BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003557
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/389 (45%), Positives = 244/389 (62%), Gaps = 5/389 (1%)
Query: 190 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 249
P+H +L NL NI E + A Y+ L V +A +NLA + +QQG +A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 250 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 309
Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 310 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 369
++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LP
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185
Query: 370 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXX 429
SV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 186 SVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKL----SDGRLRVG 241
Query: 430 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 489
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S +
Sbjct: 242 YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIP 301
Query: 490 SD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 548
+ A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++T
Sbjct: 302 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 361
Query: 549 DEFVSPLRYAHIYSEKLVHVPHCYFVNDY 577
D+ SP A YSEKL ++PH +F+ D+
Sbjct: 362 DQETSPAEVAEQYSEKLAYMPHTFFIGDH 390
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 138/206 (66%), Gaps = 1/206 (0%)
Query: 593 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 652
RS YGLPED ++ FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++ YA
Sbjct: 514 RSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQ 573
Query: 653 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 712
G+ ++IIF+ VA K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +
Sbjct: 574 NMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETL 633
Query: 713 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA 772
A+RVA S G E+I + +EYE+ AV L D + L+ + K+ R++ PLF+T
Sbjct: 634 ASRVAASQLTCLGC-LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTK 692
Query: 773 RWVKNLERSYFKMWSLHCSGQKPQHF 798
++ LER Y +MW + +G KP H
Sbjct: 693 QYTMELERLYLQMWEHYAAGNKPDHM 718
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 21 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 80
P D+ +NL N+ + QG ++EA Y +AL + P FA A SNLA + + G L AL +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 81 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG 139
YKEA+++ PTF DAY N+GN K + Q A+ CY RA+Q P A A NLAS + + G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 140 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 172
AI Y+ A+ P F +AY NL + L+ V
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
+G + EA + R+AL + P AHSNL ++++ QG +QEA Y EA+RI PTFA A+
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
SN+ E D+ ALQ Y A+++ P F DA+ NL +++K G EAI Y+ A++
Sbjct: 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140
Query: 122 RPN-AIAFGNLA 132
+P+ A+ NLA
Sbjct: 141 KPDFPDAYCNLA 152
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
++G+L EA ++A+ ++P DA+SN+GN +K VQ A CY A++I P FA A
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100
SNLA + +SG++ A+ Y+ A+KLKP FPDAY NL +
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+A + NLA+ E+G + A+ Y++A+ P F A++NL + L+ G++ EA+ Y
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ + + P+ A +N+GN E + A Y + + + +NLA I+K GN
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
+AI+ Y L++ P D N + + + TD + + ++I
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 324 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 383
L P+ P T LL+ + +C W D + ++V + + V +V+PF ++
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 384 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 443
L +R A +I AS L P P+ +VS+ FG HP L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 444 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 501
++F + ++++ +A S +DG+ R R ++A DV+A+ AK I
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 502 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 561
I +L +L G+ G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F P Y
Sbjct: 283 IDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 562 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 621
SE ++ + + +D + V +P P R+ GLPE + CFN YK++P+
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 622 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 681
+LR VP+S LWLL P + RLRA+A AQGV +++F +++ R ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 682 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 741
FLDT NAHTT +D LW G P++T P E A RVAGSL GL +EM V + +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 742 AVSLALDRQKLQALTNKLKSVRLTCPLF 769
AV+LA D L AL ++ +R +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 129
+ D R L + AV+ +P A+L L + +G M QR + P + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
L + + + A + +QA P LG+AL+D G+ + A Y + L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 190 PSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 246
P P L N +W L ++ +A +A G PF L+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS----EDASAAEQ 177
Query: 247 ISC 249
++C
Sbjct: 178 LAC 180
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 50 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109
A+R +P +AW LA + GD + + L P P+A LG V
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 110 EAIMCYQRAVQTRPN 124
EA + Q+A P
Sbjct: 75 EAAVLLQQASDAAPE 89
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 324 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 383
L P+ P T LL+ + +C W D + ++V + + V +V+PF ++
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 384 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 443
L +R A +I AS L P P+ +VS+ FG HP L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 444 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 501
++F + ++++ +A S +DG+ R R ++A DV+A+ AK I
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 502 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 561
I +L +L G+ G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F P Y
Sbjct: 283 IDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 562 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 621
SE ++ + + +D + V +P P R+ GLPE + CFN YK++P+
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 622 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 681
+LR VP+S LWLL P + RLRA+A AQGV +++F +++ R ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 682 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 741
FLDT NAHTT +D LW G P++T P E A RVAGSL GL +EM V + +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 742 AVSLALDRQKLQALTNKLKSVRLTCPLF 769
AV+LA D L AL ++ +R +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 71 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 129
+ D R L + AV+ +P A+L L + +G M QR + P + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 189
L + + + A + +QA P LG+AL+D G+ + A Y + L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 190 PSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 246
P P L N +W L ++ +A +A G PF L+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS----EDASAAEQ 177
Query: 247 ISC 249
++C
Sbjct: 178 LAC 180
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 50 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109
A+R +P +AW LA + GD + + L P P+A LG V
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 110 EAIMCYQRAVQTRPN 124
EA + Q+A P
Sbjct: 75 EAAVLLQQASDAAPE 89
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 229 bits (585), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 198/337 (58%), Gaps = 1/337 (0%)
Query: 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 64
RL+ +A A+ NPLL +A+SNLGN+ K +G +QEA Y ALR++P F + NL
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 65 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A + +GD+ A+Q Y A++ P +LGN+ KALG +EA CY +A++T+PN
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 125 -AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
A+A+ NL + +G+ +AI ++++A+ DP FL+AY NLGN LK+ D A+ Y
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 184 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+ LSL P+H NL +Y E ++ A Y+ + + + NLA K++G+
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 244 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
A+A CYN LR+ P AD L N N +E G + +A++ Y +A+ + P A AH+NLAS
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 304 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
+ G ++ A+ YK+A+ + P F +A N+ +TL+
Sbjct: 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 161/272 (59%), Gaps = 1/272 (0%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G + A Q AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSN
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 123
L +F G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 124 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
N A+ GNLA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CY
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
N L L P+H +L NL NI E + A Y+ L V +A +NLA + +QQG
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 243 YADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
+A+ Y E +RI P AD N GNT KE+
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 114 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
C Q Q N L+S +++ + D + + AI +P EAY+NLGN K+ G
Sbjct: 22 CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81
Query: 174 RVDEAIQCYNQCLSLQP------------------------SHPQAL----------TNL 199
++ EAI+ Y L L+P ++ AL ++L
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141
Query: 200 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 259
GN+ L A + Y + + ++NL ++ QG AI + + + +DP
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 260 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 319
D +N GN KE A+ Y+RA+++ P A H NLA Y + G ++ AI +Y+
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 320 QALLLRPDFPEATCNLLHTLQ 340
+A+ L+P FP+A CNL + L+
Sbjct: 262 RAIELQPHFPDAYCNLANALK 282
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 63/103 (61%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
KG + EA C AL L P D+ +NL N+ + QG ++EA Y +AL + P FA A S
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 105
NLA + + G L AL +YKEA+++ PTF DAY N+GN K +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+G ++ A R+A+ L P DA+ NL N +K +G V EA CY ALR+ PT A + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
NLA + E G++ A++ Y++A+++ P F A+ NL +V + G QEA+M Y+ A++
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 123 PN-AIAFGNLASTYYE 137
P A A+ N+ +T E
Sbjct: 370 PTFADAYSNMGNTLKE 385
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
+G + EA + R+AL + P AHSNL ++++ QG +QEA Y EA+RI PTFA A+S
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 63 NLAGLFMESGD 73
N+ E D
Sbjct: 378 NMGNTLKEMQD 388
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 35
++G+L EA ++A+ ++P DA+SN+GN +K
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 118 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
A++ P +A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 177 EAIQCYNQCLSLQP 190
EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 142
A++L P +A+ NLGN Y G EAI YQ+A++ P +A A+ NL + YY++G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 143 MAILYYKQAIGCDPR 157
AI YY++A+ DPR
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
L L P +A NLGN Y + A YY+ L + + + NL Y +QG+Y
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 245 DAISCYNEVLRIDP 258
+AI Y + L +DP
Sbjct: 121 EAIEYYQKALELDP 134
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P +A NLGN +YYK
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN------------AYYK-- 47
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
QG+Y +AI Y + L +DP +A+ N GN Y + G +
Sbjct: 48 --------------------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 326
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
++G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A A
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
W NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+A++
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Query: 121 TRP 123
P
Sbjct: 132 LDP 134
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+ +
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
P AEA NL +AY G + AI+ Y++AL L P EA NL
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 321 ALLLRPDFPEATCNL 335
AL L P EA NL
Sbjct: 61 ALELDPRSAEAWYNL 75
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 118 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
A++ P NA A+ NL + YY++G D AI YY++A+ DP EA NLGNA + G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 139
A++L P +A+ NLGN Y G EAI YQ+A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 34/151 (22%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
L L P++ +A NLGN +YYK QG+Y
Sbjct: 69 ALELDPNNAEAWYNLGN------------AYYK----------------------QGDYD 94
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+AI Y + L +DP A+ N GN ++ G
Sbjct: 95 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 221 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
A+ G SA + NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Query: 340 Q 340
Q
Sbjct: 122 Q 122
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 34/150 (22%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN------------AYYK-- 55
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 56 --------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSG 309
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
++G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A AW
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 118 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
A++ P NA A+ NL + YY++G D AI YY++A+ P EA NLGNA + G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
A++L P +A+ NLGN Y G EAI YQ+A++ PN
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 221 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
A+ G SA + NL Y +QG+Y +AI Y + L + P A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Query: 340 Q 340
Q
Sbjct: 122 Q 122
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 34/150 (22%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN------------AYYK-- 55
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
QG+Y +AI Y + L + P A+ N GN Y + G +
Sbjct: 56 --------------------QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSG 309
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 96 AIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ P EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 241
L L P++ +A NLGN Y + A YY+ L + + NL ++QG
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
++G +EA + ++AL L P +A NLGN QG EA Y +AL + P A AW
Sbjct: 21 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD +A++YY++A++L P A+ NLGN Y G Q+AI YQ+
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 118 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 173
A++ P NA A+ + YY++G AI Y++A+ DP +A NLGNA + G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG Q+A Y +AL + P A AW NL + + GD +A++YY++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 139
A++L P A+ GN Y G Q+AI YQ+A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 34/150 (22%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G +AI+ Y + L L P++ A NLGN +YYK
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGN------------AYYK-- 55
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
QG+Y AI Y + L +DP A RGN Y + G
Sbjct: 56 --------------------QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQK 95
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSG 309
AI+DY +A+ + P A+A NL +A + G
Sbjct: 96 AIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 221 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
A+ G SA + NL Y +QG+Y AI Y + L +DP A N GN Y + G
Sbjct: 2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 339
AI+ Y +A+ + P A+A +AY G + AI+ Y++AL L P+ +A NL +
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Query: 340 Q 340
Q
Sbjct: 122 Q 122
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G AI YY++A+ DP A+ NLGNA G +AI+ Y +
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 185 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 244
L L P++ +A GN +YYK QG+Y
Sbjct: 69 ALELDPNNAKAWYRRGN------------AYYK----------------------QGDYQ 94
Query: 245 DAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
AI Y + L +DP A N GN ++ G
Sbjct: 95 KAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
++G +A + ++AL L+P A NLGN QG Q+A Y +AL + P A AW
Sbjct: 21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 106
+ + GD +A++ Y++A++L P A NLGN + G
Sbjct: 81 YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 185 CLSLQPSHPQALTNLGN 201
L L P++ +A NLGN
Sbjct: 69 ALELDPNNAEAKQNLGN 85
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 151
+A+ NLGN Y G EAI YQ+A++ PN A A+ NL + YY++G D AI YY++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 152 IGCDPRFLEAYNNLGNALKDVG 173
+ DP EA NLGNA + G
Sbjct: 70 LELDPNNAEAKQNLGNAKQKQG 91
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AVKLKPTFPDAYLNLGNVYKALG 106
A++L P +A NLGN + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 118 AVQTRP-NAIAFGNLASTYYERG 139
A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 221 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 279
A+ G SA + NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 AIQDYIRAITIRPTMAEAHANLASAYKDSG 309
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 256 IDPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 314
+DP +A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 315 IKSYKQALLLRPDFPEATCNLLHTLQ 340
I+ Y++AL L P+ EA NL + Q
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQ 88
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 34/116 (29%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN------------AYYK-- 55
Query: 220 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
QG+Y +AI Y + L +DP A+ N GN ++ G
Sbjct: 56 --------------------QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 61
++G +EA + ++AL L+P +A NLGN QG EA Y +AL + P A A
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80
Query: 62 SNLAGLFMESG 72
NL + G
Sbjct: 81 QNLGNAKQKQG 91
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 124 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 184 QCLSLQP 190
+ L L P
Sbjct: 62 KALELDP 68
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 58 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 117
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 118 AVQTRP 123
A++ P
Sbjct: 63 ALELDP 68
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+A+ NLGN Y G EAI YQ+A++ P +A A+ NL + YY++G D AI YY++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 152 IGCDPR 157
+ DPR
Sbjct: 64 LELDPR 69
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 84 AVKLKP 89
A++L P
Sbjct: 63 ALELDP 68
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 284
G + + NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 285 IRAITIRP 292
+A+ + P
Sbjct: 61 QKALELDP 68
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 260 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 319
+A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 320 QALLLRP 326
+AL L P
Sbjct: 62 KALELDP 68
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 219
EA+ NLGNA G DEAI+ Y + L L P +A NLGN Y + A YY+
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 220 LAV 222
L +
Sbjct: 64 LEL 66
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 55
++G +EA + ++AL L+P +A NLGN QG EA Y +AL + P
Sbjct: 15 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 295 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
AEA NL +AY G + AI+ Y++AL L P EA NL
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 43
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 38 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 97
G ++A + +A+ AI + N A L +L RAL +Y +A++L + AY
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 98 LGNVYKALGMPQEAIMCYQRAVQT-RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 156
GNVY M +EA +++A++ N F L + + Q +A+ Y ++A+ +
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 157 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 203
EA G L + G +DEA+ + P H A N G Y
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 13/196 (6%)
Query: 70 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 129
E GD +A + + +A++ Y+N N+ ++ + A+ Y +A++ +A
Sbjct: 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---- 90
Query: 130 NLASTYYERGQADMAILYYKQAIGCDPRFLEA-------YNNLGNALKDVGRVDEAIQCY 182
A+ YY G + YK+A + L A + LG L + + A+
Sbjct: 91 --ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148
Query: 183 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 242
+ + L + +A G ML A S + A G + F N V Y + N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208
Query: 243 YADAISCYNEVLRIDP 258
A+ ++ + I P
Sbjct: 209 REKALEMLDKAIDIQP 224
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 1/189 (0%)
Query: 105 LGMPQEAIMCYQRAVQ-TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 163
G ++A + +A++ + +AI + N A+ + + A+ +Y +A+ D AY
Sbjct: 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
GN EA + + L + LG + ++ A Y + + +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283
+ + +G +A+S + V DP AD N G TY A++
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 284 YIRAITIRP 292
+AI I+P
Sbjct: 216 LDKAIDIQP 224
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 41/186 (22%)
Query: 15 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 74
+AL L+ A+ GN+ + + +EA + +ALR AG ME+GDL
Sbjct: 82 KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR------------AG--MENGDL 127
Query: 75 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGN 130
+ LG V L P+ A+ QRAV+ N FG
Sbjct: 128 --------------------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
+ G D A+ + DP +A+ N G ++A++ ++ + +QP
Sbjct: 168 CLAN---EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 191 SHPQAL 196
H AL
Sbjct: 225 DHMLAL 230
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 27 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 86
+ ++G+ + +G A Y + L+ P L +M+ G N A++ K+ V
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 87 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAI 145
L T +AY LG+ + Q AI QRA+ A A+ L Y G+ D AI
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 146 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
Y++ I P F+ AY ++G A + G DEA++ +
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP--AAASYYKAT 219
Y ++G+ + G D AI+ Y + L P++ + L LG YM+ LP A S K
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFV 66
Query: 220 LAVTTGLSAPF----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 275
+ TT A + N + KQ AI + ++ + AD G Y +G
Sbjct: 67 VLDTTSAEAYYILGSANFMIDEKQA-----AIDALQRAIALNTVYADAYYKLGLVYDSMG 121
Query: 276 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 318
AI+ Y + I+I+P A+ ++ AY+ G + A+K +
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 238 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 297
+ +G++ AI Y +VL+ DP + L+ G TY +IG DAI+ + + + T AEA
Sbjct: 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75
Query: 298 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ L SA +AAI + ++A+ L + +A
Sbjct: 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 62
KG + A + ++ L +P V+ LG GL +A + + + T A A+
Sbjct: 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77
Query: 63 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 122
L + A+ + A+ L + DAY LG VY ++G +AI Y++ + +
Sbjct: 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137
Query: 123 PNAI-AFGNLASTYYERGQADMAILYY 148
P I A+ ++ Y +G D A+ Y+
Sbjct: 138 PGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%)
Query: 138 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 197
+G D AI YK+ + DP +E LG D+G ++AI+ + + L + +A
Sbjct: 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77
Query: 198 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 257
LG+ + AA + +A+ T + + L ++Y G + AI Y + + I
Sbjct: 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137
Query: 258 P 258
P
Sbjct: 138 P 138
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 95 YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAIG 153
Y+++G+ + G AI Y++ ++ PN + L TY + G + AI K+ +
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 213
D EAY LG+A + AI + ++L + A LG +Y A
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250
Y+ T+++ G + ++ + Y+ +G +A+ +
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%)
Query: 1 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 60
M G N+A + ++ + L+ +A+ LG+ Q A A+ + +A A
Sbjct: 50 MDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109
Query: 61 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 112
+ L ++ G+ ++A++ Y++ + +KP F AY ++G Y+ G+ EA+
Sbjct: 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 85/347 (24%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
N G+ Q A E LR T + +S L + GD N+A+QY+K + L
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116
Query: 89 PTFPD------AYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPNAIAFGNLASTY 135
+ D + NLGN K +G EA +C +R + A NL + Y
Sbjct: 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 136 YERGQA-----------------DMAILYYKQAI---------GCDPRFLEAYNNLGNAL 169
+ +G+ A+ +Y++ + G R A NLGN
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR---ACGNLGNTY 233
Query: 170 KDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
+G AI+ + + L + + + +A +NLGN ++ AA +YK TLA+
Sbjct: 234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 283
L +A SCY + GNTY + AI+
Sbjct: 294 VELGER-------------EVEAQSCY---------------SLGNTYTLLHEFNTAIEY 325
Query: 284 YIRAITIRPTM----AEAHA--NLASAYKDSGHVEAAIKSYKQALLL 324
+ R + I + EA A +L +A+ G E A+K +Q L L
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 107/272 (39%), Gaps = 67/272 (24%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHS------NLGNLMKAQG--LVQEAYSCYLEALRIQP 55
GR +EAA CC + L L L D S NLGN+ A+G L Q + + ++
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA- 198
Query: 56 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQ 109
L RA+++Y+E +KL D A NLGN Y LG Q
Sbjct: 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 110 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 169
AI +Q ++ A FG+ A+ ER A +NLGN+
Sbjct: 241 AAIEHHQERLRI---AREFGDRAA---ER---------------------RANSNLGNSH 273
Query: 170 KDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
+G+ ++A + Y + L+L + Q+ +LGN Y + A Y+ LA+
Sbjct: 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 255
L + GN AI + L+
Sbjct: 334 QELGDRIGEARACWS-LGNAHSAIGGHERALK 364
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 133 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 186
Query: 125 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 187 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 246
Query: 184 QCLSLQ 189
+ L++Q
Sbjct: 247 EALNMQ 252
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 13 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 72
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 241
L + ++ A + L T + P +
Sbjct: 73 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 242 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 133 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 192
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
L + + E A+ +Y++AL L+P + + NL
Sbjct: 193 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 228
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 16 ALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
A+ L+P +D LG L G +A C+ AL ++P + W+ L
Sbjct: 144 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 203
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A+ Y+ A++L+P + + NLG LG +EA+ + A+
Sbjct: 204 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 159 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 218
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G NL + G + +A+ + E L +
Sbjct: 219 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 251
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G ++A C AL++ P + LG + +EA + Y AL +QP + + N
Sbjct: 168 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 227
Query: 64 LAGLFMESGDLNRALQYYKEAVKLK 88
L + G A++++ EA+ ++
Sbjct: 228 LGISCINLGAHREAVEHFLEALNMQ 252
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 196 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 125 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309
Query: 184 QCLSLQ 189
+ L++Q
Sbjct: 310 EALNMQ 315
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 241
L + ++ A + L T + P +
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 242 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
L + + E A+ +Y++AL L+P + + NL
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 16 ALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
A+ L+P +D LG L G +A C+ AL ++P + W+ L
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A+ Y+ A++L+P + + NLG LG +EA+ + A+
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G NL + G + +A+ + E L +
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G ++A C AL++ P + LG + +EA + Y AL +QP + + N
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 64 LAGLFMESGDLNRALQYYKEAVKLK 88
L + G A++++ EA+ ++
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQ 315
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 147 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 200
Query: 125 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 201 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 260
Query: 184 QCLSLQ 189
+ L++Q
Sbjct: 261 EALNMQ 266
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 27 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 86
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 241
L + ++ A + L T + P +
Sbjct: 87 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 242 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 147 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 206
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
L + + E A+ +Y++AL L+P + + NL
Sbjct: 207 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 242
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 16 ALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
A+ L+P +D LG L G +A C+ AL ++P + W+ L
Sbjct: 158 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 217
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A+ Y+ A++L+P + + NLG LG +EA+ + A+
Sbjct: 218 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 173 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 232
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G NL + G + +A+ + E L +
Sbjct: 233 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 265
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G ++A C AL++ P + LG + +EA + Y AL +QP + + N
Sbjct: 182 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
Query: 64 LAGLFMESGDLNRALQYYKEAVKLK 88
L + G A++++ EA+ ++
Sbjct: 242 LGISCINLGAHREAVEHFLEALNMQ 266
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 125 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 184 QCLSLQ 189
+ L++Q
Sbjct: 270 EALNMQ 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 241
L + ++ A + L T + P +
Sbjct: 96 MALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 242 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
L + + E A+ +Y++AL L+P + + NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 16 ALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
A+ L+P +D LG L G +A C+ AL ++P + W+ L
Sbjct: 167 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 226
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A+ Y+ A++L+P + + NLG LG +EA+ + A+
Sbjct: 227 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 182 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 241
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G NL + G + +A+ + E L +
Sbjct: 242 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 274
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G ++A C AL++ P + LG + +EA + Y AL +QP + + N
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 64 LAGLFMESGDLNRALQYYKEAVKLK 88
L + G A++++ EA+ ++
Sbjct: 251 LGISCINLGAHREAVEHFLEALNMQ 275
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 67 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 125 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 183
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 184 QCLSLQ 189
+ L++Q
Sbjct: 270 EALNMQ 275
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 137 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 197 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 241
L + ++ A + L T + P +
Sbjct: 96 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 242 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 299
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 300 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 335
L + + E A+ +Y++AL L+P + + NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 16 ALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 73
A+ L+P +D LG L G +A C+ AL ++P + W+ L
Sbjct: 167 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 226
Query: 74 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
A+ Y+ A++L+P + + NLG LG +EA+ + A+
Sbjct: 227 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 182 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 241
Query: 224 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
G NL + G + +A+ + E L +
Sbjct: 242 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 274
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G ++A C AL++ P + LG + +EA + Y AL +QP + + N
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 64 LAGLFMESGDLNRALQYYKEAVKLK 88
L + G A++++ EA+ ++
Sbjct: 251 LGISCINLGAHREAVEHFLEALNMQ 275
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 22/231 (9%)
Query: 99 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--GCDP 156
GN + EAI Y +A + + N A+ YE+G+ + AI A+ G +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 157 R-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
R +++ +GNA +G + + I+ Y + L+ + LT L N E A
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAEA 130
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271
A Y A L Y + ++ +A+ Y E+++ P A G NR
Sbjct: 131 EA-YVNPEKAEEARLEGKE------YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 272 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
++ +AI D +AI P A+ A+A + A+K Y AL
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-------QIAVKEYASAL 227
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 60 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ-EAIMCYQRA 118
+++ + + + GDL + ++YY++++ T D L N K L + EA + ++A
Sbjct: 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVNPEKA 139
Query: 119 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 178
+ R Y+ + A+ Y + I P Y+N AL + EA
Sbjct: 140 EEARLE-------GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192
Query: 179 IQCYNQCLSLQPSHPQA 195
I N+ + P+ +A
Sbjct: 193 IADCNKAIEKDPNFVRA 209
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 205
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147
Query: 206 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 247
+ L AA +Y+ L++ T L F NL + GN+ DA+
Sbjct: 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207
Query: 248 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Query: 302 ASAYKDSGHVEAAIKSYKQAL 322
S Y G+ ++ Y++A+
Sbjct: 268 QSCYS-LGNTYTLLQDYEKAI 287
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSNLAGLFMESGDLNRALQ 79
A NLGN G ++A + + L I F A+SNL ++ G+ A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 80 YYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 112
YYK+ + L D + +LGN Y L ++AI
Sbjct: 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 205
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143
Query: 206 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 247
N L AA Y+ L++ T L F NL + GN+ DA+
Sbjct: 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203
Query: 248 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 302 ASAYKDSGHVEAAIKSYKQAL 322
S Y G+ ++ Y++A+
Sbjct: 264 QSCYS-LGNTYTLLQDYEKAI 283
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSNLAGLFMESGDLNRALQ 79
A NLGN G ++A + + L I F A+SNL ++ G+ A +
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 80 YYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 112
YYK+ + L D + +LGN Y L ++AI
Sbjct: 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 160 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 205
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 86 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 145
Query: 206 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 247
N L AA Y+ L++ T L F NL + GN+ DA+
Sbjct: 146 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 205
Query: 248 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 206 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 265
Query: 302 ASAYKDSGHVEAAIKSYKQAL 322
S Y G+ ++ Y++A+
Sbjct: 266 QSCYS-LGNTYTLLQDYEKAI 285
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSNLAGLFMESGDLNRALQ 79
A NLGN G ++A + + L I F A+SNL ++ G+ A +
Sbjct: 187 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 246
Query: 80 YYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 112
YYK+ + L D + +LGN Y L ++AI
Sbjct: 247 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 285
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 242 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
N+ A+ Y + + ++P A NR Y ++G A+QD RAI I P ++A+ +
Sbjct: 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86
Query: 302 ASAYKD-SGHVEAAIKSYKQALLLRPDFPEATCNL 335
A + HVEA + YK+AL L PD NL
Sbjct: 87 GLALSSLNKHVEA-VAYYKKALELDPDNETYKSNL 120
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
+ A+ Y +A++ P NA+ F N A+ Y + G A+ ++AI DP + +AY +G
Sbjct: 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 199
AL + + EA+ Y + L L P + +NL
Sbjct: 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 250
+ + L GN M+ AA +Y + + + F N A Y + GNYA A+
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 251 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 301
+ IDP + G + + +A+ Y +A+ + P +NL
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 257 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 316
D A+ L GN ++ A+ Y +AI + P A N A+AY G+ A++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 317 SYKQALLLRPDFPEA 331
++A+ + P + +A
Sbjct: 68 DCERAICIDPAYSKA 82
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 39/297 (13%)
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-A 127
++ GDL + + + A+ P +A+ LG Q AI+ QR ++ +PN + A
Sbjct: 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 128 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 187
LA +Y A K I +P++ K + + + + +S
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKY-----------KYLVKNKKGSPGLTRRMS 184
Query: 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA---VTTGLSAPFNNLAVIYKQQGNYA 244
P L + +Y+E A++ + + TGL V++ G +
Sbjct: 185 KSPVDSSVLEGVKELYLE-------AAHQNGDMIDPDLQTGL-------GVLFHLSGEFN 230
Query: 245 DAISCYNEVLRIDPLAADGLVNR-GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 303
AI +N L + P L NR G T R +A++ Y RA+ I+P + NL
Sbjct: 231 RAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 304 AYKDSGHVEAAIKSYKQALLLRPD--------FPEATCNLLHTLQCVCSWEDRDRMF 352
+ + G A+ ++ AL L+ P + N+ L+ S D+ +F
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
D + LG L G A + AL ++P W+ L A++ Y A
Sbjct: 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273
Query: 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
++++P F + NLG LG +EA+ + A+
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 62 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 121
+ L LF SG+ NRA+ + A+ ++P + LG +EA+ Y RA++
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276
Query: 122 RPNAI 126
+P I
Sbjct: 277 QPGFI 281
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 300
GN DA+ CY+E +++DP NR Y + G A +D + + ++P + ++
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 301 LASAYKDSGHVEAAIKSYKQALLLRPDFPE 330
A+A + E A ++Y++ L + P+
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 90
GN + G + +A CY EA+++ P + +SN + + + GD +A + + V LKP
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
+ Y + L +EA Y+ ++ N
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 99 GNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPR 157
GN ++G +A+ CY A++ P N + + N ++ Y ++G A + + P
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 202
+ + Y+ AL+ + R +EA + Y + L + ++PQ L N+
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323
L +GN +G + DA+Q Y AI + P ++N ++AY G + A + + +
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 324 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHA 376
L+PD+ + L+ + +E+ R + EG+ N + +Q A
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYE--EGLKHEANNPQLKEGLQNMEA 117
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 4 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
G +++A QC +A+ L+P +SN +G Q+AY + + ++P + +S
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
A A + Y+E +K + P L N+
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225
GN VG +D+A+QCY++ + L P + +N Y + A T+ +
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRID---PLAADGLVN 266
++ A + + +A Y E L+ + P +GL N
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 151
DAY+ LG Y G ++A + ++A++ P+ A A LA + + +A Y++A
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKA 97
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 209
+ D R NN G L + R +EA Q + +L P + NLG + ++
Sbjct: 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQXKKP 157
Query: 210 PAAASYYKATL 220
A Y++ +L
Sbjct: 158 AQAKEYFEKSL 168
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 151
DAY+ LG Y G ++A + ++A++ P+ A A LA + + +A Y++A
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA 110
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 209
+ D R NN G L + R +EA Q + +L P + NLG + ++
Sbjct: 111 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 170
Query: 210 PAAASYYKATL 220
A Y++ +L
Sbjct: 171 AQAKEYFEKSL 181
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 63/160 (39%)
Query: 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 222 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281
L + Y Q Y A+ +V +P+ + G K +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAI 130
Query: 282 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 151
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
+P LG ALK++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 212 AASYYKATLAVTTGLS 227
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
G TY ++ + A+ I+ P L A K+ G + AI S+K AL LRP+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 32 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 91
NL+ AQ L+QE+ + + PT ++ LA + + +++++AV L P +
Sbjct: 258 NLLDAQVLLQES-------INLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309
Query: 92 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQ 150
P Y + G +Y L + A +Q+A P N + LA Y++G+ + ++ +
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369
Query: 151 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 210
P E L D G D AI+ Y+ L+ + +G + + +L
Sbjct: 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429
Query: 211 AAAS 214
+S
Sbjct: 430 RQSS 433
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
N GN EA Y A+ + P + +SN++ ++ +GDL + +++ +A+++K
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 89 PTFPDAYLNLGNVYKALG 106
P A L + ++LG
Sbjct: 90 PDHSKALLRRASANESLG 107
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
+A+ N F + + N A++YY+ A++L P P Y N+ Y + G ++ I
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 117 RAVQTRPN 124
+A++ +P+
Sbjct: 84 KALEIKPD 91
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 106 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 165
G P A + Q + A+ N + ++ + AI YY+ AI DP Y+N+
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
G +++ I+ + L ++P H +AL
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 139 GQADMAILYYKQAIGCDPRFLEAY----NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194
G+ D+A Q G P +AY N GN +EAI+ Y + L P+ P
Sbjct: 6 GEPDIA-----QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 247
+N+ Y+ L + L + S A + GN+ DA+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 17/174 (9%)
Query: 9 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 68
A + ++A +LNP V + L L+ QG E+ + + E PT + A +
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAF 128
+ GD + A++ Y A +L+ ++ +G + + + I+ Q +
Sbjct: 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----IGKATILARQSSQD-------- 435
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
T + + + AI +A DPR +A L + ++DEAI+ +
Sbjct: 436 ----PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 97 NLGNVYKALGMPQEAIMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCD 155
N GN + EAI YQ A++ PN + + N+++ Y G + I + +A+
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 156 PRFLEAYNNLGNALKDVGRVDEAI 179
P +A +A + +G +A+
Sbjct: 90 PDHSKALLRRASANESLGNFTDAM 113
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 31 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 90
NL+ AQ L+QE+ + + PT ++ LA + + +++++AV L P
Sbjct: 253 NNLLDAQVLLQES-------INLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 304
Query: 91 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYK 149
+P Y + G +Y L + A +Q+A P N + LA Y++G+ + ++
Sbjct: 305 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 364
Query: 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
+ P E L D G D AI+ Y+ L+ + +G + + +L
Sbjct: 365 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 424
Query: 210 PAAAS 214
+S
Sbjct: 425 ARQSS 429
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
N GN EA Y A+ + P + +SN++ ++ +GDL + +++ +A+++K
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 89 PTFPDAYLNLGNVYKALG 106
P A L + ++LG
Sbjct: 86 PDHSKALLRRASANESLG 103
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 116
+A+ N F + + N A++YY+ A++L P P Y N+ Y + G ++ I
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 117 RAVQTRPN 124
+A++ +P+
Sbjct: 80 KALEIKPD 87
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 106 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 165
G P A + Q + A+ N + ++ + AI YY+ AI DP Y+N+
Sbjct: 2 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 61
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 196
G +++ I+ + L ++P H +AL
Sbjct: 62 SACYISTGDLEKVIEFTTKALEIKPDHSKAL 92
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 139 GQADMAILYYKQAIGCDPRFLEAY----NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 194
G+ D+A Q G P +AY N GN +EAI+ Y + L P+ P
Sbjct: 2 GEPDIA-----QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 56
Query: 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 247
+N+ Y+ L + L + S A + GN+ DA+
Sbjct: 57 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 17/174 (9%)
Query: 9 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 68
A + ++A +LNP V + L L+ QG E+ + + E PT + A +
Sbjct: 325 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 384
Query: 69 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAF 128
+ GD + A++ Y A +L+ ++ +G + + + I+ Q +
Sbjct: 385 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----IGKATILARQSSQD-------- 431
Query: 129 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 182
T + + + AI +A DPR +A L + ++DEAI+ +
Sbjct: 432 ----PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 481
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 97 NLGNVYKALGMPQEAIMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCD 155
N GN + EAI YQ A++ PN + + N+++ Y G + I + +A+
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 156 PRFLEAYNNLGNALKDVGRVDEAI 179
P +A +A + +G +A+
Sbjct: 86 PDHSKALLRRASANESLGNFTDAM 109
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 164 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 223
LG L +GR D A+ + + L P P+AL L ++ ++ A K +A T
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 224 TGLSAPFNNLA----VIYKQ-------QGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 272
+ L+ +Y+Q +G A+S + R++P A + RG Y
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 273 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
+G A +A+ + T E + LA Y G ++ A+ Y +AL
Sbjct: 130 LLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKAL 178
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 72 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
G + AL ++ A+K P P+A L LG+ A+ + V P + +
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78
Query: 132 ASTYY----------ERGQA--DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 179
S Y ERG+ + A+ K A +PR+ + G +G D+A
Sbjct: 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
Q L+L+ + P+ + L +Y+ L A + Y L
Sbjct: 139 ASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKAL 178
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 12/194 (6%)
Query: 40 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
+ EA + ++ + P F AW A F G+ ++A+ Y A +L YL LG
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448
Query: 100 NVYKALG---MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI---- 152
+ LG + E + Q P + L + + AI +++ A+
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDP--LLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 153 ---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
+ + + NLG+A + + D AI NQ L L + T + +Y+ +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566
Query: 210 PAAASYYKATLAVT 223
A ++ +LA++
Sbjct: 567 GLAITHLHESLAIS 580
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 16/228 (7%)
Query: 54 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 113
P A+ W + ++ ++ A +Y+ ++ + P F A++ + + G +AI
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428
Query: 114 CYQRAVQT-RPNAIAFGNLASTYYERGQADMAILYYKQAIGC---DPRFLEAYNNLGNAL 169
Y A + + + + L + + G +A Y + + DP L N LG
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL---NELGVVA 485
Query: 170 KDVGRVDEAIQCYNQCLSL-----QPSHPQALT--NLGNIYMEWNMLPAAASYYKATLAV 222
+ + AI + L L P A T NLG+ Y + M AA L +
Sbjct: 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 223 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRG 268
+T + +A++Y + AI+ +E L I P + A L+ R
Sbjct: 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 231
V ++ EA + +++ ++ P A + + A S Y + G P+
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445
Query: 232 NLAVIYKQQGNYADAISCYNEVLR-------IDPLAADGL----VNRGNTYKEIGRVTDA 280
L + + Q GN I NE L+ DPL + L N+ + I +A
Sbjct: 446 FLGMQHMQLGN----ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501
Query: 281 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ + + A ANL AY+ +AAI + Q LLL +
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
+NP L N GN +G +A Y EA++ P A +SN A + + + AL
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 79 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
+ +E ++L+PTF Y +A+ +A+ YQ+A+
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 298
Q+G+Y A+ Y E ++ +P A NR Y ++ A++D I + PT + +
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87
Query: 299 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
A+A + A+ Y++AL L EA
Sbjct: 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 256 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 315
++P A + N+GN + G A++ Y AI P A+ ++N A+ Y + A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 316 KSYKQALLLRPDF 328
K ++ + L P F
Sbjct: 71 KDCEECIQLEPTF 83
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 53 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 112
+ P A+ N + GD +A+++Y EA+K P Y N Y L Q A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 113 MCYQRAVQTRPNAI 126
+ +Q P I
Sbjct: 71 KDCEECIQLEPTFI 84
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 62/160 (38%)
Query: 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 222 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281
L + Y Q Y A+ +V +P+ + G +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
Query: 282 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 151
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
+P LG AL ++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 212 AASYYKATLAVTTGLS 227
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 76 RALQYYKEAVKLKPTF-PDAY-----LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 129
+A +Y + V L+ + DA+ L+LG Y G +R++ P+ I
Sbjct: 20 KAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVA 79
Query: 130 N-LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
L TY + + D+A+ + +P LG AL ++GR DEAI + L L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 189 QPS 191
+P+
Sbjct: 140 RPN 142
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
Y + G + GR EA+ Q + +LG Y++ + + ++A
Sbjct: 11 YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIA 70
Query: 222 VTTGLSAPFN-----NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
AP N L + Y Q Y A+ +V +P+ + G +GR
Sbjct: 71 -----DAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGR 125
Query: 277 VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
+AI + A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 62/160 (38%)
Query: 162 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 221
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 222 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281
L + Y Q Y A+ +V +P+ + G +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
Query: 282 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 151
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
+P LG AL ++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 212 AASYYKATLAVTTGLS 227
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 68 FMESGDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 126
+ GD+ ALQ +E ++ +P D AY +GN Y+ LG Q+A+ YQ A++ P++
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 127 AF 128
A
Sbjct: 70 AL 71
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 270 TYKEI---GRVTDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
T KE+ G + +A+Q + P EA+ + +AY+ G + A+ +Y+ A+ L
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 326 PDFP 329
PD P
Sbjct: 66 PDSP 69
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 19 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 78
+NP L N GN +G A Y EA++ P AI +SN A + + RAL
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 79 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 124
++L F Y+ A+ +A Y+ A+Q P+
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%)
Query: 222 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 281
+ L+ N Y ++G+Y A+ YNE ++ DP A NR ++ A+
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 282 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 340
D I + + + A+ A ++Y+ AL + P EA + + L+
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 19/241 (7%)
Query: 66 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---- 121
G +E N + V L P+ P ++ +G Y +G E Y T
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKT 123
Query: 122 -RPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAI 179
P IA+G+ + E QA A Q GC L Y L L + ++ E
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAXAAYFTAAQLXKGCHLPXL--YIGLEYGLTNNSKLAE-- 179
Query: 180 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA--------VTTGLSAPF- 230
+ ++Q LS+ P P +G + + A ++ L VT P
Sbjct: 180 RFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
NNL + ++ YA+A+ + + L + P A G + G +A+ + A+ +
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGL 299
Query: 291 R 291
R
Sbjct: 300 R 300
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 13/216 (6%)
Query: 53 IQPTFAIAWSNLAGLFMESGDLN-RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 111
+ P+ ++W + ++ G N A +Y +A L+ T+ A++ G+ + +A
Sbjct: 85 LYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 112 IMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 170
Y A Q + + Y + +A ++ QA+ P + +G
Sbjct: 145 XAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVXHEVGVVAF 204
Query: 171 DVGRVD----------EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 220
G E I+ +++ P L NLG++ + A Y++ L
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP-LLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 221 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 256
+ ++ ++ + I+ GN+ +A+ ++ L +
Sbjct: 264 VLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGL 299
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 10/184 (5%)
Query: 49 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 108
+A ++ T+ AW F + ++A Y A +L L +G Y
Sbjct: 116 KATTLEKTYGPAWIAYGHSFAVESEHDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNS 175
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYK------QAIGCD---PRF 158
+ A + +A+ P + + ++ G+ A ++ +AIG + ++
Sbjct: 176 KLAERFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
NNLG+ + + + EA+ + Q L L P + + +G I+ A Y+
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHT 295
Query: 219 TLAV 222
L +
Sbjct: 296 ALGL 299
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 50 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109
AL + P A ++L L+ S + + A + AV+L+P + LG PQ
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 110 EAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAI 152
EA+ Y RA+ P + N+A +Y Q D+A +AI
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 118 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
A++ PN A +L Y D A ++A+ P + +N LG L + R
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 229
EA+ YN+ L + P + + + N+ Y + AA + + G + P
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
L V+Y NY A + + + P A G T R +A+ Y RA+ I P
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
N+A +Y + + A K +A+ ++
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Query: 7 NEAAQC---CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
NE +C AL +NP H++LG L A + A+ ++P A W+
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
L AL Y A+ + P + N+ Y + A RA+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
A+ + P A+ HA+L Y S + ++A + ++A+ LRPD
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 50 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 109
AL + P A ++L L+ S + + A + AV+L+P + LG PQ
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 110 EAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAI 152
EA+ Y RA+ P + N+A +Y Q D+A +AI
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 118 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 176
A++ PN A +L Y D A ++A+ P + +N LG L + R
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 177 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 229
EA+ YN+ L + P + + + N+ Y + AA + + G + P
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 23/218 (10%)
Query: 127 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 186
A+ +L T E + +AI+ A DP+ + + L + + + A+ L
Sbjct: 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 116
Query: 187 SLQPSHPQALTNLGNIYMEWNM------------LPAAASYYK-------ATLAVTTGLS 227
QP + Q LG++ ++ ++ AA + Y+ A L + +
Sbjct: 117 LSQPQYEQ----LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172
Query: 228 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 287
+L V+Y NY A + + + P A G T R +A+ Y RA
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232
Query: 288 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 325
+ I P N+A +Y + + A K +A+ ++
Sbjct: 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Query: 7 NEAAQC---CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 63
NE +C AL +NP H++LG L A + A+ ++P A W+
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 119
L AL Y A+ + P + N+ Y + A RA+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 287 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
A+ + P A+ HA+L Y S + ++A + ++A+ LRPD
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 45/246 (18%)
Query: 65 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP- 123
A + N+AL+ K+A+++ PT + +G Y+A ++ ++A RP
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRA------QMIQIKKATHNRPK 309
Query: 124 --NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
+ + L S+ AI ++K A+ D F AY +L N + G+ A
Sbjct: 310 GKDKLKVDELISS---------AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDI 360
Query: 182 YNQCLSLQ---PSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVT------TGLSAPF 230
+ + L L+ H + + E++ A +Y L V T L++
Sbjct: 361 FRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL 420
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
L+ C+N L + L+A G V YK G A + Y +A I
Sbjct: 421 KKLST----------KRLCHN-ALDVQSLSALGFV-----YKLEGEKRQAAEYYEKAQKI 464
Query: 291 RPTMAE 296
P AE
Sbjct: 465 DPENAE 470
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLG---------------------NLMKAQGLV 40
RK N+A + ++AL + P H +G + +K L+
Sbjct: 261 RKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLKVDELI 320
Query: 41 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93
A + A+ FA A+++LA ++ E G + A +++A++L+ D
Sbjct: 321 SSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDD 373
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 32/199 (16%)
Query: 156 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS-LQPS----HPQALTNL---GNIYMEWN 207
P L +NL GR + A+ Q L L+ + HP T L +Y + N
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 208 MLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQGNYAD-------AISCYNE 252
AA+ LA+ T G ++A NNLAV+Y ++G Y + A+ +
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 253 VLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--------RPTMAEAHANLAS 303
VL D P A L N + G+ + Y RA+ I P +A+ NLAS
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 304 AYKDSGHVEAAIKSYKQAL 322
Y G + A YK+ L
Sbjct: 204 CYLKQGKFKQAETLYKEIL 222
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 104/274 (37%), Gaps = 52/274 (18%)
Query: 3 KGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------- 53
+GR A C+QAL L H ++ ++ LV + Y +A +
Sbjct: 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99
Query: 54 -------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PDAYLNLGNV 101
P A +NLA L+ + G A K A++++ PD L N+
Sbjct: 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159
Query: 102 Y---KALGMPQEAIMCYQRAV---QTR-----PN-AIAFGNLASTYYERGQADMAILYYK 149
+ G +E YQRA+ QT+ PN A NLAS Y ++G+ A YK
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219
Query: 150 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 209
+ + R E ++ G VD+ N+ + + H + +
Sbjct: 220 EIL---TRAHE---------REFGSVDDE----NKPIWM---HAEEREECKGKQKDGTSF 260
Query: 210 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 243
+YKA + ++ NL +Y++QG +
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 2 RKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 53
++G+ EA C++AL + +P + +NL L + QG +E Y AL I
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
Query: 54 --------QPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
P A +NLA +++ G +A YKE
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 220 LAVTTGLSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI--------DPLAADGLVN 266
L T+G P N LA++Y+ Q Y DA + N+ L I P A L N
Sbjct: 57 LEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116
Query: 267 RGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASAYKDSGHVEAAIKSY 318
Y + G+ +A RA+ IR P +A+ NLA ++ G E Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Query: 319 KQAL-----LLRPDFP 329
++AL L PD P
Sbjct: 177 QRALEIYQTKLGPDDP 192
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 192 HPQALTNL---GNIYMEWNMLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQ 240
HP T L +Y + N AA LA+ T G ++A NNLAV+Y ++
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98
Query: 241 GNYADAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 290
G Y +A L I P A L N + G+ + Y RA+ I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 291 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
P +A+ NLAS Y G + A YK+ L
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 32/203 (15%)
Query: 144 AILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HP---Q 194
A+ ++ +G D P NNL G+ EA + L ++ HP +
Sbjct: 69 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 195 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP--------FNNLAVIYKQQGNYADA 246
L+NL + YY+ L + P NNLA Y +QG Y DA
Sbjct: 129 QLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 247 ISCYNEVLRIDPLAADGLVNRGNT-----YKEIGRVTDAIQD---------YIRAITI-R 291
+ Y E+L G VN N +E D +D + +A +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248
Query: 292 PTMAEAHANLASAYKDSGHVEAA 314
PT+ +L + Y+ G +EAA
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAA 271
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 5 RLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-- 54
+ EAA ALA+ +P + +NL L +G +EA AL I+
Sbjct: 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117
Query: 55 ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGN 100
P A SNLA L G YY+ A+++ P NL +
Sbjct: 118 VLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177
Query: 101 VYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
Y G Q+A Y + + TR + FG++
Sbjct: 178 CYLKQGKYQDAETLY-KEILTRAHEKEFGSV 207
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 90/248 (36%), Gaps = 48/248 (19%)
Query: 13 CRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---------------QPT 56
C+QAL L H ++ ++ LV + Y EA + P
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PDAYLNLGNVY---KALGMP 108
A +NLA L+ + G A K A++++ PD L N+ + G
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143
Query: 109 QEAIMCYQRAVQ---TR-----PN-AIAFGNLASTYYERGQADMAILYYKQ--------- 150
+E Y+RA++ TR PN A NLAS Y ++G+ A YK+
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 151 --AIGCDPR----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
++ D + E + +D E Y C P+ L +LG +Y
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263
Query: 205 EWNMLPAA 212
L AA
Sbjct: 264 RQGKLEAA 271
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 525 APIQVSYMGFPGTTGASYIDY-LVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMD 583
APIQ +G P TT + +I+Y +V D++V +SE L+ +P + +
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVEDDYVGS---EECFSETLLRLP---------KDALP 420
Query: 584 VLDPNCQPKRSDYGLPEDKFI--FACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA 641
+ P++ DY L E+ + + K++P I R +
Sbjct: 421 YVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQ 480
Query: 642 AG-------EMRLRAY----AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 690
+ E +++Y A A P +++R D+ ++ P
Sbjct: 481 SNGITHPYVERFIKSYLGDSATAHPHSP----------YHQYLRILHNCDMMVN-PFPFG 529
Query: 691 HTTG-TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 749
+T G D++ GL + ++ + L GL E +I N++ EY ERAV LA +
Sbjct: 530 NTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENH 589
Query: 750 QK 751
Q+
Sbjct: 590 QE 591
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 192 HPQALTNL---GNIYMEWNMLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQ 240
HP T L +Y + N AA LA+ T G ++A NNLAV+Y ++
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98
Query: 241 GNYADAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 290
G Y +A L I P A L N + G+ + Y RA+ I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 291 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
P +A+ NLAS Y G + A YK+ L
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 32/203 (15%)
Query: 144 AILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HPQALT 197
A+ ++ +G D P NNL G+ EA + L ++ HP
Sbjct: 69 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 198 NLGNIYMEWNMLPAAAS---YYKATLAVTTGLSAP--------FNNLAVIYKQQGNYADA 246
L N+ + A YY+ L + P NNLA Y +QG Y DA
Sbjct: 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 247 ISCYNEVLRIDPLAADGLVNRGNT-----YKEIGRVTDAIQD---------YIRAITI-R 291
+ Y E+L G VN N +E D +D + +A +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248
Query: 292 PTMAEAHANLASAYKDSGHVEAA 314
PT+ +L + Y+ G +EAA
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAA 271
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 90/248 (36%), Gaps = 48/248 (19%)
Query: 13 CRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---------------QPT 56
C+QAL L H ++ ++ LV + Y EA + P
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83
Query: 57 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PDAYLNLGNVY---KALGMP 108
A +NLA L+ + G A K A++++ PD L N+ + G
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 109 QEAIMCYQRAVQ---TR-----PN-AIAFGNLASTYYERGQADMAILYYKQ--------- 150
+E Y+RA++ TR PN A NLAS Y ++G+ A YK+
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 151 --AIGCDPR----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 204
++ D + E + +D E Y C P+ L +LG +Y
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263
Query: 205 EWNMLPAA 212
L AA
Sbjct: 264 RQGKLEAA 271
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 5 RLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-- 54
+ EAA ALA+ +P + +NL L +G +EA AL I+
Sbjct: 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117
Query: 55 ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGN 100
P A +NLA L G YY+ A+++ P NL +
Sbjct: 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177
Query: 101 VYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 131
Y G Q+A Y + + TR + FG++
Sbjct: 178 CYLKQGKYQDAETLY-KEILTRAHEKEFGSV 207
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 20/236 (8%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
I F A G+ L G++DEA + + L PS N
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--------------NEEKE 132
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271
A S + + S N G+Y AI+ +++L + A+ R +
Sbjct: 133 AQSQLIKSDEMQRLRSQALNAFG-----SGDYTAAIAFLDKILEVCVWDAELRELRAECF 187
Query: 272 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ G AI D A ++ EA +++ Y G E ++ ++ L L D
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 25 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84
+ GN + QGL +EA CY + + QP + +SN A ++ G+ +A+Q ++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 85 VKLKPT 90
++ T
Sbjct: 65 LRYTST 70
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 159 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 198
E GN+L G EA+ CY+Q ++ QP +P +N
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSN 43
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 239 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 282
+QG Y +A+ CY++++ P G N+ ++G T AIQ
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 45/246 (18%)
Query: 65 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP- 123
A + N+AL+ K+A+++ PT + G Y+A + ++A RP
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQ------IKKATHNRPK 309
Query: 124 --NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
+ + L S+ AI ++K A D F AY +L N + G+ A
Sbjct: 310 GKDKLKVDELISS---------AIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDI 360
Query: 182 YNQCLSLQ---PSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVT------TGLSAPF 230
+ + L L+ H + + E++ A +Y L V T L++
Sbjct: 361 FRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL 420
Query: 231 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
L+ C+N L + L+A G V YK G A + Y +A I
Sbjct: 421 KKLST----------KRLCHN-ALDVQSLSALGFV-----YKLEGEKRQAAEYYEKAQKI 464
Query: 291 RPTMAE 296
P AE
Sbjct: 465 DPENAE 470
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLG---------------------NLMKAQGLV 40
RK N+A + ++AL + P H G + +K L+
Sbjct: 261 RKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLKVDELI 320
Query: 41 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 93
A + A FA A+++LA + E G + A +++A++L+ D
Sbjct: 321 SSAIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDD 373
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 20/236 (8%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 86
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 211
I F A G+ L G++DEA + + L PS N
Sbjct: 87 IQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--------------NEEKE 132
Query: 212 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 271
A S + S N G+Y AI+ +++L + A+ R +
Sbjct: 133 AQSQLIKSDEXQRLRSQALNAFG-----SGDYTAAIAFLDKILEVCVWDAELRELRAECF 187
Query: 272 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 327
+ G AI D A ++ EA +++ Y G E ++ ++ L L D
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
QA+ G I + W + S K + A + L A F NLA+ Y + Y A+ C ++
Sbjct: 286 QAVIQYGKI-VSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343
Query: 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
L +D GL RG + A D+ + + + P
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
QA+ G I + W + S K + A + L A F NLA+ Y + Y A+ C ++
Sbjct: 286 QAVIQYGKI-VSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343
Query: 254 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292
L +D GL RG + A D+ + + + P
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 62/266 (23%)
Query: 93 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 151
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 63
Query: 152 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ----------------- 194
I F A G+ L G++DEA + + L PS +
Sbjct: 64 IALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRL 123
Query: 195 ---------------ALTNLGNIY------MEWNMLPA-----------AASYYKATLAV 222
A+T L I E L A A S KA +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183
Query: 223 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP------------LAADGLVNRGNT 270
+ + F ++ +Y Q G++ ++S E L++D + L+
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243
Query: 271 YKEIGRVTDAIQDYIRAITIRPTMAE 296
GR TDA Y P++AE
Sbjct: 244 LIRDGRYTDATSKYESVXKTEPSVAE 269
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/352 (18%), Positives = 116/352 (32%), Gaps = 76/352 (21%)
Query: 24 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 83
V+ H LG + A G + +A S + A+ P IA+ A +F+ G AL +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 62
Query: 84 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------------------- 124
+ LK F A L G++ G EA +++ +++ P+
Sbjct: 63 VIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQR 122
Query: 125 ----------------AIAFGN---------------LASTYYERGQADMAILYYKQAIG 153
AI F + A + + G+ AI K A
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 154 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 213
EA+ + +G + ++ +CL L H + + + ++ +A
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242
Query: 214 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT--- 270
+ G Y DA S Y V + +P A+ V
Sbjct: 243 ELIR----------------------DGRYTDATSKYESVXKTEPSVAEYTVRSKERICH 280
Query: 271 -YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 321
+ + + +AI+ + P A + A AY + AI+ Y+ A
Sbjct: 281 CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 26 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA------IAWSNLAGLFMESGDLNRALQ 79
A NLGN G ++A + + L I F IA+SNL ++ G+ A +
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 80 YYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAI 112
YYK+ + L D + +LGN Y L ++AI
Sbjct: 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 109
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 35/140 (25%)
Query: 94 AYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPNAIAFGNLASTYYERGQADMAIL 146
A+ NLGN + LG ++A++ +++ + IA+ NL + Y G+ + A
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 147 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 206
YYK+ + L LKD R EA CY +LGN Y
Sbjct: 71 YYKKTL-----------LLARQLKD--RAVEAQSCY---------------SLGNTYTLL 102
Query: 207 NMLPAAASYYKATLAVTTGL 226
A Y+ LA+ L
Sbjct: 103 QDYEKAIDYHLKHLAIAQEL 122
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 161 AYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAAS 214
A+ NLGN +G +A+ + Q L + + + A +NLGN Y+ A+
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 215 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 274
YYK TL + L + +A SCY + GNTY +
Sbjct: 71 YYKKTLLLARQL-------------KDRAVEAQSCY---------------SLGNTYTLL 102
Query: 275 GRVTDAIQDYIRAITI----RPTMAEAHA--NLASAYKDSGHVEAAI 315
AI +++ + I + + E A +L +AY G+ + A+
Sbjct: 103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 266 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAE------AHANLASAYKDSGHVEAAIKSYK 319
N GNT+ +G DA+ + + + I + A++NL +AY G E A + YK
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 320 QALLL 324
+ LLL
Sbjct: 74 KTLLL 78
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 107 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY------------YKQAIGC 154
+ QE I+ + A+ A YERG +LY + QA+
Sbjct: 19 LQQEVILARXEQI-LASRALTDDERAQLLYERG-----VLYDSLGLRALARNDFSQALAI 72
Query: 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 200
P E +N LG L G D A + ++ L L P++ A N G
Sbjct: 73 RPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 194 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 253
Q L G +Y + A + + LA+ FN L + Q GN+ A ++ V
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSV 103
Query: 254 LRIDPLAADGLVNRG 268
L +DP +NRG
Sbjct: 104 LELDPTYNYAHLNRG 118
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 264 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 323
L RG Y +G A D+ +A+ IRP E L +G+ +AA +++ L
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 324 LRPDFPEATCN 334
L P + A N
Sbjct: 106 LDPTYNYAHLN 116
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 14 RQALALNPLLVDAHSNL----GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 69
Q LA L D + L G L + GL A + + +AL I+P ++ L
Sbjct: 29 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLT 88
Query: 70 ESGDLNRALQYYKEAVKLKPTFPDAYLNLG 99
++G+ + A + + ++L PT+ A+LN G
Sbjct: 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 122 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 181
R +I A YYE + D+A Y I R +A+ LG + D+A++C
Sbjct: 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87
Query: 182 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 216
Y + + L P+ + + + + ++ A Y+
Sbjct: 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
A YYE + D+A Y I R +A+ LG + D+A++CY + + L P
Sbjct: 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYY 216
+ + + + + ++ A Y+
Sbjct: 97 TQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 238 KQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
K+QGN Y +A +CY + +PL A NR Y ++ + A+ D RA+ +
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
+AH L G + ++SY +A+
Sbjct: 73 DGQSVKAHFFL-------GQCQLEMESYDEAI 97
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 42 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
EA +CY A+ P A+ ++N A +++ +AL + A++L A+ LG
Sbjct: 27 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86
Query: 102 YKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 130
+ EAI QRA + + FG+
Sbjct: 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 238 KQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 290
K+QGN Y +A +CY + +PL A NR Y ++ + A+ D RA+ +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 291 RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 322
+AH L G + ++SY +A+
Sbjct: 68 DGQSVKAHFFL-------GQCQLEMESYDEAI 92
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 42 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 101
EA +CY A+ P A+ ++N A +++ +AL + A++L A+ LG
Sbjct: 22 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81
Query: 102 YKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 130
+ EAI QRA + + FG+
Sbjct: 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y Q
Sbjct: 12 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 65
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI Y + ++
Sbjct: 12 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 68
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 229 PFNNLAVIYK--QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
PF A+ + + N + A++ + E++ DP + G Y+ + R DAI Y +
Sbjct: 6 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 65
Query: 287 AITI 290
I +
Sbjct: 66 GIEV 69
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y Q
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 64 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 120
LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI Y + ++
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 229 PFNNLAVIYK--QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 286
PF A+ + + N + A++ + E++ DP + G Y+ + R DAI Y +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 287 AITI 290
I +
Sbjct: 67 GIEV 70
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 8 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-- 65
EA +A+ L P LV+A + LG + +G V A++C+ AL ++ NL+
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL-THCKNKVSLQNLSMV 179
Query: 66 --GLFMESGDLNR-----ALQYYKEAVKLKPTFPDAYLNLGNVYKAL--------GMPQE 110
L +SGD + +++ K AV++ ++ LGN Y +L + Q+
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 111 AIMCYQRAVQTRPNAIAFGNL----ASTY-YERGQADMAILYYKQAIGCDP--------- 156
A+ Y +A + A + +L A+ + YE + A+ + QA DP
Sbjct: 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE-ALEGFSQAAALDPAWPEPQQRE 298
Query: 157 -RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 192
+ LE + L + L+ G+ + + + SL+P+H
Sbjct: 299 QQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAH 334
>pdb|1D2I|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1D2I|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1ES8|A Chain A, Crystal Structure Of Free Bglii
Length = 223
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 217 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 276
K + +T G P +N ++ Y+Q N ++++ YN V + P+ GL+ T +I
Sbjct: 125 KVAIIITKGHXFPASNSSLYYEQAQNQLNSLAEYN-VFDV-PIRLVGLIEDFETDIDIVS 182
Query: 277 VTDAIQDYIRAITIRPTM 294
T A + Y R IT R T+
Sbjct: 183 TTYADKRYSRTITKRDTV 200
>pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7
pdb|1YA0|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Smg7
Length = 497
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 196 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 255
L +LG+I N A SYY+ + P+N LA++ +G++ I Y +
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214
Query: 256 ID---PLAADGL---VNRGNTYKEIGRVTDAIQDYIRAI 288
+ P A+ L +++ ++ + + D+I+A
Sbjct: 215 VKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAF 253
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 29 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 88
+LG++ + + +A S Y A ++ P+ ++ LA L GD + YY ++ +K
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 89 PTFPDAYLNL 98
FP A NL
Sbjct: 217 FPFPAASTNL 226
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 136 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 188
Y+ G +I +++AI DP + + G AL ++ R +EA+ CYN +++
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 44 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 103
Y+ LE L+ P F +SNL+ ++ GDL + ++ +A++LKP + L + +
Sbjct: 29 YNWALE-LKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84
Query: 104 ALGMPQEAIM 113
LG +A+
Sbjct: 85 GLGKFADAMF 94
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCY 182
A+A + + ++ + D AI YY A+ DP F Y+NL VG + + ++
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMS 62
Query: 183 NQCLSLQPSHPQAL 196
+ L L+P + + L
Sbjct: 63 TKALELKPDYSKVL 76
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 263 GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
L ++GN + + DAI+ Y A+ ++ P ++NL++ Y G ++ ++ +
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMSTK 64
Query: 321 ALLLRPDF 328
AL L+PD+
Sbjct: 65 ALELKPDY 72
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
AIA +L + Y++ + A ++Y +AI DP + YNN + + E +Q +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 185 CLSLQPSH-------PQALTNLGNIYMEWNMLPAAASYYKATLA 221
+ + +A++ GN + + N L A ++ +L+
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
+ +G+ A++ Y + ++P A Y E N + ++ +A
Sbjct: 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMK----YQECNKIVKQKAFERA 129
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 237 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
Y + +Y +AI Y++ + ++P A NR Y A+ D RAI + +
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 297 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 331
+ A++ G AA++ Y+ + ++P +A
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 41 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 100
++A + +AL+ P +AW A ++ ++A + +++A+ +KP + N G
Sbjct: 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
Query: 101 VY-KALGMPQEAIMCYQRAVQ--TRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCDP 156
L P E++ + +A+ T P IA N ++GQ +A Y K+++ P
Sbjct: 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 157 RFLEAYNNLGNALKDVGRVDEA 178
+F A+ L G++ +A
Sbjct: 145 QFPPAFKELARTKMLAGQLGDA 166
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 233 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIR 291
LA+ Y + +Y A + + L+ DP + R Y+ + +V D Q+ R A++I+
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIK 72
Query: 292 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 351
P AE + N + A +Y L P +P T + + + +CS +
Sbjct: 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP--TPYIANLNKGICS--AKQGQ 128
Query: 352 FSEVEGIIRRQVNMSVLPSVQP-FHAIAYPIDPMLALEIS------RKYASHCSII 400
F E ++R +++ P P F +A MLA ++ +KY S ++
Sbjct: 129 FGLAEAYLKR--SLAAQPQFPPAFKELART--KMLAGQLGDADYYFKKYQSRVEVL 180
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 237 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 296
Y + ++ +A+ Y E+++ P A G NR ++ +AI D +AI P
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---- 69
Query: 297 AHANLASAYKDSGHVEAAIKSYKQAL 322
N AY + A+K Y AL
Sbjct: 70 ---NFVRAYIRKATAQIAVKEYASAL 92
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 30 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN-RALQYYKEAVKLK 88
+G+LM+ + +A Y ++ RI P W+ L GL G N ++ ++ A+
Sbjct: 136 MGDLMRYKENYPKAQEYYEQSCRINPADGAVWNQL-GLISSLGAKNLESVYFHTRALHAT 194
Query: 89 PTFPDAYLNLGNVYK 103
FP A L N++K
Sbjct: 195 MEFPTASGGLTNIFK 209
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 36 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 95
++G +Q+A +EA++ P A S+ L GD RA + +++KL P +
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIKLFPEYLPGA 68
Query: 96 LNLGNVYKA 104
L ++ KA
Sbjct: 69 SQLRHLVKA 77
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 125 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 184
A+ N A+ + + D A +AI D ++A AL+ +GR+D+A+ +
Sbjct: 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124
Query: 185 CLSLQPSHP---QALTNL 199
C+SL+P + +AL N+
Sbjct: 125 CVSLEPKNKVFQEALRNI 142
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 261 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320
+D L + GN + AI Y +A++I P +N A+AY SG E A + +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 321 ALLLRPDFPEATCNL 335
A ++ P + +A L
Sbjct: 71 ATVVDPKYSKAWSRL 85
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 38/103 (36%)
Query: 166 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 225
GNA +AI Y Q LS+ P++P L+N Y AA + V
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 226 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 268
S ++ L + +Y A Y + + + + RG
Sbjct: 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
A Y E + D+A Y I R +A+ LG + D+A++CY + + L P
Sbjct: 37 FAKLYXEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
Query: 191 SHPQALTNLGNIYMEWNMLPAAASYY 216
+ + + + ++ A Y+
Sbjct: 97 XQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 218
+ +G+ A++ Y + ++P A Y E N + ++ +A
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMK----YQECNKIVKQKAFERA 136
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 131 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 190
L TY E Q D A+ + + A+ DP + A+ LG L+ G A Q + L+
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 191 S 191
S
Sbjct: 85 S 85
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 109 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 167
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 38 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAA 97
Query: 168 ALKDVGRVDEAIQCYNQCLSLQPSHPQA 195
+ +G+ A++ Y + ++P A
Sbjct: 98 SNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 232 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 291
NLA Y + +Y AI ++VL+ID L G G + +A ++ +A ++
Sbjct: 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
Query: 292 P 292
P
Sbjct: 153 P 153
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224
LGN D A++ Y++ L P++ +TN +Y E + + V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 225 GLSAPFNNLAVIYKQQGN-------YADAISCYNEVL 254
+ +A Y + GN Y DAI YN+ L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 165 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224
LGN D A++ Y++ L P++ +TN +Y E + + V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 225 GLSAPFNNLAVIYKQQGN-------YADAISCYNEVL 254
+ +A Y + GN Y DAI YN+ L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,648,411
Number of Sequences: 62578
Number of extensions: 977459
Number of successful extensions: 2945
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2357
Number of HSP's gapped (non-prelim): 440
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)