l~~~~~~~~~I~sl~fspdg~-~Lasgs~d~I~Vwd 254 (811)
+++... ....+..+.|+++-. +|++.+.+++.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccceeEEE
Confidence 111111 234577788888633 55555667777774
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.2e-20 Score=201.74 Aligned_cols=241 Identities=24% Similarity=0.438 Sum_probs=193.1
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe----------EEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCc
Q 003556 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAK----------IVRTLTGHRSNCISVDFHPFGE-FFASGSLDTN 124 (811)
Q Consensus 57 ~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~----------~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~ 124 (811)
.|.+.|+.+.+-|+.. .|++++..+.|.|||..... +-..+.+|...-.+++|++... ++++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4888899999988665 66667888999999985421 2237789999889999999665 7999999999
Q ss_pred EEEEECCCCe-------EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEe
Q 003556 125 LKIWDIRKKG-------CIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFH 194 (811)
Q Consensus 125 I~IwDl~~~~-------~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~V~sv~fs 194 (811)
|++||+.... ....+.+|...|..++|++ +...|++++.|+.+.|||+| +.+......+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997532 3566789999999999999 55678899999999999999 566777788899999999999
Q ss_pred C-CCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCCC-EEEEE-ECCCEEEEEecCCcee---------
Q 003556 195 P-HEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGR-TLLCG-LHESLKVFSWEPIRCH--------- 261 (811)
Q Consensus 195 p-dg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg~-~Lasg-s~d~I~Vwd~~~~~~~--------- 261 (811)
| ++.+||+|+.|++|.+||+++. ++++.+.+|...|.++.|+|... .|+++ .++.+.|||+......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 9 5778999999999999999984 57888999999999999999765 45544 4457999999753222
Q ss_pred -----eeeeccccceeEeeec--CCCEEEEEECCCeEEEEEec
Q 003556 262 -----DAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 262 -----~~~~~~~~~i~~l~~~--dg~lLasg~~Dg~V~IWdvd 297 (811)
.+-..+...+.++.+. +--.+++..+|+.+.||.+.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1223444566666663 34577788999999999876
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=200.73 Aligned_cols=236 Identities=20% Similarity=0.383 Sum_probs=202.2
Q ss_pred ECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 36 GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 36 s~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
.....|.+|.+..........--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-||.+
T Consensus 58 ~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ 137 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH 137 (476)
T ss_pred ccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE
Confidence 34457899998766655544445688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEECC---------CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003556 116 FASGSLDTNLKIWDIR---------KKGCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (811)
Q Consensus 116 Lasgs~Dg~I~IwDl~---------~~~~i~~~~~h~~~I~si~fspd--g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (811)
|++|+.||.|.+|++- +-++++.+..|.-+|+++...+. ..+|++++.|.++++||+..+.++..+. .
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-f 216 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-F 216 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-c
Confidence 9999999999999763 34578889999999999998764 3589999999999999999999998887 5
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----------------eEEEEeCCCCC--CeeEEEEecCCCEEEEEE
Q 003556 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----------------ELIGSAGPETS--GVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 185 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----------------~~l~~~~~~~~--~I~sl~fspdg~~Lasgs 246 (811)
...+.+++.+|-++.+++|+.+|.|.+.++.+. ..+..+.+|.+ .|+|++++-||..|++|.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 788999999999999999999999999887542 23445667777 999999999999999998
Q ss_pred CC-CEEEEEecCCceeeeeecccccee
Q 003556 247 HE-SLKVFSWEPIRCHDAVDVGWSRLS 272 (811)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~i~ 272 (811)
.+ .+.|||....+|.+.+....+++.
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred CCCCEEEEecchHHHHHHHhhhccccc
Confidence 77 599999999888877654344433
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4e-21 Score=215.70 Aligned_cols=279 Identities=21% Similarity=0.381 Sum_probs=213.2
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCC----CceEEEecCC---CCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGH---TSGIDSVSFDS-SEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t----~~~~~~l~~h---~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl 88 (811)
...+.+...++..+ ++.++. ..+.||.+.. ..+...+... ...+..++|.. +.++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~q-iv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQ-IVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcce-eEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34556677774444 555544 3577777642 2233332221 12456688864 5679999999999999999
Q ss_pred CC---CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003556 89 EE---AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (811)
Q Consensus 89 ~t---~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs~ 163 (811)
.. .+.+..|..|...+.+++|++... +|++|+.||.|++||++..+...++.+....|..+.|+| .+..|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 667778899999999999998654 799999999999999999999999988888999999999 6789999999
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEecCCC
Q 003556 164 DNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGR 240 (811)
Q Consensus 164 Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~--l~~~~~~~~~I~sl~fspdg~ 240 (811)
.|.+.+||++.. ++...+..|.++|.|+.|||++.+||+|+.|+.|+|||..+.+. +.++. ...++.++.|-|...
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence 999999999965 46677889999999999999999999999999999999986543 33333 247899999999877
Q ss_pred EEE-EEE---CCCEEEEEecC-CceeeeeeccccceeEeeecC--CCEEEEEECCCeEEEEEecC
Q 003556 241 TLL-CGL---HESLKVFSWEP-IRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 241 ~La-sgs---~d~I~Vwd~~~-~~~~~~~~~~~~~i~~l~~~d--g~lLasg~~Dg~V~IWdvd~ 298 (811)
+.+ +++ +-.|+|||+.. .-....+.-+...+..+.+.. -..|.+++-||.|..-.++.
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 654 332 23699999864 334556666666777777754 56777888888776554443
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.5e-20 Score=188.40 Aligned_cols=230 Identities=23% Similarity=0.357 Sum_probs=193.7
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (811)
...|..++.+++|.+ ...+++|+.||.|+.+|+.+++... +..|..+|.||.+.+....+++|+.|++|++||....
T Consensus 50 ~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred heecCCceeeeeccC--CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 345899999999986 4469999999999999998877654 5569999999999998889999999999999999876
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~--~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
..+..+. ....|.++... |+.|++|+.+..+.+||+++.....+.. ..+-.+.|+++-|++.-+++++-||.|.+
T Consensus 127 ~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 127 VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 6666665 34478888776 8899999999999999999876544322 23457899999998888999999999888
Q ss_pred EECCCC----eEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 170 WDLTAG----KLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 170 wDl~t~----~~i~~~~~h~---------~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
=.+... .....|++|. .+|++++|||-...||+|+.||.|.+||+.+.+.+..+......|.+++|+
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 666654 4455677764 369999999998899999999999999999999998888888889999999
Q ss_pred cCCCEEEEEEC
Q 003556 237 PDGRTLLCGLH 247 (811)
Q Consensus 237 pdg~~Lasgs~ 247 (811)
.||..||+++.
T Consensus 284 ~dG~~LAia~s 294 (323)
T KOG1036|consen 284 MDGSLLAIASS 294 (323)
T ss_pred cCCCeEEEEec
Confidence 99999998864
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=5.8e-21 Score=204.70 Aligned_cols=236 Identities=18% Similarity=0.386 Sum_probs=204.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE--EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
..-|.++.+.| +++-|++|++-.++.|||+....... .+..-.-..++++.+||.++.++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 45688889999 66778899999999999997655433 3333345677889999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~ 173 (811)
++.|.+|.+.+.||.++++|..|.+|+.|.+|+.||++.+..+.... ....|.++-++|.+.||+.|...+.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999988776665 56789999999999999999999999888765
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEE
Q 003556 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKV 252 (811)
Q Consensus 174 t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~V 252 (811)
. .....+..|+..|.++.|.+.|+++++.+.|+.+..|.+.-|..++.... .+.|.++.++-|.+||++|+.+ .-.|
T Consensus 623 k-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 K-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred C-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEE
Confidence 4 44556667899999999999999999999999999999998888877654 5779999999999999999887 5667
Q ss_pred EEe
Q 003556 253 FSW 255 (811)
Q Consensus 253 wd~ 255 (811)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 654
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.5e-20 Score=208.63 Aligned_cols=241 Identities=20% Similarity=0.316 Sum_probs=201.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003556 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (811)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~-~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (811)
.+|+.+.+.|+|.++|.+|++++.||.|++|+.... +.-.++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468899999999999999999999999999997665 4444444467777777664 6699999999999999999887
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 135 ~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
.-..+....-++++++|+.+|++++.|++|-.|++.++.+......+.+|.++|.++.|+|++.+||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 66566666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC--------CCCeeEEEEecC-CCEEEEEECCCEEEEEecCCceeeeeec--cccceeEeee-cCCCEE
Q 003556 215 ETFELIGSAGPE--------TSGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDV--GWSRLSDLNV-HEGKLL 282 (811)
Q Consensus 215 ~~~~~l~~~~~~--------~~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~--~~~~i~~l~~-~dg~lL 282 (811)
.++.+...+.+- ...+..++|+|+ |.+++.+.++.+++|+-+.......+.. ..+.+.++.+ ++|++|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 998876654321 334577899999 6677778888999998877665544422 2233555555 889999
Q ss_pred EEEECCCeEEEEEecC
Q 003556 283 GCSYNQSCVGVWVVDI 298 (811)
Q Consensus 283 asg~~Dg~V~IWdvd~ 298 (811)
|+++.||.|.|||+++
T Consensus 248 AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccCCcEEEEeccc
Confidence 9999999999999996
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=1.9e-18 Score=186.05 Aligned_cols=286 Identities=20% Similarity=0.340 Sum_probs=226.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEE---ecCC-CCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS---LSGH-TSGIDSVSFDSSEVLVAAGAASGTI 83 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~---l~~h-~~~V~~l~fspdg~~Lasgs~DG~I 83 (811)
++-..+.-+..|..+.|+|.+.+++++++. |.+.+|+...+..... +..+ ...|.|++|.++|. +++|..+|.|
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i 269 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNI 269 (626)
T ss_pred ccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceE
Confidence 444555666788899999999998888876 6799999987765543 3332 36799999999997 4599999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-----------EE----------------
Q 003556 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-----------CI---------------- 136 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-----------~i---------------- 136 (811)
.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-.+ .+
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 9999998888888779999999999999887655 9999999999832100 01
Q ss_pred -------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003556 137 -------------HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (811)
Q Consensus 137 -------------~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg 203 (811)
....+|......++.+|+.+.+++++.|+.+++|+ ..+++.... ...++.|+.|+|.| .+|.|
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEe
Confidence 11235777888999999999999999999999999 555555544 46788999999999 99999
Q ss_pred ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCcee-ee-eeccccceeEeee-cCC
Q 003556 204 SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH-DA-VDVGWSRLSDLNV-HEG 279 (811)
Q Consensus 204 s~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~-~~-~~~~~~~i~~l~~-~dg 279 (811)
+..|...+.|.++...+..-.. ..+++++.|+|+|.+||+|+.| .|.||..+..... .. -....+++..+.+ .|+
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred eccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 9999999999999666654444 8899999999999999999888 4899988764332 11 1222367777766 789
Q ss_pred CEEEEEECCCeEEEEEecCCCc
Q 003556 280 KLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 280 ~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
++|.+-+.|-.|-.|.....+.
T Consensus 504 ~~~~~~S~d~eiLyW~~~~~~~ 525 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWKPSECKQ 525 (626)
T ss_pred ceEEeccCceEEEEEccccCcc
Confidence 9999999999999995555443
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=2.4e-18 Score=194.88 Aligned_cols=288 Identities=18% Similarity=0.295 Sum_probs=225.5
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (811)
.|+++.--+.--+-++.|+.+|.+.+|++.+++.+.+++++...|+++.=+|-=..++.|..+|+|.++++..++.+.++
T Consensus 161 ~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 161 FITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred ceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 37776532222345889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 98 TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (811)
Q Consensus 98 ~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (811)
+...+.|+++.|.-||. .+++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 95569999999999998 56777778999999999887666554 56666666666666666666666666555522200
Q ss_pred ------------------------------------------------------e---------------------E---
Q 003556 176 ------------------------------------------------------K---------------------L--- 177 (811)
Q Consensus 176 ------------------------------------------------------~---------------------~--- 177 (811)
+ .
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 0 0
Q ss_pred -----------------------EEE------------Ee-----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003556 178 -----------------------LHD------------FK-----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (811)
Q Consensus 178 -----------------------i~~------------~~-----~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~ 217 (811)
..+ +. .....+++++.++.|++.+.|+..|.|-+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 000 00 01145788999999999999999999999999999
Q ss_pred eEEEEe---CCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeee------------------------------
Q 003556 218 ELIGSA---GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA------------------------------ 263 (811)
Q Consensus 218 ~~l~~~---~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~------------------------------ 263 (811)
-....+ ..|.++|+.++...-++.+++++.+ -+++|++........
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 988888 4889999999999888888876655 589999876431110
Q ss_pred -----------eeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCceeee
Q 003556 264 -----------VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (811)
Q Consensus 264 -----------~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~p~~ 305 (811)
+..+...+.++.+ +||++|++++.|++|++||+-++.+-.-.
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 1234566777766 89999999999999999999998876433
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=193.52 Aligned_cols=291 Identities=18% Similarity=0.270 Sum_probs=216.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCC-cEEEEEECCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCC-CEEEEEECCC
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASG 81 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~-~lLatgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~DG 81 (811)
.....+.|.+.|+|++|+|... .++++|..-|.|-+||+.+ ...+..+..|..+|.+|.|+|.. ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3456678999999999999665 7899999999999999952 23456677899999999999954 5788999999
Q ss_pred eEEEEECCCCeE--EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCE
Q 003556 82 TIKLWDLEEAKI--VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPD-GRW 157 (811)
Q Consensus 82 ~I~IWDl~t~~~--v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~~~~h~~~I~si~fspd-g~~ 157 (811)
+|++-|++.+.. +..+......+..+.|+.+...++++..=|...+||++.++. ...+..|...|.+++++|- ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987643 333333455678889998888888888888999999998765 6667778889999999994 457
Q ss_pred EEEEECCCeEEEEECCCCe--E--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC----CCeEEEEeCCCC--
Q 003556 158 VVSGGEDNTVKLWDLTAGK--L--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE----TFELIGSAGPET-- 227 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~--~--i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~----~~~~l~~~~~~~-- 227 (811)
|++++.|++.+|||++.-. . +.....|...|.++.|+|.+..|++.+.|..|+|||.. ...+...+....
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 8899999999999998532 1 22223488999999999998789999999999999983 444444443221
Q ss_pred -CC--eeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccc-cceeEe-eec--CCCEEEEEECCCeEEEEEecC
Q 003556 228 -SG--VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW-SRLSDL-NVH--EGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 228 -~~--I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~-~~i~~l-~~~--dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.. .....|.|+..++++|..- .|-||+-+.++....+.... ..+.++ .+| +..+++.+...|.|+||--+.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 12 3445799999999998654 58899887776433321111 122222 222 233566666778899886543
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-19 Score=196.62 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=218.7
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIKLW 86 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~IW 86 (811)
-..|.+|++.|.|+...| .+.+|++|+.||+|+||.+.++.|+..+. ..+.|.||+|+|.+. .||++- ...+.|.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 356899999999999999 88999999999999999999999999887 456899999999765 344433 3334444
Q ss_pred ECCCC-------------------------------------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC---CcEE
Q 003556 87 DLEEA-------------------------------------KIVRTLTGHRSNCISVDFHPFGEFFASGSLD---TNLK 126 (811)
Q Consensus 87 Dl~t~-------------------------------------~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D---g~I~ 126 (811)
+..-| .-++..-.|...|..+.||..|+||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 0122333488899999999999999998664 4789
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003556 127 IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (811)
Q Consensus 127 IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D 206 (811)
|+++.......-|....+.|.++.|+|...+|++++ ...|+|||+..+.++..+......|..++.||.|.-|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 999987776666766678899999999988888886 5689999999888887777777889999999999999999999
Q ss_pred CeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecCC---------ceeeeeeccccc----e
Q 003556 207 RTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPI---------RCHDAVDVGWSR----L 271 (811)
Q Consensus 207 g~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~---------~~~~~~~~~~~~----i 271 (811)
+.+..||+.-. ++...+..|...+++++||+.-.++++|++|+ +.||.-.-. -.+..+..+... +
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 99999999754 56677888999999999999999999999874 666642211 011122222211 3
Q ss_pred eEeee-cCCCEEEEEECCCeEEEE
Q 003556 272 SDLNV-HEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 272 ~~l~~-~dg~lLasg~~Dg~V~IW 294 (811)
-+..+ +...+|.+++.||+|++|
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeecccCCCceEEecCCCceEEee
Confidence 33334 456799999999999999
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.8e-20 Score=193.38 Aligned_cols=243 Identities=19% Similarity=0.347 Sum_probs=202.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.+..|++|.+.|..+++.. ..++++++|.+|+.|.++- ..+.++.+ ...+..|.-+..+..++++| ..|.|||
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG--e~i~IWD 173 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCG--EQIDIWD 173 (433)
T ss_pred hhheeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccC--ceeeecc
Confidence 4578999999999999975 4588999999999999864 46666654 35667777777777788875 4699999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
.+...++..+.--.+.|.++.|+|... .|++|..|+.|.+||+++..+++.+. ..-.-..|+|+|.+..|++|.+|..
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccccc
Confidence 999999999988888999999999765 57777799999999999998887765 2344678999998888999999999
Q ss_pred EEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEecCCCEEEE
Q 003556 167 VKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 167 I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~Las 244 (811)
++.||++.- ..+..+.+|.+.|..+.|+|.|.-+++|+.|.+|+||..+.+..-..+.. ....|.|+.|+.|.+|+++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 999999864 46777888999999999999999999999999999999988765443322 2356899999999999999
Q ss_pred EECC-CEEEEEecCC
Q 003556 245 GLHE-SLKVFSWEPI 258 (811)
Q Consensus 245 gs~d-~I~Vwd~~~~ 258 (811)
|+++ .+++|--...
T Consensus 333 GSdd~nvRlWka~As 347 (433)
T KOG0268|consen 333 GSDDGNVRLWKAKAS 347 (433)
T ss_pred cCCCcceeeeecchh
Confidence 9998 5999976543
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=5.6e-19 Score=180.29 Aligned_cols=239 Identities=19% Similarity=0.357 Sum_probs=186.3
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEE-EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 003556 57 GHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIV-RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (811)
Q Consensus 57 ~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t-~~~v-~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~ 133 (811)
...+.|.+|+|+| ...++++|+.||+|++|+++. |..+ +....|.+++.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 555777999999999999987 3333 344568999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 134 GCIHTYKGHTRGVNAIRFTPDGR--WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 134 ~~i~~~~~h~~~I~si~fspdg~--~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
+ +..+..|..+|.++.|-+... .|++|+.|.+|+.||.+....+..+. ....++++..- ..+++++..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5 566777999999999988665 89999999999999999999998887 45667777653 347888999999999
Q ss_pred EECCCCeEEEE--eCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCC--------ceeeeeecc---ccceeEeeec
Q 003556 212 WDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--------RCHDAVDVG---WSRLSDLNVH 277 (811)
Q Consensus 212 wDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--------~~~~~~~~~---~~~i~~l~~~ 277 (811)
|+++++..... ..+..-.++|++..+|+...+.|+-+ .+.|..++.. +|++..... --.+.++.+|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99987643322 12345568999999887777777655 5777777764 455432211 1123445553
Q ss_pred -CCCEEEEEECCCeEEEEEecCC
Q 003556 278 -EGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 278 -dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
....|++++.||+..+||-+..
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred cccceEEEecCCceEEEecchhh
Confidence 4579999999999999998753
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=8.1e-20 Score=202.47 Aligned_cols=242 Identities=21% Similarity=0.333 Sum_probs=209.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECC-C
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLE-E 90 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~-t 90 (811)
-...|.|++.+| +++.||+|..-|+++||++...+....+..|...|.|+.|+. ..++|++++.|.-|+|||+. +
T Consensus 458 ~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 458 SRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 445799999999 778999999999999999999999999999999999999975 35699999999999999986 4
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEEC
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGH-----TRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h-----~~~I~si~fspdg~~L~sgs~ 163 (811)
..+++++.+|...|+++.|-..| ..+++++.|..|.+--.+.......+..| +..++.++..|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 56788999999999999998877 57899999997765443322222222222 346899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCC
Q 003556 164 DNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (811)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~---h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (811)
|..|+|||+.+++..+.|++ |++....+...|.|.|||+.+.|.++.|||+-+++++....+|...|+.+.|.+|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 99999999999999999986 567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECC-CEEEEEecC
Q 003556 241 TLLCGLHE-SLKVFSWEP 257 (811)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~ 257 (811)
.|++.+.| .|-||.+..
T Consensus 697 HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeecCCceEEEEECch
Confidence 99977666 488887754
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4e-19 Score=180.34 Aligned_cols=203 Identities=26% Similarity=0.457 Sum_probs=167.8
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe----------EEE-----EEcCCCCCeEEEEEeC-CCCEEEE
Q 003556 56 SGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAK----------IVR-----TLTGHRSNCISVDFHP-FGEFFAS 118 (811)
Q Consensus 56 ~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~----------~v~-----~l~~h~~~I~sl~fsp-dg~~Las 118 (811)
..|.+.|+.+.+.+ .|+|+++|+.||.|.+||++... .+. .-.+|+-.|..+.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999976 68899999999999999997543 111 1236788899999999 4558999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC
Q 003556 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (811)
Q Consensus 119 gs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd---g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp 195 (811)
++.|.++++||..+.+....|+ ..+.|.+-+++|- .-++++|..|-.|++.|+..|...+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999999888887 5677999899982 34677788888999999999999999999999999999999
Q ss_pred C-CCEEEEEECCCeEEEEECCCC-eEEEE--------------eCCCCCCeeEEEEecCCCEEEE-EECCCEEEEEecCC
Q 003556 196 H-EFLLATGSADRTVKFWDLETF-ELIGS--------------AGPETSGVRCLTFNPDGRTLLC-GLHESLKVFSWEPI 258 (811)
Q Consensus 196 d-g~~Lasgs~Dg~I~IwDl~~~-~~l~~--------------~~~~~~~I~sl~fspdg~~Las-gs~d~I~Vwd~~~~ 258 (811)
. +..|++|+.||.|++||++.. -++.. -..|.+.+..++|+.||.++++ |.++.+++|+...+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 6 457889999999999999853 22222 2346778999999999999985 56668999999876
Q ss_pred c
Q 003556 259 R 259 (811)
Q Consensus 259 ~ 259 (811)
+
T Consensus 279 ~ 279 (397)
T KOG4283|consen 279 R 279 (397)
T ss_pred c
Confidence 4
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=9.4e-19 Score=194.67 Aligned_cols=296 Identities=18% Similarity=0.324 Sum_probs=228.5
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCC--cEEEEEECCCeEEEEECCCCc---------------------eEEE-------
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGKPN---------------------AILS------- 54 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~--~lLatgs~Dg~I~VWdl~t~~---------------------~~~~------- 54 (811)
+..++.++.||.+.|.+++|...++ .+|++++.|..|+||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3467789999999999999987554 589999999999999872111 1111
Q ss_pred ---ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEE-----EEcCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003556 55 ---LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA--KIVR-----TLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (811)
Q Consensus 55 ---l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~--~~v~-----~l~~h~~~I~sl~fspdg~~Lasgs~Dg~ 124 (811)
+.||.+.|.++.|+|.+..|++++.|.++.+|...+. --+. .+.+.........|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 2389999999999999999999999999999987654 2222 22334556889999999999999999999
Q ss_pred EEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------C--
Q 003556 125 LKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-------------------------A-- 174 (811)
Q Consensus 125 I~IwDl~~~---~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~-------------------------t-- 174 (811)
.++|-.... .....+.+|...|..++|+|.|.+|++.+.|.+-++|-.- +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999983322 2233456899999999999999999999999877775321 0
Q ss_pred -----C----------------------------------------------e---------------------------
Q 003556 175 -----G----------------------------------------------K--------------------------- 176 (811)
Q Consensus 175 -----~----------------------------------------------~--------------------------- 176 (811)
| +
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 0 0
Q ss_pred -----------------EEEEEecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003556 177 -----------------LLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 177 -----------------~i~~~~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~~l~~~~~~~~~I~sl~ 234 (811)
.++.+.+|...|++++.+|+|+++|+++.. ..|++|+..+...+..+..|.-.|+.++
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 011223566779999999999999999854 3699999999999999999999999999
Q ss_pred EecCCCEEEEEECC-CEEEEEecCCc----eeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCC
Q 003556 235 FNPDGRTLLCGLHE-SLKVFSWEPIR----CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~----~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
|||||++|++.+.| ...+|...... .+.....+...+.+..+ ++++++++++.|.+|.||...-.+
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 99999999988777 58888764321 12234444445555544 788999999999999999887764
No 139
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.4e-18 Score=183.56 Aligned_cols=287 Identities=19% Similarity=0.357 Sum_probs=221.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
..+|..+.|.+++...++||+.|..|++|.+..+ +.+..+..|...|+++.|+|+|.+|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4589999999977769999999999999987432 2344677899999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003556 87 DLE--------E--------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (811)
Q Consensus 87 Dl~--------t--------~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~ 150 (811)
-.. + ....+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 865 2 234566788999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----------cCC-------------CCeEEEEEeCCCCEEEEEEC--
Q 003556 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK----------CHE-------------GQIQCIDFHPHEFLLATGSA-- 205 (811)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~----------~h~-------------~~V~sv~fspdg~~Lasgs~-- 205 (811)
|.|-+.++++-+.|...+.+++.....+.... ... .....++|+|+|.+|++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999888877777665433222111 011 12346789999999988642
Q ss_pred --CC-----eEEEEECCC-CeEEEEeCCCCCCeeEEEEec------------------CCCEEEEEECCCEEEEEecCCc
Q 003556 206 --DR-----TVKFWDLET-FELIGSAGPETSGVRCLTFNP------------------DGRTLLCGLHESLKVFSWEPIR 259 (811)
Q Consensus 206 --Dg-----~I~IwDl~~-~~~l~~~~~~~~~I~sl~fsp------------------dg~~Lasgs~d~I~Vwd~~~~~ 259 (811)
.+ +.++|+-.. .++...+.....+...+.|+| -+-.+++++.+.+.|||.+...
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 22 335554332 223334444444444454443 3445678888999999988766
Q ss_pred eeeee-eccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 260 CHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 260 ~~~~~-~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
.+.++ ..+++.++++.+ .+|..|+.++.||...+-.++..++.
T Consensus 333 P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 333 PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 65544 678999999988 67899999999999999888876655
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=3.8e-19 Score=196.17 Aligned_cols=291 Identities=18% Similarity=0.280 Sum_probs=204.7
Q ss_pred CCCCEEE--EEEee--CCCcEEEEEECCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 15 HSSTVNC--LKIGR--KSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 15 H~~~V~~--lafsp--~~~~lLatgs~Dg~I~VWdl~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
|.-++.- +.|++ ....+|+.+.+||.|.++|..... .+.....|...|.++.|.|....|++++.|.+++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 3334443 55654 346789999999999999975432 2355668999999999999777899999999999
Q ss_pred EEECCCCeEEEE--EcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe---------------------------
Q 003556 85 LWDLEEAKIVRT--LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG--------------------------- 134 (811)
Q Consensus 85 IWDl~t~~~v~~--l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~--------------------------- 134 (811)
+||+++.+++.. +.+|...+.++||+|++. .|++|+.||.|.|||++...
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999998877 889999999999999765 79999999999999997432
Q ss_pred EEEEEecCCCCeEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEE--------ecC---CCCeEEEEEeCCCCE
Q 003556 135 CIHTYKGHTRGVNA---IRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDF--------KCH---EGQIQCIDFHPHEFL 199 (811)
Q Consensus 135 ~i~~~~~h~~~I~s---i~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~--------~~h---~~~V~sv~fspdg~~ 199 (811)
.+...+.+...|.+ +.+..|...|++++. |+.|++||++........ ..| ...+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 01112234444554 555568889999887 999999999976543332 122 234677777778899
Q ss_pred EEEEECCCeEEEEECCCCe--EEEEeCCCCC--CeeEEEEecCCCEEEEEECC-CEEEEEecCCcee-eeeeccccceeE
Q 003556 200 LATGSADRTVKFWDLETFE--LIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH-DAVDVGWSRLSD 273 (811)
Q Consensus 200 Lasgs~Dg~I~IwDl~~~~--~l~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~-~~~~~~~~~i~~ 273 (811)
|.+.+.|+.|++|++.... ++..+.++.. .-..-..+||+.+|++|+.+ ...+|.+.....- ..+..+.-.+..
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT 365 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence 9998899999999998643 3333333211 11222468999999999777 4777776643321 112222223333
Q ss_pred eee---cCCCEEEEEECCCeEEEEEecCCCceeeee
Q 003556 274 LNV---HEGKLLGCSYNQSCVGVWVVDISRIEPYTI 306 (811)
Q Consensus 274 l~~---~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~ 306 (811)
+.+ +.++++.| ++|..++||++..+-...+..
T Consensus 366 V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l~e~~~a 400 (720)
T KOG0321|consen 366 VRWLPSATTPVATC-SDDFRVKIWRLSNGLEEIYAA 400 (720)
T ss_pred EeeccccCCCceee-ccCcceEEEeccCchhhcccc
Confidence 333 45566666 999999999995554444333
No 141
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=4.5e-17 Score=178.34 Aligned_cols=288 Identities=30% Similarity=0.612 Sum_probs=233.7
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc-eEEEecCCCC-CeEEEEE-cCCCC-EEEEEEC-CCeEEE
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTS-GIDSVSF-DSSEV-LVAAGAA-SGTIKL 85 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~-~~~~l~~h~~-~V~~l~f-spdg~-~Lasgs~-DG~I~I 85 (811)
.+..|...|.++.|.+ .+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++. +++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 4678999999999998 66778888899999999998776 6777776443 7777877 78787 5555444 999999
Q ss_pred EECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEE
Q 003556 86 WDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGG 162 (811)
Q Consensus 86 WDl~t-~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~-~L~sgs 162 (811)
||+.. ......+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.+|...+.+++|+|++. .+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99998 8888889999999999999999998888885 99999999999889999999999999999999998 555558
Q ss_pred CCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEecCCC
Q 003556 163 EDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGR 240 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~-~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-l~~~~~~~~~I~sl~fspdg~ 240 (811)
.|+.|++||...+..+. .+..|.... ...|+|++.++++++.|+.+++||+..... +.....|...+.++.|+|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999999888887 677777775 448999998999999999999999987664 444466788999999999888
Q ss_pred EEEEEECC-CEEEEEecCCceeeeee--ccccceeEeeec-CCCEEEEE-ECCCeEEEEEecCCC
Q 003556 241 TLLCGLHE-SLKVFSWEPIRCHDAVD--VGWSRLSDLNVH-EGKLLGCS-YNQSCVGVWVVDISR 300 (811)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~--~~~~~i~~l~~~-dg~lLasg-~~Dg~V~IWdvd~~~ 300 (811)
.+++++.+ .+.+|+........... .+...+..+.+. ++..+..+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88876555 48999877766554443 333345555552 22455555 678999999999887
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.8e-18 Score=176.94 Aligned_cols=241 Identities=20% Similarity=0.324 Sum_probs=190.5
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~----~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (811)
.+|.+-|.|+.|.+ .|+.+|||+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46899999999998 7788999999999999996433 45556778999999999954 58899999999999999
Q ss_pred ECC---------CCeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEE------EEEe-------cC
Q 003556 87 DLE---------EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCI------HTYK-------GH 142 (811)
Q Consensus 87 Dl~---------t~~~v~~l~~h~~~I~sl~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i------~~~~-------~h 142 (811)
.-. ......++......|+.++|.|. |-.+|+++.||.|+||+...-..+ ..++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752 11234566777889999999995 558999999999999987543222 2222 35
Q ss_pred CCCeEEEEEcC---CCCEEEEEECC-----CeEEEEECCCC----eEEEEEecCCCCeEEEEEeCC----CCEEEEEECC
Q 003556 143 TRGVNAIRFTP---DGRWVVSGGED-----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPH----EFLLATGSAD 206 (811)
Q Consensus 143 ~~~I~si~fsp---dg~~L~sgs~D-----g~I~IwDl~t~----~~i~~~~~h~~~V~sv~fspd----g~~Lasgs~D 206 (811)
..+..|+.|+| ...+|+.|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 66788999997 34578887765 47888876543 345567789999999999997 3589999999
Q ss_pred CeEEEEECCC--------------------CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 207 RTVKFWDLET--------------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 207 g~I~IwDl~~--------------------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
| |+||.++. -+.+..+..|.+.|..+.|+-.|..|++.++| .+++|.-
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 99999873 12455678899999999999999999977666 4888854
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.1e-19 Score=178.48 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=192.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEEC
Q 003556 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~I~sl~fsp--dg~~Lasgs~Dg~I~IwDl 130 (811)
..|.+.|.++...-.|+.|++++.|++|+|+.++.. +.+.++.+|.+++..++|-. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888888888889999999999999999999754 57889999999999999976 8999999999999999998
Q ss_pred CCCeE--EEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCC---C---
Q 003556 131 RKKGC--IHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPH---E--- 197 (811)
Q Consensus 131 ~~~~~--i~~~~~h~~~I~si~fsp--dg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~V~sv~fspd---g--- 197 (811)
.+++- ...+..|...|++++|.| .|-.|++++.||.|.+++.+.. .......+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87743 344567999999999999 4678999999999999988754 233345678999999999995 4
Q ss_pred --------CEEEEEECCCeEEEEECCCCe--EEEEeCCCCCCeeEEEEecCC----CEEEEEECC-CEEEEEecCCceee
Q 003556 198 --------FLLATGSADRTVKFWDLETFE--LIGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVFSWEPIRCHD 262 (811)
Q Consensus 198 --------~~Lasgs~Dg~I~IwDl~~~~--~l~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vwd~~~~~~~~ 262 (811)
+.|++|+.|..|+||+...+. .-..+.+|.+.|+.++|.|.- .+|++++.| .+.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 569999999999999998753 344588999999999999963 578888777 57888765321100
Q ss_pred ---eeeccccceeEeee-cCCCEEEEEECCCeEEEEEecC
Q 003556 263 ---AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 263 ---~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.+..--..+..+.+ ..|.+|++++.|+.|.+|.-+.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 01111111222322 6799999999999999997655
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.6e-19 Score=188.25 Aligned_cols=241 Identities=22% Similarity=0.402 Sum_probs=187.0
Q ss_pred EEEEEEeeC------CCcEEEEEECCCeEEEEECCCC---ceEEE------------------ecCCCCCeEEEEEcCC-
Q 003556 19 VNCLKIGRK------SSRVLVTGGEDHKVNLWAIGKP---NAILS------------------LSGHTSGIDSVSFDSS- 70 (811)
Q Consensus 19 V~~lafsp~------~~~lLatgs~Dg~I~VWdl~t~---~~~~~------------------l~~h~~~V~~l~fspd- 70 (811)
..|++|.-. -++++|.|+.|..|.|||+.-. .+... -.+|+..|..++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 356776431 2579999999999999998321 11111 2369999999999875
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003556 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (811)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si 149 (811)
.+.||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|++........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4589999999999999999999999999999999999999965 589999999999999999533332222245789999
Q ss_pred EEcCC-CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeE--EEEeC
Q 003556 150 RFTPD-GRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFEL--IGSAG 224 (811)
Q Consensus 150 ~fspd-g~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~--l~~~~ 224 (811)
+|.|. ...++++..||+|+-+|+|.. +++.+++.|.+.|.++++++. -.+|++++.|+.|++|++..-.. +..-.
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 99984 456788889999999999975 899999999999999999986 45899999999999999875433 22222
Q ss_pred CCCCCeeEEEEecCCCE-EEEEECC-CEEEEEecCCc
Q 003556 225 PETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIR 259 (811)
Q Consensus 225 ~~~~~I~sl~fspdg~~-Lasgs~d-~I~Vwd~~~~~ 259 (811)
-.-+...|.++.|+-.+ |+.|+.. .++||+.-...
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22234677788887544 4555555 49999986543
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.6e-18 Score=174.71 Aligned_cols=247 Identities=21% Similarity=0.383 Sum_probs=190.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEE
Q 003556 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWD 129 (811)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t----~~~v~~l~~h~~~I~sl~fsp--dg~~Lasgs~Dg~I~IwD 129 (811)
.+|.+-|.|+.|.+.|+.+++|+.|++|+|||... ..+....+.|.+.|..+.|-+ .|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999753 346677889999999999965 689999999999999997
Q ss_pred CCC---------CeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC------eEEEEEe-------cCC
Q 003556 130 IRK---------KGCIHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG------KLLHDFK-------CHE 185 (811)
Q Consensus 130 l~~---------~~~i~~~~~h~~~I~si~fsp--dg~~L~sgs~Dg~I~IwDl~t~------~~i~~~~-------~h~ 185 (811)
=.. .....++......|+.+.|.| -|-.|++++.||.++||+.-.. .+.+++. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 123445666778899999999 4778999999999999987543 3333333 245
Q ss_pred CCeEEEEEeCC---CCEEEEEECC-----CeEEEEECCC----CeEEEEeCCCCCCeeEEEEecC----CCEEEEEECCC
Q 003556 186 GQIQCIDFHPH---EFLLATGSAD-----RTVKFWDLET----FELIGSAGPETSGVRCLTFNPD----GRTLLCGLHES 249 (811)
Q Consensus 186 ~~V~sv~fspd---g~~Lasgs~D-----g~I~IwDl~~----~~~l~~~~~~~~~I~sl~fspd----g~~Lasgs~d~ 249 (811)
.+..|+.|+|. ..+||.|+.+ +.++||.... ...+.++..|..+|++++|.|+ -..|++++.++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 56789999984 5688988866 4788887643 3455667899999999999996 35788999999
Q ss_pred EEEEEecCCc--------------------eeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 250 LKVFSWEPIR--------------------CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 250 I~Vwd~~~~~--------------------~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
|+||.+...+ ....++.+...+..+.+ -.|.+|++.+.||+|++|...-...-
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 9999998522 01123344445555555 45889999999999999977665443
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=186.11 Aligned_cols=252 Identities=13% Similarity=0.297 Sum_probs=208.8
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE--EecCCC-CCeEEEEEcCCCCEEEEEECC
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHT-SGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~D 80 (811)
|+..+++.+.--..+|.+++|.|++...+++++....++.||+.+.+... ...++. ..+.....++++++|+..+..
T Consensus 245 k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 245 KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC
Confidence 44557777777889999999999776689999999999999998776543 334444 467778889999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEE
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVV 159 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~-~I~si~fspdg~~L~ 159 (811)
|.|.+....+++.+.+++ ..+.|..++|+.+++.|++++.+|.|++||++...+++++....+ .-++++.+++|.||+
T Consensus 325 G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred ceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEE
Confidence 999999999999999888 678899999999999999999999999999999999999874322 235677788999999
Q ss_pred EEECCCeEEEEECCC------CeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCC---CC
Q 003556 160 SGGEDNTVKLWDLTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPE---TS 228 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t------~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~l~~~~~~---~~ 228 (811)
+|+..|.|.|||..+ .+.+..+..-...|+++.|++++.+||.++. +..+++.-+.+......+... -+
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 999999999999653 3556666666778999999999999998874 567898888877666555433 45
Q ss_pred CeeEEEEecCCCEEEEEECC-CEEEEEec
Q 003556 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
.++|++|+|.|-+|++|.++ .+.+|.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 68999999999999999877 48888764
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=181.96 Aligned_cols=202 Identities=23% Similarity=0.484 Sum_probs=164.4
Q ss_pred cCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECC----------------CCeEEEEEcCCCCCeEEEEEeCCCC-EE
Q 003556 56 SGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLE----------------EAKIVRTLTGHRSNCISVDFHPFGE-FF 116 (811)
Q Consensus 56 ~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~----------------t~~~v~~l~~h~~~I~sl~fspdg~-~L 116 (811)
-+|.+.++.+.-.+- ..+.++-+..|.|+|||+. ..+++.++.+|...-+.++|+|... .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 357777777776654 4566777889999999974 2356788999999999999999433 58
Q ss_pred EEEECCCcEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeE
Q 003556 117 ASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQ 189 (811)
Q Consensus 117 asgs~Dg~I~IwDl~~~~~i---~~~~~h~~~I~si~fspd-g~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~V~ 189 (811)
++|..-+.|++|...++.-. ..+.+|...|-.++|+|. ...|++++.||+|+|||+|.+ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 88888889999998876532 235679999999999995 457899999999999999988 3343 377999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEecCC--CEEEEEECCCEEEEEecCC
Q 003556 190 CIDFHPHEFLLATGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPI 258 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~~---~~~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~ 258 (811)
.+.|+.+..+||+|+.||+++|||++. ++++..+..|..+|++|.|+|.. -+.++|.++.|.+||+...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999988999999999999999986 46788999999999999999853 3444556668999998643
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.5e-16 Score=172.38 Aligned_cols=288 Identities=31% Similarity=0.608 Sum_probs=229.4
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEEC-CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIK 84 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~-Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~ 84 (811)
..+..+..|...|.+++|+|+ +.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. ++++++.|+.|.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 456778899999999999994 557777775 99999999998899999999999999999999998 555558999999
Q ss_pred EEECCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003556 85 LWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 85 IWDl~t~~~v~-~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~~~~h~~~I~si~fspdg~~L~sgs 162 (811)
+||...+..+. .+.+|.... ...|++++.++++++.|+.+++||+..... +..+..|...+.++.|.|++..+++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 99999888888 688888875 448999998999999999999999986664 555567889999999999888898899
Q ss_pred CCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCC
Q 003556 163 EDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (811)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~--~h~~~V~sv~fspdg~~Lasg-s~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (811)
.|+.+.+||........... .|...+..+.|.+++..++.+ ..|+.+.+|++............ ..+..+.+.+ .
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 381 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D 381 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C
Confidence 99899999999887777665 677789999994332455555 68899999999887733333322 2288899988 5
Q ss_pred CEEEE-E-ECCCEEEEEecCCceeeeeecc-ccceeEeeecCCCEEEEEECCCeEEEEEecC
Q 003556 240 RTLLC-G-LHESLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 240 ~~Las-g-s~d~I~Vwd~~~~~~~~~~~~~-~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
..+.. + .++.+.+|+............. ..........++..++.++.++.+.+|+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 33333 2 3446999999887776655444 3333344447788888899999999999998
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.9e-18 Score=171.77 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=190.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 003556 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG 141 (811)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~ 141 (811)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCC----CeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 142 HTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 142 h~~~I~si~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~----~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
...+|+...|+|... .+++.-.+..-.+.++..++....-....+ .-.+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 788999999999433 333332333344555544322111111111 123446899999999999999999999999
Q ss_pred CeEEEEeCCCC-CCeeEEEEecCCCEEEEEECC-CEEEEEecCCce-------------eeee-eccccceeEeeecCCC
Q 003556 217 FELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-------------HDAV-DVGWSRLSDLNVHEGK 280 (811)
Q Consensus 217 ~~~l~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~-------------~~~~-~~~~~~i~~l~~~dg~ 280 (811)
.+++..++... ..|..+.|+..|++|+..+.| .|+.|+...... .+.+ ...|.. +.+..+|.
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~--ccfs~dge 262 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK--CCFSGDGE 262 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh--eeecCCcc
Confidence 99999887665 789999999999999988766 599998763211 1111 345654 44556888
Q ss_pred EEEEEEC-CCeEEEEEecCCCceeeeeccc
Q 003556 281 LLGCSYN-QSCVGVWVVDISRIEPYTIGSV 309 (811)
Q Consensus 281 lLasg~~-Dg~V~IWdvd~~~~~p~~~~~~ 309 (811)
++++++. ...++||.-.++.+.....+..
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCc
Confidence 8877654 4689999999998887665554
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.5e-18 Score=177.16 Aligned_cols=240 Identities=25% Similarity=0.438 Sum_probs=191.3
Q ss_pred cCCCCEEEEEEeeC---CCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECC
Q 003556 14 AHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 14 ~H~~~V~~lafsp~---~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~ 89 (811)
.|...-..++|+-+ +.-++|+||.-|.|+|.|+.++++...+.+|...|+.|.|+|+. +++++++.|..|++||++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888898764 34589999999999999999999999999999999999999975 689999999999999999
Q ss_pred CCeEEEEE---cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE------E-------------------E---E
Q 003556 90 EAKIVRTL---TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC------I-------------------H---T 138 (811)
Q Consensus 90 t~~~v~~l---~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~------i-------------------~---~ 138 (811)
+..++..+ .+|.+.|.++.|+++|.+|++++.|..|++|++...+. . . +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99998877 46999999999999999999999999999999973221 0 0 1
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCC-------------eEEEEEecCCCCeEEEEE--eCCCCEEEE
Q 003556 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL-TAG-------------KLLHDFKCHEGQIQCIDF--HPHEFLLAT 202 (811)
Q Consensus 139 ~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl-~t~-------------~~i~~~~~h~~~V~sv~f--spdg~~Las 202 (811)
-.-|...|.|+.|- |+++++=+-++.|..|.. .-+ ..+.++.-....|+-+.| .|-++.||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12366777788886 679999999999999987 211 233444445566776655 556889999
Q ss_pred EECCCeEEEEECCCCeEEE--Ee--CCCCCCeeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 203 GSADRTVKFWDLETFELIG--SA--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~l~--~~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
|...|.|++||++..++.. ++ ......|+..+|+.||.+|+..++++ .||.|+
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~-~Vwrwd 381 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG-TVWRWD 381 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC-cEEEEE
Confidence 9999999999999866521 11 22356789999999999998877775 455554
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=2e-18 Score=190.62 Aligned_cols=251 Identities=20% Similarity=0.324 Sum_probs=193.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEE--ecCCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS--LSGHTSGIDSVSFDSSE-VLVAAGAASGTIK 84 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~--l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~ 84 (811)
++..+.+|...|..++|.| +...|++++.|.++++||+.+.+.+.. +.||...|.+++|.+.. ..|++|+.||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 4678889999999999999 888999999999999999998888776 88999999999999865 4788999999999
Q ss_pred EEECCCCe---------------------------EEEEEcCCCCCeEE---EEEeCCCCEEEEEEC-CCcEEEEECCCC
Q 003556 85 LWDLEEAK---------------------------IVRTLTGHRSNCIS---VDFHPFGEFFASGSL-DTNLKIWDIRKK 133 (811)
Q Consensus 85 IWDl~t~~---------------------------~v~~l~~h~~~I~s---l~fspdg~~Lasgs~-Dg~I~IwDl~~~ 133 (811)
|||+.-.. .+.....+...|.+ +.+..|...||+++. |+.|++||+++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99985321 11122234445555 556668889999887 999999999976
Q ss_pred eEEEEE--------ecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCCC--CeEEEEEeCCCC
Q 003556 134 GCIHTY--------KGH---TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEG--QIQCIDFHPHEF 198 (811)
Q Consensus 134 ~~i~~~--------~~h---~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~--~V~sv~fspdg~ 198 (811)
...... ..| ...+.++.....|.+|++.+.|+.|++|++..-. .+..+.++.. .-..-..+|++.
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 554332 123 3357888888889999999999999999998642 3334443221 122335689999
Q ss_pred EEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEecC--CCEEEEEECC-CEEEEEecCCce
Q 003556 199 LLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPIRC 260 (811)
Q Consensus 199 ~Lasgs~Dg~I~IwDl~~~~-~l~~~~~~~~~I~sl~fspd--g~~Lasgs~d-~I~Vwd~~~~~~ 260 (811)
+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. +..+.+ ++| +++||++..+-+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDFRVKIWRLSNGLE 395 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee-ccCcceEEEeccCchh
Confidence 99999999999999998755 45567788899999999874 555555 566 799999965433
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=4.4e-18 Score=187.45 Aligned_cols=281 Identities=16% Similarity=0.318 Sum_probs=216.7
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (811)
.|..++|-||+..++++++ ..+.+||.+.|..+..+++|.+.|+|++|+.+|+.+++|+.|..|.+|.-.-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY 90 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence 7999999998777666654 46999999999999999999999999999999999999999999999985432222 22
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (811)
Q Consensus 98 ~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (811)
.|.+.|.|+.|+|-...|++++.. ..-+|...... +...+ ....+.+.+|..||.+|+.|-.+|+|.+-+-. ++.
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 499999999999999999999864 36788866443 33333 34568899999999999999999999998643 443
Q ss_pred EEEEe---cCCCCeEEEEEeCCC-----CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-
Q 003556 178 LHDFK---CHEGQIQCIDFHPHE-----FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (811)
Q Consensus 178 i~~~~---~h~~~V~sv~fspdg-----~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (811)
...+. +...+|++++|+|.. ..+++.....++.+|.+. |+.+..-+...-...|+.+.++|.|+..|+.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 33333 356789999999963 488899999999999886 66666555555667899999999999877555
Q ss_pred CEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCceeeeecc
Q 003556 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~ 308 (811)
.+++|.-+..+.-.+-+ .-+-+..+.. ++++.++.|..||+|..|++-.+.+..++...
T Consensus 245 ~L~~fTR~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~R 304 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDR 304 (1081)
T ss_pred ceEEEeecCeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHh
Confidence 68888765443322222 1122333333 78999999999999999999888776655443
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.6e-17 Score=180.05 Aligned_cols=290 Identities=18% Similarity=0.324 Sum_probs=222.9
Q ss_pred ceeEEEEecCCC-CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 6 AYKLQEFVAHSS-TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 6 ~~ki~~~~~H~~-~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
.+....+.++.+ .|-.++|++ +++ |++.+-+|.|.-||+.+++....+....+.|++++.+|.+..++.|+.||.+.
T Consensus 58 w~~~~vi~g~~drsIE~L~W~e-~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWAE-GGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY 135 (691)
T ss_pred ceeeEEEecCCCCceeeEEEcc-CCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE
Confidence 344556666654 799999996 554 78888899999999999999999999999999999999999999999999888
Q ss_pred EEECCCCeEEE--EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCC
Q 003556 85 LWDLEEAKIVR--TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------GHTRGVNAIRFTPD 154 (811)
Q Consensus 85 IWDl~t~~~v~--~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~--------~h~~~I~si~fspd 154 (811)
.++...++... .+...++.+.++.|+|++..++.|+.||.|++||...+..++... +...-|+++.|-.+
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd 215 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD 215 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence 88888877543 344567899999999999999999999999999999988776322 12234778888855
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE----EEEeCCCCCCe
Q 003556 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGV 230 (811)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~----l~~~~~~~~~I 230 (811)
..|++|...|.|.+||...+.++..+..|.+.|.+++..+++.++++++.|+.|.-|...+.+. ......|...+
T Consensus 216 -~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 216 -STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred -CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 4699999999999999999999999999999999999999999999999999999998776533 23346778889
Q ss_pred eEEEEecCCCEEEEEECCC-EEEEEecCCceeeee-eccccceeEeeecCCCEEEEEECCCeEEEEEecCCC
Q 003556 231 RCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAV-DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~-~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
++++..++ .|++|+.+. +.+-.....+..+.. ......-..+.....+.|..-..+..+.+|.+...-
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence 99999877 777776663 333332221111111 111111111222344666666777788888777763
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-18 Score=185.84 Aligned_cols=218 Identities=17% Similarity=0.320 Sum_probs=187.4
Q ss_pred EEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
.|++... -..++++||..+.|+|||+...-+.+.+++|+..|+++.++....|||+++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 3444433 336899999999999999997778888999999999999999999999999999999999999887777764
Q ss_pred C-CCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 003556 100 H-RSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG 175 (811)
Q Consensus 100 h-~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~-~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~ 175 (811)
. ...+.-+.|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...|+|+| +...|++.+.|..|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 3 34566899999887 4678899999999999987776654 57999999999999 4567889999999999999987
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCC
Q 003556 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDG 239 (811)
Q Consensus 176 ~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg 239 (811)
+....+. ...+...++|.++|.+|++|...|.|..||++.. .++..+..|...|++++|-+.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7766665 4678999999999999999999999999999864 5788888999999999998875
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1e-17 Score=178.76 Aligned_cols=239 Identities=19% Similarity=0.307 Sum_probs=184.2
Q ss_pred CeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCe---EEE------------------EEcCCCCCeEEEEEeCC
Q 003556 61 GIDSVSFDS-------SEVLVAAGAASGTIKLWDLEEAK---IVR------------------TLTGHRSNCISVDFHPF 112 (811)
Q Consensus 61 ~V~~l~fsp-------dg~~Lasgs~DG~I~IWDl~t~~---~v~------------------~l~~h~~~I~sl~fspd 112 (811)
.-.|++|.. .|+|+|.|+.+..|.|||+.--. +.. ...+|.+.|.++.|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 346777743 36799999999999999984211 111 12368888889999875
Q ss_pred C-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeE
Q 003556 113 G-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQ 189 (811)
Q Consensus 113 g-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~V~ 189 (811)
- +.||+|+.|.+|++||+.++++..++..|...|.++.|+| ...+|++|+.|+++.+.|+|.... -..++ ..+.|-
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VE 333 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVE 333 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceE
Confidence 4 4799999999999999999999999999999999999999 567899999999999999995322 22233 467899
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEecCCCE-EEEEECC-CEEEEEecCCceeee--
Q 003556 190 CIDFHPH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIRCHDA-- 263 (811)
Q Consensus 190 sv~fspd-g~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~-Lasgs~d-~I~Vwd~~~~~~~~~-- 263 (811)
.++|+|. ...+++++.||+|+-+|++.. +++.++..|.++|.+|++++.-.. +++++.+ .+++|++.......+
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999996 457788889999999999974 899999999999999999987554 4455444 699999986544222
Q ss_pred eeccccceeEeee--cCCCEEEEEECCCeEEEEEecCCC
Q 003556 264 VDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 264 ~~~~~~~i~~l~~--~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
-....+++.++.. +.-.+|+.|+..+.++|||+-+..
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 2222233444433 445788899999999999987754
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=8.6e-18 Score=179.71 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=202.8
Q ss_pred CcccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003556 2 TTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (811)
Q Consensus 2 s~kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (811)
+.+..-.+.-|..|+.+|.++.|+|.+...+++.+.||+|++-|++... .+..+......+..+.|+.+...++.+..
T Consensus 220 ~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 220 QEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred CCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec
Confidence 4456667788999999999999999888899999999999999997653 34444435567788889888888888888
Q ss_pred CCeEEEEECCCCeE-EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeE----EEEEecCCCCeEEEEEcC
Q 003556 80 SGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC----IHTYKGHTRGVNAIRFTP 153 (811)
Q Consensus 80 DG~I~IWDl~t~~~-v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~----i~~~~~h~~~I~si~fsp 153 (811)
-|...+||++++.. ...+.-|...|.+++++|... +||+++.|++.+|||++.-.. +.....|...|.+..|+|
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP 379 (498)
T ss_pred ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence 88999999987654 667777999999999999766 799999999999999985321 222335999999999999
Q ss_pred CCCEEEEEECCCeEEEEECC----CCeEEEEEecCC----C--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003556 154 DGRWVVSGGEDNTVKLWDLT----AGKLLHDFKCHE----G--QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~----t~~~i~~~~~h~----~--~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~ 223 (811)
.+-.|++.+.|..|+|||.. .-.....+. |. . ......|.|+..++++|-.-..|-|||-..++.+..+
T Consensus 380 s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 380 SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred CCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 88789999999999999983 222233332 22 1 2345789999999999999999999999999988775
Q ss_pred CCC-CCCeeEE-EEecCCCEEEEEECCCEEEEEecC
Q 003556 224 GPE-TSGVRCL-TFNPDGRTLLCGLHESLKVFSWEP 257 (811)
Q Consensus 224 ~~~-~~~I~sl-~fspdg~~Lasgs~d~I~Vwd~~~ 257 (811)
... ...|.++ .|+|-+..+++|+....+||-|..
T Consensus 459 ~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCccccccccceeecccccceeccCCccceEEEEec
Confidence 443 3356654 799999888888777777876654
No 157
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=6.4e-19 Score=188.33 Aligned_cols=287 Identities=18% Similarity=0.223 Sum_probs=243.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~ 138 (811)
.-.-+.+.+..+|++++.|+.-|.|..+|+.+++....+. -...|.++.|-.+.++||++ ....++||| ..|..++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 3455779999999999999999999999999999988887 45678899999888888887 467899999 56777888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003556 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (811)
Q Consensus 139 ~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 218 (811)
++.|. .|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.....+
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 87554 59999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEE--
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV-- 295 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWd-- 295 (811)
++..+..|.++|.+|++.++|+|+++++-| .++|||+........+.. -.+...+.+.+..+||++..+ .|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~-~v~iw~d~ 362 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGD-HVQIWKDA 362 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCC-eeeeehhh
Confidence 999999999999999999999999976555 799999988765544433 233455666677788887666 899992
Q ss_pred --ecCCCceeeeeccceeeccccccccCCCCCccccccCccccccCCccccCCCccccc
Q 003556 296 --VDISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVK 352 (811)
Q Consensus 296 --vd~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (811)
..++.-.||+.+.... -.+...++|++..+.+++..++.+.+.+++++||+|....
T Consensus 363 ~~~s~~~~~pYm~H~~~~-~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~ 420 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGG-PVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLED 420 (545)
T ss_pred hcCCCCCCcchhhhccCc-ccccceeccHHHeeeccccCCceeEeccCCCCCCcchhcc
Confidence 2246678888877655 4567778999999999999999999999999999987654
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=167.97 Aligned_cols=236 Identities=16% Similarity=0.280 Sum_probs=189.7
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCC---CceEE---------EecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAIL---------SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t---~~~~~---------~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
-.+.++|.||-..+++..-...++++|.+.+ |.... .-..|.-.|..+-....+.+|++++.|..|.+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 5678999998777788777778999998732 21111 11236667778888889999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---CC-----eEEEEEecCCCCeEEEEEcCCCCE
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KK-----GCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~---~~-----~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
|++. |+.+..+......-+..+.+|+|+++++++..-.|++|.+- .| ..+..+++|...|..++|+++...
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 9998 99999988777777888999999999999999999999863 22 245678899999999999999999
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEE----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-CC
Q 003556 158 VVSGGEDNTVKLWDLTA-------GKLLHDF----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GP 225 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~----~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~ 225 (811)
+++.+.||.+++||+.- .+.+.++ ....+.-..+.++|+|..||.+. ...+++|..++++....+ ..
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh
Confidence 99999999999999852 1222222 11233345899999999988876 457999999998876665 56
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCEEEEEe
Q 003556 226 ETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (811)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (811)
|...|.+++|+++|++++++++..++++.-
T Consensus 372 h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 372 HSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred hcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 789999999999999999999988888763
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=6.3e-17 Score=180.27 Aligned_cols=287 Identities=17% Similarity=0.309 Sum_probs=220.5
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc--eEE-----EecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AIL-----SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~--~~~-----~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
.||.+.|.++.|+| .+..|.+++.|.++.+|...+.. .+. ...+.........|+|+++.+++-+..|..++
T Consensus 264 ~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 39999999999999 55678899999999999875542 222 22344567899999999999999999999999
Q ss_pred EECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-------------------------C-----
Q 003556 86 WDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-------------------------K----- 132 (811)
Q Consensus 86 WDl~t~---~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~-------------------------~----- 132 (811)
|...+. .....+.||.+.|.+++|+|.|+||++.+.|-+-+++-.. +
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983332 2344567899999999999999999999998766655221 0
Q ss_pred -----CeE------------------------------------------------------------------------
Q 003556 133 -----KGC------------------------------------------------------------------------ 135 (811)
Q Consensus 133 -----~~~------------------------------------------------------------------------ 135 (811)
.+.
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 000
Q ss_pred ---------------EEEEecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEeC
Q 003556 136 ---------------IHTYKGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (811)
Q Consensus 136 ---------------i~~~~~h~~~I~si~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp 195 (811)
++++.+|...|++++.+|+|+++++++.. ..|++|+..+...+..+.+|.-.|+.++|+|
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 00112577889999999999999998764 3699999999888889999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE----EEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCC--ceeeee--ec
Q 003556 196 HEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--RCHDAV--DV 266 (811)
Q Consensus 196 dg~~Lasgs~Dg~I~IwDl~~~~~----l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--~~~~~~--~~ 266 (811)
||++|++.+.|+++.+|....... ....+.|..-|.+..|+|++.++++++.| .++||..... ++...+ -.
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 999999999999999998754321 23367888889999999999999999887 6999998776 332221 01
Q ss_pred cccceeEeee------cCCCEEEEEECCCeEEEEEecCCC
Q 003556 267 GWSRLSDLNV------HEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 267 ~~~~i~~l~~------~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
....++.+.+ ..+.++++|.+.|.|.+|...-..
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 1122333332 234588999999999999876433
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.3e-17 Score=179.03 Aligned_cols=262 Identities=18% Similarity=0.265 Sum_probs=199.2
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (811)
.|..+.|...+.-.++..+.|..+++|.-... +....-....+.-.|++......|+++|+..+.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 48889998633223334467888999975322 2222112122345566666666899999999999999999888889
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCE-EEEEECCCeEEEEECC
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFTPDGRW-VVSGGEDNTVKLWDLT 173 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h-~~~I~si~fspdg~~-L~sgs~Dg~I~IwDl~ 173 (811)
.+++|...|+++.++....|||+++..|.|.|..+.++.....|... ...|.-+.|+|..++ |.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999999999999999999988877777643 344668999997664 5678999999999998
Q ss_pred CCeEEEEEe-cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CE
Q 003556 174 AGKLLHDFK-CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (811)
Q Consensus 174 t~~~i~~~~-~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (811)
....++.+. .|..+...++|+| +..+|++.+.|..|.+||+........+. ...+...++|.++|.+|++|..+ .+
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceE
Confidence 777666654 5899999999999 56789999999999999999766655543 34678999999999999999766 48
Q ss_pred EEEEecCCc-eeeeeeccccceeEeeecCCC
Q 003556 251 KVFSWEPIR-CHDAVDVGWSRLSDLNVHEGK 280 (811)
Q Consensus 251 ~Vwd~~~~~-~~~~~~~~~~~i~~l~~~dg~ 280 (811)
..||+...+ ...++..+-..+.++.+...+
T Consensus 275 i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEecccCCCCceEeeecccceeEEEeeecc
Confidence 888887544 344444444445555554443
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2e-18 Score=202.06 Aligned_cols=244 Identities=23% Similarity=0.374 Sum_probs=198.7
Q ss_pred CCCEEEEEEeeCCCc---EEEEEECCCeEEEEECCC------CceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEE
Q 003556 16 SSTVNCLKIGRKSSR---VLVTGGEDHKVNLWAIGK------PNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKL 85 (811)
Q Consensus 16 ~~~V~~lafsp~~~~---lLatgs~Dg~I~VWdl~t------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~I 85 (811)
...-++++|++.+.. +||.|.+||.|.+||... ...+.....|++.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346788999986655 699999999999999854 234556778999999999999655 9999999999999
Q ss_pred EECCCCeEEEEEc--CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCC--CeEEEEEcCCCC-EEE
Q 003556 86 WDLEEAKIVRTLT--GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTR--GVNAIRFTPDGR-WVV 159 (811)
Q Consensus 86 WDl~t~~~v~~l~--~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~--~I~si~fspdg~-~L~ 159 (811)
||+...+.-.+.. ...+.|.+++|+..-. .|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444432 2457899999997544 688899999999999999988877775554 478999999754 566
Q ss_pred EEECCC---eEEEEECCCC-eEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003556 160 SGGEDN---TVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 160 sgs~Dg---~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~ 234 (811)
+++.|. .|.+||+|.- ..++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.....++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 665543 5999999854 4667788999999999999976 8999999999999999999999999998889999999
Q ss_pred EecCCC-EEEEE-ECCCEEEEEecCCc
Q 003556 235 FNPDGR-TLLCG-LHESLKVFSWEPIR 259 (811)
Q Consensus 235 fspdg~-~Lasg-s~d~I~Vwd~~~~~ 259 (811)
|+|... .++++ .++.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999876 44444 45679999987644
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=5.2e-17 Score=167.54 Aligned_cols=290 Identities=20% Similarity=0.397 Sum_probs=214.8
Q ss_pred ccceeEE--EEecCCCCEEEEEEee----CCCcEEEEEECCCeEEEEECCCCceE---EEec--CCCCCeEEEEEcCC--
Q 003556 4 KRAYKLQ--EFVAHSSTVNCLKIGR----KSSRVLVTGGEDHKVNLWAIGKPNAI---LSLS--GHTSGIDSVSFDSS-- 70 (811)
Q Consensus 4 kr~~ki~--~~~~H~~~V~~lafsp----~~~~lLatgs~Dg~I~VWdl~t~~~~---~~l~--~h~~~V~~l~fspd-- 70 (811)
|+.++.. -...|..+|..++|.+ +....++|.|.+ .+.+|.......+ +.+. .|......++|+-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 3445443 3457889999999985 344577777764 6888887543322 2222 36677888888543
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE---ecCCC
Q 003556 71 --EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY---KGHTR 144 (811)
Q Consensus 71 --g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~---~~h~~ 144 (811)
..++|+|+.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++..|+..+ .+|..
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 3489999999999999999999999999999999999999976 58999999999999999999998887 46999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----------------------------EEecCCCCeEEEEEeCC
Q 003556 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH----------------------------DFKCHEGQIQCIDFHPH 196 (811)
Q Consensus 145 ~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~----------------------------~~~~h~~~V~sv~fspd 196 (811)
.|.++.|+++|.+|++++.|..|++|++...+... +-..|...|-|+.|-
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 99999999999999999999999999997321100 011244455555554
Q ss_pred CCEEEEEECCCeEEEEECC-CCe-------------EEEEeCCCCCCeeEEEE--ecCCCEEEEEECC-CEEEEEecCCc
Q 003556 197 EFLLATGSADRTVKFWDLE-TFE-------------LIGSAGPETSGVRCLTF--NPDGRTLLCGLHE-SLKVFSWEPIR 259 (811)
Q Consensus 197 g~~Lasgs~Dg~I~IwDl~-~~~-------------~l~~~~~~~~~I~sl~f--spdg~~Lasgs~d-~I~Vwd~~~~~ 259 (811)
|.++++-+-++.|..|-.- -.+ .+..+.-....|+-+.| .+-++.|+.|... .+.+|+++...
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 5689998889999999872 111 23334444556666655 5568899988766 59999998765
Q ss_pred eeeee----eccccceeEeee-cCCCEEEEEECCCeEEEEEe
Q 003556 260 CHDAV----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 260 ~~~~~----~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
..... ......+....+ .||.+|+...+|++|.-||.
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 53221 223344444444 68899999999999999975
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=4.5e-17 Score=178.77 Aligned_cols=126 Identities=21% Similarity=0.408 Sum_probs=107.5
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce--E----EEecCCCCCeEEEEEcCCCCEEEEEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--I----LSLSGHTSGIDSVSFDSSEVLVAAGA 78 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~--~----~~l~~h~~~V~~l~fspdg~~Lasgs 78 (811)
+...+-.+.+|.+.|+.+.|+|-...+||||+.|..|+||.+..+-. + ..+.+..-.|.|+.|+|...-|+..+
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 34467788999999999999998888999999999999999964322 1 12223345789999999877666767
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003556 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl 130 (811)
..|.++|||+.+++.+..+.+|.+.|.+..|+.||..+++++.|..|+|||.
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCC
Confidence 7999999999999999999999999999999999999999999999888885
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=8.6e-18 Score=183.88 Aligned_cols=250 Identities=22% Similarity=0.332 Sum_probs=196.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC--------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (811)
++..|.+.|+.++|+| ....|++++.||+|++|++++ -+.+.++.+|.++|.|+++..++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 7888999999999999 677899999999999999932 3578899999999999999999999999999999
Q ss_pred EEEEECCCC----------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEE
Q 003556 83 IKLWDLEEA----------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIR 150 (811)
Q Consensus 83 I~IWDl~t~----------~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h--~~~I~si~ 150 (811)
|+.|++... .....+.||.+.++.+++++....|++++.||++++|+...... .+|... .+.-.++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999966411 23456789999999999999999999999999999999876655 333221 22234555
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 151 FTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCH-------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (811)
Q Consensus 151 fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~ 222 (811)
|-... ...++...-+.--++|...+..+..+... ...+..+.++|.+.+.+++..|+.|+++|..++++++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 22333333333344444444444444321 13477889999999999999999999999999999999
Q ss_pred eCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceee
Q 003556 223 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 262 (811)
Q Consensus 223 ~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~ 262 (811)
...|...++++++.|+|-+|++++.+ .+.+|..+...|..
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999877 59999887766643
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.7e-18 Score=198.97 Aligned_cols=279 Identities=18% Similarity=0.336 Sum_probs=210.2
Q ss_pred EEEEeeCCCcEEEEE----------ECCCeEEEEECCC--Cc----eEEEecCCCCCeEEEEEcCCCCE----EEEEECC
Q 003556 21 CLKIGRKSSRVLVTG----------GEDHKVNLWAIGK--PN----AILSLSGHTSGIDSVSFDSSEVL----VAAGAAS 80 (811)
Q Consensus 21 ~lafsp~~~~lLatg----------s~Dg~I~VWdl~t--~~----~~~~l~~h~~~V~~l~fspdg~~----Lasgs~D 80 (811)
.++|+|.+..++++| +.+.++.||.+.. .. .+..+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999765567766 3345666665532 22 222222 3457889999887664 8889999
Q ss_pred CeEEEEECCCC------eEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEE
Q 003556 81 GTIKLWDLEEA------KIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRF 151 (811)
Q Consensus 81 G~I~IWDl~t~------~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~--~h~~~I~si~f 151 (811)
|.|.+||...- ..+.+...|.+.|..+.|++... .||+|+.||.|.|||+.+.+.-..+. .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998642 34566778999999999999766 99999999999999998755444442 24567999999
Q ss_pred cCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCC-CEEEEEECCC---eEEEEECCCC-eEEEEe
Q 003556 152 TPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHE-FLLATGSADR---TVKFWDLETF-ELIGSA 223 (811)
Q Consensus 152 spd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~V~sv~fspdg-~~Lasgs~Dg---~I~IwDl~~~-~~l~~~ 223 (811)
+.. .+.|++++.+|.+.|||++..+.+-.+..+.+ .+..+.|||+. ..|++++.|. .|.+||++.- .++..+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 873 45788899999999999999988877775544 47899999985 4566666543 6999999864 466777
Q ss_pred CCCCCCeeEEEEecCC-CEEEEE-ECCCEEEEEecCCceeeeeeccccceeEeee--cCCCEEEEEECCCeEEEEEecCC
Q 003556 224 GPETSGVRCLTFNPDG-RTLLCG-LHESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 224 ~~~~~~I~sl~fspdg-~~Lasg-s~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~--~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
.+|..+|.++.|++.+ .+|+++ .++.+.+|+.++++.+..+.....-..++.+ .+-.++++++-||.|.|+.+.+.
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 8999999999999977 666654 4457888998888888777664444455555 34468999999999999988876
Q ss_pred C
Q 003556 300 R 300 (811)
Q Consensus 300 ~ 300 (811)
.
T Consensus 330 ~ 330 (1049)
T KOG0307|consen 330 D 330 (1049)
T ss_pred C
Confidence 5
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=7.6e-15 Score=161.65 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=179.9
Q ss_pred EEEEEECCCeEEEEECCC-Cc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEEcCCCCC
Q 003556 31 VLVTGGEDHKVNLWAIGK-PN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLE-EAKI--VRTLTGHRSN 103 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~-t~~~--v~~l~~h~~~ 103 (811)
++++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 345557789999999964 32 444444 345677899999999887765 47889999997 3432 23222 3345
Q ss_pred eEEEEEeCCCCEEEEEEC-CCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE
Q 003556 104 CISVDFHPFGEFFASGSL-DTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKL 177 (811)
Q Consensus 104 I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~----~i~~~~~h~~~I~si~fspdg~~L~sgs-~Dg~I~IwDl~t~~~ 177 (811)
...++|+|++++|++++. ++.|.+|++.+.. .+..+. +.....+++|+|+|+++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 678999999998888764 7899999997432 233332 234567889999999886655 568999999976332
Q ss_pred EEE-----Ee-cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCC--C--eEEEEeCCC------CCCeeEEEEecCCC
Q 003556 178 LHD-----FK-CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLET--F--ELIGSAGPE------TSGVRCLTFNPDGR 240 (811)
Q Consensus 178 i~~-----~~-~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~--~--~~l~~~~~~------~~~I~sl~fspdg~ 240 (811)
+.. .. ........+.|+|+|++++++.. ++.|.+||+.. + +.+..+... ......+.|+|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11 12334678999999999988876 89999999973 2 333333221 11234688999999
Q ss_pred EEEEEEC--CCEEEEEecCCc----eeeeeeccccceeEeeecCCCEEEEEEC-CCeEEEEEecC
Q 003556 241 TLLCGLH--ESLKVFSWEPIR----CHDAVDVGWSRLSDLNVHEGKLLGCSYN-QSCVGVWVVDI 298 (811)
Q Consensus 241 ~Lasgs~--d~I~Vwd~~~~~----~~~~~~~~~~~i~~l~~~dg~lLasg~~-Dg~V~IWdvd~ 298 (811)
+|+++.. +.|.+|+++... ....+..+..+......++|++|+++.. +++|.+|+++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998854 469999996543 2223333333222233378988887765 89999998864
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.7e-16 Score=166.92 Aligned_cols=207 Identities=17% Similarity=0.367 Sum_probs=170.4
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCe
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGT 82 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~ 82 (811)
.+.||+++|..++|+|.+...+|+|++|.+|.||.+..+ +.+..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 467999999999999999999999999999999998543 4577889999999999999964 57888999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~-I~si~fspdg~~L~sg 161 (811)
|.+||+.+|+.+.++. |.+.|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|..+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998988 9999999999999999999999999999999999999888777652 4456677788855554
Q ss_pred E---CCCeEEEEECCCCe---EEEEEecCCCCeEEEEEeCCCCEEEE-EECCCeEEEEECCCCeE
Q 003556 162 G---EDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPHEFLLAT-GSADRTVKFWDLETFEL 219 (811)
Q Consensus 162 s---~Dg~I~IwDl~t~~---~i~~~~~h~~~V~sv~fspdg~~Las-gs~Dg~I~IwDl~~~~~ 219 (811)
. .+..+-+||..+-. ...++. ....|.---|.++..+++. |-.|+.|+.|.+....+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 3 36789999876532 344444 3455666667888776654 55799999999887553
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=2.3e-16 Score=160.25 Aligned_cols=238 Identities=21% Similarity=0.387 Sum_probs=186.3
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECC-------CeEEEEECCCC---------ceEEEec-CCCCCeEEEEEcCCCC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGED-------HKVNLWAIGKP---------NAILSLS-GHTSGIDSVSFDSSEV 72 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~D-------g~I~VWdl~t~---------~~~~~l~-~h~~~V~~l~fspdg~ 72 (811)
..|..|.+.|+.++-+|.+.++|+|+..+ ..+-||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45677889999999999999999998653 24789988432 3334444 3456899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEc-----CCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC
Q 003556 73 LVAAGAASGTIKLWDLEEAKI-VRTLT-----GHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT 143 (811)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~-v~~l~-----~h~~~I~sl~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~ 143 (811)
.+++-. |..|.+|++..+.. +..+. ++....++-+|+| +|+.+++. .|+++..||+++..+...+. .|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 888765 89999999987765 33332 3566788899998 67777776 58999999999988777664 688
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC---
Q 003556 144 RGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF--- 217 (811)
Q Consensus 144 ~~I~si~fspdg~-~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~--- 217 (811)
..|..+.|.|+.. +|+++++||.|+|||++.. ..++++.+|...|+++.|+|. ..+|++|+.|..|.+|....-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 8899999999754 6789999999999999864 578888999999999999995 678999999999999965321
Q ss_pred --------------------------eEEEEeCCCCCCeeEEEEecCCCEEEEE-ECCC
Q 003556 218 --------------------------ELIGSAGPETSGVRCLTFNPDGRTLLCG-LHES 249 (811)
Q Consensus 218 --------------------------~~l~~~~~~~~~I~sl~fspdg~~Lasg-s~d~ 249 (811)
..+.++..|...|++++|+.-..+++++ +.|+
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 1233566778888999998877777755 4443
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.6e-14 Score=151.65 Aligned_cols=288 Identities=16% Similarity=0.242 Sum_probs=210.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKI 93 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--G~I~IWDl~t~~~ 93 (811)
...++.+.|.. +..+|..|+.|| .++|.................|..+-|+ ..++|..+.+ ..++++++..+..
T Consensus 5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 34677788886 677899999998 7788876554433222233445555665 4466655554 4599999999888
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEE--CCCeEE
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIRFTPDGRWVVSGG--EDNTVK 168 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~---h~~~I~si~fspdg~~L~sgs--~Dg~I~ 168 (811)
+..+. ....|.++.++ .+.|+++-.+. |+|||+++.+.++++.. +...+.++.+++.+.+++.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 88877 66789999997 45666665544 99999999999988764 344566666666777887543 468999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCeEEEEeCCCC--CCeeEEEEecCCCEEEEE
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~-I~IwDl~~~~~l~~~~~~~--~~I~sl~fspdg~~Lasg 245 (811)
+||..+-+.+..+..|.+.+.+++|+++|.+||++++.|+ |++|.+.+|+.+.+++-.. ..|.+++|+||+++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999996 7999999999999986543 457899999999999876
Q ss_pred EC-CCEEEEEecCCceee-------------------------------------eeeccccc---eeEee-ecCCCEEE
Q 003556 246 LH-ESLKVFSWEPIRCHD-------------------------------------AVDVGWSR---LSDLN-VHEGKLLG 283 (811)
Q Consensus 246 s~-d~I~Vwd~~~~~~~~-------------------------------------~~~~~~~~---i~~l~-~~dg~lLa 283 (811)
++ ++|+||.++...... ......+. +..+. ......+.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 55 479999886432100 00111111 11111 13567888
Q ss_pred EEECCCeEEEEEecCCCceeeeecccee
Q 003556 284 CSYNQSCVGVWVVDISRIEPYTIGSVTR 311 (811)
Q Consensus 284 sg~~Dg~V~IWdvd~~~~~p~~~~~~~~ 311 (811)
+++.||.++.|.++..+-........+.
T Consensus 317 vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred EEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 9999999999999887655554444443
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3e-16 Score=162.84 Aligned_cols=266 Identities=20% Similarity=0.262 Sum_probs=190.2
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEE--EEcCCC-CCe
Q 003556 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEEAKIVR--TLTGHR-SNC 104 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t~~~v~--~l~~h~-~~I 104 (811)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||++...... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999966 56789999999999999998765443 334454 466
Q ss_pred EEEEEeCCCCEEEEEEC----CCcEEEEECCCCeE-EEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-
Q 003556 105 ISVDFHPFGEFFASGSL----DTNLKIWDIRKKGC-IHTY-KGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGK- 176 (811)
Q Consensus 105 ~sl~fspdg~~Lasgs~----Dg~I~IwDl~~~~~-i~~~-~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~- 176 (811)
.|++....++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767778888764 56899999997765 4443 57999999999999 67899999999999999997542
Q ss_pred ---EEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCC------------CCCeeEEEEecCCC
Q 003556 177 ---LLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPE------------TSGVRCLTFNPDGR 240 (811)
Q Consensus 177 ---~i~~~~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~------------~~~I~sl~fspdg~ 240 (811)
++..+. +...|.++.|+.++ +.|.+-+..++..+|+++.+.....+... ...+.......++.
T Consensus 201 eDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 233333 66779999999887 45888888999999999988755443221 01111111122334
Q ss_pred EEEEE-E-CCCEEEEEec---CCce---eeeeec-cccceeEeee-cCCCEEEEEECCCeEEEEEe
Q 003556 241 TLLCG-L-HESLKVFSWE---PIRC---HDAVDV-GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 241 ~Lasg-s-~d~I~Vwd~~---~~~~---~~~~~~-~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
..+.+ + .+...++-+. ++.. ...+.. +-..+.++.+ ..+.++.+|++||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44433 3 3344554443 2221 222222 2223344443 45789999999999999987
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=162.38 Aligned_cols=289 Identities=17% Similarity=0.264 Sum_probs=210.0
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC------CCceEEEecC-CCCCeEEEEEcCCCCEEEEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPNAILSLSG-HTSGIDSVSFDSSEVLVAAG 77 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~------t~~~~~~l~~-h~~~V~~l~fspdg~~Lasg 77 (811)
|.+..+.+.+|.+.|+++.|+. ++++|++|+.|..+.+|++. +.+++..... |...|.|++|.-...++++|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 3444567789999999999998 68999999999999999984 3455554443 45899999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEE--EEecCCCCeEEEEEc
Q 003556 78 AASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIH--TYKGHTRGVNAIRFT 152 (811)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~--~~~~h~~~I~si~fs 152 (811)
+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... .+. ...........+.|+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999999988877752 23489999999999999999999999999998654 222 222345567889999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeE-EEE---EecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EEEe
Q 003556 153 PD-GRWVVSGGEDNTVKLWDLTAGKL-LHD---FKCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSA 223 (811)
Q Consensus 153 pd-g~~L~sgs~Dg~I~IwDl~t~~~-i~~---~~~h---~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-l~~~ 223 (811)
|. ..+|++.+..+-+-+||.+.... +.. +.+. ...-.++.|+|+|..|.+--....-.+||+-...+ +..+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 94 56778888899999999986432 111 1111 12235788999999888877666677888876443 3333
Q ss_pred CCC------CCCeeEEEEecCCCEEEEEECC-CEEEEEecCCce-----------------------eeeeeccccceeE
Q 003556 224 GPE------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-----------------------HDAVDVGWSRLSD 273 (811)
Q Consensus 224 ~~~------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~-----------------------~~~~~~~~~~i~~ 273 (811)
... ...+.+++|-.|- .+++|+++ +|.+|.+..... +.++..+.+....
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 311 1246677887554 48888888 799998753211 1123344444444
Q ss_pred eee-cCCCEEEEEECCCeEEEEE
Q 003556 274 LNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 274 l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
+.+ +...+|++++-...++||.
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 444 3456777778889999994
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2e-16 Score=171.50 Aligned_cols=263 Identities=16% Similarity=0.320 Sum_probs=195.4
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEE--------cCCCCEEEEEECCCeEEE
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--------DSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~DG~I~I 85 (811)
-|...|.|+.|.. ....++++ +|..+.+|.--+......+.-....|....+ -.....++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccc-cceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 5777888999986 45555555 4555555543222222222211122221111 112346778889999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
.+ ..++.-+.+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+ ..+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 87 56777788889999999999999999999999999999998 4555444454566789999999988776665 467
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEE
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasg 245 (811)
.+.|=-+.....+-.++.|.+-|.++.|++...++++|++|-..++||.. |..+.....|..+|++++|.|+ +.++.+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeee
Confidence 77887888777788899999999999999999999999999999999976 6778888899999999999999 777788
Q ss_pred ECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEE
Q 003556 246 LHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (811)
Q Consensus 246 s~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~I 293 (811)
+.+.++ ++..+.-.++...|+ .||..++||...|.|-+
T Consensus 245 S~nt~R---~~~p~~GSifnlsWS-------~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYNTAR---FSSPRVGSIFNLSWS-------ADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee---ecCCCccceEEEEEc-------CCCceeeccccCceEEE
Confidence 887776 333333334444454 78999999888876643
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=156.10 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=180.7
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCC-----C--ce-----EEEec-CCCCCeEEEEEc-------CCCCEEEEEE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----P--NA-----ILSLS-GHTSGIDSVSFD-------SSEVLVAAGA 78 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t-----~--~~-----~~~l~-~h~~~V~~l~fs-------pdg~~Lasgs 78 (811)
...+.|+| ++..|++-+.|..+++|++.. . .. ...+. .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45688999 556788888999999999831 1 10 11111 123567777874 6788999999
Q ss_pred CCCeEEEEECCCCeEEEEEcC--CCC---CeEEEEEeCCCCEEEEEECCCcEEEEEC-CCCeE--EEEE-----ecCCCC
Q 003556 79 ASGTIKLWDLEEAKIVRTLTG--HRS---NCISVDFHPFGEFFASGSLDTNLKIWDI-RKKGC--IHTY-----KGHTRG 145 (811)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~--h~~---~I~sl~fspdg~~Lasgs~Dg~I~IwDl-~~~~~--i~~~-----~~h~~~ 145 (811)
.+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|++|. ...|+++|+ +.|.- +... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999998877764 333 346899999999999885 578999999 44432 1111 123567
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCC-eEEEE
Q 003556 146 VNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETF-ELIGS 222 (811)
Q Consensus 146 I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~-~~l~~ 222 (811)
|.+++|+| +...++.|+....+-||.-..+..+..+.+|.+.|+.++|+++|+.|.+|.. |-.|..||++.. .++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 89999999 4558999999999999988888899999999999999999999999999885 678999999864 45566
Q ss_pred eCCCCC-CeeEEEE--ecCCCEEEEEEC-CCEEEEEecC
Q 003556 223 AGPETS-GVRCLTF--NPDGRTLLCGLH-ESLKVFSWEP 257 (811)
Q Consensus 223 ~~~~~~-~I~sl~f--spdg~~Lasgs~-d~I~Vwd~~~ 257 (811)
+..|.+ .-..|.| .|+|++|++|.. +.+++||++.
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 665544 2334444 688999999954 5699999986
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.9e-16 Score=169.94 Aligned_cols=241 Identities=21% Similarity=0.370 Sum_probs=192.2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC--EEEEEECCCcEEEE
Q 003556 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE--FFASGSLDTNLKIW 128 (811)
Q Consensus 51 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~--~Lasgs~Dg~I~Iw 128 (811)
+-..+.||++.|.+|...|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+. .||++- ...+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 445678999999999999999999999999999999999999999987 567899999999876 344443 3334444
Q ss_pred ECCCC-------------------------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eEE
Q 003556 129 DIRKK-------------------------------------GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN---TVK 168 (811)
Q Consensus 129 Dl~~~-------------------------------------~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg---~I~ 168 (811)
+..-| .-+...-.|...|..+.|+..|.||++..-++ .|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 01222334788899999999999999887643 689
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
|+++.......-|.-..+.|.++.|||...+|++++. ..|+|||+....++..+......|..++.+|.|.-|++|+.+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999887777777667788999999999999998885 579999999888888887778889999999999999988777
Q ss_pred -CEEEEEecCC-ceeeeeeccccceeEeeecCC-CEEEEEECCCeEEEE
Q 003556 249 -SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVW 294 (811)
Q Consensus 249 -~I~Vwd~~~~-~~~~~~~~~~~~i~~l~~~dg-~lLasg~~Dg~V~IW 294 (811)
.+..||++-. +..+.+..+...+..+.+|.. .++++|+.||++.|+
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 5777888753 455566666666777777765 688899999999998
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=5.3e-16 Score=159.73 Aligned_cols=238 Identities=22% Similarity=0.373 Sum_probs=189.0
Q ss_pred CCCEEEEEEee------CCCcEEEEEECCCeEEEEECCCCceEEEecC--CCC---CeEEEEEcCCCCEEEEEECCCeEE
Q 003556 16 SSTVNCLKIGR------KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTS---GIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 16 ~~~V~~lafsp------~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~--h~~---~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
...|...+|-+ .+..++++.+.+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 35678888863 1566899999999999999999988877764 332 45689999999999886 578899
Q ss_pred EEEC-CCCeE--EEEE-----cCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003556 85 LWDL-EEAKI--VRTL-----TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (811)
Q Consensus 85 IWDl-~t~~~--v~~l-----~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg 155 (811)
+||+ +.|.- +... .+..+-|.+++|+|... .++.|+....+-||.-..+.++..+-+|.+.|+.++|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9999 44432 1111 13467789999999655 89999999999999988899999999999999999999999
Q ss_pred CEEEEEEC-CCeEEEEECCCC-eEEEEEecCCC-CeEE--EEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCC
Q 003556 156 RWVVSGGE-DNTVKLWDLTAG-KLLHDFKCHEG-QIQC--IDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSG 229 (811)
Q Consensus 156 ~~L~sgs~-Dg~I~IwDl~t~-~~i~~~~~h~~-~V~s--v~fspdg~~Lasgs~Dg~I~IwDl~~-~~~l~~~~~~~~~ 229 (811)
+.|++|.. |-.|..||++.. ..+..+..|.+ .-.. ....|++.+|++|+.||.|++||+++ +..+..+..+...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999985 678999999864 45555555544 2223 44567899999999999999999998 7778888899999
Q ss_pred eeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 230 VRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
++.++++|--.++++++.. ++|-..
T Consensus 343 vNgvslnP~mpilatssGq--r~f~~~ 367 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ--RIFKYP 367 (406)
T ss_pred ccceecCcccceeeeccCc--eeecCC
Confidence 9999999998888877654 455443
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=1.5e-15 Score=160.86 Aligned_cols=247 Identities=20% Similarity=0.395 Sum_probs=184.3
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC--------C--------CceEEEecCCCCCeEEEEEcCCCC
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--------K--------PNAILSLSGHTSGIDSVSFDSSEV 72 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~--------t--------~~~~~~l~~h~~~V~~l~fspdg~ 72 (811)
+-.+..|...|+++.|+| .+.+||+|+++|.|.+|... + -...+.+.+|...|..++|++++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 346778999999999999 77899999999999999765 2 123456678999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe------------
Q 003556 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK------------ 140 (811)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~------------ 140 (811)
++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999999999999999999999999999999999877777765443322211
Q ss_pred -------cCC----CCeEEEEEcCCCCEEEEEEC----CCe-----EEEEECCC-CeEEEEEecCCCCeEEEEEeC----
Q 003556 141 -------GHT----RGVNAIRFTPDGRWVVSGGE----DNT-----VKLWDLTA-GKLLHDFKCHEGQIQCIDFHP---- 195 (811)
Q Consensus 141 -------~h~----~~I~si~fspdg~~L~sgs~----Dg~-----I~IwDl~t-~~~i~~~~~h~~~V~sv~fsp---- 195 (811)
-|. .....++|+|+|..|++... ++. .++|+-.. .+....+.+...+...+.|+|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 011 23456789999998887532 222 24444321 223334444444555555554
Q ss_pred --------------CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecC
Q 003556 196 --------------HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (811)
Q Consensus 196 --------------dg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (811)
-+..+|.++. ..|++||.++..++... ..|-..|+.++|++||.+|+.++.|+ ..+..+++
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred eccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 2334566665 47999999998877664 45678899999999999999887775 44444444
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=6.7e-16 Score=170.46 Aligned_cols=244 Identities=17% Similarity=0.349 Sum_probs=191.4
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (811)
.....++++++|.+.|+|++|+. +|..+++|+.|..|.+|+-. .+-+..+ .|.+.|.|+.|+|-...|++++- ...
T Consensus 41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~k-lEG~LkY-SH~D~IQCMsFNP~~h~LasCsL-sdF 116 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSK-LEGILKY-SHNDAIQCMSFNPITHQLASCSL-SDF 116 (1081)
T ss_pred CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccc-ccceeee-ccCCeeeEeecCchHHHhhhcch-hhc
Confidence 34567899999999999999998 67789999999999999853 2333333 49999999999999999988864 346
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCC-----
Q 003556 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIRFTPDG----- 155 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~---~h~~~I~si~fspdg----- 155 (811)
-+|........+ .+ ....|.+++|..||++|+.|-.+|+|.+-+-. ++....+. +...+|++++|+|..
T Consensus 117 glWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 688866543322 11 34568899999999999999999999998743 44433443 467899999999942
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003556 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~f 235 (811)
..+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.+++.|+.|+.+++|- +.|-.+.+......+|+.++.
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE
Confidence 467777777788887765 555544333444568999999999999999999999994 668888888888899999999
Q ss_pred ecCCCEEEEEECC-CEEEEEec
Q 003556 236 NPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~ 256 (811)
.|++++++.|+.| +|.-|++-
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhH
Confidence 9999999999877 47777653
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.67 E-value=2.1e-15 Score=158.87 Aligned_cols=205 Identities=20% Similarity=0.393 Sum_probs=167.5
Q ss_pred EEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC-------eEEEEEecCCCCeEEEEEcCC-CCEEEEEECCC
Q 003556 95 RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK-------GCIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDN 165 (811)
Q Consensus 95 ~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~-------~~i~~~~~h~~~I~si~fspd-g~~L~sgs~Dg 165 (811)
-.+.+|.++|..++|+|.++ .||+|+.|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34568999999999999665 6999999999999998754 356778899999999999994 56889999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC-CeeEEEEecCCCEEEE
Q 003556 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTLLC 244 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~-~I~sl~fspdg~~Las 244 (811)
.|.+||+.+|+.+..+. |...|+++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999999888888 999999999999999999999999999999999999998867654 3456778889997777
Q ss_pred EECC----CEEEEEecCCce---eeeeeccccceeEeeecCCCEE-EEEECCCeEEEEEecCCC
Q 003556 245 GLHE----SLKVFSWEPIRC---HDAVDVGWSRLSDLNVHEGKLL-GCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 245 gs~d----~I~Vwd~~~~~~---~~~~~~~~~~i~~l~~~dg~lL-asg~~Dg~V~IWdvd~~~ 300 (811)
|... .+.+|+-+.... +..++...+.+..+.-.+..++ .||=.|+.|+-|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7443 588888765432 3444555555555555666655 577789999999887644
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=144.55 Aligned_cols=231 Identities=16% Similarity=0.257 Sum_probs=177.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003556 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEE----------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t----------~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl 130 (811)
.|..-+|+|.+++|++|..+|.|.++.+.+ ...+...++|.++++.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 455667899999999999999999999853 23455668999999999999 56777775 599999976
Q ss_pred CCCeE------EEEEe--cC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC
Q 003556 131 RKKGC------IHTYK--GH-----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197 (811)
Q Consensus 131 ~~~~~------i~~~~--~h-----~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg 197 (811)
+.... +...+ -| --.|+++...|..+-++.++.|+.++.||+.+|+...++++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 53221 11111 11 2358899999988888888899999999999999999999999999999885555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeCCC----------CCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeecc
Q 003556 198 FLLATGSADRTVKFWDLETFELIGSAGPE----------TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG 267 (811)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~----------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~ 267 (811)
..+++|++||++++||+++++.+..+... ...|-+++. +..+|++|....+.+|.+...++..++...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecc
Confidence 57999999999999999999988876432 233555555 456999998889999999999888777655
Q ss_pred ccceeEeeecCCCEEEEEECCCeEEEEEecC
Q 003556 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 268 ~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
.. +..+.+. .+.+..++...+|.-|.+..
T Consensus 247 a~-v~~v~F~-~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 AR-VHLVDFV-DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cc-eeEeeee-cceEEEeccccceeeeeecc
Confidence 43 2333333 35555666777888887765
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=153.76 Aligned_cols=244 Identities=15% Similarity=0.285 Sum_probs=187.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
...+.+|.+.|+|+.|-. ++ +|++|..-|.|++|++.+......+. .|...|+.+..-|+ ..+.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 345669999999999987 44 48999999999999999988888888 56788999998887 4566888999999999
Q ss_pred CCCCeEEEE-------------------------Ec----------------------------CCCCCeEEEEEeC-CC
Q 003556 88 LEEAKIVRT-------------------------LT----------------------------GHRSNCISVDFHP-FG 113 (811)
Q Consensus 88 l~t~~~v~~-------------------------l~----------------------------~h~~~I~sl~fsp-dg 113 (811)
+..+..+.. +. +-.+.++|..|.. ++
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 864221100 00 0112344444322 23
Q ss_pred C--EEEEEECCCcEEEEECCCCeE----------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eE--
Q 003556 114 E--FFASGSLDTNLKIWDIRKKGC----------IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KL-- 177 (811)
Q Consensus 114 ~--~Lasgs~Dg~I~IwDl~~~~~----------i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~--~~-- 177 (811)
. ++++|-.+|.+.+||+..+.. +..+..|..+|.++.|.+.-..=++|+.+..+..|.+... .+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 3 467788899999999998733 3344568999999999875555577777888888887633 21
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 178 i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
-.+.......|..+..-||++.+|+++.|+.|++|..++..++..+..|.+.|++++|+|+...+++++.| .|.+|++
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 12222334568889999999999999999999999999999999999999999999999999999988877 5999975
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.1e-15 Score=168.16 Aligned_cols=288 Identities=17% Similarity=0.269 Sum_probs=198.4
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
.|...++|.+++| .++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 4667799999999 889999999999999996422 23345677799999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----------CCCCeEEEEEcCCCCEE
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-----------HTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~-----------h~~~I~si~fspdg~~L 158 (811)
+++ .+-+..-.++|..+.++||+++.+....|..|.+....+.....++.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 556667788999999999999999999999999997754333222221 12234555666644455
Q ss_pred EEEECCCeEEEEECCCCeEEEEE---------------------------------------------------------
Q 003556 159 VSGGEDNTVKLWDLTAGKLLHDF--------------------------------------------------------- 181 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~--------------------------------------------------------- 181 (811)
+..+..|.|.+||+.+...+..+
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 55556666666665432211111
Q ss_pred -----------ecCCCCeEEEEEeC-CC-CEEEEEECCCeEEEEECCC----------CeEEEEeCCCCCCeeEEEEecC
Q 003556 182 -----------KCHEGQIQCIDFHP-HE-FLLATGSADRTVKFWDLET----------FELIGSAGPETSGVRCLTFNPD 238 (811)
Q Consensus 182 -----------~~h~~~V~sv~fsp-dg-~~Lasgs~Dg~I~IwDl~~----------~~~l~~~~~~~~~I~sl~fspd 238 (811)
..|+..+...+|.+ .. ...++++.||.++||-+.. +.+...-.-|..+++.++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 12333333333333 22 2788899999999998843 2233333347888999999999
Q ss_pred CCEEEEEECCCEEEEEecC-CceeeeeeccccceeEeee---cCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 239 GRTLLCGLHESLKVFSWEP-IRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~-~~~~~~~~~~~~~i~~l~~---~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
|..|+++.++.|.+||+.+ ...........-++..+.. ......+.......+.+|++-...+.-
T Consensus 521 Gslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 521 GSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred CcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 9999999999999999987 3322222111111111111 112333445567889999988777653
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=2e-14 Score=164.86 Aligned_cols=265 Identities=18% Similarity=0.237 Sum_probs=192.7
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE--EE----EEcCCCCCeEEEEEeC
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI--VR----TLTGHRSNCISVDFHP 111 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~--v~----~l~~h~~~I~sl~fsp 111 (811)
+.+.||++...........-...|.|++|+| +..+++.|+.+|.|.+||+..+.. .. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999976633333333568999999998 556888888999999999987654 22 2235889999999977
Q ss_pred CCC--EEEEEECCCcEEEEECCCCeEE------EEEe------cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--
Q 003556 112 FGE--FFASGSLDTNLKIWDIRKKGCI------HTYK------GHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA-- 174 (811)
Q Consensus 112 dg~--~Lasgs~Dg~I~IwDl~~~~~i------~~~~------~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t-- 174 (811)
+.. -|++++.||.|..|+++.-... .... .....++++.|.+ +...+++|+++|.|..-+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 4999999999999988743321 0111 1224588999998 567899999999987743322
Q ss_pred -Ce-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 175 -GK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 175 -~~-----~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
.. ....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||....+++..+
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 233455688999999999987766665569999999988 77788888888788999999998876665544
Q ss_pred --CCEEEEEecCCceeee--eeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 248 --ESLKVFSWEPIRCHDA--VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 248 --d~I~Vwd~~~~~~~~~--~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
+.+.+||+.......+ ..........+.+ ++|++|++|...|.+.+|++...-..|
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~ 522 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVP 522 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhcc
Confidence 3699999875443322 2333333444444 559999999999999999997654443
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.1e-14 Score=140.25 Aligned_cols=224 Identities=20% Similarity=0.340 Sum_probs=169.9
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce------EEEe--cCCC-----CCeEEEEEcCC
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA------ILSL--SGHT-----SGIDSVSFDSS 70 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~------~~~l--~~h~-----~~V~~l~fspd 70 (811)
+-..++..+++|.++|+.++|.. .+|++|++ |.|+-|....... +... .-|. -.|+++...|.
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred CCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 34567788899999999999983 45666654 9999998753322 1111 1122 46889999998
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-------
Q 003556 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT------- 143 (811)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~------- 143 (811)
.+-++.++.|+.++-||+++|+..+++++|.+.+.++.--.....+++|+.||++++||+++++++..+...+
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCc
Confidence 8877777889999999999999999999999999999986667789999999999999999999988875322
Q ss_pred ---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 144 ---RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (811)
Q Consensus 144 ---~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l 220 (811)
..|.+++. +..||++|+ ...+.+|.++..++...|. ....+..+.|..+ .+++++..+.|.-|.+. |.+-
T Consensus 206 ~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~ 278 (325)
T KOG0649|consen 206 DWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQ 278 (325)
T ss_pred ccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEE
Confidence 23555554 456888774 5678999999998888887 4677888888654 78888888889999875 4444
Q ss_pred EEeCCCCCCeeEEEEecC
Q 003556 221 GSAGPETSGVRCLTFNPD 238 (811)
Q Consensus 221 ~~~~~~~~~I~sl~fspd 238 (811)
..+.......++..|+..
T Consensus 279 a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 279 ANIPVESTACYSASWQTS 296 (325)
T ss_pred EeccCCccceeeecccCC
Confidence 444444444556665544
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=7.5e-17 Score=182.11 Aligned_cols=281 Identities=20% Similarity=0.347 Sum_probs=218.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.++.+.+|-+.|+|+.|.. .++++++|++|..++||..+++.++....||.+.|+.++.+.+..++++++.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3456789999999999998 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---Ee-cCCCCeEEEEEcCCCCEEEEEEC
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT---YK-GHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~---~~-~h~~~I~si~fspdg~~L~sgs~ 163 (811)
+.++.++..+.+|.+.|++++|+|.. +.+.||++++||.+-.-.+.. .+ ....-+.++.|...+..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999955 778899999999872111111 00 12345777888888888999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEE
Q 003556 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242 (811)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~L 242 (811)
|+.-..|.+..-. .+...+.-+.++.+ ..+.+++-.+..+++|++.+|.+++...+|...+..+.++|-+..+
T Consensus 337 d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred CcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 9988877654211 11111111122212 2466677778899999999999999999999999999999987776
Q ss_pred E--EEECCCEEEEEecCCceeeeeeccccc-eeEeeecCCCEEEEEECCCeEEEEEecCC
Q 003556 243 L--CGLHESLKVFSWEPIRCHDAVDVGWSR-LSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 243 a--sgs~d~I~Vwd~~~~~~~~~~~~~~~~-i~~l~~~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
+ +|.++...|||.-.+........+... +.+-+..+|..+++.-.-|.++|....-+
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 6 556667999998766555554443333 33344478888888777777777754433
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5e-15 Score=171.21 Aligned_cols=286 Identities=16% Similarity=0.288 Sum_probs=208.9
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCC---CCeEEEEEcC--CCCEEEEEECCCeEEEEECC
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT---SGIDSVSFDS--SEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~---~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~ 89 (811)
....-..+.|+| -...++++++.-.|.|||.+.++.+..+..+. ..|+.+.+-. |..++++|+.||.|+||+-.
T Consensus 1063 n~~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 334566788888 56678888878899999999999988877543 5788998854 45689999999999999753
Q ss_pred -----CCeEEEEEcC-------CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcC-CC
Q 003556 90 -----EAKIVRTLTG-------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTP-DG 155 (811)
Q Consensus 90 -----t~~~v~~l~~-------h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~-h~~~I~si~fsp-dg 155 (811)
..+.+..+.+ ..+.-.-++|.....+|++++.-..|+|||.....++..+.. ....|+++.-+- .|
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2234443332 112224567887777888877788999999998887776653 334566665443 57
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEEEecCCCC--eEEEEEeCCCCE-EEEEECCCeEEEEECCCCeEE--EEeCCC-
Q 003556 156 RWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQ--IQCIDFHPHEFL-LATGSADRTVKFWDLETFELI--GSAGPE- 226 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~--V~sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~l--~~~~~~- 226 (811)
+.+++|..||.|++||.+... .+..++.|... |..+.+.++|.- |++|+.||.|++||++..... ..+..|
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999998643 46667777776 999999997765 999999999999999974211 112222
Q ss_pred --CCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeee-----e-eccccceeEeeecCCC-EEEEEECCCeEEEEEec
Q 003556 227 --TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA-----V-DVGWSRLSDLNVHEGK-LLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 227 --~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~-----~-~~~~~~i~~l~~~dg~-lLasg~~Dg~V~IWdvd 297 (811)
++..+++..|++...+++|+...|+||+......... + .-.-..+.++.+|.-+ ++++|+.|.+|.||...
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 2358999999999999999888899999875432111 1 1112334677787665 67889999999999876
Q ss_pred CCCc
Q 003556 298 ISRI 301 (811)
Q Consensus 298 ~~~~ 301 (811)
-.++
T Consensus 1382 k~~~ 1385 (1387)
T KOG1517|consen 1382 KPRL 1385 (1387)
T ss_pred CcCC
Confidence 5543
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=7.1e-15 Score=168.52 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=185.2
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce--EEE----ecCCCCCeEEEEEcCCCC--EEEEEECCCeEEEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILS----LSGHTSGIDSVSFDSSEV--LVAAGAASGTIKLW 86 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~--~~~----l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~IW 86 (811)
-...|+|++|+|.+..+++.|..+|.|.+||+..+.. ... ...|..++..+.|..+.. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4578999999999999999999999999999976654 222 235889999999965444 48899999999999
Q ss_pred ECCCCeE-E-----EEEc------CCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCC---Ce-----EEEEEecCCCC
Q 003556 87 DLEEAKI-V-----RTLT------GHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRK---KG-----CIHTYKGHTRG 145 (811)
Q Consensus 87 Dl~t~~~-v-----~~l~------~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~---~~-----~i~~~~~h~~~ 145 (811)
+++.-.. . .... .-...+++++|.+.. ..|++|+.+|.|+--+-.. .. ....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322 1 1111 122367899999855 4799999999988743322 21 23345568899
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCC--CeEEE
Q 003556 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLET--FELIG 221 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i~~~~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~--~~~l~ 221 (811)
|+++.++|-+..++..+.|.+++||... ....+..+..+...+++++|+|.. ..++++..||.|.|||+.. ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999966655555559999999988 667777787777889999999975 5788888899999999965 34455
Q ss_pred EeCCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecC
Q 003556 222 SAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (811)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (811)
+........+.+.|+++|+.|++|..++ +.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5555566678889999999999997774 89998853
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=7.8e-14 Score=153.62 Aligned_cols=246 Identities=12% Similarity=0.211 Sum_probs=166.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC-Cce--EEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTI 83 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t-~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I 83 (811)
.++.+. +.+....++++|++..+++++..++.|.+|++.. +.. +.... .......++|+|++++|++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 334443 4567888999995444444445688999999863 332 22222 2345678999999998888764 8899
Q ss_pred EEEECCC-C---eEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEE-----Ee-cCCCCeEEEEEc
Q 003556 84 KLWDLEE-A---KIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHT-----YK-GHTRGVNAIRFT 152 (811)
Q Consensus 84 ~IWDl~t-~---~~v~~l~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~-----~~-~h~~~I~si~fs 152 (811)
.+|++.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|+
T Consensus 105 ~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred EEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 9999974 2 2333333 234467789999999886555 568999999986433211 11 123446789999
Q ss_pred CCCCEEEEEEC-CCeEEEEECCC--C--eEEEEEecC------CCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCe--
Q 003556 153 PDGRWVVSGGE-DNTVKLWDLTA--G--KLLHDFKCH------EGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETFE-- 218 (811)
Q Consensus 153 pdg~~L~sgs~-Dg~I~IwDl~t--~--~~i~~~~~h------~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~-- 218 (811)
|+|++++++.. ++.|.+||+.. + +.+..+... ......+.|+|++++|+++.. ++.|.+|++....
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 99999988876 89999999973 3 233333321 112346889999999998864 7899999985432
Q ss_pred --EEEEeCCCCCCeeEEEEecCCCEEEEEEC--CCEEEEEecC
Q 003556 219 --LIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (811)
Q Consensus 219 --~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (811)
.+..+.. ......+.|+|||++|+++.. +.+.+|.++.
T Consensus 264 ~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 2333322 234578999999999998764 4699998864
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=7e-15 Score=149.68 Aligned_cols=237 Identities=19% Similarity=0.322 Sum_probs=181.7
Q ss_pred cCCCCEEEEEEeeCCC----cEEEEEECCCeEEEEECCCCceEE----Ee-----cCCCCCeEEEEEcC-CCCEEEEEEC
Q 003556 14 AHSSTVNCLKIGRKSS----RVLVTGGEDHKVNLWAIGKPNAIL----SL-----SGHTSGIDSVSFDS-SEVLVAAGAA 79 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~----~lLatgs~Dg~I~VWdl~t~~~~~----~l-----~~h~~~V~~l~fsp-dg~~Lasgs~ 79 (811)
.|..+++.+-|.|+.. .+|||+++ .+++|.+...+... .+ ..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6888999999999542 46776653 69999986322111 11 23567999999976 6678999999
Q ss_pred CCeEEEEECCCCe---EEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe---cCCCCeEEEEEc
Q 003556 80 SGTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIRFT 152 (811)
Q Consensus 80 DG~I~IWDl~t~~---~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~---~h~~~I~si~fs 152 (811)
|.+..|||++++. ....+-.|..+|..++|...+. .||+.+.||.+++||++..+.-..+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 3566778999999999998554 79999999999999999766433332 224567888998
Q ss_pred C-CCCEEEEEECC-CeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCe------EEEE
Q 003556 153 P-DGRWVVSGGED-NTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE------LIGS 222 (811)
Q Consensus 153 p-dg~~L~sgs~D-g~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~------~l~~ 222 (811)
+ |-+++++-..| ..|.|.|++.. ..+..+..|.+.|+.++|.|. ...|++++.|..+.+||+..-- ++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 7 55677776555 46999999964 567889999999999999997 5689999999999999997522 2222
Q ss_pred eCCCCCCeeEEEEec-CCCEEEEEECCCEEEE
Q 003556 223 AGPETSGVRCLTFNP-DGRTLLCGLHESLKVF 253 (811)
Q Consensus 223 ~~~~~~~I~sl~fsp-dg~~Lasgs~d~I~Vw 253 (811)
+. ..+.|+.+.|++ .+.+|+++..+.+.+.
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 22 467799999995 5778998888765553
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=157.64 Aligned_cols=207 Identities=19% Similarity=0.312 Sum_probs=171.9
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003556 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~f 109 (811)
..|+.++.||.+.|.+- .++.-..+..|.+.|.+-.|+++|.-|++++.||.|++|. ++|-...++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 46888999999999874 5777778899999999999999999999999999999998 455555556567789999999
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q 003556 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQ 189 (811)
Q Consensus 110 spdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~ 189 (811)
.|+.+.++.+. .+.+.|=-+.....+-.++.|.+-|.++.|++..+.+++|++|-..++||.. |..+..-..|+.+|+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 99988776664 4667777777777788899999999999999999999999999999999964 677777778999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEE
Q 003556 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (811)
+++|+|+ ..++.++.+ +++ ...+..+.|..++||+||..+++|+..+..++
T Consensus 232 Sva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9999999 666666643 344 22345677999999999999999987764443
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.4e-14 Score=147.77 Aligned_cols=238 Identities=15% Similarity=0.233 Sum_probs=191.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
++.|.--..+|+|.+|++ +...+|++..+..|.||..... +..+++..|...|++|.|+|..+.|++++.|..-++
T Consensus 3 ~~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eEEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 345555668999999999 6778999999999999987544 467889999999999999999999999999999999
Q ss_pred EEC-CCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCeEEEEEcCCCCEE
Q 003556 86 WDL-EEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI----HTYKGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 86 WDl-~t~~--~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i----~~~~~h~~~I~si~fspdg~~L 158 (811)
|.. ..++ +.-.+..+....+++.|+|.++.|++|+....|.+|-++...-- +.-+.+...|.++.|+|++-.|
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 998 4443 44455568899999999999999999999999999988754322 2234567789999999999999
Q ss_pred EEEECCCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-E
Q 003556 159 VSGGEDNTVKLWDLTA------------------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-L 219 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t------------------~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~ 219 (811)
++|+.|+.+++|..-- |+++.++....+.+..+.|+|.|..|+-.+.|..+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 9999999999986421 34455555567889999999999999999999999999987764 3
Q ss_pred EEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 220 IGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 220 l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
+.......-+..++.|-.+...+++|.+
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCC
Confidence 4444444577888888877766666643
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=7e-14 Score=164.27 Aligned_cols=218 Identities=19% Similarity=0.295 Sum_probs=165.2
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVLVAAG 77 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-------~~~~~l~~h~~~V~~l~fspdg~~Lasg 77 (811)
+...+.++..|...|..++.++..+.++++|+.||+|++|+..+- ....++......+.++.+.+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456678899999999999999977799999999999999998431 2233444456889999999999999999
Q ss_pred ECCCeEEEEECCCC-------eEEEEEcCCCC--CeEEEEEeC-CCC-EEEEEECCCcEEEEECCCCeEEEEEec--CCC
Q 003556 78 AASGTIKLWDLEEA-------KIVRTLTGHRS--NCISVDFHP-FGE-FFASGSLDTNLKIWDIRKKGCIHTYKG--HTR 144 (811)
Q Consensus 78 s~DG~I~IWDl~t~-------~~v~~l~~h~~--~I~sl~fsp-dg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~--h~~ 144 (811)
+.||.|.+.+++.. .+.+....+.. .+..-+|.. .+. .++.+..-+.|..||++.....++++. ..+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998762 12222222222 233333433 223 688888889999999998776666542 346
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCC---CEEEEEE--CCCeEEEEECCCCe
Q 003556 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHE---FLLATGS--ADRTVKFWDLETFE 218 (811)
Q Consensus 145 ~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~V~sv~fspdg---~~Lasgs--~Dg~I~IwDl~~~~ 218 (811)
.|++++.+|.+.|+++|+..|.+.+||++-+..+..+.. +..+|..+..+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 799999999999999999999999999999988887763 45778888877742 3444444 57789999999886
Q ss_pred EEEE
Q 003556 219 LIGS 222 (811)
Q Consensus 219 ~l~~ 222 (811)
.-..
T Consensus 1277 ~~~v 1280 (1431)
T KOG1240|consen 1277 RQTV 1280 (1431)
T ss_pred ceEE
Confidence 5444
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5.4e-15 Score=162.18 Aligned_cols=221 Identities=20% Similarity=0.328 Sum_probs=168.8
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC----------CceEEEecCCCCCeEEEEEcCCCCE
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----------PNAILSLSGHTSGIDSVSFDSSEVL 73 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t----------~~~~~~l~~h~~~V~~l~fspdg~~ 73 (811)
+...++.+|.+|.++|.|+++.+ ++..+++|+.||+|+.|++.. ......+.||++.|+.++++.....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 44567899999999999999998 788899999999999996631 1234567899999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEec-------CC
Q 003556 74 VAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKG-------HT 143 (811)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~v~~l~~h~--~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~~~-------h~ 143 (811)
|++++.||+++.|+...... .++.... +.-.++++-.... ..++...-+.-.++++.....+..+.. ..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999999876655 4443222 2334555543221 222222223333344444333333331 12
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003556 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 144 ~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~ 223 (811)
..+.-+.++|.+...+++..|+.|+++|..+++.++....|...++++++.|+|.+|++|+.||.+++|.+....++...
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 34778889999999999999999999999999999999999999999999999999999999999999999877777665
Q ss_pred CCC
Q 003556 224 GPE 226 (811)
Q Consensus 224 ~~~ 226 (811)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 554
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.3e-15 Score=163.30 Aligned_cols=231 Identities=19% Similarity=0.313 Sum_probs=202.2
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (811)
..-..+.|+. +|+.|+.|+..|.|-.+|+.+.+....+.. ...|.++.|-.+..++|++ ....++||| ..|..+..
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 3456778887 788899999999999999999998888773 4678999998888888775 578899999 55777777
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (811)
Q Consensus 97 l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (811)
++.| ..|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+.+..++-+|....+-+|...|+|.+|.....+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 7755 568899999998899999999999999999999999998888899999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEE
Q 003556 177 LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (811)
Q Consensus 177 ~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (811)
.+..+-+|.++|.++++.++|.|+|+.+.|..++|||++....+.++.. ..+...++||..| .|+++..+.+.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence 9999999999999999999999999999999999999999988777665 4567888998665 77778777889985
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4e-14 Score=161.70 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=156.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECC--CeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTI 83 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~D--g~I~VWdl~t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I 83 (811)
.+.+..|...|.+.+|+|++..++++...+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 455677888999999999655544443332 4799999987754 3334443 34689999999888764 67765
Q ss_pred EEE--ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 84 KLW--DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 84 ~IW--Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~IwDl~~~-~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
.|| |+.+++. ..+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .+.. .+..|+|||++|+
T Consensus 273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEE
Confidence 555 6666654 45566777788999999999877655 5677888876432 222223 3433 4678999999998
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEec
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl--~~~~~l~~~~~~~~~I~sl~fsp 237 (811)
.++.++ +.+||+.+++....... .....+.|+|+|.+|+.++.++.+.+|++ .++..+..+..+.+.+...+|+|
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 887765 55699998875433222 23356789999999999999998888875 35777888877878889999998
Q ss_pred C
Q 003556 238 D 238 (811)
Q Consensus 238 d 238 (811)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 4
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.61 E-value=2.1e-14 Score=146.05 Aligned_cols=200 Identities=23% Similarity=0.419 Sum_probs=157.5
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce-EEEec-----CCCCCeEEEEEcC--CCCEEEEEECCCeEEE
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLS-----GHTSGIDSVSFDS--SEVLVAAGAASGTIKL 85 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~-~~~l~-----~h~~~V~~l~fsp--dg~~Lasgs~DG~I~I 85 (811)
.|-+.|.|+.|.|++.+ +++-. |..|.+|++..+.. +..+. +|....++-+|+| +++.+++. .|+++..
T Consensus 121 eavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 34568999999995544 55544 78899999977655 33332 3566788889988 77788775 5999999
Q ss_pred EECCCCeEEEEE-cCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003556 86 WDLEEAKIVRTL-TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (811)
Q Consensus 86 WDl~t~~~v~~l-~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~-~~~i~~~~~h~~~I~si~fsp-dg~~L~sg 161 (811)
||+++.+....+ ..|...+..+.|+|+.+ +|++|+.||.|+|||.+. ..+++.+.+|...|+++.|+| ...++++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 999987766555 46888999999999877 688999999999999985 457889999999999999999 45678899
Q ss_pred ECCCeEEEEECCCC-----------------------------eEEEEEecCCCCeEEEEEeCCCC-EEEEEECCCeEEE
Q 003556 162 GEDNTVKLWDLTAG-----------------------------KLLHDFKCHEGQIQCIDFHPHEF-LLATGSADRTVKF 211 (811)
Q Consensus 162 s~Dg~I~IwDl~t~-----------------------------~~i~~~~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~I 211 (811)
+.|..|.+|-...- ..+..+..|...|++++|+.-.. ++|+-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999965321 13446777899999999998655 5677889999888
Q ss_pred EECCC
Q 003556 212 WDLET 216 (811)
Q Consensus 212 wDl~~ 216 (811)
=.+..
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 66543
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=4.3e-14 Score=154.02 Aligned_cols=278 Identities=16% Similarity=0.265 Sum_probs=183.0
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE------EecCCCCCeEEEEE-----cCCCCEEEEEECCCeEEEEE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------SLSGHTSGIDSVSF-----DSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~------~l~~h~~~V~~l~f-----spdg~~Lasgs~DG~I~IWD 87 (811)
+....++-.+.++.+-.++ .+++|+...+..+. .+.+ ..-.|-+| .+.+.-++.|-..|.|.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~--~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR--ELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCC--eEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 3344444434444444443 47888775322111 1121 22334444 35666788888899999999
Q ss_pred CCCCeEEEEEc----CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC--------------Ce--------------
Q 003556 88 LEEAKIVRTLT----GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK--------------KG-------------- 134 (811)
Q Consensus 88 l~t~~~v~~l~----~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~--------------~~-------------- 134 (811)
....+..+.+. -.+..++|+.|-|.++ .|+++-.+|.+++||... +.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 76633222221 1346899999999654 677778899999997631 11
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 135 ~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
++..+.-..+.|..++|+|||++|++.+.||.++|||..+.+++..++..-+...|++|+|||+||++|++|..|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 11111112346889999999999999999999999999998888877777788999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC------CEEEEEecCCcee---eeeeccccceeEeeec--CCCEEE
Q 003556 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE------SLKVFSWEPIRCH---DAVDVGWSRLSDLNVH--EGKLLG 283 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~~~~---~~~~~~~~~i~~l~~~--dg~lLa 283 (811)
...+.+..-++|..+|..++|.| |..+..+. .-..=++...... ........+...+.-. ....++
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfG 438 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFG 438 (636)
T ss_pred ccceEEEeccccccceeeEeecc---cccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEee
Confidence 99999999999999999999987 22221111 0000000000000 0000111111111111 235778
Q ss_pred EEECCCeEEEEEecCCCcee
Q 003556 284 CSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 284 sg~~Dg~V~IWdvd~~~~~p 303 (811)
+.+.|..+.+||+...-+.|
T Consensus 439 SVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 439 SVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccceEEEEecchhhccc
Confidence 88999999999999888876
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.5e-14 Score=147.64 Aligned_cols=190 Identities=20% Similarity=0.347 Sum_probs=152.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEE--EecCC-CCe
Q 003556 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHT-RGV 146 (811)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~--~~~h~-~~I 146 (811)
..++++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999987 356799999999999999997655443 34444 456
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCe-
Q 003556 147 NAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKL-LHDF-KCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE- 218 (811)
Q Consensus 147 ~si~fspdg~~L~sgs~----Dg~I~IwDl~t~~~-i~~~-~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~- 218 (811)
.|++..-.++.+++|+. +..|.+||+|..+. +..+ ..|...|++++|||. -.+|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67776667778888754 66899999998766 5544 468999999999995 5799999999999999997642
Q ss_pred --EEEEeCCCCCCeeEEEEecCC--CEEEEEECCCEEEEEecCCcee
Q 003556 219 --LIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPIRCH 261 (811)
Q Consensus 219 --~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~~~~ 261 (811)
.+.....+...|.++.|..++ ++......++..+|+|+.+.+.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 223334566779999999988 6555666778999999987653
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=8.2e-14 Score=143.87 Aligned_cols=240 Identities=17% Similarity=0.212 Sum_probs=183.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-C
Q 003556 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-K 133 (811)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-~ 133 (811)
...+|+|.+|++|+..++++..+..|.||..... +..+++..|...|+.++|.|..+.|++++.|..-++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4579999999999999999999999999988654 46788999999999999999999999999999999999843 3
Q ss_pred --eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----EEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 134 --GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL----HDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (811)
Q Consensus 134 --~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i----~~~~~h~~~V~sv~fspdg~~Lasgs~Dg 207 (811)
++...+..+...++++.|+|.++.|++|+....|.+|-+....-- +.-+.+...|+++.|||+.-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 334455668899999999999999999999999999887643321 12234567899999999999999999999
Q ss_pred eEEEEECC------------------CCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCc-eeeeeecc
Q 003556 208 TVKFWDLE------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVG 267 (811)
Q Consensus 208 ~I~IwDl~------------------~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-~~~~~~~~ 267 (811)
.+++|..- -|+++.++....+.+..+.|+|+|..|+-.+.+ .+.+-|..... ....+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99998642 133444455567889999999999999965555 56665554332 33333334
Q ss_pred ccceeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 268 ~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
.-+...+.+-....++++++|..=.++..+
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred cCCceeeEeecCCceeecCCCCCceEEEec
Confidence 455556666566666666666544444443
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=145.59 Aligned_cols=245 Identities=18% Similarity=0.344 Sum_probs=188.3
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003556 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~Iw 128 (811)
.+...+.+|.+.|+++.|..+++ |++|...|.|++|++.+......+. .+...|+.+.--|+ +.+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45667789999999999988876 7799999999999999998888888 56778888888886 678888899999999
Q ss_pred ECCCCeEEE--------------EEe---------------------------------------cCCCCeEEEEEcC-C
Q 003556 129 DIRKKGCIH--------------TYK---------------------------------------GHTRGVNAIRFTP-D 154 (811)
Q Consensus 129 Dl~~~~~i~--------------~~~---------------------------------------~h~~~I~si~fsp-d 154 (811)
++.-+..+. .+. +..+.+.|..+.- +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 986522111 000 0112344444322 2
Q ss_pred CC--EEEEEECCCeEEEEECCCCeEE----------EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC--e--
Q 003556 155 GR--WVVSGGEDNTVKLWDLTAGKLL----------HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--E-- 218 (811)
Q Consensus 155 g~--~L~sgs~Dg~I~IwDl~t~~~i----------~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~--~-- 218 (811)
+. ++++|.++|.+.+||+.++..+ .....|..+|.++.|.+.-..=++|+.+..+..|++... .
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 22 5678889999999999998443 334468889999999886556677888888999988642 2
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeeecCC-CEEEEEECCCeEEEEEe
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg-~lLasg~~Dg~V~IWdv 296 (811)
.-.........+..+..-||++.+++++.| .|+||.|.+...+.++..+...+.++.++.+ .++|+++.|+.|.+|++
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222233445678899999999999987665 6999999999999999988888889888554 99999999999999985
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.4e-13 Score=155.32 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=147.3
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE--EEEEcCCCCCeEEEEEeCC
Q 003556 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF 112 (811)
Q Consensus 38 Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~--v~~l~~h~~~I~sl~fspd 112 (811)
+..|.+||..... ...+..|...+....|+|+|+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986444 56677788899999999999999887654 4799999988754 3333333 346899999
Q ss_pred CCEEEEEE-CCCcEE--EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEecCCCC
Q 003556 113 GEFFASGS-LDTNLK--IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEGQ 187 (811)
Q Consensus 113 g~~Lasgs-~Dg~I~--IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~~ 187 (811)
|+.|+.++ .+|.+. +||+.++. ...+..+...+....|+|||++|+.++ .+|...||++... .....+ .+.+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 99888764 677654 55766655 445556677788999999999887665 5677788876432 222223 2333
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 188 V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
....|+|+|++|+.++.++ +.+||+.+++........ ....+.|+|||++|+.++.+ +..+|.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4578999999999888765 566999988754332222 23567899999999977654 5666654
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=3.2e-14 Score=156.66 Aligned_cols=241 Identities=20% Similarity=0.326 Sum_probs=176.9
Q ss_pred EcCCCCEEEE--EECCCeEEEEECCCC-eE----EEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCe----
Q 003556 67 FDSSEVLVAA--GAASGTIKLWDLEEA-KI----VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKG---- 134 (811)
Q Consensus 67 fspdg~~Las--gs~DG~I~IWDl~t~-~~----v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~---- 134 (811)
|+.+...+++ .+..|.|.||++... +. +-.+. ....|+.+.|.|.. ..|++++.||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344445443 456799999999753 21 22222 45679999999954 589999999999999987543
Q ss_pred ---EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003556 135 ---CIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (811)
Q Consensus 135 ---~i~~~~~h~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 210 (811)
+-..+..|...|+++.|+| -...|++++.|.+|++||+++++....+.+|.+.|..++|+|+|+.+|+.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 4456788999999999999 456889999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeE-EEEeCCC-CCCeeEEEEecCCCEEEEEECC-----CEEEEEecCCce----eeeeeccccceeEeeec-C
Q 003556 211 FWDLETFEL-IGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIRC----HDAVDVGWSRLSDLNVH-E 278 (811)
Q Consensus 211 IwDl~~~~~-l~~~~~~-~~~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~~~~----~~~~~~~~~~i~~l~~~-d 278 (811)
+|.-++++. +..-.+. ...-..+.|--||+++++.+-+ .+.+|+-..... ...+++.-+.+....-. .
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 999987653 3332222 2333567888899998865433 388888765432 12334444433333223 3
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeeccce
Q 003556 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVT 310 (811)
Q Consensus 279 g~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~ 310 (811)
+-++.+|-.|..|..|.+-- -.||.....+
T Consensus 826 ~~lfltGKGD~~v~~yEv~~--esPy~lpl~~ 855 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIY--ESPYLLPLAP 855 (1012)
T ss_pred ceEEEecCCCceEEEEEecC--CCceeeeccc
Confidence 55777888899999987654 4566666554
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2e-12 Score=148.75 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=202.2
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC---CEEEEEECC
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE---VLVAAGAAS 80 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~D 80 (811)
....+...+.+-...=....|++ ++++++... +..|.||...++.++..+.+|..++..+.+.|.. .++++++.+
T Consensus 4 e~~~~~~~lgg~n~~~~~avfSn-D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~ 81 (792)
T KOG1963|consen 4 ESGGKPALLGGRNGNKSPAVFSN-DAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLD 81 (792)
T ss_pred ccccceeeeccccceeccccccc-CCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecC
Confidence 34444554544444444456887 445454443 4679999999999999999999999999997754 477899999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCC---------------------------------------------------------
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSN--------------------------------------------------------- 103 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~--------------------------------------------------------- 103 (811)
|.|++||...+..++++..+...
T Consensus 82 G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~ 161 (792)
T KOG1963|consen 82 GTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ 161 (792)
T ss_pred ccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc
Confidence 99999999988877765422110
Q ss_pred -eEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---
Q 003556 104 -CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA--- 174 (811)
Q Consensus 104 -I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~-----~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t--- 174 (811)
-.++.+++.|.+.+.. .+..+.+|+...+. .... ..|...+++.+++|.++++++|..||.|.+|.--.
T Consensus 162 ~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 162 EPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred CCccEEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence 0122222333333332 23447777776544 1111 23666689999999999999999999999996432
Q ss_pred -CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEE
Q 003556 175 -GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKV 252 (811)
Q Consensus 175 -~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~V 252 (811)
......+.-|...|+++.|+++|.+|++|+..|.+.+|.+.+++ ..-+.--.++|..+.++||+.+.+....| .|.+
T Consensus 240 ~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 240 DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 22345566688999999999999999999999999999999988 33344457889999999999988766554 6777
Q ss_pred EEecCCceeeeeec-----------cccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 253 FSWEPIRCHDAVDV-----------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 253 wd~~~~~~~~~~~~-----------~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
...........+.. ..+....+.+ +.-+.++-.+..|+|.+||+-+....
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 76644332222111 1112222333 23456667778899999998876655
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=156.68 Aligned_cols=215 Identities=25% Similarity=0.392 Sum_probs=165.9
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec-CCCCCeEEEEEcC--CCCEEEEEECCCeE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDS--SEVLVAAGAASGTI 83 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~DG~I 83 (811)
-.-+++.||++.|+|++|+. +|.+|++|++|-.+.|||.-..+.++.+. +|...|.++.|-| +.+++++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34568999999999999998 77899999999999999998777777664 8999999999987 45689999999999
Q ss_pred EEEECCC----------CeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeE-------EE---EEecC
Q 003556 84 KLWDLEE----------AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGC-------IH---TYKGH 142 (811)
Q Consensus 84 ~IWDl~t----------~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~-------i~---~~~~h 142 (811)
++||+.. ......+..|...|..++..|++ ..|.+++.||+|+-||++.... .. .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974 23445566788999999999998 6899999999999999986321 11 11112
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Ce----------EEEEEec-CC-----------CCeEEE
Q 003556 143 TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA--------GK----------LLHDFKC-HE-----------GQIQCI 191 (811)
Q Consensus 143 ~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t--------~~----------~i~~~~~-h~-----------~~V~sv 191 (811)
--...|+..+| +..+|++|+.|-..++||.+. +. ++..|.. |- ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 23467889998 567899999999999999532 11 2222321 11 115668
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 192 DFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (811)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~ 222 (811)
.|+|+|.-|++.-....|+++|+..++....
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 8999998777776667899999987765443
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.2e-14 Score=150.25 Aligned_cols=195 Identities=19% Similarity=0.301 Sum_probs=154.8
Q ss_pred EEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
.+++|+. ++..+++|+.||+++||++.....+.....|...|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899998 66789999999999999998888888888999999999999999999999999 899999999976666542
Q ss_pred --CCCCeEEEEEeCCC---CEE--EEEECCCcEEEEECCCCeE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 100 --HRSNCISVDFHPFG---EFF--ASGSLDTNLKIWDIRKKGC-----IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 100 --h~~~I~sl~fspdg---~~L--asgs~Dg~I~IwDl~~~~~-----i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
-......+.|+.++ .++ +.....+.|..||+....- ..+.......|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23345677888776 332 2333445677766542211 11111123469999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 168 KLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 168 ~IwDl~t~~~i~~~~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
.|++..+-+.++.++ .|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999998887777665 5889999999999999999999898888876643
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.6e-14 Score=150.05 Aligned_cols=194 Identities=21% Similarity=0.319 Sum_probs=153.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-
Q 003556 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG- 141 (811)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~- 141 (811)
.+++|+.+|..+++|+.||++++|++.+...+.....|...|.++.|+|||++|++-+.| ..+||+++++-++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 578999999999999999999999998888888888899999999999999999999999 899999999977666542
Q ss_pred -CCCCeEEEEEcCCC---C--EEEEEECCCeEEEEECCCCeE-----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003556 142 -HTRGVNAIRFTPDG---R--WVVSGGEDNTVKLWDLTAGKL-----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (811)
Q Consensus 142 -h~~~I~si~fspdg---~--~L~sgs~Dg~I~IwDl~t~~~-----i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 210 (811)
.......+.|+.|+ . .++.....+.|+.||+....- ..+.......|.+++.+++|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23446678888776 2 233333456677776653221 111122345799999999999999999999999
Q ss_pred EEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEEEC-CCEEEEEecC
Q 003556 211 FWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEP 257 (811)
Q Consensus 211 IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~ 257 (811)
||+..+.+.++.. +.|...|+.+.|+||.++++.-+. ....|..+..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999988877654 678889999999999999986544 4566665543
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.5e-12 Score=136.27 Aligned_cols=277 Identities=15% Similarity=0.285 Sum_probs=185.9
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC----
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEE---- 90 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~-h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t---- 90 (811)
..+..++|++ .-..++++..|-.|++|+-.. ++...++. ....|+|++|-|.+ ..|+.|+..| |.+|....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 4678899998 555688889999999999765 55445543 45689999999854 4666766555 99998642
Q ss_pred CeE----------EEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 91 AKI----------VRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 91 ~~~----------v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
+.. +....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 111 1222344 67999999999999999875 56899999999887665544556799999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC----C--------e---EEEE--
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET----F--------E---LIGS-- 222 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~----~--------~---~l~~-- 222 (811)
++..|+..++|...............+.|...+|+|+|.+|+.... |.-++|.+.- . + ++..
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965543333333345669999999999987666553 2334444321 0 0 1111
Q ss_pred ---eCC----CCCCeeEEEEecCCCEEEEEECCC---------EEEEEecCCceeeee-----eccccceeEee--ecCC
Q 003556 223 ---AGP----ETSGVRCLTFNPDGRTLLCGLHES---------LKVFSWEPIRCHDAV-----DVGWSRLSDLN--VHEG 279 (811)
Q Consensus 223 ---~~~----~~~~I~sl~fspdg~~Lasgs~d~---------I~Vwd~~~~~~~~~~-----~~~~~~i~~l~--~~dg 279 (811)
+.. -.+++.+++|.|.|.+|++...++ |.+|+....-..... .......-++. ..++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 111 156789999999999999886553 333433222111111 11111111111 1567
Q ss_pred CEEEEEECCCeEEEEEecC
Q 003556 280 KLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 280 ~lLasg~~Dg~V~IWdvd~ 298 (811)
.+|..+.+-|.+.-|++..
T Consensus 414 ~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred cEEEEEeccCceEeeeeEE
Confidence 8888888888888777664
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=1.4e-12 Score=133.15 Aligned_cols=281 Identities=14% Similarity=0.237 Sum_probs=196.3
Q ss_pred cceeEEEEecCCCCEEEEEEe--eCCCcEEEEEEC----CCeEEEEECC--CCceEEEe-cCCCCCeEEEEEcCCCC---
Q 003556 5 RAYKLQEFVAHSSTVNCLKIG--RKSSRVLVTGGE----DHKVNLWAIG--KPNAILSL-SGHTSGIDSVSFDSSEV--- 72 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafs--p~~~~lLatgs~----Dg~I~VWdl~--t~~~~~~l-~~h~~~V~~l~fspdg~--- 72 (811)
+...+.++.++- .+.++.|+ |+.+..|+.|+. .++|.|..+. +++.+..- ..|.-+++.+.|.|+..
T Consensus 34 r~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 444566666553 68899998 345567888863 3567776553 33333221 25889999999999763
Q ss_pred --EEEEEECCCeEEEEECCC--CeEE--EEE-----cCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCe---EEE
Q 003556 73 --LVAAGAASGTIKLWDLEE--AKIV--RTL-----TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKG---CIH 137 (811)
Q Consensus 73 --~Lasgs~DG~I~IWDl~t--~~~v--~~l-----~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~---~i~ 137 (811)
+||+. +..+++|.+.. .+.. ..+ ..+..+++++.|+. +-++|.+++-|.+..|||++++. ...
T Consensus 113 pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 55554 56799999873 2211 111 23567899999987 45689999999999999999863 355
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCC-CEEEEEECC-CeEEE
Q 003556 138 TYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFK---CHEGQIQCIDFHPHE-FLLATGSAD-RTVKF 211 (811)
Q Consensus 138 ~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~---~h~~~V~sv~fspdg-~~Lasgs~D-g~I~I 211 (811)
.+-.|...|..++|...+ ..|++.+.||.+++||++..+.-..+- ....+...++|+++. +++|+-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 677899999999999854 478899999999999999765333322 224578889998854 577776554 47999
Q ss_pred EECCC-CeEEEEeCCCCCCeeEEEEecC-CCEEEEEECC-CEEEEEecCCceeeee-----eccccceeEeee--cCCCE
Q 003556 212 WDLET-FELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRCHDAV-----DVGWSRLSDLNV--HEGKL 281 (811)
Q Consensus 212 wDl~~-~~~l~~~~~~~~~I~sl~fspd-g~~Lasgs~d-~I~Vwd~~~~~~~~~~-----~~~~~~i~~l~~--~dg~l 281 (811)
.|++. ..++..++.|.+.|+.++|.|. ...|+++++| ..-+||+...-..... -.....+..+.+ ..+..
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 99986 5678889999999999999996 4567777777 5889998753321110 012233444444 34577
Q ss_pred EEEEECC
Q 003556 282 LGCSYNQ 288 (811)
Q Consensus 282 Lasg~~D 288 (811)
+++++..
T Consensus 351 iai~~~k 357 (364)
T KOG0290|consen 351 IAICFGK 357 (364)
T ss_pred EEEEecC
Confidence 8877765
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=9.8e-12 Score=128.69 Aligned_cols=234 Identities=16% Similarity=0.280 Sum_probs=166.7
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECC------CeEEEEECCC
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAAS------GTIKLWDLEE 90 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------G~I~IWDl~t 90 (811)
....++|.- +...+++|.++| .+||+.+--+.......+.+.+.-+..--..++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 344589987 556677787777 999998654433333323333222222223344443 3332 4799999777
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCC--CCeEEEEEcCCCCEEEE-EECCCe
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHT--RGVNAIRFTPDGRWVVS-GGEDNT 166 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i~~~~~h~--~~I~si~fspdg~~L~s-gs~Dg~ 166 (811)
.+++.++. ...+|.++.+.+ +.|++.- .+.|++|... +.+.++.+.... ....+++-+.....|+. |-.-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77888887 778999999985 4566664 5789999987 455555554322 23444433334444443 345699
Q ss_pred EEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCeEEEEeCC--CCCCeeEEEEecCCCE
Q 003556 167 VKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRT 241 (811)
Q Consensus 167 I~IwDl~t~~~--i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~-I~IwDl~~~~~l~~~~~--~~~~I~sl~fspdg~~ 241 (811)
|.|-|+...+. ...+..|.+.|.|++++-+|.++|+++..|+ |+|||..+|+++.+++- ....|.+++|||++.+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999987655 4677889999999999999999999999996 89999999999998753 3467999999999999
Q ss_pred EEEEECC-CEEEEEecC
Q 003556 242 LLCGLHE-SLKVFSWEP 257 (811)
Q Consensus 242 Lasgs~d-~I~Vwd~~~ 257 (811)
|+++++. +++||.+..
T Consensus 241 LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCeEEEEEeec
Confidence 9999887 599999875
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=7.3e-13 Score=155.87 Aligned_cols=258 Identities=17% Similarity=0.221 Sum_probs=190.2
Q ss_pred EECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 44 WAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 44 Wdl~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t~-------~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++||+..- +...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 478888888999999999987655 89999999999999998531 223344445678999999999999
Q ss_pred EEEEECCCcEEEEECCCCe-------EEEEEecCC-CC-eEEEEEcC-CCC-EEEEEECCCeEEEEECCCCeEEEEEe--
Q 003556 116 FASGSLDTNLKIWDIRKKG-------CIHTYKGHT-RG-VNAIRFTP-DGR-WVVSGGEDNTVKLWDLTAGKLLHDFK-- 182 (811)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~-------~i~~~~~h~-~~-I~si~fsp-dg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~-- 182 (811)
+|+++.||.|.+.++.... +......+. +. +..-+|.. .+. .++.+..-+.|..||++.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 112222222 22 33333433 233 78888889999999999876655544
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEecCC---CEEEEEEC---CCEEEEEe
Q 003556 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDG---RTLLCGLH---ESLKVFSW 255 (811)
Q Consensus 183 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~-~~~~~I~sl~fspdg---~~Lasgs~---d~I~Vwd~ 255 (811)
...|.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|+.+..+|-. .+.++++. +-+.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 346789999999999999999999999999999888887763 456788888887743 45554433 35999999
Q ss_pred cCCceeeeeecc-------c-------------cceeEeeecCCCEEEEEECCCeEEEEEecCCCce
Q 003556 256 EPIRCHDAVDVG-------W-------------SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 256 ~~~~~~~~~~~~-------~-------------~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
..+.|..++-.. | ..+.+.....+.++.+|+.|..|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999887765333 1 0112222245679999999999999998876655
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.2e-14 Score=151.92 Aligned_cols=289 Identities=16% Similarity=0.240 Sum_probs=219.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSS--EVLVAAGAASGTIKL 85 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~DG~I~I 85 (811)
...+..|.+.|+.+.|.. .+.+|++|+.|..|.+||+..+.....+. +|...|....|-|. ...+++++.||.+++
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 457889999999999998 77899999999999999998888777664 79999999899774 457889999999998
Q ss_pred EECCCCe-E--EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEE---ecCCC---CeEEEEEcCCC
Q 003556 86 WDLEEAK-I--VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY---KGHTR---GVNAIRFTPDG 155 (811)
Q Consensus 86 WDl~t~~-~--v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~~---~~h~~---~I~si~fspdg 155 (811)
-.+.... + ...+..|.+.|.-++.-|+.. .|.+++.|+.+.-+|++....-..+ +.+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8765333 2 234556999999999999765 5899999999999999877654333 22333 46788888854
Q ss_pred -CEEEEEECCCeEEEEECCCCe------EEEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--C---
Q 003556 156 -RWVVSGGEDNTVKLWDLTAGK------LLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLET--F--- 217 (811)
Q Consensus 156 -~~L~sgs~Dg~I~IwDl~t~~------~i~~~~~------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~--~--- 217 (811)
..+++|+.|-.+++||.+.-. .+..|.. ..-.|+++.|+.++.-|.++..|-.|+++.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 488999999999999987532 1233322 234699999998877777777788899995332 2
Q ss_pred -------eEEEE-eCCCC--CCeeEEEE-ecCCCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeeecC-CCEEEE
Q 003556 218 -------ELIGS-AGPET--SGVRCLTF-NPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGC 284 (811)
Q Consensus 218 -------~~l~~-~~~~~--~~I~sl~f-spdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~i~~l~~~d-g~lLas 284 (811)
..+.. +++|. ..|..+-| -|...|+++|++.+ |-||+-.+.+.+..+......+.++..|. -.+||+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 12222 56663 34677765 57889999998875 77777777777777777777777887754 479999
Q ss_pred EECCCeEEEEEecC
Q 003556 285 SYNQSCVGVWVVDI 298 (811)
Q Consensus 285 g~~Dg~V~IWdvd~ 298 (811)
++-|.-|+||...+
T Consensus 454 SGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLT 467 (559)
T ss_pred cCCccceeeecCCc
Confidence 99999999996643
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=4e-12 Score=133.83 Aligned_cols=235 Identities=18% Similarity=0.279 Sum_probs=180.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEEEECCCCeEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCI 136 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg--~I~IwDl~~~~~i 136 (811)
...+..+.|+.+...|..|+.|| .++|..+..............|.-+-|+ ..++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577778999999999999888 6788776544322222223345555565 45666666543 5999999988888
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEE--CCCeEEE
Q 003556 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGS--ADRTVKF 211 (811)
Q Consensus 137 ~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~V~sv~fspdg~~Lasgs--~Dg~I~I 211 (811)
..+. ....|.++.+.. +.|++.-.+ .|+|||+++-+.++++.. +...+.++.+++.+.+||--+ ..|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7776 567799999974 456666544 499999999999888764 334466666666677888643 4689999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCC--EEEEEecCCceeeeeecccc--ceeEeee-cCCCEEEEEE
Q 003556 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWS--RLSDLNV-HEGKLLGCSY 286 (811)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~~--~i~~l~~-~dg~lLasg~ 286 (811)
||+.+.+.+..+..|.+.+.+++|+++|.+||++++.+ |+||....+.....+.-+.. .++.+.+ +++++|++++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999999999999999999986 99999998888777766554 3555655 6889999999
Q ss_pred CCCeEEEEEecCCC
Q 003556 287 NQSCVGVWVVDISR 300 (811)
Q Consensus 287 ~Dg~V~IWdvd~~~ 300 (811)
+.++|.||.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 99999999998765
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.7e-13 Score=140.62 Aligned_cols=246 Identities=17% Similarity=0.253 Sum_probs=185.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcE
Q 003556 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE------AKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNL 125 (811)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t------~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I 125 (811)
+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999853 35555443 356899999999988999999999999
Q ss_pred EEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEE--ecCCCCeEEEEEeCCC-CE
Q 003556 126 KIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHDF--KCHEGQIQCIDFHPHE-FL 199 (811)
Q Consensus 126 ~IwDl~~~~~i~~~~~--h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~--~~h~~~V~sv~fspdg-~~ 199 (811)
.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... .+..+ .........+.|+|.. .+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999998887762 22489999999999999999999999999998754 22222 2234567889999964 57
Q ss_pred EEEEECCCeEEEEECCCCeE-EEE------eCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeee-ee---cc
Q 003556 200 LATGSADRTVKFWDLETFEL-IGS------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-VD---VG 267 (811)
Q Consensus 200 Lasgs~Dg~I~IwDl~~~~~-l~~------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~-~~---~~ 267 (811)
|++.+..+-+.+||.+.... +.. +......-.++.|+|+|..+.+--.+ --.+||+-..+|.-. .+ .+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 88888889999999986432 221 11112233567899999888765444 345677777665422 11 12
Q ss_pred c---cceeEeeecCCCEEEEEECCCeEEEEEecC
Q 003556 268 W---SRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 268 ~---~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
+ ..+..+.+.+...+++|+.+-.|++|.+.-
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 2 234455566777799999999999998754
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.6e-13 Score=155.22 Aligned_cols=240 Identities=20% Similarity=0.375 Sum_probs=174.5
Q ss_pred CCEEEEEEee-CCCcEEEEEECCCeEEEEEC-----CCCceEEEecC---C----CCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 17 STVNCLKIGR-KSSRVLVTGGEDHKVNLWAI-----GKPNAILSLSG---H----TSGIDSVSFDSSEVLVAAGAASGTI 83 (811)
Q Consensus 17 ~~V~~lafsp-~~~~lLatgs~Dg~I~VWdl-----~t~~~~~~l~~---h----~~~V~~l~fspdg~~Lasgs~DG~I 83 (811)
..|+.+.+-. ++..++.+|+.||.|+||+- .+.+.+....+ + .+.=.-+.|..+..+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4688888754 45568999999999999974 22233333221 1 1111346777666667677778999
Q ss_pred EEEECCCCeEEEEEcC-CCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCC--eEEEEEcCCCC
Q 003556 84 KLWDLEEAKIVRTLTG-HRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRG--VNAIRFTPDGR 156 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~~-h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~---~i~~~~~h~~~--I~si~fspdg~ 156 (811)
+|||......+..+.. ....++++.-.- .|+.|++|..||.|++||.+... .+..++.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998887777653 334556554433 46899999999999999988543 46778888877 99999998665
Q ss_pred E-EEEEECCCeEEEEECCCCeEEE--EEecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC------
Q 003556 157 W-VVSGGEDNTVKLWDLTAGKLLH--DFKCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG------ 224 (811)
Q Consensus 157 ~-L~sgs~Dg~I~IwDl~t~~~i~--~~~~h---~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~------ 224 (811)
- |++|+.+|.|++||++...... .+..| .+..+++..|++...+|+|+. +.|+||++...+ +..++
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc
Confidence 4 9999999999999999742222 22222 235999999999999999998 999999987433 32222
Q ss_pred -CCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCC
Q 003556 225 -PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (811)
Q Consensus 225 -~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (811)
...+.+.|++|||-.-.|++|..| .+.||..+..
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 234567999999999999999877 4888876654
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.1e-12 Score=145.03 Aligned_cols=222 Identities=11% Similarity=0.088 Sum_probs=154.9
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEE--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC--eEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG--TIK 84 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs--~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~DG--~I~ 84 (811)
+.+..+...+.+.+|+|++..++++.. .+..|++|++.+++... +......+..+.|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445566778999999996655554443 23579999998775433 22233345568999999988765 3444 599
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003556 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sg 161 (811)
+||+.+++..+.. .+...+....|+|+|+.|+..+.+ + .|+++|+.++.. ..+..+........|+|||++|+..
T Consensus 271 ~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEE
Confidence 9999988765443 345567889999999988877754 3 466667776654 3343344456678999999999876
Q ss_pred ECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe---EEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003556 162 GED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT---VKFWDLETFELIGSAGPETSGVRCLTF 235 (811)
Q Consensus 162 s~D---g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~---I~IwDl~~~~~l~~~~~~~~~I~sl~f 235 (811)
+.+ ..|.+||+.+++.. .+.. ........|+|||.+|+.++.++. +.++++. +.....+..+.+.+...+|
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAW 425 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCccc
Confidence 644 35889999888644 3332 223356789999999999987764 7778874 4555566667777888889
Q ss_pred ec
Q 003556 236 NP 237 (811)
Q Consensus 236 sp 237 (811)
+|
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 87
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=149.13 Aligned_cols=138 Identities=16% Similarity=0.365 Sum_probs=120.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC--------------CceE--------------EEecCCCCCeEEEEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--------------PNAI--------------LSLSGHTSGIDSVSF 67 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t--------------~~~~--------------~~l~~h~~~V~~l~f 67 (811)
+..|+|+.|-|.+..+++++..+|.+++||... +... ..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888888999999999997521 1111 111112457888999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE
Q 003556 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN 147 (811)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~ 147 (811)
+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||+||++|+.|..|.||.+..++.+..-.+|+..|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEcC
Q 003556 148 AIRFTP 153 (811)
Q Consensus 148 si~fsp 153 (811)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999997
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.2e-12 Score=138.56 Aligned_cols=224 Identities=21% Similarity=0.344 Sum_probs=173.2
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCC-EEEEEECC--Ce
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEV-LVAAGAAS--GT 82 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~----~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~D--G~ 82 (811)
........+|..++.. ++ .|++|-.+|.+.+|....+ ..+..+..+ .++..+.-++... ++++|+.. ..
T Consensus 99 ~~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 99 KTVSLGTKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred cccccccccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 3444455666666665 33 4888899999999998633 233333333 5566676666554 55568888 88
Q ss_pred EEEEECCCCeEEEEEcCCC---------CCeEEEEEeCC--CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHR---------SNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIR 150 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~---------~~I~sl~fspd--g~~Lasgs~Dg~I~IwDl~~~-~~i~~~~~h~~~I~si~ 150 (811)
+.+||++..+.+..-+.-. -.++++.|-+. ...|++++.-+.+++||.+.+ +++..+.-...+++++.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 9999999887666544321 24678889886 678999999999999999865 46778877788999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC
Q 003556 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (811)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~ 229 (811)
..|+|+++++|..-|.+..||++.++.... +++..+.|.++..||.+.+||+++-|+.|+|+|+++.+++...-. ...
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~ 333 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSR 333 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hcc
Confidence 999999999999999999999999998887 788899999999999999999999999999999999777655422 234
Q ss_pred eeEEEEecC
Q 003556 230 VRCLTFNPD 238 (811)
Q Consensus 230 I~sl~fspd 238 (811)
++++.+.++
T Consensus 334 lt~il~~~~ 342 (412)
T KOG3881|consen 334 LTFILLRDD 342 (412)
T ss_pred ccEEEecCC
Confidence 566655543
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1e-11 Score=142.26 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=148.6
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
..|.+||.. +.....+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378888875 4555667778889999999999998887764 468999999888653 34456667788999999997
Q ss_pred EE-EEECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeE
Q 003556 116 FA-SGSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (811)
Q Consensus 116 La-sgs~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~V~ 189 (811)
|+ +.+.++ .|++||+.++.. ..+..+........|+|||++|+..+. +| .|++||+..+.... +..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 75 445555 488889987765 445556666778999999999987764 33 68889987665433 333455567
Q ss_pred EEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 190 CIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 190 sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
...|+|+|++|+....+ ..|.+||+..+.. ..+.. ...+....|+|||+.|+....
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 78999999999887653 3688899865543 22322 234678899999999886543
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=149.94 Aligned_cols=208 Identities=24% Similarity=0.468 Sum_probs=158.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-cCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEE
Q 003556 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPF--GEFFASGSLDTNLKIWD 129 (811)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l-~~h~~~I~sl~fspd--g~~Lasgs~Dg~I~IwD 129 (811)
..+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|. ...+++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 467899999999999999999999999999999999888877776 589999999999994 45899999999999999
Q ss_pred CCCC----------eEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEE----------EEecCCCCe
Q 003556 130 IRKK----------GCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLH----------DFKCHEGQI 188 (811)
Q Consensus 130 l~~~----------~~i~~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~----------~~~~h~~~V 188 (811)
+... .....+..|...|..|+-.|++ +.+.++++||+|+-||++...... .+...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9842 2345566788889999999988 789999999999999998732111 111112346
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCC--------Ce----------EEEEeC-CC-----------CCCeeEEEEec
Q 003556 189 QCIDFHPH-EFLLATGSADRTVKFWDLET--------FE----------LIGSAG-PE-----------TSGVRCLTFNP 237 (811)
Q Consensus 189 ~sv~fspd-g~~Lasgs~Dg~I~IwDl~~--------~~----------~l~~~~-~~-----------~~~I~sl~fsp 237 (811)
.|+..+|. ..+||+|+.|-..++||.+. +. ++.-+. +| ...++.+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 78889995 56899999999999999432 11 111111 11 11256678999
Q ss_pred CCCEEEEEECC-CEEEEEecCCce
Q 003556 238 DGRTLLCGLHE-SLKVFSWEPIRC 260 (811)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~~~~~ 260 (811)
+|.-|++...+ .+.+|++...+.
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCC
Confidence 99888877544 577777765544
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=7.5e-11 Score=131.51 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=190.4
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKL 85 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~I 85 (811)
..+.++......-..+.|+| +++++++++.||.|.++|+.+.+.+.++... ....++++++||++++++. ..+.+.+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeE
Confidence 34556665544444577888 6677888889999999999999999998854 3467899999999998775 5899999
Q ss_pred EECCCCeEEEEEcCC-------CCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCC
Q 003556 86 WDLEEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 86 WDl~t~~~v~~l~~h-------~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~-~~~~h~~~I~si~fspdg~ 156 (811)
+|.++.+.++.+... ...+..+..+|....++..-. .+.|.+.|....+.+. +............|+|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 999999999887632 346778888888886666655 4889888987654332 2222455678899999999
Q ss_pred EEEEE-ECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCC----------CCEEEEEECCCeEEEEECCCCeEEE
Q 003556 157 WVVSG-GEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPH----------EFLLATGSADRTVKFWDLETFELIG 221 (811)
Q Consensus 157 ~L~sg-s~Dg~I~IwDl~t~~~i~~~~~----h~~~V~sv~fspd----------g~~Lasgs~Dg~I~IwDl~~~~~l~ 221 (811)
+++.+ ..+..|-++|..+++.+..+.. |..++..+ .||. +...++.-....+.+||...++.+.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 88765 4567899999999988776642 33333332 2332 2222222223356679999999999
Q ss_pred EeCCCCCCeeEEEEecCCCEEEEE---ECC--CEEEEEecCCceeeeeecccc--ceeEeeecCCCEEEEE-ECC-CeEE
Q 003556 222 SAGPETSGVRCLTFNPDGRTLLCG---LHE--SLKVFSWEPIRCHDAVDVGWS--RLSDLNVHEGKLLGCS-YNQ-SCVG 292 (811)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasg---s~d--~I~Vwd~~~~~~~~~~~~~~~--~i~~l~~~dg~lLasg-~~D-g~V~ 292 (811)
.+....++ ..+..||+++++++. ..+ .+.|+|.++.+....+..... .+..-+..+|+.+..+ ... +.|.
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~ 342 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIV 342 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEE
Confidence 99887777 888889999999988 333 699999998866555543332 3333334788755544 333 3799
Q ss_pred EEEecCCCceeeee
Q 003556 293 VWVVDISRIEPYTI 306 (811)
Q Consensus 293 IWdvd~~~~~p~~~ 306 (811)
|||..+-++.....
T Consensus 343 v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 343 VYDAKTLKEKKRIP 356 (369)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCcEEEEEEE
Confidence 99999988775544
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=7.4e-12 Score=137.67 Aligned_cols=276 Identities=11% Similarity=0.157 Sum_probs=202.7
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (811)
.|...-+.|..+||+..++++|..--.|++||+.+-..- +..| ...|.-.-++.|-.-++.-..|.+|.+..- -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 577788899999988888999999999999998654433 3333 345555555666555555566777766542 22
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
... .+. -......++++.-..-|++++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|-.||
T Consensus 126 ~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 RHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 211 111 123345666765455555566667899999999999999988889999999999988999999999999999
Q ss_pred CCCCeEEEEEec------CCC-----CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEecC-
Q 003556 172 LTAGKLLHDFKC------HEG-----QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPD- 238 (811)
Q Consensus 172 l~t~~~i~~~~~------h~~-----~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspd- 238 (811)
.+....+..+.. |.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+++..- ....-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 998766655542 222 3999999999999999999999999999998877654 344668999999775
Q ss_pred -CCEEEEEECCCEEEEEecCCceeeeeeccccceeEe-eecCCCEEEEEECCCeEEEEE
Q 003556 239 -GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 239 -g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l-~~~dg~lLasg~~Dg~V~IWd 295 (811)
+..+++.....++||+-.+++....+..... +.++ .++++.++.++-+++.+..|-
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred CCceEEecchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCcceeEE
Confidence 4556665555799999998888766654443 4444 347788888888777665553
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.9e-11 Score=138.10 Aligned_cols=203 Identities=12% Similarity=0.093 Sum_probs=143.0
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003556 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~L 116 (811)
.|.+||.+.... ..+..+...+...+|+|||+.|+..+. +..|.+||+.+++.... ...........|+|+|+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 688999865443 334456678999999999998886542 45799999988864332 2233344568999999988
Q ss_pred EEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEE
Q 003556 117 ASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (811)
Q Consensus 117 asg-s~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~V~s 190 (811)
+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+.........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 4444 59999998876544 33345567889999999999877764 3 4666677766543 33334445667
Q ss_pred EEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 191 IDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 191 v~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
..|+|+|++|+..+.+ ..|++||+.+++....... .......|+|||++|+.++.+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcC
Confidence 8999999999887644 3688999988865432222 223567899999999877655
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=8.1e-14 Score=157.95 Aligned_cols=251 Identities=20% Similarity=0.322 Sum_probs=191.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003556 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (811)
Q Consensus 52 ~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~ 131 (811)
+..+.+|-..|+|+.|...|.++++|+.|..++||..+++.++....||.+.|+.++.+..+.++++++.|..|++|-+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34466899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE---Ee-cCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD---FK-CHEGQIQCIDFHPHEFLLATGSADR 207 (811)
Q Consensus 132 ~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~---~~-~h~~~V~sv~fspdg~~Lasgs~Dg 207 (811)
.+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.+.. .+ .....+.++.|..++.-+++|+.|+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999954 678999999999982111111 01 1234577788888899999999999
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEecCC-CEEEEEEC-CCEEEEEecCCceeeeeeccccceeEeeec--CCCEEE
Q 003556 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLG 283 (811)
Q Consensus 208 ~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg-~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~--dg~lLa 283 (811)
.-..|.+.... .+...+.-+.++.|- .+.+++-. -.+.+|++..+........+....+.+.+| +..+..
T Consensus 339 ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 339 EARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 98888765321 111112222222232 23333322 257888888887777777777777777775 556667
Q ss_pred EEECCCeEEEEEecCC-Cceeeeeccceee
Q 003556 284 CSYNQSCVGVWVVDIS-RIEPYTIGSVTRV 312 (811)
Q Consensus 284 sg~~Dg~V~IWdvd~~-~~~p~~~~~~~~~ 312 (811)
.++.||...|||+--+ .+.-|..++...+
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceee
Confidence 8899999999998654 4555555544333
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-11 Score=139.47 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=145.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
..|.+||.. +.....+..+...+....|+|+|+.|+..+.. ..|.+||+.+++... +..+.....+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468999985 44455566677889999999999998887643 469999998876543 3334445567899999997
Q ss_pred EE-EEECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeE
Q 003556 116 FA-SGSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (811)
Q Consensus 116 La-sgs~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~V~ 189 (811)
|+ +.+.+| .|++||+.++.. ..+..+.......+|+|||++|+.++. +| .|+++|+.+++... +..+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 75 445555 599999988764 345545555678899999999887764 34 47777887765433 222334455
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
..+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 789999999998876443 6999999888765 332 2223456799999999886654
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=3.5e-11 Score=124.66 Aligned_cols=174 Identities=20% Similarity=0.347 Sum_probs=138.0
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcC--CCCCeEEEEEeCCCCE
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTG--HRSNCISVDFHPFGEF 115 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-t~~~v~~l~~--h~~~I~sl~fspdg~~ 115 (811)
.+|.|||-....++.++. ...+|.++.+.++ .|++. ..+.|.||... +.+.++.+.. ......+++-+....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 479999977777887776 5689999999876 34444 37889999987 5555555542 2333444444434445
Q ss_pred EEE-EECCCcEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEEec--CCCCeE
Q 003556 116 FAS-GSLDTNLKIWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT-VKLWDLTAGKLLHDFKC--HEGQIQ 189 (811)
Q Consensus 116 Las-gs~Dg~I~IwDl~~~~~--i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~-I~IwDl~t~~~i~~~~~--h~~~V~ 189 (811)
||. |-.-|.|.|-|+...+. ...+..|...|.|++.+-+|..+|+++..|+ |+|||..+|+.+.+++- ....|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 554 45679999999986655 4778899999999999999999999999997 89999999999999974 345699
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 190 CIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
+++|+|++.+||+++..|+|+||.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999999865
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.5e-11 Score=127.46 Aligned_cols=268 Identities=18% Similarity=0.338 Sum_probs=186.9
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVR 95 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~ 95 (811)
+.|.-+.|..+...+|.....|+.|.+|++...+....+.....++..+.|+|+|+ .|.+...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 46777889887777888889999999999999999999998899999999999996 55566678999999998876543
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECC------------------------------------CcEEEEECCCCeEEEEE
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGSLD------------------------------------TNLKIWDIRKKGCIHTY 139 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs~D------------------------------------g~I~IwDl~~~~~i~~~ 139 (811)
+.-.+..+..++|+|+|++.+.++.- ..+.+||---.-.+..+
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 33345567889999999988877642 12334442211122222
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------------------------------------------
Q 003556 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL------------------------------------------ 177 (811)
Q Consensus 140 ~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~------------------------------------------ 177 (811)
. ..-++..++|+|.+++|++|+.|+.+++.+--+.+.
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 2 235688999999999999999999998865422110
Q ss_pred ------------------EEEEe------cCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCCCCCee
Q 003556 178 ------------------LHDFK------CHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPETSGVR 231 (811)
Q Consensus 178 ------------------i~~~~------~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~l~~~~~~~~~I~ 231 (811)
++.++ .....+.-++|++|..++++-.. -+.+.+||++..++...+ ....+|+
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 01111 01123667899999999988764 357999999987654443 2346799
Q ss_pred EEEEecCCCEEEEEECCCEEEEEecCCce--eeeeeccccceeEeee-cCCCEEEEEECCC
Q 003556 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRC--HDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~--~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg 289 (811)
...|+|....|+.+..+ .++|-|.+.-+ ..+..-++ .+..+.+ .+|..++..+.|.
T Consensus 366 af~WdP~~prL~vctg~-srLY~W~psg~~~V~vP~~GF-~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGK-SRLYFWAPSGPRVVGVPKKGF-NIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcCC-ceEEEEcCCCceEEecCCCCc-eeeeEEecCCCcEEEEEcCCc
Confidence 99999998888877444 46666665433 22222232 3444554 4677777777764
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-11 Score=141.50 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=153.3
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEEC---CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--e
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--T 82 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~---Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~ 82 (811)
.+.+..|...+.+.+|+|++.. |+..+. +..|++||+.+++... +..+.+...+..|+|+|+.|+. .+.+| .
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred ceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 4456677788999999996554 554442 3469999998776543 3334455567899999997754 45555 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
|++||+.+++.. .+..+.......+|+|+|++|+.++. +| .|+++|+.+++.. .+..+.......+|+|||++|+
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEE
Confidence 999999888754 45555555677899999998887764 44 4777787766543 2322334455789999999998
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003556 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCL 233 (811)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~sl 233 (811)
..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|+++|+... ....+..+.+.+...
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p 428 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREP 428 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCC
Confidence 765443 6999999887755 333 22344567999999988877653 46888888643 444554455667777
Q ss_pred EEec
Q 003556 234 TFNP 237 (811)
Q Consensus 234 ~fsp 237 (811)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 8876
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=8.4e-12 Score=142.49 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=149.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCCeEEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASGTIKLW 86 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~D--g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~DG~I~IW 86 (811)
+.+..+...+.+.+|+|++..++++...+ ..|++||+.+++... +....+.+.+..|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 44567788899999999655444444333 459999998876543 3334456678999999998764 5667776666
Q ss_pred E--CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003556 87 D--LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 87 D--l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg~I~Iw--Dl~~~~~i~~~~~h~~~I~si~fspdg~~L~sg 161 (811)
. +..+. ...+..+........|+|+|++|+..+. +|...+| ++.++.. ..+..+........|+|||++|+..
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEE
Confidence 5 44444 4455555555677899999998876654 4555555 4444443 2222223334567899999999877
Q ss_pred ECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003556 162 GEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTF 235 (811)
Q Consensus 162 s~Dg---~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl~f 235 (811)
+.++ .|.+||+.+++...... ........|+|||+.|+.++.++ .+++.++. +.....+..+.+.+...+|
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSW 422 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCcc
Confidence 7654 69999998886543322 23346789999999888877544 46666763 5555555555566777788
Q ss_pred ecC
Q 003556 236 NPD 238 (811)
Q Consensus 236 spd 238 (811)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.8e-11 Score=139.70 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=141.0
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
..|.+||.. +.....+..+...+.+.+|+|+|+.|+..+.. ..|.+||+.+++... +........+..|+|+|+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357777763 55555566678889999999999998877643 469999999887643 3334455678999999998
Q ss_pred EEE-EECCCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCeEEEEEecCCCCeE
Q 003556 116 FAS-GSLDTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLW--DLTAGKLLHDFKCHEGQIQ 189 (811)
Q Consensus 116 Las-gs~Dg~I~Iw--Dl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg~I~Iw--Dl~t~~~i~~~~~h~~~V~ 189 (811)
|+. .+.+|...|| |+..+. ...+..+........|+|||++|+..+. +|...+| ++.++.... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 764 5667765555 555444 4555555555677899999999887664 4555555 545554322 222233345
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
...|+|+|++|+..+.++ .|.+||+.+++....... .......|+|||+.|+.+.++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEec
Confidence 678999999998877654 699999988775433222 234678999999999877654
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3e-11 Score=138.42 Aligned_cols=223 Identities=11% Similarity=0.040 Sum_probs=155.7
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEE--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCCe--
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASGT-- 82 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs--~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~DG~-- 82 (811)
..+.+..|...+.+.+|+|++..++++.. .+..|++||+.+++.. .+..+.+.+....|+|+|+.|+ +.+.+|.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34567788889999999996655444443 2468999999877653 4555667788899999999775 4455554
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
|.+||+.+++.. .+..+........|+|+|++|+..+. +| .|++||+..+.. ..+..+...+....|+|||++|+
T Consensus 272 Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEE
Confidence 778898887654 45556666778999999998887764 33 688899876654 33433455567789999999998
Q ss_pred EEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC------CeEEEEECCCCeEEEEeCCCCCCe
Q 003556 160 SGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD------RTVKFWDLETFELIGSAGPETSGV 230 (811)
Q Consensus 160 sgs~D---g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwDl~~~~~l~~~~~~~~~I 230 (811)
....+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+ ..++++|+..+... .+. ..+.+
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~ 425 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDA 425 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCc
Confidence 77643 3688899865543 3333 23356788999999988776543 36888888766543 333 23345
Q ss_pred eEEEEec
Q 003556 231 RCLTFNP 237 (811)
Q Consensus 231 ~sl~fsp 237 (811)
...+|+|
T Consensus 426 ~~p~Wsp 432 (435)
T PRK05137 426 SDPAWSP 432 (435)
T ss_pred cCcccCC
Confidence 6667776
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.5e-11 Score=127.30 Aligned_cols=275 Identities=12% Similarity=0.223 Sum_probs=189.0
Q ss_pred EEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEcC
Q 003556 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~t~~~v~~l~~ 99 (811)
-++|+| +++++|++..- .+.|-|..+-+..+.+.. -+.|..+.|..+..+++++ ..++.|.+|++...+-...+..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 368999 78889988765 788888776655443332 3567789999888766555 6688999999999999999998
Q ss_pred CCCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--------------
Q 003556 100 HRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-------------- 164 (811)
Q Consensus 100 h~~~I~sl~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D-------------- 164 (811)
...++.+++|+|+|+. |.+..-+-.|.+|.+.+.+.... +-.+..+..++|+|||++.+..+.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8999999999999975 55666788999999988765533 2233456788899988877765431
Q ss_pred ----------------------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---
Q 003556 165 ----------------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--- 219 (811)
Q Consensus 165 ----------------------g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~--- 219 (811)
..+.+||.--.-.+..+. ..-.+..+.|+|.+.+|++|+.|+.+++.+--+.+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 123344422111222222 224578899999999999999999888754221110
Q ss_pred ---------------------------------------------------------EEEeC------CCCCCeeEEEEe
Q 003556 220 ---------------------------------------------------------IGSAG------PETSGVRCLTFN 236 (811)
Q Consensus 220 ---------------------------------------------------------l~~~~------~~~~~I~sl~fs 236 (811)
+...+ .....+--++|+
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 00111 112346678999
Q ss_pred cCCCEEEEEECC---CEEEEEecCCceeeeeeccccceeEeeecCC-CEEEEEECCCeEEEEEecCCCc
Q 003556 237 PDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 237 pdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg-~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
+|..|+++-.++ .+-+||+...+.+.++ ..-+++..+.++.+ ..|+.+.....+++|...+...
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 999999988776 3777777766655443 33445556666544 4666666777899998877443
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.9e-11 Score=124.29 Aligned_cols=149 Identities=17% Similarity=0.360 Sum_probs=110.8
Q ss_pred EEEEEeCCCCEEEEEEC----------CCcEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 003556 105 ISVDFHPFGEFFASGSL----------DTNLKIWDIRK-KGCIHTYKG-HTRGVNAIRFTPDGRWVVSG--GEDNTVKLW 170 (811)
Q Consensus 105 ~sl~fspdg~~Lasgs~----------Dg~I~IwDl~~-~~~i~~~~~-h~~~I~si~fspdg~~L~sg--s~Dg~I~Iw 170 (811)
..+.|++.|++|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999997665433 23445555532 233444432 34579999999999987654 356799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE-
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL- 246 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs- 246 (811)
|++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||+++.+.+..... ..++.++|+|||++|+++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 997 66666664 567889999999999999875 46799999999998877654 3478999999999999774
Q ss_pred ------CCCEEEEEecCC
Q 003556 247 ------HESLKVFSWEPI 258 (811)
Q Consensus 247 ------~d~I~Vwd~~~~ 258 (811)
+++++||++...
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 457999998643
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.8e-11 Score=123.09 Aligned_cols=155 Identities=23% Similarity=0.441 Sum_probs=115.7
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEcC-CCCCeEEEEEeCCCCEEEEE--ECCCcEEEE
Q 003556 63 DSVSFDSSEVLVAAGAA----------SGTIKLWDLEE-AKIVRTLTG-HRSNCISVDFHPFGEFFASG--SLDTNLKIW 128 (811)
Q Consensus 63 ~~l~fspdg~~Lasgs~----------DG~I~IWDl~t-~~~v~~l~~-h~~~I~sl~fspdg~~Lasg--s~Dg~I~Iw 128 (811)
..+.|+++|.+|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788999987765433 23455666532 233444432 34579999999999987654 456799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003556 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (811)
Q Consensus 129 Dl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~ 205 (811)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 4677899999999999998754 679999999998888776 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCCeEEEEe
Q 003556 206 ------DRTVKFWDLETFELIGSA 223 (811)
Q Consensus 206 ------Dg~I~IwDl~~~~~l~~~ 223 (811)
|+.++||+.. |+++...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7789999986 5555543
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=3.3e-09 Score=117.82 Aligned_cols=273 Identities=15% Similarity=0.247 Sum_probs=178.5
Q ss_pred EEEEECC----CeEEEEEC--CCCceE--EEecCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--e--EEE
Q 003556 32 LVTGGED----HKVNLWAI--GKPNAI--LSLSGHTSGIDSVSFDSSEVLVAAGAA----SGTIKLWDLEEA--K--IVR 95 (811)
Q Consensus 32 Latgs~D----g~I~VWdl--~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~----DG~I~IWDl~t~--~--~v~ 95 (811)
+++|+.. +.|++|++ .+++.. ..+. .......+++++++++|++... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3455554 68999988 333322 2221 3345567899999999999877 579999998764 3 334
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCC-eEEEE---Ee----------cCCCCeEEEEEcCCCCEEEE
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKK-GCIHT---YK----------GHTRGVNAIRFTPDGRWVVS 160 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~-~~i~~---~~----------~h~~~I~si~fspdg~~L~s 160 (811)
...........++++|++++|+++.. +|.|.+|++... ..... +. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 44434455678999999999888875 899999999873 32222 21 12345789999999999888
Q ss_pred EEC-CCeEEEEECCCCe--EE--EEEe-cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC--CCe--EEEEeCC----
Q 003556 161 GGE-DNTVKLWDLTAGK--LL--HDFK-CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE--TFE--LIGSAGP---- 225 (811)
Q Consensus 161 gs~-Dg~I~IwDl~t~~--~i--~~~~-~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~--~~~--~l~~~~~---- 225 (811)
... ...|.+|++.... +. ..+. ........+.|+|+++++++.. .++.|.+|++. ++. .+..+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 754 3479999987654 32 2232 2345678999999999887766 47789999988 443 2332221
Q ss_pred C--CCCeeEEEEecCCCEEEEEECC--CEEEEEecCC----ceeeeeeccccceeEee-ecCCCEEEEEE-CCCeEEEEE
Q 003556 226 E--TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI----RCHDAVDVGWSRLSDLN-VHEGKLLGCSY-NQSCVGVWV 295 (811)
Q Consensus 226 ~--~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~----~~~~~~~~~~~~i~~l~-~~dg~lLasg~-~Dg~V~IWd 295 (811)
. ......|.++|||++|+++..+ .|.+|+++.. +....+......-..+. .++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1 1257889999999999988654 6999999543 22333444333223444 47899888776 567999998
Q ss_pred ec--CCCceeee
Q 003556 296 VD--ISRIEPYT 305 (811)
Q Consensus 296 vd--~~~~~p~~ 305 (811)
++ ++.+.+..
T Consensus 321 ~d~~tG~l~~~~ 332 (345)
T PF10282_consen 321 IDPDTGKLTPVG 332 (345)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCcEEEec
Confidence 86 55555443
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.1e-11 Score=126.60 Aligned_cols=193 Identities=16% Similarity=0.322 Sum_probs=149.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC----
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK---- 133 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~---- 133 (811)
..+..++|++.-.-++++..|-.|++||-.. +....++ .....|.|++|-|.+. .|++|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999777788999999999999776 4444444 2456899999999654 688888766 999976421
Q ss_pred e----------EEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003556 134 G----------CIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 134 ~----------~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Las 202 (811)
. .+....+| .+|++++|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1 12233445 67999999999999998875 567999999999877666445678899999999999999
Q ss_pred EECCCeEEEEEC-CCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 203 GSADRTVKFWDL-ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 203 gs~Dg~I~IwDl-~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
++-|+..++|.. ++.....-..+ .+.|...+|+|+|++|.....+.-.+|.+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 999999999954 44444333333 458999999999999998877776777764
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.9e-11 Score=127.26 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=182.3
Q ss_pred CCEEEEEEeeCCCcEEEEEE-CCCeEEEEECCCCceEEEe------cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 17 STVNCLKIGRKSSRVLVTGG-EDHKVNLWAIGKPNAILSL------SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs-~Dg~I~VWdl~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
..|..++|.-++..-+..+. .|..+..+.+....+...+ ...+.+|..++.. ++ .|++|-.+|.+.+|..+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence 46777788765444444443 5666776666655544432 2345566666643 33 56677889999999988
Q ss_pred CCe----EEEEEcCCCCCeEEEEEeCCCC-EEEEEECC--CcEEEEECCCCeEEEEEecCC---------CCeEEEEEcC
Q 003556 90 EAK----IVRTLTGHRSNCISVDFHPFGE-FFASGSLD--TNLKIWDIRKKGCIHTYKGHT---------RGVNAIRFTP 153 (811)
Q Consensus 90 t~~----~v~~l~~h~~~I~sl~fspdg~-~Lasgs~D--g~I~IwDl~~~~~i~~~~~h~---------~~I~si~fsp 153 (811)
.+. .+..+..+ ..+..+.-++... .+++|+.. ..+.+||+++.+.++.-+.-. -.++++.|.+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 443 23333323 4566666676555 45568888 889999999887776654322 2467889998
Q ss_pred C--CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCCC
Q 003556 154 D--GRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSG 229 (811)
Q Consensus 154 d--g~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~-~~~~~~~ 229 (811)
. ...|++++.-+.+++||.+.+ +++..|.....+++++...|.|+++++|..-|.+..||++.++.+.. +.+..+.
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 7 889999999999999999865 57888888889999999999999999999999999999999998877 8888999
Q ss_pred eeEEEEecCCCEEEEEECC-CEEEEEecCCcee
Q 003556 230 VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (811)
Q Consensus 230 I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (811)
|+++..+|.+++|++++-| .++|||.++.+.+
T Consensus 293 irsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 293 IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999999999976555 7999999885543
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=4.3e-10 Score=125.44 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=179.4
Q ss_pred cEE-EEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003556 30 RVL-VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (811)
Q Consensus 30 ~lL-atgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~ 108 (811)
+++ ++-..+|.|.|.|..+.+.+..+......-..+.|++|++++++++.||.|.++|+.+.+.+.++... ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 444 45567899999999999999999865554456789999999999999999999999999999999853 4567899
Q ss_pred EeCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecC-------CCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEE
Q 003556 109 FHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGH-------TRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLH 179 (811)
Q Consensus 109 fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~~~~h-------~~~I~si~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~ 179 (811)
++++|++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....++.. -+.+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988775 5899999999999998887642 3457788888888855544 455889888987654332
Q ss_pred -EEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeC----CCCCCeeEEEEecC----------CCEE-
Q 003556 180 -DFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAG----PETSGVRCLTFNPD----------GRTL- 242 (811)
Q Consensus 180 -~~~~h~~~V~sv~fspdg~~Lasg-s~Dg~I~IwDl~~~~~l~~~~----~~~~~I~sl~fspd----------g~~L- 242 (811)
.............|+|++++++.+ ..++.|-++|.++++.+..+. .|..++..+ .+|. +...
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceec
Confidence 222245667889999999987665 457799999999998877653 222333322 1222 2222
Q ss_pred EEEECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEE----ECCCeEEEEEecCCCce
Q 003556 243 LCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCS----YNQSCVGVWVVDISRIE 302 (811)
Q Consensus 243 asgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg----~~Dg~V~IWdvd~~~~~ 302 (811)
..-+.+.+.+|+....+....+......+.....++++++.+. ...+.|.++|.++-++.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCccee
Confidence 2223444556666666777777776666555556889998887 34588999999887543
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=5.4e-12 Score=136.59 Aligned_cols=284 Identities=19% Similarity=0.278 Sum_probs=206.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-cCCCCCeEEEEEeCCC--CEEEEEECCCcEEEE
Q 003556 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128 (811)
Q Consensus 52 ~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l-~~h~~~I~sl~fspdg--~~Lasgs~Dg~I~Iw 128 (811)
...|..|.+.|..|.|+..|..|++|+.|..|.+||+..++....+ .+|...|..-.|.|.. ..+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3456789999999999999999999999999999999988877666 4798899888898854 479999999999987
Q ss_pred ECCC-CeE--EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEec---CCC---CeEEEEEeCCC-
Q 003556 129 DIRK-KGC--IHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEG---QIQCIDFHPHE- 197 (811)
Q Consensus 129 Dl~~-~~~--i~~~~~h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~---~V~sv~fspdg- 197 (811)
.+.. +.+ ...+..|.++|.-++.-|+. .-|++++.|+.+.-+|++.+.....+.+ +.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7653 322 33455699999999999954 5688999999999999998765444432 222 46788888854
Q ss_pred CEEEEEECCCeEEEEECCCCeE------EEEeCC------CCCCeeEEEEecCCCEEEEE-ECCCEEEEEecCCce----
Q 003556 198 FLLATGSADRTVKFWDLETFEL------IGSAGP------ETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC---- 260 (811)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~~~~~------l~~~~~------~~~~I~sl~fspdg~~Lasg-s~d~I~Vwd~~~~~~---- 260 (811)
..+++|+.|-.+++||.+.... +..+.+ ....|++++|+.++.-|.++ .+..|.+|.-.-...
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 4899999999999999875332 222222 24568999999776665555 444677774322211
Q ss_pred ---------eeeeeccc--cceeEeee--cCCCEEEEEECCCeEEEEEecCCCceeeeeccceeeccccccccCCCCCcc
Q 003556 261 ---------HDAVDVGW--SRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLS 327 (811)
Q Consensus 261 ---------~~~~~~~~--~~i~~l~~--~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~ 327 (811)
..++..+. ..+..+.+ +...++.+|+.-|.|-||+-.++++..|+.+... +..+-+.+|..+-...
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhc
Confidence 01122221 12444444 6689999999999999999999999999998887 4445555555554444
Q ss_pred ccccCcccc
Q 003556 328 VLNENSAKA 336 (811)
Q Consensus 328 ~~~~~~~~~ 336 (811)
.+-++++|.
T Consensus 454 SGid~DVKI 462 (559)
T KOG1334|consen 454 SGIDHDVKI 462 (559)
T ss_pred cCCccceee
Confidence 444555554
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=3.2e-10 Score=128.89 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=145.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~ 115 (811)
..|.++|.. +.....+..+...+....|+|+|++|+.+... ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 358888875 33345555677788999999999999887654 4799999998865433 335556677999999997
Q ss_pred EEEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeE
Q 003556 116 FASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (811)
Q Consensus 116 Lasg-s~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~V~ 189 (811)
|+.. +.++ .|++||+.++... .+..+........|+|||++|+..+.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4444 5999999877543 344454555677999999998876653 3 6888898877643 3433455677
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
.+.|+|+|.+|+.++.++ .|.+||+.++...... .. .......|+|||++|+....+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeC
Confidence 889999999999988776 8999999876543222 21 223556899999988876554
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.5e-10 Score=118.76 Aligned_cols=286 Identities=20% Similarity=0.267 Sum_probs=194.3
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEE------------CCCeEEEEECCCCceEE--Ee-cCCCCCeEEEEEcC---CCC
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGG------------EDHKVNLWAIGKPNAIL--SL-SGHTSGIDSVSFDS---SEV 72 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs------------~Dg~I~VWdl~t~~~~~--~l-~~h~~~V~~l~fsp---dg~ 72 (811)
.|.+-.-++.|++-.+ ++|++|+ .-|++.+|++...+... .+ ...++.+..+.|.- +|.
T Consensus 9 ~l~~~~~~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~ 85 (339)
T KOG0280|consen 9 ELEADPVPICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD 85 (339)
T ss_pred eeccCCCCcccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCcc
Confidence 3444455666666554 2777774 34789999986554332 11 12346677888853 444
Q ss_pred -EEEEEECCCeEEEEECCCCeEEEEEcCCCC------CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE--EEEEecCC
Q 003556 73 -LVAAGAASGTIKLWDLEEAKIVRTLTGHRS------NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC--IHTYKGHT 143 (811)
Q Consensus 73 -~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~------~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~--i~~~~~h~ 143 (811)
.++-+...|.|.++..........+.+-.. ...++.|++.+..++++..+|.+.+-+...... ++.++.|.
T Consensus 86 ~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He 165 (339)
T KOG0280|consen 86 FNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE 165 (339)
T ss_pred ceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc
Confidence 566667789999998776555555543221 356788999999999999999999666554443 44788999
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCeEEEE-EecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCC-Ce
Q 003556 144 RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT-AGKLLHD-FKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET-FE 218 (811)
Q Consensus 144 ~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~-t~~~i~~-~~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~-~~ 218 (811)
.+++...|+. +.+.+++|++||.+..||++ .++.+.. .+.|...|.++.-+| .+.++++|+.|..|++||+++ ++
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 9999999986 45688999999999999999 4444444 456888899998877 578999999999999999994 66
Q ss_pred EEEEeCCCCCCeeEEEEecC--CCEEEEEECCCEEEEEecCCcee-----eeeeccccceeEeee-cCCCEEE-EEECCC
Q 003556 219 LIGSAGPETSGVRCLTFNPD--GRTLLCGLHESLKVFSWEPIRCH-----DAVDVGWSRLSDLNV-HEGKLLG-CSYNQS 289 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspd--g~~Lasgs~d~I~Vwd~~~~~~~-----~~~~~~~~~i~~l~~-~dg~lLa-sg~~Dg 289 (811)
++.... ..++|+.+.++|. +..|+++..++.+|.+....... .....+.+..+.-.+ +...+|+ |++.|.
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccc
Confidence 665543 3488999999995 45677788888888887654322 111222222211111 1112344 567888
Q ss_pred eEE-EEEecCCC
Q 003556 290 CVG-VWVVDISR 300 (811)
Q Consensus 290 ~V~-IWdvd~~~ 300 (811)
.++ +|-.-++.
T Consensus 325 ~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 325 KIRQLWLHITGE 336 (339)
T ss_pred ceeeeeeeccCC
Confidence 855 88655543
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.2e-10 Score=128.76 Aligned_cols=224 Identities=11% Similarity=0.061 Sum_probs=149.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--eE
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--TI 83 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~D--g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~I 83 (811)
.+.+..|...+...+|+|++..++++...+ ..|++|++.+++... +....+.+....|+|+|+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 455667778899999999665555555443 369999998776543 3333445567899999998774 44444 68
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-C--CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003556 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-D--g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~s 160 (811)
.+||+.+++... +..+........|+|+|+.|+..+. + ..|++||+.+++... +...........|+|+|++|+.
T Consensus 270 y~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence 888998876543 4445555667899999998777664 3 368888888776433 2212223446789999999987
Q ss_pred EECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003556 161 GGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 161 gs~D-g--~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~sl~ 234 (811)
...+ + .|.+||+.+++... +.. ........|+|+|++++..+.+ ..|+++++... ....+..+.+.+...+
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ 424 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPS 424 (430)
T ss_pred EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCc
Confidence 7653 3 58899998876533 322 2222356899999988877654 35777887543 3334444445566777
Q ss_pred EecC
Q 003556 235 FNPD 238 (811)
Q Consensus 235 fspd 238 (811)
|+|-
T Consensus 425 ws~~ 428 (430)
T PRK00178 425 WSPY 428 (430)
T ss_pred cCCC
Confidence 7763
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=9e-09 Score=114.31 Aligned_cols=243 Identities=21% Similarity=0.343 Sum_probs=165.1
Q ss_pred CCCCEEEEEEeeCCCcEEEEEEC----CCeEEEEECCCC--c--eEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGE----DHKVNLWAIGKP--N--AILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~----Dg~I~VWdl~t~--~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (811)
-......++++| ++++|++..+ +|.|..|++... + .+............+++++++++|+++.. +|.|.+
T Consensus 35 ~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 445667788998 4556666655 579999998654 2 33333323456678999999999998874 899999
Q ss_pred EECCC-CeEEEE---Ec----------CCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCe--E--EEEEe-cCCCC
Q 003556 86 WDLEE-AKIVRT---LT----------GHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKG--C--IHTYK-GHTRG 145 (811)
Q Consensus 86 WDl~t-~~~v~~---l~----------~h~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~--~--i~~~~-~h~~~ 145 (811)
+++.. +..... +. .......++.|+|+|+++++... ...|++|++.... . ...+. .....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 99986 443322 21 12345788999999998887654 3479999987654 2 12222 34466
Q ss_pred eEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeE--EEEEecC------CCCeEEEEEeCCCCEEEEEE-CCCeEEEEE
Q 003556 146 VNAIRFTPDGRWVVSGGE-DNTVKLWDLT--AGKL--LHDFKCH------EGQIQCIDFHPHEFLLATGS-ADRTVKFWD 213 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~-Dg~I~IwDl~--t~~~--i~~~~~h------~~~V~sv~fspdg~~Lasgs-~Dg~I~IwD 213 (811)
-+.+.|+|+++++++..+ ++.|.+|++. .+.. +..+... ......+.++|+|++|+++. ..+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 889999999998877664 6789999888 4432 2222211 12578899999999888776 467899999
Q ss_pred CC--CC--eEEEEeCCCCCCeeEEEEecCCCEEEEEECC--CEEEEEecCC
Q 003556 214 LE--TF--ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI 258 (811)
Q Consensus 214 l~--~~--~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~ 258 (811)
+. ++ +.+..+.......+.++|+|+|++|+++..+ .|.+|+++..
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 93 23 3344444445558999999999999998765 5999988643
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1e-09 Score=125.49 Aligned_cols=203 Identities=13% Similarity=0.049 Sum_probs=140.6
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003556 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~L 116 (811)
.|.++|.+.+ ....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 4777787644 345555677889999999999988876643 469999998886543 33334445578999999987
Q ss_pred EE-EECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeEE
Q 003556 117 AS-GSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (811)
Q Consensus 117 as-gs~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~V~s 190 (811)
+. .+.+| .|++||+.++... .+..+........|+|||+.|+..+. +| .|+++|+.+++.... .........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccc
Confidence 74 44444 6889999887643 44445555667899999998877664 33 588888887764332 222233446
Q ss_pred EEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 191 v~fspdg~~Lasgs~D-g--~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
..|+|+|++|+..+.+ + .|.+||+.+++....... .......|+|||+.|+.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec
Confidence 7899999999887653 2 588999988765332222 222356899999999876543
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.1e-10 Score=123.92 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=159.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcC---CCCCeEEEEEe------C--------------CCCEEEEEECCCcE
Q 003556 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG---HRSNCISVDFH------P--------------FGEFFASGSLDTNL 125 (811)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~---h~~~I~sl~fs------p--------------dg~~Lasgs~Dg~I 125 (811)
+...|+|....||.+++||...++....+.. -.+.+.+..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777753 23445555553 1 23367888899999
Q ss_pred EEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003556 126 KIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (811)
Q Consensus 126 ~IwDl~~~~~i~~~~--~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg 203 (811)
.+|++..++...++. .|.+.|.++.++.+-..|.+++.|+.+..|+......+..+++....+.+++.+|||..|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999888876 588999999999998999999999999999999999999999988899999999999999998
Q ss_pred ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecC-----CCEEEEEE--CCCEEEEEecC
Q 003556 204 SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-----GRTLLCGL--HESLKVFSWEP 257 (811)
Q Consensus 204 s~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspd-----g~~Lasgs--~d~I~Vwd~~~ 257 (811)
+ +.|++||+++++.+..+.+|.++|++++|..+ |.++.++. +..+.+|-.+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 68999999999999999999999999999887 78887653 34688887765
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=6.9e-10 Score=126.16 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=148.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEECC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC--e
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG--T 82 (811)
Q Consensus 9 i~~~~~H~~~V~~lafsp~~~~lLatgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~DG--~ 82 (811)
.+.+..+...+...+|+|++. .|+.+..+ ..|++||+.+++... +..+...+.+++|+|+++.|+.. +.++ .
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 455666777899999999554 45554432 479999998775543 33455667789999999877644 4444 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
|++||+.+++... +..+........|+|+|++|+..+.. + .|++||+.+++.. .+..+...+....|+|+|++|+
T Consensus 260 i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 260 IYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEE
Confidence 8999998776543 34454555577899999988776643 3 6888898876643 4444556677889999999999
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEE
Q 003556 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCL 233 (811)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl 233 (811)
.++.++ .|.+||+.++.... +.. ........|+|+|.+|+..+.++ .+++++.. +.....+....+.+..+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP 414 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence 888776 79999998765432 222 22345568999999888877654 45666644 44444444334444444
Q ss_pred EE
Q 003556 234 TF 235 (811)
Q Consensus 234 ~f 235 (811)
+|
T Consensus 415 ~w 416 (417)
T TIGR02800 415 AW 416 (417)
T ss_pred CC
Confidence 44
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.5e-09 Score=123.92 Aligned_cols=225 Identities=15% Similarity=0.084 Sum_probs=146.3
Q ss_pred EecCCCCEEEEEEeeCCCc--EEEEEECCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CC----e
Q 003556 12 FVAHSSTVNCLKIGRKSSR--VLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SG----T 82 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~--lLatgs~Dg--~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-DG----~ 82 (811)
+..+...+..-+|+|++.. ++++...+| .|++.++..++... +....+......|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 4445556677899997655 344555554 57777887665433 2324445567899999998887653 22 3
Q ss_pred EEEEECCC---CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCc--EEEEECCC-CeEEEEEecCCCCeEEEEEcCCC
Q 003556 83 IKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTN--LKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG 155 (811)
Q Consensus 83 I~IWDl~t---~~~v~~l~~h~~~I~sl~fspdg~~Lasgs-~Dg~--I~IwDl~~-~~~i~~~~~h~~~I~si~fspdg 155 (811)
+.+|++.. ++.......+.......+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+....|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 44477765 233333333334456789999999888766 4564 55555542 23344454455567789999999
Q ss_pred CEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEeCCCCCC
Q 003556 156 RWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSG 229 (811)
Q Consensus 156 ~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~~~~l~~~~~~~~~ 229 (811)
++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.... ...|++||+..++...... ..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCc
Confidence 999876543 369999999887654332 3345678999999998876543 3579999998876544433 3345
Q ss_pred eeEEEEecCC
Q 003556 230 VRCLTFNPDG 239 (811)
Q Consensus 230 I~sl~fspdg 239 (811)
+...+|+|-.
T Consensus 417 ~~~p~Ws~~~ 426 (428)
T PRK01029 417 KRFPSWGAFP 426 (428)
T ss_pred ccCceecCCC
Confidence 6777888753
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2e-09 Score=119.01 Aligned_cols=276 Identities=13% Similarity=0.208 Sum_probs=180.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-----EC-----CCeEEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-----AA-----SGTIKL 85 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-----s~-----DG~I~I 85 (811)
..+++..++++ ++++++.+ .+..+.|++......+.+...- .+.++.|+|.+.+|.+- .. .-.+.+
T Consensus 34 ~~~~~v~~~S~-~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSN-NGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcC-CCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34567778887 77766555 5678999999887655554432 88999999999988762 11 235779
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEE---
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR--WVVS--- 160 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~--~L~s--- 160 (811)
|+++++.....+..-...-++..|+.|..+.+-- ..+.+++|++...+.+.. +-|...|+.+.++|.+. ++++
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEcc
Confidence 9999866555554333333577888766543322 345688887765332211 11344455555555311 1111
Q ss_pred --EECCCeEEEE---------------------------------------------------------ECCCCeEEEEE
Q 003556 161 --GGEDNTVKLW---------------------------------------------------------DLTAGKLLHDF 181 (811)
Q Consensus 161 --gs~Dg~I~Iw---------------------------------------------------------Dl~t~~~i~~~ 181 (811)
.|.-+.|+|| ++....+...+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 1122234444 33322222222
Q ss_pred ecCCCCeEEEEEeCCCCEEEE--EECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC----CEEEEEe
Q 003556 182 KCHEGQIQCIDFHPHEFLLAT--GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSW 255 (811)
Q Consensus 182 ~~h~~~V~sv~fspdg~~Las--gs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~ 255 (811)
. ..++|.++.|+|+++-+++ |-.-..+.|||++ +.++..+. .++-+++-|+|.|++|+.++-+ .+.|||.
T Consensus 268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 2 3689999999999965554 5566789999987 56665553 4667899999999999865544 4999999
Q ss_pred cCCceeeeeeccccceeEeeecCCCEEEEEEC------CCeEEEEEecCCCce
Q 003556 256 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN------QSCVGVWVVDISRIE 302 (811)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~------Dg~V~IWdvd~~~~~ 302 (811)
...+++..+...+..+..+. +||+++.++.. |+.++||+..+..+.
T Consensus 344 ~n~K~i~~~~a~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 344 PNRKLIAKFKAANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cchhhccccccCCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 99988888888777554433 88998887764 789999999987655
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.8e-10 Score=126.17 Aligned_cols=220 Identities=11% Similarity=0.100 Sum_probs=143.7
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCCe--EEEE
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASGT--IKLW 86 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg--~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~DG~--I~IW 86 (811)
+..+...+.+..|+|++..++++...++ .|++||+.+++... +...........|+|||+.|+. .+.+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 3344556788999996666555554444 58888988776532 2222334457899999997765 455664 8888
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003556 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~ 163 (811)
|+.+++.. .+..+.......+|+|+|++|+..+. ++ .|+++|+.+++... +..........+|+|||++|+..+.
T Consensus 292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 98877654 34445556678899999998877654 33 57777887776433 2222223345789999999887655
Q ss_pred C-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEec
Q 003556 164 D-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 164 D-g--~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D-g--~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (811)
+ + .|.++|+.+++... +... .......|+|+|..|+..+.+ + .+++++.. +.....+....+.+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 46678888876533 2221 122345799999988776643 3 47778874 555555655556677778876
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=4.5e-09 Score=119.96 Aligned_cols=219 Identities=15% Similarity=0.067 Sum_probs=138.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE--E-EEEECC--CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL--V-AAGAAS--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~D--G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg 113 (811)
..|.+.|.+.++. ..+......+..-.|+|||+. + ++...+ ..|.+.++..++..+.. ...+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 3677777754443 345445566778899999974 2 244344 35888888877644333 244445578999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCe--EEEEECCC-CeEEEEE
Q 003556 114 EFFASGSL-DT----NLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNT--VKLWDLTA-GKLLHDF 181 (811)
Q Consensus 114 ~~Lasgs~-Dg----~I~IwDl~~~---~~i~~~~~h~~~I~si~fspdg~~L~sgs-~Dg~--I~IwDl~t-~~~i~~~ 181 (811)
+.|+..+. +| .+.+|++..+ ........+.......+|+|||++|+..+ .+|. |.++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887653 22 3444777652 32333322233446789999999888766 4564 44555542 2334444
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC----CEEEEE
Q 003556 182 KCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFS 254 (811)
Q Consensus 182 ~~h~~~V~sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd 254 (811)
..+...+....|+|||++|+..+.+ ..|++||+.+++...... ....+....|+|||+.|+..... .+.+++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 4445567788999999988877643 479999999887654332 23456789999999988854332 255566
Q ss_pred ecCCce
Q 003556 255 WEPIRC 260 (811)
Q Consensus 255 ~~~~~~ 260 (811)
++..+.
T Consensus 402 l~~g~~ 407 (428)
T PRK01029 402 LITKKT 407 (428)
T ss_pred CCCCCE
Confidence 555443
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.1e-09 Score=120.27 Aligned_cols=202 Identities=16% Similarity=0.087 Sum_probs=135.6
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003556 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~L 116 (811)
.|.++|....+. ..+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++.... ...........|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778654433 4455567788999999999988876543 3689999988765332 2223334578999999977
Q ss_pred EE-EECCCc--EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeEE
Q 003556 117 AS-GSLDTN--LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (811)
Q Consensus 117 as-gs~Dg~--I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~V~s 190 (811)
+. .+.+|. |++||+.+++. ..+..+........|+|||++|+..+. ++ .|+++|+.+++.... .........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 65 455664 88889887764 344445555678899999998877654 33 577788887765432 222223345
Q ss_pred EEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 191 v~fspdg~~Lasgs~D-g--~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
..|+|+|++|+..+.+ + .|.++|+.+++....... .......|+|||+.|+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEe
Confidence 7899999988877653 3 566788888765332221 12234579999999886544
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=134.70 Aligned_cols=196 Identities=22% Similarity=0.352 Sum_probs=157.9
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCC----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS----GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~----~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (811)
+.|....+.. ....++.+..+..+.+||...+..+..+..... ...-+.++++.-++++|+.-+.|.+|+....+
T Consensus 88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3444444444 345678888888999999877766665553221 11223346778899999999999999987444
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 93 ~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
.-..+.+|.+.|.++.|+-+|.++++.|.|..+++|++.+.+... ..-+|...+..++|.|. .+++++.|.++++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 444688999999999999999999999999999999999988766 66689999999999988 899999999999997
Q ss_pred CCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 172 LTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 172 l~t~~~i~~~~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
.. ++.+..+..|. ..|+.++..++...+++++.|+.+++||+..
T Consensus 245 ~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 65 55555777765 4699999999999999999999999999764
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.9e-09 Score=118.57 Aligned_cols=188 Identities=15% Similarity=0.270 Sum_probs=157.5
Q ss_pred CCCcEEEEEECCCeEEEEECCCCceEEEecC---CCCCeEEEEEc--------------------CCCCEEEEEECCCeE
Q 003556 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG---HTSGIDSVSFD--------------------SSEVLVAAGAASGTI 83 (811)
Q Consensus 27 ~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~---h~~~V~~l~fs--------------------pdg~~Lasgs~DG~I 83 (811)
....++|....||.+++|+..+++....+.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3667899999999999999988887776653 23444555552 133468888999999
Q ss_pred EEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003556 84 KLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sg 161 (811)
.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...+..+..++.....+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999988886 599999999999888899999999999999999999999999988899999999999999988
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-----CCEEEE-EECCCeEEEEECCC
Q 003556 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-----EFLLAT-GSADRTVKFWDLET 216 (811)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspd-----g~~Las-gs~Dg~I~IwDl~~ 216 (811)
+ +.|++||+.+++.+..|.+|.++|.++.|.-+ |.++++ ...+..+.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 68999999999999999999999999999887 555554 44556677776543
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=9.8e-10 Score=114.84 Aligned_cols=244 Identities=20% Similarity=0.314 Sum_probs=172.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEeCCCC--EEEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHR------------SNCISVDFHPFGE--FFASG 119 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~------------~~I~sl~fspdg~--~Lasg 119 (811)
..-|.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999754322 333444443 3577899998775 57777
Q ss_pred ECCCcEEEEECCCCeE-----------------------------------EEEE-ecCCCCeEEEEEcCCCCEEEEEEC
Q 003556 120 SLDTNLKIWDIRKKGC-----------------------------------IHTY-KGHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 120 s~Dg~I~IwDl~~~~~-----------------------------------i~~~-~~h~~~I~si~fspdg~~L~sgs~ 163 (811)
+.|.+|++|-+..... .+.+ ..|...|.+|.+..|+..++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8999999998753211 0111 2577889999999999988887 6
Q ss_pred CCeEEEEECCCCeE---EEEEecCC-----CCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEE------E------
Q 003556 164 DNTVKLWDLTAGKL---LHDFKCHE-----GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIG------S------ 222 (811)
Q Consensus 164 Dg~I~IwDl~t~~~---i~~~~~h~-----~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~l~------~------ 222 (811)
|=.|.+|++.-... +..++.+. .-|++..|||. -.+++-.+..|+|++.|++...+.. .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 88999999874322 33333332 34899999996 4677778889999999998432211 1
Q ss_pred ----eCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecC-Cceeeee----------------eccccceeEeeecCCCE
Q 003556 223 ----AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP-IRCHDAV----------------DVGWSRLSDLNVHEGKL 281 (811)
Q Consensus 223 ----~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~-~~~~~~~----------------~~~~~~i~~l~~~dg~l 281 (811)
+..--..|..+.|+++|+|+++-..-++++||+.. .+....+ +.-+....+....++..
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 11112457889999999999998888999999853 2222222 22233444444467789
Q ss_pred EEEEECCCeEEEEEecCCCcee
Q 003556 282 LGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 282 Lasg~~Dg~V~IWdvd~~~~~p 303 (811)
+.+|+....+++++++-+....
T Consensus 344 v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred EecccccceEEEecCCCCccee
Confidence 9999999999999966655553
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-09 Score=114.33 Aligned_cols=242 Identities=18% Similarity=0.264 Sum_probs=170.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc-----eEEEecCCC------------CCeEEEEEcCCCC--EEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHT------------SGIDSVSFDSSEV--LVA 75 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~-----~~~~l~~h~------------~~V~~l~fspdg~--~La 75 (811)
..+-|.++.|.. .|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345789999998 77899999999999999753322 223344443 4588899987665 566
Q ss_pred EEECCCeEEEEECCCCeE-----------------------------------EEEE-cCCCCCeEEEEEeCCCCEEEEE
Q 003556 76 AGAASGTIKLWDLEEAKI-----------------------------------VRTL-TGHRSNCISVDFHPFGEFFASG 119 (811)
Q Consensus 76 sgs~DG~I~IWDl~t~~~-----------------------------------v~~l-~~h~~~I~sl~fspdg~~Lasg 119 (811)
..+.|.+|++|.+..... .+.+ .+|.-.|.++.++.|++.++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 778899999998743211 1111 2577789999999999999888
Q ss_pred ECCCcEEEEECCCCe---EEEEEecCC-----CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEE----EEe----
Q 003556 120 SLDTNLKIWDIRKKG---CIHTYKGHT-----RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLH----DFK---- 182 (811)
Q Consensus 120 s~Dg~I~IwDl~~~~---~i~~~~~h~-----~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~----~~~---- 182 (811)
. |=.|.+|+++--. .+..++.+. .-|++..|+| ..++|+..+..|.|++.|++...+.- .|.
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4 6779999986332 223333332 3488899999 45788888999999999999542211 111
Q ss_pred --------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC-CCCeEEEEeCCC------------CCCe---eEEEEecC
Q 003556 183 --------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDL-ETFELIGSAGPE------------TSGV---RCLTFNPD 238 (811)
Q Consensus 183 --------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl-~~~~~l~~~~~~------------~~~I---~sl~fspd 238 (811)
.--..|..+.|+++|+++++-.. -+|++||+ ...+++..+..| ...| ..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999998754 58999999 445566555444 2223 45789999
Q ss_pred CCEEEEEECC-CEEEEEecCCc
Q 003556 239 GRTLLCGLHE-SLKVFSWEPIR 259 (811)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~ 259 (811)
+.++++|+.+ -.++|+...+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 9999999876 48888865543
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.7e-08 Score=103.21 Aligned_cols=260 Identities=19% Similarity=0.290 Sum_probs=174.1
Q ss_pred CCeEEEEECCCCce---EEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC--CeEE--EEEcCCCCCeEEE
Q 003556 38 DHKVNLWAIGKPNA---ILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEE--AKIV--RTLTGHRSNCISV 107 (811)
Q Consensus 38 Dg~I~VWdl~t~~~---~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t--~~~v--~~l~~h~~~I~sl 107 (811)
+.-|++|++.+..- ...+-.+.+..+-|+|+++++.|+++..+ |.|..|.++. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999963321 12233466788999999999998888654 6777777764 5432 2222223344789
Q ss_pred EEeCCCCEEEEEEC-CCcEEEEECCCCeE----EEEEecCCCC----------eEEEEEcCCCCEEEEEECC-CeEEEEE
Q 003556 108 DFHPFGEFFASGSL-DTNLKIWDIRKKGC----IHTYKGHTRG----------VNAIRFTPDGRWVVSGGED-NTVKLWD 171 (811)
Q Consensus 108 ~fspdg~~Lasgs~-Dg~I~IwDl~~~~~----i~~~~~h~~~----------I~si~fspdg~~L~sgs~D-g~I~IwD 171 (811)
+++++|++++++.. .|.|.++-++.... +..+ .|.+. +....|.|++++|++.... -.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999888875 57899999876322 2222 24444 8899999999999887643 4689999
Q ss_pred CCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCC----eEEEEeC------CCCCCeeEEEEec
Q 003556 172 LTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETF----ELIGSAG------PETSGVRCLTFNP 237 (811)
Q Consensus 172 l~t~~~i~~~~---~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~----~~l~~~~------~~~~~I~sl~fsp 237 (811)
+..|++...-. .....-..|.|||++++..+.++ +++|-+|..... +.++.+. ....+...|..++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 99876533211 23455689999999998887764 899999998773 2233221 1134567888999
Q ss_pred CCCEEEEEEC--CCEEEEEecCCcee-ee---eeccccceeEeee-cCCCEEEEEECC-CeEEEEEecC
Q 003556 238 DGRTLLCGLH--ESLKVFSWEPIRCH-DA---VDVGWSRLSDLNV-HEGKLLGCSYNQ-SCVGVWVVDI 298 (811)
Q Consensus 238 dg~~Lasgs~--d~I~Vwd~~~~~~~-~~---~~~~~~~i~~l~~-~dg~lLasg~~D-g~V~IWdvd~ 298 (811)
||++|+++.. +.|.+|.+++.... .. .......-.++.+ +.|++|+++..+ ..|.+|..+-
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 9999999854 47999998876432 21 2222221234444 667788777665 5688886553
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=121.49 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=185.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc---------------eEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---------------AILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~---------------~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (811)
......|++|+. ...++++||.||.++|..+++.. .-+++.||...|.-+.|+.+.+.|-+...
T Consensus 13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345689999998 66789999999999999875431 12457799999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003556 80 SGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
+|.|.+|-+-.|.....+. ..++-|.+++|..+|..++..-.||.|.+=.++..+. +--.-.......+.|++|.+.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHHH
Confidence 9999999998876544432 2456789999999999999999999998887765432 211111223457899999999
Q ss_pred EEEEECCCeEEEEECCCC-------eEEEE----EecCCCCeEEEEEe--------CCCCEEEEEECCCeEEEEECCCCe
Q 003556 158 VVSGGEDNTVKLWDLTAG-------KLLHD----FKCHEGQIQCIDFH--------PHEFLLATGSADRTVKFWDLETFE 218 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~-------~~i~~----~~~h~~~V~sv~fs--------pdg~~Lasgs~Dg~I~IwDl~~~~ 218 (811)
++.+-..|.+.+||.... .+... +......|..+.|. |+...|+++..+|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 999989999999997532 11111 11122335666664 477899999999999887654433
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECCC--------EEEEEecC-CceeeeeeccccceeEeeecCC
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHES--------LKVFSWEP-IRCHDAVDVGWSRLSDLNVHEG 279 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~--------I~Vwd~~~-~~~~~~~~~~~~~i~~l~~~dg 279 (811)
....+.. ...+..+.|+++|.+|++++.+. -+|.-+.+ ++....+.+..+.++.+.+..+
T Consensus 251 ~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 251 EPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred CCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCC
Confidence 2222222 25688899999999999775432 12222222 3445556666666777666443
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=1.3e-07 Score=103.82 Aligned_cols=259 Identities=10% Similarity=0.018 Sum_probs=170.6
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEcCCCC------
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA----------SGTIKLWDLEEAKIVRTLTGHRS------ 102 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------DG~I~IWDl~t~~~v~~l~~h~~------ 102 (811)
++|.+.|..+.+.+..+..-..+-. + ++||++.|+++.. +..|.+||..+.+.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999888875444433 4 9999998877765 78999999999999988874222
Q ss_pred -CeEEEEEeCCCCEEEEEE-C-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003556 103 -NCISVDFHPFGEFFASGS-L-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLL 178 (811)
Q Consensus 103 -~I~sl~fspdg~~Lasgs-~-Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i 178 (811)
.-..++++|+|+++++.. . +..|.++|+.+++.+..+.-.. ...-...+.+.. + +-+.||......+. +|+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecCCCceE
Confidence 234789999999988776 3 6899999999999998887422 222222222222 1 12234443332222 12211
Q ss_pred -EE---EecCCCCe-EEEEEeC-CCCEEEEEECCCeEEEEECCC-----CeEEEEeCC-------CCCCeeEEEEecCCC
Q 003556 179 -HD---FKCHEGQI-QCIDFHP-HEFLLATGSADRTVKFWDLET-----FELIGSAGP-------ETSGVRCLTFNPDGR 240 (811)
Q Consensus 179 -~~---~~~h~~~V-~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~-----~~~l~~~~~-------~~~~I~sl~fspdg~ 240 (811)
.. |.....++ ..-.|.+ +|.++....+ |.|.+.|+.. .+.+..+.. ..+.+.-++++++|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100110 0014455 8888877776 9999999643 233322211 223445599999999
Q ss_pred EEEEEEC-----------CCEEEEEecCCceeeeeeccccceeEeeecCCC-EEEEEE-CCCeEEEEEecCCCcee
Q 003556 241 TLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQSCVGVWVVDISRIEP 303 (811)
Q Consensus 241 ~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~-lLasg~-~Dg~V~IWdvd~~~~~p 303 (811)
.+++... +.+.++|..+.+....+..+.........+|++ +|.+.. .++.|.+.|+.+.+...
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9998532 348888888888888888776655555668888 777655 67889999999886653
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=141.33 Aligned_cols=197 Identities=20% Similarity=0.402 Sum_probs=165.4
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
++.|-..|.|+.-+| ...+.+||+.||.|++|....++.+..+. .-...|+.+.|+.+|+-+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 445567788999888 66788999999999999998888877665 233889999999999999999999999999987
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS---LDTNLKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs---~Dg~I~IwDl~~---~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D 164 (811)
.++....+.|......+.|-. ..+++++ .++.+.+||.-- ..++. ..|.+.++++++.|....|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 677778888999999998874 6667654 467999999642 22344 7799999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC
Q 003556 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (811)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~ 224 (811)
|.|++||++..++++.++. ++ ...++++|+..|.++||++....+++.+.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999988887764 44 56799999999999999999888777654
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.3e-09 Score=115.17 Aligned_cols=230 Identities=18% Similarity=0.339 Sum_probs=161.5
Q ss_pred EEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEE-----EECCCeEEEEECCCCe
Q 003556 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAA-----GAASGTIKLWDLEEAK 92 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~DG~I~IWDl~t~~ 92 (811)
++..|++|+. |++--..+.+++|+....+.+. -.-|...|..+.++|... .+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 6888988443 4444456789999987643332 233678899999998733 4443 3445689999876322
Q ss_pred EEEEE---cCCCCCeEEEEEeCCCC-EEEEEE--CC---------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003556 93 IVRTL---TGHRSNCISVDFHPFGE-FFASGS--LD---------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 93 ~v~~l---~~h~~~I~sl~fspdg~-~Lasgs--~D---------g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
....+ .-....-..+.|++-|. +|+.++ .| .++++++++...+...+. ..++|.++.|+|+|+-
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence 21111 11223334678888776 333322 23 368888888555555554 5789999999999976
Q ss_pred EE--EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeE
Q 003556 158 VV--SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRC 232 (811)
Q Consensus 158 L~--sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~~I~s 232 (811)
++ .|..-..+.|||++ +..+..|. .++-+++-|+|.|++|+.++.+ |.|-|||+.+.+++..+.... -+-
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 55 45566789999987 56666654 6788999999999999988864 789999999999888876654 366
Q ss_pred EEEecCCCEEEEEE-------CCCEEEEEecCC
Q 003556 233 LTFNPDGRTLLCGL-------HESLKVFSWEPI 258 (811)
Q Consensus 233 l~fspdg~~Lasgs-------~d~I~Vwd~~~~ 258 (811)
+.|+|||+++++++ +++++||++...
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 78999999999775 457999998653
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=3.8e-08 Score=110.57 Aligned_cols=263 Identities=14% Similarity=0.059 Sum_probs=170.1
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003556 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~f 109 (811)
..+++++.+|.|..+|..+++.+..+............ ++..+++++.+|.+..||..+|+.+...... ..+.+.-.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence 35778888999999999999998876644332222322 4667888889999999999999988776532 22221111
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003556 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (811)
Q Consensus 110 spdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~-----si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (811)
. .+..++.++.+|.|+.||..+++.+..+......+. +..+ .+..++.+..+|.+..+|..+|+.+......
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1 355777788899999999999999888764332211 1112 2346788888999999999999887665421
Q ss_pred CC----C---eEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC-CCEEEEE
Q 003556 185 EG----Q---IQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFS 254 (811)
Q Consensus 185 ~~----~---V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd 254 (811)
.. . ...+.-+| .+..+++++.+|.++.||.++++.+...... ....... ++..++++.. +.+..++
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALD 295 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEE
Confidence 10 0 00011111 2457888888999999999999887765421 1122222 3456665544 4578888
Q ss_pred ecCCceeeee-eccccceeEeeecCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 255 WEPIRCHDAV-DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 255 ~~~~~~~~~~-~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
..+++..-.. ............ .+..++++..+|.|++|+.+++++.-
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 7766544222 111111111122 45678888999999999998887763
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.1e-09 Score=117.41 Aligned_cols=193 Identities=20% Similarity=0.305 Sum_probs=154.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-
Q 003556 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG- 141 (811)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~- 141 (811)
.+++++.-..-|++++....|+-++++.|..+..+....+.+++|..++...+|++|+.+|.|-.||.+....+.++..
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 4566655444455666678899999999999999988889999999999999999999999999999998776666542
Q ss_pred -----CCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCC--CCEEEEEECCCe
Q 003556 142 -----HTR-----GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPH--EFLLATGSADRT 208 (811)
Q Consensus 142 -----h~~-----~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~V~sv~fspd--g~~Lasgs~Dg~ 208 (811)
|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+.+..-. +..-+|..+.|.+. +..+++. ....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~ 295 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI 295 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH
Confidence 333 39999999999999999999999999999988776543 23457899999876 4455554 3568
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCC-EEEEEecC
Q 003556 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (811)
Q Consensus 209 I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (811)
++|||-.+|+....+.+.. .++.+++-|++-+++++.++. +..|-...
T Consensus 296 ~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEccc
Confidence 9999999999998887654 499999999999999997774 55555443
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.4e-10 Score=126.47 Aligned_cols=241 Identities=17% Similarity=0.295 Sum_probs=173.4
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC-------CCceEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~-------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs 78 (811)
...++.|.||+..|..++--. +.+-+++++.|.+|++|.+. +..+..++..|+.+|.++.|-.+-++++++
T Consensus 725 ~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 356788999999999987654 66779999999999999873 335778889999999999999998888765
Q ss_pred CCCeEEEEECCCCeEEEEEcC---C--CCCeEEEEEeCCCCEEE-EEECCCcEEEEECCCCeEEEEEec-----CCCCeE
Q 003556 79 ASGTIKLWDLEEAKIVRTLTG---H--RSNCISVDFHPFGEFFA-SGSLDTNLKIWDIRKKGCIHTYKG-----HTRGVN 147 (811)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~---h--~~~I~sl~fspdg~~La-sgs~Dg~I~IwDl~~~~~i~~~~~-----h~~~I~ 147 (811)
||.|++||.--+..+..+.. | .+.|.|+.- -+...++ .++...+|+++|.+.++....++. ....+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 89999999877766553321 2 223333321 1233444 447789999999998876665542 345689
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE-EECCCCeEEEEeCCC
Q 003556 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF-WDLETFELIGSAGPE 226 (811)
Q Consensus 148 si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I-wDl~~~~~l~~~~~~ 226 (811)
+++..+.|++++++-..|.|.+.|.++|+.+..+.........++ .|....|+....|.++.+ |-.-.+.......+.
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999999999999998887666555554 355667777778888888 877666655554443
Q ss_pred CCCeeEEEEecCCCEEEEEECCC-EEEE
Q 003556 227 TSGVRCLTFNPDGRTLLCGLHES-LKVF 253 (811)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~-I~Vw 253 (811)
..+..-+ -.-|..|++...+. +.||
T Consensus 960 pepahfl--qsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 960 PEPAHFL--QSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred Ccchhhh--hccCceeEEeccCcEEEEE
Confidence 3322211 12355566555443 4555
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=2.3e-09 Score=125.85 Aligned_cols=196 Identities=16% Similarity=0.253 Sum_probs=156.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC----eEEEEEeCCCCEEEEEECCCcEEEEECCCCeE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN----CISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~----I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 135 (811)
..|....+..+...++.++.+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44455556667788999999999999999988877766533221 11233455566899999999999999874433
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 136 i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
-..+.+|.+.|..+.|+-||+++++.++|..+++|++.+.+... ..-+|...|+.++|+|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33688999999999999999999999999999999999988766 44569999999999999 9999999999999976
Q ss_pred CCCeEEEEeCCC-CCCeeEEEEecCCCEEEEEECC-CEEEEEecCC
Q 003556 215 ETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (811)
Q Consensus 215 ~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (811)
. ++.+..+..| ...|+.++..++...++++.+| ++++|++...
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 5 4445566666 4568999999888888887766 6999998653
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=2.5e-09 Score=111.95 Aligned_cols=212 Identities=20% Similarity=0.353 Sum_probs=161.5
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEEC-CCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASG 81 (811)
Q Consensus 4 kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl-~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG 81 (811)
++.+.++.++||.+.|+....-|. ..-+++.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-..|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 456777889999999999998884 445899999999999964 3344333332 2357899999999999999999999
Q ss_pred eEEEEECC----CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE-------------------------------
Q 003556 82 TIKLWDLE----EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK------------------------------- 126 (811)
Q Consensus 82 ~I~IWDl~----t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~------------------------------- 126 (811)
++.-+.+. .....+....|...+..+-|+.....+++.+.|..+.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 99988663 3345555666777777777766555666655554321
Q ss_pred --------EEE--CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEeC
Q 003556 127 --------IWD--IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFHP 195 (811)
Q Consensus 127 --------IwD--l~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~V~sv~fsp 195 (811)
+.. ...-..+.++.+|.+.+.+++|.+....|++|..|..+.+||+--++ ...+..+|...|..+...+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 111 11223566778899999999999999999999999999999997544 3455667889999998888
Q ss_pred CCCEEEEEECCCeEEEEECCC
Q 003556 196 HEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 196 dg~~Lasgs~Dg~I~IwDl~~ 216 (811)
.-..|.+++.||.|.+||.+.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 888999999999999999864
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=5.6e-08 Score=109.20 Aligned_cols=255 Identities=15% Similarity=0.056 Sum_probs=164.5
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE---
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI--- 105 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~--- 105 (811)
+..++.++.+|.|+.||..+|+.+....... .+.+.... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 3457778889999999999999887765322 22211111 244677778899999999999998877764332211
Q ss_pred --EEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC----C---eEEEEEcC--CCCEEEEEECCCeEEEEECCC
Q 003556 106 --SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----G---VNAIRFTP--DGRWVVSGGEDNTVKLWDLTA 174 (811)
Q Consensus 106 --sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~----~---I~si~fsp--dg~~L~sgs~Dg~I~IwDl~t 174 (811)
+.... +..++.+..+|.+..+|.++++.+........ . ...+.-+| .+..+++++.+|.++.||..+
T Consensus 183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11122 34778888899999999999987765432110 0 00111111 356788888999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC-CCeeEEEEecCCCEEEEEECC-CEEE
Q 003556 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKV 252 (811)
Q Consensus 175 ~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~V 252 (811)
|+.+...... ...... ..+..+++++.||.|+.+|..+++.+....... ....+... .+..|+++..+ .+.+
T Consensus 261 G~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 9988776521 112222 245678888899999999999998876653221 22222222 35567766555 5888
Q ss_pred EEecCCceeeeeeccccce-eEeeecCCCEEEEEECCCeEEEE
Q 003556 253 FSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 253 wd~~~~~~~~~~~~~~~~i-~~l~~~dg~lLasg~~Dg~V~IW 294 (811)
++..+++....+..+...+ ..-...++ .|..++.||.|+.|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 8887777776666544322 22233444 47788889988776
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=3e-07 Score=101.07 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=157.8
Q ss_pred EeeCCCcEEEEEE---------CCCeEEEEECCCCceEEEecCCC-------CCeEEEEEcCCCCEEEEEE-C-CCeEEE
Q 003556 24 IGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGHT-------SGIDSVSFDSSEVLVAAGA-A-SGTIKL 85 (811)
Q Consensus 24 fsp~~~~lLatgs---------~Dg~I~VWdl~t~~~~~~l~~h~-------~~V~~l~fspdg~~Lasgs-~-DG~I~I 85 (811)
++|++..+.++.+ .+..|.+||..+.+.+..+.--. ..-..++++|+|+++++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8997666666666 68999999999999998887422 2334788999999998776 3 689999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeE-EEE---EecCCCCeE-EEEEcC-CCCEE
Q 003556 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGC-IHT---YKGHTRGVN-AIRFTP-DGRWV 158 (811)
Q Consensus 86 WDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-~~~-i~~---~~~h~~~I~-si~fsp-dg~~L 158 (811)
+|+.+++.+..+.-. +...-...+... ++ .-+.||......+.. ++. ... +.....++. .-.|.+ +|.++
T Consensus 133 vD~~~~kvv~ei~vp-~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVP-DCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCC-CCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 999999999988742 222222222222 22 223455554443332 111 111 111000100 003455 88888
Q ss_pred EEEECCCeEEEEECCCC-----eEEEEEec-------CCCCeEEEEEeCCCCEEEEEE----------CCCeEEEEECCC
Q 003556 159 VSGGEDNTVKLWDLTAG-----KLLHDFKC-------HEGQIQCIDFHPHEFLLATGS----------ADRTVKFWDLET 216 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~-----~~i~~~~~-------h~~~V~sv~fspdg~~Lasgs----------~Dg~I~IwDl~~ 216 (811)
+...+ |.|.+.|+... +....+.. ..+.+.-++++|+++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 99999996432 22222221 223345599999998888743 124799999999
Q ss_pred CeEEEEeCCCCCCeeEEEEecCCC-EEEEEE--CCCEEEEEecCCceeeee-eccc
Q 003556 217 FELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDAV-DVGW 268 (811)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~~-~~~~ 268 (811)
++.+..+.. ...+..++|+|||+ +|++.. .+.+.++|..+.+....+ .++.
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~ 343 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGR 343 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCC
Confidence 999988765 35789999999999 777654 346999999988877666 4443
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=2.9e-07 Score=115.50 Aligned_cols=238 Identities=14% Similarity=0.200 Sum_probs=161.8
Q ss_pred EEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecC-C-------------CCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 003556 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-H-------------TSGIDSVSFDSSEVLVAAGA-ASGTIK 84 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs-~DG~I~ 84 (811)
..+++++.+++++++-..++.|.+||.. +..+..+.+ . -.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688887677888888888999999975 444444332 1 12357899999888666654 457899
Q ss_pred EEECCCCeEEEEEcCC-----------------CCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecC----
Q 003556 85 LWDLEEAKIVRTLTGH-----------------RSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGH---- 142 (811)
Q Consensus 85 IWDl~t~~~v~~l~~h-----------------~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h---- 142 (811)
++|+.++.. .++.+. -..-..++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877653 333210 11235799999 4556667777899999998876542 22111
Q ss_pred -----------CCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEec-------------C--------CCCeE
Q 003556 143 -----------TRGVNAIRFTPDGRWVVS-GGEDNTVKLWDLTAGKLLHDFKC-------------H--------EGQIQ 189 (811)
Q Consensus 143 -----------~~~I~si~fspdg~~L~s-gs~Dg~I~IwDl~t~~~i~~~~~-------------h--------~~~V~ 189 (811)
-.....|+|+|+|.+|++ -+.++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123567999999986554 45568999999987653221100 0 01236
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEecCCCEEEEEECC-CEEEEEe
Q 003556 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (811)
.++|+++|.++++-..++.|++||..++........ .-.....++++++|+++++...+ .|++|+.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999999988888999999999988776543321 11246789999999877666544 5999998
Q ss_pred cCCce
Q 003556 256 EPIRC 260 (811)
Q Consensus 256 ~~~~~ 260 (811)
.+.+.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 76543
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.05 E-value=1.5e-08 Score=104.33 Aligned_cols=227 Identities=22% Similarity=0.243 Sum_probs=161.7
Q ss_pred CCEEEEEEee--CCCc-EEEEEECCCeEEEEECCCCceEEEecCCCC------CeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 17 STVNCLKIGR--KSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHTS------GIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 17 ~~V~~lafsp--~~~~-lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~------~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
+.++.+.|.. .++. .++-+..+|.|.++..........+.+-.. ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3466666653 2333 566777889999998765555555544221 245678899999999999999999766
Q ss_pred CCCCeE--EEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECC-CCeEEEE-EecCCCCeEEEEEcC-CCCEEEEE
Q 003556 88 LEEAKI--VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR-KKGCIHT-YKGHTRGVNAIRFTP-DGRWVVSG 161 (811)
Q Consensus 88 l~t~~~--v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~-~~~~i~~-~~~h~~~I~si~fsp-dg~~L~sg 161 (811)
...... ++.++.|.-+++...|+... +.+.+|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 555443 34788999999999998644 588999999999999999 4455554 567889999999887 67899999
Q ss_pred ECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEECCCCe-----EEEEeCCCCCCeeEE
Q 003556 162 GEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETFE-----LIGSAGPETSGVRCL 233 (811)
Q Consensus 162 s~Dg~I~IwDl~-t~~~i~~~~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~-----~l~~~~~~~~~I~sl 233 (811)
+.|-.|++||.+ .++.+..-. -.+.|+.+.++|. +.+|+++-.+| .+|-+...+. .+.....|.+-...-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 999999999999 566665544 3588999999995 34555555555 6666665432 233345555555555
Q ss_pred EEecCCCEEEEE
Q 003556 234 TFNPDGRTLLCG 245 (811)
Q Consensus 234 ~fspdg~~Lasg 245 (811)
.|.....+|+++
T Consensus 308 DWd~~~~~lATC 319 (339)
T KOG0280|consen 308 DWDSKDSFLATC 319 (339)
T ss_pred ccccccceeeee
Confidence 664444567764
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=6.4e-07 Score=95.37 Aligned_cols=250 Identities=18% Similarity=0.288 Sum_probs=171.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEEC---CCeEEEEECCC--CceEE--EecCCCCCeEEEEEcCCCCEEEEEEC-
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGK--PNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAA- 79 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~---Dg~I~VWdl~t--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~- 79 (811)
.+.++.++.+.++-++|+| +.+.|+++-. +|.|-.|.++. |..-. .......+-+.+++++++++|+++..
T Consensus 31 ~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 31 SLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred chhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc
Confidence 3345566778899999999 5556666643 57788888764 33221 11112234488999999999988865
Q ss_pred CCeEEEEECCC-CeE---EEEEcCCCCC----------eEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe---c
Q 003556 80 SGTIKLWDLEE-AKI---VRTLTGHRSN----------CISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYK---G 141 (811)
Q Consensus 80 DG~I~IWDl~t-~~~---v~~l~~h~~~----------I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~~~---~ 141 (811)
.|.|.++-++. |.+ +..+ .|.+. +.+..|.|++++|++.+. --.|.+|++..++....-. .
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred CceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 58899999865 432 2222 24444 788999999999988764 2369999998765432111 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEec---------CCCCeEEEEEeCCCCEEEEEEC-CCeE
Q 003556 142 HTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAG-KLLHDFKC---------HEGQIQCIDFHPHEFLLATGSA-DRTV 209 (811)
Q Consensus 142 h~~~I~si~fspdg~~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~---------h~~~V~sv~fspdg~~Lasgs~-Dg~I 209 (811)
....-+.|.|+|++++.+..+ -+++|.+|..... ..+..++. .......+..+++|++|.++.. ...|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 445678999999999887666 4899999998863 22222221 2345678899999999998753 2367
Q ss_pred EEEECCC--CeE--EEEeCCCCCCeeEEEEecCCCEEEEEECC--CEEEEEecCCc
Q 003556 210 KFWDLET--FEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIR 259 (811)
Q Consensus 210 ~IwDl~~--~~~--l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~ 259 (811)
.+|.+.. +++ +.....+....+...|+++|++|+++..+ .+.+|..+...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 7776643 332 33344555557999999999999998766 59999887643
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=6.1e-07 Score=110.71 Aligned_cols=281 Identities=16% Similarity=0.264 Sum_probs=183.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEE----ECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-- 89 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VW----dl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-- 89 (811)
.+.|.++.|.+ +...++.+..+|.|.++ +..... +...-.-..+|.+++|+||+.+|+..+.+|+|.+-+-.
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 46799999998 45568888889999999 443322 12222234799999999999999999999988876421
Q ss_pred -------------CCeEE--------EEEcC------------------------CCCCeEEEEEeCCCCEEEEEEC---
Q 003556 90 -------------EAKIV--------RTLTG------------------------HRSNCISVDFHPFGEFFASGSL--- 121 (811)
Q Consensus 90 -------------t~~~v--------~~l~~------------------------h~~~I~sl~fspdg~~Lasgs~--- 121 (811)
..+.+ ..|.| +.+.-..++|-.||.|||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00000 00100 2334567899999999999875
Q ss_pred C---CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEec----CCCCeEEE
Q 003556 122 D---TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE---DNTVKLWDLTAGKLLHDFKC----HEGQIQCI 191 (811)
Q Consensus 122 D---g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~---Dg~I~IwDl~t~~~i~~~~~----h~~~V~sv 191 (811)
. ..|++|+-+ |....+...-.+--.+++|.|.|++|++.-. ...|.+|. ++|-.-.+|.. ....|..+
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEE
Confidence 2 479999954 6655555444444568899999999998764 34577777 45655555543 35679999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCe--EEEEeCC-CCCCeeEEEEecCC-CEEEEEEC-CCEEEEEe--cCCce----
Q 003556 192 DFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGP-ETSGVRCLTFNPDG-RTLLCGLH-ESLKVFSW--EPIRC---- 260 (811)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~~~~--~l~~~~~-~~~~I~sl~fspdg-~~Lasgs~-d~I~Vwd~--~~~~~---- 260 (811)
.|++++..||....|. |.+|-..+.. +.+.+.. ....+..+.|+|.. ..|.+.+. +.+..++| .....
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999988666 9999988765 2233322 23345569999954 34555555 55555444 22111
Q ss_pred ------eeee------------------------eccccceeEeee-cCCCEEEEEECCCeEEEEEecCCCce
Q 003556 261 ------HDAV------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 261 ------~~~~------------------------~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
..++ ... ..+.++.+ +++..+++-..||.|.+|..+.....
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 1111 111 23344444 45556888889999999998776544
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=1.3e-06 Score=92.07 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=151.3
Q ss_pred EEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD-SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
++.|.+.++.++++--..+.|+.|+..++.... +.... ...+++. +++. |+.+.. +.+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeec
Confidence 578888678888888789999999998766543 22222 6777777 5654 445554 4456669998865544432
Q ss_pred -----CCCCeEEEEEeCCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 003556 100 -----HRSNCISVDFHPFGEFFASGSLD--------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDN 165 (811)
Q Consensus 100 -----h~~~I~sl~fspdg~~Lasgs~D--------g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~-sgs~Dg 165 (811)
.......+++.++|++.++.... |.|+.++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 33567899999999977776543 568888877 55443333 345578999999999776 455678
Q ss_pred eEEEEECCCC-e------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe-c
Q 003556 166 TVKLWDLTAG-K------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-P 237 (811)
Q Consensus 166 ~I~IwDl~t~-~------~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs-p 237 (811)
.|..|++... . ....+....+..-.+++..+|++.++....+.|.++|.+ ++.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 8999998632 1 122222222347889999999988888889999999988 88888876665689999994 6
Q ss_pred CCCEEEEEE
Q 003556 238 DGRTLLCGL 246 (811)
Q Consensus 238 dg~~Lasgs 246 (811)
+.+.|++.+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 777777554
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=3.5e-09 Score=129.10 Aligned_cols=190 Identities=18% Similarity=0.395 Sum_probs=155.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (811)
-..|.++.-+|...+.++|+.||.+++|....++.+..++. ....++.+.|+.+|+.+..+..||.+.+|.+. .++..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 34577777788888999999999999999999888777752 33789999999999999999999999999987 66777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 138 TYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 138 ~~~~h~~~I~si~fspdg~~L~sgs---~Dg~I~IwDl~t~---~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
..+.|......+.|-. ..+++++ +++.+.+||..-. -++. .+|.+.++++++-|...+|++|+.+|.|++
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 8888999999999975 5566654 4678999997532 2333 789999999999999999999999999999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeee
Q 003556 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA 263 (811)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~ 263 (811)
||++..++++.++. ++ ...++++|+.. .++||.+.....+..
T Consensus 2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 99999888877654 44 45677777554 699999987644433
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.97 E-value=2.6e-07 Score=101.53 Aligned_cols=278 Identities=14% Similarity=0.159 Sum_probs=187.4
Q ss_pred CCEEEEEEeeCCCcEEEEEECCC---------------eEEEEECCCCceEEEecCCCCC--eE-EEEEcCCCCEEEEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDH---------------KVNLWAIGKPNAILSLSGHTSG--ID-SVSFDSSEVLVAAGA 78 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg---------------~I~VWdl~t~~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs 78 (811)
..|.-+.|+| .+.+|.+-...+ .+.+||+.++..+..+.+...+ .+ -+.|+-+.+|+|-.
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 4588899999 788999876554 3999999999999999877666 55 68888888877655
Q ss_pred CCCeEEEEECCCCeEE-EEEcCC-CCCeEEEEEeCCCC--EEEE-----EECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003556 79 ASGTIKLWDLEEAKIV-RTLTGH-RSNCISVDFHPFGE--FFAS-----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (811)
Q Consensus 79 ~DG~I~IWDl~t~~~v-~~l~~h-~~~I~sl~fspdg~--~Las-----gs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si 149 (811)
....++|+++ ++..- .-+..- ...|....|+|.++ .|+. .+..+.+++|.+..+..+.+-.-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 4567999997 33221 111111 35688889999654 3443 4567899999998777665543333334568
Q ss_pred EEcCCCCEEEEEE-----------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE--ECCCeEEEEECCC
Q 003556 150 RFTPDGRWVVSGG-----------EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG--SADRTVKFWDLET 216 (811)
Q Consensus 150 ~fspdg~~L~sgs-----------~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg--s~Dg~I~IwDl~~ 216 (811)
.|.+.|++|+.-- ....+++++++...+.... ...++|...+|.|.+..+++. -.+-.+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 8999888776431 1356888888754443333 457899999999987655554 4788999999986
Q ss_pred CeEEEEeCCCCCCeeEEEEecCCCEEEEEECC----CEEEEEecCCc-eeeeeeccccceeEeeecCCCEEEEEEC----
Q 003556 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIR-CHDAVDVGWSRLSDLNVHEGKLLGCSYN---- 287 (811)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~~-~~~~~~~~~~~i~~l~~~dg~lLasg~~---- 287 (811)
. +...+ ..+.=+.+.|+|.+++++.++-+ .+.+|+-.... +...+...... .+-..++++++.+...
T Consensus 308 N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 308 N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-YCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce-EeeccCCceEEEecCCCccc
Confidence 6 33322 23445778899999999875443 47777765432 22233222221 1222378888877653
Q ss_pred --CCeEEEEEecCCCce
Q 003556 288 --QSCVGVWVVDISRIE 302 (811)
Q Consensus 288 --Dg~V~IWdvd~~~~~ 302 (811)
|..|.||++.....-
T Consensus 384 ~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 384 RVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccCcceEEEEecCchhh
Confidence 788999999876654
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=8.5e-07 Score=100.89 Aligned_cols=200 Identities=9% Similarity=-0.005 Sum_probs=131.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE-EEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL-VAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~ 114 (811)
..|.+-|.+... ...+... ..+....|+|+|+. ++..+. ...|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355555554333 3333333 37788999999984 554433 3569999998887655443 455566788999998
Q ss_pred EEEEEE-C--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCe
Q 003556 115 FFASGS-L--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQI 188 (811)
Q Consensus 115 ~Lasgs-~--Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~V 188 (811)
.++... . +..|+++|+..+.. ..+..+........|+|||+.|+..+.. | .|+++|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 766543 2 35788889887764 3444344334456899999988876643 2 688899988776443321 11
Q ss_pred EEEEEeCCCCEEEEEECC---------CeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 189 QCIDFHPHEFLLATGSAD---------RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 189 ~sv~fspdg~~Lasgs~D---------g~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
....|+|+|++|+..... ..|.+.|+.++.... +... .......|+|||+.|+....
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 124899999988877654 368888998876533 3222 22345889999998886543
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.8e-08 Score=112.00 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=207.1
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC------------CCEEEEEECCCe
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS------------EVLVAAGAASGT 82 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspd------------g~~Lasgs~DG~ 82 (811)
|...-.++.|+| +| ++|-|+. ..|.+.|..+-+.+..+.-|...|+.+.|.|. .-+|+++...|.
T Consensus 14 ~~sN~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 334467889998 44 4555554 56999999999999999999999999999762 126788888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCC---C-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPF---G-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRW 157 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspd---g-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fsp-dg~~ 157 (811)
|.+||...+..+..+..|.+++..++|-+. . ..|++-....+|.+|+..+|+.++++........|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999763 3 4566667778999999999999999887777788899999 7778
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEEecCCC-----------------C--------eEEEEEeCCCCEEEEEEC
Q 003556 158 VVSGGEDNTVKLWDLTA-------GKLLHDFKCHEG-----------------Q--------IQCIDFHPHEFLLATGSA 205 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~-----------------~--------V~sv~fspdg~~Lasgs~ 205 (811)
+...+..|.+.+.+.-. |+..+.-..|.. + ...++|+|.-+-++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 88888888888876532 233332222221 0 123567887655555566
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCC--CEEEEEECC-CEEEEEecCCc----------------eeeeee-
Q 003556 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG--RTLLCGLHE-SLKVFSWEPIR----------------CHDAVD- 265 (811)
Q Consensus 206 Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d-~I~Vwd~~~~~----------------~~~~~~- 265 (811)
...+.++|++-..++....-..+.+.-+.|-|++ ..|++...+ .+.+|--+... ..+++.
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 7889999999988998888777878888888875 467777555 47777644311 011110
Q ss_pred -ccccceeEeeecC-CCEEEEEECCCeEEEEEecCCCceeeee
Q 003556 266 -VGWSRLSDLNVHE-GKLLGCSYNQSCVGVWVVDISRIEPYTI 306 (811)
Q Consensus 266 -~~~~~i~~l~~~d-g~lLasg~~Dg~V~IWdvd~~~~~p~~~ 306 (811)
-.+.++.....+. ...++.-..+|.+.+|.+..+++.+...
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~ 373 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYR 373 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccc
Confidence 1122222333333 4455666778999999999877765443
No 275
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=2.7e-10 Score=130.18 Aligned_cols=224 Identities=20% Similarity=0.341 Sum_probs=172.0
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--e
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--T 82 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG--~ 82 (811)
|...+..|..|...-+|++|+- +.+.|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+... -
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 3445678889999999999998 788999999999999999999999999999999999999999999777765443 4
Q ss_pred EEEEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCE
Q 003556 83 IKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----HTRGVNAIRFTPDGRW 157 (811)
Q Consensus 83 I~IWDl~t-~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~----h~~~I~si~fspdg~~ 157 (811)
..+|++.+ +...+++. ...++.|+..-.+-+.|+......+||++++..+.++-. ....-.+..|+|+...
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 67999864 44555554 346788987655556666667799999999887766421 1222367889998876
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEec
Q 003556 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (811)
++ .|| .+||.+..+.++.|...... ..-.|||+|.-++..++ |||++++++++....... ..+.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEEecc
Confidence 66 355 58999998888877654422 33469999998888764 899999999887654432 6688999
Q ss_pred CCCEEEEEE
Q 003556 238 DGRTLLCGL 246 (811)
Q Consensus 238 dg~~Lasgs 246 (811)
.|..+++..
T Consensus 1312 tG~VmYa~~ 1320 (1516)
T KOG1832|consen 1312 TGDVMYAML 1320 (1516)
T ss_pred Cccchhhhh
Confidence 998887653
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.2e-07 Score=102.67 Aligned_cols=284 Identities=12% Similarity=0.171 Sum_probs=187.0
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEEC-----------CCeEEEEECCCCceEEEecCCC--CCe-EEEEEcCCCCEEEEEEC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGE-----------DHKVNLWAIGKPNAILSLSGHT--SGI-DSVSFDSSEVLVAAGAA 79 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~-----------Dg~I~VWdl~t~~~~~~l~~h~--~~V-~~l~fspdg~~Lasgs~ 79 (811)
.|. .|.-+.||| ..+||+|-+. ...++|||+.+|.....+.... ..+ .-..|+.|++|+|.-..
T Consensus 248 ~Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~ 325 (698)
T KOG2314|consen 248 YHP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG 325 (698)
T ss_pred cCC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc
Confidence 355 488999999 7889998743 2579999999998888776522 222 24679999999988765
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003556 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-----Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd 154 (811)
..|.||+..+..++..-.-.-..|....|+|.++.||.=+. -..+.+..+.+++.+++-.-|.-.=..+.|..+
T Consensus 326 -~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 326 -NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred -ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence 56999987764443322223467888999999888775432 235777888888777776655433345677778
Q ss_pred CCEEEEEEC----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCC----C
Q 003556 155 GRWVVSGGE----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLET----F 217 (811)
Q Consensus 155 g~~L~sgs~----------Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~----~ 217 (811)
|.+|+.--. -..+-|+.++........-.....|...+|-|.|..+++-+. ..++.+|-+++ .
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 888875321 123555666554433333334577889999999987777653 35799998873 2
Q ss_pred eEEEEeCCCCCCeeEEEEecCCCEEEEEE----CCCEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEEC-----
Q 003556 218 ELIGSAGPETSGVRCLTFNPDGRTLLCGL----HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN----- 287 (811)
Q Consensus 218 ~~l~~~~~~~~~I~sl~fspdg~~Lasgs----~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~----- 287 (811)
.++..+. ....+.+.|+|.|++++++. .+.+.+||.+-..+..+-.......+.+.+ +.|+++.+++.
T Consensus 485 ~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 485 SLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 2333332 24568899999999998663 335888887743333222222222223333 67899988875
Q ss_pred -CCeEEEEEecCCCce
Q 003556 288 -QSCVGVWVVDISRIE 302 (811)
Q Consensus 288 -Dg~V~IWdvd~~~~~ 302 (811)
|.--++|++.+..+.
T Consensus 563 ~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLK 578 (698)
T ss_pred cccceEEEEeecHHHH
Confidence 455678887776554
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=2.1e-07 Score=102.11 Aligned_cols=279 Identities=11% Similarity=0.106 Sum_probs=188.6
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-------------
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG------------- 81 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG------------- 81 (811)
-.-++..++|+| .|++|++....| |.+|.-.....+..+. ...|..+.|+|.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecC-cchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 455788999999 678888877665 9999876666555554 35789999999999999876543
Q ss_pred --eEEEEECCCCeEEEEEcCCCCC--eE-EEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecC-CCCeEEEEEcCC
Q 003556 82 --TIKLWDLEEAKIVRTLTGHRSN--CI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGH-TRGVNAIRFTPD 154 (811)
Q Consensus 82 --~I~IWDl~t~~~v~~l~~h~~~--I~-sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~~~~h-~~~I~si~fspd 154 (811)
.+.+||+.++.++..+.+...+ .+ -+.|+-+..|+|-. ....++|+++ ++.. ...+..- ...|....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 4999999999999999876665 55 68899888877665 3456999997 3321 1111111 356888899995
Q ss_pred CC--EEEE-----EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-----------CCCeEEEEECCC
Q 003556 155 GR--WVVS-----GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-----------ADRTVKFWDLET 216 (811)
Q Consensus 155 g~--~L~s-----gs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs-----------~Dg~I~IwDl~~ 216 (811)
|+ .|+. .+..+.+++|.+..+..+.+.......-..+.|++.|.+|++-- ....++|++++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 43 3443 35678999999987776665443334446788999998776532 234688898885
Q ss_pred CeEEEEeCCCCCCeeEEEEecCCCEEEEEE--CC-CEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEEC---CCe
Q 003556 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGL--HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN---QSC 290 (811)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs--~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~---Dg~ 290 (811)
....... ...++|...+|.|.++.+++.+ .. .+.++++...-.+... ....-+.++.+.+++++.++- .|.
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEecC--CcccccccccCcccEEEEecCCccccc
Confidence 4433332 5578999999999988777554 22 5788887765222211 112223444456666655443 378
Q ss_pred EEEEEecCCCce
Q 003556 291 VGVWVVDISRIE 302 (811)
Q Consensus 291 V~IWdvd~~~~~ 302 (811)
+-+|+....-..
T Consensus 342 i~i~~~~~rf~~ 353 (561)
T COG5354 342 IEIFDPAGRFKV 353 (561)
T ss_pred eEEeccCCceEE
Confidence 889987764433
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=1.6e-06 Score=107.07 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=163.8
Q ss_pred CCEEEEEEeeCCCcEEEEEECCC---eEEEEECCCCc---eEEEec-----CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDH---KVNLWAIGKPN---AILSLS-----GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg---~I~VWdl~t~~---~~~~l~-----~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (811)
..+...+|.+....++++.+... .|.+....... .+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 36778888886655555544332 24444433222 333333 23468999999999999999999999999
Q ss_pred E----ECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---------------------
Q 003556 86 W----DLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------------------- 138 (811)
Q Consensus 86 W----Dl~t~~--~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------------------- 138 (811)
+ +..+.. .+.. -...|.+++|+||++.|+..+.+++|.+.+- +..++..
T Consensus 102 ~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 9 544432 3333 4578999999999999999999998887742 1111111
Q ss_pred ---Eec------------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCeEEEEEecCC
Q 003556 139 ---YKG------------------------HTRGVNAIRFTPDGRWVVSGGE---D---NTVKLWDLTAGKLLHDFKCHE 185 (811)
Q Consensus 139 ---~~~------------------------h~~~I~si~fspdg~~L~sgs~---D---g~I~IwDl~t~~~i~~~~~h~ 185 (811)
|.| +...-..|+|-.||.++++.+. . ..|++|+- .|.+......-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCC
Confidence 100 2224467899999999998875 3 46999995 477666555444
Q ss_pred CCeEEEEEeCCCCEEEEEEC---CCeEEEEECCC---CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCc
Q 003556 186 GQIQCIDFHPHEFLLATGSA---DRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR 259 (811)
Q Consensus 186 ~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~---~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~ 259 (811)
+--.+++|-|.|.+||+... ...|.+|.-+. ++....+......|..+.|++|+..|++...+.|.+|......
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 55568899999999998864 34677787433 2222223345678999999999999999988889999877654
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.7e-07 Score=102.04 Aligned_cols=272 Identities=11% Similarity=0.179 Sum_probs=182.2
Q ss_pred EEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEEC
Q 003556 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----------SGTIKLWDL 88 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------DG~I~IWDl 88 (811)
+-+.||| -|.||+|-...| |.+|-=.+-..++.+. | ..|.-+.|+|..+||++-+. ...++|||+
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 5688999 678999998877 8899755545555554 4 46889999999999998654 257999999
Q ss_pred CCCeEEEEEcCCCC--C-eEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-
Q 003556 89 EEAKIVRTLTGHRS--N-CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED- 164 (811)
Q Consensus 89 ~t~~~v~~l~~h~~--~-I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D- 164 (811)
.+|...+.+....+ . -.-+.|+.|++|+|.-..+ .|.||+..+...+-.-.-.-..|....|+|.++.|+.-...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999888875322 2 2346899999999988775 49999987754443222234678899999998888754432
Q ss_pred ----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-------C---CeEEEEECCCCeEEEEeCCCCCCe
Q 003556 165 ----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-------D---RTVKFWDLETFELIGSAGPETSGV 230 (811)
Q Consensus 165 ----g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~-------D---g~I~IwDl~~~~~l~~~~~~~~~I 230 (811)
..+.+..+-+++.+..-..+.-.=..+.|-.+|.+|+.--. . ..+.|+.++.....-..-.....|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 35677777777776665544444456777778888876431 1 124455554433222222335678
Q ss_pred eEEEEecCCCEEEEEECC----CEEEEEecCC-ce---eeeeeccccceeEe-eecCCCEEEEEE---CCCeEEEEEecC
Q 003556 231 RCLTFNPDGRTLLCGLHE----SLKVFSWEPI-RC---HDAVDVGWSRLSDL-NVHEGKLLGCSY---NQSCVGVWVVDI 298 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d----~I~Vwd~~~~-~~---~~~~~~~~~~i~~l-~~~dg~lLasg~---~Dg~V~IWdvd~ 298 (811)
...+|-|.|..+++-+.+ ++.+|..+.. .. ...++. .....+ ..+.|++++++. ..|.+.++|++.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 889999999887754433 5889988842 11 111222 111223 337888887653 468888998886
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.1e-06 Score=95.75 Aligned_cols=249 Identities=17% Similarity=0.205 Sum_probs=172.0
Q ss_pred CCcEEEEEECCCeEEEEECC-CCceEEEecCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC---C-
Q 003556 28 SSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTS--GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG---H- 100 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~-t~~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~---h- 100 (811)
++++.+....+|.=++|.++ +|+-+. .|++ .-.+-..+.||+.++. +..|.|.+||..+......--+ .
T Consensus 235 ~~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~r 310 (668)
T COG4946 235 GERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDR 310 (668)
T ss_pred cceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccc
Confidence 44555666666655555442 233332 2332 1223334668888866 4578999999877654322111 0
Q ss_pred --CC-----CeEEEE-EeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEEEE
Q 003556 101 --RS-----NCISVD-FHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN-TVKLW 170 (811)
Q Consensus 101 --~~-----~I~sl~-fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg-~I~Iw 170 (811)
.. +..-+. |++ +|++++..|. |...|.+...+-.++. +|...|.-..+..+++-++.|..|| .+-||
T Consensus 311 k~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 311 KKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred ccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEE
Confidence 00 111111 332 5888888875 7788888766654432 4677799888988888999999999 89999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC--
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-- 248 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-- 248 (811)
|..+++... +...-+.|.++..+++|++++.+.....|.++|+.+++....-+...+-|+.+.|||+++++|-+..+
T Consensus 388 d~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 388 DKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred ecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 999886544 45567889999999999999999999999999999998776666677889999999999999987654
Q ss_pred ---CEEEEEecCCceeeeeeccccceeEeeecCCCEEEE
Q 003556 249 ---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGC 284 (811)
Q Consensus 249 ---~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLas 284 (811)
.|++||++..+..++..-.....+..+-+++++|.-
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 499999998887766533333233334467776654
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=7.3e-07 Score=92.92 Aligned_cols=216 Identities=15% Similarity=0.091 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCeEEEEEcCC--CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003556 80 SGTIKLWDLEEAKIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h--~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
+|+|..||..+|+.+.....- .....+. ..+++.++++++.++.|+.||..+|+.+..+.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 689999999999998888631 1222221 333577888888999999999999999988875 22222111 224556
Q ss_pred EEEEECCCeEEEEECCCCeEEEEE-ecCC---CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC----
Q 003556 158 VVSGGEDNTVKLWDLTAGKLLHDF-KCHE---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---- 229 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~-~~h~---~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~---- 229 (811)
+++++.++.|+.+|..+|+.+..+ .... ...........+..++++..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778899999999999999884 4221 11223333334778899998999999999999998876553322
Q ss_pred ------eeEEEEecCCCEEEEEECCC--EEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCc
Q 003556 230 ------VRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 230 ------I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
+..-.+..++ .++++..++ +.+ +..+++..- .........+...++..|+++..++.|..||+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 1222223345 555555444 444 777776442 2223333343446677777777999999999999886
Q ss_pred e
Q 003556 302 E 302 (811)
Q Consensus 302 ~ 302 (811)
.
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=5.7e-09 Score=114.19 Aligned_cols=239 Identities=19% Similarity=0.227 Sum_probs=163.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003556 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (811)
Q Consensus 52 ~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-------~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~ 124 (811)
+..+.||+..|..++--.+.+-+++++.|.+|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456779999999988877888889999999999999852 34677888999999999999888888775 788
Q ss_pred EEEEECCCCeEEEEEec--CCCCeEEEEEcC--CCCEEEEE-ECCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEe
Q 003556 125 LKIWDIRKKGCIHTYKG--HTRGVNAIRFTP--DGRWVVSG-GEDNTVKLWDLTAGKLLHDFKC-----HEGQIQCIDFH 194 (811)
Q Consensus 125 I~IwDl~~~~~i~~~~~--h~~~I~si~fsp--dg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~-----h~~~V~sv~fs 194 (811)
|.+||.--++.+..+.. ..+.+..+..-+ +...+.+| +...+|+++|.+..+-..+++. ..+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999877776654321 122233333334 33344444 5788999999999877666653 33558899999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEE-EECCCEEE-EEecCCceeeeeecccccee
Q 003556 195 PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC-GLHESLKV-FSWEPIRCHDAVDVGWSRLS 272 (811)
Q Consensus 195 pdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las-gs~d~I~V-wd~~~~~~~~~~~~~~~~i~ 272 (811)
+.|++++.+-.+|+|.+.|.++|+.+..+++.......++ .|..+.|+. +.+.++.| |.--.+..+-...-.-.+-
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa- 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA- 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch-
Confidence 9999999999999999999999999988887766665555 344455553 34445555 5433322221111100000
Q ss_pred EeeecCCCEEEEEECCCeEEEE
Q 003556 273 DLNVHEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 273 ~l~~~dg~lLasg~~Dg~V~IW 294 (811)
-+.-.-|.-|+++.+...+++|
T Consensus 964 hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 964 HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhhhccCceeEEeccCcEEEEE
Confidence 0000224566666666666666
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=9.8e-08 Score=107.58 Aligned_cols=244 Identities=13% Similarity=0.162 Sum_probs=180.9
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
|++.||++.|.-+.|+. ..+-|-|...+|-|.||-+-++...... ....+-|.+++|+.+|..++....||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 68999999999999997 5566899999999999998777654322 23457899999999999999999999998887
Q ss_pred CCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-------eEEEE----EecCCCCeEEEEEc---
Q 003556 88 LEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHT----YKGHTRGVNAIRFT--- 152 (811)
Q Consensus 88 l~t~~~v~-~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~-------~~i~~----~~~h~~~I~si~fs--- 152 (811)
++..+... .+++ .....+.|++|.+.++.+-.+|.+.+||.+.. .+... +......|-.+.|.
T Consensus 144 vdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 144 VDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 76544322 2222 22346889999999888888999999997532 12111 11122335566664
Q ss_pred -----CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---------CeEEEEECCCCe
Q 003556 153 -----PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---------RTVKFWDLETFE 218 (811)
Q Consensus 153 -----pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D---------g~I~IwDl~~~~ 218 (811)
||...|+++...|.+.|..-.+......+. ....+..+.|+++|..||+++.+ +.|++|.. -|+
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~ 299 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGH 299 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chh
Confidence 477789999999998887544433333333 23678899999999999998864 35777753 477
Q ss_pred EEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCC
Q 003556 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (811)
.+..++.....|++++|-..|-.++.+.+..|.+-+..+.
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 8888888899999999999998898888877776666553
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=1.8e-06 Score=108.53 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=154.7
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcC-C-------------CCCeEEEEEeCCCCEEEEEEC-CCcEE
Q 003556 63 DSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTG-H-------------RSNCISVDFHPFGEFFASGSL-DTNLK 126 (811)
Q Consensus 63 ~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~v~~l~~-h-------------~~~I~sl~fspdg~~Lasgs~-Dg~I~ 126 (811)
..+++++. +.++++-..++.|.+||.. +..+..+.+ . -.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788764 5566676778899999976 444444432 1 123478999998887666554 56799
Q ss_pred EEECCCCeEEEEEecC-----------------CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC----
Q 003556 127 IWDIRKKGCIHTYKGH-----------------TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH---- 184 (811)
Q Consensus 127 IwDl~~~~~i~~~~~h-----------------~~~I~si~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h---- 184 (811)
.+|+.++. +.++.+- -..-..++|+| ++..+++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987764 4333210 11235799999 5566666677899999999877543 22111
Q ss_pred -----------CCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCeEEEEeC-------------CC--------CCCee
Q 003556 185 -----------EGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFELIGSAG-------------PE--------TSGVR 231 (811)
Q Consensus 185 -----------~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~l~~~~-------------~~--------~~~I~ 231 (811)
-.....++|+|++. ++++-+.++.|++||+.++....... .. -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12346799999988 44555667899999998765321110 00 11246
Q ss_pred EEEEecCCCEEEEEECC-CEEEEEecCCceeeeeecc-------------ccceeEeee-cCCCEEEEEECCCeEEEEEe
Q 003556 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-------------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-------------~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
.++|+++|.++++...+ .|++|+.+..........+ ......+.+ .+|+++++-..+++|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999876665544 6999998876554332211 112233433 67888888899999999999
Q ss_pred cCCCc
Q 003556 297 DISRI 301 (811)
Q Consensus 297 d~~~~ 301 (811)
++++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98775
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=8.9e-07 Score=100.73 Aligned_cols=194 Identities=9% Similarity=-0.022 Sum_probs=128.5
Q ss_pred CEEEEEEeeCCCcEEEE-EEC--CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-C--CCeEEEEECCCC
Q 003556 18 TVNCLKIGRKSSRVLVT-GGE--DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-A--SGTIKLWDLEEA 91 (811)
Q Consensus 18 ~V~~lafsp~~~~lLat-gs~--Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~--DG~I~IWDl~t~ 91 (811)
.+....|+|++.++++. ... +..|+++|+.+++...... ..+......|+|||+.|+... . +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 66789999976653443 333 3579999998776655443 455667788999998766543 2 356888898877
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC----
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---- 164 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D---- 164 (811)
+... +..+........|+|||+.|+..+.. + .|+++|+.+++....... .. ....|+|||++|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6443 44344334456899999987776642 2 688889987765333221 11 134899999998877654
Q ss_pred -----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCe
Q 003556 165 -----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFE 218 (811)
Q Consensus 165 -----g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~ 218 (811)
..|.+.|+.++... .+... .......|+|||+.|+..+.++ .+.++++....
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 36888898887643 33322 2334588999999887766432 46677776543
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=4.1e-08 Score=111.08 Aligned_cols=282 Identities=17% Similarity=0.238 Sum_probs=184.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCC-ceEEEec-CCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCC-
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLS-GHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEE- 90 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~-~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t- 90 (811)
.+++..+.++| .++-+|+++.-| +.+.|+... ....-+. -..-.|-.+.|++. ..+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45688899999 566678887776 667777543 3322222 11235777888764 34556666677778999853
Q ss_pred --CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 91 --AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 91 --~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~-~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~ 166 (811)
..+-..+.+|...|+.+.|+|... .+++++.|..+..||++... ++..+.........++|+-....+++.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 344556778999999999999765 78999999999999998754 45555555566788999875555666677888
Q ss_pred EEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEecCCCEEE
Q 003556 167 VKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLL 243 (811)
Q Consensus 167 I~IwDl~t~-~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~l~-~~~~~~~~I~sl~fspdg~~La 243 (811)
|.+||++.| ..+..+++|...|+.+.|+.- ...+.+.+.||+|++||..+..... .......+|.--.|.|-|.-.+
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999865 567778888888999998764 4578888999999999987643222 1223345666666766544322
Q ss_pred EE---ECCCEEEEEecCC----------ceeeeeeccccceeEeee-----------cCCCEEEEEECCCeEEEEEecCC
Q 003556 244 CG---LHESLKVFSWEPI----------RCHDAVDVGWSRLSDLNV-----------HEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 244 sg---s~d~I~Vwd~~~~----------~~~~~~~~~~~~i~~l~~-----------~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
.- +.+.+.+++.+.. +....+..+...+..+.+ ...-.|++-+-|..+++|.++..
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 21 1112333332221 112222222222211111 11347889999999999988754
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=5.2e-07 Score=92.01 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=153.3
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEE
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS 106 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~~~l-~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~s 106 (811)
..+||.||..|.+.+|...+.+....+ ..|...|+-+.=..+ ..-+..++.|.++++.+++-+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 347999999999999999866554433 334444432221111 223556677888888887654332222211123788
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCe--EEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE---
Q 003556 107 VDFHPFGEFFASGSLDTNLKIWDIRKKG--CIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD--- 180 (811)
Q Consensus 107 l~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~-~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~--- 180 (811)
+.+++++.++++.+....|..|.+.... .+. ........-.+..|+.....+|++..||++.|||++.-.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999999999999999999999887532 222 2223344567889999999999999999999999986443222
Q ss_pred --EecCCCCeEEEEEeCCCC--EEEEEECCCeEEEEECCCCeEEEEeCCC--------CCCeeEEEEecCCCEEEEEECC
Q 003556 181 --FKCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFELIGSAGPE--------TSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 181 --~~~h~~~V~sv~fspdg~--~Lasgs~Dg~I~IwDl~~~~~l~~~~~~--------~~~I~sl~fspdg~~Lasgs~d 248 (811)
-..|.+.+..+.|++.|. +|...-.-+.+.+.|++++.....+... ...|..-.|+.++.-+.+..+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 224789999999998653 5555555678999999998765554322 2336777788777777766655
Q ss_pred CEEEEEec
Q 003556 249 SLKVFSWE 256 (811)
Q Consensus 249 ~I~Vwd~~ 256 (811)
.+.=|+..
T Consensus 324 ~~ae~ni~ 331 (344)
T KOG4532|consen 324 QGAEYNIL 331 (344)
T ss_pred hhheeecc
Confidence 44444433
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.6e-06 Score=98.22 Aligned_cols=257 Identities=13% Similarity=0.017 Sum_probs=159.7
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEE-EEE
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDF 109 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~s-l~f 109 (811)
.++.++.+|.++.+|..+|+.+............... .+..++.++.+|.|..+|..+|+.+..+......+.. ..-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 4667778999999999999998877643221111111 2346667788999999999999998877632111100 000
Q ss_pred eC--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEE
Q 003556 110 HP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-------GVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLL 178 (811)
Q Consensus 110 sp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~-------~I~si~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~i 178 (811)
+| .+..++.++.+|.+..+|..+++.+........ ....+..+| .+..++.++.+|.+..+|..+|+.+
T Consensus 200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 11 134577788899999999999987766542110 011111223 3556777888999999999999887
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC-CCeeEEEEecCCCEEEEEECC-CEEEEEec
Q 003556 179 HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 179 ~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (811)
...... ....+. ..+..|+.++.+|.+..+|..+++.+....... ....+..+. +| +|+++..+ .+.+++..
T Consensus 280 W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 280 WKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-YLVVGDSEGYLHWINRE 353 (394)
T ss_pred EeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-EEEEEeCCCEEEEEECC
Confidence 765421 111222 245678888899999999999998776543211 112222222 34 55555544 57777877
Q ss_pred CCceeeeeecccccee-EeeecCCCEEEEEECCCeEEEEEe
Q 003556 257 PIRCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 257 ~~~~~~~~~~~~~~i~-~l~~~dg~lLasg~~Dg~V~IWdv 296 (811)
+++.....+.....+. .-... +..|.+++.||.|+.+..
T Consensus 354 tG~~~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEEcCCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence 7776655544322222 11223 446777789999887754
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=2e-06 Score=89.64 Aligned_cols=217 Identities=18% Similarity=0.119 Sum_probs=143.6
Q ss_pred CCCeEEEEECCCCceEEEecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC
Q 003556 37 EDHKVNLWAIGKPNAILSLSGHT--SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (811)
Q Consensus 37 ~Dg~I~VWdl~t~~~~~~l~~h~--~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~ 114 (811)
++|.|..||..+++.+....--. ....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 36899999999999998886411 222211 233566777878999999999999999888774 22221111 22456
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC---
Q 003556 115 FFASGSLDTNLKIWDIRKKGCIHTY-KGHT---RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ--- 187 (811)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~~~~~i~~~-~~h~---~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~--- 187 (811)
.+++++.++.|+.+|..+++.+... .... ..........++..++++..++.|..+|..+|+.+..+......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 7777778899999999999999884 4321 11222233334788999999999999999999999988764322
Q ss_pred -------eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE-CCCEEEEEecCCc
Q 003556 188 -------IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIR 259 (811)
Q Consensus 188 -------V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~ 259 (811)
+..-.+..++ .++.++.++.+.-+|+.+++.+.... ...+..+ ...++..|++++ ++.+..||..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1122222344 77777777754444999999775433 2223332 356777888776 4568888888765
Q ss_pred e
Q 003556 260 C 260 (811)
Q Consensus 260 ~ 260 (811)
.
T Consensus 234 ~ 234 (238)
T PF13360_consen 234 V 234 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.5e-07 Score=97.44 Aligned_cols=241 Identities=21% Similarity=0.344 Sum_probs=165.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEeCCCC--EEEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHR------------SNCISVDFHPFGE--FFASG 119 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~------------~~I~sl~fspdg~--~Lasg 119 (811)
...|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++. .|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999765432 233355554 2467888877654 57777
Q ss_pred ECCCcEEEEECCCCe-------------------E------------------E-----EEE-ecCCCCeEEEEEcCCCC
Q 003556 120 SLDTNLKIWDIRKKG-------------------C------------------I-----HTY-KGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 120 s~Dg~I~IwDl~~~~-------------------~------------------i-----~~~-~~h~~~I~si~fspdg~ 156 (811)
+.|.+|++|-+.... + + +.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999875431 0 0 001 24667788999999988
Q ss_pred EEEEEECCCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeE------EE
Q 003556 157 WVVSGGEDNTVKLWDLTAGK---LLHDFKCHE-----GQIQCIDFHPHE-FLLATGSADRTVKFWDLETFEL------IG 221 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~-----~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~------l~ 221 (811)
.++++ .|=.|.+|++.-.. .+..++.|. .-|++..|||.. ..+.-.+..|.|++-|++...+ +.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88776 68889999987432 233344443 348899999963 4566667789999999984221 11
Q ss_pred E----------eCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCc-eeeeee----------------ccccceeEe
Q 003556 222 S----------AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR-CHDAVD----------------VGWSRLSDL 274 (811)
Q Consensus 222 ~----------~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~-~~~~~~----------------~~~~~i~~l 274 (811)
. +..-...|..+.|+++|+||++-...+++|||....+ +...+. .-+.....-
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1 1122356788999999999999888899999987532 333321 122223333
Q ss_pred eecCCCEEEEEECCCeEEEEEecCCC
Q 003556 275 NVHEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 275 ~~~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
+..+.+.+.+|+......|+.++++-
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred ecCCcccccccccccceeeeccccCC
Confidence 34567778888888888888765543
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.4e-08 Score=104.07 Aligned_cols=249 Identities=16% Similarity=0.184 Sum_probs=181.9
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKLWDLE 89 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~IWDl~ 89 (811)
-|.+.|+.+.... ..++.+++.||.++.|.-.. -+.+..+..|-..|..++.+-++.++++++. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4888888877664 57899999999999998532 2344556678889999999999999999777 9999999998
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCC---EEEEE-ECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003556 90 EAKIVRTLTGHRSNCISVDFHPFGE---FFASG-SLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 90 t~~~v~~l~~h~~~I~sl~fspdg~---~Lasg-s~Dg~I~IwDl~~~~--~i~~~~~h~~~I~si~fspdg~~L~sgs~ 163 (811)
+...+..++-..-+=.+-.+...|. .|+++ -.+|.|.++|-.... ....-+-|..+|.++.+.+-+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8766544332111111112222232 34443 357899999976543 23344568999999999999999999999
Q ss_pred CCeEEEEECCC------CeEEEEEe---------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC---
Q 003556 164 DNTVKLWDLTA------GKLLHDFK---------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--- 225 (811)
Q Consensus 164 Dg~I~IwDl~t------~~~i~~~~---------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~--- 225 (811)
.|.|..|.... .+....++ -......++.|+|+|..+.+-..|..|+++++++++.+..+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 22222222 1234578999999999999999999999999998876544211
Q ss_pred -----------------------------C-CCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeee
Q 003556 226 -----------------------------E-TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (811)
Q Consensus 226 -----------------------------~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (811)
+ ...-+.+.|...|++|+.|+-=+|+|++++++++..++
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1 12235677999999999998889999999998876654
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=4.7e-07 Score=103.33 Aligned_cols=237 Identities=16% Similarity=0.234 Sum_probs=177.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCC------------CCEEEEEECCCcEEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF------------GEFFASGSLDTNLKI 127 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspd------------g~~Lasgs~Dg~I~I 127 (811)
..-.++.|++.| +|+.|+ ...|.+.|..+.+.++.+.-|...|+.+.|.|. .-.||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346778999887 566654 567999999999999999999999999999873 125788888999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEE
Q 003556 128 WDIRKKGCIHTYKGHTRGVNAIRFTP---DG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLAT 202 (811)
Q Consensus 128 wDl~~~~~i~~~~~h~~~I~si~fsp---dg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp-dg~~Las 202 (811)
||...+..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+....+........|+.+.| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 99999988888988999999999987 33 4666667788999999999999998887777788899999 4556666
Q ss_pred EECCCeEEEEECCC-------CeEEEEeCCCCC----------------C---------eeEEEEecCC-CEEEEEECCC
Q 003556 203 GSADRTVKFWDLET-------FELIGSAGPETS----------------G---------VRCLTFNPDG-RTLLCGLHES 249 (811)
Q Consensus 203 gs~Dg~I~IwDl~~-------~~~l~~~~~~~~----------------~---------I~sl~fspdg-~~Lasgs~d~ 249 (811)
-+..|.+.+.+.-. ++.++....|.. . ...++|+|.- +.++......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 66677777766421 333332222211 0 1224677764 4566677778
Q ss_pred EEEEEecCCceeeeeeccccc--eeE-eeecCCCEEEEEECCCeEEEEEecC
Q 003556 250 LKVFSWEPIRCHDAVDVGWSR--LSD-LNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~~~--i~~-l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
+.|+|++-..|...+...... +.+ +-.+....|.|.-.||++.+|.-..
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999999988888877655542 222 2235567999999999999997665
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=1.3e-05 Score=85.44 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=160.7
Q ss_pred EEEEEeeCCCcEEEEEECCCe-EEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECC-C
Q 003556 20 NCLKIGRKSSRVLVTGGEDHK-VNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAA-----SGTIKLWDLE-E 90 (811)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~-I~VWdl~t~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----DG~I~IWDl~-t 90 (811)
..++.+|.....++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 457788877777777877664 6789999998887776433322 14689999999998643 4899999998 6
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE------------------CCCcEEEEECCCCeEEEEEe----cCCCCeEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS------------------LDTNLKIWDIRKKGCIHTYK----GHTRGVNA 148 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs------------------~Dg~I~IwDl~~~~~i~~~~----~h~~~I~s 148 (811)
.+.+..+..|.-.-..+.+.|+|+.|+++. .+..+...|..+++.+.+.. .|...|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 788888888877777889999998877763 12356777888888877743 37778999
Q ss_pred EEEcCCCCEEEEEECCC-------eEEEEECCCCeEEEEEe-------cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEE
Q 003556 149 IRFTPDGRWVVSGGEDN-------TVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWD 213 (811)
Q Consensus 149 i~fspdg~~L~sgs~Dg-------~I~IwDl~t~~~i~~~~-------~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwD 213 (811)
+++.++|..++..-..| .|.+++. +..+..+. ...+.+-+|++++++.++++.+ ..+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999987666554433 2344443 33233332 2346789999999998776655 567899999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCC
Q 003556 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES 249 (811)
Q Consensus 214 l~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (811)
..++..+...... .+..++-.+++ +++++..+.
T Consensus 246 ~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 9999998776443 35667767666 555554443
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=3.8e-06 Score=95.10 Aligned_cols=263 Identities=10% Similarity=0.017 Sum_probs=160.0
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCCC----------CeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS----------GID-SVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~----------~V~-~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
.+++++.+|.|.-+|..+|+.+........ .+. .+.. .+..++.++.+|.+..+|.++|+.+.....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 567777889999999999998887653220 000 0111 345677888899999999999998877664
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEEEEECCCeEEEEECCCCe
Q 003556 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-IRFTP--DGRWVVSGGEDNTVKLWDLTAGK 176 (811)
Q Consensus 100 h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~s-i~fsp--dg~~L~sgs~Dg~I~IwDl~t~~ 176 (811)
.......... .+..+++++.+|.|+.+|..+++.+..+......+.. ..-+| .+..++.++.+|.+..+|..+|+
T Consensus 149 ~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 149 AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence 3221111122 2456777888999999999999999888643111100 00112 23457778889999999999998
Q ss_pred EEEEEecCCC-------CeEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE-
Q 003556 177 LLHDFKCHEG-------QIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL- 246 (811)
Q Consensus 177 ~i~~~~~h~~-------~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs- 246 (811)
.+..+..... ....+..+| .+..++.++.+|.+..+|..+++.+...... ....+.. ++..|+++.
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~ 302 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQ 302 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcC
Confidence 8776542110 011111222 2456777788999999999999887654321 1112222 234444443
Q ss_pred CCCEEEEEecCCceeeeee-ccccceeEeeecCCCEEEEEECCCeEEEEEecCCCce
Q 003556 247 HESLKVFSWEPIRCHDAVD-VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~-~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
++.+..++..+++..-... ............ +..|..+..+|.|.+.|.+++++.
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 4456666665554322111 111111112223 455677889999999999888765
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.75 E-value=2.9e-07 Score=96.79 Aligned_cols=251 Identities=18% Similarity=0.314 Sum_probs=179.2
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEE
Q 003556 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL-EEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLK 126 (811)
Q Consensus 49 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl-~t~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 126 (811)
...+..++||.+.|++...-|...-+++.+.|.+++||-- +.++....+. ....+++++.+.+....|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 4455678899999999988888888999999999999954 3444433332 2356789999999999999999999999
Q ss_pred EEEC----CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003556 127 IWDI----RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 127 IwDl----~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Las 202 (811)
-+.+ +....++.+..|...+..+-|+-...++++.+.|..+.---.+.+..+..+.. ....+++.|.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 8855 34556677788999999999999899999999998765444444443332221 111112222111 4555
Q ss_pred EECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeee-eccccceeEeee-c
Q 003556 203 GSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-H 277 (811)
Q Consensus 203 gs~Dg~I~IwDl--~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~~~i~~l~~-~ 277 (811)
|...|.|..-.+ ....++..+.+|.+.+++++|.+..+.|++|..+ .+.+||+.-.+..... ..+...+..+.. .
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 656666555443 4466788899999999999999999999998777 6999998766554332 222233333322 3
Q ss_pred CCCEEEEEECCCeEEEEEecCCCce
Q 003556 278 EGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 278 dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
--+.|.+++.||.|.+|+++-.+..
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeec
Confidence 3478889999999999999987755
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=2.9e-07 Score=95.30 Aligned_cols=236 Identities=20% Similarity=0.339 Sum_probs=159.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc-----eEEEecCCC------------CCeEEEEEcCCCC--EEE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHT------------SGIDSVSFDSSEV--LVA 75 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~-----~~~~l~~h~------------~~V~~l~fspdg~--~La 75 (811)
....|+++.|.. .|.+|++|...|.|.+|.-.... .+..+++|. ..|..|.|..++. .++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345789999987 77899999999999999764332 223355554 3577888865433 556
Q ss_pred EEECCCeEEEEECCCCe-------------------------------------EE-----EEE-cCCCCCeEEEEEeCC
Q 003556 76 AGAASGTIKLWDLEEAK-------------------------------------IV-----RTL-TGHRSNCISVDFHPF 112 (811)
Q Consensus 76 sgs~DG~I~IWDl~t~~-------------------------------------~v-----~~l-~~h~~~I~sl~fspd 112 (811)
..+.|.+|++|.+.... .+ +.. ..|.-.|.++.|..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 66789999999874320 00 111 346667889999988
Q ss_pred CCEEEEEECCCcEEEEECCCCe---EEEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE------
Q 003556 113 GEFFASGSLDTNLKIWDIRKKG---CIHTYKGHT-----RGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKL------ 177 (811)
Q Consensus 113 g~~Lasgs~Dg~I~IwDl~~~~---~i~~~~~h~-----~~I~si~fspd-g~~L~sgs~Dg~I~IwDl~t~~~------ 177 (811)
.+.++++ .|=.|.+|++.-.. .+..++.|. .-|++..|+|. ...+...+..|.|++.|++...+
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888877 46779999986432 233344443 34888899994 45667778899999999985321
Q ss_pred EEE----------EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCC------------CCCe---e
Q 003556 178 LHD----------FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPE------------TSGV---R 231 (811)
Q Consensus 178 i~~----------~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~l~~~~~~------------~~~I---~ 231 (811)
+.. |..-...|..+.|+++|+++++-.. -+|+|||++.. .++.++.-| ...| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 111 1122346888999999999988765 58999999864 455555333 2233 3
Q ss_pred EEEEecCCCEEEEEECC-CEEEE
Q 003556 232 CLTFNPDGRTLLCGLHE-SLKVF 253 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vw 253 (811)
.+.|+.|.+.+.+|+.. ..-+|
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 46788888888888654 33444
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.72 E-value=2e-06 Score=93.67 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=138.8
Q ss_pred EeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEcCCCC
Q 003556 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-TIKLWDLEEAKIVRTLTGHRS 102 (811)
Q Consensus 24 fsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG-~I~IWDl~t~~~v~~l~~h~~ 102 (811)
|++-++.+++..+. |+..|.+...+-.+. -+|.+.|.-..+..+..-++.|..|| .+-|+|..+++..+. ...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCcc
Confidence 44445677777765 678887765444443 35777899999988888899999999 999999988876554 44678
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEE
Q 003556 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKLL 178 (811)
Q Consensus 103 ~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg----~I~IwDl~t~~~i 178 (811)
.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|+++|++.+--+| .|++||+..++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 899999999999999999999999999999987666566677899999999999999887776 5899999988765
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE
Q 003556 179 HDFKCHEGQIQCIDFHPHEFLLATGS 204 (811)
Q Consensus 179 ~~~~~h~~~V~sv~fspdg~~Lasgs 204 (811)
.... ..+.=.+-+|.|++++|.--+
T Consensus 483 ~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecC-CcccccCcccCCCCcEEEEEe
Confidence 5433 333345678999999877655
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.71 E-value=1.6e-07 Score=95.42 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=124.1
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceE------------EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI------------LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~------------~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (811)
|+.+.+. ....|+++..++.+..+....+.+. +.+..|+++-.+-+.+-.+..++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5566665 3456888888877776665443332 2333344333333334456679999999999999
Q ss_pred ECCCCeE-EEEEcC-CCCCeEEEEEeCCCCEEEEEEC-----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEE
Q 003556 87 DLEEAKI-VRTLTG-HRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD-GRWV 158 (811)
Q Consensus 87 Dl~t~~~-v~~l~~-h~~~I~sl~fspdg~~Lasgs~-----Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd-g~~L 158 (811)
+.+.-.. .+.+.. |.+ -.+.++...++++.++.. -+..++|+++..+.+..-+.....|.+++-+|. .+.+
T Consensus 117 s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 9765211 111111 111 122333344555554432 245677777654433222222334999999994 4567
Q ss_pred EEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCC
Q 003556 159 VSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~ 216 (811)
++|+.||.+.+||.++... ...++.|..+++.+.||| ++..|+++++||.+.-||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 7888999999999998743 334567999999999999 577999999999999999775
No 299
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.9e-05 Score=80.59 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=89.1
Q ss_pred EEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC
Q 003556 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 101 (811)
Q Consensus 22 lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~ 101 (811)
+...++...+++.|+..+.+.-.|..+|+.+.... -...|.+-+.- -|++++.|+..|.+++.+..+|.....+....
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34456678899999999999999999998876543 12344443332 47789999999999999999998777766333
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003556 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (811)
Q Consensus 102 ~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~ 140 (811)
.--......+++..+..|+.|++.+..|.++..++.+.+
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222233456779999999999999999999998887765
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=0.00011 Score=77.55 Aligned_cols=213 Identities=16% Similarity=0.112 Sum_probs=138.2
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe-CCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003556 63 DSVSFDS-SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (811)
Q Consensus 63 ~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~ 140 (811)
.++.|.+ ++.++++--..+.|..|+..+++...... .. ...+++. ++ ..|+.+...+ +.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 4678987 66666666678999999998886644222 22 6777888 55 5555555544 6666998886544433
Q ss_pred c-----CCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEE-EEECC
Q 003556 141 G-----HTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA-TGSAD 206 (811)
Q Consensus 141 ~-----h~~~I~si~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~La-sgs~D 206 (811)
. .....+.+++.|+|+..++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccccc
Confidence 2 33568899999999977765543 568888877 55444443 345578999999998765 55677
Q ss_pred CeEEEEECCC--C-----eEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeee--
Q 003556 207 RTVKFWDLET--F-----ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-- 276 (811)
Q Consensus 207 g~I~IwDl~~--~-----~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-- 276 (811)
+.|..|++.. . +.+..+....+..-.+++..+|++.++.... .|.+++-+ ++....+.......+.+.+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8899999853 2 1122233333347889999999877765543 57777766 6667777666555555555
Q ss_pred cCCCEEE
Q 003556 277 HEGKLLG 283 (811)
Q Consensus 277 ~dg~lLa 283 (811)
++.+.|.
T Consensus 235 ~~~~~L~ 241 (246)
T PF08450_consen 235 PDGKTLY 241 (246)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 3444443
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=3.3e-07 Score=98.35 Aligned_cols=158 Identities=19% Similarity=0.325 Sum_probs=113.1
Q ss_pred EEEEeeCCCcEEEEEECCCeEEEEECCCCc----eEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE
Q 003556 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPN----AILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKI 93 (811)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~I~VWdl~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~ 93 (811)
.+..++ +++++|.+..+....++++.... .+.... -...-+++.|..+...+..+..- ..+.+|....+.
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 344555 78889999888887777764332 222222 22233445555555555554444 455555555543
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl 172 (811)
...+-||-.-++.++|+||+++|+++..|..|++-....--.+..|. +|+..|..++..++ ..|++|+.|++|++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 34455899999999999999999999999999998877665565554 69999999999864 56899999999999999
Q ss_pred CCCeEEEEEe
Q 003556 173 TAGKLLHDFK 182 (811)
Q Consensus 173 ~t~~~i~~~~ 182 (811)
.+|+++.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999987765
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=3.9e-05 Score=81.95 Aligned_cols=223 Identities=15% Similarity=0.149 Sum_probs=156.0
Q ss_pred eEEEEEcC-CCCEEEEEECCCe-EEEEECCCCeEEEEEcCCCCCeE--EEEEeCCCCEEEEEEC-----CCcEEEEECC-
Q 003556 62 IDSVSFDS-SEVLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSNCI--SVDFHPFGEFFASGSL-----DTNLKIWDIR- 131 (811)
Q Consensus 62 V~~l~fsp-dg~~Lasgs~DG~-I~IWDl~t~~~v~~l~~h~~~I~--sl~fspdg~~Lasgs~-----Dg~I~IwDl~- 131 (811)
...++.+| ....++.+-.-|+ ..+||..+++....+....+.-. .-+|+++|++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34677888 5566777776664 67899999998877754333322 3679999999988643 5789999998
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEEec----CCCCeE
Q 003556 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG------------------EDNTVKLWDLTAGKLLHDFKC----HEGQIQ 189 (811)
Q Consensus 132 ~~~~i~~~~~h~~~I~si~fspdg~~L~sgs------------------~Dg~I~IwDl~t~~~i~~~~~----h~~~V~ 189 (811)
....+..+..|.-.-..+.+.|||+.|+++- .+..+.+.|..+|+++.+..- |.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 6778888888887788899999998888762 133566778888988887543 667899
Q ss_pred EEEEeCCCCEEEEEECCCe-------EEEEECCCCeEEEEe-------CCCCCCeeEEEEecCCCEEEEEECC--CEEEE
Q 003556 190 CIDFHPHEFLLATGSADRT-------VKFWDLETFELIGSA-------GPETSGVRCLTFNPDGRTLLCGLHE--SLKVF 253 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~-------I~IwDl~~~~~l~~~-------~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vw 253 (811)
.+++.++|..++..-..|. |-+++-.. .+..+ ....+.+-+|+++.+|.++++++-. .+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999977766654442 44444332 22222 2235778999999999999887765 48899
Q ss_pred EecCCceeeeeeccccceeEeeecCCCEEEEEECC
Q 003556 254 SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (811)
Q Consensus 254 d~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~D 288 (811)
|..+++........- ...+....+.++++++..
T Consensus 245 d~~tg~~~~~~~l~D--~cGva~~~~~f~~ssG~G 277 (305)
T PF07433_consen 245 DAATGRLLGSVPLPD--ACGVAPTDDGFLVSSGQG 277 (305)
T ss_pred ECCCCCEeeccccCc--eeeeeecCCceEEeCCCc
Confidence 888888776554332 224444444555554443
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2e-07 Score=97.94 Aligned_cols=159 Identities=15% Similarity=0.259 Sum_probs=123.6
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEE
Q 003556 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAI 149 (811)
Q Consensus 75 asgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~-----~~i~~~~~h~~~I~si 149 (811)
++.+.+..|-+-|+++|... .|. ..+.|.++.|...++.+..|+.+|.|..+|++.+ .+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 44455777888888877532 333 5678999999988999999999999999999864 3455555 88999999
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEE--EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003556 150 RFTP-DGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEGQIQC--IDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 150 ~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~~V~s--v~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~ 223 (811)
.... ++.+|++.+.+|.|++||++.-++ +.++.+|...-.- +..++.+..+++++.|...+||.++.+.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 788999999999999999998777 8888887654333 334556678888999999999999999999887
Q ss_pred CCCC----CCeeEEEEe
Q 003556 224 GPET----SGVRCLTFN 236 (811)
Q Consensus 224 ~~~~----~~I~sl~fs 236 (811)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 5432 235556554
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=7.2e-06 Score=83.87 Aligned_cols=222 Identities=14% Similarity=0.144 Sum_probs=143.7
Q ss_pred CCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCeEEE-EEcCCCCCeEEEEE
Q 003556 37 EDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDS-----SEVLVAAGAASGTIKLWDLEEAKIVR-TLTGHRSNCISVDF 109 (811)
Q Consensus 37 ~Dg~I~VWdl~t~~-~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~DG~I~IWDl~t~~~v~-~l~~h~~~I~sl~f 109 (811)
....+.+|++-+.. .+..+. ..+.|.| ...+|+.|+..|...+|...+.+... ....|...|.-+.=
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34457777774332 122221 2344443 45589999999999999998665432 22334333322111
Q ss_pred eCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEE-E-ecCC
Q 003556 110 HPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHD-F-KCHE 185 (811)
Q Consensus 110 spd-g~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~-~-~~h~ 185 (811)
..+ .-.+..++.|.++++.++..+..........-.+.++.+++|++|+++.+....|..|.+... +.+.. . ....
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 111 224667788888888888754433222212233789999999999999999999999988643 22222 2 2234
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EE----EeCCCCCCeeEEEEecCCC--EEEEE-ECCCEEEEEecC
Q 003556 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IG----SAGPETSGVRCLTFNPDGR--TLLCG-LHESLKVFSWEP 257 (811)
Q Consensus 186 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-l~----~~~~~~~~I~sl~fspdg~--~Lasg-s~d~I~Vwd~~~ 257 (811)
..-.+..|+.....+|++..||++.|||++.... .. +-..|.+.++.+.|++.|. +|+.. ....++|.|+..
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 4457888999999999999999999999987432 22 2245788999999998654 33333 333588999888
Q ss_pred Cceeeee
Q 003556 258 IRCHDAV 264 (811)
Q Consensus 258 ~~~~~~~ 264 (811)
.+.++.+
T Consensus 284 ~~~~q~I 290 (344)
T KOG4532|consen 284 YVNHQVI 290 (344)
T ss_pred CceeeEE
Confidence 7766654
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=1.5e-07 Score=106.70 Aligned_cols=206 Identities=24% Similarity=0.363 Sum_probs=149.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (811)
-+.+|+..|+.+-|+|+...++++++.|-.+..||+.... .+..+..-......++|+-....+.+.+....|.+||+.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 3678999999999999999999999999999999997654 444555444566889998765556666778889999998
Q ss_pred CC-eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCC--EEEEEECC
Q 003556 90 EA-KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPDGR--WVVSGGED 164 (811)
Q Consensus 90 t~-~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~~-~~h~~~I~si~fspdg~--~L~sgs~D 164 (811)
.| .++..+++|...|..++|.... ..+.+.+.||+|+.||..+....... .....+|.--+|.|-|. ++.-.-.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 65 5788899999999999997633 36889999999999998754322211 12345677777777433 22221112
Q ss_pred CeEEEEECCC----------CeEEEEEecCCCCeEEEEEeCC----------CCEEEEEECCCeEEEEECCC
Q 003556 165 NTVKLWDLTA----------GKLLHDFKCHEGQIQCIDFHPH----------EFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 165 g~I~IwDl~t----------~~~i~~~~~h~~~V~sv~fspd----------g~~Lasgs~Dg~I~IwDl~~ 216 (811)
..+.+++.++ .+.++.|.+|...|....|-.. ...|++-+.|.++++|-+.+
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2444444332 3578899999988776655432 34799999999999998753
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=6.6e-07 Score=96.09 Aligned_cols=161 Identities=18% Similarity=0.310 Sum_probs=117.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE---EEECCCC
Q 003556 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK---IWDIRKK 133 (811)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~----~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~---IwDl~~~ 133 (811)
.+..+..++.+++||++..+....++++.... .+.... -...-+++.|..+...+..+..-|.++ +|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455668889999999888887777765433 222222 233345566666666666655555554 4444444
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003556 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (811)
Q Consensus 134 ~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 212 (811)
.+ ..+-+|-..++.++|+||+++|+++..|..|++-....--.+..|. +|...|..++.-++. .|++|+.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 33 3445799999999999999999999999999998777666666655 599999999987764 58999999999999
Q ss_pred ECCCCeEEEEeC
Q 003556 213 DLETFELIGSAG 224 (811)
Q Consensus 213 Dl~~~~~l~~~~ 224 (811)
|+.+|+.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999886653
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=1.3e-06 Score=101.66 Aligned_cols=180 Identities=17% Similarity=0.275 Sum_probs=141.4
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~ 108 (811)
...++.|+-...+..+|+.+.+......-..+.|.-+. .+++++.+|...|+|.+-|..+.+.++++..|.+.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 34466677777788899988887776665555666555 4678999999999999999999999999999999998776
Q ss_pred EeCCCCEEEEEEC---------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE---CCCC
Q 003556 109 FHPFGEFFASGSL---------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWD---LTAG 175 (811)
Q Consensus 109 fspdg~~Lasgs~---------Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd-g~~L~sgs~Dg~I~IwD---l~t~ 175 (811)
.. |+.|++++. |.-|++||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.| +.+.
T Consensus 225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 65 899999875 446899999988777666655544 56778883 45788888999999999 4333
Q ss_pred -eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003556 176 -KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (811)
Q Consensus 176 -~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 213 (811)
.-+..+......+..++++++|..||.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22333444455699999999999999999999999997
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.9e-07 Score=98.16 Aligned_cols=169 Identities=21% Similarity=0.325 Sum_probs=125.0
Q ss_pred EEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----eEEEEE
Q 003556 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-----KIVRTL 97 (811)
Q Consensus 23 afsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~-----~~v~~l 97 (811)
+|+-+-.-+-++.+.+-.|-+-|+.++-.. .+. ..+.|.++.|.-.+.++..|+.+|.|..+|++.. .+...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 565422222244455566888888766432 233 5678999999999999999999999999999754 344444
Q ss_pred cCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCeEEE--EEcCCCCEEEEEECCCeEEEEE
Q 003556 98 TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTRGVNAI--RFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 98 ~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~---i~~~~~h~~~I~si--~fspdg~~L~sgs~Dg~I~IwD 171 (811)
. |...|+++..-. ++++|.+.+.+|.|++||++--++ +.++.+|-..-.-+ -..+....++++++|...+||.
T Consensus 296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 4 899999988776 678999999999999999997766 88999886543333 3345667889999999999999
Q ss_pred CCCCeEEEEEecCCC----CeEEEEEe
Q 003556 172 LTAGKLLHDFKCHEG----QIQCIDFH 194 (811)
Q Consensus 172 l~t~~~i~~~~~h~~----~V~sv~fs 194 (811)
++.|.++.++..... .+.+++|.
T Consensus 375 l~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccCceeeccCCCCccccccccceehh
Confidence 999999888764322 34455554
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4.1e-06 Score=96.73 Aligned_cols=181 Identities=25% Similarity=0.325 Sum_probs=137.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~ 139 (811)
..+.|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.|+++|+.||.|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456666664 678999999999999997543 2 333345443 567999999999999999999888877777
Q ss_pred ecCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003556 140 KGHTRGVNAIRFTPD-----GRWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (811)
Q Consensus 140 ~~h~~~I~si~fspd-----g~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 212 (811)
. ...++.+++++|+ .+.+++||..| +.++.-+ ..+....+....|+|.++.|. |.++|-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 6 5678999999997 56899999988 7776533 111122355567999999995 67999998887 9999
Q ss_pred ECCCCeEEEEeCCCCCCe------eEEEEecCCCEEEEEECCCEEEEEec
Q 003556 213 DLETFELIGSAGPETSGV------RCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 213 Dl~~~~~l~~~~~~~~~I------~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
|+...+.+..+......+ ..+.|.++ ..|+.|..++|+|....
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 999999888876554333 45677755 57788988999998887
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=2.2e-06 Score=99.73 Aligned_cols=180 Identities=22% Similarity=0.329 Sum_probs=141.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003556 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (811)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si 149 (811)
++..++.|+....+..+|+.+.+..+........|.-++. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456777888888999999999888877655555655554 47899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCC---
Q 003556 150 RFTPDGRWVVSGGE---------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLET--- 216 (811)
Q Consensus 150 ~fspdg~~L~sgs~---------Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~--- 216 (811)
.. .|+.|+++|. |..|++||++.-+.+.-+..+.++ .-+.|+|. -..+++++..|...+.|..+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 66 4889998876 456899999987777666655444 56788886 45788889999999999433
Q ss_pred C-eEEEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEE
Q 003556 217 F-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 254 (811)
Q Consensus 217 ~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd 254 (811)
. .-+..+.+....+..+.++++|+.|+.|..+ .|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 2234455566679999999999999999665 589997
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=5.5e-05 Score=88.07 Aligned_cols=267 Identities=11% Similarity=0.106 Sum_probs=157.7
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCCC------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS------GID--SVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS 102 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~ 102 (811)
.++.++.++.|+..|..+++.+..+..... .+. .+... ++..++.++.+|.|.-+|.++|+.+..+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 466677789999999999998887754322 010 11111 225777888999999999999999887764322
Q ss_pred C-----e-EEEEEeCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEecCCCC--------------------e-
Q 003556 103 N-----C-ISVDFHPFGEFFASGS---------LDTNLKIWDIRKKGCIHTYKGHTRG--------------------V- 146 (811)
Q Consensus 103 ~-----I-~sl~fspdg~~Lasgs---------~Dg~I~IwDl~~~~~i~~~~~h~~~--------------------I- 146 (811)
. + ....+. +..++.++ .+|.|+.+|..+++.+..+...... +
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 1 111222 34555554 3678999999999998887642110 1
Q ss_pred EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCeEEEEEecCCCCeE------EEEEe----CCCC
Q 003556 147 NAIRFTPDGRWVVSGGEDN------------------TVKLWDLTAGKLLHDFKCHEGQIQ------CIDFH----PHEF 198 (811)
Q Consensus 147 ~si~fspdg~~L~sgs~Dg------------------~I~IwDl~t~~~i~~~~~h~~~V~------sv~fs----pdg~ 198 (811)
...++.+.+..++.++.++ .|.-+|..+|+....+.......+ ...+. -+|.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234444566777777665 799999999999988763211111 11111 1333
Q ss_pred ---EEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEec--------------------------CCCEEEEEECCC
Q 003556 199 ---LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP--------------------------DGRTLLCGLHES 249 (811)
Q Consensus 199 ---~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fsp--------------------------dg~~Lasgs~d~ 249 (811)
.++.++.+|.++..|.++|+.+....... ..++.+| +|.+.+.-..++
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 67888899999999999999887653210 1112222 222222222222
Q ss_pred EEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 250 LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
-.+|..+..........+......-..-.+.+|.+++.||.|+.+|.+++++.-
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 334443322111000000111111112345778888899999999999988764
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=6.5e-07 Score=91.05 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=105.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEEC-----CC
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAA-----SG 81 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~-----DG 81 (811)
+++.+..|+++-.+-+.+- -++-+++++.||.+.+++.+.-..+. .+......-.+.++...++++.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 4444555555433333332 34458999999999999875421111 11111112222333445555555432 23
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCEE
Q 003556 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTP-DGRWV 158 (811)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~~~-i~~~~~h~~~I~si~fsp-dg~~L 158 (811)
..+.|+++..+....-......|.+++-+|..+ .+++|+.||.+-+||.++... ...++.|+.+|+.+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 455666654332222122233489999999655 677888999999999997643 445678999999999999 67899
Q ss_pred EEEECCCeEEEEECCC
Q 003556 159 VSGGEDNTVKLWDLTA 174 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t 174 (811)
+++++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999764
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.2e-06 Score=89.88 Aligned_cols=246 Identities=12% Similarity=0.114 Sum_probs=153.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKL 85 (811)
Q Consensus 7 ~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~I 85 (811)
..++-+.+|...|..++|+|....++..++.+.+|+|.|+.+...+..+..| ..+++++|.-+ .++|++|...|.|.+
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 3455677889999999999977668999999999999999999999988888 88999999765 458888999999999
Q ss_pred EECCCCe-EEEEEcC--CCCCeEEEEE------eCCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEEc
Q 003556 86 WDLEEAK-IVRTLTG--HRSNCISVDF------HPFGEFFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFT 152 (811)
Q Consensus 86 WDl~t~~-~v~~l~~--h~~~I~sl~f------spdg~~Lasgs~Dg~I~IwDl~~----~~~i~~~~~h~~~I~si~fs 152 (811)
||++..+ .+..+.+ ...+|..++. .+.|.+++..+.+ +..|.+.- ..++..+. ..+.+.+++++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeec
Confidence 9997643 2222221 1223333332 3344455544432 55665532 12222222 24456666666
Q ss_pred CCCCEEEEEECCC-------eE-EEEECCCCeEEEEEe-cC-CCCe-----EEEEE-eCCCCEE-EEEECCCeEEEEECC
Q 003556 153 PDGRWVVSGGEDN-------TV-KLWDLTAGKLLHDFK-CH-EGQI-----QCIDF-HPHEFLL-ATGSADRTVKFWDLE 215 (811)
Q Consensus 153 pdg~~L~sgs~Dg-------~I-~IwDl~t~~~i~~~~-~h-~~~V-----~sv~f-spdg~~L-asgs~Dg~I~IwDl~ 215 (811)
+-.+.++...... .| ---|.++|..+...+ .+ .+.- ....+ .++.+++ ..|...+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 6445554443220 01 112223333332221 11 1110 11112 2233443 445566789999999
Q ss_pred CCeEEEEeCCCCCCeeEEEEec--CCCEEEEEECCCEEEEEecC
Q 003556 216 TFELIGSAGPETSGVRCLTFNP--DGRTLLCGLHESLKVFSWEP 257 (811)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fsp--dg~~Lasgs~d~I~Vwd~~~ 257 (811)
+++.++.+... .+|.+++... .+.||++-.++.++||.|+.
T Consensus 420 s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 420 SFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred hhheeeecccC-cceeecceeecCCcchhhheecceEEEEecCC
Confidence 99999888665 7788876554 25688888899999998864
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=3.3e-06 Score=97.51 Aligned_cols=181 Identities=13% Similarity=0.212 Sum_probs=135.5
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD 180 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~ 180 (811)
...++|++++ +.+|+.|+.+|.|++++.... . .+...|... .-+|.++++++.||.|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777777 789999999999999997643 2 344445443 56899999999999999999988887777
Q ss_pred EecCCCCeEEEEEeCC-----CCEEEEEECCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEE
Q 003556 181 FKCHEGQIQCIDFHPH-----EFLLATGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKV 252 (811)
Q Consensus 181 ~~~h~~~V~sv~fspd-----g~~Lasgs~Dg~I~IwDl~~---~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~V 252 (811)
+. ...++.+++++|+ .+.+++|+.-| +.++.-+- ...+ ......++|.++.|. |.+||.+.+.+++|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 76 4578999999998 56889999888 77776432 1222 345567899999996 77999999999999
Q ss_pred EEecCCceeeeeeccccc------eeEeeecCCCEEEEEECCCeEEEEEec
Q 003556 253 FSWEPIRCHDAVDVGWSR------LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 253 wd~~~~~~~~~~~~~~~~------i~~l~~~dg~lLasg~~Dg~V~IWdvd 297 (811)
||....+....+.-.... -..+.|.+...|+.|+.| +|+|..+.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 999887665443222111 123556778888888888 78888777
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=6e-05 Score=78.42 Aligned_cols=196 Identities=14% Similarity=0.196 Sum_probs=118.9
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCC------CEEEEEECCCeEEE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSE------VLVAAGAASGTIKL 85 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~-------h~~~V~~l~fspdg------~~Lasgs~DG~I~I 85 (811)
=.-++|+| ++.+||.+...|+|++||+.. ..+..+.. -...|..+.|.+.. ..|++-...|.++-
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45689999 778999999999999999864 44444432 23567777775422 14556677888888
Q ss_pred EECCC-----CeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003556 86 WDLEE-----AKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 86 WDl~t-----~~~v~~l~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
|-+.. .+....+. .+...|.++.|+|..++|++|+.... +.+. .+.....+++-....+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 87632 22333332 24678999999999888887764322 0000 0011222222222211111
Q ss_pred --EEEEECCCe------EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003556 158 --VVSGGEDNT------VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (811)
Q Consensus 158 --L~sgs~Dg~------I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~ 226 (811)
.+....|+. ..+|.+-+.+...........|..|..+|||.+||+.+.+|.|.+|++....+......+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 111222211 123333322222222234677999999999999999999999999999988777766544
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=0.00018 Score=86.79 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=136.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC----CCeE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR----KKGC 135 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~----~~~~ 135 (811)
..|.++.|..+...++.+...|.|.+-|.++..... ...-...|.+++|+||++.++..+..+++.+-+-. ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999999999999999988765322 22245789999999999999998888877765420 0000
Q ss_pred E-------------------EEEec---------------------CCCCeEEEEEcCCCCEEEEEE----CC-CeEEEE
Q 003556 136 I-------------------HTYKG---------------------HTRGVNAIRFTPDGRWVVSGG----ED-NTVKLW 170 (811)
Q Consensus 136 i-------------------~~~~~---------------------h~~~I~si~fspdg~~L~sgs----~D-g~I~Iw 170 (811)
+ ..|.+ ..+.=+.|.|-.||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 11111 011224589999999998743 23 689999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEecCCCEEEE
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs---~Dg~I~IwDl~~---~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (811)
|.. |.+-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-+. +.....+......+..++|+.++..|++
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 976 544433333344557899999999998864 456799987543 2222223333445899999999999997
Q ss_pred ---EECCC-EEEEEecCCc
Q 003556 245 ---GLHES-LKVFSWEPIR 259 (811)
Q Consensus 245 ---gs~d~-I~Vwd~~~~~ 259 (811)
...+. +++|......
T Consensus 307 ~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecccccceEEEEEecCeE
Confidence 34444 8898876643
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.38 E-value=0.00031 Score=73.21 Aligned_cols=233 Identities=16% Similarity=0.262 Sum_probs=136.1
Q ss_pred EEEeeCCCcEEEEEECCCeEEEEECCCC--ceEEEecCC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGH---TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (811)
Q Consensus 22 lafsp~~~~lLatgs~Dg~I~VWdl~t~--~~~~~l~~h---~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (811)
++.+. +|++||.- .|..|.|=...+. ..+...... .-.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 45555 66666655 4566777654321 222222222 2234679999999999999999999999987533 333
Q ss_pred EcC-------CCCCeEEEEEeCCC------CEEEEEECCCcEEEEECCC-----CeEEEEEe--c-CCCCeEEEEEcCCC
Q 003556 97 LTG-------HRSNCISVDFHPFG------EFFASGSLDTNLKIWDIRK-----KGCIHTYK--G-HTRGVNAIRFTPDG 155 (811)
Q Consensus 97 l~~-------h~~~I~sl~fspdg------~~Lasgs~Dg~I~IwDl~~-----~~~i~~~~--~-h~~~I~si~fspdg 155 (811)
+.. ....|..+.|.+.. ..|++-..+|.++-|-+.. .+..+.+. . +...|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 332 22456777776532 2466677888888776532 22333332 2 46789999999998
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE--EEEEECCC------eEEEEECCCCeEEEEeCCCC
Q 003556 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL--LATGSADR------TVKFWDLETFELIGSAGPET 227 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~--Lasgs~Dg------~I~IwDl~~~~~l~~~~~~~ 227 (811)
+.|++||.... ..+. .+.....+++-..-.+..+ .++...|+ +..+|.+-+.+.........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 88888775432 0000 0011122222222111111 11122121 12344444444433334457
Q ss_pred CCeeEEEEecCCCEEEEEEC-CCEEEEEecCCceeeeeecc
Q 003556 228 SGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVG 267 (811)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~ 267 (811)
..|..|..||||..|++..- +.|.+|++...+....+...
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 78999999999999998754 56999999988776655433
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=1.5e-07 Score=108.19 Aligned_cols=201 Identities=18% Similarity=0.305 Sum_probs=152.3
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEE
Q 003556 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKI 127 (811)
Q Consensus 50 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg--~I~I 127 (811)
+....+..|+...+|++|+.+.++|+.|+..|.|++|++.+|.......+|...|+.+.-+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44556777889999999999999999999999999999999999999999999999999999998766654433 5678
Q ss_pred EECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ec---CCCCeEEEEEeCCCCEEEE
Q 003556 128 WDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KC---HEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 128 wDl~~-~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~---h~~~V~sv~fspdg~~Las 202 (811)
|++.. +...++|. .-.++.|+..-..-+.|+......+||+.++..+.++ .+ ....-++..|+|+..+++-
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 99863 44455554 2457888875445566666677899999998776653 21 2233478899999887764
Q ss_pred EECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeee
Q 003556 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (811)
|| .+||++..+.++.+...... -.-.|+|.|.-++..+ .|||+.+.+.+..+
T Consensus 1248 ---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred ---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 55 47999988877776554422 2336999999988765 68998887665443
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.6e-05 Score=80.90 Aligned_cols=252 Identities=13% Similarity=0.113 Sum_probs=148.2
Q ss_pred EEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEE
Q 003556 41 VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFAS 118 (811)
Q Consensus 41 I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~-~Las 118 (811)
+++.+-.+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+++++|.-+.. +|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444555667888999999999877 7888999999999999999999999877 7899999998765 6888
Q ss_pred EECCCcEEEEECCCCeE-EEEEec--CCCCeEEEEEc------CCCCEEEEEECCCeEEEEECCC--C--eEEEEEecCC
Q 003556 119 GSLDTNLKIWDIRKKGC-IHTYKG--HTRGVNAIRFT------PDGRWVVSGGEDNTVKLWDLTA--G--KLLHDFKCHE 185 (811)
Q Consensus 119 gs~Dg~I~IwDl~~~~~-i~~~~~--h~~~I~si~fs------pdg~~L~sgs~Dg~I~IwDl~t--~--~~i~~~~~h~ 185 (811)
|...|.|++||++..+- +..+.+ ...+|..++.- +.|.+|+....+ +..|.+.. + -++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 88999999999986542 222221 22344444432 234444444333 24454432 1 1222222 24
Q ss_pred CCeEEEEEeCCCCE-EEEEECCC------eEE-EEECCCCeEEEEeC-CC-CCC------eeEEEEecCCCEEEEEECC-
Q 003556 186 GQIQCIDFHPHEFL-LATGSADR------TVK-FWDLETFELIGSAG-PE-TSG------VRCLTFNPDGRTLLCGLHE- 248 (811)
Q Consensus 186 ~~V~sv~fspdg~~-Lasgs~Dg------~I~-IwDl~~~~~l~~~~-~~-~~~------I~sl~fspdg~~Lasgs~d- 248 (811)
+...++.+++-.+. |++.-.+. .|- --|..+|.++...+ .+ ++. -..+.-.++..+|+.-.++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 55666777664443 33333221 011 12233344333221 11 111 0112224566666644333
Q ss_pred -CEEEEEecCCceeeeeeccccceeEeeec--CCCEEEEEECCCeEEEEEec
Q 003556 249 -SLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 249 -~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~--dg~lLasg~~Dg~V~IWdvd 297 (811)
.+.+||.........+... .++.++... ++.-+...-.|..++|+..+
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 5899998888777766665 566666652 33333444566688887654
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=6.9e-05 Score=87.43 Aligned_cols=220 Identities=13% Similarity=0.156 Sum_probs=144.4
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASG-----TIKLWDLEEA 91 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~DG-----~I~IWDl~t~ 91 (811)
.|+| |++ ++..+|.|+.+|.|.+++- ..+.+..++.+... |..+....+..+|++.+.|+ .|++||++.-
T Consensus 27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4554 445 5667999999999888873 34555778887777 44444444556777777665 4899998642
Q ss_pred ------eEEE--EEcC-----CCCCeEEEEEeCCCCEEEEEECCCcEEEEEC--CC--CeEEEEEecCCCCeEEEEEcCC
Q 003556 92 ------KIVR--TLTG-----HRSNCISVDFHPFGEFFASGSLDTNLKIWDI--RK--KGCIHTYKGHTRGVNAIRFTPD 154 (811)
Q Consensus 92 ------~~v~--~l~~-----h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl--~~--~~~i~~~~~h~~~I~si~fspd 154 (811)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.= -. +....-......+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1212 3457889999999889999999999998842 11 1111112234578999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeE
Q 003556 155 GRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRC 232 (811)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~-~~~~~I~s 232 (811)
+..++-+..-..|.+|.+..... ...+..|+..+.|..|++...-+++++ +..|.+||.....+-..+. ++.. -
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk---~ 258 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK---E 258 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE---E
Confidence 88744444566788999884442 444666788899999988665455554 3469999998766666665 4432 2
Q ss_pred EEEecCCCEEEEE
Q 003556 233 LTFNPDGRTLLCG 245 (811)
Q Consensus 233 l~fspdg~~Lasg 245 (811)
+-|...|.+|++.
T Consensus 259 ~~~~~~g~~L~v~ 271 (933)
T KOG2114|consen 259 MLVFSFGLLLCVT 271 (933)
T ss_pred EEEEecCEEEEEE
Confidence 2233335555543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=8.9e-05 Score=86.56 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=137.2
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCC-----cEEEEECCCC------
Q 003556 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDT-----NLKIWDIRKK------ 133 (811)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg-~~Lasgs~Dg-----~I~IwDl~~~------ 133 (811)
+|++.+..++.|+.+|.|.+.+ ...+.++.+..+...+...-|.-++ .+|++.+.|+ .|++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4568888999999999998887 3345557777777763333344344 5777776654 5899998642
Q ss_pred eEE--EEEec-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---C-CeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003556 134 GCI--HTYKG-----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT---A-GKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 134 ~~i--~~~~~-----h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~---t-~~~i~~~~~h~~~V~sv~fspdg~~Las 202 (811)
.++ ..+.. ...++.+++.+.+-+.+|+|-.+|.|.++.-. . |...........+|+.+.|..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 12222 24578899999999999999999999988532 1 1112222235678999999999887433
Q ss_pred EECCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeee
Q 003556 203 GSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 265 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~-l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (811)
......|.+|.+....+ ......++..+.|.+|++...-++++....+.+|+.+.......+.
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 34456799999985442 4447788889999999976665777778888998887544433333
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00031 Score=81.56 Aligned_cols=260 Identities=10% Similarity=0.063 Sum_probs=161.8
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCC-------------CCeE-------EEEE-------------cCCCCEEEEE
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-------------SGID-------SVSF-------------DSSEVLVAAG 77 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~-------------~~V~-------~l~f-------------spdg~~Lasg 77 (811)
.|.+|+..|.|+|+-+.+...++.+...+ ..|. .+.| ..||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 47888999999999998888777653110 0011 1122 1256777776
Q ss_pred EC-CCeEEEEECCCCeEEEEEcC-CCCCeEEEEE-------------------eCCCCEEEE-EECCCcEEEEECCCCeE
Q 003556 78 AA-SGTIKLWDLEEAKIVRTLTG-HRSNCISVDF-------------------HPFGEFFAS-GSLDTNLKIWDIRKKGC 135 (811)
Q Consensus 78 s~-DG~I~IWDl~t~~~v~~l~~-h~~~I~sl~f-------------------spdg~~Las-gs~Dg~I~IwDl~~~~~ 135 (811)
.. +..|...++...++-+.+.- ....+..+.| .|+|+.+.. .-..+.+.++|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 55666677665544333221 1122222333 344443322 22345677778888777
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 136 i~~~~~h~~~I~si~fspdg~~L~sgs~D----g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
..++.-- .....+.++|+|+++++.+.+ +.+...+..+...+..|.... + -.+.++|++...+ ++.|.+
T Consensus 228 ~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--gn~V~V 300 (635)
T PRK02888 228 AWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG--GSKVPV 300 (635)
T ss_pred EEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--CCEEEE
Confidence 7776643 345678999999999888632 223333332222222222100 0 1334577766663 678999
Q ss_pred EECCC-----CeEEEEeCCCCCCeeEEEEecCCCEEEEEEC--CCEEEEEecCCce------------eeeeecccccee
Q 003556 212 WDLET-----FELIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEPIRC------------HDAVDVGWSRLS 272 (811)
Q Consensus 212 wDl~~-----~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~------------~~~~~~~~~~i~ 272 (811)
+|..+ .+.+..+. -......+.++|||+++++++. +.+.|+|+...+. ...+.++-.++.
T Consensus 301 ID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH 379 (635)
T PRK02888 301 VDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH 379 (635)
T ss_pred EECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce
Confidence 99998 34444443 3455688999999999998754 4699999987553 455677778877
Q ss_pred EeeecCCCEEEEEECCCeEEEEEecC
Q 003556 273 DLNVHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 273 ~l~~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
..+..+|....+-+-|..|-.|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 77777888888999999999999987
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00024 Score=85.83 Aligned_cols=216 Identities=13% Similarity=0.202 Sum_probs=141.2
Q ss_pred CCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC----CC--
Q 003556 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL----EE-- 90 (811)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl----~t-- 90 (811)
+.|.++.|.- +..-++.+..+|.|.+-|..+.... ....-..+|.+++|+||+..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4788999987 5556778888899999987654332 22234579999999999999999888887765432 10
Q ss_pred -----------------CeEEEEEcCC---------------------CCCeEEEEEeCCCCEEEEEE-----CCCcEEE
Q 003556 91 -----------------AKIVRTLTGH---------------------RSNCISVDFHPFGEFFASGS-----LDTNLKI 127 (811)
Q Consensus 91 -----------------~~~v~~l~~h---------------------~~~I~sl~fspdg~~Lasgs-----~Dg~I~I 127 (811)
|+.-..+.|. .+.=..|+|--||++||+.. ....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0100112211 11123589999999999832 2378999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEE----EecCCCCeEEEEEeCCCCEE
Q 003556 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTAGKLLHD----FKCHEGQIQCIDFHPHEFLL 200 (811)
Q Consensus 128 wDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs---~Dg~I~IwDl~t~~~i~~----~~~h~~~V~sv~fspdg~~L 200 (811)
||-+ +..-..-....+.-.+++|-|.|.++++-. .|+.|.+|.- +|-.-.. +......+..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence 9976 443333333334456899999999988764 4567888873 3433222 22234458999999999999
Q ss_pred EE---EECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEecC
Q 003556 201 AT---GSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPD 238 (811)
Q Consensus 201 as---gs~Dg~I~IwDl~~~~~--l~~~~~~~~~I~sl~fspd 238 (811)
|+ ......|++|-+.+..- ...+....... +.|+|-
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 98 55555699999887542 22333222222 788884
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.00073 Score=78.52 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=131.8
Q ss_pred EcCCCCEEEE-EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC----cEEEEECCCCeEEEEEec
Q 003556 67 FDSSEVLVAA-GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGCIHTYKG 141 (811)
Q Consensus 67 fspdg~~Las-gs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg----~I~IwDl~~~~~i~~~~~ 141 (811)
+.+||+.+.. .-..+.+.++|.++.+...++... .....++++++|+++++.+.+. ++...+......+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3456654432 223467788888888777776532 3446788999999988886432 233333322222222211
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC
Q 003556 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-----GKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE 215 (811)
Q Consensus 142 h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t-----~~~i~~~~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~ 215 (811)
.. + -++.++|++... .++.|.++|.++ .+.+..+. -......+.++|||+++++++ .+.+|.++|+.
T Consensus 279 ~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 00 0 133457887766 367899999998 34555554 455678999999999877766 48899999998
Q ss_pred CCeE------------EEEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecC----------Cceeeeeecccccee
Q 003556 216 TFEL------------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP----------IRCHDAVDVGWSRLS 272 (811)
Q Consensus 216 ~~~~------------l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~----------~~~~~~~~~~~~~i~ 272 (811)
+.+. +..... .......+|.++|....+-.-+ .+..|+++. ....+.+++++.+-.
T Consensus 352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh 430 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH 430 (635)
T ss_pred hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce
Confidence 8653 333333 3344677899999766555544 688899876 334555667766544
Q ss_pred Eee------ecCCCEEEEE
Q 003556 273 DLN------VHEGKLLGCS 285 (811)
Q Consensus 273 ~l~------~~dg~lLasg 285 (811)
... -++|++|++.
T Consensus 431 ~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 431 NHASMGETKEADGKWLVSL 449 (635)
T ss_pred eeecCCCcCCCCCCEEEEc
Confidence 443 3677877764
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.0024 Score=65.66 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=101.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003556 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (811)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si 149 (811)
...+++.|+..+.+.-.|..+|+.+..-. -...|.+-+.- -|++++.|+..|.+++.+..+|..++.+.....--...
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 35688889999999999999998775533 22233332222 47899999999999999999998888776433322234
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003556 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (811)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (811)
...+++..+..|+.|+..+..|.++..++...+...+...+-+..|-...|..+...|.|.--..+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 566789999999999999999999999999888655555555666633334444444544433333
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.00085 Score=75.61 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=138.5
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce-------------------------------------------EEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-------------------------------------------ILS 54 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~-------------------------------------------~~~ 54 (811)
.|+.+.|+++ ..-|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999984 45689999999999997632111 011
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--C------CCCCeEEEEEeC-----CC---CEEEE
Q 003556 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--G------HRSNCISVDFHP-----FG---EFFAS 118 (811)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~--~------h~~~I~sl~fsp-----dg---~~Las 118 (811)
+....++|++++.+ +--+++.|..+|.+.|.|++....+..-. . ....++++.|.- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 22346789999987 45599999999999999998888776632 1 234678888863 22 36899
Q ss_pred EECCCcEEEEECC--C-CeE----EEEEecCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEE
Q 003556 119 GSLDTNLKIWDIR--K-KGC----IHTYKGHTRGVNAIR-FTPD-G-------------------RWVVSGGEDNTVKLW 170 (811)
Q Consensus 119 gs~Dg~I~IwDl~--~-~~~----i~~~~~h~~~I~si~-fspd-g-------------------~~L~sgs~Dg~I~Iw 170 (811)
|+..|.+.+|.+- . +.. ......+.++|..|. |..+ | +.++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 211 111224556666555 3221 1 234555568889999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEe-----CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC----CCeeEEEEecCCCE
Q 003556 171 DLTAGKLLHDFKCHEGQIQCIDFH-----PHEFLLATGSADRTVKFWDLETFELIGSAGPET----SGVRCLTFNPDGRT 241 (811)
Q Consensus 171 Dl~t~~~i~~~~~h~~~V~sv~fs-----pdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~----~~I~sl~fspdg~~ 241 (811)
..-+.+..+...........+.+- ..+..|++-..+|.|++|.+...+.+....... ..+....|+++|..
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 998887766655222233344552 357788999999999999999998887765432 23456778999998
Q ss_pred EEEEECCCEEEEE
Q 003556 242 LLCGLHESLKVFS 254 (811)
Q Consensus 242 Lasgs~d~I~Vwd 254 (811)
++..+...+.++.
T Consensus 321 ~~~~gpsE~~l~s 333 (395)
T PF08596_consen 321 FYWTGPSEIQLFS 333 (395)
T ss_dssp EEE-SSSEEEEEE
T ss_pred EEEeCcccEEEEE
Confidence 8766555444443
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=6.1e-05 Score=87.09 Aligned_cols=189 Identities=12% Similarity=0.154 Sum_probs=124.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEE----CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003556 16 SSTVNCLKIGRKSSRVLVTGG----EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs----~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (811)
.+.-+-..|+| ...++++++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 33344567999 677788775 358898885 4555433222 1123456999999999999999999999998887
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCC--C--CeEEEEEcCCCC------EEE
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHT--R--GVNAIRFTPDGR------WVV 159 (811)
Q Consensus 92 ~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~--~h~--~--~I~si~fspdg~------~L~ 159 (811)
+.......|..+|..+.|+++|..++++..-|.|.+|....-..++... .|. . ...|...++++. ..+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaa 171 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAA 171 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhh
Confidence 7777777899999999999999999999999999999876333332221 122 2 244555666642 223
Q ss_pred EEECCCeEE-EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003556 160 SGGEDNTVK-LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (811)
Q Consensus 160 sgs~Dg~I~-IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (811)
+.+++..+- .++.+......... +. =.|+|..++.++.+|+|+..|-.
T Consensus 172 VtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 172 VTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred ccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCC
Confidence 334443332 33333111111111 11 13678888889999999988844
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.09 E-value=1.2e-05 Score=58.90 Aligned_cols=39 Identities=46% Similarity=0.833 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003556 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (811)
Q Consensus 91 ~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwD 129 (811)
++++.++.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.08 E-value=1.3e-05 Score=58.70 Aligned_cols=39 Identities=38% Similarity=0.786 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003556 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (811)
Q Consensus 175 ~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 213 (811)
++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0018 Score=68.22 Aligned_cols=200 Identities=9% Similarity=0.177 Sum_probs=121.3
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (811)
+.+.+-...+..++|.|+++.++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4566666789999999988889999999999998886 47887776543 356889999888888877667899999998
Q ss_pred CCCe------EEEEEc-----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---CeEEEEE--------ecCCCCe
Q 003556 89 EEAK------IVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCIHTY--------KGHTRGV 146 (811)
Q Consensus 89 ~t~~------~v~~l~-----~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~---~~~i~~~--------~~h~~~I 146 (811)
.... ....+. .+...+-.++|.+.++.|+.+-...-..+|.+.. ...+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 112221 2445689999999888777777766666666543 2222111 1133458
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003556 147 NAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFW 212 (811)
Q Consensus 147 ~si~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~---------~~V~sv~fspdg~~Lasgs~Dg~I~Iw 212 (811)
.++.++|. |++++.......|..+| .+|+.+..+.-.. .+.-.|+|.++|.+.++ ++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 89999995 45666666778899999 6777766665322 25678999999865554 455555544
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-05 Score=84.83 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=144.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCC
Q 003556 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKK 133 (811)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t---~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-Dg~I~IwDl~~~ 133 (811)
|.+.|+.+.. ...+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++-.+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 6666666543 4567899999999999998543 2455666788899999999999999999777 999999999876
Q ss_pred eEEEEEecCCCCeEEEEEcCCC--C-EE-EEEECCCeEEEEECCCCe-EEEEE-ecCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 134 GCIHTYKGHTRGVNAIRFTPDG--R-WV-VSGGEDNTVKLWDLTAGK-LLHDF-KCHEGQIQCIDFHPHEFLLATGSADR 207 (811)
Q Consensus 134 ~~i~~~~~h~~~I~si~fspdg--~-~L-~sgs~Dg~I~IwDl~t~~-~i~~~-~~h~~~V~sv~fspdg~~Lasgs~Dg 207 (811)
..+..++...-+=.+-.+...| . .+ ++.-.+|.+.++|-...- ....+ .-|..+|.++.+.+-+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 6554443222111111122223 1 23 333467899999987543 22223 35889999999999999999999999
Q ss_pred eEEEEECCC-Ce-----EE---------EEeCCCCCCeeEEEEecCCCEEEEEECC-CEEEEEecCCceee
Q 003556 208 TVKFWDLET-FE-----LI---------GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 262 (811)
Q Consensus 208 ~I~IwDl~~-~~-----~l---------~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~ 262 (811)
.|.-|..+. .+ .. ..+........++.|+|+|..+.+-..+ .++++.+.+++..+
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999998872 11 11 1122234567899999999999876665 69999988776543
No 332
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.0084 Score=70.43 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=120.8
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCC-CCeE---E-------EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGID---S-------VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (811)
.+++++.++.|+-.|..+++.+..+.... ..+. + +++ .+..++.++.++.|.-.|..+|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 56667778899999999999988775321 1111 1 122 234577788899999999999998876642
Q ss_pred CCCC-eEEEEEeC--CCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCC--------------------------
Q 003556 100 HRSN-CISVDFHP--FGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTR-------------------------- 144 (811)
Q Consensus 100 h~~~-I~sl~fsp--dg~~Lasgs~------Dg~I~IwDl~~~~~i~~~~~h~~-------------------------- 144 (811)
.... -..+.-.| .+..++++.. +|.|..+|.++++.+..+..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1110 00111111 1345555542 68999999999998877643111
Q ss_pred -----Ce-EEEEEcCCCCEEEEEEC-----CC-----------eEEEEECCCCeEEEEEecCCCCeE---------EEEE
Q 003556 145 -----GV-NAIRFTPDGRWVVSGGE-----DN-----------TVKLWDLTAGKLLHDFKCHEGQIQ---------CIDF 193 (811)
Q Consensus 145 -----~I-~si~fspdg~~L~sgs~-----Dg-----------~I~IwDl~t~~~i~~~~~h~~~V~---------sv~f 193 (811)
.+ ..+.+.|....++.+.. ++ .|.-.|+++|+....|+.....++ -+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 01 13456665566665542 12 677889999999888875322222 2223
Q ss_pred eCCCC---EEEEEECCCeEEEEECCCCeEE
Q 003556 194 HPHEF---LLATGSADRTVKFWDLETFELI 220 (811)
Q Consensus 194 spdg~---~Lasgs~Dg~I~IwDl~~~~~l 220 (811)
..+|+ .++.+..+|.+++.|-++++++
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 34665 8889999999999999999986
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0039 Score=72.76 Aligned_cols=229 Identities=15% Similarity=0.197 Sum_probs=141.5
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEecCCCCC-----eE-EEEEcCCCCEEEEEE---------CCCeEEEEECCCCeEE
Q 003556 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-----ID-SVSFDSSEVLVAAGA---------ASGTIKLWDLEEAKIV 94 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~-----V~-~l~fspdg~~Lasgs---------~DG~I~IWDl~t~~~v 94 (811)
..++.++.+|.|+.+|..+++.+..+...... +. ...+. +..++.++ .+|.|..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 45777888999999999999999887643221 11 11121 23455553 3688999999999988
Q ss_pred EEEcCCCCC--------------------e-EEEEEeCCCCEEEEEECCC------------------cEEEEECCCCeE
Q 003556 95 RTLTGHRSN--------------------C-ISVDFHPFGEFFASGSLDT------------------NLKIWDIRKKGC 135 (811)
Q Consensus 95 ~~l~~h~~~--------------------I-~sl~fspdg~~Lasgs~Dg------------------~I~IwDl~~~~~ 135 (811)
..+...... + ....+.+.+..++.++.++ .|..+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776532110 1 1234444567788887665 799999999999
Q ss_pred EEEEecCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003556 136 IHTYKGHTRGVN------AIRFT----PDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (811)
Q Consensus 136 i~~~~~h~~~I~------si~fs----pdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Las 202 (811)
+..++.-..... ...+. -+|. .++.++.+|.+..+|..+|+.+....... ..+...| + .++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~-~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-G-LVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-c-eEEE
Confidence 988753111111 01111 1333 57788889999999999999988765321 1233344 2 2322
Q ss_pred E------------------ECCCeEEEEECCCCeEEEEeCCCC--------CCe--eEEEEecCCCEEEEEECC-CEEEE
Q 003556 203 G------------------SADRTVKFWDLETFELIGSAGPET--------SGV--RCLTFNPDGRTLLCGLHE-SLKVF 253 (811)
Q Consensus 203 g------------------s~Dg~I~IwDl~~~~~l~~~~~~~--------~~I--~sl~fspdg~~Lasgs~d-~I~Vw 253 (811)
+ ..+|.|.-.|+.+++.+-...... .+. ..+.. .+..|++++.+ .+..+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEE
Confidence 2 246789999999998877654331 111 11222 45577776554 57777
Q ss_pred EecCCceeeeeecc
Q 003556 254 SWEPIRCHDAVDVG 267 (811)
Q Consensus 254 d~~~~~~~~~~~~~ 267 (811)
|.++++..-..+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 77777666555443
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.93 E-value=0.0074 Score=64.55 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=134.2
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE--------
Q 003556 69 SSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-------- 139 (811)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~-------- 139 (811)
..++.|+.|+.+| |.++++.. .+..... +...|..+...++-+.+++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4677899999888 99999833 3333333 233499999998877766664 599999998754433311
Q ss_pred ------ecCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003556 140 ------KGHTRGVNAIR--FTPDGRWVVSGGEDNTVKLWDLTAG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (811)
Q Consensus 140 ------~~h~~~I~si~--fspdg~~L~sgs~Dg~I~IwDl~t~-----~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D 206 (811)
......+..++ -...+...+.......|.+|..... +...++. -...+..++|. +..|+.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11223444444 1123333444445558888877653 4556665 35778999998 5578887755
Q ss_pred CeEEEEECCCCeEEEEeCCCC------------CCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEe
Q 003556 207 RTVKFWDLETFELIGSAGPET------------SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 274 (811)
Q Consensus 207 g~I~IwDl~~~~~l~~~~~~~------------~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l 274 (811)
+ ..+.|+.++.......... .++..+.. +++.+|++- ++ +-+|-=..+.........|...-.-
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~-~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DN-IGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cc-eEEEEcCCCCcCcccEEEcCCchhE
Confidence 4 8889998776544332111 22333333 345666643 33 3344333333333344555432222
Q ss_pred eecCCCEEEEEECCCeEEEEEecCCCceeeeeccce
Q 003556 275 NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVT 310 (811)
Q Consensus 275 ~~~dg~lLasg~~Dg~V~IWdvd~~~~~p~~~~~~~ 310 (811)
......+|++. .++.|.||++.++++.........
T Consensus 234 ~~~~~pyli~~-~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 234 VAYSSPYLIAF-SSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred EEEECCEEEEE-CCCEEEEEECcCCcEEEEEECCCE
Confidence 22244555554 446699999999988765554443
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.92 E-value=0.0039 Score=69.55 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=136.9
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-C-------C---------
Q 003556 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-G-------H--------- 100 (811)
Q Consensus 38 Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~-------h--------- 100 (811)
.+.+.|||+.+++...... ....+....|+|+|+.++... ++.|.++++.++...+... + -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 3679999998865544333 257889999999999998875 7889999998885544322 2 0
Q ss_pred CCCeEEEEEeCCCCEEEEEECC-C-----------------------------------cEEEEECCCCeEEE-E-E---
Q 003556 101 RSNCISVDFHPFGEFFASGSLD-T-----------------------------------NLKIWDIRKKGCIH-T-Y--- 139 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~D-g-----------------------------------~I~IwDl~~~~~i~-~-~--- 139 (811)
-+.-..+.|+|++++|+....| . .+.++|+.+++... . .
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1122468899999998876543 1 13344544443211 1 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEE--ECCC---eEEEEECCCCeEEEEEec-CCCCe---EEEEEe-CCC-CEEEEEECCC-
Q 003556 140 KGHTRGVNAIRFTPDGRWVVSG--GEDN---TVKLWDLTAGKLLHDFKC-HEGQI---QCIDFH-PHE-FLLATGSADR- 207 (811)
Q Consensus 140 ~~h~~~I~si~fspdg~~L~sg--s~Dg---~I~IwDl~t~~~i~~~~~-h~~~V---~sv~fs-pdg-~~Lasgs~Dg- 207 (811)
......+..+.|.+++..|+.. ..+. .+.++|..++.....+.. ..+.| ....|. +++ .+|.....||
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1123457788999988844433 2222 477788877654433332 22322 245554 554 4555555677
Q ss_pred -eEEEEECCCCeEEEEeCCCCCCeeE-EEEecCCCEEE-EEECC---CEEEEEecCC--ceeeeeeccccc-eeEeeecC
Q 003556 208 -TVKFWDLETFELIGSAGPETSGVRC-LTFNPDGRTLL-CGLHE---SLKVFSWEPI--RCHDAVDVGWSR-LSDLNVHE 278 (811)
Q Consensus 208 -~I~IwDl~~~~~l~~~~~~~~~I~s-l~fspdg~~La-sgs~d---~I~Vwd~~~~--~~~~~~~~~~~~-i~~l~~~d 278 (811)
.|.+++...+... .+....-.|.. +.|+++++.|+ ++..+ .-.+|...-. .....+...... ......++
T Consensus 260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 4666677766644 45444556754 67888888776 44332 3455555433 222222222221 23334467
Q ss_pred CCEEEEE
Q 003556 279 GKLLGCS 285 (811)
Q Consensus 279 g~lLasg 285 (811)
+++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 7766543
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0029 Score=66.70 Aligned_cols=193 Identities=16% Similarity=0.293 Sum_probs=115.1
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003556 54 SLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (811)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~ 131 (811)
.+.+-...+..|+|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999755 6666677888888886 57888877543 3567889998777777766668999999884
Q ss_pred CCe------EEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEe--------cCCCCeE
Q 003556 132 KKG------CIHTYK-----GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFK--------CHEGQIQ 189 (811)
Q Consensus 132 ~~~------~i~~~~-----~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~--------~h~~~V~ 189 (811)
... ....+. .+...+-.++|.+.++.|+.+-+..-..+|.+.. ...+.... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112222 2445689999999888888887776666665543 22221111 1234578
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCC---------CCeeEEEEecCCCEEEEEECC
Q 003556 190 CIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPET---------SGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 190 sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~---------~~I~sl~fspdg~~Lasgs~d 248 (811)
++.++|. +.+++....+..|..+| ..|+.+..+.-.. ...-.|+|.++|.+.+++-.+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 9999996 66777788888999999 6677666543222 346889999999777766434
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0059 Score=68.85 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=157.2
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVR 95 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~ 95 (811)
-.++++++.+.+.+++...++.|.+.|..+.........-. ....+++++++..++++.. ++++.+.|-.+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34677888777788888788999999987777666555322 5678999999987777765 6899999999999888
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEE-E----EecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIH-T----YKGHTRGVNAIRFTPDGRWVVSGGED---NT 166 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~-~----~~~h~~~I~si~fspdg~~L~sgs~D---g~ 166 (811)
+...-..+ ..+++.|+|++++... .++.|.+.|........ . +. -...-..+.+.|+|.+++..... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 86544444 8899999999766665 78899999977665553 1 22 12234678999999977766554 58
Q ss_pred EEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEeCCCCC---CeeEEEEecC
Q 003556 167 VKLWDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSAGPETS---GVRCLTFNPD 238 (811)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~-~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~~l~~~~~~~~---~I~sl~fspd 238 (811)
+...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 99999998877665221112 4567899999998888854 48899999998887776544322 3455555544
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.015 Score=65.64 Aligned_cols=241 Identities=15% Similarity=0.165 Sum_probs=160.8
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEE
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSSEVLVA-AGAASGTIKLWDLEEAKIVR 95 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l-~~h~~~V~~l~fspdg~~La-sgs~DG~I~IWDl~t~~~v~ 95 (811)
....+.+.+++..+.++-.....+...+.. ....... ..-...-..+++++.+..++ ....++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455667777554555554444445555544 2222221 11113345678888887444 44456899999988877776
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 003556 96 TLTGHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWD 171 (811)
Q Consensus 96 ~l~~h~~~I~sl~fspdg~~Lasgs~---Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs-~Dg~I~IwD 171 (811)
....-. ....+++.++++.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++.|+|..++... .++.|.++|
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 665322 5668999999987777665 689999999988888875543344 8999999999776665 688999999
Q ss_pred CCCCeEEE-E----EecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCC-CeeEEEEecCCCEE
Q 003556 172 LTAGKLLH-D----FKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTL 242 (811)
Q Consensus 172 l~t~~~i~-~----~~~h~~~V~sv~fspdg~~Lasgs~D---g~I~IwDl~~~~~l~~~~~~~~-~I~sl~fspdg~~L 242 (811)
........ . .. -...-..+.+.|+|.++...... +.+...|..++........... ....+.++|+|.++
T Consensus 189 ~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred CCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence 77665553 1 11 12234678899999866665544 5999999999887766222222 56788999999999
Q ss_pred EEEECC--CEEEEEecCCceee
Q 003556 243 LCGLHE--SLKVFSWEPIRCHD 262 (811)
Q Consensus 243 asgs~d--~I~Vwd~~~~~~~~ 262 (811)
.+.... .+.+.+........
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred EEEecCCCeEEEEeCCCCceee
Confidence 887443 46666666544433
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=4.6e-06 Score=94.05 Aligned_cols=196 Identities=17% Similarity=0.317 Sum_probs=130.7
Q ss_pred CCEEEEEEeeCCC-cEEEEEECCCeEEEEECCCCce--EEEecCCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEEC
Q 003556 17 STVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDS-SEVLVAAGA----ASGTIKLWDL 88 (811)
Q Consensus 17 ~~V~~lafsp~~~-~lLatgs~Dg~I~VWdl~t~~~--~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~DG~I~IWDl 88 (811)
..+.|+++.-+.. -++++|..+|.|-+-.+..... -....+|....++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4578888766444 5788999999999988754322 234567888999999987 455666662 2567999999
Q ss_pred CCC--eEE--EEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003556 89 EEA--KIV--RTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (811)
Q Consensus 89 ~t~--~~v--~~l~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~~~~h~~~I~si~fsp-dg~~L~sg 161 (811)
.++ .+. ..+.+ ......+++|..+.+.+++|.....+.++|++... ....+ .+..+..+...| .++++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 111 11222 33445688999888899999999999999998432 12222 233466677888 66777765
Q ss_pred ECCCeEEEEE-CCCCeE-EEEEec----CCCCeEEEEEeCC--CCEEEEEECCCeEEEEECC
Q 003556 162 GEDNTVKLWD-LTAGKL-LHDFKC----HEGQIQCIDFHPH--EFLLATGSADRTVKFWDLE 215 (811)
Q Consensus 162 s~Dg~I~IwD-l~t~~~-i~~~~~----h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~ 215 (811)
. ||.|.+|| .+.-+. +..+.. ....+..++|.|. |.+.+..-..++|++||+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 99999999 443221 111111 1234899999995 4333334456799999985
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.87 E-value=0.023 Score=61.84 Aligned_cols=265 Identities=11% Similarity=0.074 Sum_probs=158.8
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEcCCC---C---
Q 003556 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIVRTLTGHR---S--- 102 (811)
Q Consensus 39 g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~t~~~v~~l~~h~---~--- 102 (811)
+.++|+|.++++.+-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+......+.-.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777763 3344577899999888743 24579999999998877553221 1
Q ss_pred -CeEEEEEeCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003556 103 -NCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLL 178 (811)
Q Consensus 103 -~I~sl~fspdg~~Lasgs--~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i 178 (811)
....++++.+|+++++.. -...|.+.|+..++.+..+.. .+ +..+--. ..+-|.+.|.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEec-CCCceEEEecCCceEEEEECCCCCEe
Confidence 123467888999877654 345799999999999888873 22 2222212 22457788899999888887 45544
Q ss_pred EEE----ecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEeCC----------CCCCeeEEEEecCCCE
Q 003556 179 HDF----KCHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGP----------ETSGVRCLTFNPDGRT 241 (811)
Q Consensus 179 ~~~----~~h~~~V-~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l--~~~~~----------~~~~I~sl~fspdg~~ 241 (811)
... .....++ ..-.+...+..++.-+.+|.|+-.|+...... ..+.. ..+.-.-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 322 1122222 23344555556666888999999988765422 12211 0233456788887766
Q ss_pred EEEEEC----C-----C--EEEEEecCCceeeeeeccccceeEeee--cCCCEEEEE-ECCCeEEEEEecCCCceeeeec
Q 003556 242 LLCGLH----E-----S--LKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCS-YNQSCVGVWVVDISRIEPYTIG 307 (811)
Q Consensus 242 Lasgs~----d-----~--I~Vwd~~~~~~~~~~~~~~~~i~~l~~--~dg~lLasg-~~Dg~V~IWdvd~~~~~p~~~~ 307 (811)
|++-.+ + + |.+||..+.+....+.... .+..+.. .+..+|.+. ..++.+.+||..+++...-...
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 665422 1 2 4555555666666665543 2323333 334466544 4689999999999988765554
Q ss_pred cc
Q 003556 308 SV 309 (811)
Q Consensus 308 ~~ 309 (811)
.+
T Consensus 331 lG 332 (342)
T PF06433_consen 331 LG 332 (342)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00013 Score=83.73 Aligned_cols=196 Identities=15% Similarity=0.248 Sum_probs=123.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE
Q 003556 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136 (811)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i 136 (811)
|...|.--+++..+++++.|+.-|.+++|+-..++....-. +-...+..+..+++..++|.|+..|.|.++.+.....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666777889999999999999999977766443322 34455667788888889999999999999988764321
Q ss_pred -----EEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003556 137 -----HTY-KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (811)
Q Consensus 137 -----~~~-~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D 206 (811)
... +.|...|++++|++++..+++|...|.|.+-.+... ...+.+-...+.|-.+.+. ++.+|++....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhh
Confidence 111 247788999999999999999999999988877762 1112222235666666654 33344443332
Q ss_pred CeEEEEECCCCe--EEEEeCCCCCCeeEEEEecC----CCEEEEEECCCEEEEEec
Q 003556 207 RTVKFWDLETFE--LIGSAGPETSGVRCLTFNPD----GRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 207 g~I~IwDl~~~~--~l~~~~~~~~~I~sl~fspd----g~~Lasgs~d~I~Vwd~~ 256 (811)
..+++++..+ .+..-.-....-...+|-|. .+-.+.+..-+.++|..+
T Consensus 191 --~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 191 --CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred --hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 2344444322 22221111111234445443 333334445566888765
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0084 Score=68.59 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003556 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (811)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (811)
.......+.++|+|++++++ .+|...++.......... +.....+|.+ .+.+|+-...+.|.++.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccce
Confidence 44557889999999999885 488888888554444332 2344678998 4457777778889997322222222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-
Q 003556 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET- 216 (811)
Q Consensus 138 ~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~- 216 (811)
.++. ...+..|-. |..|...+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+.|++...
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 3332 122444433 7777776544 8999999999999998843 48999999999999999866 577766443
Q ss_pred -------------CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEE
Q 003556 217 -------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKV 252 (811)
Q Consensus 217 -------------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~V 252 (811)
...+..+ ...|.+..|..| .++-.+.+.++-
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE
T ss_pred hcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE
Confidence 2444443 456899999876 444444444443
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.83 E-value=0.014 Score=62.36 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=134.6
Q ss_pred CCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----------
Q 003556 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL---------- 97 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l---------- 97 (811)
+++.|+.|+++| |++++.........+. +...|..+...++-+.+++-+ |+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 456788999998 9999983333222222 223499999998877776654 699999998754433311
Q ss_pred ----cCCCCCeEEEE--EeCCCC-EEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 98 ----TGHRSNCISVD--FHPFGE-FFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 98 ----~~h~~~I~sl~--fspdg~-~Lasgs~Dg~I~IwDl~~~-----~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
......+..++ -...+. +|+++ ....|.+|..... +....+. -...+.+++|. ++.++.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc
Confidence 11223344444 112333 44444 4558888877542 3455555 45778999998 56788877554
Q ss_pred eEEEEECCCCeEEEEEecCC------------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE--EeCCCCCCee
Q 003556 166 TVKLWDLTAGKLLHDFKCHE------------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGPETSGVR 231 (811)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~------------~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~--~~~~~~~~I~ 231 (811)
..+.|+.++.....+.... .++..+.. +++.+|++. |..-.+.|.. |+... .+.-. ..+.
T Consensus 159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~-~~p~ 232 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWS-SAPQ 232 (275)
T ss_pred -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEcC-Cchh
Confidence 6888998776544432111 23333333 345555543 4444455543 43322 22222 3456
Q ss_pred EEEEecCCCEEEEEECCCEEEEEecCCceeeeeec
Q 003556 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV 266 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~ 266 (811)
++++. ..||++-..+.|.||++.+++..+.+..
T Consensus 233 ~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 66664 4588888888999999999887666543
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0015 Score=74.37 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=123.2
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEECC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG 81 (811)
Q Consensus 6 ~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~D---g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~DG 81 (811)
.+..+.+..-...+..-+|+|++..+.+..-.. ..++++++.+++....+. ..+.-..-.|+|||+.|+.. ..||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 344455555556777788999776654443322 359999998776655444 22334457899999977665 4455
Q ss_pred e--EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003556 82 T--IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 82 ~--I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~ 156 (811)
. |.+.|+..+...+ +....+.-..=.|+|+|++++..+.. | .|.++|.+.+.. ..+......-..-.|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 4 6666777666444 44333333466799999988877643 3 577778776654 33333333333778999999
Q ss_pred EEEEEEC-CCe--EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003556 157 WVVSGGE-DNT--VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (811)
Q Consensus 157 ~L~sgs~-Dg~--I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~ 205 (811)
+|+..+. +|. |.+.|+.++..+..+. .......-.|.++|..+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 9987764 344 6677776665444333 3333445677888877665543
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.001 Score=76.57 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=94.1
Q ss_pred CCcEEEEEECCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----EEEE-cCC
Q 003556 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI-----VRTL-TGH 100 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~-----v~~l-~~h 100 (811)
.+.+++.|+.-|.+++|+-..++....-. +-.+.+..+..+++..++|+|+..|.|.++-++.... +... ..|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 56789999999999999976655443322 3445566677789999999999999999998875421 1111 237
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003556 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK----GCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~----~~i~~~~~h~~~I~si~fspdg~~L~s 160 (811)
...|++++|++++..|++|...|.|.+-.+... -..+.+-...+.|..+.+. ++..|++
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 789999999999999999999999998887762 1122233345667666665 3333343
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0074 Score=65.71 Aligned_cols=221 Identities=15% Similarity=0.132 Sum_probs=139.4
Q ss_pred EEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC--
Q 003556 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG-- 99 (811)
Q Consensus 22 lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~-- 99 (811)
-.|.++.+.++.+--..+.|.-|+..+++... +. +.+.+.++..-..+..|+++ +.-+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEE--ccccEEEeccCCceeEEecccc
Confidence 35677666677777778889999887553322 22 22334455444444445443 33467778766665333321
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-
Q 003556 100 ---HRSNCISVDFHPFGEFFASGSL-----------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED- 164 (811)
Q Consensus 100 ---h~~~I~sl~fspdg~~Lasgs~-----------Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D- 164 (811)
.....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1134567888898886655433 134555554 466666666555567789999999888877654
Q ss_pred CeEEEEECCC--C----e-EEEEEecCCCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 165 NTVKLWDLTA--G----K-LLHDFKCHEGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 165 g~I~IwDl~t--~----~-~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg-~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
+.|.-|++.. + + ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++++..+......+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7788887752 1 1 1222222345566777888888776655554 89999988 99988887776778888885
Q ss_pred -cCCCEEEEEECC
Q 003556 237 -PDGRTLLCGLHE 248 (811)
Q Consensus 237 -pdg~~Lasgs~d 248 (811)
++.+.|++.+..
T Consensus 264 G~~~~~L~iTs~~ 276 (307)
T COG3386 264 GPDLNTLYITSAR 276 (307)
T ss_pred CCCcCEEEEEecC
Confidence 456677655443
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.0028 Score=72.19 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=81.4
Q ss_pred CeEEEEEeCCCC-EEEEE----ECCCc----EEEEECCCCeE----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 103 NCISVDFHPFGE-FFASG----SLDTN----LKIWDIRKKGC----IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 103 ~I~sl~fspdg~-~Lasg----s~Dg~----I~IwDl~~~~~----i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
...++.|+-... .+.+. +.+|. -++|++...+. +..+ .....+.+++++|+...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEE
Confidence 345677776333 34432 23443 34666654432 1222 36778999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003556 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 218 (811)
||...+.... ....-..+.++|||+|.++++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9987764332 2345567899999999999999999999999987543
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00049 Score=79.92 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=138.2
Q ss_pred EEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--
Q 003556 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT-- 96 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~-- 96 (811)
+++++|+| ..-+|+.|-.-|.+.+|..++.+.......|..+|..+.|+++|..++++..-|.+.+|....-..++.
T Consensus 62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 45699999 777899999999999999887777777778999999999999999999999999999998752111111
Q ss_pred ----------------Ec---------------CCCCCeE-EEEE-------------eCCCCEEEEEECCCcEEEEECC
Q 003556 97 ----------------LT---------------GHRSNCI-SVDF-------------HPFGEFFASGSLDTNLKIWDIR 131 (811)
Q Consensus 97 ----------------l~---------------~h~~~I~-sl~f-------------spdg~~Lasgs~Dg~I~IwDl~ 131 (811)
+. +....+- -.-| .|+|..|+.++.+|+|+-.|-
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq- 219 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ- 219 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-
Confidence 10 0000000 0011 245667888888998887773
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CC----------------------------CeE--EEE
Q 003556 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL-TA----------------------------GKL--LHD 180 (811)
Q Consensus 132 ~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl-~t----------------------------~~~--i~~ 180 (811)
++++....+.. +. ..+-|.+...-+++...+-.+.++-. .+ |-+ ...
T Consensus 220 ~g~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK 297 (1416)
T KOG3617|consen 220 NGRQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK 297 (1416)
T ss_pred CCcEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc
Confidence 44444443321 11 11222222222222222211111111 00 000 000
Q ss_pred Ee-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-C---C---eEEEEe---CCCCCCeeEEEEecCCCEEEEEECCC
Q 003556 181 FK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-T---F---ELIGSA---GPETSGVRCLTFNPDGRTLLCGLHES 249 (811)
Q Consensus 181 ~~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~---~---~~l~~~---~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (811)
+. .....++|+++...+..|+.|...|.+.+|--- + + .-...+ ....+.|+.+.|.|-...+++.+...
T Consensus 298 yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~ 377 (1416)
T KOG3617|consen 298 YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEED 377 (1416)
T ss_pred hhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhh
Confidence 11 123568999999999999999999999999532 2 1 112222 23356789999998666666554444
Q ss_pred EEE
Q 003556 250 LKV 252 (811)
Q Consensus 250 I~V 252 (811)
+.+
T Consensus 378 v~l 380 (1416)
T KOG3617|consen 378 VVL 380 (1416)
T ss_pred eee
Confidence 333
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0011 Score=75.35 Aligned_cols=194 Identities=18% Similarity=0.158 Sum_probs=122.4
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEE---ECC-CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCC
Q 003556 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAG---AAS-GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDT 123 (811)
Q Consensus 49 ~~~~~~l~~h~~~V~~l~fspdg~~Lasg---s~D-G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs-~Dg 123 (811)
+.....+..-...+..-+|++++..++.. ... ..+.++|+.+++....+. ....-..-+|+|||++|+.+. .||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 44445555455677778899998865443 222 469999999887555444 223334568999999766554 455
Q ss_pred --cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q 003556 124 --NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198 (811)
Q Consensus 124 --~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~ 198 (811)
.|+++|+..+.. ..+....+.-..-.|+|||++++..++. | .|.++|+..+.. ..+....+.-..-.|+|||.
T Consensus 261 ~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 577778887763 3344333333466899999999877654 3 477778776654 33333333333778999999
Q ss_pred EEEEEECC-Ce--EEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE
Q 003556 199 LLATGSAD-RT--VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 199 ~Lasgs~D-g~--I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (811)
+|+..+.. |. |.+.|+.++..+..+ ........-.|.++|+.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEec
Confidence 99888753 43 666666655532222 2223334557888888877553
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.022 Score=64.85 Aligned_cols=206 Identities=12% Similarity=0.122 Sum_probs=116.2
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe------EEEEEcCCCCCeEEEEEeCCC
Q 003556 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK------IVRTLTGHRSNCISVDFHPFG 113 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~------~v~~l~~h~~~I~sl~fspdg 113 (811)
.|.||+. .|+.+..+.-..+.|.++.|..+..++ +...||.+++||+.... .+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 477777665445899999999876665 45689999999986332 111111111222222333344
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEEe---c-----CCC-CeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003556 114 EFFASGSLDTNLKIWDIRKKG-CIHTYK---G-----HTR-GVNA-IRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (811)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~~~~-~i~~~~---~-----h~~-~I~s-i~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (811)
++.-..++.+++..-.... ....+. . +.. .... ..++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333345555544322211 111111 0 000 0111 23444555555555566666444332211 22
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEecCCCEEEEEECCCEEEEE
Q 003556 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (811)
Q Consensus 183 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (811)
..+++..|+++|+|++||.-..+|.+.+++..-.+.+..+... ......+.|+-+... +....+.+.++.
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav-~l~~~~~l~lvg 285 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV-VLSWEDELLLVG 285 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE-EEEeCCEEEEEC
Confidence 3468999999999999999999999999987666666555444 456688889876533 333345555543
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0015 Score=78.54 Aligned_cols=194 Identities=18% Similarity=0.260 Sum_probs=122.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceE---EEe------cCCC-CCeEEEEEcCCCCEEEEE-ECCCeE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI---LSL------SGHT-SGIDSVSFDSSEVLVAAG-AASGTI 83 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~---~~l------~~h~-~~V~~l~fspdg~~Lasg-s~DG~I 83 (811)
+.+...+++......+-+++.+. .|-|+.-.....+ ..+ .|.. .+-..+....+.++|+.. .....|
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg~--~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRGS--KIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CCCccceeEeeeccCceEEECCC--cEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 35566677776533444554433 4778876422111 111 1111 111112222234444443 346789
Q ss_pred EEEECCCCeEEEEEcCCCCC-eEEEEEeCC-------CCEEEEEECCCcEEEEECCCCe--EEEE-Ee--cCCCCeEEEE
Q 003556 84 KLWDLEEAKIVRTLTGHRSN-CISVDFHPF-------GEFFASGSLDTNLKIWDIRKKG--CIHT-YK--GHTRGVNAIR 150 (811)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~-I~sl~fspd-------g~~Lasgs~Dg~I~IwDl~~~~--~i~~-~~--~h~~~I~si~ 150 (811)
+-.|++.|+++..+..|... |.. +.|+ ...-+.|-.+..|+.||.|-.. ++.. .+ .......|++
T Consensus 507 y~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 507 YKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred EEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 99999999999999987754 544 4443 2345667778889999998543 3321 11 2345678888
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
-+.+| +||+|+.+|.|++||--..+....+.+...+|.+|..+.||+||++.+ +..|.++++
T Consensus 585 Tt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 585 TTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 88776 699999999999999433333334556678999999999999988877 456777775
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.72 E-value=0.039 Score=62.80 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC-----------cE
Q 003556 62 IDSVSFDSSEVLVAAG-AASG----TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----------NL 125 (811)
Q Consensus 62 V~~l~fspdg~~Lasg-s~DG----~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg-----------~I 125 (811)
+....++|++++++.+ +..| .|+++|+.+++.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3457889999988876 3444 5999999999876543211 1123499999988776665433 37
Q ss_pred EEEECCCCeE--EEEEecCCCC--eEEEEEcCCCCEEEEEECC----CeEEEEECCCC----eEEEEEecCCCCeEEEEE
Q 003556 126 KIWDIRKKGC--IHTYKGHTRG--VNAIRFTPDGRWVVSGGED----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDF 193 (811)
Q Consensus 126 ~IwDl~~~~~--i~~~~~h~~~--I~si~fspdg~~L~sgs~D----g~I~IwDl~t~----~~i~~~~~h~~~V~sv~f 193 (811)
+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.|+..+ .....+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2334433322 6688899999998765432 35888898875 233333333334433333
Q ss_pred eCCCCEEEEEE---CCCeEEEEECCCCeE---EEEeCCCCC--CeeEEEEecCCCEEEEE-ECC---CEEEEEec-CCce
Q 003556 194 HPHEFLLATGS---ADRTVKFWDLETFEL---IGSAGPETS--GVRCLTFNPDGRTLLCG-LHE---SLKVFSWE-PIRC 260 (811)
Q Consensus 194 spdg~~Lasgs---~Dg~I~IwDl~~~~~---l~~~~~~~~--~I~sl~fspdg~~Lasg-s~d---~I~Vwd~~-~~~~ 260 (811)
+.++.+++... .++.|.-.++..... ...+..+.. .+..+.. .+.+|+.. ..+ .|.+|++. ....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33444444443 345777788877652 223444444 3455544 44455543 344 38888888 4333
Q ss_pred eeeeeccccceeEeee-cCCCEEEEEEC----CCeEEEEEecCCCceeee
Q 003556 261 HDAVDVGWSRLSDLNV-HEGKLLGCSYN----QSCVGVWVVDISRIEPYT 305 (811)
Q Consensus 261 ~~~~~~~~~~i~~l~~-~dg~lLasg~~----Dg~V~IWdvd~~~~~p~~ 305 (811)
....-.....+..+.. .++..+..... -++++.||+.+++...+.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 3332223333333332 33333332222 367888888888877653
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.70 E-value=0.0025 Score=72.54 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=84.5
Q ss_pred cCCCCEEEEEEeeCCCcEEEEE----ECCCe----EEEEECCCCce--EEEe-cCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTG----GEDHK----VNLWAIGKPNA--ILSL-SGHTSGIDSVSFDSSEVLVAAGAASGT 82 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatg----s~Dg~----I~VWdl~t~~~--~~~l-~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (811)
-......++.|+-...+.+.|. +.+|. -.+|++...+. +... -.....|.|++++|++..++.|+.||+
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 3445567778887555555554 23443 34566543321 1111 146789999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~ 133 (811)
|.+||...+.... ....-..+.++|||+|..|++|+..|.|.+||+.-.
T Consensus 283 iiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 283 IILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999987664332 234456788999999999999999999999998643
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.66 E-value=0.034 Score=63.32 Aligned_cols=225 Identities=11% Similarity=0.084 Sum_probs=124.0
Q ss_pred EEEEEEeeCCCcEEEEEECCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-----------eE
Q 003556 19 VNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-----------TI 83 (811)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg----~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG-----------~I 83 (811)
+...+++|++..++++-+..| .|+++|+.+++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 346788996665555555555 49999999997765321111 122399999988776665433 37
Q ss_pred EEEECCCCeE--EEEEcCCCC--CeEEEEEeCCCCEEEEEECC----CcEEEEECCCC----eEEEEEecCCCCe-EEEE
Q 003556 84 KLWDLEEAKI--VRTLTGHRS--NCISVDFHPFGEFFASGSLD----TNLKIWDIRKK----GCIHTYKGHTRGV-NAIR 150 (811)
Q Consensus 84 ~IWDl~t~~~--v~~l~~h~~--~I~sl~fspdg~~Lasgs~D----g~I~IwDl~~~----~~i~~~~~h~~~I-~si~ 150 (811)
+.|.+.+... ...+..... ....+..++++++|+..... ..+++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 233333222 26788899999987754432 35888898874 2233333333334 3344
Q ss_pred EcCCCCEEEEEEC---CCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEE-EEEECCC--eEEEEECC-CCeEE
Q 003556 151 FTPDGRWVVSGGE---DNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPHEFLL-ATGSADR--TVKFWDLE-TFELI 220 (811)
Q Consensus 151 fspdg~~L~sgs~---Dg~I~IwDl~t~~~---i~~~~~h~~~V~sv~fspdg~~L-asgs~Dg--~I~IwDl~-~~~~l 220 (811)
.. .+.+++.... .+.|...++..... ...+-.+...+.-..+...+.+| +....++ .|++||+. .....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 43 3334443322 35777788877652 22444444433333333434444 4444444 68999999 55554
Q ss_pred EEeCCCCCCeeEEEEecCCCEEEEE
Q 003556 221 GSAGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasg 245 (811)
.......+.|..+...+++..+...
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEE
T ss_pred eecCCcceEEeccCCCCCCCEEEEE
Confidence 4444455556777666776666543
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.56 E-value=0.023 Score=63.47 Aligned_cols=228 Identities=15% Similarity=0.165 Sum_probs=128.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEe-cC-------C---------CCCeEEEEEcCCCCEEEEEE
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-SG-------H---------TSGIDSVSFDSSEVLVAAGA 78 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l-~~-------h---------~~~V~~l~fspdg~~Lasgs 78 (811)
...+....|+|+ ++.++-.. ++.|++++..++...+.. .| - -+.-..+.|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 567888999995 55555553 578999998766444322 12 0 11235688999999888765
Q ss_pred CCC------------------------------------eEEEEECCCCeEEE--EE---cCCCCCeEEEEEeCCCCEEE
Q 003556 79 ASG------------------------------------TIKLWDLEEAKIVR--TL---TGHRSNCISVDFHPFGEFFA 117 (811)
Q Consensus 79 ~DG------------------------------------~I~IWDl~t~~~v~--~l---~~h~~~I~sl~fspdg~~La 117 (811)
.|- .+.++|+.+++... .. ..-...+..+.|.+++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 431 23345555444321 11 12334577899999988444
Q ss_pred EE--ECCC---cEEEEECCCCeEEEEEec-CCC---CeEEEEEc-CCCC-EEEEEECCCe--EEEEECCCCeEEEEEecC
Q 003556 118 SG--SLDT---NLKIWDIRKKGCIHTYKG-HTR---GVNAIRFT-PDGR-WVVSGGEDNT--VKLWDLTAGKLLHDFKCH 184 (811)
Q Consensus 118 sg--s~Dg---~I~IwDl~~~~~i~~~~~-h~~---~I~si~fs-pdg~-~L~sgs~Dg~--I~IwDl~t~~~i~~~~~h 184 (811)
.. ..+. .+.++|..++.+...+.. ... .-..+.|. +++. +|.....+|. |.+++...+.. ..+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC
Confidence 43 3322 567778877654333322 122 22345554 5555 4445556664 66677776653 355545
Q ss_pred CCCeEE-EEEeCCCCEEE-EEEC----CCeEEEEECC-CCeEEEEeCCCCCCeeEEEEecCCCEEEEEEC
Q 003556 185 EGQIQC-IDFHPHEFLLA-TGSA----DRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (811)
Q Consensus 185 ~~~V~s-v~fspdg~~La-sgs~----Dg~I~IwDl~-~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (811)
...|.. +.|++++..|+ ++.. ...|+..++. .+.. ..+....+.-..+.|||+|++++..+.
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence 566744 67888766554 4444 2367777777 4444 444443333369999999999985543
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.025 Score=64.78 Aligned_cols=227 Identities=13% Similarity=0.105 Sum_probs=112.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
.++.+....-....+.++| +++++++ +.||...|+.......... +.-...+|...++ +|+-...++|.++.
T Consensus 24 ~~k~lg~~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYK 95 (443)
T ss_dssp --EEEEE-SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEE
T ss_pred EeccCCCCCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEE
Confidence 3445555666788999999 6676666 4567888887443333222 2335688888554 56666688899974
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 88 l~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
--+.+....+.. ...+..+-. |..|+..+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp TTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred cCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eE
Confidence 322222223321 122333322 7777777654 7999999999999999843 38999999999999988755 56
Q ss_pred EEEECCCC-----------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003556 168 KLWDLTAG-----------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (811)
Q Consensus 168 ~IwDl~t~-----------~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fs 236 (811)
.+++.... .....+..-...|.+.+|..+ .++-.+.. .|+.+ -.|+. ..+.....++.=+.+.
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~ 241 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYL 241 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEE
Confidence 66654332 012222222467888888766 33333333 66653 33332 1222223345555556
Q ss_pred cCCCEEEEEECC-CEEEEEec
Q 003556 237 PDGRTLLCGLHE-SLKVFSWE 256 (811)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~ 256 (811)
++...++....+ .+..+.++
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--
T ss_pred ccCCEEEEEECCCCEEEEEEC
Confidence 544455544333 34444443
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.48 E-value=0.13 Score=56.20 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=145.7
Q ss_pred EEEeeCCCcEEEEE----------ECCCeEEEEECCCCceEEEecCCC-------CCeEEEEEcCCCCEEEEEEC--CCe
Q 003556 22 LKIGRKSSRVLVTG----------GEDHKVNLWAIGKPNAILSLSGHT-------SGIDSVSFDSSEVLVAAGAA--SGT 82 (811)
Q Consensus 22 lafsp~~~~lLatg----------s~Dg~I~VWdl~t~~~~~~l~~h~-------~~V~~l~fspdg~~Lasgs~--DG~ 82 (811)
+.++|++ +.++++ -..-.|.+||..+-.....+.-.. .....++++.+++++++... ...
T Consensus 41 ~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 5677844 444443 233469999999887766543211 12334678899998877644 467
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEEEEEe----cCCCCeE-EEEEcCCCC
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYK----GHTRGVN-AIRFTPDGR 156 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i~~~~----~h~~~I~-si~fspdg~ 156 (811)
|.|.|+..++.+..+.- .+ |..+--.. .+-|.+-|.||.+.-..+. .|+...+.. ....++. .-++...+.
T Consensus 120 VtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 99999999999988862 22 22222122 2458888899999999887 455443221 1122222 334445555
Q ss_pred EEEEEECCCeEEEEECCCCeEEE--EEecC----------CCCeEEEEEeCCCCEEEEEECC---C-------eEEEEEC
Q 003556 157 WVVSGGEDNTVKLWDLTAGKLLH--DFKCH----------EGQIQCIDFHPHEFLLATGSAD---R-------TVKFWDL 214 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~--~~~~h----------~~~V~sv~fspdg~~Lasgs~D---g-------~I~IwDl 214 (811)
.++-.+.+|.|+-.|+....... .+... .+...-+++++....|++.-.. | .|.+||+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 66667899999999987654322 22110 1233457888765555543221 1 5999999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEecCCC-EEEEEEC--CCEEEEEecCCceeeeee
Q 003556 215 ETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH--ESLKVFSWEPIRCHDAVD 265 (811)
Q Consensus 215 ~~~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~--d~I~Vwd~~~~~~~~~~~ 265 (811)
.+++.+..+... .++.+|..+.|.+ +|++.+. +.+.+||..+++....++
T Consensus 277 ~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 277 KTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 999999988653 4578999999877 4444333 359999999988766553
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.42 E-value=0.0026 Score=76.50 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=98.4
Q ss_pred ECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCCe--EEEE-Ee--cCCCCe
Q 003556 120 SLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTP-----DGRWVVSGGEDNTVKLWDLTAGK--LLHD-FK--CHEGQI 188 (811)
Q Consensus 120 s~Dg~I~IwDl~~~~~i~~~~~h~~~-I~si~fsp-----dg~~L~sgs~Dg~I~IwDl~t~~--~i~~-~~--~h~~~V 188 (811)
.....|+-.|++.|+.+..++.|... |..++-.. .....+.|-.+..+..||.|-.. ++.. .+ ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34678999999999999999987754 55443221 23456778889999999998632 3321 11 133456
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEe
Q 003556 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (811)
Q Consensus 189 ~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (811)
.|++-+.+| +||+|+.+|.|++||--...-...+.+.+.+|.+|..+.||++|++.+...|.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 777776666 899999999999999433222233556689999999999999999999888888775
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.41 E-value=0.1 Score=61.39 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=139.6
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCC--CC--CeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEcCC
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH--TS--GIDSVSFDSSEVLVAAGAA------SGTIKLWDLEEAKIVRTLTGH 100 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h--~~--~V~~l~fspdg~~Lasgs~------DG~I~IWDl~t~~~v~~l~~h 100 (811)
.++.++.|+.|...|..+++.+...... .. .+.+--.--++ .|+++.. +|.|..+|.++|+.+..+..-
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 4667788999999999999998776531 11 11111001134 4455432 689999999999987765421
Q ss_pred CC-------------------------------Ce-EEEEEeCCCCEEEEEECC-----C-----------cEEEEECCC
Q 003556 101 RS-------------------------------NC-ISVDFHPFGEFFASGSLD-----T-----------NLKIWDIRK 132 (811)
Q Consensus 101 ~~-------------------------------~I-~sl~fspdg~~Lasgs~D-----g-----------~I~IwDl~~ 132 (811)
.. .+ ..+.+.+...+++.+..+ + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 11 11 123555555656555421 2 678889999
Q ss_pred CeEEEEEecCCCCeE---------EEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEec------------CC-CC
Q 003556 133 KGCIHTYKGHTRGVN---------AIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKC------------HE-GQ 187 (811)
Q Consensus 133 ~~~i~~~~~h~~~I~---------si~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~------------h~-~~ 187 (811)
++....++.....+. -+.+..+|+ .++.+..+|.++++|.++|+.+...+. .. .+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 999888874322222 222324665 677899999999999999988632100 00 00
Q ss_pred e----------------------------EEEEEeCCCCEEEEEECC---------------------------------
Q 003556 188 I----------------------------QCIDFHPHEFLLATGSAD--------------------------------- 206 (811)
Q Consensus 188 V----------------------------~sv~fspdg~~Lasgs~D--------------------------------- 206 (811)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 125566655555443322
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEE-CCCEEEEEecCCceeeeeeccc
Q 003556 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGW 268 (811)
Q Consensus 207 g~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~ 268 (811)
|.|.-||+.+++.+-..........+. +.-.|.+++.+. ++.++.+|-++++.+-.+..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 457778888888777654332212222 122444666665 4468888888888776665543
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.085 Score=60.13 Aligned_cols=229 Identities=13% Similarity=0.128 Sum_probs=121.7
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEe-------cCCCCCeEEEEEcCCCCEEEEEECC
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-------SGHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 8 ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~D 80 (811)
.+..+.--.+.|.++.|.. +. .|++-..||.+++||+. |+....+ .-....+.+..+..+|-.+++ .+
T Consensus 72 ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~ 146 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GN 146 (410)
T ss_pred EeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CC
Confidence 3444443447888888876 44 36667789999999985 3331111 111222333344445633333 35
Q ss_pred CeEEEEECCCCe-EEEEEc---CCC-----C-CeEE-EEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003556 81 GTIKLWDLEEAK-IVRTLT---GHR-----S-NCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (811)
Q Consensus 81 G~I~IWDl~t~~-~v~~l~---~h~-----~-~I~s-l~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si 149 (811)
+.+.+..-.... ..+.+. ... . .... ..+..+....+....++.+.+.+-...+. +. ..+++..|
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~i 222 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKI 222 (410)
T ss_pred CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEE
Confidence 555444322211 111111 100 0 0000 22333444444444555555444322111 22 24679999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003556 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (811)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~ 228 (811)
++||+|++++.-..+|.+.+....-.+.+.++... ......+.|.-+ |..+..|. ..+..+.....
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~---------dav~l~~~----~~l~lvg~~~~ 289 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN---------DAVVLSWE----DELLLVGPDGD 289 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC---------CcEEEEeC----CEEEEECCCCC
Confidence 99999999999999999999987766777776643 334556666544 44444441 12222222222
Q ss_pred CeeEEEEecCCCEEEEEECCCEEEEEecCCcee
Q 003556 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261 (811)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~ 261 (811)
.+.|..++..++..--|+++|+.-+....+
T Consensus 290 ---~~~~~~~~~~~l~~E~DG~riit~~~~~~l 319 (410)
T PF04841_consen 290 ---SISFWYDGPVILVSEIDGVRIITSTSHEFL 319 (410)
T ss_pred ---ceEEeccCceEEeccCCceEEEeCCceEEE
Confidence 235555666666777778888865544433
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.38 E-value=0.032 Score=63.02 Aligned_cols=229 Identities=16% Similarity=0.203 Sum_probs=124.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC--------
Q 003556 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------- 132 (811)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-------- 132 (811)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-....+.+.+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876543322 0001111112222110 0111222334321
Q ss_pred -CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeC-----CC-
Q 003556 133 -KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHP-----HE- 197 (811)
Q Consensus 133 -~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--------h~~~V~sv~fsp-----dg- 197 (811)
..+...+....++|++++.+.- -++++|+.+|.+.|.|+|....+..-.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1234445556789999999844 4899999999999999999888876332 224588888873 33
Q ss_pred --CEEEEEECCCeEEEEECCC---Ce----EEEEeCCCCCCeeEEE-EecC---------------------CCEEEEEE
Q 003556 198 --FLLATGSADRTVKFWDLET---FE----LIGSAGPETSGVRCLT-FNPD---------------------GRTLLCGL 246 (811)
Q Consensus 198 --~~Lasgs~Dg~I~IwDl~~---~~----~l~~~~~~~~~I~sl~-fspd---------------------g~~Lasgs 246 (811)
-.|++|+..|.+.+|.+-- +. .......+.++|..+. |+.+ ..++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4799999999999997741 21 1222234556666554 3222 12677777
Q ss_pred CCCEEEEEecCCceeeeee-ccccceeEee-----ecCCCEEEEEECCCeEEEEEecC
Q 003556 247 HESLKVFSWEPIRCHDAVD-VGWSRLSDLN-----VHEGKLLGCSYNQSCVGVWVVDI 298 (811)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~-~~~~~i~~l~-----~~dg~lLasg~~Dg~V~IWdvd~ 298 (811)
...++|+.....++..... .......... ...+..|+|-..+|.|+++.+-.
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 8889999888766543322 1111111111 23567888889999999997765
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.38 E-value=4.5e-05 Score=86.30 Aligned_cols=196 Identities=20% Similarity=0.338 Sum_probs=129.2
Q ss_pred CCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE--EEEEcCCCCCeEEEEEeCC-CCEEEEEE----CCCcEEEE
Q 003556 58 HTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF-GEFFASGS----LDTNLKIW 128 (811)
Q Consensus 58 h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t~~~--v~~l~~h~~~I~sl~fspd-g~~Lasgs----~Dg~I~Iw 128 (811)
....+.|+++.- +...+++|..+|.|.+-.+....- .....+|...+++++|.+- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345778888754 345889999999999988765432 3445678889999999984 44666663 35689999
Q ss_pred ECCCC--eEE--EEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEE
Q 003556 129 DIRKK--GCI--HTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLAT 202 (811)
Q Consensus 129 Dl~~~--~~i--~~~~~-h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp-dg~~Las 202 (811)
|+.++ .+. ..|.+ ......+++|..+.+.+++|.....+.++|++....... ......+..+...| .+.++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhhhhcccceecCCCCCceec
Confidence 99876 221 12222 334566889998889999999999999999984322111 11234566677778 6667777
Q ss_pred EECCCeEEEEE-CCCCeE-EEEeCCC----CCCeeEEEEecCCC-EEEEEECCC--EEEEEe
Q 003556 203 GSADRTVKFWD-LETFEL-IGSAGPE----TSGVRCLTFNPDGR-TLLCGLHES--LKVFSW 255 (811)
Q Consensus 203 gs~Dg~I~IwD-l~~~~~-l~~~~~~----~~~I~sl~fspdg~-~Lasgs~d~--I~Vwd~ 255 (811)
-. ||.|-+|| .++.+. +..+... ...+..++|+|... .+++...++ |+.|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 66 99999999 444332 2222211 22488999999643 344555554 555544
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.38 E-value=0.24 Score=54.99 Aligned_cols=262 Identities=12% Similarity=0.097 Sum_probs=127.6
Q ss_pred ECCCCceEEEecCCCCCeE-----EEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003556 45 AIGKPNAILSLSGHTSGID-----SVSFDSSEVLVAAGAA-S--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (811)
Q Consensus 45 dl~t~~~~~~l~~h~~~V~-----~l~fspdg~~Lasgs~-D--G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~L 116 (811)
|..+|..+..+..+...-. .=+|.++|+.|+.++. + ..+.+.|+.+++..+...+.........++++.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 5567777777764333222 2356778876555544 4 467777899998877665433333356678888887
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEEEEC----------------------CCeEEEEEC
Q 003556 117 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT--PDGRWVVSGGE----------------------DNTVKLWDL 172 (811)
Q Consensus 117 asgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fs--pdg~~L~sgs~----------------------Dg~I~IwDl 172 (811)
+.......|+-.|+.+++....+......+-...|. .|+..++-.-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 766666789999999988766666555555445553 35555442211 235666788
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCE-EEEEEC------CCeEEEEECCCCeEEEEeCCC--CCCeeEEEEecCCCEEE
Q 003556 173 TAGKLLHDFKCHEGQIQCIDFHPHEFL-LATGSA------DRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLL 243 (811)
Q Consensus 173 ~t~~~i~~~~~h~~~V~sv~fspdg~~-Lasgs~------Dg~I~IwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~La 243 (811)
.+|+....+. ....+..+.|+|...- |+-|.+ |..|.+.+.. +.....+..+ ...+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEE
Confidence 8887665555 4677899999997554 444442 2234444543 3333333322 22344556899998877
Q ss_pred E-EE-CCC----EEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCC----------------eEEEEEecCCCc
Q 003556 244 C-GL-HES----LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS----------------CVGVWVVDISRI 301 (811)
Q Consensus 244 s-gs-~d~----I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg----------------~V~IWdvd~~~~ 301 (811)
. +. .++ |.-++.++..........|. ..-....||++++.=+.|. .|+++++..++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~-~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWC-SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SE-EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCce-eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 4 22 232 33344444443333344432 2233447888886544442 455666666666
Q ss_pred eeeeeccc
Q 003556 302 EPYTIGSV 309 (811)
Q Consensus 302 ~p~~~~~~ 309 (811)
..+..+..
T Consensus 333 ~~l~~h~~ 340 (386)
T PF14583_consen 333 RKLARHDT 340 (386)
T ss_dssp EEEEE---
T ss_pred eeeeeccC
Confidence 65555443
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.34 E-value=0.21 Score=55.51 Aligned_cols=274 Identities=11% Similarity=0.079 Sum_probs=133.2
Q ss_pred EEeeCCCcEEEEEECCCe--EEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC
Q 003556 23 KIGRKSSRVLVTGGEDHK--VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100 (811)
Q Consensus 23 afsp~~~~lLatgs~Dg~--I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h 100 (811)
+|.+++.++|+.+..||. +++.|+.+++..+...+-........++++.+.++-......|...|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 356666778887776764 666678887776655543232334666788888776666778999999998876666656
Q ss_pred CCCeEEEEEe--CCCCEEEEEEC----------------------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003556 101 RSNCISVDFH--PFGEFFASGSL----------------------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (811)
Q Consensus 101 ~~~I~sl~fs--pdg~~Lasgs~----------------------Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~ 156 (811)
...+-...|. .++..++-.-. ...|.-.|+.+|+....+. ....+..+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 6655556664 34444433211 1346677888877655554 456688999999555
Q ss_pred EEEEEECCC-----eEEEEECCC-CeEEEEEecCC--CCeEEEEEeCCCCEEEEEE-----CCCeEEEEECCCCeEEEEe
Q 003556 157 WVVSGGEDN-----TVKLWDLTA-GKLLHDFKCHE--GQIQCIDFHPHEFLLATGS-----ADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 157 ~L~sgs~Dg-----~I~IwDl~t-~~~i~~~~~h~--~~V~sv~fspdg~~Lasgs-----~Dg~I~IwDl~~~~~l~~~ 223 (811)
.+++=+..| .-+||-+++ +.....+..+. ..+..=-|.|||..|.--+ .+..|.-+|..+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 555444333 125565442 33333333222 2345556889988665432 2446777888887654322
Q ss_pred CCCCCCeeEEEEecCCCEEEEEECC-----------------CEEEEEecCCceeeeee--cccc---------ceeEee
Q 003556 224 GPETSGVRCLTFNPDGRTLLCGLHE-----------------SLKVFSWEPIRCHDAVD--VGWS---------RLSDLN 275 (811)
Q Consensus 224 ~~~~~~I~sl~fspdg~~Lasgs~d-----------------~I~Vwd~~~~~~~~~~~--~~~~---------~i~~l~ 275 (811)
.. .....+.-++||++++.-+.+ -|.+++.+..+...... ..|. .-..-+
T Consensus 281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 21 234456667899888743222 13334444433322211 1111 112234
Q ss_pred ecCCCEEE-EEECCCeEEEEEecCC
Q 003556 276 VHEGKLLG-CSYNQSCVGVWVVDIS 299 (811)
Q Consensus 276 ~~dg~lLa-sg~~Dg~V~IWdvd~~ 299 (811)
.+||+.++ .+...|...||-++..
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCCCEEEEECCCCCCccEEEEeCc
Confidence 47777554 5666788888766653
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.31 E-value=0.045 Score=60.14 Aligned_cols=171 Identities=12% Similarity=0.158 Sum_probs=106.9
Q ss_pred eEEEEECCCCceEEEecCCC-CCeEEEE---EcCC----CCEEEEEEC----------CCeEEEEECCCC----eEEEEE
Q 003556 40 KVNLWAIGKPNAILSLSGHT-SGIDSVS---FDSS----EVLVAAGAA----------SGTIKLWDLEEA----KIVRTL 97 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~-~~V~~l~---fspd----g~~Lasgs~----------DG~I~IWDl~t~----~~v~~l 97 (811)
.|++.|..+.+.+..+.-.. ..+.+++ |..+ ..+|++|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57788877777666554222 2344433 3332 467777754 289999999884 122211
Q ss_pred --cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 98 --TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 98 --~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~~~~-h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~ 173 (811)
....++|++++-. +.+|+++. ++.|++|++...+ ....-.. ....+.++... +++++.|.....+.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2356789888877 44555554 5889999998777 4333221 22356666655 6699999887877776443
Q ss_pred C-CeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003556 174 A-GKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (811)
Q Consensus 174 t-~~~i~~~~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (811)
. +..+..+.. ....++++.|-+++..++.+..+|.+.++...
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 332333322 34568889998777799999999999999875
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.19 Score=54.90 Aligned_cols=214 Identities=14% Similarity=0.096 Sum_probs=129.2
Q ss_pred EEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--
Q 003556 65 VSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-- 141 (811)
Q Consensus 65 l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~-- 141 (811)
-.|.++.. ++.+--..+.|.-||..+++.. .+. +...+.++..-..+..|+++. .| +.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEecccc
Confidence 45667666 4445556788999998866432 222 233445555544455555553 33 77778766655333321
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C
Q 003556 142 ---HTRGVNAIRFTPDGRWVVSGGE-----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D 206 (811)
Q Consensus 142 ---h~~~I~si~fspdg~~L~sgs~-----------Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~-D 206 (811)
.....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.++|+||++.|+.+.. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888899886665433 134555554 46666666655556689999999987777654 4
Q ss_pred CeEEEEECCC--C----e-EEEEeCCCCCCeeEEEEecCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeee-
Q 003556 207 RTVKFWDLET--F----E-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNV- 276 (811)
Q Consensus 207 g~I~IwDl~~--~----~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~i~~l~~- 276 (811)
+.|+-|++.. + . ....+....+..-.++...+|.+.+++..+ .+.+|+-+ ++....+.+......++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7888888762 1 1 122223344556778888899888655444 68888877 7777777666444444444
Q ss_pred -cCCCEEEE
Q 003556 277 -HEGKLLGC 284 (811)
Q Consensus 277 -~dg~lLas 284 (811)
.+.+.|.+
T Consensus 264 G~~~~~L~i 272 (307)
T COG3386 264 GPDLNTLYI 272 (307)
T ss_pred CCCcCEEEE
Confidence 33444433
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.015 Score=65.42 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=102.6
Q ss_pred CCCCE-EEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE-------EEEEECCCcEEEEECCCCeE--EEE
Q 003556 69 SSEVL-VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF-------FASGSLDTNLKIWDIRKKGC--IHT 138 (811)
Q Consensus 69 pdg~~-Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~-------Lasgs~Dg~I~IwDl~~~~~--i~~ 138 (811)
.+.++ +..+.....|+-.|++.|+++..+.-+.. |.-+.+.|+.+. =+.|-.+..|+-||.+-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34444 44455567789999999999999997766 778888887542 34456678899999873322 222
Q ss_pred EecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 139 YKGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 139 ~~~h----~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
-++| .....|++-..+| ++++|+.+|.|++||--.......+.+...+|..+..+.+|++|++.+ +.++.+.++
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2222 2346677666665 799999999999999743344445667788999999999999888766 567777775
Q ss_pred C
Q 003556 215 E 215 (811)
Q Consensus 215 ~ 215 (811)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.11 E-value=0.35 Score=51.14 Aligned_cols=184 Identities=11% Similarity=0.121 Sum_probs=121.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCCC-CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHRS-NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~t~~~v~~l~~h~~-~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i 136 (811)
.....+.|..++.++-+.+.-| .|+.+|+.+++......-... --..++.. +++.+.-.-.++...+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3455688877888888887776 799999999998766542221 12334444 2233344446889999999999998
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-----CCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-----EGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 137 ~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-----~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
.++.- .+.=+.++ .||..|+.......|+++|..+.+....+... -..++.+.|. +|.+.|-.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88863 44556666 45777887777788999999888777766532 2346677776 6777777767788999
Q ss_pred EECCCCeEEEEeCC---------------CCCCeeEEEEecCCCEEEEEECC
Q 003556 212 WDLETFELIGSAGP---------------ETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 212 wDl~~~~~l~~~~~---------------~~~~I~sl~fspdg~~Lasgs~d 248 (811)
.|..+|+.+..+.. ...-.+.|+|.|.+..|++.+..
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 99999998876411 13457899999987776655443
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0021 Score=73.35 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=80.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE-EEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~-sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (811)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999998 777888887777777 99999999999999999999999999998777
Q ss_pred EEe-cCCCCeEEEEEcC
Q 003556 138 TYK-GHTRGVNAIRFTP 153 (811)
Q Consensus 138 ~~~-~h~~~I~si~fsp 153 (811)
.+. .....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345678888863
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.08 E-value=0.11 Score=57.08 Aligned_cols=177 Identities=12% Similarity=0.221 Sum_probs=107.1
Q ss_pred CcEEEEEEC----------CCeEEEEECCCC----ceEEEe--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003556 29 SRVLVTGGE----------DHKVNLWAIGKP----NAILSL--SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (811)
Q Consensus 29 ~~lLatgs~----------Dg~I~VWdl~t~----~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (811)
..++++|+. .|.|.++++.+. ..+..+ ....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 567887743 289999999873 222222 2356889999876 34 344443 6899999998877
Q ss_pred -EEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003556 93 -IVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (811)
Q Consensus 93 -~v~~l~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~~~--~h~~~I~si~fspdg~~L~sgs~Dg~I 167 (811)
....-. .....+.++... ++++++|.....+.++..+. ...+..+. .....++++.|-++++.++.+..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 443332 123356666665 77999999888888775432 22222222 234568899998777799999999999
Q ss_pred EEEECCC-------C--eEE--EEEecCCCCeEEE---EEeC--CC------CEEEEEECCCeEEE
Q 003556 168 KLWDLTA-------G--KLL--HDFKCHEGQIQCI---DFHP--HE------FLLATGSADRTVKF 211 (811)
Q Consensus 168 ~IwDl~t-------~--~~i--~~~~~h~~~V~sv---~fsp--dg------~~Lasgs~Dg~I~I 211 (811)
.++.... + +.. ..+. ....|+++ .+.| .+ ..++.++.+|.|..
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9987652 2 222 2333 34557776 4445 22 24777778888773
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.008 Score=67.42 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=99.4
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCCC-e-EEEEEecC--
Q 003556 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTAG-K-LLHDFKCH-- 184 (811)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~-------~L~sgs~Dg~I~IwDl~t~-~-~i~~~~~h-- 184 (811)
|..+.....|+-.|++.|+.+..++-+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+-. + .+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 44555566799999999999999997766 77888888643 2345667889999999843 2 22222222
Q ss_pred --CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEe
Q 003556 185 --EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (811)
Q Consensus 185 --~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (811)
.....|.+-..+| ++++|+.+|.|++||--...--..+.+.+.+|..+..+.||++|++.+...+.+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 2234555554455 899999999999999733333344677788999999999999999988887766654
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0029 Score=72.21 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=80.4
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~-si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (811)
...+.-+.|+|.-+.||.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999988 777888887777777 99999999999999999999999999998877
Q ss_pred EEec-CCCCeEEEEEeC
Q 003556 180 DFKC-HEGQIQCIDFHP 195 (811)
Q Consensus 180 ~~~~-h~~~V~sv~fsp 195 (811)
.+.. ....|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 7421 356678888864
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.15 Score=54.05 Aligned_cols=193 Identities=15% Similarity=0.216 Sum_probs=130.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003556 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (811)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (811)
.+-...|.++.|+|+.+.|++......-.||=-.+|+.++++.-. -.....+.|...|++.++--.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999999999988888888888887889999887521 2334568888888888888889999998876553
Q ss_pred EEEEEe---------cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEecC-------CCCeEEEEEe
Q 003556 135 CIHTYK---------GH-TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCH-------EGQIQCIDFH 194 (811)
Q Consensus 135 ~i~~~~---------~h-~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h-------~~~V~sv~fs 194 (811)
.+...+ .+ ......++|.|..+.|+.+-+..-+.||.+..+.. .+....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 222211 12 55688999999988898888877777776653321 1111111 1346778888
Q ss_pred C-CCCEEEEEECCCeEEEEECCCCeEEEEeC---C---C---CCCeeEEEEecCCCEEEEEECCC
Q 003556 195 P-HEFLLATGSADRTVKFWDLETFELIGSAG---P---E---TSGVRCLTFNPDGRTLLCGLHES 249 (811)
Q Consensus 195 p-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~---~---~---~~~I~sl~fspdg~~Lasgs~d~ 249 (811)
+ .+.+|+.+.+++.+.-.|... ..+..+. + . -...-.++..++|.+.+++-.+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCc
Confidence 7 467888888888888888764 3333321 1 1 11235577777776666654443
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.95 E-value=0.077 Score=63.09 Aligned_cols=170 Identities=13% Similarity=0.043 Sum_probs=98.7
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE------CCC--cEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003556 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS------LDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs------~Dg--~I~IwDl~~~~~i~~~~~h~~~I~si~f 151 (811)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++... .|. .|++++.. +.. ..+.. ....+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceE
Confidence 66665544332222222223334678899999999877665 233 56666653 222 33321 223788899
Q ss_pred cCCCCEEEEEECC------------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE---EECCC
Q 003556 152 TPDGRWVVSGGED------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF---WDLET 216 (811)
Q Consensus 152 spdg~~L~sgs~D------------g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I---wDl~~ 216 (811)
+|||.+|++.... +.+.+.++..+.... ...+.|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999988877533 233333443333222 2246799999999999888876 577877 44445
Q ss_pred CeE-E---EEeCC-CCCCeeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 217 FEL-I---GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 217 ~~~-l---~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
|.. + ..+.. ....+.++.|..++.+++......-.+|.+.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 541 1 11222 2334688999999986644333334455544
No 375
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.94 E-value=0.21 Score=61.03 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=123.2
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCCCCC--------eEEEEEcC----------------CCCEEEEEECCCeEEEE
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG--------IDSVSFDS----------------SEVLVAAGAASGTIKLW 86 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~DG~I~IW 86 (811)
.++.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..|+.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777788899999999999999887643211 12233321 33478888899999999
Q ss_pred ECCCCeEEEEEcCCCCCeE-------------EEEEeC--CCCEEEEEEC----------CCcEEEEECCCCeEEEEEec
Q 003556 87 DLEEAKIVRTLTGHRSNCI-------------SVDFHP--FGEFFASGSL----------DTNLKIWDIRKKGCIHTYKG 141 (811)
Q Consensus 87 Dl~t~~~v~~l~~h~~~I~-------------sl~fsp--dg~~Lasgs~----------Dg~I~IwDl~~~~~i~~~~~ 141 (811)
|.++|+.+..+.. .+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+..
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999999877642 22110 111111 2456666643 68899999999999888752
Q ss_pred C---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEEecCC
Q 003556 142 H---------TR--------GV-NAIRFTPDGRWVVSGG------------------EDNTVKLWDLTAGKLLHDFKCHE 185 (811)
Q Consensus 142 h---------~~--------~I-~si~fspdg~~L~sgs------------------~Dg~I~IwDl~t~~~i~~~~~h~ 185 (811)
- .+ .+ ..+++.+....++.+. ..+.|.-.|.++|+....++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 1 00 01 2334444434433321 23567778899999888876522
Q ss_pred CCeE---------EEEEeC-CCC---EEEEEECCCeEEEEECCCCeEEEEeC
Q 003556 186 GQIQ---------CIDFHP-HEF---LLATGSADRTVKFWDLETFELIGSAG 224 (811)
Q Consensus 186 ~~V~---------sv~fsp-dg~---~Lasgs~Dg~I~IwDl~~~~~l~~~~ 224 (811)
..++ -+.+.. +|+ .++.++.+|.++++|-++|+++....
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2111 122322 553 78999999999999999999887643
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.89 E-value=0.064 Score=63.77 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003556 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA------ASG--TIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (811)
Q Consensus 38 Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~DG--~I~IWDl~t~~~v~~l~~h~~~I~sl~f 109 (811)
+|.+.-.+-.....+....+....+...+++|+|+.++... .|+ .|.+++.. +.......+. ....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceE
Confidence 66665544222222222223334678899999999887765 243 55555642 2222223332 3778899
Q ss_pred eCCCCEEEEEECC------------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCC
Q 003556 110 HPFGEFFASGSLD------------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL---WDLTA 174 (811)
Q Consensus 110 spdg~~Lasgs~D------------g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I---wDl~t 174 (811)
+|+|..|++.... +.+++.+++.+.... .....|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776532 233333444333222 2356799999999999988766 577776 44344
Q ss_pred CeE-E---EEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEE--ECCCCeEEEEeCC--CCCCeeEEEEecCCCEEEEE
Q 003556 175 GKL-L---HDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFW--DLETFELIGSAGP--ETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 175 ~~~-i---~~~~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw--Dl~~~~~l~~~~~--~~~~I~sl~fspdg~~Lasg 245 (811)
|.. + ..+.. ....+..+.|..++.++ ++..++...+| ++...... .+.. ...++..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEE
Confidence 531 1 11222 23346889999998855 55554444444 44422211 1111 2455666666653 34444
Q ss_pred ECCC
Q 003556 246 LHES 249 (811)
Q Consensus 246 s~d~ 249 (811)
..++
T Consensus 557 ~~~g 560 (591)
T PRK13616 557 DARA 560 (591)
T ss_pred cCCc
Confidence 4444
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.78 E-value=0.95 Score=47.89 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=123.5
Q ss_pred eeEEEEecCCCC--EEEEEEeeCCCcEEEEEECCC--eEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCC
Q 003556 7 YKLQEFVAHSST--VNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASG 81 (811)
Q Consensus 7 ~ki~~~~~H~~~--V~~lafsp~~~~lLatgs~Dg--~I~VWdl~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~DG 81 (811)
+++..-..|... ...+.|.. ++.++-+.|.-| .|+.+|+.+++......-. .---..++...+ ++....-.++
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~ 110 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSS
T ss_pred eEEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCC
Confidence 455555556653 55788865 667777777776 6999999999887655422 222334444433 3444446789
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCC
Q 003556 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGR 156 (811)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~-----~~I~si~fspdg~ 156 (811)
...+||..+.+.+.++.- ...-+.++ .+++.|+.......|+++|..+.+....+.-.. ..++-+.|. +|.
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred eEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999999998873 45666777 457778877778889999998888777665321 245667776 566
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEec---------------CCCCeEEEEEeCCCCEEEEEE
Q 003556 157 WVVSGGEDNTVKLWDLTAGKLLHDFKC---------------HEGQIQCIDFHPHEFLLATGS 204 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~---------------h~~~V~sv~fspdg~~Lasgs 204 (811)
..+=.-....|...|..+|++...+.. ...-.+.++|+|....|...+
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 555555677888999999998887641 024578999999765544444
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.72 E-value=0.074 Score=48.54 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=69.6
Q ss_pred EEEEEEee---CCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 19 VNCLKIGR---KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (811)
Q Consensus 19 V~~lafsp---~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (811)
|+++++.. ++...|++|++|..|++|+- .+.+..+. .++.|.+++-... ..++.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 56666654 45578999999999999983 46666666 3567788877665 568888999999999852 3333
Q ss_pred EEcCCCCCeEEEEEeC-C--CC-EEEEEECCCcEE
Q 003556 96 TLTGHRSNCISVDFHP-F--GE-FFASGSLDTNLK 126 (811)
Q Consensus 96 ~l~~h~~~I~sl~fsp-d--g~-~Lasgs~Dg~I~ 126 (811)
.++ .+..+.++++.. + |. .|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344 233466666544 2 22 688888888763
No 379
>PHA02713 hypothetical protein; Provisional
Probab=96.71 E-value=0.08 Score=62.81 Aligned_cols=219 Identities=10% Similarity=0.046 Sum_probs=108.1
Q ss_pred eEEEEECCCCeEEE--EEcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEE--EecCCCCeEEEEE
Q 003556 82 TIKLWDLEEAKIVR--TLTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHT--YKGHTRGVNAIRF 151 (811)
Q Consensus 82 ~I~IWDl~t~~~v~--~l~~h~~~I~sl~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~--~~~h~~~I~si~f 151 (811)
.+..||..+++... .+...... .+++.. ++..++.|+.+ ..+..||..+...... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778887765332 12111111 122332 46667777753 3477889877643211 11111111 2222
Q ss_pred cCCCCEEEEEECCC-----eEEEEECCCCeEEE--EEecCCCCeEEEEEeCCCCEEEEEECCC-----------------
Q 003556 152 TPDGRWVVSGGEDN-----TVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGSADR----------------- 207 (811)
Q Consensus 152 spdg~~L~sgs~Dg-----~I~IwDl~t~~~i~--~~~~h~~~V~sv~fspdg~~Lasgs~Dg----------------- 207 (811)
-+|+..+.||.++ .+..||..+.+-.. .+.........+ .-+|.+.+.|+.++
T Consensus 350 -~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 -IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence 2577778888764 47889988764222 111111111122 23677788887652
Q ss_pred ------eEEEEECCCCeEE--EEeCCCCCCeeEEEEecCCCEEEEEECC-------CEEEEEecC-Cceeeeeeccccc-
Q 003556 208 ------TVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHE-------SLKVFSWEP-IRCHDAVDVGWSR- 270 (811)
Q Consensus 208 ------~I~IwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d-------~I~Vwd~~~-~~~~~~~~~~~~~- 270 (811)
.+..||..+.+-. ..+...... .+++ .-+|++.++|+.+ .+..||.+. .+-..........
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777887765432 222111111 1222 2356666666432 133455443 2222222222211
Q ss_pred eeEeeecCCCEEEEEECCC--eEEEEEecCCCceeeeecc
Q 003556 271 LSDLNVHEGKLLGCSYNQS--CVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 271 i~~l~~~dg~lLasg~~Dg--~V~IWdvd~~~~~p~~~~~ 308 (811)
...+...+|++.++|+.++ .+..||+.+.+-......+
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 2334557899999999888 6667777766655444333
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.68 E-value=0.098 Score=62.10 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=119.7
Q ss_pred cCCCCEEEEEECCC------eEEEEECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECC-C-----cEEEEECCCCe
Q 003556 68 DSSEVLVAAGAASG------TIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLD-T-----NLKIWDIRKKG 134 (811)
Q Consensus 68 spdg~~Lasgs~DG------~I~IWDl~t~~~v~~l~~-h~~~I~sl~fspdg~~Lasgs~D-g-----~I~IwDl~~~~ 134 (811)
+..+.+++.||.++ .+..+|..++.......- ....-.+++.. .+..+++|+.| | .+..||.+..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33466777887773 677888887754332221 22223344444 46778888888 3 57788887766
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 135 CIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDNT-----VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (811)
Q Consensus 135 ~i~~--~~~h~~~I~si~fspdg~~L~sgs~Dg~-----I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg 207 (811)
-... +...........+ +|...++||.||. +-.||..+.+--..-.-....-..-...-+|.+.++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 3321 1111111111111 5788889999874 67788776542211111111111122233678888888654
Q ss_pred ------eEEEEECCCCeEE--EEeCCCCCCeeEEEEecCCCEEEEEECCC------EEEEEecCCceeeeeeccccc-ee
Q 003556 208 ------TVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGWSR-LS 272 (811)
Q Consensus 208 ------~I~IwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~~~-i~ 272 (811)
.+..||..+.+-. ..+........ ++ .-++.+.++|+.++ +..||..+.+-..+-...... -.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 5778887765432 22222222222 22 22566666665543 455555443322221121111 11
Q ss_pred EeeecCCCEEEEEECCC-----eEEEEEecCCCc
Q 003556 273 DLNVHEGKLLGCSYNQS-----CVGVWVVDISRI 301 (811)
Q Consensus 273 ~l~~~dg~lLasg~~Dg-----~V~IWdvd~~~~ 301 (811)
.+...++++.++|+.|| +|..||..+.+-
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 23446788888888775 555665555443
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.64 E-value=0.058 Score=63.99 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCcEEEEEECC------CeEEEEECCCCceEEEecCCCCCe-EEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEE
Q 003556 28 SSRVLVTGGED------HKVNLWAIGKPNAILSLSGHTSGI-DSVSFDSSEVLVAAGAASG-----TIKLWDLEEAKIVR 95 (811)
Q Consensus 28 ~~~lLatgs~D------g~I~VWdl~t~~~~~~l~~h~~~V-~~l~fspdg~~Lasgs~DG-----~I~IWDl~t~~~v~ 95 (811)
++.+++.||.+ ..+..||..+..... +..-..+. ......-++++.+.||.++ .+..||..+.+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 45677777753 347778876654322 22111111 1111123577777887754 47889988765432
Q ss_pred --EEcCCCCCeEEEEEeCCCCEEEEEECCC-----------------------cEEEEECCCCeEEE--EEecCCCCeEE
Q 003556 96 --TLTGHRSNCISVDFHPFGEFFASGSLDT-----------------------NLKIWDIRKKGCIH--TYKGHTRGVNA 148 (811)
Q Consensus 96 --~l~~h~~~I~sl~fspdg~~Lasgs~Dg-----------------------~I~IwDl~~~~~i~--~~~~h~~~I~s 148 (811)
.+.........+.+ +|...+.|+.++ .+..||..+.+-.. .+....... +
T Consensus 382 ~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~ 458 (557)
T PHA02713 382 LPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-G 458 (557)
T ss_pred CCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-c
Confidence 11111111222222 577777777543 46778877654321 111111111 2
Q ss_pred EEEcCCCCEEEEEECCC------eEEEEECCC-Ce--EEEEEecCCCCeEEEEEeCCCCEEEEEECCC--eEEEEECCCC
Q 003556 149 IRFTPDGRWVVSGGEDN------TVKLWDLTA-GK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADR--TVKFWDLETF 217 (811)
Q Consensus 149 i~fspdg~~L~sgs~Dg------~I~IwDl~t-~~--~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~IwDl~~~ 217 (811)
++. -+|+..+.||.++ .+..||..+ .+ .+..+.........+.+ +|++.++|+.+| .+..||..+.
T Consensus 459 ~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 459 VVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 222 2466667776542 467899886 33 22333222222222222 678899999888 6777777765
Q ss_pred eEE
Q 003556 218 ELI 220 (811)
Q Consensus 218 ~~l 220 (811)
+-.
T Consensus 536 ~W~ 538 (557)
T PHA02713 536 EWN 538 (557)
T ss_pred ccc
Confidence 543
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.35 Score=50.99 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=125.9
Q ss_pred CeEEEEEeCCCC-EEEEEECCCc-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 003556 103 NCISVDFHPFGE-FFASGSLDTN-LKIWDIRKKGCIHTYKGHTRG--VNAIRFTPDGRWVVSGGED-----NTVKLWDLT 173 (811)
Q Consensus 103 ~I~sl~fspdg~-~Lasgs~Dg~-I~IwDl~~~~~i~~~~~h~~~--I~si~fspdg~~L~sgs~D-----g~I~IwDl~ 173 (811)
....++|+|.-. -++.+-.-|+ ..++|....+...++...++. .-.=.|+|||.+|+..-.| |.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 344677888554 4555555553 567888877766655432211 1233699999999876443 789999998
Q ss_pred CC-eEEEEEecCCCCeEEEEEeCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEeC----CCCCCe
Q 003556 174 AG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSA------------------DRTVKFWDLETFELIGSAG----PETSGV 230 (811)
Q Consensus 174 t~-~~i~~~~~h~~~V~sv~fspdg~~Lasgs~------------------Dg~I~IwDl~~~~~l~~~~----~~~~~I 230 (811)
.+ ..+.+|..|.-....+.|.+||+.|+.+.. .-.+.+.|..+++++.+.. .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 456677777777889999999999888642 1134555656666654432 234568
Q ss_pred eEEEEecCCCEEEEEECCC------EEEEEecCCceeeeeeccc-------cceeEeeec--CCCEEEEEECCCeEEEEE
Q 003556 231 RCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGW-------SRLSDLNVH--EGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~-------~~i~~l~~~--dg~lLasg~~Dg~V~IWd 295 (811)
+.++..+||..++.+...+ .-|=....++.+..+++.. ..+..+..+ ++-..+++-..++.-+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 8999999998887654321 1122222333333332221 223344444 455556666677889999
Q ss_pred ecCCCcee
Q 003556 296 VDISRIEP 303 (811)
Q Consensus 296 vd~~~~~p 303 (811)
.+++.+.-
T Consensus 309 a~tG~vv~ 316 (366)
T COG3490 309 AATGAVVS 316 (366)
T ss_pred cCCCcEEe
Confidence 99998874
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.60 E-value=0.0058 Score=42.10 Aligned_cols=39 Identities=38% Similarity=0.687 Sum_probs=34.3
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (811)
Q Consensus 49 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (811)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.59 E-value=1.5 Score=47.70 Aligned_cols=281 Identities=12% Similarity=0.066 Sum_probs=130.8
Q ss_pred cccceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec--CC---CCCeEEEEEcCCCCEEEEE
Q 003556 3 TKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GH---TSGIDSVSFDSSEVLVAAG 77 (811)
Q Consensus 3 ~kr~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~--~h---~~~V~~l~fspdg~~Lasg 77 (811)
....|+...+.. ...+..|.|.. ...-+++| ..+.|. --.+-|+.-.... .. .-....|.|..+ ..+++
T Consensus 4 ~~~~W~~v~l~t-~~~l~dV~F~d-~~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv- 77 (302)
T PF14870_consen 4 SGNSWQQVSLPT-DKPLLDVAFVD-PNHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV- 77 (302)
T ss_dssp SS--EEEEE-S--SS-EEEEEESS-SS-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-
T ss_pred cCCCcEEeecCC-CCceEEEEEec-CCEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-
Confidence 445667776653 45899999983 44445555 456442 2222232222111 11 123667777643 34444
Q ss_pred ECCCeEEEEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcC
Q 003556 78 AASGTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTP 153 (811)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~~~~h~~~I~si~fsp 153 (811)
+..|. .+.-.+.|+.-..+. .-......+....++. ...++..|.|+.= .+.++. ......-...+..+..++
T Consensus 78 G~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 78 GEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp EETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T
T ss_pred cCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC
Confidence 44553 333444444333322 1223334444444443 3334455654322 223332 222334456788899999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE-CCCCeEEEE----eCCCCC
Q 003556 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD-LETFELIGS----AGPETS 228 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD-l~~~~~l~~----~~~~~~ 228 (811)
||++++++.....+.-||--...-...-......|..|.|.|++.+.+.+ ..|.|++=+ ....+.... +....-
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 99988888666666778854322222222346789999999998766654 888888887 222222222 122334
Q ss_pred CeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeec---cccceeEeeecCCCEEEEEECCCeEEEE
Q 003556 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~i~~l~~~dg~lLasg~~Dg~V~IW 294 (811)
.+..++|.+++...++|..+. -+...+.++.-..... -...++.+.+.+.+.-.+-+++|.|--|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 589999999988888776654 4556666555433322 1234555555444444455677776554
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0074 Score=41.53 Aligned_cols=39 Identities=44% Similarity=0.892 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003556 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (811)
Q Consensus 133 ~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD 171 (811)
+.++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677778889999999999999999999999999996
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.55 E-value=0.13 Score=60.98 Aligned_cols=212 Identities=16% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCcEEEEEECCC------eEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEE
Q 003556 28 SSRVLVTGGEDH------KVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAAS------GTIKLWDLEEAKIV 94 (811)
Q Consensus 28 ~~~lLatgs~Dg------~I~VWdl~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------G~I~IWDl~t~~~v 94 (811)
.+.+++.||.++ .+..||..++.......- +...-.++++. ++.+.++||.| .++..||..+.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456778887773 678888877654433221 22223344443 45677888888 35778888777643
Q ss_pred EE--EcCCCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003556 95 RT--LTGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCI--HTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (811)
Q Consensus 95 ~~--l~~h~~~I~sl~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~i--~~~~~h~~~I~si~fspdg~~L~sgs~Dg 165 (811)
.. +........ ++.. +|...++|+.|| .|-.||..+.+.- ..+...........+ +|...++||.++
T Consensus 363 ~~a~M~~~R~~~~-v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFG-VAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccce-eEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 31 111112221 2222 577888999887 4667777655422 111111111222222 577788888664
Q ss_pred ------eEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCeEEEE--eCCCCCCe
Q 003556 166 ------TVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADR-----TVKFWDLETFELIGS--AGPETSGV 230 (811)
Q Consensus 166 ------~I~IwDl~t~~~i~~--~~~h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~l~~--~~~~~~~I 230 (811)
.+..||..+++-... +........ ++ .-++.+.+.|+.|+ +|..||..+.+-... .......+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 467788877643322 221111111 22 23677888888776 377888877554332 22222222
Q ss_pred eEEEEecCCCEEEEEECC
Q 003556 231 RCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d 248 (811)
....+ +++..++|+.+
T Consensus 517 g~~~~--~~~ly~vGG~~ 532 (571)
T KOG4441|consen 517 GVVVL--GGKLYAVGGFD 532 (571)
T ss_pred cEEEE--CCEEEEEeccc
Confidence 22222 45555666544
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.78 Score=48.46 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=133.6
Q ss_pred eEEEEEcCCCC-EEEEEECCCe-EEEEECCCCeEEEEEcCCCCC--eEEEEEeCCCCEEEEEECC-----CcEEEEECCC
Q 003556 62 IDSVSFDSSEV-LVAAGAASGT-IKLWDLEEAKIVRTLTGHRSN--CISVDFHPFGEFFASGSLD-----TNLKIWDIRK 132 (811)
Q Consensus 62 V~~l~fspdg~-~Lasgs~DG~-I~IWDl~t~~~v~~l~~h~~~--I~sl~fspdg~~Lasgs~D-----g~I~IwDl~~ 132 (811)
-..|+|+|.-. -++.+-.-|+ ..++|....+...++....+. --.-.|+|+|.+|...-.| |.|-+||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34577777543 4555555554 568898887766665432222 1124699999988876543 7899999984
Q ss_pred C-eEEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEe----cCCCCeE
Q 003556 133 K-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGE------------------DNTVKLWDLTAGKLLHDFK----CHEGQIQ 189 (811)
Q Consensus 133 ~-~~i~~~~~h~~~I~si~fspdg~~L~sgs~------------------Dg~I~IwDl~t~~~i~~~~----~h~~~V~ 189 (811)
+ ..+..+..|.-.-..+.|.+||+.++.+.- .-.+.+.|..+|+++.+.. .+.-.|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3 456677788878889999999999887632 1134455656666555433 2334577
Q ss_pred EEEEeCCCCEEEEEECCCe-----EEEEECCCCeEEEEeCC-------CCCCeeEEEEecCCCEEEEEECC--CEEEEEe
Q 003556 190 CIDFHPHEFLLATGSADRT-----VKFWDLETFELIGSAGP-------ETSGVRCLTFNPDGRTLLCGLHE--SLKVFSW 255 (811)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~-----I~IwDl~~~~~l~~~~~-------~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~ 255 (811)
.++..+||..++.+-..|. -.+=-...++.+.-+.. ....|-+++.+.+..+++..+-. ..-+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 7888777766555443331 01111122333332221 13456778888766666655443 4778888
Q ss_pred cCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEE
Q 003556 256 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (811)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IW 294 (811)
+++.......+.- ...+... ..-+++++.+|.+.++
T Consensus 310 ~tG~vv~~a~l~d--aaGva~~-~~gf~vssg~G~~~~~ 345 (366)
T COG3490 310 ATGAVVSEAALPD--AAGVAAA-KGGFAVSSGQGRIIFY 345 (366)
T ss_pred CCCcEEecccccc--cccceec-cCceEEecCCceEEec
Confidence 8876543322111 1122222 2334455566666655
No 388
>PRK13684 Ycf48-like protein; Provisional
Probab=96.42 E-value=2.1 Score=47.43 Aligned_cols=278 Identities=10% Similarity=0.044 Sum_probs=135.7
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEECC
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 5 r~~ki~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~D 80 (811)
..|+...+. -...+.+++|.. ..+-+++|. +|.|..= .+.++.-.... .....+.++.|.++ ..+++ +..
T Consensus 35 ~~W~~~~~~-~~~~l~~v~F~d-~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~ 108 (334)
T PRK13684 35 SPWQVIDLP-TEANLLDIAFTD-PNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQP 108 (334)
T ss_pred CCcEEEecC-CCCceEEEEEeC-CCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCC
Confidence 356666543 356899999984 455565554 5544331 12222222111 12234778888654 34444 445
Q ss_pred CeEEEEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCC
Q 003556 81 GTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGR 156 (811)
Q Consensus 81 G~I~IWDl~t~~~v~~l~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~~~I~si~fspdg~ 156 (811)
|.|..- -+.|+....+. ........+.....+..++ ++..|.|..=+ +.++.-..+. .....+.++.+.|++.
T Consensus 109 g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~ 185 (334)
T PRK13684 109 SLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK 185 (334)
T ss_pred ceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe
Confidence 544332 12232222221 1111122222222222333 33445443222 2232222221 2245688999999887
Q ss_pred EEEEEECCCeEEE-EECCCCeEEEEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC----CCCCe
Q 003556 157 WVVSGGEDNTVKL-WDLTAGKLLHDF-KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSGV 230 (811)
Q Consensus 157 ~L~sgs~Dg~I~I-wDl~t~~~i~~~-~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~----~~~~I 230 (811)
+++++ ..|.+.. +| ..++.-... ......++++.+.+++..+++| ..|.+.+=....+..-..... ....+
T Consensus 186 ~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l 262 (334)
T PRK13684 186 YVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGY 262 (334)
T ss_pred EEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccce
Confidence 66554 5665543 22 222222222 2334678999999999877765 467665433444432222111 22457
Q ss_pred eEEEEecCCCEEEEEECCCEEEEEecCCceeeeeec---cccceeEeeecCCCEEEEEECCCeEEEEE
Q 003556 231 RCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~i~~l~~~dg~lLasg~~Dg~V~IWd 295 (811)
..+.|.+++..+++|..+ ..+...+.++....... ....+..+.+.+++.....+..|.|--|+
T Consensus 263 ~~v~~~~~~~~~~~G~~G-~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 263 LDLAYRTPGEIWAGGGNG-TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred eeEEEcCCCCEEEEcCCC-eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 889999998877777544 34455554444333221 11234455554444445566777776664
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.0035 Score=63.68 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=81.2
Q ss_pred EEEEEECCCeEEEEECCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEE-
Q 003556 73 LVAAGAASGTIKLWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAI- 149 (811)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~-~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~~~~h~~~I~si- 149 (811)
.+..-+.+|.|.-+++...+... ....|... .....-+..+++|+.+|.|++|......... .+..-...|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 34444667888777765433211 11112222 1112234679999999999999876322111 111112223332
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEE--ECCCeEEEEECCC
Q 003556 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATG--SADRTVKFWDLET 216 (811)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-~~V~sv~fspdg~~Lasg--s~Dg~I~IwDl~~ 216 (811)
.-..++.+.++++.+|.|+.|++.-++.+.....|. .++........+.+++.+ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222356688999999999999999888777666666 444444444445555555 5666666666653
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.41 E-value=1 Score=50.57 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=107.3
Q ss_pred CCcEEEEEE-CCCeEEEEECC----CCceEEEecC---CC----CCeEEEEEcCCCCEEEEEEC------CCeEEEEECC
Q 003556 28 SSRVLVTGG-EDHKVNLWAIG----KPNAILSLSG---HT----SGIDSVSFDSSEVLVAAGAA------SGTIKLWDLE 89 (811)
Q Consensus 28 ~~~lLatgs-~Dg~I~VWdl~----t~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------DG~I~IWDl~ 89 (811)
..++|+..+ ..+.|+|.|+. ..+..+.+.. +. ..-..+..-|+|..++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345566655 77899999986 3444555542 11 11222334578888777522 2568889988
Q ss_pred CCeEEEEEcCCC---CCeEEEEEeCCCCEEEEEEC--------------------CCcEEEEECCCCeEEEEEecCCC--
Q 003556 90 EAKIVRTLTGHR---SNCISVDFHPFGEFFASGSL--------------------DTNLKIWDIRKKGCIHTYKGHTR-- 144 (811)
Q Consensus 90 t~~~v~~l~~h~---~~I~sl~fspdg~~Lasgs~--------------------Dg~I~IwDl~~~~~i~~~~~h~~-- 144 (811)
+.+......... ..-..+.|.|..+.+++... ...+.+||+.+.+.++++.--..
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888887776432 34567888998888888753 24799999999999999874332
Q ss_pred CeEEEEEcCC--CCE-EEEEECCCeEEEEEC-CCCe----EEEEEecC-----------------CCCeEEEEEeCCCCE
Q 003556 145 GVNAIRFTPD--GRW-VVSGGEDNTVKLWDL-TAGK----LLHDFKCH-----------------EGQIQCIDFHPHEFL 199 (811)
Q Consensus 145 ~I~si~fspd--g~~-L~sgs~Dg~I~IwDl-~t~~----~i~~~~~h-----------------~~~V~sv~fspdg~~ 199 (811)
....+.|..+ ..+ ++.+-..+.|..|-- ..++ .+-++... ..-|+.+..+.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3456777643 333 333334455554433 3442 12222110 234789999999999
Q ss_pred EEEEE-CCCeEEEEECCC---CeEEEEeC----------------CCCCCeeEEEEecCCCEEEEEE
Q 003556 200 LATGS-ADRTVKFWDLET---FELIGSAG----------------PETSGVRCLTFNPDGRTLLCGL 246 (811)
Q Consensus 200 Lasgs-~Dg~I~IwDl~~---~~~l~~~~----------------~~~~~I~sl~fspdg~~Lasgs 246 (811)
|...+ .+|.|+.||+.. -+++.++. ...+...-+..|-||+.|++.+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 88877 589999999976 23443321 1123346788888998888653
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.38 E-value=0.31 Score=56.01 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECC-
Q 003556 102 SNCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD----GRWVVSGGEDNTVKLWDLT- 173 (811)
Q Consensus 102 ~~I~sl~fspdg~~Lasgs---~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspd----g~~L~sgs~Dg~I~IwDl~- 173 (811)
.++..++|. ||+.++-.. .+|.+++=| ...+..| ..|..+.|.|- -..|++.-....|.+|.+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 477889998 566544332 244443333 2234444 35889999984 3356666678899999875
Q ss_pred ----CCeEEEEEecCC---CC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEecCCCEEE
Q 003556 174 ----AGKLLHDFKCHE---GQ--IQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLL 243 (811)
Q Consensus 174 ----t~~~i~~~~~h~---~~--V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~La 243 (811)
.++.+....++- -+ -..+.|||....|++-.....-.+++++... .+..--...+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 233333222211 11 2467799999988888776665677765432 2322224457799999999999999
Q ss_pred EEECCCEEEEEecCCc
Q 003556 244 CGLHESLKVFSWEPIR 259 (811)
Q Consensus 244 sgs~d~I~Vwd~~~~~ 259 (811)
++-...++-|-|+...
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 9988888888888643
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.36 E-value=0.3 Score=44.68 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=70.4
Q ss_pred eEEEEEeC---CC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 104 CISVDFHP---FG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (811)
Q Consensus 104 I~sl~fsp---dg-~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (811)
|+++++.. +| +.|++|+.|..|++|+= ...+..+. ....|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55666654 33 47999999999999984 46777777 4556888877765 568999999999999853 3344
Q ss_pred EEecCCCCeEEEEEeC-CC---CEEEEEECCCeEE
Q 003556 180 DFKCHEGQIQCIDFHP-HE---FLLATGSADRTVK 210 (811)
Q Consensus 180 ~~~~h~~~V~sv~fsp-dg---~~Lasgs~Dg~I~ 210 (811)
..+. ...+.++.+.. ++ .-|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4553 33466666544 32 3688888888764
No 393
>PRK10115 protease 2; Provisional
Probab=96.33 E-value=4.1 Score=49.76 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEE
Q 003556 61 GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWD 129 (811)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~D------g~I~IwD 129 (811)
.+..+.|+|++++|+.+... ..|++.|+.+++.+...-.... ..++|.++++.|+....+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988864322211111 469999999876665432 3688888
Q ss_pred CCCC--eEEEEEecCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEE
Q 003556 130 IRKK--GCIHTYKGHTRGVN-AIRFTPDGRWVVSGGE---DNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (811)
Q Consensus 130 l~~~--~~i~~~~~h~~~I~-si~fspdg~~L~sgs~---Dg~I~IwDl~--t~~~i~~~~~h~~~V~sv~fspdg~~La 201 (811)
+.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+....+....+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8877 33333443333333 3333448887775544 3568888853 3432222222222223332 33333333
Q ss_pred EEECC---CeEEEEECCC-CeEEEEeCCC-CCCeeEEEEecCCCEEEEEECCC-EEEEEec
Q 003556 202 TGSAD---RTVKFWDLET-FELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256 (811)
Q Consensus 202 sgs~D---g~I~IwDl~~-~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~ 256 (811)
....+ ..|...++.. ++....+... ...|..+.+..+ .++++...++ -+++.++
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEc
Confidence 33222 2344445542 2222222332 346788888733 3334444443 3344433
No 394
>PRK10115 protease 2; Provisional
Probab=96.31 E-value=4.1 Score=49.69 Aligned_cols=191 Identities=5% Similarity=-0.037 Sum_probs=99.2
Q ss_pred CEEEEEEeeCCCcEEEEE-ECCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC------CeEEEE
Q 003556 18 TVNCLKIGRKSSRVLVTG-GEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS------GTIKLW 86 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatg-s~Dg----~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------G~I~IW 86 (811)
.+..+.|+|++ ++|+.+ ..+| .|++.|+.++..+...-... -..++|.+|++.|+....+ ..|..|
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899954 445444 3333 58888988776432221111 1459999998866655432 368888
Q ss_pred ECCCC--eEEEEEcCCCCCeE-EEEEeCCCCEEEEEEC---CCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003556 87 DLEEA--KIVRTLTGHRSNCI-SVDFHPFGEFFASGSL---DTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 87 Dl~t~--~~v~~l~~h~~~I~-sl~fspdg~~Lasgs~---Dg~I~IwDl~--~~~~i~~~~~h~~~I~si~fspdg~~L 158 (811)
++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +. +..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEE
Confidence 98887 33334443333333 2333447877655443 4578898853 3332222222222222222 22 2334
Q ss_pred EEEECC----CeEEEEECCCCeEEEEEecC-C-CCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 159 VSGGED----NTVKLWDLTAGKLLHDFKCH-E-GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 159 ~sgs~D----g~I~IwDl~t~~~i~~~~~h-~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
+..+.. ..|...++........+-.+ . ..|..+.+. .+.++++...+|.-++|-+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 433332 23444555421112223333 2 367778877 3456666666776554433
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.29 E-value=2.2 Score=46.38 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=108.0
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI- 93 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~- 93 (811)
..+++.|.. ...+++| ..| +.+.-.+.++.-..+. .-......+....++..++ ++..|.|..=. +.|+.
T Consensus 63 ~l~~I~f~~--~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDG--NEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTW 136 (302)
T ss_dssp EEEEEEEET--TEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSE
T ss_pred eEEEEEecC--CceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCe
Confidence 356677753 3445544 455 3333444444433332 1123333444433443333 34456543322 23332
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~ 173 (811)
......-...+..+..+++|.+++++.......-||--...-...-......|..|.|.|++...+. ...|.|++=+..
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDP 215 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-T
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCC
Confidence 2233445577888999999999988866555567875432222222224578999999999876554 489999888722
Q ss_pred -CCeEEEE----EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE---eCCCCCCeeEEEEecCCCEEEEE
Q 003556 174 -AGKLLHD----FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS---AGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 174 -t~~~i~~----~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~---~~~~~~~I~sl~fspdg~~Lasg 245 (811)
..+.-.. .......+..++|.+++...|+|+ .|.+ +.....|+.-.. ...-...++.+.|..+.+-++.|
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 2222111 111223478999999887777665 4433 445555543333 23335568899998887788888
Q ss_pred ECCCE
Q 003556 246 LHESL 250 (811)
Q Consensus 246 s~d~I 250 (811)
.++-|
T Consensus 294 ~~G~l 298 (302)
T PF14870_consen 294 QDGVL 298 (302)
T ss_dssp STTEE
T ss_pred CCcEE
Confidence 65543
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.29 E-value=0.5 Score=48.53 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=123.8
Q ss_pred EEeeCCCcEEEEEECCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCC---CEEEEEECCCeEEEEE--CCCCeEEEE
Q 003556 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSE---VLVAAGAASGTIKLWD--LEEAKIVRT 96 (811)
Q Consensus 23 afsp~~~~lLatgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~l~fspdg---~~Lasgs~DG~I~IWD--l~t~~~v~~ 96 (811)
.|....+.++.+--..|.|.-||+.+.+... .+.+. ++..+.+--.+ .+.+.++..-.|--|| .+..+..++
T Consensus 21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t 98 (310)
T KOG4499|consen 21 HWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRT 98 (310)
T ss_pred ceEEecceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeee
Confidence 3444455667777677888889986644332 23322 23333332111 1233333333344577 334445555
Q ss_pred EcC-----CCCCeEEEEEeCCCCEEEEEEC---------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EE
Q 003556 97 LTG-----HRSNCISVDFHPFGEFFASGSL---------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SG 161 (811)
Q Consensus 97 l~~-----h~~~I~sl~fspdg~~Lasgs~---------Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~-sg 161 (811)
+.. .......-..+|+|+|++-.-. .|.++.|-... .+..+...-.--..++|+.+.+.++ +-
T Consensus 99 ~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 99 LFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred ccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEc
Confidence 321 1234556677899998443222 24455554321 1222222223345788988776655 44
Q ss_pred ECCCeEEEEE--CCCCe-----EEEEEecC---CC-CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe
Q 003556 162 GEDNTVKLWD--LTAGK-----LLHDFKCH---EG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (811)
Q Consensus 162 s~Dg~I~IwD--l~t~~-----~i~~~~~h---~~-~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I 230 (811)
+.+-.|.-|| +.+|. .+..++.. .. ..-.++..-.|++.++.-..++|...|..+|+.+.++......|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 5566787787 55543 34333321 11 12345556678888888889999999999999999998888999
Q ss_pred eEEEEecC-CCEEEEE
Q 003556 231 RCLTFNPD-GRTLLCG 245 (811)
Q Consensus 231 ~sl~fspd-g~~Lasg 245 (811)
++++|--. -..+++.
T Consensus 257 tsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEEecCCCccEEEEE
Confidence 99999633 2344443
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.069 Score=64.70 Aligned_cols=99 Identities=20% Similarity=0.359 Sum_probs=74.3
Q ss_pred cEEEEEECCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE-
Q 003556 30 RVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV- 107 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl- 107 (811)
..++.|++.|.|-..|.... .....-..-.++|++++|+.+|.+++.|-.+|.|.+||...++.++.+..|..+...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 45888888888888887432 2222223345899999999999999999999999999999999999888777665544
Q ss_pred --EEeCCCCEEEEEECCCcEEEEEC
Q 003556 108 --DFHPFGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 108 --~fspdg~~Lasgs~Dg~I~IwDl 130 (811)
.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 44445567888877776 4543
No 398
>PHA03098 kelch-like protein; Provisional
Probab=95.99 E-value=0.21 Score=58.88 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=91.1
Q ss_pred CCcEEEEEECCC------eEEEEECCCCceEEEecCC---CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeE
Q 003556 28 SSRVLVTGGEDH------KVNLWAIGKPNAILSLSGH---TSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKI 93 (811)
Q Consensus 28 ~~~lLatgs~Dg------~I~VWdl~t~~~~~~l~~h---~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~~ 93 (811)
++.+++.||.++ .+..||..+.+... +... ......+. -++.+++.||.+ ..+..||..+++.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456777776543 47778876655432 2211 11112222 256677777765 3577888876653
Q ss_pred EEE--EcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEEC
Q 003556 94 VRT--LTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSGGE 163 (811)
Q Consensus 94 v~~--l~~h~~~I~sl~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~~--~~h~~~I~si~fspdg~~L~sgs~ 163 (811)
... +....... +++. -++..++.|+.+ ..+..||..+.+-...- ...... .++.. .++..++.||.
T Consensus 371 ~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~ 446 (534)
T PHA03098 371 REEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGI 446 (534)
T ss_pred eeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCc
Confidence 321 11111111 2222 246666777632 35888998765432211 111111 12222 24566666664
Q ss_pred C--------CeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCe
Q 003556 164 D--------NTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (811)
Q Consensus 164 D--------g~I~IwDl~t~~~i~~--~~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~ 218 (811)
+ ..+.+||..+++-... +.........+. -++.+++.|+.+ +.|.+||..+.+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3 2378889877643221 111111111222 266777777654 467888877654
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.88 E-value=6.5 Score=48.12 Aligned_cols=282 Identities=13% Similarity=0.148 Sum_probs=151.9
Q ss_pred CCCCEEEEEEeeC--CCc---EEEEEECCCeEEEEEC-CCCceEEEe--cC--CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 15 HSSTVNCLKIGRK--SSR---VLVTGGEDHKVNLWAI-GKPNAILSL--SG--HTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 15 H~~~V~~lafsp~--~~~---lLatgs~Dg~I~VWdl-~t~~~~~~l--~~--h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (811)
-...|.|+.++|- +.+ +++.|..+..+.+.-. .+...+... .+ -...|.-..|-.+..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3468999999974 333 8888876665544433 333332221 11 224455666667788999999999988
Q ss_pred EEECC--CCeEEEEEc--CCCCCeEEEEEeCCC-------------------------------------------CEEE
Q 003556 85 LWDLE--EAKIVRTLT--GHRSNCISVDFHPFG-------------------------------------------EFFA 117 (811)
Q Consensus 85 IWDl~--t~~~v~~l~--~h~~~I~sl~fspdg-------------------------------------------~~La 117 (811)
-|.+. ++..-..-+ --..++.--.|+..+ ..++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 66553 332211100 011122211222111 1233
Q ss_pred EEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCeEEEEE
Q 003556 118 SGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGE-----------D---NTVKLWDLTAGKLLHDF 181 (811)
Q Consensus 118 sgs~Dg~I~IwDl~~~~--~i~~~~~h~~~I~si~fspdg~~L~sgs~-----------D---g~I~IwDl~t~~~i~~~ 181 (811)
++. .+.+.+.-+..-+ .++++. -......+++.+....+.+.+. . ..++++|-.+.+.+...
T Consensus 689 ~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 689 SAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred Eec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 332 2334444333211 122322 2234556677664333333321 1 24677777776655543
Q ss_pred ecCC----CCeEEEEEeCC-CCEEEEEE----------CCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEecCCCEEEE
Q 003556 182 KCHE----GQIQCIDFHPH-EFLLATGS----------ADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 182 ~~h~----~~V~sv~fspd-g~~Lasgs----------~Dg~I~IwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~Las 244 (811)
+... ..|.++.|..| +.++++|+ ..|.|.+|.+...+.+.....+ .+.+.++..- +|++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA- 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA- 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-
Confidence 3211 23566678888 77888886 2477888877663333332211 3444444322 465554
Q ss_pred EECCCEEEEEecCCceeeeeeccccceeEeee-cCCCEEEEEECCCeEEEEEecCCC
Q 003556 245 GLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (811)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~~ 300 (811)
|-...+++|+|...+.+..-......+..+.. -.|..+++|.--+.+.+-..+..+
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 55668999999998776665555555555544 578888888877777766555544
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=95.83 E-value=3.6 Score=45.53 Aligned_cols=148 Identities=12% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEE-EECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003556 101 RSNCISVDFHPFGEFFASGSLDTNLKI-WDIRKKGCIHTY-KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~Dg~I~I-wDl~~~~~i~~~-~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (811)
...+.++.+.+++.+++++ ..|.+.. +| ..++.-... ..-...++++.+.++++.++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568889999988776665 4565543 22 222222222 2334678999999998876654 5677654333444332
Q ss_pred EEEec----CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe---CCCCCCeeEEEEecCCCEEEEEECCCEE
Q 003556 179 HDFKC----HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHESLK 251 (811)
Q Consensus 179 ~~~~~----h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~---~~~~~~I~sl~fspdg~~Lasgs~d~I~ 251 (811)
..... ....+..+.|.+++.++++| .+|.+. .....++.-... .......+.+.|..+++.+++|..+.|-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 22221 12357889999988766555 566554 344444433222 2223457888888888888888766554
Q ss_pred EE
Q 003556 252 VF 253 (811)
Q Consensus 252 Vw 253 (811)
.|
T Consensus 327 ~~ 328 (334)
T PRK13684 327 RY 328 (334)
T ss_pred Ee
Confidence 44
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.77 E-value=1.8 Score=53.00 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC--------eEEEEEeC----------------CCCEEEEEECCCcEE
Q 003556 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN--------CISVDFHP----------------FGEFFASGSLDTNLK 126 (811)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~--------I~sl~fsp----------------dg~~Lasgs~Dg~I~ 126 (811)
+..|+.++.++.|.-.|..+|+.+..+...... +..+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988887632211 22233321 244788899999999
Q ss_pred EEECCCCeEEEEEecCCCCeE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCeEEEEE
Q 003556 127 IWDIRKKGCIHTYKGHTRGVN-------------AIRFTP--DGRWVVSGGE----------DNTVKLWDLTAGKLLHDF 181 (811)
Q Consensus 127 IwDl~~~~~i~~~~~h~~~I~-------------si~fsp--dg~~L~sgs~----------Dg~I~IwDl~t~~~i~~~ 181 (811)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887642 22110 111122 2345666643 688999999999999988
Q ss_pred ec
Q 003556 182 KC 183 (811)
Q Consensus 182 ~~ 183 (811)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 73
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.67 E-value=1.2 Score=45.92 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-C---------CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE-EEEEECCCcEEE
Q 003556 59 TSGIDSVSFDSSEVLVAAGAA-S---------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKI 127 (811)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~-D---------G~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~-Lasgs~Dg~I~I 127 (811)
....++-..+|+|+++ .|.. | |.++.|-.. ..+..+...-.--..++|+.+.+. .++-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3456677788999984 4433 1 334444321 112222212222356889877764 445566778877
Q ss_pred EE--CCCCe-----EEEEEecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC
Q 003556 128 WD--IRKKG-----CIHTYKGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (811)
Q Consensus 128 wD--l~~~~-----~i~~~~~h----~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fsp 195 (811)
|| ..+|. .+..++.. ...--.++...+|+..++.-..|+|..+|..+|+.+.+++.....|++++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 87 54443 33333321 11123455566889888888999999999999999999998899999999954
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.59 E-value=8.4 Score=47.24 Aligned_cols=278 Identities=14% Similarity=0.136 Sum_probs=146.0
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCC------CEEEEEECCCeEEEEEC-
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSE------VLVAAGAASGTIKLWDL- 88 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~l~fspdg------~~Lasgs~DG~I~IWDl- 88 (811)
.+++.+.+. +...++.++.++.+...++..+. ++... .....|.|+.++|-+ ++++.|.++..+.+.-.
T Consensus 489 ~~ti~~~~~-n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 489 KITIGVVSA-NASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred ceEEEEEee-cceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 344444444 33345666666777777775554 33222 234789999998742 27888887766554433
Q ss_pred CCCeEEEEE--c--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC--CCeEEEEEec--CCCCeEEEEEcCCC-----
Q 003556 89 EEAKIVRTL--T--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--KKGCIHTYKG--HTRGVNAIRFTPDG----- 155 (811)
Q Consensus 89 ~t~~~v~~l--~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~--~~~~i~~~~~--h~~~I~si~fspdg----- 155 (811)
.+...+... . .-...|.-.+|-.+..+|.++..||.+.-|-+. ++..-..-+. -..++.--.|+..+
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE
Confidence 333333222 1 122345566676677899999999998866543 3321110000 01111111111111
Q ss_pred --------------------------------------CEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeC
Q 003556 156 --------------------------------------RWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHP 195 (811)
Q Consensus 156 --------------------------------------~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~V~sv~fsp 195 (811)
..|+++ ..+.+++.-+..-+. ++++. -......+++.+
T Consensus 647 a~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~ 724 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE 724 (1096)
T ss_pred EeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheEecc
Confidence 122222 223333333322111 12222 233456677776
Q ss_pred CCCEEEEEECC--------------CeEEEEECCCCeEEEEeCCC----CCCeeEEEEecC-CCEEEEEEC---------
Q 003556 196 HEFLLATGSAD--------------RTVKFWDLETFELIGSAGPE----TSGVRCLTFNPD-GRTLLCGLH--------- 247 (811)
Q Consensus 196 dg~~Lasgs~D--------------g~I~IwDl~~~~~l~~~~~~----~~~I~sl~fspd-g~~Lasgs~--------- 247 (811)
...++++.+.. ..++++|-++++.+...... ...+.++.|..| +.++++|+.
T Consensus 725 ~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep 804 (1096)
T KOG1897|consen 725 SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEP 804 (1096)
T ss_pred cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCc
Confidence 44444443321 24778888888776654322 123455568888 788888752
Q ss_pred --CCEEEEEecCCceeeeee--ccccceeEeeecCCCEEEEEECCCeEEEEEecCCCc
Q 003556 248 --ESLKVFSWEPIRCHDAVD--VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 248 --d~I~Vwd~~~~~~~~~~~--~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
+.|.||.++....+..+. .-...+..+...+|+++|.- ...|++|+....+.
T Consensus 805 ~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 805 VNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERE 860 (1096)
T ss_pred ccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec--CcEEEEEEccccce
Confidence 348888887733333221 11223445566788887653 45789998888743
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.55 E-value=3.1 Score=44.18 Aligned_cols=144 Identities=16% Similarity=0.115 Sum_probs=89.3
Q ss_pred CeEEEEEeCCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCeEE
Q 003556 103 NCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD-LTAGKLL 178 (811)
Q Consensus 103 ~I~sl~fspdg~~Lasgs---~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwD-l~t~~~i 178 (811)
.+.+.++++++..++... ....++++... ....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999777665 33355555543 3232222 223678889999976655555555556663 3333322
Q ss_pred -EEEec--CCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEeCCCCCCeeEEEEecCCCEEE
Q 003556 179 -HDFKC--HEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLE---TF------ELIGSAGPETSGVRCLTFNPDGRTLL 243 (811)
Q Consensus 179 -~~~~~--h~~~V~sv~fspdg~~Lasgs---~Dg~I~IwDl~---~~------~~l~~~~~~~~~I~sl~fspdg~~La 243 (811)
..... ..+.|..+.++|||..+|... .++.|.+--+. .+ ..+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 12221 122899999999999888766 35677776543 23 11222223356789999999998888
Q ss_pred EEECCC
Q 003556 244 CGLHES 249 (811)
Q Consensus 244 sgs~d~ 249 (811)
.+....
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 765443
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.53 E-value=0.0089 Score=70.56 Aligned_cols=174 Identities=18% Similarity=0.285 Sum_probs=100.3
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECC--CCceEEE-----ecCCCCCeEEEEEcC---CCCEEEEEECCCe
Q 003556 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILS-----LSGHTSGIDSVSFDS---SEVLVAAGAASGT 82 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~--t~~~~~~-----l~~h~~~V~~l~fsp---dg~~Lasgs~DG~ 82 (811)
++..+.|-.+.|..-+...+. ..-|.+.||+++ .|+.... .......+.-+.|.| +..++..+..++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 455667777777542221122 333778999874 3333222 223334556666654 6678888888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs 162 (811)
|++.++..... ..+.+|...+..++|...|-.++.+ .+|||..|+.++
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEee
Confidence 99887765433 4455688777777766444222211 567777777777
Q ss_pred CCCeEEEEECC-----CCeEEEEEecCC-CCeEEEEEeCCC---------CEEEEEE-CCCeEEEEECCCCeEE
Q 003556 163 EDNTVKLWDLT-----AGKLLHDFKCHE-GQIQCIDFHPHE---------FLLATGS-ADRTVKFWDLETFELI 220 (811)
Q Consensus 163 ~Dg~I~IwDl~-----t~~~i~~~~~h~-~~V~sv~fspdg---------~~Lasgs-~Dg~I~IwDl~~~~~l 220 (811)
.||.++.|.+. ...+++.++.|. .+-.|.-|+.+. .++++++ .+..+++|....++++
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 77766665442 234555556555 232232243321 1344444 4567999998887776
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.034 Score=67.26 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=75.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003556 154 DGRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~s 232 (811)
.+.+++.|++.|.+...|+...-. ...-....++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 466899999999999999875421 1122224678999999999999999999999999999999988887766665554
Q ss_pred E---EEecCCCEEEEEECCCEEEEEec
Q 003556 233 L---TFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 233 l---~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
+ .+..++..++++..++ .+|...
T Consensus 178 vi~v~~t~~nS~llt~D~~G-sf~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGG-SFWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCC-ceEEEE
Confidence 4 4555666666664444 577653
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=0.013 Score=69.33 Aligned_cols=173 Identities=16% Similarity=0.295 Sum_probs=107.3
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEEEE-----EcCCCCCeEEEEEeC---CCCEEEEEECCC
Q 003556 55 LSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLE--EAKIVRT-----LTGHRSNCISVDFHP---FGEFFASGSLDT 123 (811)
Q Consensus 55 l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~--t~~~v~~-----l~~h~~~I~sl~fsp---dg~~Lasgs~Dg 123 (811)
+++..+.|-.+.|.. +...+. -.-|.+.|||+. .|+.... .......+.-+.|+| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456677888888832 211121 234678899875 3443222 222334445566665 455777888888
Q ss_pred cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003556 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (811)
Q Consensus 124 ~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg 203 (811)
.|++..+.+... ..+.+|...+..++|...|-.++.+ ++|||..++++
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWA 253 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEe
Confidence 888877654332 3455688888888876555332222 78999999999
Q ss_pred ECCCeEEEEECC-----CCeEEEEeCCCC-CCeeEEEEecC-------CC--EEEEEECC--CEEEEEecCCcee
Q 003556 204 SADRTVKFWDLE-----TFELIGSAGPET-SGVRCLTFNPD-------GR--TLLCGLHE--SLKVFSWEPIRCH 261 (811)
Q Consensus 204 s~Dg~I~IwDl~-----~~~~l~~~~~~~-~~I~sl~fspd-------g~--~Lasgs~d--~I~Vwd~~~~~~~ 261 (811)
+.||.+++|.+. .-.+++..++|. .+-.|.-|+.+ +. +++++++- .+++|.-.+.+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998888764 234556677776 34344334432 22 33444443 5999998888887
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=2.4 Score=45.27 Aligned_cols=168 Identities=11% Similarity=0.189 Sum_probs=109.5
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (811)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (811)
..+-...|.++.|+|+... |++......-.||=-..|+.+.++.-. -.....|.|..++.++++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3455566999999996554 555555566667766778888776521 13345688888898888888899999998875
Q ss_pred CeEEEEE-------c--CC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE---EEEEecC-------CCCeEEEE
Q 003556 91 AKIVRTL-------T--GH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC---IHTYKGH-------TRGVNAIR 150 (811)
Q Consensus 91 ~~~v~~l-------~--~h-~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~---i~~~~~h-------~~~I~si~ 150 (811)
...+..+ . .+ ......++|.|....|+.+-...-+.||.+..... +.....+ -..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5322111 1 12 45678899999999888888877777777653321 1111111 13467788
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003556 151 FTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (811)
Q Consensus 151 fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (811)
|++ .+..|+.+.+++.+.-.|.. |..+..+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 887 45566666677777777765 4434433
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.25 E-value=5 Score=42.58 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE-CCCCeE-
Q 003556 61 GIDSVSFDSSEVLVAAGA---ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD-IRKKGC- 135 (811)
Q Consensus 61 ~V~~l~fspdg~~Lasgs---~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwD-l~~~~~- 135 (811)
.+...++++++..++... ....+.++.. +.....+. ....+..-.|.+++...+....+....++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 3344555543 33333321 223677788999987777766666666663 233322
Q ss_pred EEEEecC--CCCeEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEEecCCCCeEEEEEeCCCCEEE
Q 003556 136 IHTYKGH--TRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLT---AG------KLLHDFKCHEGQIQCIDFHPHEFLLA 201 (811)
Q Consensus 136 i~~~~~h--~~~I~si~fspdg~~L~sgs---~Dg~I~IwDl~---t~------~~i~~~~~h~~~V~sv~fspdg~~La 201 (811)
....... ...|..++++|||..++... .++.|.+--+. .+ ............+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1122211 12799999999999888765 34667665432 22 11111112346789999999998877
Q ss_pred EEECCC
Q 003556 202 TGSADR 207 (811)
Q Consensus 202 sgs~Dg 207 (811)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776544
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.24 E-value=0.78 Score=53.50 Aligned_cols=181 Identities=13% Similarity=0.036 Sum_probs=88.1
Q ss_pred CCcEEEEEECCC-----eEEEEECCCCceEEEecCCCCCe-EEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEE--E
Q 003556 28 SSRVLVTGGEDH-----KVNLWAIGKPNAILSLSGHTSGI-DSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKIVRT--L 97 (811)
Q Consensus 28 ~~~lLatgs~Dg-----~I~VWdl~t~~~~~~l~~h~~~V-~~l~fspdg~~Lasgs~D--G~I~IWDl~t~~~v~~--l 97 (811)
++.++++||.++ .+..||..+.+....-.-..... .+++ .-++.+.+.||.+ ..+..||..+++.... +
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 556778887653 46778877655433211111111 1122 2366777777754 3578888766543321 1
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCC---cEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003556 98 TGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (811)
Q Consensus 98 ~~h~~~I~sl~fspdg~~Lasgs~Dg---~I~IwDl~~~~~i~~--~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl 172 (811)
....... +++ .-+|...+.|+.++ .+..||..+..-... +....... +++ .-+|+..+.| |.+.+||.
T Consensus 350 ~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecC
Confidence 1111111 222 22577777777654 466788876543221 11111111 222 2245555555 35678888
Q ss_pred CCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCe
Q 003556 173 TAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (811)
Q Consensus 173 ~t~~~i~~--~~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~ 218 (811)
.+++-... +....... +++ .-+|++.++|+.+ ..+..||..+.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 76543221 11111112 222 2366777777754 346666665543
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.23 E-value=0.51 Score=55.70 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEE--cCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeEE
Q 003556 70 SEVLVAAGAASG------TIKLWDLEEAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCI 136 (811)
Q Consensus 70 dg~~Lasgs~DG------~I~IWDl~t~~~v~~l--~~h~~~I~sl~fspdg~~Lasgs~D-----g~I~IwDl~~~~~i 136 (811)
++.+++.|+.++ .+..||..+.+....- .........+.+ ++..++.|+.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455667776543 5778888776653221 111112222222 46677777765 35778888765432
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---
Q 003556 137 HTYKG-HTRGVNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD--- 206 (811)
Q Consensus 137 ~~~~~-h~~~I~si~fspdg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~D--- 206 (811)
..-.. +...-.+++. -+++.++.||.+ ..+..||..+++-...-..........+...++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 11110 1111112222 256667777632 357889987654322111001111111222356677777643
Q ss_pred -----CeEEEEECCCCeE
Q 003556 207 -----RTVKFWDLETFEL 219 (811)
Q Consensus 207 -----g~I~IwDl~~~~~ 219 (811)
..+.+||..+.+-
T Consensus 451 ~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCcccceEEEecCCCCce
Confidence 2388899876553
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.19 E-value=0.053 Score=55.35 Aligned_cols=104 Identities=22% Similarity=0.275 Sum_probs=69.5
Q ss_pred CcEEEEEECCCeEEEEECCCCceEE-EecCCCCCeEEE-EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeE
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSV-SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCI 105 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~~-~l~~h~~~V~~l-~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-~~I~ 105 (811)
..-+++|+.+|.|++|+..-..... .+..-...|.++ .-..++.+.++++.+|.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3458899999999999986222111 111112233332 223456688999999999999999998888887777 5555
Q ss_pred EEEEeCCCCEEEEE--ECCCcEEEEECCC
Q 003556 106 SVDFHPFGEFFASG--SLDTNLKIWDIRK 132 (811)
Q Consensus 106 sl~fspdg~~Lasg--s~Dg~I~IwDl~~ 132 (811)
.+.....+++++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555556666666 6677777777653
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.03 E-value=7.7 Score=43.52 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=82.7
Q ss_pred eEEEEecC--CCCEEEEEEeeCCCcEEEEEE-----------CCC-eEEEEECCC--Cc--eEEEecCCCCCeEEEEEcC
Q 003556 8 KLQEFVAH--SSTVNCLKIGRKSSRVLVTGG-----------EDH-KVNLWAIGK--PN--AILSLSGHTSGIDSVSFDS 69 (811)
Q Consensus 8 ki~~~~~H--~~~V~~lafsp~~~~lLatgs-----------~Dg-~I~VWdl~t--~~--~~~~l~~h~~~V~~l~fsp 69 (811)
++.-+-.. -.....|+|.+ .++++++-. ..+ .|.+++-.+ ++ ....+...-.....++|.+
T Consensus 3 ~~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~ 81 (367)
T TIGR02604 3 KVTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV 81 (367)
T ss_pred EEEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec
Confidence 44444433 35678899998 566555532 223 777776532 32 2233333334568899998
Q ss_pred CCCEEEEEECCCeEEEE-ECCCC-----e--EE-EEEcC----CCCCeEEEEEeCCCCEEEEEEC---------------
Q 003556 70 SEVLVAAGAASGTIKLW-DLEEA-----K--IV-RTLTG----HRSNCISVDFHPFGEFFASGSL--------------- 121 (811)
Q Consensus 70 dg~~Lasgs~DG~I~IW-Dl~t~-----~--~v-~~l~~----h~~~I~sl~fspdg~~Lasgs~--------------- 121 (811)
++ +++ +... .|..| |.... + .+ ..+.. +......++|.|+|.+.++-+.
T Consensus 82 ~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 82 GG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred CC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence 88 444 4444 44444 54311 2 12 22322 1344678999999986554431
Q ss_pred ----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003556 122 ----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (811)
Q Consensus 122 ----Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs 162 (811)
.|.|.-+|...++....-.++ .....++|+++|+++++-.
T Consensus 159 ~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666554432222232 3456899999998876644
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.00 E-value=8.4 Score=43.83 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=57.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCC-----------------CC-EEEE
Q 003556 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPH-----------------EF-LLAT 202 (811)
Q Consensus 142 h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-V~sv~fspd-----------------g~-~Las 202 (811)
....+.+++.+|++++.++...-|.|.++|+.++..++.+++.... +.-+..... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3445789999999998888877799999999999888888765432 111111110 11 3334
Q ss_pred EECCCeEEEEECCCCeEEEEeC
Q 003556 203 GSADRTVKFWDLETFELIGSAG 224 (811)
Q Consensus 203 gs~Dg~I~IwDl~~~~~l~~~~ 224 (811)
+-..|.|-||+++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5568899999999888776654
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.87 E-value=0.86 Score=52.58 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCcEEEEEE--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC----CEEEEEECCCeEEEEECC--
Q 003556 18 TVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE----VLVAAGAASGTIKLWDLE-- 89 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs--~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg----~~Lasgs~DG~I~IWDl~-- 89 (811)
+|..++|.- |..++.|.- .+|.+++ .+...+..| ..|..+.|.|-+ ..+++.-....|.+|-+.
T Consensus 21 PvhGlaWTD-GkqVvLT~L~l~~gE~kf---Gds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWTD-GKQVVLTDLQLHNGEPKF---GDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEecC-CCEEEEEeeeeeCCcccc---CCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 688899973 666666653 3344333 223334333 468899998853 245555678899999985
Q ss_pred ---CCeEEEEEcCCC-C----CeEEEEEeCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEE
Q 003556 90 ---EAKIVRTLTGHR-S----NCISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTPDGRWVV 159 (811)
Q Consensus 90 ---t~~~v~~l~~h~-~----~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~--~~i~~~~~h~~~I~si~fspdg~~L~ 159 (811)
.++.+..-..+- . --..+.|||....|++-.....-.+++++.. .....++ ..+.|.|.+|.+||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEE
Confidence 233332222111 1 1235779999988887776665556666533 3334444 467799999999999887
Q ss_pred EEE-CCCeEEEEECCC
Q 003556 160 SGG-EDNTVKLWDLTA 174 (811)
Q Consensus 160 sgs-~Dg~I~IwDl~t 174 (811)
++- ..=.-++||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 663 333467898543
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.71 E-value=9.9 Score=43.25 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003556 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (811)
Q Consensus 186 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~ 227 (811)
..+.+++.+|++.+.|+...=|.|.++|+..+..+..+++..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 457889999999999998778999999999988877766653
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.63 E-value=10 Score=43.16 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=94.0
Q ss_pred EEEEEEee-----CCCcEEEEEECCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcC----CCCEEEEEECCCeEE
Q 003556 19 VNCLKIGR-----KSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDS----SEVLVAAGAASGTIK 84 (811)
Q Consensus 19 V~~lafsp-----~~~~lLatgs~Dg~I~VWdl~t~~-----~~~~l~~h~~~V~~l~fsp----dg~~Lasgs~DG~I~ 84 (811)
..|++..+ ++...+++|+..|.++||+..... .+.+. .-..+|..++.-. .+...++.-.-..+.
T Consensus 22 ~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~ 100 (418)
T PF14727_consen 22 QGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLS 100 (418)
T ss_pred CceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEE
Confidence 34555443 355689999999999999984432 22222 2457888887632 233333335678888
Q ss_pred EEECCC-------Ce--EEEEEcCCC--CCeEEEEEeCCC-----CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE
Q 003556 85 LWDLEE-------AK--IVRTLTGHR--SNCISVDFHPFG-----EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148 (811)
Q Consensus 85 IWDl~t-------~~--~v~~l~~h~--~~I~sl~fspdg-----~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~s 148 (811)
+|.+.. +. .+..+..|. .....+++-|.| .+|.+-+.||.+.+|+-+.......+.. ---...
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP 179 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP 179 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC
Confidence 888721 11 122222232 234455555533 4788999999999999765443333332 222335
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEC
Q 003556 149 IRFTPDGRWVVSGGEDNTVKLWDL 172 (811)
Q Consensus 149 i~fspdg~~L~sgs~Dg~I~IwDl 172 (811)
+.|.+.-..|++++.+..+..|..
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecH
Confidence 678887788999988888888865
No 418
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.55 E-value=11 Score=42.90 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-----
Q 003556 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL--HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----- 218 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i--~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~----- 218 (811)
...+...++|.+++.+.....++-||- +... ..-......++.+.|.+++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344566778877766654433344543 2221 1112234568999999999887766 456543 3444443
Q ss_pred EEEEeCC--CCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeee---ccccceeEeeecCCCEEEEEECCCeEEE
Q 003556 219 LIGSAGP--ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD---VGWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (811)
Q Consensus 219 ~l~~~~~--~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~---~~~~~i~~l~~~dg~lLasg~~Dg~V~I 293 (811)
.+..... ....+..+.|.+++..+++|..+. .+...+.++...... .-...++.+.+.+.....+.+.+|.|--
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~-v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGI-LLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCc-EEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 2222221 224589999999998888885553 333344444433322 1123466777655455555567777654
Q ss_pred E
Q 003556 294 W 294 (811)
Q Consensus 294 W 294 (811)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 419
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.41 E-value=9.3 Score=41.66 Aligned_cols=227 Identities=9% Similarity=-0.003 Sum_probs=115.4
Q ss_pred cEEEEEECCCeEEEEECCC--CceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-------------
Q 003556 30 RVLVTGGEDHKVNLWAIGK--PNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEEAKI------------- 93 (811)
Q Consensus 30 ~lLatgs~Dg~I~VWdl~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~t~~~------------- 93 (811)
++|+.|+++| +++.++.. .+..+.+ +...|+++...+..+.|++-+ ....++.+++..-..
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 6899999999 55666654 2233322 456899999988777665544 344599999842221
Q ss_pred --EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC----eEEEEE---e-cCCCCeEEEEEcCC--CCEEEE
Q 003556 94 --VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK----GCIHTY---K-GHTRGVNAIRFTPD--GRWVVS 160 (811)
Q Consensus 94 --v~~l~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~IwDl~~~----~~i~~~---~-~h~~~I~si~fspd--g~~L~s 160 (811)
....-+|...+..+++..... .++++.....|.++..... .....+ . ....++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 111223444444444443222 3444445566766543321 111110 0 01123333333332 457778
Q ss_pred EECCCeEEEEECCC--CeEEE---E--EecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEeCCCCCCe
Q 003556 161 GGEDNTVKLWDLTA--GKLLH---D--FKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGPETSGV 230 (811)
Q Consensus 161 gs~Dg~I~IwDl~t--~~~i~---~--~~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l--~~~~~~~~~I 230 (811)
|+..+...++++.. ..... . ..... .++.... -+++.+|++- |....+.|....... ..+. -...+
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~-w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLCY--DEFGVFVNLYGKRRSRNPILH-WEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEEE--CcEEEEEeCCCCccccceEEE-cCCcc
Confidence 87653334444432 11000 0 11111 3333333 3445455543 444556665531111 1121 13345
Q ss_pred eEEEEecCCCEEEEEECCCEEEEEecCCceeeeee
Q 003556 231 RCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 265 (811)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (811)
.++++. ..+|++-..+.|.|+++.++...+.+.
T Consensus 247 ~~~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 247 ESFAYH--SPYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEE--CCEEEEEcCCcEEEEECCCCceEEEEe
Confidence 677776 457877778899999999887666554
No 420
>PHA02790 Kelch-like protein; Provisional
Probab=93.99 E-value=2.3 Score=49.64 Aligned_cols=183 Identities=11% Similarity=0.032 Sum_probs=88.5
Q ss_pred CCEEEEEECCC-----cEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEec
Q 003556 113 GEFFASGSLDT-----NLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAGKLLHDFKC 183 (811)
Q Consensus 113 g~~Lasgs~Dg-----~I~IwDl~~~~~i~~--~~~h~~~I~si~fspdg~~L~sgs~Dg--~I~IwDl~t~~~i~~~~~ 183 (811)
+..+++|+.++ .+..||..++..... +....... +++ .-+|...+.||.++ .+..||..+++-.. ...
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 45567776543 477788877653321 11111111 222 23567777777543 57788876653222 111
Q ss_pred CCCCe-EEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCc
Q 003556 184 HEGQI-QCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR 259 (811)
Q Consensus 184 h~~~V-~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~ 259 (811)
...+. ......-+|.+.+.|+.++ .+..||.++.+-..........-...+..-+|++.+.|+ ...+|+.++.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~ 426 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--NAEFYCESSNT 426 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--ceEEecCCCCc
Confidence 11111 1112223677778877653 477888876543322111101011112233566666653 35667765443
Q ss_pred eeeeeeccccc-eeEeeecCCCEEEEEECC-----CeEEEEEecCCC
Q 003556 260 CHDAVDVGWSR-LSDLNVHEGKLLGCSYNQ-----SCVGVWVVDISR 300 (811)
Q Consensus 260 ~~~~~~~~~~~-i~~l~~~dg~lLasg~~D-----g~V~IWdvd~~~ 300 (811)
=...-+..... -..+...+|++.++|+.+ ..|..||.++.+
T Consensus 427 W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 427 WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 22222222111 123445788888888754 345566655543
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.89 E-value=14 Score=41.84 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=93.1
Q ss_pred CCCEEEEEE-CCCeEEEEECC----CCeEEEEEcC---CC----CCeEEEEEeCCCCEEEEEE--C----CCcEEEEECC
Q 003556 70 SEVLVAAGA-ASGTIKLWDLE----EAKIVRTLTG---HR----SNCISVDFHPFGEFFASGS--L----DTNLKIWDIR 131 (811)
Q Consensus 70 dg~~Lasgs-~DG~I~IWDl~----t~~~v~~l~~---h~----~~I~sl~fspdg~~Lasgs--~----Dg~I~IwDl~ 131 (811)
+.++|+..+ .++.|+|+|+. ..++.+++.. +. ..-..+-.-|+|+.++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455776666 68899999987 3455555542 11 1122334456888777742 2 2468889988
Q ss_pred CCeEEEEEecCC---CCeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEEecCCC--
Q 003556 132 KKGCIHTYKGHT---RGVNAIRFTPDGRWVVSGGE--------------------DNTVKLWDLTAGKLLHDFKCHEG-- 186 (811)
Q Consensus 132 ~~~~i~~~~~h~---~~I~si~fspdg~~L~sgs~--------------------Dg~I~IwDl~t~~~i~~~~~h~~-- 186 (811)
+.+.+..+.... ..-..+.|.|..+.+++... ...+.+||+.+.+.++.+.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888887776432 33567788888888887632 45799999999999999885432
Q ss_pred CeEEEEEeCC--CCEE-EEEECCCeEEEE-ECCCCe----EEEEeCCC-----------------CCCeeEEEEecCCCE
Q 003556 187 QIQCIDFHPH--EFLL-ATGSADRTVKFW-DLETFE----LIGSAGPE-----------------TSGVRCLTFNPDGRT 241 (811)
Q Consensus 187 ~V~sv~fspd--g~~L-asgs~Dg~I~Iw-Dl~~~~----~l~~~~~~-----------------~~~I~sl~fspdg~~ 241 (811)
....+.|..+ ..+= +.+.-.+.|..| ....++ .+..+... ..-|+.|..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777654 3332 222234444444 334433 22222211 234799999999999
Q ss_pred EEEEECC--CEEEEEecC
Q 003556 242 LLCGLHE--SLKVFSWEP 257 (811)
Q Consensus 242 Lasgs~d--~I~Vwd~~~ 257 (811)
|++++-. .++.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 9988654 599999864
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.62 E-value=2.5 Score=47.42 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCC
Q 003556 60 SGIDSVSFDSSEVLVAAGA-----------ASG-TIKLWDLEE--AK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs-----------~DG-~I~IWDl~t--~~--~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg 123 (811)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456789999998776643 223 677776532 32 223343333456789999888 44444444
Q ss_pred cEEEE-ECCC-------CeEE-EEEec----CCCCeEEEEEcCCCCEEEEEECC-------------------CeEEEEE
Q 003556 124 NLKIW-DIRK-------KGCI-HTYKG----HTRGVNAIRFTPDGRWVVSGGED-------------------NTVKLWD 171 (811)
Q Consensus 124 ~I~Iw-Dl~~-------~~~i-~~~~~----h~~~I~si~fspdg~~L~sgs~D-------------------g~I~IwD 171 (811)
|..| |... .+.+ ..+.. +......++|.|||.+.++-+.. |.|.-+|
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 5444 5432 1112 22322 12347789999999876655421 4566666
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE
Q 003556 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS 204 (811)
Q Consensus 172 l~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs 204 (811)
...++.. .+...-.....++|+|+|.++++-.
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 6554432 2322223356889999988876644
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=0.48 Score=58.02 Aligned_cols=142 Identities=12% Similarity=0.117 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeE-----EEEEcC------CCCCeEEEEEeCCCC-EEEEEECCCcE
Q 003556 60 SGIDSVSFDSSEVLVAAG--AASGTIKLWDLEEAKI-----VRTLTG------HRSNCISVDFHPFGE-FFASGSLDTNL 125 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasg--s~DG~I~IWDl~t~~~-----v~~l~~------h~~~I~sl~fspdg~-~Lasgs~Dg~I 125 (811)
-+|..+...+|+...++. +.+-.|..||+++-.. ..-+.. ...-..++.|.|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 355556666676654443 3334788999865321 111111 223456788888544 46777788988
Q ss_pred EEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCCCEE
Q 003556 126 KIWDIRKKGC-IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLL 200 (811)
Q Consensus 126 ~IwDl~~~~~-i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~----h~~~V~sv~fspdg~~L 200 (811)
.+..+..... +..+. .....++++|+|.|+.+++|-..|++.-|... .+....+.+ ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 8887653322 22222 45668999999999999999999999888754 333333322 24679999998876666
Q ss_pred EEE
Q 003556 201 ATG 203 (811)
Q Consensus 201 asg 203 (811)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
No 424
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=12 Score=40.01 Aligned_cols=271 Identities=10% Similarity=0.032 Sum_probs=147.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---e
Q 003556 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---K 92 (811)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~ 92 (811)
.+-+..+.++. .+++.+..+.-++|.|+.+......+..-.-.=..-.|.-.|++..++..|.-+.+.|+.+. .
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34455666653 45666767777999999776554433321111123334446888888886666778888654 3
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 93 ~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
....+.........++.+ |++-..+..|+-+.+.|+.... .+..+. ....+.++..+++-.+++.. +--+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEE
Confidence 444444444445667777 8888888889999999997543 333333 23367888777654444433 444566
Q ss_pred EECCCCeEEEEEecC-CCCeEEE-EEeCCCCEEEEEECCCeEEEEECCCCe---EEEEeCCCCCCeeEEEEecCCCEEEE
Q 003556 170 WDLTAGKLLHDFKCH-EGQIQCI-DFHPHEFLLATGSADRTVKFWDLETFE---LIGSAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 170 wDl~t~~~i~~~~~h-~~~V~sv-~fspdg~~Lasgs~Dg~I~IwDl~~~~---~l~~~~~~~~~I~sl~fspdg~~Las 244 (811)
-|..+.+....+... ...+.++ .|.-.+.+......+.-+-+-|+.+.. +...+......-..+..+ |.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 777665543333321 1122222 233345556665556666666665422 111222222233344333 445555
Q ss_pred EECCCEEEEEecCCceeeeeecccccee-EeeecCCCEEEEEECCCeEEEEEe
Q 003556 245 GLHESLKVFSWEPIRCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~~~i~-~l~~~dg~lLasg~~Dg~V~IWdv 296 (811)
+..+...+.+..+.+........-.... +-.+-+.+.+.....++-+.||+.
T Consensus 316 adkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 5555555555554433332221111111 111234457778888888888875
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=0.62 Score=57.14 Aligned_cols=179 Identities=11% Similarity=0.018 Sum_probs=105.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC----------------eEEEEEcCCC-CCeEEEEEeCCCCEEEEE--ECCCc
Q 003556 64 SVSFDSSEVLVAAGAASGTIKLWDLEEA----------------KIVRTLTGHR-SNCISVDFHPFGEFFASG--SLDTN 124 (811)
Q Consensus 64 ~l~fspdg~~Lasgs~DG~I~IWDl~t~----------------~~v~~l~~h~-~~I~sl~fspdg~~Lasg--s~Dg~ 124 (811)
.++.++.-.++++++..+.+.++...+. ....++..|. -.|..+...+|+...++. +.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3455555555556666665665543211 0112222232 244555556676654433 33447
Q ss_pred EEEEECCCCeEE-----EEEec------CCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEE
Q 003556 125 LKIWDIRKKGCI-----HTYKG------HTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCI 191 (811)
Q Consensus 125 I~IwDl~~~~~i-----~~~~~------h~~~I~si~fspdg-~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~V~sv 191 (811)
|+.||++....- .-++. ......++.|.|.- ...+....|+.|++..+..... ...+. .....+++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav 204 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV 204 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence 889999754321 11111 22345678888842 2345666788888877654322 22222 34568999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC----CCCCeeEEEEecCCCEEEE
Q 003556 192 DFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~----~~~~I~sl~fspdg~~Las 244 (811)
+|+|.|+.+++|-..|++.-|-.. ++....+.. ....|.+|+|-....++++
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 999999999999999999988654 332222211 1467999999987777764
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.36 E-value=15 Score=40.53 Aligned_cols=225 Identities=16% Similarity=0.182 Sum_probs=113.5
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce---EEEec----CCCCCeEEEEEcCC----CCEEEEEECC------
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA---ILSLS----GHTSGIDSVSFDSS----EVLVAAGAAS------ 80 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~---~~~l~----~h~~~V~~l~fspd----g~~Lasgs~D------ 80 (811)
..+.|+|.|+ +++++ +...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pd-G~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETT-SCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCC-CcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4678999995 66555 56699999999 33433 33331 23467899999994 3333333321
Q ss_pred --CeEEEEECCCC-------e-EEEEEcC---CCCCeEEEEEeCCCCEEEEEECCC-------------cEEEEECCCC-
Q 003556 81 --GTIKLWDLEEA-------K-IVRTLTG---HRSNCISVDFHPFGEFFASGSLDT-------------NLKIWDIRKK- 133 (811)
Q Consensus 81 --G~I~IWDl~t~-------~-~v~~l~~---h~~~I~sl~fspdg~~Lasgs~Dg-------------~I~IwDl~~~- 133 (811)
..|.-|.+..+ + ++..+.. .......|.|.|+|.++++.+..+ .|.-.+....
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24555555433 1 1222222 234556799999997655554333 2332332211
Q ss_pred -------------eEEEEEecCCCCeEEEEEcCC-CCEEEEE-ECCCeEEEEECCCC-----------------------
Q 003556 134 -------------GCIHTYKGHTRGVNAIRFTPD-GRWVVSG-GEDNTVKLWDLTAG----------------------- 175 (811)
Q Consensus 134 -------------~~i~~~~~h~~~I~si~fspd-g~~L~sg-s~Dg~I~IwDl~t~----------------------- 175 (811)
..+. -.++. ....++|+|. |.++++= +.++.=.|.-+..|
T Consensus 160 p~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0010 01222 2457899998 5544321 22222222222211
Q ss_pred ------eEEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEECCCCeEEE---E-eCCCCCCeeEEEEecC
Q 003556 176 ------KLLHDFKCHEGQIQCIDFHP-------HEFLLATGSADRTVKFWDLETFELIG---S-AGPETSGVRCLTFNPD 238 (811)
Q Consensus 176 ------~~i~~~~~h~~~V~sv~fsp-------dg~~Lasgs~Dg~I~IwDl~~~~~l~---~-~~~~~~~I~sl~fspd 238 (811)
..+..+. +...+..+.|.. .|.++++....+.|....+.....+. . +......+..+++.||
T Consensus 238 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 1222233 234566677764 34566666666788888887543322 1 2334447899999999
Q ss_pred CCEEEEEECC
Q 003556 239 GRTLLCGLHE 248 (811)
Q Consensus 239 g~~Lasgs~d 248 (811)
|.++++...+
T Consensus 317 G~Lyv~~d~~ 326 (331)
T PF07995_consen 317 GALYVSDDSD 326 (331)
T ss_dssp SEEEEEE-TT
T ss_pred CeEEEEECCC
Confidence 9877766533
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.31 E-value=3.5 Score=50.20 Aligned_cols=92 Identities=15% Similarity=0.298 Sum_probs=54.7
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003556 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (811)
Q Consensus 103 ~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (811)
.|..|.++|+|.+++..|..| |.|..+.. ...-..+.+-...|.|-.+.-+..+ + .
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---------------------~-~ 142 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---------------------F-T 142 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---------------------c-c
Confidence 577888999999998888766 55555532 1111223322233333222211111 1 0
Q ss_pred ecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEECCCC
Q 003556 182 KCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETF 217 (811)
Q Consensus 182 ~~h~~~V~sv~fspd---g~~Lasgs~Dg~I~IwDl~~~ 217 (811)
......|..+.|||. +..|++-+.|+++++||+...
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 113456788889986 578888888999999998653
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.28 E-value=2.8 Score=49.91 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEe--CCCCEEEEEECCCeEEEEECC------
Q 003556 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFH--PHEFLLATGSADRTVKFWDLE------ 215 (811)
Q Consensus 145 ~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~V~sv~fs--pdg~~Lasgs~Dg~I~IwDl~------ 215 (811)
...-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|..+.|. |+|..+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555555554455679999999887554433 246789999886 578888888888999998532
Q ss_pred ---CCeEEEEe--CCC-CCCeeEEEEecCCCEEEEEECCCEEEEE
Q 003556 216 ---TFELIGSA--GPE-TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (811)
Q Consensus 216 ---~~~~l~~~--~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (811)
.+.++..+ ..+ ..+|.+..|.++| .|++|+++.+.||+
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSGNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeCCEEEEEC
Confidence 22333332 223 3678999999998 45556677777775
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.05 E-value=1.1 Score=50.54 Aligned_cols=138 Identities=13% Similarity=0.152 Sum_probs=92.2
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CeEEE--EEec--
Q 003556 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTA-GKLLH--DFKC-- 183 (811)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~-------~L~sgs~Dg~I~IwDl~t-~~~i~--~~~~-- 183 (811)
+..|.....++-.|++.|+.+..+..|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+. +++.
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 344556677888999999999999877764 577887432 234455566666667663 32222 2221
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 184 HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 184 h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
......+..-. ...++|+++..|.|++||--...-...+.+.+..|..+..+.+|+++++.+...+.+.++.
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 11122222222 3348999999999999996544334445666788999999999999999988887776654
No 430
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.05 E-value=18 Score=40.47 Aligned_cols=150 Identities=16% Similarity=0.070 Sum_probs=91.1
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CC
Q 003556 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RG 145 (811)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~--~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~-~~ 145 (811)
-+++ ++++..+|.|.-.|.+++..+.....-. ..+..-.+..+|+ ++.++.+|.++.+|.+++..+..+.... ..
T Consensus 67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3444 4555789999999999988665433221 2222223333554 8888889999999998999998887655 11
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC---CeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEE
Q 003556 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELI 220 (811)
Q Consensus 146 I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~l 220 (811)
+..-..-.++ .++.++.+|.+...|..+|+....+..... .+..--. .....++.+.. ++.+.-.|..+|...
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111122233 444444789999999999998877654221 1111111 12234555554 566777788777776
Q ss_pred EE
Q 003556 221 GS 222 (811)
Q Consensus 221 ~~ 222 (811)
..
T Consensus 223 w~ 224 (370)
T COG1520 223 WS 224 (370)
T ss_pred ee
Confidence 55
No 431
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.02 E-value=18 Score=40.44 Aligned_cols=192 Identities=15% Similarity=0.046 Sum_probs=113.4
Q ss_pred EEEEEECCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeEEE
Q 003556 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCISV 107 (811)
Q Consensus 31 lLatgs~Dg~I~VWdl~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-~~I~sl 107 (811)
.++++..+|.|.-.|..++..+.....- ...+..-.+..+|+ |+.++.+|.+..+|..+|+.+....... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3566678888888898888876543322 12222223333665 6778889999999998999888877555 111111
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe
Q 003556 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR---GVNAIRFTPDGRWVVSGGE--DNTVKLWDLTAGKLLHDFK 182 (811)
Q Consensus 108 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~---~I~si~fspdg~~L~sgs~--Dg~I~IwDl~t~~~i~~~~ 182 (811)
..-.+ ..+..++.++.+...|..++..+..+..... .+..--.. ....++.+.. ++.+.-+|..+|......+
T Consensus 149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 12212 2344444789999999998988777653221 11111111 2234555555 6678888888888777643
Q ss_pred cC----CCCeEEEEEeCC-----CCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003556 183 CH----EGQIQCIDFHPH-----EFLLATGSADRTVKFWDLETFELIGSAGP 225 (811)
Q Consensus 183 ~h----~~~V~sv~fspd-----g~~Lasgs~Dg~I~IwDl~~~~~l~~~~~ 225 (811)
.+ ...+........ +.-+..++.++.+...|..+++.+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 21 111100101111 12345667788888899999998877765
No 432
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.90 E-value=0.33 Score=37.32 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=30.3
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCce
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA 51 (811)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~ 51 (811)
.....|.+++|+| ...+||.|..+|.|.+|.+ +++.
T Consensus 9 ~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456799999999 6789999999999999998 4544
No 433
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.83 E-value=0.29 Score=37.61 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=30.1
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (811)
Q Consensus 185 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 219 (811)
...|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=4.4 Score=48.16 Aligned_cols=194 Identities=9% Similarity=0.147 Sum_probs=102.7
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--E--cCCCCCeEEEEEeCCCCE
Q 003556 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT--L--TGHRSNCISVDFHPFGEF 115 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~--l--~~h~~~I~sl~fspdg~~ 115 (811)
.|+||++ +|..+..+.-....+..+.|+.+..+|+. ..+|++++|++-.. .+.. . ......|..+.|..+|
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-eccceEEEeecchh-hhcccccccccccCceeEEEEecCc--
Confidence 4777775 36666555544458889999988876654 78999999997532 2222 1 2223345555555455
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEc--CCCC---EEEEEE-CCCeEEEEECCCC-eEEEEEecCCCC
Q 003556 116 FASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFT--PDGR---WVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEGQ 187 (811)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~~i~~~~~h-~~~I~si~fs--pdg~---~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~~ 187 (811)
+++-..+|.+.+..-.....++++..- .....+.+|. +++. .++-.. ..+. .++-.... .....+....+.
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCCCce
Confidence 333344565655442222233333321 1111112221 2211 111110 0010 11111111 111222222466
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEecCC
Q 003556 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDG 239 (811)
Q Consensus 188 V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~-~~~I~sl~fspdg 239 (811)
+..+..+|+..+|+.-..+|.|.+-+....+.+..+... ..+...++|..+.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 888999999999999999999999988877766655422 2333467777554
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.29 E-value=1.4 Score=50.00 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=94.1
Q ss_pred cCCCCEEE-EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-------EEEEEECCCcEEEEECCCCe-EEEE
Q 003556 68 DSSEVLVA-AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-------FFASGSLDTNLKIWDIRKKG-CIHT 138 (811)
Q Consensus 68 spdg~~La-sgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~-------~Lasgs~Dg~I~IwDl~~~~-~i~~ 138 (811)
..+..+|+ .|+.-..++--|++.|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+-.. .+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 33444444 4555677888899999999999977765 577888542 23445456667767766432 2211
Q ss_pred --Eec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 139 --YKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 139 --~~~--h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
.+. ......+..-. ...++++|+..|-|++||.-.......+.+....|..+..+.+|.++++.+. .++.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 111 11222233222 3458999999999999996544444445666788999999999998887774 57888887
Q ss_pred C
Q 003556 215 E 215 (811)
Q Consensus 215 ~ 215 (811)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.23 E-value=4.7 Score=48.03 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=74.3
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC-----
Q 003556 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFT--PDGRWVVSGGEDNTVKLWDLT----- 173 (811)
Q Consensus 102 ~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-~h~~~I~si~fs--pdg~~L~sgs~Dg~I~IwDl~----- 173 (811)
..+.-+.-+.-++.-++-+....+.|||.+.+.....-. ...+.|.++.|. |+|..+++.|..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555545554555555689999999887543332 346789999986 589999999999999998542
Q ss_pred C----CeEEEEEe--cC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 174 A----GKLLHDFK--CH-EGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 174 t----~~~i~~~~--~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
. ...+..+. .+ ..+|....|.++|.+++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 12333332 23 3679999999999766554 457888874
No 437
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.67 E-value=25 Score=38.87 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=42.9
Q ss_pred CCcEEEEEECC-CeEEEEECCCCc-eEEEecCCC--CCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCe
Q 003556 28 SSRVLVTGGED-HKVNLWAIGKPN-AILSLSGHT--SGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDLEEAK 92 (811)
Q Consensus 28 ~~~lLatgs~D-g~I~VWdl~t~~-~~~~l~~h~--~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl~t~~ 92 (811)
++.+.++|+.. ..+.++|+.... .-..+.... .........-++++.+.|+.+ ..+..||..+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 45666666643 456677763221 111222111 111111112356677777653 247778887765
Q ss_pred EEEEEcCCCCCeE--EEEEeCCCCEEEEEECC
Q 003556 93 IVRTLTGHRSNCI--SVDFHPFGEFFASGSLD 122 (811)
Q Consensus 93 ~v~~l~~h~~~I~--sl~fspdg~~Lasgs~D 122 (811)
-...-........ +.+..-+++..+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4332111111111 11112357777777754
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.63 E-value=28 Score=39.49 Aligned_cols=140 Identities=13% Similarity=0.132 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCEEEEEECCCcEE-EEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----
Q 003556 104 CISVDFHPFGEFFASGSLDTNLK-IWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---- 176 (811)
Q Consensus 104 I~sl~fspdg~~Lasgs~Dg~I~-IwDl~~~~~--i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~---- 176 (811)
...+...+++.+++.+.. |.+. -||- +.. ...-......+..+.|.+++..++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 344556677777776654 4433 3442 221 11112234568899999998877665 566644 3334443
Q ss_pred -EEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe---CCCCCCeeEEEEecCCCEEEEEECCCE
Q 003556 177 -LLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHESL 250 (811)
Q Consensus 177 -~i~~~~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~---~~~~~~I~sl~fspdg~~Lasgs~d~I 250 (811)
....... ....+..+.|.+++..+++| .+|.+... ...++.-... ..-...++.+.|.++++.+++|.++.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1222221 12358899999887766655 56766555 3444432222 233456889999888888888866543
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.60 E-value=23 Score=38.36 Aligned_cols=163 Identities=18% Similarity=0.283 Sum_probs=95.6
Q ss_pred eEEEEECCCCeEEEEEcCC------CCCeEEEEEeCCC-----CEEEEEE-CCCcEEEEECCCCeEEEEEec--------
Q 003556 82 TIKLWDLEEAKIVRTLTGH------RSNCISVDFHPFG-----EFFASGS-LDTNLKIWDIRKKGCIHTYKG-------- 141 (811)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h------~~~I~sl~fspdg-----~~Lasgs-~Dg~I~IwDl~~~~~i~~~~~-------- 141 (811)
+|.+||+.+++.++++.-. .+.+..+.+.... .++..+. ..+.|.++|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 7889999999988887532 3456777777632 2333333 345899999998876544432
Q ss_pred -----------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEECC-----CC---------eEEEEEecCCCCeEEEEE
Q 003556 142 -----------HTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLT-----AG---------KLLHDFKCHEGQIQCIDF 193 (811)
Q Consensus 142 -----------h~~~I~si~fsp---dg~~L~sgs~Dg~I~IwDl~-----t~---------~~i~~~~~h~~~V~sv~f 193 (811)
....+..++.+| +|++|+-....+. ++|-+. +. ..+..+.........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 122366677765 6677776654443 233221 11 112222212246677889
Q ss_pred eCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEec--CCCEEEEE
Q 003556 194 HPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNP--DGRTLLCG 245 (811)
Q Consensus 194 spdg~~Lasgs~Dg~I~IwDl~~------~~~l~~~~~~~~~I~sl~fsp--dg~~Lasg 245 (811)
+++|.++++--..+.|..|+..+ .+.+..-...-..+..+.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999999999999999886 123332222245678888888 66554443
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=12 Score=38.19 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=98.0
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEE-EECCCcEEEEECCCCeEEEEEecCCCCe
Q 003556 70 SEVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS-GSLDTNLKIWDIRKKGCIHTYKGHTRGV 146 (811)
Q Consensus 70 dg~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Las-gs~Dg~I~IwDl~~~~~i~~~~~h~~~I 146 (811)
++.++.+.+. ...|++||+.+++.+....-....+..=-...-|+++.. .-.+|.-..||.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4566666554 347999999999987765432222222111222444333 3357888899999888887765 33344
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CC---CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HE---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (811)
Q Consensus 147 ~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~---~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~ 221 (811)
+.++. |+..|+.+.....++.-|..+......+.. .. ..++.+.|- +|.+.|-.-.+..|-..|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55543 455577665556677777665433332221 11 223444443 45555555455556666666666555
Q ss_pred EeC------------CCCCCeeEEEEecCC-CEEEEE
Q 003556 222 SAG------------PETSGVRCLTFNPDG-RTLLCG 245 (811)
Q Consensus 222 ~~~------------~~~~~I~sl~fspdg-~~Lasg 245 (811)
.+. .+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 432 223456788999887 455555
No 441
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.80 E-value=29 Score=38.00 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEcCCCCCe--EEEEEeCCCCEEEEEEC-----CCcEEEEECCCCe
Q 003556 70 SEVLVAAGAAS-----GTIKLWDLEEAKI---VRTLTGHRSNC--ISVDFHPFGEFFASGSL-----DTNLKIWDIRKKG 134 (811)
Q Consensus 70 dg~~Lasgs~D-----G~I~IWDl~t~~~---v~~l~~h~~~I--~sl~fspdg~~Lasgs~-----Dg~I~IwDl~~~~ 134 (811)
++.+++.|+.+ ..+..||+.+.+. ...+..-.... .+++.. ++..++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777654 3567777766553 12222111111 122222 4566666664 2358888987654
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEECCCe----EEEEECCCCe
Q 003556 135 CIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDNT----VKLWDLTAGK 176 (811)
Q Consensus 135 ~i~~--~~~h~~~I~si~fspdg~~L~sgs~Dg~----I~IwDl~t~~ 176 (811)
-... +... ......+..-+++.++.|+.++. +.+||..+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3221 1111 11122222335677777776542 5678887654
No 442
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=10 Score=38.60 Aligned_cols=172 Identities=12% Similarity=0.123 Sum_probs=98.7
Q ss_pred CCcEEEEEECC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCe
Q 003556 28 SSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNC 104 (811)
Q Consensus 28 ~~~lLatgs~D--g~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~l~~h~~~I 104 (811)
++.++.+.+.- ..|++||+.+++.+.+..-....+..=-...-+.++ ...-.+|.-..+|..+.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 55666666543 469999999998887654321111111111112222 223468888999999888887776 33444
Q ss_pred EEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--CC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003556 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--HT---RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (811)
Q Consensus 105 ~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~--h~---~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (811)
+.++- +++.|+.++...+++.-|..+.....++.- .. ..++.+.|- ||...+-.-.+..|...|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45443 466677776666777777765443333221 11 123334443 55555544455566666777777665
Q ss_pred EEe------------cCCCCeEEEEEeCCC-CEEEEE
Q 003556 180 DFK------------CHEGQIQCIDFHPHE-FLLATG 203 (811)
Q Consensus 180 ~~~------------~h~~~V~sv~fspdg-~~Lasg 203 (811)
.+. .+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 543 133457788999986 555555
No 443
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.69 E-value=19 Score=41.84 Aligned_cols=267 Identities=16% Similarity=0.097 Sum_probs=131.6
Q ss_pred CCCCEEEEEEeeCCCcEEEEEECCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
-..+|..+.+.-. + .+.+|+.|| +..||..+++.+..-.... .+|..+..+-++. +.+|+.+| |.+.+.+....
T Consensus 163 ~d~~V~aLv~D~~-g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 163 KDTPVVALVFDAN-G-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred cCccceeeeeecc-C-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccc
Confidence 3457778888763 3 477888888 7788888887776554433 5677776666665 55667666 77777655222
Q ss_pred EEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCC--CCeEEEEEcCCCCEEEEEECCCeEEE
Q 003556 94 VRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHT--RGVNAIRFTPDGRWVVSGGEDNTVKL 169 (811)
Q Consensus 94 v~~l~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-~~~~~h~--~~I~si~fspdg~~L~sgs~Dg~I~I 169 (811)
...... ....|..+.-..+ .++..|+..|..+ +....+... ...+.|. ..|.++....+|. |.+++.+|.+++
T Consensus 238 sn~~~~lp~~~I~ll~qD~q-G~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~ 314 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQ-GELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRY 314 (671)
T ss_pred cccCCCCcchheeeeecccC-CCEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEE
Confidence 211111 1223333333322 3567777776433 233333222 2222222 3456666666665 677777766665
Q ss_pred EECCCCeEEEEEecCCC-CeEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEecCCCEEEEE
Q 003556 170 WDLTAGKLLHDFKCHEG-QIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 170 wDl~t~~~i~~~~~h~~-~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasg 245 (811)
-+-. ......+....+ .+..++..| .+..+-....-|.+.+-+-.++..+... ......|+.+++..+|..-+..
T Consensus 315 ~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs 393 (671)
T COG3292 315 LTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS 393 (671)
T ss_pred ecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe
Confidence 4432 222222222111 111112222 1111222222233444444455544432 2233557777777766655555
Q ss_pred ECCCEEEEEecC-Cceeeeeec-cccceeEeee-cCCCEEEEEECCCeE
Q 003556 246 LHESLKVFSWEP-IRCHDAVDV-GWSRLSDLNV-HEGKLLGCSYNQSCV 291 (811)
Q Consensus 246 s~d~I~Vwd~~~-~~~~~~~~~-~~~~i~~l~~-~dg~lLasg~~Dg~V 291 (811)
..+++.-|+-+. .-.++.... ..+.+..+.. ++++ |..|..+|.+
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeE
Confidence 555777777665 222222222 2233333333 4455 5666666654
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=11 Score=45.18 Aligned_cols=178 Identities=12% Similarity=0.111 Sum_probs=87.8
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE--E--ecCCCCeEEEEEcCCC
Q 003556 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--Y--KGHTRGVNAIRFTPDG 155 (811)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--~--~~h~~~I~si~fspdg 155 (811)
--.|+||+. +|..+..+.-....+..+.|+.+. .|++...+|++++|++-.. .+.. . ......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc
Confidence 345778875 466665555444578889999654 5666779999999998532 2222 1 2223345555555455
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCC---EEEEEE-CCCeEEEEECCCC-eEEEEeCCCC
Q 003556 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEF---LLATGS-ADRTVKFWDLETF-ELIGSAGPET 227 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~V~sv~fspdg~---~Lasgs-~Dg~I~IwDl~~~-~~l~~~~~~~ 227 (811)
- +.-..+|.+.+-.-.....+..+.. ...+-.|-...+++. .++-.. ..+ ..++-.... .....+....
T Consensus 140 V--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 140 V--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred e--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 3 3334455554443222222233322 111112222222211 111111 111 111111111 1112222224
Q ss_pred CCeeEEEEecCCCEEEEEEC-CCEEEEEecCCceeee
Q 003556 228 SGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDA 263 (811)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~ 263 (811)
+.+..+..||++++|+.=.+ +.+.+-+.+..++.-.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 56788899999999986544 4566666666555433
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.86 E-value=13 Score=43.39 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred EEEEE---ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---e
Q 003556 73 LVAAG---AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG---V 146 (811)
Q Consensus 73 ~Lasg---s~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~---I 146 (811)
+++.. ...+...++|. .|.+...+.........+.+.++|.+++... ..++.+|+- |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 34566677774 4556555543222221266778888776655 789999985 6666665532221 3
Q ss_pred EEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCeEEEEEec--C----C---------------------C
Q 003556 147 NAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAGKLLHDFKC--H----E---------------------G 186 (811)
Q Consensus 147 ~si~fspdg~~L~sgs~-------------Dg~I~IwDl~t~~~i~~~~~--h----~---------------------~ 186 (811)
+.+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. | . -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 46778899999988872 22466777 78888777542 1 0 1
Q ss_pred CeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003556 187 QIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (811)
Q Consensus 187 ~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~ 228 (811)
.++++.+.+ ++.+|+++-.-..|...|.++++....+..+..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 278999999 555666665566899999999998888776643
No 446
>PLN02193 nitrile-specifier protein
Probab=89.84 E-value=28 Score=40.49 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=90.5
Q ss_pred CCcEEEEEECC-------CeEEEEECCCCceEEEecCC---CC--CeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 003556 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLSGH---TS--GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEE 90 (811)
Q Consensus 28 ~~~lLatgs~D-------g~I~VWdl~t~~~~~~l~~h---~~--~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t 90 (811)
++.+++.|+.+ ..+.+||+.+.+... +... .. ........-++.+++.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 44566667643 247778876654432 2110 01 11111112245666677654 3588899887
Q ss_pred CeEEEEEcC----CCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCC
Q 003556 91 AKIVRTLTG----HRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPDGR 156 (811)
Q Consensus 91 ~~~v~~l~~----h~~~I~sl~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~i~~~~-----~h~~~I~si~fspdg~ 156 (811)
.+....-.. ....-.+++. -+++.++.|+.++ .+..||+.+.+-...-. ...... .++. -+++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gk 330 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGK 330 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCc
Confidence 654332111 1111112222 2456666776543 46778887654321110 011111 2222 2567
Q ss_pred EEEEEECC----CeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEECC--------------CeEEEEECC
Q 003556 157 WVVSGGED----NTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSAD--------------RTVKFWDLE 215 (811)
Q Consensus 157 ~L~sgs~D----g~I~IwDl~t~~~i~~~~~---h~~~V~sv~fspdg~~Lasgs~D--------------g~I~IwDl~ 215 (811)
.++.++.+ ..+.+||+.+.+-...-.. ........+..-++++++.|+.+ ..+.+||+.
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 77777755 4588999987654322111 01111111222356677777743 246777777
Q ss_pred CCeE
Q 003556 216 TFEL 219 (811)
Q Consensus 216 ~~~~ 219 (811)
+.+-
T Consensus 411 t~~W 414 (470)
T PLN02193 411 TLQW 414 (470)
T ss_pred cCEE
Confidence 6543
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.61 E-value=12 Score=35.46 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=72.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC--------eEEEEEcCCCCCeEEEEEeC-----CCCEEEEEECCCcEEEEEC
Q 003556 64 SVSFDSSEVLVAAGAASGTIKLWDLEEA--------KIVRTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDI 130 (811)
Q Consensus 64 ~l~fspdg~~Lasgs~DG~I~IWDl~t~--------~~v~~l~~h~~~I~sl~fsp-----dg~~Lasgs~Dg~I~IwDl 130 (811)
.-.|......|++++..|+|.|++.... ..+..+. ....|++++-.+ ..+.|+.|+. ..|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456666667888889999999987633 2344454 556777776554 2346777765 56999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003556 131 RKKGCIHTYKGHTRGVNAIRFTP----DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (811)
Q Consensus 131 ~~~~~i~~~~~h~~~I~si~fsp----dg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (811)
....-+..-. -...|.++.+-. +..++++ +-+..|.-||....+..++.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 8776554333 346688887743 2334444 44666777776655554443
No 448
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=17 Score=44.88 Aligned_cols=250 Identities=15% Similarity=0.051 Sum_probs=118.0
Q ss_pred CCcEEEEEECCCeEEEEECCCCceEE---E------ec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 28 SSRVLVTGGEDHKVNLWAIGKPNAIL---S------LS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~t~~~~~---~------l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (811)
-++.+..|+.+|.+.+|.+.....-. . +. -+..+|..+...+...++++- .|+.|.++++.+.+....
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~ 103 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPS 103 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccccccc
Confidence 34579999999999999985432111 1 11 134677777766665555554 477788888876554221
Q ss_pred EcCCCCCeEEEEEe--C--CC--CEEEEEECC--CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003556 97 LTGHRSNCISVDFH--P--FG--EFFASGSLD--TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (811)
Q Consensus 97 l~~h~~~I~sl~fs--p--dg--~~Lasgs~D--g~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~ 168 (811)
.. +-..+...++. + .| .+.++.+.. .....|+-+.+-.+..--+......+++|. |..++++-.+....
T Consensus 104 ~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~i 180 (877)
T KOG2063|consen 104 GT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYI 180 (877)
T ss_pred cc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEE
Confidence 11 11111111111 1 12 233333321 222344443333333222223333344443 55555555444444
Q ss_pred EEECCCCeEEEEEe-cC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEecCCCEEEE
Q 003556 169 LWDLTAGKLLHDFK-CH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 169 IwDl~t~~~i~~~~-~h--~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~-~~~~~~~~I~sl~fspdg~~Las 244 (811)
+|.-.++.....+. +. ...-..+.-..++..++.| .|+...+-|........ .+.- ......+.+ +..|+++
T Consensus 181 i~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~w-s~~P~~v~~--~~PYlIa 256 (877)
T KOG2063|consen 181 INNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVW-SEVPLSVVV--ESPYLIA 256 (877)
T ss_pred EecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEe-cccchhhcc--cCceEEE
Confidence 44444442111111 10 1112234444566556665 56667777744322110 0000 011122222 4668887
Q ss_pred EECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEE
Q 003556 245 GLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSY 286 (811)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~ 286 (811)
-.+..+.||+..+..+.+.+. ..+....+...++..+.+..
T Consensus 257 ~~~~~veI~s~~~~qlvQSI~-~~~~~~~l~s~~~~i~~~~~ 297 (877)
T KOG2063|consen 257 LLDRSVEIRSKLDGQLVQSIT-PLSNGRSLLSAHNGIIFVAS 297 (877)
T ss_pred EccccEEEEeccCHHHhhccc-cccccceeeecCCcEEEEEe
Confidence 777799999999887666653 33333344443444444444
No 449
>PLN02153 epithiospecifier protein
Probab=89.59 E-value=37 Score=37.45 Aligned_cols=186 Identities=15% Similarity=0.185 Sum_probs=88.8
Q ss_pred CCcEEEEEECC-------CeEEEEECCCCceEEEec-CCCC-----CeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 003556 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLS-GHTS-----GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLE 89 (811)
Q Consensus 28 ~~~lLatgs~D-------g~I~VWdl~t~~~~~~l~-~h~~-----~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~ 89 (811)
++.+++.|+.+ ..+.+||..+.+....-. +... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45677777753 257888887654432111 0000 1222222 45667777653 357888987
Q ss_pred CCeEEEE--EcC---CCCC-eEEEEEeCCCCEEEEEECC-----------CcEEEEECCCCeEEEEEecC-----CCCeE
Q 003556 90 EAKIVRT--LTG---HRSN-CISVDFHPFGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGH-----TRGVN 147 (811)
Q Consensus 90 t~~~v~~--l~~---h~~~-I~sl~fspdg~~Lasgs~D-----------g~I~IwDl~~~~~i~~~~~h-----~~~I~ 147 (811)
+.+.... +.. .... -.+++. -+++.++.|+.+ ..|.+||..+.+-.. +... ...-.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~ 187 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA 187 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc
Confidence 7654321 110 1111 112222 245666776653 247788887654322 1111 11111
Q ss_pred EEEEcCCCCEEEEEECC-------------CeEEEEECCCCeEEEEEe-c--CCCCeEEEEEeCCCCEEEEEECC-----
Q 003556 148 AIRFTPDGRWVVSGGED-------------NTVKLWDLTAGKLLHDFK-C--HEGQIQCIDFHPHEFLLATGSAD----- 206 (811)
Q Consensus 148 si~fspdg~~L~sgs~D-------------g~I~IwDl~t~~~i~~~~-~--h~~~V~sv~fspdg~~Lasgs~D----- 206 (811)
+++. -+++.++.++.+ ..+.+||+.+.+-...-. + ........+...++.+++.|+..
T Consensus 188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLK 266 (341)
T ss_pred eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccc
Confidence 2222 245666655432 357888887664332111 0 01111111222356777777742
Q ss_pred ---------CeEEEEECCCCe
Q 003556 207 ---------RTVKFWDLETFE 218 (811)
Q Consensus 207 ---------g~I~IwDl~~~~ 218 (811)
+.|..||+.+.+
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccEEEEEcCccE
Confidence 257788876654
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.33 E-value=35 Score=36.88 Aligned_cols=163 Identities=13% Similarity=0.196 Sum_probs=93.2
Q ss_pred eEEEEECCCCceEEEecC------CCCCeEEEEEcCCC-----CEEEEEE-CCCeEEEEECCCCeEEEEEcCCC------
Q 003556 40 KVNLWAIGKPNAILSLSG------HTSGIDSVSFDSSE-----VLVAAGA-ASGTIKLWDLEEAKIVRTLTGHR------ 101 (811)
Q Consensus 40 ~I~VWdl~t~~~~~~l~~------h~~~V~~l~fspdg-----~~Lasgs-~DG~I~IWDl~t~~~v~~l~~h~------ 101 (811)
+|.+||+.+++.++.+.- ..+.+..+.+.... .+++.+. ..+-|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 799999999998887653 23567788886522 2444443 34689999999998877765322
Q ss_pred -------------CCeEEEEEeC---CCCEEEEEECCCcEEEEECC-----CC---------eEEEEEecCCCCeEEEEE
Q 003556 102 -------------SNCISVDFHP---FGEFFASGSLDTNLKIWDIR-----KK---------GCIHTYKGHTRGVNAIRF 151 (811)
Q Consensus 102 -------------~~I~sl~fsp---dg~~Lasgs~Dg~I~IwDl~-----~~---------~~i~~~~~h~~~I~si~f 151 (811)
..+..++.+| +++.|..+...+ -++|.+. +. ..+..+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1244445444 444455444333 1222221 10 011222111235667889
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC----eEEEEEecC--CCCeEEEEEeC--CCCEEEEE
Q 003556 152 TPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCH--EGQIQCIDFHP--HEFLLATG 203 (811)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h--~~~V~sv~fsp--dg~~Lasg 203 (811)
+++|..+++--..+.|..||.... ......... -..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999998888889999999998861 211122222 24678888888 66554444
No 451
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.77 E-value=13 Score=44.60 Aligned_cols=91 Identities=14% Similarity=0.331 Sum_probs=55.5
Q ss_pred EEEEEcCCCCEEEEEECCCe-----EEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003556 147 NAIRFTPDGRWVVSGGEDNT-----VKLWDLTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (811)
Q Consensus 147 ~si~fspdg~~L~sgs~Dg~-----I~IwDl~t~~~i~~~~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 218 (811)
..+.|-|.|..+++-+.||. |.++.. +|-.-..+. +....+..++|+-....++.+. .+.|.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceE
Confidence 34789999999998876653 444442 222111121 1233456677776665555544 4679999888766
Q ss_pred EEEEeCCCCCCeeEEEEecCC
Q 003556 219 LIGSAGPETSGVRCLTFNPDG 239 (811)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg 239 (811)
..-...-.-..+.-+.|+|..
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEeecCCCcceeeecccc
Confidence 444433334557788999964
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.75 E-value=0.79 Score=51.08 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=105.6
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-EEEe-cCCC----CeE-EEEEcCCCCEEEEEECCCe
Q 003556 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYK-GHTR----GVN-AIRFTPDGRWVVSGGEDNT 166 (811)
Q Consensus 94 v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-~~~~-~h~~----~I~-si~fspdg~~L~sgs~Dg~ 166 (811)
++.+......+..+-..|+|+.+..-+. ..+.++++.+...- .++- ...+ .|+ .+..-..|.-++++..||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 3444455567778889999997766654 67888887654321 1111 1111 122 1222335667888899998
Q ss_pred EEEE-ECCCCe-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCC
Q 003556 167 VKLW-DLTAGK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (811)
Q Consensus 167 I~Iw-Dl~t~~-----~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (811)
|.-| |.+.+. .++.++.....+..+.-..+.+-+++-+.+|++..+.....+.+-... .-..+.-+++||.+.
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccc
Confidence 8766 555332 233333333444444333345567777788888877655444433222 223567889999999
Q ss_pred EEEEEECCCEEEEEecCCceeeeeeccccc
Q 003556 241 TLLCGLHESLKVFSWEPIRCHDAVDVGWSR 270 (811)
Q Consensus 241 ~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~ 270 (811)
+|++-..++++++.++.....-.+..-|.+
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~PeiswsaLWqk 400 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPEISWSALWQK 400 (733)
T ss_pred hheeecCCceEEEEecCCCCCccHHHhhhh
Confidence 999988889999999876654444444443
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.72 E-value=50 Score=37.77 Aligned_cols=142 Identities=11% Similarity=0.158 Sum_probs=88.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCCCCeEEEEEeCC----C-CEEEEEECCCcEEEEECCC--Ce---
Q 003556 70 SEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHRSNCISVDFHPF----G-EFFASGSLDTNLKIWDIRK--KG--- 134 (811)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~~~I~sl~fspd----g-~~Lasgs~Dg~I~IwDl~~--~~--- 134 (811)
+...|++|+..|.++||+..... .+... .-..+|..+..-.. . ..||+ -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999985433 22222 24567887776531 2 24444 4556788887731 11
Q ss_pred ----EEEEEecCC--CCeEEEEEcC----C-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003556 135 ----CIHTYKGHT--RGVNAIRFTP----D-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (811)
Q Consensus 135 ----~i~~~~~h~--~~I~si~fsp----d-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasg 203 (811)
.+..+..|. .....+++-| . ..++++-+.||.+.+|+-+.-.....+.. ---...+.|.+.-..|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 122222233 2344455444 2 36788999999999999665433333332 2223456788888889999
Q ss_pred ECCCeEEEEEC
Q 003556 204 SADRTVKFWDL 214 (811)
Q Consensus 204 s~Dg~I~IwDl 214 (811)
+.+..|.-|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 88888888865
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=12 Score=47.40 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=106.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC-CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS-NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~-~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~ 138 (811)
.....++|++...+++.|..+|.|+++-...-+.......... .+..+.|-...........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4566789999999999999999999997654333332221111 11112222111222333334445555443222111
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEE-EEeCCCCEEEEEECCCeEEEEECCC
Q 003556 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEGQIQCI-DFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 139 ~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~~V~sv-~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
+...+++....+--.+ +.+ ..+.+++||..-...... +.......... .+.+...-+..--.+-.-..|.+..
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 189 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLPD 189 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeeccc
Confidence 2233444443333334 555 788888888653211110 01000000000 0111000000000010111111111
Q ss_pred CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeeecCCCEEEEEECCCeEEEEEe
Q 003556 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~lLasg~~Dg~V~IWdv 296 (811)
-. ..+..+..++.+..+......+..+....+-+|+..+......+.... .+...++..++++..||.+.+||+
T Consensus 190 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~h~Dgs~~fWd~ 263 (993)
T KOG1983|consen 190 AY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG----QLESRDGSHFVSYHTDGSYAFWDV 263 (993)
T ss_pred cc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc----ccCccCCceEEEEEecCCEEeeec
Confidence 11 122233445555555555555555544445555544332222221111 111467889999999999999999
Q ss_pred cCCCceee
Q 003556 297 DISRIEPY 304 (811)
Q Consensus 297 d~~~~~p~ 304 (811)
+.+.....
T Consensus 264 s~g~~~~~ 271 (993)
T KOG1983|consen 264 SSGKLQIA 271 (993)
T ss_pred CCCceeec
Confidence 99877443
No 455
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.31 E-value=17 Score=42.28 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC---eEEEEEeCCC
Q 003556 37 EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN---CISVDFHPFG 113 (811)
Q Consensus 37 ~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~---I~sl~fspdg 113 (811)
..+...++|. +|.....+.........+.+.++|.+++... +.+..+|+. |+.+..+...... -..+.+.|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 4456667774 4666655553222222266778998886654 889999985 6665555422211 2457788999
Q ss_pred CEEEEEEC-------------CCcEEEEECCCCeEEEEEec--CC-------------------------CCeEEEEEcC
Q 003556 114 EFFASGSL-------------DTNLKIWDIRKKGCIHTYKG--HT-------------------------RGVNAIRFTP 153 (811)
Q Consensus 114 ~~Lasgs~-------------Dg~I~IwDl~~~~~i~~~~~--h~-------------------------~~I~si~fsp 153 (811)
++|+.+.. .-.|..+| .+|+.+..+.. |- -.+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98887772 12466777 77877776531 10 1378899998
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q 003556 154 -DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE 185 (811)
Q Consensus 154 -dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~ 185 (811)
++..++++-.-..|...|.++++....+..+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 44444554445588999988998888776544
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.29 E-value=29 Score=38.26 Aligned_cols=143 Identities=19% Similarity=0.301 Sum_probs=85.9
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCc------EEEEECCC--C--eEEE-----EEecCCC--------CeEEEEEcCCCCE
Q 003556 101 RSNCISVDFHPFGEFFASGSLDTN------LKIWDIRK--K--GCIH-----TYKGHTR--------GVNAIRFTPDGRW 157 (811)
Q Consensus 101 ~~~I~sl~fspdg~~Lasgs~Dg~------I~IwDl~~--~--~~i~-----~~~~h~~--------~I~si~fspdg~~ 157 (811)
-+.++.+.+.+++..+++.+.+|. ++.+++.. + ..+. .+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899876667777777787 66666543 1 1111 1111111 3447888778887
Q ss_pred EEEEECC------CeEEEEECCCCeEEEEEe---------------cCCCCeEEEEEeCCCCEEEEEECCC-------e-
Q 003556 158 VVSGGED------NTVKLWDLTAGKLLHDFK---------------CHEGQIQCIDFHPHEFLLATGSADR-------T- 208 (811)
Q Consensus 158 L~sgs~D------g~I~IwDl~t~~~i~~~~---------------~h~~~V~sv~fspdg~~Lasgs~Dg-------~- 208 (811)
+++.-.+ ..|+.++.. |+.+..+. ......-+++++|+|..|+++.+.. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788888876 66554441 1234578999999999776665322 1
Q ss_pred ------EEE--EECCC-CeE----EEEeCC-----CCCCeeEEEEecCCCEEEE
Q 003556 209 ------VKF--WDLET-FEL----IGSAGP-----ETSGVRCLTFNPDGRTLLC 244 (811)
Q Consensus 209 ------I~I--wDl~~-~~~----l~~~~~-----~~~~I~sl~fspdg~~Las 244 (811)
++| ||..+ ++. ...+.. ....|..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 344 44443 222 222222 3456788888888876664
No 457
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.12 E-value=50 Score=37.08 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCcEEEEEEC-CCeEEEEECCCC-ceEEEecC-C-CCCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCe
Q 003556 28 SSRVLVTGGE-DHKVNLWAIGKP-NAILSLSG-H-TSGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDLEEAK 92 (811)
Q Consensus 28 ~~~lLatgs~-Dg~I~VWdl~t~-~~~~~l~~-h-~~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl~t~~ 92 (811)
++.+++.|+. +..+.++|+... ..-..+.. . ..........-++.+.+.|+.. ..+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 4455554543 455777787532 11122221 1 1111111122356666777653 247788887765
Q ss_pred EEEEEcCCCCCe--EEEEEeCCCCEEEEEECC
Q 003556 93 IVRTLTGHRSNC--ISVDFHPFGEFFASGSLD 122 (811)
Q Consensus 93 ~v~~l~~h~~~I--~sl~fspdg~~Lasgs~D 122 (811)
....-....... .+....-++..++.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 433211111111 112221356777777754
No 458
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.27 E-value=48 Score=35.96 Aligned_cols=218 Identities=15% Similarity=0.173 Sum_probs=123.3
Q ss_pred CEEEEEEeeCCCcEEEEEECCCeEEEEECC------CCce-EEEecC-----CCCCeEEEEEcCCCC------------E
Q 003556 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPNA-ILSLSG-----HTSGIDSVSFDSSEV------------L 73 (811)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~I~VWdl~------t~~~-~~~l~~-----h~~~V~~l~fspdg~------------~ 73 (811)
.-+.|+|+| .+.+-++....+...+||.. ..+. +..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 467899999 56666666677899999985 2222 233331 234577788864333 3
Q ss_pred EEEEECCCeEEEEECCCCeE-----EEEEc-CCCCCe-EEEEEeCC--CCEEEEE-ECCCcEEEEECCCCeEE--EEEec
Q 003556 74 VAAGAASGTIKLWDLEEAKI-----VRTLT-GHRSNC-ISVDFHPF--GEFFASG-SLDTNLKIWDIRKKGCI--HTYKG 141 (811)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~-----v~~l~-~h~~~I-~sl~fspd--g~~Lasg-s~Dg~I~IwDl~~~~~i--~~~~~ 141 (811)
++.++.||+|.-|...-+.. ...+. .....| ..+++... +++|..+ -..++|-+||-.-.+.. ..+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56778999999998532211 12222 112233 34455433 4555444 35788888875422211 00110
Q ss_pred C----------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeC------CC
Q 003556 142 H----------------TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHP------HE 197 (811)
Q Consensus 142 h----------------~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~V~sv~fsp------dg 197 (811)
. .-.|+-..-.++++.=+.|---|.|-+||+. |..++.+.. .-..-+.|+..| .+
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 0 0001111112222222333345789999975 677777742 223457777766 36
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeCCCC------CCeeEEEEec
Q 003556 198 FLLATGSADRTVKFWDLETFELIGSAGPET------SGVRCLTFNP 237 (811)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~------~~I~sl~fsp 237 (811)
.+|+---.||+|..||..+++.+..+.... ..++.|.|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677777789999999999998887765432 2345666654
No 459
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.16 E-value=34 Score=39.03 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.2
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 185 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
...|.++...+..++|++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999889999999999999999974
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.99 E-value=0.082 Score=59.21 Aligned_cols=144 Identities=10% Similarity=0.187 Sum_probs=98.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEe-
Q 003556 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYK- 140 (811)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~~~- 140 (811)
....|-+.+.-++.++.+..+..||- .++...... .......++|..+++. ++.+-..+.+++||+.+...- .+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence 34567777777888888999999994 344444433 4556678889888875 444566789999999754321 111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003556 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (811)
Q Consensus 141 ~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 210 (811)
+-...-.-+.|++.+..++.+...|.+.||+..+.+.+-....|...+++++|.+.+ +.+.++.|..+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~ 183 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS 183 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence 111111226788888889999999999999988776665555578889999999876 444454454433
No 461
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.91 E-value=54 Score=36.12 Aligned_cols=143 Identities=18% Similarity=0.322 Sum_probs=86.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--eEEE-----EEcCCCC--------CeEEEEEeCCCCEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGT------IKLWDLEE--A--KIVR-----TLTGHRS--------NCISVDFHPFGEFF 116 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~------I~IWDl~t--~--~~v~-----~l~~h~~--------~I~sl~fspdg~~L 116 (811)
+.+..|.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56778888865555666677777 66555543 1 1111 1111111 34478887788888
Q ss_pred EEEECC------CcEEEEECCCCeEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCC----------
Q 003556 117 ASGSLD------TNLKIWDIRKKGCIHTYK---------------GHTRGVNAIRFTPDGRWVVSGGEDN---------- 165 (811)
Q Consensus 117 asgs~D------g~I~IwDl~~~~~i~~~~---------------~h~~~I~si~fspdg~~L~sgs~Dg---------- 165 (811)
++.-.+ ..|+.++.. +..+..+. ......-+++++|+|+.|+++.+..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 777667 788888876 55544431 1345688999999999777664422
Q ss_pred ------eEEEEECCC-CeEEEEE--ec-------CCCCeEEEEEeCCCCEEEEE
Q 003556 166 ------TVKLWDLTA-GKLLHDF--KC-------HEGQIQCIDFHPHEFLLATG 203 (811)
Q Consensus 166 ------~I~IwDl~t-~~~i~~~--~~-------h~~~V~sv~fspdg~~Lasg 203 (811)
.|..||..+ ++....+ .. ....|..+.+.+++.+|+.=
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 234455554 3222222 21 24668899999999877653
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.81 E-value=59 Score=36.50 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEECC
Q 003556 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGV--NAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 112 dg~~Lasgs~D-----------g~I~IwDl~~~~~i~~~~~h~~~I--~si~fspdg~~L~sgs~D 164 (811)
++..++.|+.. ..+..||..+..-...-....... .+....-+++.++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46666777643 247788887654332111011111 112221367777777754
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.31 E-value=58 Score=35.91 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCeEE--EEEcCCCCEEEEEECC
Q 003556 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGVNA--IRFTPDGRWVVSGGED 164 (811)
Q Consensus 112 dg~~Lasgs~D-----------g~I~IwDl~~~~~i~~~~~h~~~I~s--i~fspdg~~L~sgs~D 164 (811)
++...+.|+.+ ..+..||..+..-...-......... ....-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 46667777653 24777888765433221111111111 1112367777777754
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.25 E-value=44 Score=34.44 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=81.6
Q ss_pred CEEEEEECCCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC------eEEEE-ECCCC----eEEE-
Q 003556 114 EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN------TVKLW-DLTAG----KLLH- 179 (811)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~--~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg------~I~Iw-Dl~t~----~~i~- 179 (811)
+.|+.+...+.|.+|++. ....+.+|.. -+.|..+.++..|++|++--.+. .+++| +++.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 555555667889999998 3445666663 47899999999999999874432 55664 22211 1111
Q ss_pred EEec---------------------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EE-----Ee-----CCC-
Q 003556 180 DFKC---------------------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IG-----SA-----GPE- 226 (811)
Q Consensus 180 ~~~~---------------------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-l~-----~~-----~~~- 226 (811)
.+-+ -..++.+++..|-..-|+.|+ ++.+.+|.+..... .. .+ ..+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123567777777533445554 56788998754332 11 11 111
Q ss_pred CCCeeEEEEecCCCEEEEEECCCEEEEEe
Q 003556 227 TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (811)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (811)
.-.+..++|. +.|+|..++..++|+.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 2224566666 55888888877777654
No 465
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.22 E-value=85 Score=37.79 Aligned_cols=237 Identities=13% Similarity=0.180 Sum_probs=122.9
Q ss_pred EEeeCCCcEEEEEECCCeEEEEEC-CCCceEEEecC-CCCCeEEEEEcCC---CCEEEEEECCCe-EEEEECCCC-----
Q 003556 23 KIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSG-HTSGIDSVSFDSS---EVLVAAGAASGT-IKLWDLEEA----- 91 (811)
Q Consensus 23 afsp~~~~lLatgs~Dg~I~VWdl-~t~~~~~~l~~-h~~~V~~l~fspd---g~~Lasgs~DG~-I~IWDl~t~----- 91 (811)
.++|+ ...+-.|=....|--|=+ .+++.+..+.- .+..|.|+..... ..+.++|-.++. -++-.+..+
T Consensus 34 ~~s~~-sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPD-SNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCC-CceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 45563 333444433334444443 45666666652 4456777776432 235555534433 343333222
Q ss_pred ------e--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEec-CCCCeEEEEEcC------C
Q 003556 92 ------K--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKG-HTRGVNAIRFTP------D 154 (811)
Q Consensus 92 ------~--~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~~~~-h~~~I~si~fsp------d 154 (811)
+ ....++ -.+.|..+.|..+++.+++...+|.|.+||...+. .+...+. +...+.--+|-+ .
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 112222 35678899999999999999999999999993222 1112211 111111112222 2
Q ss_pred CCEEEEEEC-CC---eEEEEEC-CCCeEEEEEe---cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003556 155 GRWVVSGGE-DN---TVKLWDL-TAGKLLHDFK---CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGP 225 (811)
Q Consensus 155 g~~L~sgs~-Dg---~I~IwDl-~t~~~i~~~~---~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~ 225 (811)
..++++.+. ++ ..+++.+ .....+.++. .+........|.- +|.+..- .+++|.+|++...+...++.-
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 334444443 22 4677777 1222233332 1222223333333 4544333 678999999999887766432
Q ss_pred C-----C-CCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeee
Q 003556 226 E-----T-SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (811)
Q Consensus 226 ~-----~-~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (811)
. . ..+.++. .|....+..+..+.|.+.|+.-...+..+
T Consensus 270 ~~ii~~~~~~~vSl~-~~s~nRvLLs~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 270 PSIIDKESDDLVSLK-PPSPNRVLLSVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred chhhccccccceEee-cCCCCeEEEEcCCEEEEEeehhhhhhhhh
Confidence 2 1 2233433 34445666677888888888654444333
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.07 E-value=17 Score=44.03 Aligned_cols=142 Identities=12% Similarity=0.161 Sum_probs=88.6
Q ss_pred CcEEEEEECCCeEEEEECCCCceE------EEec----------------CCCCCeEEEEEc--CCCCEEEEEECCCeEE
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAI------LSLS----------------GHTSGIDSVSFD--SSEVLVAAGAASGTIK 84 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~------~~l~----------------~h~~~V~~l~fs--pdg~~Lasgs~DG~I~ 84 (811)
..+++++. .+.|.||+....... ..+. .....|+.|... -+...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 45666665 578999998432221 1110 011235555443 3456888999999999
Q ss_pred EEECCC-------C----e---------EEEEEcCCCCCeEEEEEe--CCCCEEEEEECCCcEEEEECCCC--eE-EEEE
Q 003556 85 LWDLEE-------A----K---------IVRTLTGHRSNCISVDFH--PFGEFFASGSLDTNLKIWDIRKK--GC-IHTY 139 (811)
Q Consensus 85 IWDl~t-------~----~---------~v~~l~~h~~~I~sl~fs--pdg~~Lasgs~Dg~I~IwDl~~~--~~-i~~~ 139 (811)
+|.+++ . + +...+. ....+++++++ ...++||+++....|.||-.... +. ...-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997621 1 0 111222 34578999999 77788999988888888755431 11 1111
Q ss_pred ecCCCCeEEEEEcCCC---C---EEEEEECCCeEEEEEC
Q 003556 140 KGHTRGVNAIRFTPDG---R---WVVSGGEDNTVKLWDL 172 (811)
Q Consensus 140 ~~h~~~I~si~fspdg---~---~L~sgs~Dg~I~IwDl 172 (811)
..+...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1255678899998743 2 7888889999999887
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.94 E-value=28 Score=33.10 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=71.6
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCe--------EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECC
Q 003556 107 VDFHPFGEFFASGSLDTNLKIWDIRKKG--------CIHTYKGHTRGVNAIRFTP-----DGRWVVSGGEDNTVKLWDLT 173 (811)
Q Consensus 107 l~fspdg~~Lasgs~Dg~I~IwDl~~~~--------~i~~~~~h~~~I~si~fsp-----dg~~L~sgs~Dg~I~IwDl~ 173 (811)
-.|......|++++..|.|.|++..... .+..+. -...|++++-.+ +...|+.| ....|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 3455555678888899999999876332 334443 456688876544 23455555 56788999998
Q ss_pred CCeEEEEEecCCCCeEEEEEeC----CCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003556 174 AGKLLHDFKCHEGQIQCIDFHP----HEFLLATGSADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 174 t~~~i~~~~~h~~~V~sv~fsp----dg~~Lasgs~Dg~I~IwDl~~~~~l~~~ 223 (811)
...-+..-. -...|.++.+-. ...++++| .+..|.-||.+..+.....
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 876554333 345677776633 23344444 4778888887766655443
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.90 E-value=9.9 Score=48.22 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=35.2
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE
Q 003556 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (811)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 219 (811)
.+...+.+.+|+.........+.. ....+..++..++++..||.+.+||...++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 214 IGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 344455555555443333333322 2222277899999999999999999998766
No 469
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.67 E-value=2.8 Score=31.56 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCEEEEEEeeCCC--cEEEEEECCCeEEEEECCC
Q 003556 17 STVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGK 48 (811)
Q Consensus 17 ~~V~~lafsp~~~--~lLatgs~Dg~I~VWdl~t 48 (811)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998666 7899888889999999974
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.12 E-value=39 Score=36.91 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCcEEEEEECC-----CeEEEEECCCCce---EEEecCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECCCCe
Q 003556 28 SSRVLVTGGED-----HKVNLWAIGKPNA---ILSLSGHTSGI--DSVSFDSSEVLVAAGAA-----SGTIKLWDLEEAK 92 (811)
Q Consensus 28 ~~~lLatgs~D-----g~I~VWdl~t~~~---~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----DG~I~IWDl~t~~ 92 (811)
++.+++.|+.+ ..+..||+.+... ...+..-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45667777754 3566677765543 12222111111 12222 24566666664 2468888987665
Q ss_pred EEEE--EcCCCCCeEEEEEeCCCCEEEEEECCC----cEEEEECCCCeE
Q 003556 93 IVRT--LTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGC 135 (811)
Q Consensus 93 ~v~~--l~~h~~~I~sl~fspdg~~Lasgs~Dg----~I~IwDl~~~~~ 135 (811)
.... +... ......+...+++.++.|+.++ .+..||..+.+-
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3322 2211 1112222233567777777654 356888877653
No 471
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.07 E-value=0.11 Score=58.21 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=101.8
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEE-EE
Q 003556 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLH-DF 181 (811)
Q Consensus 104 I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~-~~ 181 (811)
.....|-+.+.-++.++.+..+..||- .++...... ..+....++|.-+|..++ .+-..+.+.+||+.+..... ++
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345678888877999989999999994 444444443 345566788888776554 45567899999997543211 12
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEecCCCEEEEEECC
Q 003556 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (811)
Q Consensus 182 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (811)
.+ ...-.-+.|++.+..++.|...|.+.||+..+...+.....|...+++++|.+.+..+..+++.
T Consensus 115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence 21 1222227889988899999999999999998877777777788889999999988777666543
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=12 Score=47.35 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=88.8
Q ss_pred ECCCeEEEEECCCCceEEEecCCCCCeEEEEE--------cCCCCEEEEEECCCeEEEEECCCCeE---------EEEEc
Q 003556 36 GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--------DSSEVLVAAGAASGTIKLWDLEEAKI---------VRTLT 98 (811)
Q Consensus 36 s~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~DG~I~IWDl~t~~~---------v~~l~ 98 (811)
+-|..+.+|+.+++.....+.+....|..+.. .|.=++++..+.--.|.++-+.-.+. ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999998888888887777877765 22233444444455566665432110 01222
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCcEEE--EECCCC---e-E----------------EEEEe-cCCCCeEEEEEcCCC
Q 003556 99 GHRSNCISVDFHPFGEFFASGSLDTNLKI--WDIRKK---G-C----------------IHTYK-GHTRGVNAIRFTPDG 155 (811)
Q Consensus 99 ~h~~~I~sl~fspdg~~Lasgs~Dg~I~I--wDl~~~---~-~----------------i~~~~-~h~~~I~si~fspdg 155 (811)
.....|.|+....+|+.|++| .||.|+- |....+ + | +..+. .+..+|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 335568888877777766665 5664442 222211 1 1 11122 456789999999888
Q ss_pred CEEEEEECCCeEEEEECCC
Q 003556 156 RWVVSGGEDNTVKLWDLTA 174 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t 174 (811)
..+++-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999976
No 473
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.69 E-value=7.1 Score=40.52 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=48.2
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeEEEEe-------C-------CCCCCeeEEEEecCCCEEEEEECCCEEEEEec
Q 003556 193 FHPHEFLLATGSADRTVKFWDLETFELIGSA-------G-------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (811)
Q Consensus 193 fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~-------~-------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (811)
+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+++....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4457889999999999999999998765432 1 24566888888888988887777666565543
No 474
>PLN02153 epithiospecifier protein
Probab=84.53 E-value=69 Score=35.28 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=63.4
Q ss_pred eEEEEECCCCeEEEEEc-C--CCC---CeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeEEE--EEe----cCCC
Q 003556 82 TIKLWDLEEAKIVRTLT-G--HRS---NCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIH--TYK----GHTR 144 (811)
Q Consensus 82 ~I~IWDl~t~~~v~~l~-~--h~~---~I~sl~fspdg~~Lasgs~D-----g~I~IwDl~~~~~i~--~~~----~h~~ 144 (811)
.+.+||+.+.+-...-. + ... ....+.+ ++..++.|+.+ ..+.+||+.+.+-.. .+. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 57788887765332111 0 010 1122222 35667777653 357889987654322 111 0011
Q ss_pred CeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEecCC----CC-eEEEEEeCCCCEEEEEECC--
Q 003556 145 GVNAIRFTPDGRWVVSGGED-----------NTVKLWDLTAGKLLHDFKCHE----GQ-IQCIDFHPHEFLLATGSAD-- 206 (811)
Q Consensus 145 ~I~si~fspdg~~L~sgs~D-----------g~I~IwDl~t~~~i~~~~~h~----~~-V~sv~fspdg~~Lasgs~D-- 206 (811)
.-.+++. -+++.++.|+.+ ..+.+||..+.+-.. +.... .. -.+++. -++++++.|+.+
T Consensus 129 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred eeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 1122222 245666777653 246778887654321 11110 11 112222 355666655432
Q ss_pred -----------CeEEEEECCCCeEE
Q 003556 207 -----------RTVKFWDLETFELI 220 (811)
Q Consensus 207 -----------g~I~IwDl~~~~~l 220 (811)
..|.+||..+.+-.
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEE
Confidence 46888998875533
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=65 Score=34.75 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=96.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC---e
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK---G 134 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~---~ 134 (811)
+-+..+.++ ++++..+..+.-++|.|+.+...-..+.. ..+...++.. .|++..++..|.-+.++|+.+. .
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 445566665 44666677777899999987543322221 1133344444 5899888886666888888654 3
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003556 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (811)
Q Consensus 135 ~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 211 (811)
....+.........++.+ |++-+.+..|+-+.+.|+.+.. .+.... ....+.++..+++..+++... .-+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceEE
Confidence 344454444445677776 7788888899999999997643 333333 233678888887766666553 34777
Q ss_pred EECCCCeE
Q 003556 212 WDLETFEL 219 (811)
Q Consensus 212 wDl~~~~~ 219 (811)
-|..+.+.
T Consensus 238 vd~s~~ss 245 (370)
T COG5276 238 VDVSGPSS 245 (370)
T ss_pred EecCCCCC
Confidence 77776553
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.09 E-value=21 Score=36.73 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=67.8
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------eEEEE---ECC--CCeEEE-
Q 003556 156 RWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR------TVKFW---DLE--TFELIG- 221 (811)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg------~I~Iw---Dl~--~~~~l~- 221 (811)
..|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|++|++--.+. .+++| +.. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555677889999988 3455666664 48899999999999999864332 55665 221 111111
Q ss_pred EeC---------------------CCCCCeeEEEEecCCCEEEEEECCCEEEEEecC
Q 003556 222 SAG---------------------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (811)
Q Consensus 222 ~~~---------------------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (811)
.+. +...++.+++..|-.--|++|+++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 111 124467888888876677888899999998764
No 477
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.06 E-value=7.2 Score=46.98 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=76.1
Q ss_pred EEEEEEee-CCCcEEEEEECCCeEEEEECCC-------C-------------ceEEEecCCCCCeEEEEEc--CCCCEEE
Q 003556 19 VNCLKIGR-KSSRVLVTGGEDHKVNLWAIGK-------P-------------NAILSLSGHTSGIDSVSFD--SSEVLVA 75 (811)
Q Consensus 19 V~~lafsp-~~~~lLatgs~Dg~I~VWdl~t-------~-------------~~~~~l~~h~~~V~~l~fs--pdg~~La 75 (811)
|+-+.... .+..+|+.|.+||.|.+|..++ . ++...+. ....++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554433 2456899999999999996511 1 0122222 34578999998 8888999
Q ss_pred EEECCCeEEEEECCCC--eE-EEEEcCCCCCeEEEEEeCCC---C---EEEEEECCCcEEEEECC
Q 003556 76 AGAASGTIKLWDLEEA--KI-VRTLTGHRSNCISVDFHPFG---E---FFASGSLDTNLKIWDIR 131 (811)
Q Consensus 76 sgs~DG~I~IWDl~t~--~~-v~~l~~h~~~I~sl~fspdg---~---~Lasgs~Dg~I~IwDl~ 131 (811)
+++....|.||-.... +. ...-..|...|-+|+|-++. . .+++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9998888888865432 11 11111366788999998743 2 78889999999999873
No 478
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.97 E-value=94 Score=36.37 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=119.9
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCC-CCCeEEEEEeCCC-CEEEEEECC--CcEEEEECCCCeEEEEEec
Q 003556 68 DSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGH-RSNCISVDFHPFG-EFFASGSLD--TNLKIWDIRKKGCIHTYKG 141 (811)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~t~~--~v~~l~~h-~~~I~sl~fspdg-~~Lasgs~D--g~I~IwDl~~~~~i~~~~~ 141 (811)
..++..++.+..+|.+....+.... .....-+. .....++++..+| .+|+.|+.- +.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4467788889999999988876543 11222222 4556677777655 477777764 456666655555666665
Q ss_pred CCCCeEEEEEcCC----CC------EEEEEE---CCCeEEEEECCCCeEEE----EEecCCC--CeEEEEEeC-CCCEEE
Q 003556 142 HTRGVNAIRFTPD----GR------WVVSGG---EDNTVKLWDLTAGKLLH----DFKCHEG--QIQCIDFHP-HEFLLA 201 (811)
Q Consensus 142 h~~~I~si~fspd----g~------~L~sgs---~Dg~I~IwDl~t~~~i~----~~~~h~~--~V~sv~fsp-dg~~La 201 (811)
.-++|..+++.+. .. .|++++ .+|.++++. .|-... ......+ .++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3568988888631 11 555554 467888874 332222 1121222 334443322 245777
Q ss_pred EEECCCeEEEEECC---CCeEEEEeC--CC---CCCeeEEEEecCCCEEEEEECCCEEEEEecCCceeeeeeccccceeE
Q 003556 202 TGSADRTVKFWDLE---TFELIGSAG--PE---TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSD 273 (811)
Q Consensus 202 sgs~Dg~I~IwDl~---~~~~l~~~~--~~---~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~i~~ 273 (811)
.+..+.+ +++.+. ..+.+.... +. ...+.+-.+. +..++=-+..++++.+....+....+.......-.
T Consensus 376 ~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 376 LSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 7776554 455553 333332221 11 1222222222 45555555677888877666655544333222222
Q ss_pred eeecCCCEEEEEECCCeEEEEEecCCCcee
Q 003556 274 LNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (811)
Q Consensus 274 l~~~dg~lLasg~~Dg~V~IWdvd~~~~~p 303 (811)
....++..++.+..++.+..+.++...+..
T Consensus 453 ~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 482 (504)
T PF10433_consen 453 AASINDPQVLVALSGGELVYFELDDNKISV 482 (504)
T ss_dssp EEEESSSEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEECCCEEEEEEeCCcEEEEEEECCceee
Confidence 333455667777778889999998877753
No 479
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.65 E-value=1.1e+02 Score=36.94 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=138.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEECCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC------CCe
Q 003556 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA------SGT 82 (811)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg--~I~VWdl~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~------DG~ 82 (811)
.+..+...+..+.|+|++ .+++..+.++ ...+|-+.... .+..+...+....|++++..++.... ++.
T Consensus 54 ~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 54 RLLTFGGGVSELRWSPDG-SVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred cccccCCcccccccCCCC-CEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 456677889999999955 4455444222 23333332221 34445667888899999887776211 232
Q ss_pred -------EEEEECCCC-eE-----------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCc-------EEEEECCCCeEE
Q 003556 83 -------IKLWDLEEA-KI-----------VRTLTGHRSNCISVDFHPFGEFFASGSLDTN-------LKIWDIRKKGCI 136 (811)
Q Consensus 83 -------I~IWDl~t~-~~-----------v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~-------I~IwDl~~~~~i 136 (811)
+.+|....+ .. ..........+....+++++..++....+.. ..++...++ .+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-EL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ce
Confidence 334443333 11 1112223445666666766666665554432 233333233 34
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeEEEEEecCC--CCeEEEEE-eCCCCEEEEEEC
Q 003556 137 HTYKGHTRGVNAIRFTPDGRWVVSGGED-N-------TVKLWDLTAGKLLHDFKCHE--GQIQCIDF-HPHEFLLATGSA 205 (811)
Q Consensus 137 ~~~~~h~~~I~si~fspdg~~L~sgs~D-g-------~I~IwDl~t~~~i~~~~~h~--~~V~sv~f-spdg~~Lasgs~ 205 (811)
.........+..+.|.++|+.++..+.. . .+.+++...++......... .....+.+ -+++..++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD 288 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEec
Confidence 4444455668889999999855544332 2 23344422222222111100 00001111 123334444443
Q ss_pred -CCeEEEEECCCCe-EEEEeCCCCCCeeEEEEecCCCEEEEEECC---CEEEEEecCCceeeeeeccccceeEeeecCCC
Q 003556 206 -DRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK 280 (811)
Q Consensus 206 -Dg~I~IwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~~~i~~l~~~dg~ 280 (811)
.|...++...... ...........+..+.+ ++..++..... --.+|-+...............+.......-+
T Consensus 289 ~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 366 (620)
T COG1506 289 GGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDRGEEAKLTSSNNSGLKKVKLAEPE 366 (620)
T ss_pred CCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcCCCceEEeecccccccccccCCce
Confidence 5667766665322 12223333355666555 77776654332 24444444222222222222222233444556
Q ss_pred EEEEEECCC-eEEEEEecCCCce
Q 003556 281 LLGCSYNQS-CVGVWVVDISRIE 302 (811)
Q Consensus 281 lLasg~~Dg-~V~IWdvd~~~~~ 302 (811)
.+..-+.|| .|.-|-+......
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~ 389 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFD 389 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC
Confidence 666667676 8888877665544
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.06 E-value=1.4e+02 Score=37.59 Aligned_cols=74 Identities=26% Similarity=0.434 Sum_probs=47.9
Q ss_pred ecCCCCEEEEEEeeCC-----CcEEEEEECCCeEEEEECCCCceEEEec--CCCCCeEEEEEc---CCC------CEEEE
Q 003556 13 VAHSSTVNCLKIGRKS-----SRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFD---SSE------VLVAA 76 (811)
Q Consensus 13 ~~H~~~V~~lafsp~~-----~~lLatgs~Dg~I~VWdl~t~~~~~~l~--~h~~~V~~l~fs---pdg------~~Las 76 (811)
+.-+..|.|+++.++. .++++.|+.|++++++.+....++..+. +-..++.++.+- .++ -+|.+
T Consensus 579 ~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~ 658 (1205)
T KOG1898|consen 579 VTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLI 658 (1205)
T ss_pred eeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEe
Confidence 4445689999998743 4689999999999999987666665543 334444444442 222 25556
Q ss_pred EECCCeEEEE
Q 003556 77 GAASGTIKLW 86 (811)
Q Consensus 77 gs~DG~I~IW 86 (811)
|-.+|.+.-+
T Consensus 659 GL~NGvllR~ 668 (1205)
T KOG1898|consen 659 GLRNGVLLRF 668 (1205)
T ss_pred cccccEEEEE
Confidence 6666654433
No 481
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.94 E-value=1e+02 Score=36.05 Aligned_cols=226 Identities=14% Similarity=0.176 Sum_probs=114.6
Q ss_pred CCCcEEEEEECCCeEEEEECCCCce--EEEecCC-CCCeEEEEEcCCC-CEEEEEEC--CCeEEEEECCCCeEEEEEcCC
Q 003556 27 KSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGH-TSGIDSVSFDSSE-VLVAAGAA--SGTIKLWDLEEAKIVRTLTGH 100 (811)
Q Consensus 27 ~~~~lLatgs~Dg~I~VWdl~t~~~--~~~l~~h-~~~V~~l~fspdg-~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h 100 (811)
.+...++.+.++|.++...+..... ....-+. .....++.+..++ .+|+.|+. |+.+..|....-+.+..+. .
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 4567788899999999988754331 2222222 5566777776655 46677766 4556666655556677776 5
Q ss_pred CCCeEEEEEeCC----CC------EEEEEE---CCCcEEEEECCCCeEEE----EEecCC--CCeEEEEEcC-CCCEEEE
Q 003556 101 RSNCISVDFHPF----GE------FFASGS---LDTNLKIWDIRKKGCIH----TYKGHT--RGVNAIRFTP-DGRWVVS 160 (811)
Q Consensus 101 ~~~I~sl~fspd----g~------~Lasgs---~Dg~I~IwDl~~~~~i~----~~~~h~--~~I~si~fsp-dg~~L~s 160 (811)
-++|.++++... .. .|++++ .+|.++++. .|-... ...... ..++.+.... ++.+|+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 578988888632 11 555554 467888774 222222 111112 2233343322 2567777
Q ss_pred EECCCeEEEEECC---CCeEEEEEe--c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCee
Q 003556 161 GGEDNTVKLWDLT---AGKLLHDFK--C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVR 231 (811)
Q Consensus 161 gs~Dg~I~IwDl~---t~~~i~~~~--~---h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~-~~~I~ 231 (811)
+..+.+ +++.+. ....+.+.. + ....+.+-.+. +..++=.+.. .|++.+...++....+... ...|.
T Consensus 377 S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 377 SFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---S
T ss_pred EcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEE
Confidence 765544 455443 233332221 1 11123222222 3344444443 4888988888877765443 34455
Q ss_pred EEEEecCCCEEEEEECCCEEEEEecCCce
Q 003556 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRC 260 (811)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (811)
+.+.. ++..+++...+.+..+.++....
T Consensus 453 ~a~~~-~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 453 AASIN-DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEEES-SSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEEEC-CCEEEEEEeCCcEEEEEEECCce
Confidence 55544 34444445566788888776554
No 482
>PRK05560 DNA gyrase subunit A; Validated
Probab=82.17 E-value=1.4e+02 Score=37.20 Aligned_cols=207 Identities=13% Similarity=0.066 Sum_probs=106.8
Q ss_pred CCcEEEEEECCCeEEEEEC---C------CCceE---EEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC---
Q 003556 28 SSRVLVTGGEDHKVNLWAI---G------KPNAI---LSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEE--- 90 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl---~------t~~~~---~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t--- 90 (811)
....|+..+..|.++...+ . .|..+ ..+.....-|.++.+.. ++.+++..+.+|.++--.+..
T Consensus 547 t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 547 THDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 3344556666787766644 2 12222 12232233455555552 667888899999999877643
Q ss_pred ----CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEE-EEcCCCC
Q 003556 91 ----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAI-RFTPDGR 156 (811)
Q Consensus 91 ----~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~~~~h~~~I~si-~fspdg~ 156 (811)
|.....+.. .+.+..+........++..+..|.+..+.+.. |.....+.. ...|.++ .+.+++.
T Consensus 627 ~~r~G~~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ 704 (805)
T PRK05560 627 IRSNGIIAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQ 704 (805)
T ss_pred cccCCceeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCc
Confidence 222333332 34444444444556777777888777776532 112222321 2234433 3444444
Q ss_pred EEEEEECCCeEEEEECCC-------Ce--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003556 157 WVVSGGEDNTVKLWDLTA-------GK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (811)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t-------~~--~i~~~~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~ 227 (811)
+++..+..|.++...+.. ++ ....+....+.+..+........++..+.+|.+..++...-. ......
T Consensus 705 ~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~gR~a 781 (805)
T PRK05560 705 EILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---ITGRNT 781 (805)
T ss_pred EEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---ccccCC
Confidence 788888889888776432 11 222222222344333333333445666667777777654321 122223
Q ss_pred CCeeEEEEecCC
Q 003556 228 SGVRCLTFNPDG 239 (811)
Q Consensus 228 ~~I~sl~fspdg 239 (811)
.++..+.+..++
T Consensus 782 ~GVk~I~L~~~D 793 (805)
T PRK05560 782 QGVRLIRLDEGD 793 (805)
T ss_pred CCeeeEecCCCC
Confidence 446666665443
No 483
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.73 E-value=5.4 Score=30.07 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCC---CEEEEEECCCeEEEEECCC
Q 003556 186 GQIQCIDFHPHE---FLLATGSADRTVKFWDLET 216 (811)
Q Consensus 186 ~~V~sv~fspdg---~~Lasgs~Dg~I~IwDl~~ 216 (811)
+.+.++.|+|.. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5888888889999999994
No 484
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.36 E-value=8.5 Score=39.91 Aligned_cols=65 Identities=11% Similarity=0.220 Sum_probs=43.7
Q ss_pred EeCCCCEEEEEECCCcEEEEECCCCeEEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003556 109 FHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-------K-------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (811)
Q Consensus 109 fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~-------~-------~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t 174 (811)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999998765432 1 1334566666666666555443 45666666543
No 485
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.28 E-value=92 Score=34.36 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEc----CCCCCeEEEEEeCC---CCEEE-EEECC--------
Q 003556 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI---VRTLT----GHRSNCISVDFHPF---GEFFA-SGSLD-------- 122 (811)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~---v~~l~----~h~~~I~sl~fspd---g~~La-sgs~D-------- 122 (811)
-+.|+|.|+++++++ ...|.|++++ ..+.. +..+. ........++++|+ ..+|. +.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999987765 6699999999 44443 33331 23456899999994 23333 33311
Q ss_pred CcEEEEECCCC-------eEE-EEEec---CCCCeEEEEEcCCCCEEEEEECC
Q 003556 123 TNLKIWDIRKK-------GCI-HTYKG---HTRGVNAIRFTPDGRWVVSGGED 164 (811)
Q Consensus 123 g~I~IwDl~~~-------~~i-~~~~~---h~~~I~si~fspdg~~L~sgs~D 164 (811)
..|.-|..... +.+ ..+.. .......|.|.|||.++++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444444333 111 12222 22345679999999766666553
No 486
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.02 E-value=1e+02 Score=34.72 Aligned_cols=189 Identities=12% Similarity=0.219 Sum_probs=109.5
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEecCCCCCeEEEEEc----CCCCE--EEEE-ECC---CeEEEEECC--CCeEEEE
Q 003556 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD----SSEVL--VAAG-AAS---GTIKLWDLE--EAKIVRT 96 (811)
Q Consensus 29 ~~lLatgs~Dg~I~VWdl~t~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasg-s~D---G~I~IWDl~--t~~~v~~ 96 (811)
..+++....++-+.+||+. |+.+..+.. +.++.+..- -.++. |+++ ..+ .+|++|.+. ++. +..
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 4467777888899999986 777777652 344444331 12332 3333 332 469999775 343 333
Q ss_pred EcC-------CCCCeEEEEEe--C-CCC-EEEEEECCCcEEEEECC---CC----eEEEEEecCCCCeEEEEEcCCCCEE
Q 003556 97 LTG-------HRSNCISVDFH--P-FGE-FFASGSLDTNLKIWDIR---KK----GCIHTYKGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 97 l~~-------h~~~I~sl~fs--p-dg~-~Lasgs~Dg~I~IwDl~---~~----~~i~~~~~h~~~I~si~fspdg~~L 158 (811)
+.. ....++.+|+- + +|. +++....+|.+..|-+. .+ +.++.|.. ...+..+.......+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 321 12346777764 3 354 67778889988888764 33 35777764 4578899999888899
Q ss_pred EEEECCCeEEEEECCC-----CeEEEEEec--CCCCeEEEEEeC--CC--CEEEEEECCCeEEEEECCC-CeEEEE
Q 003556 159 VSGGEDNTVKLWDLTA-----GKLLHDFKC--HEGQIQCIDFHP--HE--FLLATGSADRTVKFWDLET-FELIGS 222 (811)
Q Consensus 159 ~sgs~Dg~I~IwDl~t-----~~~i~~~~~--h~~~V~sv~fsp--dg--~~Lasgs~Dg~I~IwDl~~-~~~l~~ 222 (811)
+.+-++.-|.-|+... +..+....+ ....|-.+++-. ++ .+|++.-.+++..+||.+. ...+..
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 9999998888888762 223333222 234567776643 33 3444444577899999875 333433
No 487
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.76 E-value=57 Score=40.04 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 186 GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 186 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
-.|..+.++|+|.+||..+..|. .|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence 45889999999999999988764 44444
No 488
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.26 E-value=28 Score=39.43 Aligned_cols=136 Identities=14% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCeEEEEECCCC--ceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEcCCCCCeEEEEEe
Q 003556 38 DHKVNLWAIGKP--NAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR----TLTGHRSNCISVDFH 110 (811)
Q Consensus 38 Dg~I~VWdl~t~--~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~----~l~~h~~~I~sl~fs 110 (811)
.|.+.=|-+... ...-.+. ...++|.++.|++|.+.+|+--.+.+|.+++....+... +.+.....|...+|.
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT 121 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence 344666655322 2222222 345799999999999999999999999999984433221 222334568899998
Q ss_pred CCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCC
Q 003556 111 PFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG--EDNTVKLWDLTAG 175 (811)
Q Consensus 111 pdg~~Lasgs~Dg~I~IwDl~~-~~~i~~~~~h~~~I~si~fspdg~~L~sgs--~Dg~I~IwDl~t~ 175 (811)
.. .-+|.-+..| +-+|.+.. ...++..+.|...|.-..|.++.+.++.++ ..+.+.=+-++++
T Consensus 122 ~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 122 SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 65 5566665555 66665432 334556677888899999999877654443 3334433444443
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.17 E-value=29 Score=37.41 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=69.5
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEec-----CCCCeEE
Q 003556 122 DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG------EDNTVKLWDLTAGKLLHDFKC-----HEGQIQC 190 (811)
Q Consensus 122 Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs------~Dg~I~IwDl~t~~~i~~~~~-----h~~~V~s 190 (811)
-..|++||..+.+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||+.+..- ..+.. -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 34699999887765554455667899999986666666553 345688899887643 23332 2367888
Q ss_pred EEEeC-CC-CEEEEEE-C--CCeEEEEECCCCeEEEE-eCCCCCCeeEEEEe
Q 003556 191 IDFHP-HE-FLLATGS-A--DRTVKFWDLETFELIGS-AGPETSGVRCLTFN 236 (811)
Q Consensus 191 v~fsp-dg-~~Lasgs-~--Dg~I~IwDl~~~~~l~~-~~~~~~~I~sl~fs 236 (811)
+.+.. ++ .+.+.|. . +..|..||-.++..+.. .......|..+.+-
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 87743 23 3444443 2 33577787766666554 22234455555443
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.67 E-value=24 Score=44.79 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=93.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe--------CCCCEEEEEECCCcEEEEECCC--
Q 003556 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH--------PFGEFFASGSLDTNLKIWDIRK-- 132 (811)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fs--------pdg~~Lasgs~Dg~I~IwDl~~-- 132 (811)
..+-+-|.=..... +.|..+.+|+.+++.....+.+....|..+..- |.=+++++.+.--.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 33444444333322 458999999999988777777777777666542 2234555544556677664431
Q ss_pred --CeE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE--EECCCC---e-E----------------EEEEe-
Q 003556 133 --KGC-----IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL--WDLTAG---K-L----------------LHDFK- 182 (811)
Q Consensus 133 --~~~-----i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~I--wDl~t~---~-~----------------i~~~~- 182 (811)
+.. ..++....-.|.|+....+|+.|++| .||.|+- |....+ + + +..+.
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 110 12222335568899988888877665 5564332 222111 0 0 11222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003556 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (811)
Q Consensus 183 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 216 (811)
.+..+|..+........+.+-+..|+|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 3566899999988888999999999999999976
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=77.29 E-value=79 Score=38.34 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=45.3
Q ss_pred EEEEEeCCCCEEEEEECCC-----eEEEEECCC---CeEEEEeCCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCc
Q 003556 189 QCIDFHPHEFLLATGSADR-----TVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR 259 (811)
Q Consensus 189 ~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~---~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~ 259 (811)
..+.|-|+|..+++-..|| .|.++.-+. |+.-.. .+....+..++|+-....++++..+.+++|-.....
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 4588999999999987665 366665332 222111 122344567788877777888877888888765543
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.14 E-value=41 Score=38.77 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003556 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (811)
Q Consensus 103 ~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (811)
.|..+..++.|..++-.+.+|.+.++=.+....-..++..+..|+|-.|.-+. .|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC--------------------
Confidence 35667778888888888888855444333333333343333334443333221 122111
Q ss_pred cCCCCeEEEEEeCCC---CEEEEEECCCeEEEEECCCCeEEEEe
Q 003556 183 CHEGQIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSA 223 (811)
Q Consensus 183 ~h~~~V~sv~fspdg---~~Lasgs~Dg~I~IwDl~~~~~l~~~ 223 (811)
..-.+..++|||+. ..|..-+.|++|++||+.....+...
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235567888874 56777778999999999876665443
No 493
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=76.21 E-value=2.1e+02 Score=35.70 Aligned_cols=206 Identities=16% Similarity=0.088 Sum_probs=106.8
Q ss_pred CCcEEEEEECCCeEEEEECC---C------CceE---EEecCCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCeE
Q 003556 28 SSRVLVTGGEDHKVNLWAIG---K------PNAI---LSLSGHTSGIDSVSFD--SSEVLVAAGAASGTIKLWDLEEAKI 93 (811)
Q Consensus 28 ~~~lLatgs~Dg~I~VWdl~---t------~~~~---~~l~~h~~~V~~l~fs--pdg~~Lasgs~DG~I~IWDl~t~~~ 93 (811)
....|+..+..|.++..... . |..+ ..+.....-|.++... .++.+++..+.+|.++-.++.....
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 34446666667877666541 1 2222 2222223334455542 3556788889999999988754221
Q ss_pred -------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCCCE
Q 003556 94 -------VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDGRW 157 (811)
Q Consensus 94 -------v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~~~~h~~~I~si~fspdg~~ 157 (811)
...+.. .+.+..+........++..+..|.+..+.+.. |.....+. ....|.++....++.+
T Consensus 625 ~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ 702 (800)
T TIGR01063 625 IRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESY 702 (800)
T ss_pred hccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccE
Confidence 122222 34454444444556677777788777665431 11112222 2234555554445567
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003556 158 VVSGGEDNTVKLWDLTA-------GKLLHDF--KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (811)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~--~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~~~~~~~ 228 (811)
++..+..|.++...+.. ++-+..+ ....+.+..+....+...++..+.+|.+..++...-. .......
T Consensus 703 ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~---~~gR~a~ 779 (800)
T TIGR01063 703 LLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVS---EQGRNTQ 779 (800)
T ss_pred EEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCC---ccccCCC
Confidence 88888999888876532 2222222 2222344444444444456666677777766654322 1222234
Q ss_pred CeeEEEEecC
Q 003556 229 GVRCLTFNPD 238 (811)
Q Consensus 229 ~I~sl~fspd 238 (811)
++..+.+..+
T Consensus 780 GVk~i~L~~~ 789 (800)
T TIGR01063 780 GVRLIRLDED 789 (800)
T ss_pred CeeeeeeCCC
Confidence 4566665433
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.99 E-value=25 Score=37.08 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=81.3
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-C--CcEEEEECCC--CeEEE-----EEecCCCCeEEEEEc
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRK--KGCIH-----TYKGHTRGVNAIRFT 152 (811)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~-D--g~I~IwDl~~--~~~i~-----~~~~h~~~I~si~fs 152 (811)
-.+||+.+++....-.....-+.+-.+.++|+.|.+|+. + ..+++++... ..+-. .+. ....--.....
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 458999887654333333444555678899999998875 2 3577777543 11111 111 12222344456
Q ss_pred CCCCEEEEEECCCe-EEEEECCC-CeEEEE--Eec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003556 153 PDGRWVVSGGEDNT-VKLWDLTA-GKLLHD--FKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (811)
Q Consensus 153 pdg~~L~sgs~Dg~-I~IwDl~t-~~~i~~--~~~------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~l~~ 222 (811)
|||+.|+.|+.... .-+|.-.. ...... +-. ...--.-+...|+|++++.+..+ -.|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 79999999988753 44555421 111111 110 11122356678999999998765 45679888877666
Q ss_pred eCCC
Q 003556 223 AGPE 226 (811)
Q Consensus 223 ~~~~ 226 (811)
+..-
T Consensus 205 lP~l 208 (243)
T PF07250_consen 205 LPDL 208 (243)
T ss_pred CCCC
Confidence 5443
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.48 E-value=1.5e+02 Score=33.50 Aligned_cols=184 Identities=22% Similarity=0.320 Sum_probs=109.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe----CCCCE--EEEEE-CC---CcEEEEECC--CCeEE
Q 003556 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH----PFGEF--FASGS-LD---TNLKIWDIR--KKGCI 136 (811)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fs----pdg~~--Lasgs-~D---g~I~IwDl~--~~~~i 136 (811)
|...+|+.....+-+.+||+. |+.+..+. .+....+..- -.|+. |+.++ .+ ..|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 456688888889999999986 55666664 2334444332 13442 44444 32 468999765 333 3
Q ss_pred EEEec-------CCCCeEEEEEc--C-CCC-EEEEEECCCeEEEEECC---CC----eEEEEEecCCCCeEEEEEeCCCC
Q 003556 137 HTYKG-------HTRGVNAIRFT--P-DGR-WVVSGGEDNTVKLWDLT---AG----KLLHDFKCHEGQIQCIDFHPHEF 198 (811)
Q Consensus 137 ~~~~~-------h~~~I~si~fs--p-dg~-~L~sgs~Dg~I~IwDl~---t~----~~i~~~~~h~~~V~sv~fspdg~ 198 (811)
..+.. ....+..+|+. + +|. +++....+|.+..|-+. .+ +.+++|.. .+.+-.|.......
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 33321 11346677763 3 454 55667788987777664 33 46777774 45788888888888
Q ss_pred EEEEEECCCeEEEEECCC-----CeEEEEeCC--CCCCeeEEEEec--CC-CEEEEEECC--CEEEEEecC
Q 003556 199 LLATGSADRTVKFWDLET-----FELIGSAGP--ETSGVRCLTFNP--DG-RTLLCGLHE--SLKVFSWEP 257 (811)
Q Consensus 199 ~Lasgs~Dg~I~IwDl~~-----~~~l~~~~~--~~~~I~sl~fsp--dg-~~Lasgs~d--~I~Vwd~~~ 257 (811)
+|+.+-++--|+-|+.+. ++.+....+ ....|-.|++-. +| .||++++.+ ...||+-+.
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999998898898862 334433322 345677777643 44 377777654 588998764
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.32 E-value=2.2e+02 Score=35.41 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=91.5
Q ss_pred CCCCeEEEEEe---C----CCCEEEEEECCCcEEEEECCCC---------------eEEEEEec---CCCCeEEEEEcC-
Q 003556 100 HRSNCISVDFH---P----FGEFFASGSLDTNLKIWDIRKK---------------GCIHTYKG---HTRGVNAIRFTP- 153 (811)
Q Consensus 100 h~~~I~sl~fs---p----dg~~Lasgs~Dg~I~IwDl~~~---------------~~i~~~~~---h~~~I~si~fsp- 153 (811)
...+|..|+|. . ...+|++- ....+.|+...-. .++..+.. -..+...++|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 55678888887 2 12345544 4455777762111 22333331 234677899999
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEEecCC----------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003556 154 DGRWVVSGGEDNTVKLWDLTAGK-----LLHDFKCHE----------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (811)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~-----~i~~~~~h~----------~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 218 (811)
+...||+....|...|||+..+. .+....... .....+.|.++...|++++. ..+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 55689999999999999992111 111111111 22347888888777777764 568999998876
Q ss_pred EEE--EeCCCCCCeeEEEEecCC-CEEEEEECCCEEEEEecC
Q 003556 219 LIG--SAGPETSGVRCLTFNPDG-RTLLCGLHESLKVFSWEP 257 (811)
Q Consensus 219 ~l~--~~~~~~~~I~sl~fspdg-~~Lasgs~d~I~Vwd~~~ 257 (811)
... ........|..+.-+++. .+++.-+...|-.++...
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 533 123345678888888762 233333445555555544
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.00 E-value=2.1e+02 Score=36.14 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=91.7
Q ss_pred EEEEECCCCceEEEecCCC----CCeEEEEEcCCCC--EEEEEEC-----------CCeEEEEECC-CCeEEEEEcCCCC
Q 003556 41 VNLWAIGKPNAILSLSGHT----SGIDSVSFDSSEV--LVAAGAA-----------SGTIKLWDLE-EAKIVRTLTGHRS 102 (811)
Q Consensus 41 I~VWdl~t~~~~~~l~~h~----~~V~~l~fspdg~--~Lasgs~-----------DG~I~IWDl~-t~~~v~~l~~h~~ 102 (811)
|++.|..+++.+..+.-.. -.+..+.|+..+. ++++|.. +|.++.|++- .++.+.-+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 5666665555554443111 2345555644322 3444332 3446666653 3443333322222
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEE--EEECCCCeEE
Q 003556 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGEDNTVK--LWDLTAGKLL 178 (811)
Q Consensus 103 ~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~--h~~~I~si~fspdg~~L~sgs~Dg~I~--IwDl~t~~~i 178 (811)
+..-.+.+|...++++| ....+++||+-+++.+++.+. ....|+.+++. +..+++|...-.+. .|+-..+ .+
T Consensus 935 ~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n-~l 1010 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDN-QL 1010 (1205)
T ss_pred CccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCC-eE
Confidence 22335667777776666 457899999988776655432 34567777775 56777776554444 4554433 44
Q ss_pred EEEecC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003556 179 HDFKCH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (811)
Q Consensus 179 ~~~~~h--~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (811)
..|-+. ...|+++.+- |...+|.+..=|.+++..+.
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 444432 2346665554 44467777666666665543
No 498
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=43 Score=38.04 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=79.5
Q ss_pred EECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEecCCCCeEEE
Q 003556 119 GSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH----DFKCHEGQIQCI 191 (811)
Q Consensus 119 gs~Dg~I~IwDl~~~---~~i~~~~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~----~~~~h~~~V~sv 191 (811)
+...|.+.-|-+... .++..-....++|.++.|++|.+.|++--.+..|.+++....+... +.+.....|...
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF 118 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGF 118 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEE
Confidence 334455555654322 1222222345689999999999999999999999999874332221 222234458888
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEecCCCEEEEE
Q 003556 192 DFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (811)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasg 245 (811)
+|..+ .-+|..+..| +-+|-... ...+...+.+...|.-..|+++-+.+..+
T Consensus 119 ~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 119 CWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 99876 4566665555 66665433 23344456677788888999988766544
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.17 E-value=1.6e+02 Score=33.53 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCeeEEEEecCCCEEEEEECCC-EEEEEecC
Q 003556 228 SGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (811)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (811)
..|.++...+..+.|++...++ |.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4489999998889999887775 99999976
No 500
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.12 E-value=1.3e+02 Score=32.26 Aligned_cols=244 Identities=13% Similarity=0.109 Sum_probs=139.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003556 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (811)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~I~sl~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~ 139 (811)
..-..++-.+||..-+++...|.|--.|..+|+....--+....-..|...|+|..-++-+.. .|.-.|-++.+. .+|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEe
Confidence 344667888999888888888888888999998877666666666678888888766654433 455556554432 222
Q ss_pred ----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003556 140 ----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (811)
Q Consensus 140 ----~~h~~~I~si~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (811)
+.-........|.+.|+.-+++.. |.---.|... ..+..|.. ....-+.|+..|+|..-++.-.++.|-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 222345778889999987777642 2211222221 23333432 2344678889999998888878888888887
Q ss_pred CCCeEEEEe--CCCCCCeeEEEEecCCCEEEEEECCCEEEEEecCCce-eeeeeccc--cceeEeeecC-CCEEEEEECC
Q 003556 215 ETFELIGSA--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC-HDAVDVGW--SRLSDLNVHE-GKLLGCSYNQ 288 (811)
Q Consensus 215 ~~~~~l~~~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~-~~~~~~~~--~~i~~l~~~d-g~lLasg~~D 288 (811)
..+...... .......+.+.-+|.|+.-++.. ++-.++-+++... ...+.... ..-.++.+.+ +....+-..-
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc
Confidence 766322211 12123445565667777666532 3224444443221 12221111 1122333322 3333333444
Q ss_pred CeEEEEEecCCCceeeeecc
Q 003556 289 SCVGVWVVDISRIEPYTIGS 308 (811)
Q Consensus 289 g~V~IWdvd~~~~~p~~~~~ 308 (811)
+.|.-+|-.+.++..|....
T Consensus 297 gai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 297 GAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred CceeecCcccceEEEecCCC
Confidence 55555666665555554443
Done!