Query 003556
Match_columns 811
No_of_seqs 787 out of 3343
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 18:06:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003556.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1605-1609//hhsearch_pdb/003556hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 339.3 42.5 288 9-297 101-410 (410)
2 3ow8_A WD repeat-containing pr 1.0 1 1 322.7 43.5 292 6-297 22-320 (321)
3 3dm0_A Maltose-binding peripla 1.0 1 1 318.1 45.4 289 8-297 374-692 (694)
4 1got_B GT-beta; complex (GTP-b 1.0 1 1 316.1 46.9 288 6-295 45-340 (340)
5 3frx_A Guanine nucleotide-bind 1.0 1 1 315.2 45.8 292 6-299 7-318 (319)
6 3iz6_a 40S ribosomal protein R 1.0 1 1 314.9 33.7 295 5-300 55-377 (380)
7 1nr0_A Actin interacting prote 1.0 1 1 311.9 42.1 285 14-302 16-359 (611)
8 2pbi_B Guanine nucleotide-bind 1.0 1 1 309.1 45.0 288 7-295 55-354 (354)
9 1nr0_A Actin interacting prote 1.0 1 1 308.1 41.5 293 6-301 49-400 (611)
10 2xzm_R RACK1; ribosome, transl 1.0 1 1 307.2 42.6 291 6-299 11-341 (343)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=339.31 Aligned_cols=288 Identities=27% Similarity=0.500 Sum_probs=272.8
Q ss_pred EEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 89983379877999992089939999978991999988999348996278999589999599999999988990999987
Q 003556 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (811)
Q Consensus 9 i~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~I~IWDl 88 (811)
...+.+|.+.|++++|+| ++.++++|+.||+|++||+.+++....+.+|...|.+++|++++.+|++|+.|++|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred EEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 076616677689999969-9998999938985999989999377888166786878998599999999918981999958
Q ss_pred CCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 99839999828898859999917998999997999199998899918999816898859999938999999997899299
Q 003556 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (811)
Q Consensus 89 ~t~~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fspdg~~Lvsgs~Dg~I~ 168 (811)
.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++.++..+.+|...+.++.|++++.++++++.|+.|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEE
T ss_conf 99826699828999778999967999999996899699998999948999927886289999989999999991899099
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEECC--------------------CCEEEEEECCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 9988999289997328998699999179--------------------98999997999199998899819987289998
Q 003556 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPH--------------------EFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (811)
Q Consensus 169 iwDl~t~~~i~~~~~h~~~V~si~fspd--------------------g~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~~~ 228 (811)
+||+.++.+...+..|...|.++.|+|+ +.+|++|+.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 99898974366733787458999985865543101212555556678888999993898499998899966999977888
Q ss_pred CEEEEEEECCCCEEEEEECCC-EEEEEECCCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCCEEEEEEEC
Q ss_conf 826999906999999997898-999994698221001035651157663-299799999979929999902
Q 003556 229 GVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 229 ~I~si~fspdg~~Lasgs~d~-I~Iwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
.|++++|+|+|.+|++++.|+ +++|++...++...+..+...+.++.+ +++.++++++.|+.|++|++.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 58999994998999999597929999899990689984777868999982899999999279948997379
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=322.68 Aligned_cols=292 Identities=23% Similarity=0.407 Sum_probs=270.2
Q ss_pred CEEEEEEECCCCCEEEEEEEEC---CCCEEEEEECCCEEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 5158998337987799999208---993999997899199998899934--89962789995899995999999999889
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 6 ~~ki~~l~~H~~~V~~iafsp~---~~~lLatgs~DG~I~IWdi~~~~~--i~~l~~h~~~V~~I~fspdg~~Lasgs~D 80 (811)
...+..+.+|.+.|++++|+|+ ++.+|++|+.|++|++|++..... ...+.+|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred HHEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 00455215688967999982488888888999849998999889899743666005677888999988999989999379
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 90999987998399998288988599999179989999979991999988999189998168988599999389999999
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (811)
Q Consensus 81 G~I~IWDl~t~~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fspdg~~Lvs 160 (811)
+.|++||+.+++.+..+..+...+.+++|+|++++|++++.+|.|++|+++.++....+..+...+.+++|+|++++|++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEE
T ss_conf 80999978999798999379856799999999998999838991999986799466774389942999999899999999
Q ss_pred EECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 97899299998899928999732899869999917998999997999199998899819987289998826999906999
Q 003556 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (811)
Q Consensus 161 gs~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~~~~I~si~fspdg~ 240 (811)
++.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++.++.+..+..|...|.+++|+|++.
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
T ss_conf 92898399999999909999802589601899948999899990998099987899632589868888268999979999
Q ss_pred EEEEEECC-CEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCCEEEEEEEC
Q ss_conf 99999789-8999994698221001035651157663-299799999979929999902
Q 003556 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 241 ~Lasgs~d-~I~Iwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
+|++++.+ .+++|++...++...+..+...+..+.+ +++..|++++.|+.|++|++.
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 89998189809999499988888983787738999998999999997589808999577
No 3
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=318.07 Aligned_cols=289 Identities=26% Similarity=0.440 Sum_probs=254.5
Q ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 589983379877999992089939999978991999988999-----348996278999589999599999999988990
Q 003556 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (811)
Q Consensus 8 ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~-----~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~ 82 (811)
....+.+|.+.|+|++|++++..+|++|+.|++|++|++.+. .....+.+|...|.+++|++++.+|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred HHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 12110467740699986699888899980899489997568875555333242588884799999799999999808992
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEE---ECCCCCEEEEEECCCC--CE
Q ss_conf 999987998399998288988599999179989999979991999988999189998---1689885999993899--99
Q 003556 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDG--RW 157 (811)
Q Consensus 83 I~IWDl~t~~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l---~~h~~~I~si~fspdg--~~ 157 (811)
|++||+.++.....+.+|...|.+++|+|++.+|++++.|+.|++||.......... .+|...|.+++|+|++ ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECCCCCCE
T ss_conf 89997999951368867999889999908999899994889799997899854043037788878679999917988655
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 99997899299998899928999732899869999917998999997999199998899819987289998826999906
Q 003556 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (811)
Q Consensus 158 Lvsgs~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~~~~I~si~fsp 237 (811)
+++++.|+.|++||++.+++...+.+|.+.|.+++|+|++.+|++++.|+.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 612 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP 612 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECS
T ss_pred EEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCC-CCEEEEEECC
T ss_conf 999968985999989999278998678888889999189898999958994999988999567883389-9478999859
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECCCC-------------------CEEEEEE-CCCCEEEEEECCCEEEEEEEC
Q ss_conf 99999999789899999469822100103565-------------------1157663-299799999979929999902
Q 003556 238 DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------------------RLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (811)
Q Consensus 238 dg~~Lasgs~d~I~Iwd~~~~~~~~~~~~~~~-------------------~i~~l~~-~dg~lLasg~~Dg~V~IWdvd 297 (811)
++.+++++.++++++|++........+..... .+..+.+ +++++|++++.||.|++|++.
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 98689997699789998999987332002456532002456645677404775148986899989997589849998535
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=316.10 Aligned_cols=288 Identities=25% Similarity=0.418 Sum_probs=265.0
Q ss_pred CEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 51589983379877999992089939999978991999988999348996278999589999599999999988990999
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (811)
Q Consensus 6 ~~ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~I~I 85 (811)
......+.+|.+.|++++|+| ++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++.++++|+.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CHHHEEECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 211001048778368999889-9999999818896899989998743376038861889999999999999808981999
Q ss_pred EECCCC----EEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 987998----3999982889885999991799899999799919999889991899981689885999993899999999
Q 003556 86 WDLEEA----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (811)
Q Consensus 86 WDl~t~----~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fspdg~~Lvsg 161 (811)
|++.+. .....+.+|...+.++.|++++ .+++++.|+.|++||+.++.++..+.+|...|.+++|+|++.+++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EECCCCCCCCEEEEEECCCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 97966888613677844877638999987999-69999899929999899991889976999866899998999999999
Q ss_pred ECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCC--CCCEEEEEEECCC
Q ss_conf 78992999988999289997328998699999179989999979991999988998199872899--9882699990699
Q 003556 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDG 239 (811)
Q Consensus 162 s~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~--~~~I~si~fspdg 239 (811)
+.|+.|++||++++.....+.+|...|.+++|+|++.+|++++.|+.|++||++.++.+..+... ...|.+++|+|+|
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred ECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCC
T ss_conf 38993999778998167897487687799999499998999748981999988999189997268852416999998999
Q ss_pred CEEEEEECCC-EEEEEECCCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
Q ss_conf 9999997898-999994698221001035651157663-2997999999799299999
Q 003556 240 RTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 240 ~~Lasgs~d~-I~Iwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
++|++|+.++ +++|+.........+..+...+.++.+ +++.+|++++.|+.|++|+
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 9999977999099988413838658505778488999829999899972886189559
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=1.00 E-value=1 Score=315.18 Aligned_cols=292 Identities=23% Similarity=0.435 Sum_probs=260.5
Q ss_pred CEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 5158998337987799999208993999997899199998899-----93489962789995899995999999999889
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----PNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (811)
Q Consensus 6 ~~ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~-----~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~D 80 (811)
.....++.+|.+.|++++|+|+++++|++|+.|++|++|++.. +..+..+.+|...|.+++|++++.++++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECC
T ss_conf 99997990554217899806999648998268862999537788752352326970780027899987999999999389
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCC------
Q ss_conf 90999987998399998288988599999179989999979991999988999189998168988599999389------
Q 003556 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------ 154 (811)
Q Consensus 81 G~I~IWDl~t~~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fspd------ 154 (811)
++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++ +.++..+.+|...+.++.|.|.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 989999899897048973679968999996999999999489929999779-9808998426785897898268888888
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf 99999997899299998899928999732899869999917998999997999199998899819987289998826999
Q 003556 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (811)
Q Consensus 155 g~~Lvsgs~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~~~~I~si~ 234 (811)
+..+++++.|+.|++||++..+....+.+|...|.+++|+|++.+|++++.|+.|++||+..++.+..+..+ ..+.+++
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 244 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLA 244 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC-CCEEEEE
T ss_conf 559999908997999889864201024477785799999699999999858996999999999578996389-9578999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCEEEEEEC--------CCCCEEEEEE-CCCCEEEEEECCCEEEEEEECCC
Q ss_conf 90699999999789899999469822100103--------5651157663-29979999997992999990299
Q 003556 235 FNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV--------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (811)
Q Consensus 235 fspdg~~Lasgs~d~I~Iwd~~~~~~~~~~~~--------~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdvd~~ 299 (811)
|+|++.+++++..+++++|+++.......+.. +...+..+.+ ++|++|++++.|+.|++|++.+.
T Consensus 245 ~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ECCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 94898899999089719997176725631586302346676763457899899979998404755999997626
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=314.92 Aligned_cols=295 Identities=23% Similarity=0.376 Sum_probs=259.9
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 55158998337987799999208993999997899199998899934899627899958999959999999998899099
Q 003556 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (811)
Q Consensus 5 r~~ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~I~ 84 (811)
.....+.+.+|.+.|++++|+| ++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++|+.|+.++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred EEEEEECCCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 1398200004534778999968-999899991898099987888860148855998789999989999899954798589
Q ss_pred EEECCCCE-------EEEEECCCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCCEEEEEE-----ECCCCCEEEEEE
Q ss_conf 99879983-------999982889885999991799-89999979991999988999189998-----168988599999
Q 003556 85 LWDLEEAK-------IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRF 151 (811)
Q Consensus 85 IWDl~t~~-------~i~~l~~h~~~I~si~fspdg-~~Lasgs~Dg~I~IwDi~~~~~i~~l-----~~h~~~I~si~f 151 (811)
+|++.... ....+.+|...+.++.|.|++ ..|++|+.|+.|++||+.++..+..+ .+|...+.++.|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 99897775556773312640689754689999648997899977998199998677957899605667887567699992
Q ss_pred CC-CCCEEEEEECCCEEEEEECC-CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCC--
Q ss_conf 38-99999999789929999889-992899973289986999991799899999799919999889981998728999--
Q 003556 152 TP-DGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-- 227 (811)
Q Consensus 152 sp-dg~~Lvsgs~Dg~I~iwDl~-t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~~-- 227 (811)
++ ++.+|++|+.|+.|++||++ ....+..+.+|.+.|.+++|+|++.+|++++.|++|++||+++++.+..+..+.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 06999989999789869999788897346998874887579999169996999838996999988899688986156555
Q ss_pred -----CCEEEEEEECCCCEEEEEECC-CEEEEEECCCCEEEEE----ECCCCCEEEEEE-CCCCEEEEEECCCEEEEEEE
Q ss_conf -----882699990699999999789-8999994698221001----035651157663-29979999997992999990
Q 003556 228 -----SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (811)
Q Consensus 228 -----~~I~si~fspdg~~Lasgs~d-~I~Iwd~~~~~~~~~~----~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWdv 296 (811)
..+.+++|+|+|.+|++|+.+ .+++|+....+....+ ..+...+.++.+ +++.+|++|+.|+.|++|++
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 66556863899988999989999799979999887781578970236777784579998999998999608998899953
Q ss_pred CCCC
Q ss_conf 2997
Q 003556 297 DISR 300 (811)
Q Consensus 297 d~~~ 300 (811)
...+
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCC
T ss_conf 7876
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=311.85 Aligned_cols=285 Identities=16% Similarity=0.271 Sum_probs=177.7
Q ss_pred CCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--
Q ss_conf 379877999992089939999978991999988999348996278999589999599999999988990999987998--
Q 003556 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-- 91 (811)
Q Consensus 14 ~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~I~IWDl~t~-- 91 (811)
.+.+.+.+++|+| +++++++++ ++.|++|++.+++....+.+|...|++++|+|++.+|++|+.||+|++||+.++
T Consensus 16 ~~~g~~~~~~~sp-dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 16 TARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCEEEEEECC-CCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 4068236976679-999799679-99799945787242737658998659999999996899994899789948989841
Q ss_pred EEEEEECCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCE
Q ss_conf 3999982889885999991799899999799----9199998899918999816898859999938999-9999978992
Q 003556 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNT 166 (811)
Q Consensus 92 ~~i~~l~~h~~~I~si~fspdg~~Lasgs~D----g~I~IwDi~~~~~i~~l~~h~~~I~si~fspdg~-~Lvsgs~Dg~ 166 (811)
.....+.+|...|.+++|+|++++|++++.+ +.|++||. +.....+.+|...|.+++|+|++. .|++++.|+.
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC--CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCE
T ss_conf 5667622557844899989999979999899773669999638--99763254788983699988999829999928980
Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEEECCC
Q ss_conf 9999889992899973289986999991799899999799919999889981998728-------999882699990699
Q 003556 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-------PETSGVRCLTFNPDG 239 (811)
Q Consensus 167 I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~-------~~~~~I~si~fspdg 239 (811)
|++||...+++...+.+|...|.+++|+|++.+|++++.|++|++||+.+++.+..+. .|.+.|.+++|+|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf 99997999757665200257169999979999899998999199988999828665136643235667878999997999
Q ss_pred CEEEEEECC-CEEEEEECCCCEEEEE-------------------------------------------ECCCCCEEEEE
Q ss_conf 999999789-8999994698221001-------------------------------------------03565115766
Q 003556 240 RTLLCGLHE-SLKVFSWEPIRCHDAV-------------------------------------------DVGWSRLSDLN 275 (811)
Q Consensus 240 ~~Lasgs~d-~I~Iwd~~~~~~~~~~-------------------------------------------~~~~~~i~~l~ 275 (811)
++|++++.| .+++|++...++...+ ..+...+..+.
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEE
T ss_conf 99999908980999968887013440478876640689997388799995899689996889974469837888889999
Q ss_pred E-CCCCEEEEEECCCEEEEEEECCCCCE
Q ss_conf 3-29979999997992999990299711
Q 003556 276 V-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (811)
Q Consensus 276 ~-~dg~lLasg~~Dg~V~IWdvd~~~~~ 302 (811)
+ +++++|++++.|+.|++|++..+...
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EECCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 9189998999958984999978879256
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=309.09 Aligned_cols=288 Identities=20% Similarity=0.364 Sum_probs=262.8
Q ss_pred EEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 15899833798779999920899399999789919999889993489962789995899995999999999889909999
Q 003556 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (811)
Q Consensus 7 ~ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~~~i~~l~~h~~~V~~I~fspdg~~Lasgs~DG~I~IW 86 (811)
.....+.+|.+.|+|++|+| ++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEECCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 78799648898088999989-99989999289829999899987535774278877999998999979971389988999
Q ss_pred ECCCC------EEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECC--CCCEE
Q ss_conf 87998------39999828898859999917998999997999199998899918999816898859999938--99999
Q 003556 87 DLEEA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--DGRWV 158 (811)
Q Consensus 87 Dl~t~------~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fsp--dg~~L 158 (811)
++... .....+.+|...|.++.|+|++..|++++.|+.|++||+++++++..+.+|...|.++.|+| ++.+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCEE
T ss_conf 97425665533331163066784789999689999999918995899767778199999278998699998757999999
Q ss_pred EEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCC--CCCEEEEEEE
Q ss_conf 99978992999988999289997328998699999179989999979991999988998199872899--9882699990
Q 003556 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFN 236 (811)
Q Consensus 159 vsgs~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~~~~~--~~~I~si~fs 236 (811)
++++.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|++|++||++....+..+..+ ...+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE
T ss_conf 99947995999988899277983588788179999589998999969981999988899678887478740345599994
Q ss_pred CCCCEEEEEECC-CEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
Q ss_conf 699999999789-8999994698221001035651157663-2997999999799299999
Q 003556 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (811)
Q Consensus 237 pdg~~Lasgs~d-~I~Iwd~~~~~~~~~~~~~~~~i~~l~~-~dg~lLasg~~Dg~V~IWd 295 (811)
|+|.+|++++.+ .+++|++........+..+...+..+.+ +++++|++++.|+.|++|+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 7999999997899299998988955779987899578999989999999982888889619
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=308.07 Aligned_cols=293 Identities=22% Similarity=0.314 Sum_probs=254.6
Q ss_pred CEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCEEEEEECC---
Q ss_conf 51589983379877999992089939999978991999988999--3489962789995899995999999999889---
Q 003556 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--- 80 (811)
Q Consensus 6 ~~ki~~l~~H~~~V~~iafsp~~~~lLatgs~DG~I~IWdi~~~--~~i~~l~~h~~~V~~I~fspdg~~Lasgs~D--- 80 (811)
...+..+.+|...|++++|+| ++++|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++.+|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred CCCCEEECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 242737658998659999999-9968999948997899489898415667622557844899989999979999899773
Q ss_pred -CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf -9099998799839999828898859999917998-99999799919999889991899981689885999993899999
Q 003556 81 -GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (811)
Q Consensus 81 -G~I~IWDl~t~~~i~~l~~h~~~I~si~fspdg~-~Lasgs~Dg~I~IwDi~~~~~i~~l~~h~~~I~si~fspdg~~L 158 (811)
+.|++|| .++....+.+|...|.+++|+|++. .|++++.|+.|++||....++...+.+|...|.+++|+|++.+|
T Consensus 128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE
T ss_conf 66999963--8997632547889836999889998299999289809999799975766520025716999997999989
Q ss_pred EEEECCCEEEEEECCCCEEEEEEE-------CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE---------
Q ss_conf 999789929999889992899973-------2899869999917998999997999199998899819987---------
Q 003556 159 VSGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS--------- 222 (811)
Q Consensus 159 vsgs~Dg~I~iwDl~t~~~i~~~~-------~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------- 222 (811)
++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|++.+|++++.|++|++||+.+++.+..
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 99989991999889998286651366432356678789999979999999990898099996888701344047887664
Q ss_pred ----------------------------------ECCCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCEEEEE-EC
Q ss_conf ----------------------------------28999882699990699999999789-8999994698221001-03
Q 003556 223 ----------------------------------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DV 266 (811)
Q Consensus 223 ----------------------------------~~~~~~~I~si~fspdg~~Lasgs~d-~I~Iwd~~~~~~~~~~-~~ 266 (811)
+.+|...|++++|+|+|++|++++.+ .+++|+.....+...+ ..
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred EEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCC
T ss_conf 06899973887999958996899968899744698378888899999189998999958984999978879256321667
Q ss_pred CCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCC
Q ss_conf 56511576632997999999799299999029971
Q 003556 267 GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (811)
Q Consensus 267 ~~~~i~~l~~~dg~lLasg~~Dg~V~IWdvd~~~~ 301 (811)
+...+..+.+..+..+++++.|+.+++|++.....
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred CCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 76507899987899699998489668954688543
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=1.00 E-value=1 Score=307.20 Aligned_cols=291 Identities=22% Similarity=0.398 Sum_probs=247.9
Q ss_pred CEEEEEEECCCCCEEEEEE-----EECCCCEEEEEECCCEEEEEECCCC-------CEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 5158998337987799999-----2089939999978991999988999-------348996278999589999599999
Q 003556 6 AYKLQEFVAHSSTVNCLKI-----GRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVL 73 (811)
Q Consensus 6 ~~ki~~l~~H~~~V~~iaf-----sp~~~~lLatgs~DG~I~IWdi~~~-------~~i~~l~~h~~~V~~I~fspdg~~ 73 (811)
......+.+|.+.|++++| ++.++.+|++|+.|++|++|++... .....+.+|...|.+++|++++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred EEEEEEECCCHHHHHHEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCE
T ss_conf 66601450321343010567776027998899997699989999787577665134644021157786689999999988
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEE---CCCCCEEEEE
Q ss_conf 9999889909999879983999982889885999991799899999799919999889991899981---6898859999
Q 003556 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIR 150 (811)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~i~~l~~h~~~I~si~fspdg~~Lasgs~Dg~I~IwDi~~~~~i~~l~---~h~~~I~si~ 150 (811)
+++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+... ...... .|...+.+++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCEEEEEE
T ss_conf 999859994999988999699977377886799999899998999859998999744687-3144302568776466644
Q ss_pred ECCCC----------CEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-CEE
Q ss_conf 93899----------9999997899299998899928999732899869999917998999997999199998899-819
Q 003556 151 FTPDG----------RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FEL 219 (811)
Q Consensus 151 fspdg----------~~Lvsgs~Dg~I~iwDl~t~~~i~~~~~h~~~V~si~fspdg~~Lasgs~Dg~I~IwDl~~-~~~ 219 (811)
|+|++ .++++++.|+.|++|| ........+..|...|.+++|+|++.+|++|+.|+.|++||+.. ...
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred ECCCCCCCCCCCCCCCEEEEECCCCEEEEEC-CCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 0245444432478887799976999899985-897145897286146539999899999999869982999989887415
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEE--EEE-----------CCCCCEEEEEE-CCCCEEEEE
Q ss_conf 9872899988269999069999999978989999946982210--010-----------35651157663-299799999
Q 003556 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD--AVD-----------VGWSRLSDLNV-HEGKLLGCS 285 (811)
Q Consensus 220 i~~~~~~~~~I~si~fspdg~~Lasgs~d~I~Iwd~~~~~~~~--~~~-----------~~~~~i~~l~~-~dg~lLasg 285 (811)
...+ .+...|.+++|+|++.+++++.++++++|++....... .+. .+...+..+.+ +++++|++|
T Consensus 249 ~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 249 QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred CEEE-CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCCEEEEEECCCCCEEEEE
T ss_conf 1650-599827899999998799998889889999279987734886227323345304778734799988998768886
Q ss_pred ECCCEEEEEEECCC
Q ss_conf 97992999990299
Q 003556 286 YNQSCVGVWVVDIS 299 (811)
Q Consensus 286 ~~Dg~V~IWdvd~~ 299 (811)
+.||.|++|+++++
T Consensus 328 ~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 328 FTDGVIRTFSFETS 341 (343)
T ss_dssp ETTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEECC
T ss_conf 38853999999813
Done!