Query 003557
Match_columns 811
No_of_seqs 1444 out of 4151
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 18:26:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003557.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1605-1609//hhsearch_pdb/003557hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 932.0 68.1 610 188-802 4-722 (723)
2 3q3e_A HMW1C-like glycosyltran 1.0 1 1 585.6 31.1 353 420-792 270-630 (631)
3 2vsy_A XCC0866; transferase, g 1.0 1 1 534.6 64.6 559 172-792 2-566 (568)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 316.3 46.1 357 2-358 11-368 (388)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 306.6 44.0 342 2-343 45-387 (388)
6 2xpi_A Anaphase-promoting comp 1.0 1 1 289.7 38.9 357 2-361 96-507 (597)
7 2gw1_A Mitochondrial precursor 1.0 1 1 285.9 38.7 355 2-358 18-478 (514)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 283.0 38.4 355 3-358 130-579 (597)
9 3fp2_A TPR repeat-containing p 1.0 1 1 280.5 35.8 357 2-360 37-493 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 274.6 44.0 334 5-338 7-372 (450)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=932.02 Aligned_cols=610 Identities=47% Similarity=0.804 Sum_probs=552.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 09998689987999999729947999999999820689906787799999983999999999999980299999999999
Q 003557 188 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 267 (811)
Q Consensus 188 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 267 (811)
..|++++++.++|.++..+|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99871999999999999869999999999999986899899999999999986999999999999998099989999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999909989999999999821999399999999999967998999999999996099996899879987421277456
Q 003557 268 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWED 347 (811)
Q Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (811)
|.++..+|++++|++.|+++++++|++..++.++|.+|...|++++|++.|+++++++|++..++.+++.++..+|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999849999999999999980999899999999999986999999999999997399985777405567774014999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 75789999999999740169998886543458899999999999999763556310599999999998766679975412
Q 003557 348 RDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLR 427 (811)
Q Consensus 348 a~~~~~~a~~l~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 427 (811)
|...++++.++..+.+.....+...++..+.+..++......+++++..+.........++..++. +.+.+.+++|
T Consensus 164 A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~klr 239 (723)
T 4gyw_A 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPK----DLKLSDGRLR 239 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCC----SSTTTTTCEE
T ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCE
T ss_conf 999999999967657864347421202454330488899999999998532111013476445753----2346655431
Q ss_pred EEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHHHHCCCEEEE
Q ss_conf 7553288799736765899850258987699998637999907999997405935878999-999999998718972999
Q 003557 428 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-SSDMIAKLINEDKIQILI 506 (811)
Q Consensus 428 ig~~s~~~~~h~~~~~~~~l~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dil~ 506 (811)
|||+|+||++|++++++.+++++||+++|||++|+.++.+.+.++.+++..+++|+++.++ ++.+++++|++|+|||||
T Consensus 240 IGyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIli 319 (723)
T 4gyw_A 240 VGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILV 319 (723)
T ss_dssp EEEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 45641422147178899999997245744699997689886089999998641340201278479999998742650677
Q ss_pred ECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC---
Q ss_conf 37877778501121018984488123368877899643897257548967778873125776985334799655556---
Q 003557 507 NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMD--- 583 (811)
Q Consensus 507 ~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~dy~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~--- 583 (811)
||+|||.++|+.+|++|||||||+|||||+|||+++|||+|+|.+++|++.+.+|+|++++||++++++.+....+.
T Consensus 320 dl~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~ 399 (723)
T 4gyw_A 320 NMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 399 (723)
T ss_dssp ESCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSS
T ss_pred ECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 22577788763256508887235521478777887677798688878800343060001327875403785112544333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 003557 584 -------------------------------------------------------------------------------- 583 (811)
Q Consensus 584 -------------------------------------------------------------------------------- 583 (811)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 479 (723)
T 4gyw_A 400 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQI 479 (723)
T ss_dssp CEEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54322233443234421235543210002332100112134444443322211124555543211101100012343332
Q ss_pred -------------------------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf -------------------------7899999886779999994799853987888988999999998336990799622
Q 003557 584 -------------------------VLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR 638 (811)
Q Consensus 584 -------------------------~~~~~~~~~r~~~gl~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~ 638 (811)
.+.+.....|..+|||++.|||||||+++|++|.++++|++||+++|+|+|||..
T Consensus 480 ~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~ 559 (723)
T 4gyw_A 480 TINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR 559 (723)
T ss_dssp EETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 33443223432211112100012235543332216541999797799968840138999999999999858997399980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 88335999999999829999956882798908899860777187169899980679998772898442368865110158
Q 003557 639 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 718 (811)
Q Consensus 639 ~~~~~~~~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~ 718 (811)
++...+..+++.+++.||+.+||+|.+..+..+|++.|+.+||||||||||||||++|||||||||||+.|++++||+|+
T Consensus 560 ~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~ 639 (723)
T 4gyw_A 560 FPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639 (723)
T ss_dssp TTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHH
T ss_conf 76777999999999659995748878999999999986798398479795978999999972999797658973176999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99885599986443799899999999840999999999999941203999996889999999999999997559999762
Q 003557 719 SLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHF 798 (811)
Q Consensus 719 ~~l~~~g~~~~~v~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~ 798 (811)
|+|.++|++| ||+.|.++|+++|++|++|++.+.++|+++|+++.++++||.++|++++|++|++||++||+|++|+|+
T Consensus 640 s~l~~~gl~e-~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 640 SQLTCLGCLE-LIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HHHHHCCCCC-CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999769951-235999999999999966999999999999998874868688999999999999999999769999760
Q ss_pred EECC
Q ss_conf 0138
Q 003557 799 KVTE 802 (811)
Q Consensus 799 ~~~~ 802 (811)
.||.
T Consensus 719 ~~~~ 722 (723)
T 4gyw_A 719 IKPV 722 (723)
T ss_dssp CC--
T ss_pred CCCC
T ss_conf 0668
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=1.00 E-value=1 Score=585.56 Aligned_cols=353 Identities=16% Similarity=0.147 Sum_probs=318.3
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCC----HHHHHH
Q ss_conf 7997541275532887997367658998502589876999986379999079999974059358789999----999999
Q 003557 420 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----SDMIAK 495 (811)
Q Consensus 420 ~~~~~~~rig~~s~~~~~h~~~~~~~~l~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 495 (811)
..+++++++||+|.++++|++++++.+++.+ ||++|||++|+ ++..| .++ +..+++|+++..++ ++++++
T Consensus 270 ~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~D-~~t---r~~~d~f~~l~~~s~~~~~~~ia~ 343 (631)
T 3q3e_A 270 YRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSVD-QAG---QEVFDEFHLVAGDNMKQKLEFIRS 343 (631)
T ss_dssp EETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTSC-HHH---HTTSSEEEECCCSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHH-HHHCEEEEEEE-CCCCC-HHH---HHCCCEEEECCCCCCCCCHHHHHH
T ss_conf 7789717999958655888189999999996-35368999996-89878-878---860867999978875456999999
Q ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 98718972999378777785011210189844881233688778996438972575489677788731257769853347
Q 003557 496 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVN 575 (811)
Q Consensus 496 ~i~~~~~dil~~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~dy~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~ 575 (811)
+|++|+|||||||+|||.+.+..++++|||||||+|+|||+|||+++|||+|+|.+..| .+.+|+|++++||++++++
T Consensus 344 ~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~ 421 (631)
T 3q3e_A 344 VCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPY 421 (631)
T ss_dssp HHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCC
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHCCCCHHEEECCCCCCCCCCCCCCEEEECCCCCC--CCCCCEEEEEECCCCCCCC
T ss_conf 99865998999799998700478876899063375058875457666778996897778--3237600279789986334
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE--ECCCHHHHHHHHHHH
Q ss_conf 99655556789999988677999999--47998539878889889999999983369907996--228833599999999
Q 003557 576 DYKQKNMDVLDPNCQPKRSDYGLPED--KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL--LRFPAAGEMRLRAYA 651 (811)
Q Consensus 576 ~~~~~~~~~~~~~~~~~r~~~gl~~~--~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~--~~~~~~~~~~l~~~~ 651 (811)
.++. ..+.|..+|+|++ +++|||||++.|++|.++++|++|++++|+++||+ .|.++.....+.+.+
T Consensus 422 ~p~~---------~~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~ 492 (631)
T 3q3e_A 422 VPSA---------LAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERF 492 (631)
T ss_dssp CCCT---------TCCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHH
T ss_pred CCCC---------CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 7843---------4776433457767884899989865668999999999999868985899872378711558999999
Q ss_pred HHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 98299999568827989088998607771871698999806799987728984423688651101589988559998644
Q 003557 652 VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI 731 (811)
Q Consensus 652 ~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g~~~~~v 731 (811)
.+.||+ +||+|.|..+..+|++.|+.+|||||||||+||+|++|||||||||||+.|+++++|+|+|+|.++|++|++|
T Consensus 493 ~~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LI 571 (631)
T 3q3e_A 493 IKSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLI 571 (631)
T ss_dssp HHHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGE
T ss_pred HHCCCC-CCEEECCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 982999-5489868899899999984285999698556971899999769988952688578886789887469976452
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3799899999999840999999999999941203999996889999999999999997559
Q 003557 732 VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 792 (811)
Q Consensus 732 ~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 792 (811)
++|+++|+++|++|++|+++|+++|+++++++..+++|+ ++++++|+.|+++|++|...
T Consensus 572 A~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~~~ 630 (631)
T 3q3e_A 572 ANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFLKE 630 (631)
T ss_dssp ESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHC
T ss_conf 399999999999996799999999999998765377712--32999999999999998742
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=1.00 E-value=1 Score=534.61 Aligned_cols=559 Identities=27% Similarity=0.404 Sum_probs=472.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 69989999999999960999868998799999972994799999999982068990678779999998399999999999
Q 003557 172 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 251 (811)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (811)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 86599999999999975999889999999999986999999999999997399989999999999998799999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 998029999999999999999909989999999999821999399999999999967---99899999999999609999
Q 003557 252 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS---GHVEAAIKSYKQALLLRPDF 328 (811)
Q Consensus 252 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 328 (811)
++++.+|++..++..+|.++...|++++|++.++++++.+|++..++..++.++... |++++|.+.++++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99743999999999999999875889999999999998589988999999999997325121899999999998468766
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 68998799874212774567578999999999974016999888654345889999999999999976355631059999
Q 003557 329 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 408 (811)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (811)
...+..++ ..++......+..|....-. . . ..+
T Consensus 162 ~~~~~~l~-------------------------------------------~~~~~~~~~~~~~~~~~~~~--~-~-~~~ 194 (568)
T 2vsy_A 162 VEPFAFLS-------------------------------------------EDASAAEQLACARTRAQAIA--A-S-VRP 194 (568)
T ss_dssp SCHHHHTT-------------------------------------------SCCCHHHHHHHHHHHHHHHH--T-T-CCC
T ss_pred CCHHHHHC-------------------------------------------CCCHHHHHHHHHHHHHHCCC--C-C-CCC
T ss_conf 68177727-------------------------------------------99989999999999973147--6-5-677
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf 999999876667997541275532887997367658998502--589876999986379999079999974059358789
Q 003557 409 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGM--HNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS 486 (811)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~l~~~--~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (811)
+ +.....+.+++|||++++++..|++++++.++++. +++.+|+|++|+..+...+.+..+++..+ .|+.+.
T Consensus 195 ~------~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 267 (568)
T 2vsy_A 195 L------APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT 267 (568)
T ss_dssp C------CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT
T ss_pred C------CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-EEEECC
T ss_conf 8------888778999808999886410070899999998605688012899999799987659999987447-699788
Q ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 99999999998718972999378777785011210189844881233688778996438972575489677788731257
Q 003557 487 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLV 566 (811)
Q Consensus 487 ~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~dy~~~d~~~~~~~~~~~~~e~~~ 566 (811)
.++...+.+.|+++++||+|++++|+.+++..+++.+++|+|++|+||+.+++++.++|+++|.++++++....|.+++.
T Consensus 268 ~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~ 347 (568)
T 2vsy_A 268 ALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVL 347 (568)
T ss_dssp TCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 99999999999868997999898877766677874699751576536774658877529987987688655568811067
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCHHHHH
Q ss_conf 769853347996555567899999886779999994799853987888988999999998336990799622-8833599
Q 003557 567 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEM 645 (811)
Q Consensus 567 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~ 645 (811)
.+|+++..... .......+.|.++|++++.+++++.....|+++.++++|.+++++.|+.+|+|+| +|+. ..
T Consensus 348 ~ipn~~~~~~~------~~~~~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~-~~ 420 (568)
T 2vsy_A 348 RLQGAFQPSDT------SRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA-DA 420 (568)
T ss_dssp ECSSCSCCCCT------TCCCCCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH-HH
T ss_pred CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH-HH
T ss_conf 17876779977------778888987322489999779996884146998999999999986899679995398899-99
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999998299999568827989088998607771871698999806799987728984423688651101589988559
Q 003557 646 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG 725 (811)
Q Consensus 646 ~l~~~~~~~gi~~~rv~f~~~~~~~~~~~~~~~~Di~l~~~~~~~~~t~~eal~~G~Pvvt~~g~~~~~~~~~~~l~~~g 725 (811)
.+++.+.++|++.++|+|+|.++.++...+|..+||||+|+++++|++++|||+||+|||+++|..+.+++|++++..+|
T Consensus 421 ~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g 500 (568)
T 2vsy_A 421 RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG 500 (568)
T ss_dssp HHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999997699866778607899799999984387883288989718899999679998965588700779999999779
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9986443799899999999840999999999999941203999996889999999999999997559
Q 003557 726 LGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 792 (811)
Q Consensus 726 ~~~~~v~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 792 (811)
+++ +|.+|++++++.+.+|+.|++.+..+++..++.+.....|+++.++++++++|+++|++||..
T Consensus 501 ~~e-~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 501 LDE-MNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp CGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHH-HHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 905-300999999999999956999999999999986550888899999999999999999999862
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=316.27 Aligned_cols=357 Identities=28% Similarity=0.424 Sum_probs=348.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..++++++.+|++..++..++.++...|++++|...+++++..+|.+..++..+|.++...|++++|+..|
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 77999999999999998497889999999999998689999999999997619786699999999998779999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9998409999799999999999849958999999999950998-668876999999929989999999999970999599
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
+++++.+|++..++..+|.++...|++++|+..++++++.+|+ ...+..++.++...|++++|+..++++++.+|++..
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99987496539999999999998589999999999999759896899999999999846899999999999872989789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999998699899999999999609998689987999999729947999999999820689906787799999983
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+...+..++.++...
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998599999999999998559886799999999999857899999999999852968789999999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999998029999999999999999909989999999999821999399999999999967998999999999
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|+..+++
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88999999999998649998899999999999869979999999999864944499999999999984899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99609999689987998742127745675789999999
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
+++..|++..++.+++..+...|++++|...++++.++
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98609873999977999999868889999999999861
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=306.63 Aligned_cols=342 Identities=37% Similarity=0.605 Sum_probs=278.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|...++++++.+|.+..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|
T Consensus 45 ~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86899999999999976197866999999999987799999999999998749653999999999999858999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9998409999799999999999849958999999999950998-668876999999929989999999999970999599
Q 003557 82 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 160 (811)
Q Consensus 82 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 160 (811)
+++++.+|+...++..+|.++...|++++|+..|+++++..|+ ...+..++.++...|++++|+..++++++.+|++..
T Consensus 125 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 99997598968999999999998468999999999998729897899999999999859999999999999855988679
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999998699899999999999609998689987999999729947999999999820689906787799999983
Q 003557 161 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 240 (811)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 240 (811)
++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|+..++++++..|.+...+..++.++...
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998578999999999998529687899999999999868899999999999864999889999999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999998029999999999999999909989999999999821999399999999999967998999999999
Q 003557 241 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 320 (811)
Q Consensus 241 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 320 (811)
|++++|+..++++++..|.+...+..++.++...|++++|+..++++++..|++..++..++.++...|++++|+..|++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99799999999998649444999999999999848999999999999860987399997799999986888999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99609999689987998742127
Q 003557 321 ALLLRPDFPEATCNLLHTLQCVC 343 (811)
Q Consensus 321 al~~~p~~~~~~~~l~~~~~~~~ 343 (811)
+++++|++..++++++.++..++
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 98619997899985999998745
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=289.71 Aligned_cols=357 Identities=13% Similarity=0.049 Sum_probs=294.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..|++++...|+ ...+..++.++...|++++|+..|++++.. +.+..++..++.+|...|++++|+..|
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 745834799999999960899-357999999999747699999999987335-456508999999999886699999998
Q ss_pred HHHHHCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHH------------
Q ss_conf 9998409----------------999799999999999849958999999999950998-66887699------------
Q 003557 82 KEAVKLK----------------PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA------------ 132 (811)
Q Consensus 82 ~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la------------ 132 (811)
++..... +.+..++..++.+|...|++++|+..|+++++.+|+ ...+..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 42488632232343343211235125899999889999839989999999999972932569999999850346156789
Q ss_pred --------------------------HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf --------------------------999992998999999999997099959999999999998699899999999999
Q 003557 133 --------------------------STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 186 (811)
Q Consensus 133 --------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (811)
..|...|++++|...++++++. |.+...+..++..+...|++++|+..|++++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 998657742344308899999999999980731399999999876438-8309999999999998468999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 60999868998799999972994799999999982068990678779999998399999999999998029999999999
Q 003557 187 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 266 (811)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 266 (811)
+..|++..++..++.++...|++++|...+++++...|.+...+..++.+|.+.|++++|+..|+++++..|.+...+..
T Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 412 (597)
T 2xpi_A 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412 (597)
T ss_dssp HHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 72955379999999999982777799999999985183547999999999998356999999999998729777899999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999990998999999999982199939999999999996799899999999999609999689987998742127745
Q 003557 267 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 346 (811)
Q Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 346 (811)
++.++...|++++|++.|+++++..|++..++..++.+|...|++++|++.|+++++..|++..++..++..+...|+++
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 99999975777999999999998681343899999999998579999999999999848887679999999999818999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 675789999999999
Q 003557 347 DRDRMFSEVEGIIRR 361 (811)
Q Consensus 347 ~a~~~~~~a~~l~~~ 361 (811)
+|...++++.++..+
T Consensus 493 ~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 493 TAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999985323
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=285.90 Aligned_cols=355 Identities=16% Similarity=0.129 Sum_probs=335.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..|+++++.+| +..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|
T Consensus 18 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86027899999999985592-27899868899998854999999998776069378999998889999876688899999
Q ss_pred HHHHHCCCCC----------------------------------------------------------------------
Q ss_conf 9998409999----------------------------------------------------------------------
Q 003557 82 KEAVKLKPTF---------------------------------------------------------------------- 91 (811)
Q Consensus 82 ~~al~~~p~~---------------------------------------------------------------------- 91 (811)
++++...|.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 99995598751137899999999999999999999899998766512677246788634478615899999862587888
Q ss_pred ---------HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf ---------7999999999998---4995899999999995-----0--9-------98-66887699999992998999
Q 003557 92 ---------PDAYLNLGNVYKA---LGMPQEAIMCYQRAVQ-----T--R-------PN-AIAFGNLASTYYERGQADMA 144 (811)
Q Consensus 92 ---------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~-~~~~~~la~~~~~~g~~~~A 144 (811)
...+..++..+.. .|++++|+..++++++ . . |. ...+..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 88725995888999989999876233229999999999998866542238100114827899999999999987899999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999709995999999999999869989999999999960999868998799999972994799999999982068
Q 003557 145 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 224 (811)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 224 (811)
+..++++++..|. ..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|...+++++...|
T Consensus 257 ~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 257 HEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCH
T ss_conf 9999999863864-899999999999888899999999998613867789999999999980779999999999987385
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH------HH
Q ss_conf 990678779999998399999999999998029999999999999999909989999999999821999399------99
Q 003557 225 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE------AH 298 (811)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~ 298 (811)
.+...+..++.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|++.. ++
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 02899999999999868999999999999987546778999999999878899999999999997612332178999999
Q ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999996---799899999999999609999689987998742127745675789999999
Q 003557 299 ANLASAYKD---SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 299 ~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
..+|.++.. .|++++|+..++++++..|++..++..++.++...|++++|...++++.++
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999866332588899999999998758555899999999999825799999999999876
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=282.99 Aligned_cols=355 Identities=15% Similarity=0.091 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHH
Q ss_conf 9978999999999995099998999999999999199999999999999729----------------993999999999
Q 003557 3 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----------------PTFAIAWSNLAG 66 (811)
Q Consensus 3 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~ 66 (811)
.|++++|+..+++++.. +.+..++..++.+|...|++++|+..|++..... +.+..+|..++.
T Consensus 130 ~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp TTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 47699999999987335-45650899999999988669999999842488632232343343211235125899999889
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCC---------------------------------------------------------
Q ss_conf 99982998999999999984099---------------------------------------------------------
Q 003557 67 LFMESGDLNRALQYYKEAVKLKP--------------------------------------------------------- 89 (811)
Q Consensus 67 ~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------------------- 89 (811)
+|...|++++|+..|+++++.+|
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99983998999999999997293256999999985034615678999865774234430889999999999998073139
Q ss_pred --------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf --------------99799999999999849958999999999950998-668876999999929989999999999970
Q 003557 90 --------------TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 154 (811)
Q Consensus 90 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 154 (811)
.+...+..++..+...|++++|+..|+++++..|+ ...+..++.++...|++++|...++++++.
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999998764388309999999999998468999999999999729553799999999999827777999999999851
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99959999999999998699899999999999609998689987999999729947999999999820689906787799
Q 003557 155 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 234 (811)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 234 (811)
.|++...+..++.+|...|++++|.+.|+++++..|.+...+..++.++...|++++|+..++++++..|.+...+..++
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 83547999999999998356999999999998729777899999999999757779999999999986813438999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHHHHHH
Q ss_conf 99998399999999999998029999999999999999909989999999999821------9993-9999999999996
Q 003557 235 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTM-AEAHANLASAYKD 307 (811)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~ 307 (811)
.++...|++++|+..++++++..|.+...+..++.++...|++++|++.|+++++. +|+. ..++..++.++..
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99998579999999999999848887679999999999818999999999999985323454535499999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 799899999999999609999689987998742127745675789999999
Q 003557 308 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 358 (811)
Q Consensus 308 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l 358 (811)
.|++++|++.++++++.+|++..++..++..+...|++++|...++++.++
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 047999999999999738997389999999999817899999999999720
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=280.49 Aligned_cols=357 Identities=18% Similarity=0.195 Sum_probs=324.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89978999999999995099998999999999999199999999999999729993999999999999829989999999
Q 003557 2 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 81 (811)
Q Consensus 2 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 81 (811)
+.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..|
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86429999999999986389984899999999998689999999999998609862899999999999838999999999
Q ss_pred HHHHHCCCCCHHH-------------------------------------------------------------------
Q ss_conf 9998409999799-------------------------------------------------------------------
Q 003557 82 KEAVKLKPTFPDA------------------------------------------------------------------- 94 (811)
Q Consensus 82 ~~al~~~p~~~~~------------------------------------------------------------------- 94 (811)
+ ++...|+....
T Consensus 117 ~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 117 S-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp H-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred H-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 9-986487878588999998778988999999999747454543450675799999744749999987632564617899
Q ss_pred -HHHHH--------HHHHHCCCHHHHHHHHHHHHHHCCC-H-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf -99999--------9999849958999999999950998-6-------68876999999929989999999999970999
Q 003557 95 -YLNLG--------NVYKALGMPQEAIMCYQRAVQTRPN-A-------IAFGNLASTYYERGQADMAILYYKQAIGCDPR 157 (811)
Q Consensus 95 -~~~la--------~~~~~~g~~~~A~~~~~~al~~~p~-~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 157 (811)
...++ ......+++++|+..++++++..|+ . ..+..++.++...|++++|+..++++++.+|+
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999878876402068888799999999999998787740445999999999999987545578999999999866987
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 59999999999998699899999999999609998689987999999729947999999999820689906787799999
Q 003557 158 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 237 (811)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 237 (811)
..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.++
T Consensus 276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 -PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354 (537)
T ss_dssp -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf -4699999999998037999999999975459998799999999998668999999999999985999779999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHC---
Q ss_conf 9839999999999999802999999999999999990998999999999982199939------9999999999967---
Q 003557 238 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA------EAHANLASAYKDS--- 308 (811)
Q Consensus 238 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~--- 308 (811)
...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|++. ..+..++.++...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98477999999999998739998599999999998837889999999999870976244688899999889999997640
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf -------9989999999999960999968998799874212774567578999999999
Q 003557 309 -------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 360 (811)
Q Consensus 309 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~l~~ 360 (811)
|++++|+..++++++.+|++..++.+++.++...|++++|...++++.++..
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 10022475799999999999974999789999999999985149999999999998689
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=274.59 Aligned_cols=334 Identities=19% Similarity=0.224 Sum_probs=316.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 78999999999995099998999999999999199999999999999729993999999999999829989999999999
Q 003557 5 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 84 (811)
Q Consensus 5 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 84 (811)
....+...+.+++..+|.++..+..+|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 55444656423566537899999999999998799999999999999849716899999999999879979999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-H---HHHHHH------------HHHHHHCCCHHHHHHHH
Q ss_conf 8409999799999999999849958999999999950998-6---688769------------99999929989999999
Q 003557 85 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-A---IAFGNL------------ASTYYERGQADMAILYY 148 (811)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~l------------a~~~~~~g~~~~A~~~~ 148 (811)
++.+|++..++..+|.++...|++++|+..|+++++..|+ . ..+..+ +..+...|++++|+..+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 84498748999999999998699999999999997249997016889999999999999999999999868999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99997099959999999999998699899999999999609998689987999999729947999999999820689906
Q 003557 149 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 228 (811)
Q Consensus 149 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 228 (811)
+++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...|.+..
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99998688976999999999987799999999999999868898799999999999759999999999999875998089
Q ss_pred HHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 78779------------9999983999999999999980299999----9999999999990998999999999982199
Q 003557 229 PFNNL------------AVIYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 292 (811)
Q Consensus 229 ~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 292 (811)
.+..+ +..+...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999987179999999999998508733689999999999999987889999999999988484
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9399999999999967998999999999996099996899879987
Q 003557 293 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 338 (811)
Q Consensus 293 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 338 (811)
++..++..+|.++...|++++|+..++++++++|++..++..++.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 5489999999999870379999999999988593529999999999
Done!