BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003558
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 145/174 (83%), Gaps = 3/174 (1%)
Query: 147 KSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFA 206
KS+AA ALKGL+F++ G GWA VEKRF+++ +GVL R+RFG+CIGM+ S +FA
Sbjct: 5 KSSAAVALKGLQFVTAKVGNDGWAAVEKRFNQL--QVDGVLLRSRFGKCIGMDG-SDEFA 61
Query: 207 VELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVR 266
V++FD+L R+R I +TKD+L++F++Q++DQ FD+RL+TFFDMVDK+ADGR+T +EV+
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
Query: 267 EIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320
EII+LSASANKLS I+++A+EY ALIMEELDP +LG I +++LE LLLQ+P+++
Sbjct: 122 EIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEA 175
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 706 VLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 744
+ +DGP+G ++D YEVV+LVG GIG TP SI+K +
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSV 39
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 153 ALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDA 212
A++ L F K + ++K EI G + F + KD E+ A
Sbjct: 31 AMRALGFEPKKE------EIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKA 84
Query: 213 LTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269
+ + I+ L+ ++ + D LQ D D+D DG ++E E I+
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 242 DSRLQTFFDMVDKDADGRITEDEVREIIS-LSASANKLSNIQKQAEEYAALIMEELDPDH 300
D++++ F+++DKD G I E+E++ ++ SA L++ + +A ++ D DH
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKA------LLAAGDSDH 93
Query: 301 LGCIMIDNLEMLLLQA 316
G I D ++ QA
Sbjct: 94 DGKIGADEFAKMVAQA 109
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 26/117 (22%)
Query: 172 VEKRFDEITASTNGVLPRARF-------GECIGMNKDSKDFAVE--------LFDALTRR 216
++KRFD NG L RA F E G KD+ V+ LFD L +
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFG--KDAGAAEVQTLKNAFGGLFDYLAKE 66
Query: 217 RNIQGD-TITKDQLREFWDQI----SDQSFDSRL----QTFFDMVDKDADGRITEDE 264
+ D ++T++Q + + + SF+ L + M DK+ADG+I DE
Sbjct: 67 AGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADE 123
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 153 ALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDA 212
A++ L F K + ++K +I +G + F + + +D E+ A
Sbjct: 33 AMRALGFEPKKE------EIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKA 86
Query: 213 LTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269
+ + I+ L+ ++ + D LQ D D+D DG + E+E I+
Sbjct: 87 FRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 143
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 227 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAE 286
DQ E +S++ + + FDM D D G I+ E+ ++ + Q +
Sbjct: 2 DQQAEARSYLSEEMI-AEFKAAFDMFDADGGGDISVKELGTVMRMLG--------QTPTK 52
Query: 287 EYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESRNLSHML 333
E I+EE+D D G I + +++++ + KG L+ +
Sbjct: 53 EELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELF 99
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 17 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 68
Query: 303 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 331
I + +++++ + KG L++
Sbjct: 69 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 97
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 303 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 331
I + +++++ + KG L++
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 100
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 303 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 331
I + +++++ + KG L++
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 100
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 303 CIMIDNLEMLLLQAPAQSVKGGESRNLS 330
I + +++++ + KG L+
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELA 99
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 227 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAE 286
DQ E +S++ + + FDM D D G I+ E+ ++ + Q +
Sbjct: 2 DQQAEARSYLSEEMI-AEFKAAFDMFDADGGGDISVKELGTVMRMLG--------QTPTK 52
Query: 287 EYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESRNLS 330
E I+EE+D D G I + +++++ + KG L+
Sbjct: 53 EELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELA 96
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 39/100 (39%)
Query: 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQL 229
A ++ +E+ A NG + F + D EL +A Q I+ +L
Sbjct: 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAEL 106
Query: 230 REFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269
R + ++ D + D D DG+I DE +++
Sbjct: 107 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 146
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 245 LQTFFDMVDKDADGRITEDEVREII-SLSASANKLSNIQKQAEEYAALIMEELDPDHLGC 303
++ F +D DA G I E+E++ ++ S +A L++ + +A ++ D D G
Sbjct: 44 VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKA------FLKAADKDGDGK 97
Query: 304 IMIDNLEMLLLQA 316
I ID E L+ +A
Sbjct: 98 IGIDEFETLVHEA 110
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 223 TITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 282
TIT D+L++ ++ + +S ++ D D D G I + E I+ + NKL
Sbjct: 26 TITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI---DYGEFIAATVHLNKL---- 78
Query: 283 KQAEEYAALIMEELDPDHLGCIMIDNLE 310
+ EE D D G I +D ++
Sbjct: 79 -EREENLVSAFSYFDKDGSGYITLDEIQ 105
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 303 CIMIDNLEMLLLQAPAQSVKGGESRNL 329
I + +++++ + KG L
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEEL 98
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 203 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 262
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 17 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 76
Query: 263 DEVREII 269
E I+
Sbjct: 77 QEFLRIM 83
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 191 RFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---FDSRLQT 247
+F + G++K S ++F + N Q + D+L+ F + + +S ++
Sbjct: 28 KFFQTSGLSKMSASQVKDIFRFID---NDQSGYLDGDELKYFLQKFQSDARELTESETKS 84
Query: 248 FFDMVDKDADGRITEDEVREII 269
D D D DG+I DE +E++
Sbjct: 85 LMDAADNDGDGKIGADEFQEMV 106
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 203 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 262
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 7 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 66
Query: 263 DEVREII 269
E I+
Sbjct: 67 QEFLRIM 73
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 191 RFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---FDSRLQT 247
+F + GM+K S E+F L N Q I +D+L+ F + + S +T
Sbjct: 28 KFFQISGMSKKSSSQLKEIFRILD---NDQSGFIEEDELKYFLQRFESGARVLTASETKT 84
Query: 248 FFDMVDKDADGRITEDEVREII 269
F D D DG+I +E +E++
Sbjct: 85 FLAAADHDGDGKIGAEEFQEMV 106
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 153 ALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDA 212
A++ L F K + ++K EI +G + F + +D E+ A
Sbjct: 53 AMRALGFEPKKE------EIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKA 106
Query: 213 LTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269
+ TIT LR ++ + + LQ D++ D I EDE I+
Sbjct: 107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 170 ANVEKRFDEITASTNGVLPRARFGECIGMN---KDSKDFAVELFDALTRRRNIQGDTITK 226
A ++ +E+ A NG + F + +DS++ +E F R N I+
Sbjct: 46 AELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGN---GLISA 102
Query: 227 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDE-VREIIS 270
+LR + ++ D + D D DG I +E VR ++S
Sbjct: 103 AELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 170 ANVEKRFDEITASTNGVLPRARFGECIGMN---KDSKDFAVELFDALTRRRNIQGDTITK 226
A ++ +E+ A NG + F + +DS++ +E F R N I+
Sbjct: 46 AELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGN---GLISA 102
Query: 227 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDE-VREIIS 270
+LR + ++ D + D D DG I +E VR ++S
Sbjct: 103 AELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 39/100 (39%)
Query: 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQL 229
A ++ +E+ A NG + F + D EL +A Q I+ +L
Sbjct: 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAEL 106
Query: 230 REFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269
R + ++ D + D D DG+I +E +++
Sbjct: 107 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 211 DALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQ--TFFDMVDKDADGRITEDEVREI 268
+AL + + G + + F ++S + R F+ +V+ G I
Sbjct: 156 EALEALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLVENRHWGGILR------ 209
Query: 269 ISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNL---EMLLLQAPAQSVKGGE 325
+SL+ + +QK+AE YA ME L D++G + ++ E LL A V
Sbjct: 210 LSLAPAPGASEALQKKAEAYALRAMEAL--DYVGVLALEFFQVGEELLFNEMAPRV---- 263
Query: 326 SRNLSHMLSQKLKPTQFDNPIR 347
N H + + +QF+N +R
Sbjct: 264 -HNSGHWTIEGAETSQFENHLR 284
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 685 PPNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 742
PP +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 232 PPGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 685 PPNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 742
PP +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 232 PPGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 203 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 262
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 100 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEXIDEADRDGDGEVSE 159
Query: 263 DEVREI 268
E I
Sbjct: 160 QEFLRI 165
>pdb|3TQT|A Chain A, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
pdb|3TQT|B Chain B, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
Length = 372
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 258 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG-CIMIDNLEMLLLQA 316
G+ TE E IS+ ++ N ++ + + A ++ + DH+G +ID EM L +
Sbjct: 13 GQSTEHE----ISIQSAKNIVNTL-----DAAKYLISVIFIDHVGRWYLIDQPEMFLAHS 63
Query: 317 PAQSVKGGESRNLSHMLSQKLKPTQFDN 344
P VK G +R ++ KP Q N
Sbjct: 64 PDHLVKEGSARPITIAFGDAAKPWQSLN 91
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFD 250
A + F L++ N+ +TK+ ++WD+++ +FD +QT D
Sbjct: 27 AADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVD 73
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 479 KYEPMEPYFG-----------DQPKNYWHFVKSVEG 503
KY+P EPY G D P WH V S EG
Sbjct: 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG 62
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 249 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 308
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 309 LEMLL 313
L+
Sbjct: 68 FLSLM 72
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 249 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 308
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 309 LEMLL 313
L+
Sbjct: 68 FLSLM 72
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 249 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 308
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 309 LEMLL 313
L+
Sbjct: 68 FLSLM 72
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 171 NVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLR 230
+++K TA+ + +F + +G+ K S D ++F L + ++ I +D+L
Sbjct: 10 DIKKAIGAFTAADS--FDHKKFFQMVGLKKKSADDVKKVFHILDKDKS---GFIEEDELG 64
Query: 231 EFWDQISDQSFD---SRLQTFFDMVDKDADGRITEDEVREIISLS 272
S + D +T DKD DG+I +E +++ S
Sbjct: 65 SILKGFSSDAADLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,337,763
Number of Sequences: 62578
Number of extensions: 873267
Number of successful extensions: 2289
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 83
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)